Query 005277
Match_columns 704
No_of_seqs 888 out of 3961
Neff 9.1
Searched_HMMs 46136
Date Thu Mar 28 20:54:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005277.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005277hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0263 Transcription initiati 100.0 4E-100 9E-105 810.3 48.0 634 1-700 19-705 (707)
2 KOG0271 Notchless-like WD40 re 100.0 2.4E-46 5.3E-51 367.0 25.9 283 342-702 106-473 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 1.7E-45 3.8E-50 365.9 23.7 280 347-703 171-453 (459)
4 KOG0272 U4/U6 small nuclear ri 100.0 5.1E-41 1.1E-45 334.1 20.9 260 329-651 196-458 (459)
5 KOG0286 G-protein beta subunit 100.0 3E-39 6.4E-44 307.7 32.0 281 345-703 49-338 (343)
6 KOG0271 Notchless-like WD40 re 100.0 5.2E-40 1.1E-44 322.5 24.1 277 411-703 105-432 (480)
7 KOG0279 G protein beta subunit 100.0 3.8E-37 8.2E-42 291.8 31.8 294 345-703 9-306 (315)
8 KOG0284 Polyadenylation factor 100.0 7E-39 1.5E-43 317.4 19.2 278 350-704 95-374 (464)
9 KOG0273 Beta-transducin family 100.0 3.5E-37 7.6E-42 310.4 29.9 274 350-703 234-516 (524)
10 cd08044 TAF5_NTD2 TAF5_NTD2 is 100.0 1.2E-38 2.6E-43 287.0 13.9 132 64-195 1-132 (133)
11 PF04494 TFIID_90kDa: WD40 ass 100.0 2.8E-38 6.1E-43 287.7 14.1 133 59-191 7-142 (142)
12 KOG0286 G-protein beta subunit 100.0 1.1E-35 2.4E-40 283.3 29.9 264 330-651 77-343 (343)
13 KOG0265 U5 snRNP-specific prot 100.0 7.8E-36 1.7E-40 285.5 26.1 281 346-703 42-331 (338)
14 KOG0295 WD40 repeat-containing 100.0 6.7E-36 1.5E-40 292.5 23.3 281 346-703 103-399 (406)
15 KOG0285 Pleiotropic regulator 100.0 2.3E-35 4.9E-40 287.6 26.7 288 345-703 145-432 (460)
16 cd00200 WD40 WD40 domain, foun 100.0 5.1E-34 1.1E-38 292.7 36.4 281 346-703 4-284 (289)
17 KOG0273 Beta-transducin family 100.0 8E-35 1.7E-39 293.4 28.0 298 346-703 173-475 (524)
18 KOG0266 WD40 repeat-containing 100.0 2.7E-34 5.8E-39 315.7 34.4 284 346-701 153-443 (456)
19 KOG0315 G-protein beta subunit 100.0 5E-34 1.1E-38 266.2 30.2 284 327-688 17-308 (311)
20 KOG0281 Beta-TrCP (transducin 100.0 4.8E-36 1E-40 291.0 17.4 271 350-702 196-469 (499)
21 KOG0279 G protein beta subunit 100.0 5.3E-34 1.2E-38 270.5 27.5 247 343-654 55-314 (315)
22 KOG0263 Transcription initiati 100.0 6.9E-35 1.5E-39 311.8 23.8 235 420-703 377-642 (707)
23 KOG0316 Conserved WD40 repeat- 100.0 7.5E-34 1.6E-38 262.9 25.5 283 339-700 5-290 (307)
24 KOG0645 WD40 repeat protein [G 100.0 5.6E-33 1.2E-37 262.4 32.0 287 343-703 6-304 (312)
25 KOG0291 WD40-repeat-containing 100.0 3.3E-33 7.3E-38 295.5 32.8 301 339-702 294-604 (893)
26 KOG0315 G-protein beta subunit 100.0 2.9E-33 6.2E-38 261.1 27.6 263 363-703 10-281 (311)
27 KOG0293 WD40 repeat-containing 100.0 1E-33 2.2E-38 280.8 22.8 294 336-703 209-506 (519)
28 KOG0284 Polyadenylation factor 100.0 1.2E-34 2.6E-39 287.4 16.1 246 347-655 134-382 (464)
29 PLN00181 protein SPA1-RELATED; 100.0 4.3E-32 9.4E-37 319.9 40.2 298 347-703 479-786 (793)
30 KOG0295 WD40 repeat-containing 100.0 1.6E-33 3.5E-38 275.9 22.7 246 346-652 145-405 (406)
31 KOG0318 WD40 repeat stress pro 100.0 8.8E-32 1.9E-36 274.7 33.9 344 346-702 54-509 (603)
32 KOG0282 mRNA splicing factor [ 100.0 1.3E-33 2.9E-38 285.9 18.5 288 338-702 201-497 (503)
33 KOG0291 WD40-repeat-containing 100.0 8.8E-32 1.9E-36 284.8 32.7 275 351-702 265-542 (893)
34 KOG0296 Angio-associated migra 100.0 4.8E-32 1E-36 265.8 27.8 280 345-703 58-391 (399)
35 KOG0305 Anaphase promoting com 100.0 1.2E-32 2.6E-37 290.7 24.6 295 295-655 162-463 (484)
36 KOG0276 Vesicle coat complex C 100.0 2.9E-32 6.3E-37 282.7 26.2 280 347-703 9-292 (794)
37 KOG0319 WD40-repeat-containing 100.0 6E-32 1.3E-36 286.1 26.0 279 347-703 319-612 (775)
38 KOG0285 Pleiotropic regulator 100.0 2.4E-32 5.3E-37 266.5 21.2 242 411-703 141-382 (460)
39 KOG0281 Beta-TrCP (transducin 100.0 4.8E-33 1E-37 270.2 14.9 258 325-657 211-481 (499)
40 KOG0266 WD40 repeat-containing 100.0 2.5E-31 5.4E-36 292.2 29.8 249 344-653 196-454 (456)
41 KOG0319 WD40-repeat-containing 100.0 7.6E-32 1.6E-36 285.3 24.5 258 340-655 354-621 (775)
42 KOG0275 Conserved WD40 repeat- 100.0 2.5E-31 5.3E-36 256.0 25.8 285 349-703 211-502 (508)
43 KOG0318 WD40 repeat stress pro 100.0 1.3E-30 2.8E-35 266.1 32.3 285 344-703 183-553 (603)
44 KOG0292 Vesicle coat complex C 100.0 2.4E-31 5.1E-36 285.1 25.6 277 349-702 7-314 (1202)
45 KOG1407 WD40 repeat protein [F 100.0 8.9E-31 1.9E-35 246.2 25.9 279 347-703 16-295 (313)
46 KOG0283 WD40 repeat-containing 100.0 6.4E-31 1.4E-35 283.9 27.1 269 349-655 265-578 (712)
47 cd00200 WD40 WD40 domain, foun 100.0 2.2E-29 4.9E-34 258.1 34.0 259 330-651 31-289 (289)
48 KOG0313 Microtubule binding pr 100.0 2.5E-30 5.5E-35 254.8 25.3 274 348-703 102-411 (423)
49 KOG0973 Histone transcription 100.0 3.2E-30 6.9E-35 285.0 28.4 307 346-703 7-348 (942)
50 KOG0276 Vesicle coat complex C 100.0 5.6E-30 1.2E-34 265.8 26.5 241 328-597 33-277 (794)
51 KOG0645 WD40 repeat protein [G 100.0 4.3E-29 9.4E-34 236.2 29.4 259 329-653 36-311 (312)
52 KOG0296 Angio-associated migra 100.0 1.6E-29 3.4E-34 248.2 26.8 260 329-653 85-398 (399)
53 KOG0277 Peroxisomal targeting 100.0 6.5E-30 1.4E-34 239.4 22.5 263 330-652 38-308 (311)
54 KOG0306 WD40-repeat-containing 100.0 2E-29 4.4E-34 266.8 27.5 281 342-703 364-657 (888)
55 KOG0289 mRNA splicing factor [ 100.0 2.8E-29 6.1E-34 251.0 26.3 277 352-703 220-499 (506)
56 PTZ00421 coronin; Provisional 100.0 1.5E-28 3.2E-33 269.3 33.9 259 351-658 20-295 (493)
57 KOG0299 U3 snoRNP-associated p 100.0 5.4E-29 1.2E-33 251.1 27.2 300 342-699 133-444 (479)
58 KOG0643 Translation initiation 100.0 8.8E-29 1.9E-33 233.4 26.4 291 346-703 5-310 (327)
59 KOG0278 Serine/threonine kinas 100.0 4.2E-30 9.2E-35 239.9 17.0 279 345-703 8-290 (334)
60 KOG0640 mRNA cleavage stimulat 100.0 3.5E-29 7.6E-34 240.2 23.5 303 341-702 102-418 (430)
61 KOG0288 WD40 repeat protein Ti 100.0 2.8E-30 6.1E-35 256.9 16.0 290 337-703 161-454 (459)
62 KOG1446 Histone H3 (Lys4) meth 100.0 5.7E-28 1.2E-32 234.2 31.1 275 347-700 10-295 (311)
63 KOG0310 Conserved WD40 repeat- 100.0 5.4E-29 1.2E-33 253.0 24.9 275 348-703 23-302 (487)
64 KOG0292 Vesicle coat complex C 100.0 1.3E-28 2.7E-33 264.3 28.7 239 330-597 31-300 (1202)
65 PTZ00420 coronin; Provisional 100.0 1.1E-27 2.3E-32 263.5 36.2 247 369-692 50-318 (568)
66 KOG0265 U5 snRNP-specific prot 100.0 1.7E-28 3.6E-33 235.3 25.3 262 327-651 66-336 (338)
67 KOG0274 Cdc4 and related F-box 100.0 2.3E-28 5E-33 268.0 29.9 266 350-703 207-475 (537)
68 PLN00181 protein SPA1-RELATED; 100.0 8.9E-28 1.9E-32 283.3 37.2 240 349-652 530-792 (793)
69 KOG0641 WD40 repeat protein [G 100.0 3.2E-27 6.9E-32 217.4 31.9 305 340-703 21-342 (350)
70 KOG0277 Peroxisomal targeting 100.0 1.3E-28 2.9E-33 230.7 22.4 235 420-703 59-302 (311)
71 KOG0282 mRNA splicing factor [ 100.0 1.2E-29 2.5E-34 257.3 16.1 261 328-651 235-503 (503)
72 KOG0268 Sof1-like rRNA process 100.0 2.3E-29 5.1E-34 246.4 17.0 301 317-703 34-338 (433)
73 KOG0313 Microtubule binding pr 100.0 4.1E-28 8.9E-33 239.2 25.3 263 328-653 123-418 (423)
74 KOG0772 Uncharacterized conser 100.0 3.9E-28 8.5E-33 247.3 25.3 291 340-703 156-480 (641)
75 KOG0316 Conserved WD40 repeat- 100.0 5.9E-28 1.3E-32 223.8 22.9 237 413-702 9-249 (307)
76 KOG0647 mRNA export protein (c 100.0 3.3E-27 7.1E-32 226.6 26.6 270 351-699 27-312 (347)
77 KOG0294 WD40 repeat-containing 100.0 3.8E-27 8.3E-32 227.4 25.5 248 344-657 36-285 (362)
78 KOG0274 Cdc4 and related F-box 100.0 4.3E-27 9.4E-32 258.0 29.2 261 329-660 227-489 (537)
79 KOG0293 WD40 repeat-containing 100.0 1.2E-27 2.6E-32 237.8 21.0 249 344-655 262-515 (519)
80 KOG0264 Nucleosome remodeling 100.0 5.1E-27 1.1E-31 237.3 24.9 263 340-654 113-405 (422)
81 PTZ00421 coronin; Provisional 100.0 4E-26 8.7E-31 250.2 32.2 230 347-597 71-311 (493)
82 KOG0973 Histone transcription 100.0 1E-26 2.2E-31 257.3 27.4 267 346-656 64-358 (942)
83 KOG0310 Conserved WD40 repeat- 100.0 8.7E-27 1.9E-31 237.1 24.1 246 347-657 64-313 (487)
84 KOG0300 WD40 repeat-containing 100.0 4E-27 8.7E-32 226.5 20.4 282 346-702 143-468 (481)
85 KOG0306 WD40-repeat-containing 100.0 1.8E-26 3.9E-31 244.7 26.7 263 330-657 394-668 (888)
86 KOG0308 Conserved WD40 repeat- 100.0 2.3E-27 5.1E-32 247.9 18.8 239 361-655 35-287 (735)
87 KOG0305 Anaphase promoting com 100.0 3E-26 6.5E-31 242.3 26.9 268 354-703 180-454 (484)
88 KOG0283 WD40 repeat-containing 99.9 2.1E-26 4.5E-31 249.1 24.2 239 415-702 260-568 (712)
89 KOG0275 Conserved WD40 repeat- 99.9 4.8E-27 1E-31 226.4 16.9 242 347-651 259-507 (508)
90 KOG0643 Translation initiation 99.9 8.6E-26 1.9E-30 213.3 24.4 235 416-701 5-252 (327)
91 KOG1036 Mitotic spindle checkp 99.9 2E-25 4.3E-30 215.4 27.4 267 351-700 13-294 (323)
92 KOG1407 WD40 repeat protein [F 99.9 3E-26 6.4E-31 215.8 21.1 237 415-702 14-253 (313)
93 PTZ00420 coronin; Provisional 99.9 3.5E-25 7.6E-30 243.8 32.0 223 439-703 50-286 (568)
94 KOG0301 Phospholipase A2-activ 99.9 1E-25 2.2E-30 237.5 25.2 271 345-702 8-280 (745)
95 KOG0278 Serine/threonine kinas 99.9 1.2E-26 2.5E-31 216.9 15.7 247 345-657 53-301 (334)
96 KOG0641 WD40 repeat protein [G 99.9 9.9E-25 2.1E-29 201.0 27.9 258 338-653 76-349 (350)
97 KOG0267 Microtubule severing p 99.9 2E-27 4.3E-32 251.0 11.4 236 417-701 24-259 (825)
98 KOG0639 Transducin-like enhanc 99.9 8.1E-26 1.8E-30 229.4 20.1 279 346-702 414-696 (705)
99 KOG0289 mRNA splicing factor [ 99.9 3.6E-25 7.9E-30 221.7 24.5 247 344-652 254-505 (506)
100 KOG0288 WD40 repeat protein Ti 99.9 1E-25 2.2E-30 224.5 18.9 257 329-651 196-459 (459)
101 KOG1332 Vesicle coat complex C 99.9 4.2E-25 9.1E-30 206.2 17.6 248 348-654 8-287 (299)
102 KOG0640 mRNA cleavage stimulat 99.9 7.6E-25 1.6E-29 210.5 19.3 253 341-653 162-426 (430)
103 KOG2445 Nuclear pore complex c 99.9 4.8E-24 1E-28 205.3 24.4 248 348-654 10-319 (361)
104 KOG1332 Vesicle coat complex C 99.9 7.2E-25 1.6E-29 204.7 18.0 244 417-702 7-278 (299)
105 KOG0264 Nucleosome remodeling 99.9 6.9E-24 1.5E-28 214.7 26.0 255 413-702 116-396 (422)
106 KOG2055 WD40 repeat protein [G 99.9 6.3E-24 1.4E-28 214.5 25.2 278 349-702 211-504 (514)
107 KOG1274 WD40 repeat protein [G 99.9 1.8E-23 3.9E-28 227.1 30.5 273 348-702 10-292 (933)
108 KOG0301 Phospholipase A2-activ 99.9 3.3E-24 7.2E-29 226.1 23.6 252 331-655 36-290 (745)
109 KOG2096 WD40 repeat protein [G 99.9 1.7E-23 3.6E-28 202.1 26.5 280 346-700 81-393 (420)
110 KOG0772 Uncharacterized conser 99.9 1.3E-24 2.8E-29 221.7 19.2 243 413-701 159-430 (641)
111 KOG0646 WD40 repeat protein [G 99.9 4.4E-24 9.6E-29 216.2 22.8 221 420-690 80-329 (476)
112 KOG1273 WD40 repeat protein [G 99.9 7.9E-24 1.7E-28 204.2 23.3 272 354-698 26-311 (405)
113 KOG0269 WD40 repeat-containing 99.9 4E-25 8.7E-30 235.5 15.9 220 354-598 90-318 (839)
114 KOG0308 Conserved WD40 repeat- 99.9 4.7E-25 1E-29 230.8 16.0 224 431-703 35-278 (735)
115 KOG0299 U3 snoRNP-associated p 99.9 4.1E-24 8.8E-29 216.1 22.1 218 349-597 200-433 (479)
116 KOG1446 Histone H3 (Lys4) meth 99.9 7E-23 1.5E-27 198.9 29.4 243 346-654 51-304 (311)
117 KOG4283 Transcription-coupled 99.9 2E-23 4.4E-28 199.6 24.1 219 348-580 40-279 (397)
118 KOG0269 WD40 repeat-containing 99.9 2.4E-24 5.1E-29 229.7 19.0 280 351-703 39-333 (839)
119 KOG0294 WD40 repeat-containing 99.9 4.3E-23 9.4E-28 199.5 25.8 268 365-703 3-274 (362)
120 KOG0267 Microtubule severing p 99.9 1.5E-25 3.3E-30 236.9 9.6 223 347-597 24-246 (825)
121 KOG0300 WD40 repeat-containing 99.9 9.8E-24 2.1E-28 203.3 20.7 290 331-655 171-478 (481)
122 KOG1539 WD repeat protein [Gen 99.9 1.3E-22 2.8E-27 218.0 31.1 327 330-702 182-639 (910)
123 KOG1408 WD40 repeat protein [F 99.9 2.6E-23 5.6E-28 218.9 25.0 325 330-703 346-706 (1080)
124 KOG0639 Transducin-like enhanc 99.9 3.8E-24 8.3E-29 217.3 17.7 259 331-652 441-703 (705)
125 KOG2048 WD40 repeat protein [G 99.9 2.4E-22 5.3E-27 211.9 31.1 278 350-703 24-312 (691)
126 KOG2919 Guanine nucleotide-bin 99.9 8E-23 1.7E-27 198.0 24.5 286 354-701 52-361 (406)
127 KOG0646 WD40 repeat protein [G 99.9 3.4E-23 7.3E-28 209.9 21.2 221 350-599 80-329 (476)
128 KOG0650 WD40 repeat nucleolar 99.9 1.6E-22 3.5E-27 209.8 24.4 295 338-703 387-728 (733)
129 KOG0270 WD40 repeat-containing 99.9 1.3E-22 2.8E-27 204.5 22.1 260 355-658 177-454 (463)
130 KOG1063 RNA polymerase II elon 99.9 4.1E-22 8.8E-27 210.3 25.7 327 330-703 169-641 (764)
131 KOG1408 WD40 repeat protein [F 99.9 9.9E-23 2.2E-27 214.5 20.5 246 348-655 456-715 (1080)
132 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 8.3E-21 1.8E-25 198.0 35.2 260 330-657 11-283 (300)
133 KOG0302 Ribosome Assembly prot 99.9 3E-22 6.5E-27 197.7 21.5 219 348-578 148-379 (440)
134 KOG0302 Ribosome Assembly prot 99.9 3.1E-22 6.7E-27 197.6 21.3 254 414-702 144-431 (440)
135 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.2E-20 2.7E-25 196.7 33.2 256 363-700 1-268 (300)
136 KOG0268 Sof1-like rRNA process 99.9 5.4E-23 1.2E-27 202.0 13.1 237 412-703 57-295 (433)
137 KOG2445 Nuclear pore complex c 99.9 5E-21 1.1E-25 184.6 24.3 255 418-703 10-311 (361)
138 KOG2106 Uncharacterized conser 99.9 3E-20 6.5E-25 189.6 31.0 339 327-702 264-618 (626)
139 KOG1539 WD repeat protein [Gen 99.9 2.7E-20 5.9E-25 200.3 32.3 314 327-703 131-599 (910)
140 KOG4283 Transcription-coupled 99.9 3.7E-21 8.1E-26 184.1 21.7 207 418-659 40-282 (397)
141 KOG0321 WD40 repeat-containing 99.9 3.6E-21 7.7E-26 201.5 22.7 272 362-702 63-383 (720)
142 KOG1036 Mitotic spindle checkp 99.9 1.1E-20 2.4E-25 182.8 23.6 232 345-643 48-294 (323)
143 KOG2106 Uncharacterized conser 99.9 6.6E-20 1.4E-24 187.1 29.9 273 350-701 199-512 (626)
144 KOG1274 WD40 repeat protein [G 99.9 1.3E-20 2.8E-25 205.1 25.7 236 418-702 10-254 (933)
145 KOG4378 Nuclear protein COP1 [ 99.9 5.7E-21 1.2E-25 194.2 20.4 290 328-692 10-305 (673)
146 KOG0647 mRNA export protein (c 99.9 1.8E-20 4E-25 180.4 22.8 237 329-597 49-301 (347)
147 KOG1009 Chromatin assembly com 99.9 2.1E-20 4.5E-25 186.7 24.0 303 350-702 12-364 (434)
148 KOG2096 WD40 repeat protein [G 99.9 3E-20 6.5E-25 179.8 23.3 241 416-700 81-351 (420)
149 KOG4328 WD40 protein [Function 99.9 2.7E-20 5.9E-25 188.3 23.3 281 347-700 182-484 (498)
150 KOG2055 WD40 repeat protein [G 99.9 9.7E-21 2.1E-25 191.6 20.1 237 421-700 213-455 (514)
151 KOG1063 RNA polymerase II elon 99.9 3.6E-20 7.8E-25 195.7 24.2 311 347-702 263-691 (764)
152 KOG0307 Vesicle coat complex C 99.9 1.7E-21 3.7E-26 217.0 13.9 234 421-703 64-320 (1049)
153 KOG0307 Vesicle coat complex C 99.9 2.8E-21 6.1E-26 215.2 14.8 254 348-657 61-331 (1049)
154 KOG0321 WD40 repeat-containing 99.9 3.2E-20 7E-25 194.4 21.6 255 344-657 93-395 (720)
155 KOG1445 Tumor-specific antigen 99.8 1.3E-19 2.8E-24 188.9 22.7 149 508-704 630-788 (1012)
156 KOG1034 Transcriptional repres 99.8 1.6E-19 3.5E-24 175.7 21.1 285 348-703 35-376 (385)
157 KOG1273 WD40 repeat protein [G 99.8 1.5E-19 3.1E-24 174.9 20.2 236 424-700 26-269 (405)
158 COG2319 FOG: WD40 repeat [Gene 99.8 8.1E-18 1.8E-22 182.0 36.3 281 346-701 60-350 (466)
159 KOG2048 WD40 repeat protein [G 99.8 1.1E-18 2.3E-23 184.6 27.9 234 419-703 23-268 (691)
160 KOG4378 Nuclear protein COP1 [ 99.8 6.5E-20 1.4E-24 186.6 18.0 233 338-600 67-304 (673)
161 KOG0270 WD40 repeat-containing 99.8 8.9E-20 1.9E-24 184.1 18.0 192 433-657 192-408 (463)
162 KOG0650 WD40 repeat nucleolar 99.8 2E-19 4.3E-24 187.1 20.6 241 412-703 391-673 (733)
163 KOG0642 Cell-cycle nuclear pro 99.8 5.3E-20 1.1E-24 190.8 15.2 259 345-658 288-566 (577)
164 KOG4227 WD40 repeat protein [G 99.8 1.1E-18 2.4E-23 172.8 21.8 305 346-702 51-379 (609)
165 KOG1007 WD repeat protein TSSC 99.8 2E-18 4.2E-23 165.3 22.5 254 413-702 55-353 (370)
166 KOG1034 Transcriptional repres 99.8 1.8E-19 3.9E-24 175.4 15.7 241 349-653 87-383 (385)
167 KOG1538 Uncharacterized conser 99.8 1.1E-18 2.4E-23 182.9 22.6 266 353-703 14-286 (1081)
168 COG2319 FOG: WD40 repeat [Gene 99.8 1.3E-16 2.8E-21 172.5 39.0 293 331-703 135-435 (466)
169 KOG4328 WD40 protein [Function 99.8 7.2E-19 1.6E-23 178.1 18.3 242 415-700 180-440 (498)
170 KOG0290 Conserved WD40 repeat- 99.8 1.7E-17 3.8E-22 159.0 26.5 292 339-701 32-357 (364)
171 KOG1007 WD repeat protein TSSC 99.8 2.7E-18 5.9E-23 164.3 20.8 255 346-654 58-362 (370)
172 KOG0649 WD40 repeat protein [G 99.8 1.2E-17 2.6E-22 156.2 24.4 241 353-654 12-275 (325)
173 KOG0303 Actin-binding protein 99.8 1E-17 2.2E-22 166.7 22.7 210 413-658 73-299 (472)
174 KOG1188 WD40 repeat protein [G 99.8 3.4E-18 7.5E-23 167.5 19.0 280 364-702 41-338 (376)
175 KOG1587 Cytoplasmic dynein int 99.8 1.6E-17 3.5E-22 181.2 25.6 268 331-655 223-518 (555)
176 KOG1963 WD40 repeat protein [G 99.8 3.9E-17 8.4E-22 178.1 26.8 291 349-701 203-530 (792)
177 KOG1538 Uncharacterized conser 99.8 1E-17 2.2E-22 175.8 20.2 261 326-656 29-296 (1081)
178 KOG2919 Guanine nucleotide-bin 99.8 7.6E-18 1.7E-22 163.7 17.6 210 361-597 121-348 (406)
179 KOG0322 G-protein beta subunit 99.8 5.4E-18 1.2E-22 160.5 16.0 249 340-652 3-322 (323)
180 KOG0644 Uncharacterized conser 99.8 7.2E-19 1.6E-23 188.9 11.0 265 347-699 186-457 (1113)
181 KOG0303 Actin-binding protein 99.8 5.1E-17 1.1E-21 161.8 19.8 211 347-580 77-297 (472)
182 KOG1523 Actin-related protein 99.8 1.4E-16 3E-21 155.1 21.5 227 346-597 5-257 (361)
183 KOG1517 Guanine nucleotide bin 99.7 1.8E-16 4E-21 174.5 24.8 282 353-703 1066-1374(1387)
184 KOG1524 WD40 repeat-containing 99.7 8E-17 1.7E-21 165.7 19.3 204 433-702 75-278 (737)
185 KOG1009 Chromatin assembly com 99.7 1.2E-16 2.5E-21 160.1 19.9 265 346-657 60-376 (434)
186 KOG1587 Cytoplasmic dynein int 99.7 2.6E-16 5.7E-21 171.8 24.0 237 420-703 241-509 (555)
187 PRK11028 6-phosphogluconolacto 99.7 6.9E-15 1.5E-19 156.2 34.0 248 346-654 29-305 (330)
188 PRK01742 tolB translocation pr 99.7 2.8E-16 6.1E-21 172.4 22.4 220 415-691 197-426 (429)
189 KOG0290 Conserved WD40 repeat- 99.7 4.5E-16 9.9E-21 149.4 20.3 251 325-597 68-343 (364)
190 KOG0642 Cell-cycle nuclear pro 99.7 1.2E-16 2.5E-21 166.3 17.0 232 338-589 331-573 (577)
191 KOG1523 Actin-related protein 99.7 8.4E-16 1.8E-20 149.7 19.4 230 420-697 9-266 (361)
192 KOG0771 Prolactin regulatory e 99.7 2.4E-16 5.3E-21 159.1 15.7 195 355-578 148-355 (398)
193 PRK01742 tolB translocation pr 99.7 1.7E-15 3.8E-20 166.2 23.7 216 346-597 198-423 (429)
194 PRK11028 6-phosphogluconolacto 99.7 2.3E-14 5E-19 152.2 31.5 261 366-700 5-293 (330)
195 KOG2110 Uncharacterized conser 99.7 1.5E-14 3.2E-19 143.7 27.5 235 353-656 7-251 (391)
196 KOG0649 WD40 repeat protein [G 99.7 1.6E-15 3.5E-20 142.2 19.3 205 422-657 11-239 (325)
197 KOG1272 WD40-repeat-containing 99.7 7.9E-17 1.7E-21 163.5 10.9 271 353-702 131-401 (545)
198 KOG0322 G-protein beta subunit 99.7 5.4E-16 1.2E-20 147.1 14.4 240 413-703 6-316 (323)
199 KOG1310 WD40 repeat protein [G 99.7 4.6E-16 1E-20 160.6 14.2 237 414-661 43-311 (758)
200 KOG2394 WD40 protein DMR-N9 [G 99.7 3.3E-15 7.2E-20 154.3 20.4 172 430-601 182-386 (636)
201 KOG0771 Prolactin regulatory e 99.7 1.1E-15 2.4E-20 154.4 15.5 197 425-656 148-357 (398)
202 KOG1524 WD40 repeat-containing 99.7 1.7E-15 3.7E-20 156.1 17.1 211 363-652 75-285 (737)
203 KOG2111 Uncharacterized conser 99.7 1.3E-13 2.9E-18 134.5 28.2 281 354-703 8-315 (346)
204 KOG1240 Protein kinase contain 99.7 2.9E-14 6.2E-19 160.0 26.5 279 344-658 1041-1339(1431)
205 KOG1334 WD40 repeat protein [G 99.6 3.4E-15 7.3E-20 152.7 15.3 277 346-656 137-469 (559)
206 KOG1963 WD40 repeat protein [G 99.6 6.7E-14 1.4E-18 153.1 25.9 287 356-699 21-417 (792)
207 KOG1354 Serine/threonine prote 99.6 2.4E-14 5.3E-19 140.6 20.0 309 350-702 24-427 (433)
208 KOG1188 WD40 repeat protein [G 99.6 1.1E-14 2.5E-19 143.0 17.5 193 434-660 41-249 (376)
209 KOG1310 WD40 repeat protein [G 99.6 3.3E-15 7.2E-20 154.3 13.9 207 347-580 46-306 (758)
210 KOG1517 Guanine nucleotide bin 99.6 2E-14 4.4E-19 158.7 20.6 251 352-656 1110-1384(1387)
211 KOG1272 WD40-repeat-containing 99.6 1E-15 2.2E-20 155.5 9.5 220 423-696 131-350 (545)
212 KOG1445 Tumor-specific antigen 99.6 2.1E-14 4.5E-19 150.5 19.1 196 359-578 587-799 (1012)
213 PRK03629 tolB translocation pr 99.6 3.9E-13 8.4E-18 147.3 29.7 219 418-691 195-428 (429)
214 KOG2110 Uncharacterized conser 99.6 1.6E-13 3.5E-18 136.4 23.7 228 422-703 6-241 (391)
215 KOG2139 WD40 repeat protein [G 99.6 2.2E-13 4.7E-18 134.9 23.7 192 353-576 100-308 (445)
216 KOG2139 WD40 repeat protein [G 99.6 1.1E-13 2.4E-18 136.8 21.1 240 422-700 99-365 (445)
217 KOG0644 Uncharacterized conser 99.6 1.3E-15 2.8E-20 164.1 7.2 234 412-704 181-420 (1113)
218 KOG2394 WD40 protein DMR-N9 [G 99.6 2.4E-14 5.3E-19 148.0 16.1 174 360-557 182-384 (636)
219 PRK03629 tolB translocation pr 99.6 6.5E-13 1.4E-17 145.6 28.3 217 347-597 194-425 (429)
220 KOG1240 Protein kinase contain 99.6 3.4E-13 7.3E-18 151.5 25.1 220 410-660 1037-1280(1431)
221 PRK04922 tolB translocation pr 99.6 4.9E-13 1.1E-17 147.1 26.5 199 417-654 199-412 (433)
222 KOG4497 Uncharacterized conser 99.6 7.7E-13 1.7E-17 129.3 24.3 269 352-701 49-423 (447)
223 PRK05137 tolB translocation pr 99.6 1.7E-12 3.8E-17 142.9 29.7 202 415-655 195-414 (435)
224 KOG4497 Uncharacterized conser 99.6 5.6E-14 1.2E-18 137.2 15.1 222 356-654 13-241 (447)
225 PRK04922 tolB translocation pr 99.6 1.1E-12 2.4E-17 144.3 26.5 218 346-597 198-430 (433)
226 PRK02889 tolB translocation pr 99.6 7.2E-13 1.6E-17 145.3 24.7 218 347-597 191-422 (427)
227 PRK02889 tolB translocation pr 99.6 9.5E-13 2.1E-17 144.4 25.6 220 417-691 191-425 (427)
228 PF08662 eIF2A: Eukaryotic tra 99.5 1E-12 2.3E-17 127.3 21.2 155 425-585 9-186 (194)
229 KOG2321 WD40 repeat protein [G 99.5 8.3E-13 1.8E-17 137.8 20.4 272 348-656 48-346 (703)
230 KOG4227 WD40 repeat protein [G 99.5 1.4E-12 3.1E-17 129.8 21.2 247 347-654 101-388 (609)
231 PRK05137 tolB translocation pr 99.5 4.4E-12 9.5E-17 139.7 27.7 216 347-597 197-430 (435)
232 KOG3881 Uncharacterized conser 99.5 1.4E-12 3E-17 130.7 21.0 205 418-659 102-326 (412)
233 KOG2111 Uncharacterized conser 99.5 9.6E-12 2.1E-16 121.7 22.6 227 423-703 7-249 (346)
234 PF02239 Cytochrom_D1: Cytochr 99.5 9.2E-11 2E-15 125.0 31.9 296 364-702 6-337 (369)
235 PF08662 eIF2A: Eukaryotic tra 99.5 5.5E-12 1.2E-16 122.2 20.4 149 467-654 9-180 (194)
236 KOG3881 Uncharacterized conser 99.5 4.6E-12 1E-16 127.0 19.3 207 352-585 106-328 (412)
237 TIGR02800 propeller_TolB tol-p 99.4 5.6E-11 1.2E-15 130.6 27.1 162 417-581 185-358 (417)
238 KOG1334 WD40 repeat protein [G 99.4 1.4E-12 3.1E-17 133.7 12.7 241 413-701 134-457 (559)
239 KOG2321 WD40 repeat protein [G 99.4 1.7E-11 3.6E-16 128.2 20.0 234 419-701 49-334 (703)
240 TIGR02800 propeller_TolB tol-p 99.4 7.8E-11 1.7E-15 129.4 26.3 217 347-597 185-416 (417)
241 PRK00178 tolB translocation pr 99.4 2.1E-10 4.5E-15 126.5 29.3 199 417-654 194-407 (430)
242 PRK00178 tolB translocation pr 99.4 2E-10 4.4E-15 126.6 28.5 217 347-597 194-425 (430)
243 PRK04792 tolB translocation pr 99.4 2.7E-10 5.9E-15 125.4 27.9 162 417-581 213-386 (448)
244 PRK01029 tolB translocation pr 99.4 3.3E-10 7.2E-15 123.8 27.3 201 420-656 183-406 (428)
245 PF02239 Cytochrom_D1: Cytochr 99.3 1.6E-09 3.4E-14 115.6 31.1 240 355-658 40-352 (369)
246 KOG2041 WD40 repeat protein [G 99.3 9.1E-11 2E-15 125.1 21.1 284 350-699 13-327 (1189)
247 PF10282 Lactonase: Lactonase, 99.3 3.6E-09 7.8E-14 112.8 33.8 236 422-702 37-313 (345)
248 PRK04792 tolB translocation pr 99.3 3.1E-10 6.7E-15 125.0 26.2 216 348-597 214-444 (448)
249 KOG1064 RAVE (regulator of V-A 99.3 1.2E-11 2.7E-16 143.4 15.0 196 417-661 2204-2406(2439)
250 KOG0974 WD-repeat protein WDR6 99.3 3E-11 6.5E-16 134.8 17.3 198 422-656 88-291 (967)
251 KOG4547 WD40 repeat-containing 99.3 1.1E-10 2.3E-15 123.4 20.2 165 431-597 3-192 (541)
252 KOG4547 WD40 repeat-containing 99.3 3.8E-10 8.2E-15 119.3 24.3 192 360-578 2-221 (541)
253 PRK01029 tolB translocation pr 99.3 5.5E-10 1.2E-14 122.1 26.4 217 350-597 183-422 (428)
254 KOG0974 WD-repeat protein WDR6 99.3 4.1E-11 9E-16 133.6 16.5 195 357-578 93-289 (967)
255 KOG1409 Uncharacterized conser 99.3 2.5E-10 5.3E-15 112.9 19.6 203 350-579 67-272 (404)
256 PF10282 Lactonase: Lactonase, 99.3 1.3E-08 2.7E-13 108.6 34.6 248 349-654 34-323 (345)
257 KOG1409 Uncharacterized conser 99.3 6.1E-10 1.3E-14 110.2 20.3 247 347-656 20-273 (404)
258 KOG2315 Predicted translation 99.2 3E-09 6.6E-14 111.7 25.8 264 351-701 34-375 (566)
259 KOG1064 RAVE (regulator of V-A 99.2 4E-11 8.6E-16 139.3 12.9 197 350-586 2207-2407(2439)
260 KOG2314 Translation initiation 99.2 1.9E-09 4E-14 112.7 23.9 269 354-701 213-513 (698)
261 KOG0280 Uncharacterized conser 99.2 1.3E-09 2.8E-14 105.8 20.8 176 421-597 69-261 (339)
262 KOG0280 Uncharacterized conser 99.2 7.7E-10 1.7E-14 107.4 18.6 223 351-597 69-309 (339)
263 KOG4190 Uncharacterized conser 99.2 1.9E-11 4.2E-16 126.6 7.8 175 413-589 727-918 (1034)
264 COG5170 CDC55 Serine/threonine 99.2 5.2E-10 1.1E-14 108.9 16.2 213 351-588 26-321 (460)
265 COG2706 3-carboxymuconate cycl 99.2 6.1E-08 1.3E-12 97.5 30.2 243 417-702 35-312 (346)
266 KOG4190 Uncharacterized conser 99.2 2.5E-10 5.5E-15 118.5 12.5 226 338-587 722-958 (1034)
267 PLN02919 haloacid dehalogenase 99.1 5.7E-08 1.2E-12 116.9 31.6 264 356-657 572-892 (1057)
268 PF04762 IKI3: IKI3 family; I 99.1 4.6E-08 1E-12 115.5 30.1 203 350-580 74-336 (928)
269 KOG1354 Serine/threonine prote 99.1 3.2E-09 6.9E-14 105.0 16.5 230 349-580 82-362 (433)
270 COG5354 Uncharacterized protei 99.1 1.5E-08 3.3E-13 105.2 21.4 283 351-703 32-360 (561)
271 KOG2041 WD40 repeat protein [G 99.1 2.6E-09 5.6E-14 114.3 15.7 238 421-702 14-280 (1189)
272 COG2706 3-carboxymuconate cycl 99.1 6.9E-07 1.5E-11 90.1 32.0 250 349-656 37-324 (346)
273 PF04762 IKI3: IKI3 family; I 99.1 2E-07 4.3E-12 110.2 32.7 338 349-701 118-507 (928)
274 KOG0309 Conserved WD40 repeat- 99.1 2.5E-09 5.4E-14 114.9 14.8 252 353-654 69-340 (1081)
275 KOG2314 Translation initiation 99.0 7.5E-08 1.6E-12 101.0 24.9 275 351-702 249-559 (698)
276 KOG2315 Predicted translation 99.0 4.9E-08 1.1E-12 102.8 23.5 231 355-655 129-392 (566)
277 KOG1912 WD40 repeat protein [G 99.0 1.2E-07 2.6E-12 102.9 26.5 204 347-578 51-305 (1062)
278 PRK04043 tolB translocation pr 99.0 2.4E-07 5.1E-12 100.9 28.5 207 353-595 189-417 (419)
279 TIGR02658 TTQ_MADH_Hv methylam 99.0 3.6E-07 7.8E-12 95.6 28.3 242 359-660 53-337 (352)
280 KOG4532 WD40-like repeat conta 99.0 1.1E-07 2.4E-12 91.3 20.9 198 362-586 83-291 (344)
281 COG5354 Uncharacterized protei 98.9 3.6E-07 7.9E-12 95.2 25.0 239 351-657 71-352 (561)
282 TIGR03300 assembly_YfgL outer 98.9 5.5E-07 1.2E-11 97.5 27.4 186 433-658 145-343 (377)
283 COG4946 Uncharacterized protei 98.9 3.2E-06 7E-11 87.4 29.9 150 415-566 353-507 (668)
284 KOG3914 WD repeat protein WDR4 98.9 2.5E-08 5.4E-13 101.1 14.3 163 355-544 66-232 (390)
285 KOG1912 WD40 repeat protein [G 98.9 1.4E-07 3.1E-12 102.3 20.5 239 354-654 18-305 (1062)
286 COG4946 Uncharacterized protei 98.9 8.2E-07 1.8E-11 91.6 24.8 150 432-585 331-485 (668)
287 KOG4714 Nucleoporin [Nuclear s 98.9 2.4E-08 5.3E-13 95.5 12.9 175 335-536 73-255 (319)
288 PRK04043 tolB translocation pr 98.9 1.4E-06 2.9E-11 95.0 28.2 202 443-702 169-389 (419)
289 KOG2695 WD40 repeat protein [G 98.9 4.6E-09 1E-13 104.0 8.1 156 469-660 217-383 (425)
290 KOG3914 WD repeat protein WDR4 98.9 2.1E-08 4.5E-13 101.7 12.8 161 423-586 64-232 (390)
291 PF15492 Nbas_N: Neuroblastoma 98.9 2E-06 4.3E-11 84.4 25.7 231 357-657 3-263 (282)
292 PLN02919 haloacid dehalogenase 98.9 7.4E-07 1.6E-11 107.4 27.5 215 354-581 626-892 (1057)
293 TIGR02658 TTQ_MADH_Hv methylam 98.8 5.7E-06 1.2E-10 86.6 30.5 217 429-699 53-318 (352)
294 COG5170 CDC55 Serine/threonine 98.8 4.6E-08 9.9E-13 95.6 13.6 244 421-702 26-359 (460)
295 PF08450 SGL: SMP-30/Gluconola 98.8 9.5E-06 2.1E-10 82.2 30.5 206 356-597 4-232 (246)
296 PF13360 PQQ_2: PQQ-like domai 98.8 1.9E-06 4.2E-11 86.6 25.4 187 432-658 35-235 (238)
297 KOG0309 Conserved WD40 repeat- 98.8 3.3E-08 7.1E-13 106.5 12.6 203 421-657 24-236 (1081)
298 KOG1832 HIV-1 Vpr-binding prot 98.8 3.6E-09 7.9E-14 115.6 4.8 199 346-587 1096-1301(1516)
299 PF08450 SGL: SMP-30/Gluconola 98.8 1.8E-05 3.9E-10 80.2 29.9 215 426-697 4-243 (246)
300 KOG1832 HIV-1 Vpr-binding prot 98.7 1.2E-08 2.5E-13 111.8 5.9 220 411-696 1091-1317(1516)
301 TIGR03300 assembly_YfgL outer 98.7 5.9E-06 1.3E-10 89.5 27.0 186 432-660 104-304 (377)
302 KOG2066 Vacuolar assembly/sort 98.7 5.4E-07 1.2E-11 98.8 17.8 154 421-590 39-200 (846)
303 KOG4532 WD40-like repeat conta 98.7 1.1E-06 2.4E-11 84.6 17.3 201 441-692 50-262 (344)
304 KOG1275 PAB-dependent poly(A) 98.7 4.7E-07 1E-11 100.2 15.9 149 422-575 178-340 (1118)
305 KOG2695 WD40 repeat protein [G 98.6 1.2E-07 2.7E-12 94.1 9.7 148 437-587 228-386 (425)
306 PF07433 DUF1513: Protein of u 98.6 4.2E-05 9E-10 77.5 27.8 207 354-588 7-258 (305)
307 PF15492 Nbas_N: Neuroblastoma 98.6 7.9E-06 1.7E-10 80.2 21.8 203 355-589 47-271 (282)
308 KOG2066 Vacuolar assembly/sort 98.6 2.9E-06 6.4E-11 93.2 19.5 180 352-577 40-233 (846)
309 KOG4714 Nucleoporin [Nuclear s 98.6 1.4E-07 3E-12 90.4 8.2 162 417-578 85-255 (319)
310 PF07433 DUF1513: Protein of u 98.5 0.00016 3.5E-09 73.3 28.1 199 424-658 7-252 (305)
311 KOG2114 Vacuolar assembly/sort 98.5 1.5E-05 3.3E-10 88.3 22.2 213 353-597 27-264 (933)
312 KOG0882 Cyclophilin-related pe 98.4 2.6E-06 5.7E-11 87.6 13.0 246 420-702 8-298 (558)
313 KOG1920 IkappaB kinase complex 98.4 4.6E-05 1E-09 87.7 23.8 201 349-580 66-325 (1265)
314 PF00400 WD40: WD domain, G-be 98.4 8.6E-07 1.9E-11 61.4 6.5 39 537-575 1-39 (39)
315 PRK11138 outer membrane biogen 98.4 0.00011 2.3E-09 80.1 25.6 187 433-659 160-359 (394)
316 KOG1645 RING-finger-containing 98.4 1.7E-05 3.7E-10 80.8 17.2 81 414-495 186-268 (463)
317 KOG3617 WD40 and TPR repeat-co 98.4 1.7E-05 3.7E-10 87.3 18.4 111 354-494 18-132 (1416)
318 KOG1275 PAB-dependent poly(A) 98.4 6.8E-06 1.5E-10 91.4 15.5 180 433-651 147-340 (1118)
319 PF13360 PQQ_2: PQQ-like domai 98.4 0.00018 4E-09 72.1 24.6 145 442-589 2-152 (238)
320 KOG0882 Cyclophilin-related pe 98.3 2.7E-06 5.8E-11 87.5 10.7 273 349-660 7-312 (558)
321 KOG2114 Vacuolar assembly/sort 98.3 8.5E-05 1.8E-09 82.6 22.3 169 428-597 30-222 (933)
322 PF00400 WD40: WD domain, G-be 98.3 1.8E-06 3.8E-11 59.8 6.1 38 454-491 2-39 (39)
323 PF11768 DUF3312: Protein of u 98.3 0.00025 5.5E-09 76.5 23.7 112 466-579 208-331 (545)
324 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.00081 1.8E-08 72.0 27.7 204 360-594 1-284 (353)
325 KOG1333 Uncharacterized conser 98.2 7.4E-06 1.6E-10 75.3 9.9 114 4-125 6-120 (241)
326 PRK02888 nitrous-oxide reducta 98.2 0.00017 3.7E-09 79.7 22.2 196 432-654 140-405 (635)
327 KOG1008 Uncharacterized conser 98.2 6E-07 1.3E-11 96.1 1.9 198 352-577 57-275 (783)
328 PRK02888 nitrous-oxide reducta 98.2 0.00066 1.4E-08 75.1 24.8 149 427-578 198-405 (635)
329 PF08596 Lgl_C: Lethal giant l 98.2 0.00066 1.4E-08 72.9 24.4 234 353-587 3-300 (395)
330 KOG1920 IkappaB kinase complex 98.2 0.00014 3E-09 83.9 19.9 197 422-655 69-324 (1265)
331 PRK11138 outer membrane biogen 98.1 0.00061 1.3E-08 74.2 24.4 178 434-652 206-393 (394)
332 KOG3617 WD40 and TPR repeat-co 98.0 0.00019 4.2E-09 79.3 17.3 70 354-451 62-131 (1416)
333 PF04053 Coatomer_WDAD: Coatom 98.0 0.0008 1.7E-08 73.3 21.7 220 420-654 31-263 (443)
334 PF11768 DUF3312: Protein of u 98.0 0.00029 6.3E-09 76.0 17.7 150 507-692 207-369 (545)
335 KOG4649 PQQ (pyrrolo-quinoline 98.0 0.0024 5.3E-08 61.9 21.6 70 362-460 62-132 (354)
336 KOG1008 Uncharacterized conser 98.0 5E-06 1.1E-10 89.2 3.6 174 422-597 57-251 (783)
337 KOG1645 RING-finger-containing 97.9 0.00013 2.8E-09 74.6 12.7 92 445-537 175-268 (463)
338 KOG3621 WD40 repeat-containing 97.9 0.00079 1.7E-08 73.7 18.9 141 330-495 55-199 (726)
339 cd00216 PQQ_DH Dehydrogenases 97.9 0.017 3.7E-07 64.6 30.1 152 434-585 111-327 (488)
340 PF02897 Peptidase_S9_N: Proly 97.9 0.026 5.6E-07 61.9 30.9 214 354-596 126-377 (414)
341 PF06977 SdiA-regulated: SdiA- 97.8 0.0089 1.9E-07 59.8 23.8 198 347-574 17-247 (248)
342 PF04841 Vps16_N: Vps16, N-ter 97.8 0.0065 1.4E-07 66.2 24.9 168 422-597 81-267 (410)
343 KOG3621 WD40 repeat-containing 97.8 0.0018 3.8E-08 71.2 19.8 110 358-494 40-155 (726)
344 COG0823 TolB Periplasmic compo 97.8 0.0049 1.1E-07 67.0 23.6 175 444-656 174-361 (425)
345 PF08513 LisH: LisH; InterPro 97.8 3.1E-05 6.8E-10 48.2 3.7 27 4-30 1-27 (27)
346 PF06977 SdiA-regulated: SdiA- 97.8 0.0075 1.6E-07 60.4 22.6 168 416-585 16-208 (248)
347 COG3386 Gluconolactonase [Carb 97.7 0.0098 2.1E-07 61.7 23.5 207 358-597 31-262 (307)
348 PF14583 Pectate_lyase22: Olig 97.7 0.029 6.3E-07 59.0 25.5 155 426-581 85-276 (386)
349 PF08596 Lgl_C: Lethal giant l 97.7 0.006 1.3E-07 65.6 21.1 208 423-660 3-297 (395)
350 COG0823 TolB Periplasmic compo 97.7 0.0027 5.9E-08 69.0 18.6 160 419-581 190-362 (425)
351 PF00930 DPPIV_N: Dipeptidyl p 97.6 0.007 1.5E-07 64.8 21.6 93 430-524 1-119 (353)
352 PF06433 Me-amine-dh_H: Methyl 97.6 0.036 7.7E-07 57.3 24.8 247 356-661 40-328 (342)
353 COG3391 Uncharacterized conser 97.6 0.035 7.5E-07 60.0 26.0 199 424-658 76-288 (381)
354 COG3391 Uncharacterized conser 97.6 0.03 6.5E-07 60.5 25.2 204 354-588 76-294 (381)
355 KOG4649 PQQ (pyrrolo-quinoline 97.6 0.047 1E-06 53.3 23.0 143 433-577 23-165 (354)
356 PF00780 CNH: CNH domain; Int 97.5 0.064 1.4E-06 55.1 25.6 148 361-543 5-173 (275)
357 PF04053 Coatomer_WDAD: Coatom 97.4 0.0076 1.6E-07 65.8 18.3 215 348-578 29-263 (443)
358 KOG4640 Anaphase-promoting com 97.4 0.00078 1.7E-08 72.9 9.7 94 421-515 20-115 (665)
359 cd00216 PQQ_DH Dehydrogenases 97.3 0.024 5.3E-07 63.4 21.5 202 433-661 61-327 (488)
360 PF03178 CPSF_A: CPSF A subuni 97.3 0.052 1.1E-06 57.3 22.7 185 363-574 42-262 (321)
361 PF02897 Peptidase_S9_N: Proly 97.3 0.13 2.9E-06 56.2 26.6 157 423-580 125-312 (414)
362 PF08553 VID27: VID27 cytoplas 97.2 0.0065 1.4E-07 69.9 15.8 142 433-576 493-646 (794)
363 PF03178 CPSF_A: CPSF A subuni 97.2 0.061 1.3E-06 56.7 22.3 140 433-577 42-202 (321)
364 KOG4640 Anaphase-promoting com 97.2 0.0014 3E-08 71.1 9.5 93 463-556 20-114 (665)
365 COG3386 Gluconolactonase [Carb 97.2 0.11 2.5E-06 53.8 23.4 146 427-577 30-193 (307)
366 PRK13616 lipoprotein LpqB; Pro 97.2 0.037 8E-07 62.9 21.3 126 442-573 328-472 (591)
367 PRK13616 lipoprotein LpqB; Pro 97.1 0.036 7.9E-07 62.9 20.1 146 422-576 350-524 (591)
368 PF04841 Vps16_N: Vps16, N-ter 97.1 0.16 3.4E-06 55.5 24.4 172 444-658 62-251 (410)
369 smart00320 WD40 WD40 repeats. 97.1 0.0015 3.2E-08 43.3 5.7 39 537-575 2-40 (40)
370 PF14655 RAB3GAP2_N: Rab3 GTPa 97.1 0.36 7.7E-06 52.1 25.7 44 547-590 307-350 (415)
371 PF06433 Me-amine-dh_H: Methyl 97.0 0.18 3.9E-06 52.2 22.2 153 434-587 148-330 (342)
372 KOG4441 Proteins containing BT 97.0 0.047 1E-06 62.0 20.1 217 433-704 285-535 (571)
373 KOG1897 Damage-specific DNA bi 97.0 0.89 1.9E-05 52.6 29.0 273 351-702 530-890 (1096)
374 PHA02713 hypothetical protein; 97.0 0.049 1.1E-06 61.9 19.7 184 432-655 303-535 (557)
375 PHA02713 hypothetical protein; 97.0 0.059 1.3E-06 61.3 20.1 92 474-569 303-409 (557)
376 smart00320 WD40 WD40 repeats. 96.9 0.0025 5.4E-08 42.2 5.5 38 454-491 3-40 (40)
377 PF08553 VID27: VID27 cytoplas 96.9 0.019 4E-07 66.3 15.0 133 482-653 501-647 (794)
378 KOG2444 WD40 repeat protein [G 96.8 0.0013 2.9E-08 62.8 4.5 142 478-656 33-180 (238)
379 smart00667 LisH Lissencephaly 96.8 0.0023 5E-08 42.3 4.3 31 2-32 2-32 (34)
380 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.8 0.62 1.3E-05 52.6 26.1 99 442-540 180-338 (527)
381 TIGR03074 PQQ_membr_DH membran 96.7 0.3 6.5E-06 57.1 23.8 111 433-544 194-353 (764)
382 PRK10115 protease 2; Provision 96.7 2 4.2E-05 50.3 32.5 190 353-576 128-343 (686)
383 PF05694 SBP56: 56kDa selenium 96.6 0.93 2E-05 48.4 24.0 234 432-699 86-392 (461)
384 KOG2395 Protein involved in va 96.6 0.03 6.5E-07 59.9 13.0 143 432-577 344-500 (644)
385 KOG2079 Vacuolar assembly/sort 96.6 0.022 4.8E-07 65.7 12.8 100 433-534 99-202 (1206)
386 KOG2395 Protein involved in va 96.6 0.065 1.4E-06 57.4 15.1 137 516-699 344-490 (644)
387 PF14583 Pectate_lyase22: Olig 96.6 0.71 1.5E-05 48.8 22.7 139 427-566 41-206 (386)
388 KOG2079 Vacuolar assembly/sort 96.5 0.009 2E-07 68.7 8.9 101 474-576 98-202 (1206)
389 PF10168 Nup88: Nuclear pore c 96.5 0.31 6.7E-06 56.5 21.5 27 421-447 84-110 (717)
390 PF14783 BBS2_Mid: Ciliary BBS 96.5 0.21 4.5E-06 42.8 14.8 100 424-530 2-109 (111)
391 PF07995 GSDH: Glucose / Sorbo 96.4 1.6 3.4E-05 46.2 25.3 237 354-648 4-330 (331)
392 PF14783 BBS2_Mid: Ciliary BBS 96.4 0.26 5.7E-06 42.3 15.1 100 466-572 2-109 (111)
393 PHA03098 kelch-like protein; P 96.4 0.14 3E-06 58.3 18.1 146 432-580 294-467 (534)
394 PRK10115 protease 2; Provision 96.4 2 4.3E-05 50.2 27.7 111 422-534 127-254 (686)
395 COG3490 Uncharacterized protei 96.4 0.62 1.3E-05 46.5 19.5 157 428-584 120-317 (366)
396 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.4 0.52 1.1E-05 53.2 21.9 199 433-658 69-338 (527)
397 KOG2444 WD40 repeat protein [G 96.3 0.012 2.7E-07 56.4 7.5 105 363-494 70-178 (238)
398 KOG4441 Proteins containing BT 96.3 0.35 7.7E-06 55.0 20.5 148 426-580 327-502 (571)
399 PF15390 DUF4613: Domain of un 96.3 0.13 2.8E-06 56.2 15.5 149 421-577 19-186 (671)
400 PF14655 RAB3GAP2_N: Rab3 GTPa 96.1 2.4 5.2E-05 45.8 24.4 82 506-587 308-408 (415)
401 COG3204 Uncharacterized protei 96.0 1.7 3.7E-05 43.8 20.4 118 460-577 82-210 (316)
402 COG3204 Uncharacterized protei 95.9 0.66 1.4E-05 46.6 17.4 166 419-585 83-270 (316)
403 KOG1897 Damage-specific DNA bi 95.9 5 0.00011 46.9 26.7 183 435-656 686-901 (1096)
404 PF10647 Gmad1: Lipoprotein Lp 95.8 0.61 1.3E-05 47.2 17.7 153 507-702 25-187 (253)
405 PF05694 SBP56: 56kDa selenium 95.8 2.4 5.2E-05 45.4 21.8 151 429-579 137-344 (461)
406 PF05096 Glu_cyclase_2: Glutam 95.7 1.6 3.5E-05 43.8 19.2 196 465-699 46-250 (264)
407 PF05096 Glu_cyclase_2: Glutam 95.7 2.7 5.9E-05 42.2 23.5 158 423-585 46-211 (264)
408 PF12894 Apc4_WD40: Anaphase-p 95.6 0.035 7.6E-07 39.8 5.3 32 350-381 10-41 (47)
409 COG3490 Uncharacterized protei 95.6 1 2.2E-05 45.0 16.9 101 466-566 70-180 (366)
410 KOG4499 Ca2+-binding protein R 95.5 2.7 5.9E-05 40.9 19.2 133 463-597 108-261 (310)
411 PHA03098 kelch-like protein; P 95.5 0.47 1E-05 53.9 17.0 64 516-580 342-417 (534)
412 KOG2280 Vacuolar assembly/sort 95.3 1.4 3E-05 49.8 18.7 159 422-586 84-255 (829)
413 TIGR03074 PQQ_membr_DH membran 95.2 6 0.00013 46.6 25.0 153 432-585 259-485 (764)
414 PF10647 Gmad1: Lipoprotein Lp 95.2 4.1 8.9E-05 41.2 23.3 130 465-597 25-173 (253)
415 PF14870 PSII_BNR: Photosynthe 95.1 4.9 0.00011 41.6 33.2 273 348-699 13-294 (302)
416 KOG3630 Nuclear pore complex, 95.0 0.24 5.2E-06 57.9 12.2 143 422-565 101-261 (1405)
417 PF00780 CNH: CNH domain; Int 95.0 4.8 0.00011 41.0 24.9 208 354-589 38-267 (275)
418 PF12894 Apc4_WD40: Anaphase-p 95.0 0.084 1.8E-06 37.8 5.6 34 421-455 11-44 (47)
419 PHA02790 Kelch-like protein; P 94.9 1.1 2.3E-05 50.2 17.4 141 433-580 272-426 (480)
420 TIGR02604 Piru_Ver_Nterm putat 94.8 1.4 3E-05 47.4 17.3 100 422-524 72-202 (367)
421 KOG1916 Nuclear protein, conta 94.6 0.035 7.5E-07 62.8 4.4 165 415-582 126-328 (1283)
422 KOG3630 Nuclear pore complex, 94.6 0.32 6.9E-06 56.9 11.9 133 463-597 100-251 (1405)
423 PHA02790 Kelch-like protein; P 94.6 1.5 3.3E-05 49.0 17.5 65 515-580 317-387 (480)
424 KOG0396 Uncharacterized conser 94.6 0.26 5.7E-06 50.6 10.1 148 4-176 116-266 (389)
425 PRK13684 Ycf48-like protein; P 94.5 4.1 8.9E-05 43.1 19.7 114 463-580 172-290 (334)
426 KOG4499 Ca2+-binding protein R 94.5 2.5 5.3E-05 41.2 15.7 131 424-556 111-262 (310)
427 PF07995 GSDH: Glucose / Sorbo 94.4 8 0.00017 40.9 23.7 100 424-525 4-133 (331)
428 COG5167 VID27 Protein involved 94.4 1.9 4.2E-05 46.4 16.2 142 432-577 478-632 (776)
429 PF08728 CRT10: CRT10; InterP 94.3 2.4 5.2E-05 48.6 18.1 173 351-534 40-245 (717)
430 PF14870 PSII_BNR: Photosynthe 94.3 7.7 0.00017 40.2 26.8 229 420-700 15-252 (302)
431 PF10168 Nup88: Nuclear pore c 94.3 5.6 0.00012 46.4 21.4 29 463-492 84-112 (717)
432 TIGR02604 Piru_Ver_Nterm putat 94.1 2.7 5.8E-05 45.2 17.5 141 423-566 15-202 (367)
433 TIGR03118 PEPCTERM_chp_1 conse 94.1 7.8 0.00017 39.5 24.6 221 355-597 26-305 (336)
434 PRK13684 Ycf48-like protein; P 93.8 11 0.00023 40.0 29.2 144 505-699 172-321 (334)
435 KOG2659 LisH motif-containing 93.7 0.18 3.9E-06 48.9 6.7 169 2-186 25-197 (228)
436 PF14727 PHTB1_N: PTHB1 N-term 93.7 12 0.00027 40.5 27.5 187 434-658 146-365 (418)
437 TIGR03118 PEPCTERM_chp_1 conse 93.5 10 0.00022 38.8 23.5 205 424-658 25-284 (336)
438 PF15390 DUF4613: Domain of un 93.3 0.94 2E-05 49.7 12.0 117 419-535 54-186 (671)
439 KOG1916 Nuclear protein, conta 93.2 0.19 4E-06 57.2 6.7 31 352-382 181-214 (1283)
440 PF12234 Rav1p_C: RAVE protein 93.1 1.9 4E-05 49.0 14.4 113 549-699 31-147 (631)
441 PF12234 Rav1p_C: RAVE protein 92.9 2.9 6.3E-05 47.5 15.6 110 465-576 31-155 (631)
442 PLN02153 epithiospecifier prot 92.7 15 0.00033 38.9 21.7 64 474-538 85-170 (341)
443 PF08728 CRT10: CRT10; InterP 92.5 4.5 9.7E-05 46.5 16.4 142 433-576 49-245 (717)
444 PF14761 HPS3_N: Hermansky-Pud 92.3 8.2 0.00018 37.4 15.6 138 434-576 29-213 (215)
445 PF05935 Arylsulfotrans: Aryls 91.9 25 0.00053 39.3 23.7 117 469-589 153-313 (477)
446 KOG1983 Tomosyn and related SN 91.5 7.8 0.00017 47.1 18.0 32 351-382 35-66 (993)
447 KOG2377 Uncharacterized conser 91.3 4.9 0.00011 42.8 13.8 116 420-537 65-187 (657)
448 TIGR03547 muta_rot_YjhT mutatr 91.2 23 0.00049 37.6 20.0 17 686-702 316-332 (346)
449 PLN02193 nitrile-specifier pro 90.8 31 0.00068 38.4 22.1 105 474-581 228-355 (470)
450 PLN00033 photosystem II stabil 90.8 20 0.00043 38.9 18.5 148 422-574 239-396 (398)
451 COG5276 Uncharacterized conser 90.3 22 0.00048 36.0 25.4 151 421-580 86-244 (370)
452 PRK14131 N-acetylneuraminic ac 90.1 31 0.00066 37.2 19.9 53 474-526 84-149 (376)
453 PF10214 Rrn6: RNA polymerase 89.7 51 0.0011 39.3 26.3 119 461-581 77-236 (765)
454 PF10313 DUF2415: Uncharacteri 89.2 1.4 3.1E-05 30.7 5.4 32 548-579 1-35 (43)
455 COG3823 Glutamine cyclotransfe 89.2 13 0.00028 35.8 13.4 150 432-585 55-212 (262)
456 KOG1900 Nuclear pore complex, 88.9 4.8 0.0001 48.5 12.8 136 440-578 96-273 (1311)
457 KOG4460 Nuclear pore complex, 88.8 6.3 0.00014 42.8 12.4 98 421-540 103-203 (741)
458 COG5167 VID27 Protein involved 88.6 5.8 0.00013 42.9 12.0 138 478-653 483-632 (776)
459 PLN00033 photosystem II stabil 88.0 44 0.00095 36.2 25.8 140 508-699 241-389 (398)
460 PF10313 DUF2415: Uncharacteri 87.6 1.6 3.5E-05 30.4 4.8 31 352-382 1-34 (43)
461 COG3823 Glutamine cyclotransfe 87.6 18 0.00039 34.8 13.3 122 440-565 108-247 (262)
462 KOG2247 WD40 repeat-containing 87.6 0.091 2E-06 55.9 -1.9 147 422-571 35-182 (615)
463 COG1520 FOG: WD40-like repeat 87.4 42 0.00092 35.9 18.5 106 478-585 71-179 (370)
464 PF13449 Phytase-like: Esteras 87.2 37 0.00081 35.7 17.5 143 421-564 19-231 (326)
465 PF07569 Hira: TUP1-like enhan 87.1 4.7 0.0001 39.8 9.9 70 513-583 18-101 (219)
466 KOG2377 Uncharacterized conser 87.0 9.2 0.0002 40.9 12.1 136 426-564 27-170 (657)
467 TIGR03548 mutarot_permut cycli 86.9 43 0.00093 35.1 20.8 106 474-580 72-197 (323)
468 PF03022 MRJP: Major royal jel 86.2 44 0.00096 34.4 17.5 60 486-545 35-106 (287)
469 KOG2247 WD40 repeat-containing 85.6 0.13 2.9E-06 54.7 -2.0 135 357-521 40-175 (615)
470 KOG2817 Predicted E3 ubiquitin 84.2 3.9 8.5E-05 42.9 7.8 122 3-138 116-240 (394)
471 PF12657 TFIIIC_delta: Transcr 83.9 9.4 0.0002 36.1 10.0 31 422-452 86-122 (173)
472 PF13449 Phytase-like: Esteras 83.6 63 0.0014 34.0 22.9 102 464-566 20-165 (326)
473 PF12768 Rax2: Cortical protei 83.4 36 0.00078 34.9 14.5 112 485-597 16-144 (281)
474 PF07569 Hira: TUP1-like enhan 83.3 7.7 0.00017 38.3 9.4 28 555-582 18-45 (219)
475 COG4590 ABC-type uncharacteriz 83.1 34 0.00074 36.7 14.1 160 462-658 219-391 (733)
476 PF03022 MRJP: Major royal jel 83.0 60 0.0013 33.4 21.6 154 423-578 2-216 (287)
477 KOG1900 Nuclear pore complex, 82.9 12 0.00026 45.3 12.0 92 482-576 96-204 (1311)
478 COG4257 Vgb Streptogramin lyas 82.7 57 0.0012 32.9 20.1 154 423-579 63-220 (353)
479 PF05935 Arylsulfotrans: Aryls 82.6 87 0.0019 34.9 19.6 150 427-580 153-370 (477)
480 KOG4460 Nuclear pore complex, 82.5 28 0.00061 38.1 13.4 98 549-660 105-205 (741)
481 PF12768 Rax2: Cortical protei 82.2 25 0.00055 36.0 12.8 71 526-597 15-96 (281)
482 COG4590 ABC-type uncharacteriz 81.1 5.3 0.00011 42.5 7.4 166 416-584 215-393 (733)
483 PF12657 TFIIIC_delta: Transcr 80.7 9.1 0.0002 36.2 8.6 30 506-535 86-121 (173)
484 TIGR03548 mutarot_permut cycli 80.5 75 0.0016 33.2 16.5 65 474-539 123-198 (323)
485 PF02333 Phytase: Phytase; In 80.4 87 0.0019 33.5 20.9 135 443-578 127-291 (381)
486 PF08801 Nucleoporin_N: Nup133 80.2 68 0.0015 35.1 16.5 31 548-578 190-220 (422)
487 COG5290 IkappaB kinase complex 79.8 52 0.0011 38.0 14.8 223 330-559 90-348 (1243)
488 TIGR03547 muta_rot_YjhT mutatr 79.7 87 0.0019 33.1 22.3 12 473-484 117-128 (346)
489 PF07250 Glyoxal_oxid_N: Glyox 79.6 23 0.00051 35.4 11.3 140 445-587 48-207 (243)
490 PLN02193 nitrile-specifier pro 79.6 1.1E+02 0.0023 34.1 18.8 105 474-580 278-413 (470)
491 PF14761 HPS3_N: Hermansky-Pud 79.3 43 0.00093 32.6 12.4 100 477-579 30-165 (215)
492 PF02333 Phytase: Phytase; In 78.7 99 0.0021 33.1 22.6 143 431-577 66-237 (381)
493 PF11715 Nup160: Nucleoporin N 78.6 9.7 0.00021 43.4 9.5 39 422-460 215-257 (547)
494 TIGR03606 non_repeat_PQQ dehyd 78.0 86 0.0019 34.6 15.9 115 455-569 21-167 (454)
495 PF08801 Nucleoporin_N: Nup133 77.4 67 0.0015 35.1 15.4 24 632-655 198-221 (422)
496 COG5276 Uncharacterized conser 76.9 92 0.002 31.8 28.2 200 345-578 80-286 (370)
497 PF11715 Nup160: Nucleoporin N 76.7 8.9 0.00019 43.7 8.5 72 515-586 156-257 (547)
498 PF10395 Utp8: Utp8 family; I 76.6 1.5E+02 0.0033 34.1 24.9 120 463-586 129-268 (670)
499 PF10607 CLTH: CTLH/CRA C-term 76.5 3.4 7.3E-05 37.7 4.1 65 90-154 36-103 (145)
500 COG1520 FOG: WD40-like repeat 76.0 1.2E+02 0.0025 32.5 22.8 154 432-588 111-279 (370)
No 1
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.1e-100 Score=810.26 Aligned_cols=634 Identities=40% Similarity=0.680 Sum_probs=507.6
Q ss_pred CchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCCCCC--CCC-----------------CC-C-------Cchhhhcc
Q 005277 1 MDELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNT--NPI-----------------DI-L-------NDPELSKF 53 (704)
Q Consensus 1 ~~~~~~~~~v~~yl~~~~~~~~~~~~~~e~~~~~~~~~~--~~~-----------------~~-~-------~~~~~~~~ 53 (704)
+.+++++++|++||+|+||++||++||+|+.+..++... +.. ++ . ...++...
T Consensus 19 ~~~~~~n~~v~~yl~~~~y~~te~~l~~e~~l~s~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 98 (707)
T KOG0263|consen 19 SHTRDLNRIVLEYLRKKKYSRTEEMLRQEANLPSRPVNGMPAEPDYDREQFEALPPIGLPKENADDETPQGLSSSAVPVE 98 (707)
T ss_pred cchHHHHHHHHHHHhhhcccccchhhhhhhcccccccCCCccccchhhhhhhccCCccccccccCCcccccccccCchhh
Confidence 356899999999999999999999999999876664321 110 00 0 00111111
Q ss_pred ccccccccC--ChhhHHHHHHHHHHHHhhccccchhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhHHhhhHHH
Q 005277 54 FRTFSESED--GPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRD 131 (704)
Q Consensus 54 ~~~~~~~~~--~~~~~~~~~~~l~~~~~~~ld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~~~~~~~ 131 (704)
.. .... -|.+|+..|..||+||+.|||+||+||.+||||+|||+||+|+++++.+.||.||++|+.||..+|+++
T Consensus 99 ~~---~~~~~~~~~~ye~~y~~lk~~ve~Sldi~k~El~~iLypifv~~yldl~~~~~~~~a~~Ffe~f~~d~~~~~~e~ 175 (707)
T KOG0263|consen 99 KA---LWSAEEIPDQYEHVYSELKTWVEDSLDIYKAELSPILYPIFVHSYLDLVQKSAYETAKSFFERFRGDHKVYHSES 175 (707)
T ss_pred hc---cccccCCChhHhhhhhhcchhhhCcchhhhHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHhccchhhhhhHH
Confidence 11 1123 488899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCChhhhccCHHHHHhhcCceEEEEchhhHHHHHHHHhhcCc---chHHHhhcceeEEEEccCC-CCCCCcccc
Q 005277 132 LQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQS---TKMLGIINERINFQVSPGQ-PSSISDDAE 207 (704)
Q Consensus 132 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~i~~~~~~~~~~~~~-~~~~~~~~~ 207 (704)
|.+|..+..++||++|+.++.||+|||+|+|++.+|++|++||++.+. .+|+.|||+||.|+++++. ++....+..
T Consensus 176 i~~l~~~~~~~~i~~ne~~~~~~~~ky~i~~sr~s~~lL~~~l~~~~~~~g~~i~~ii~~hldi~v~~~~~~r~~~~~~~ 255 (707)
T KOG0263|consen 176 IFQLLSLETIKHIKENETARAFRKNKYVIRLSRDSFDLLLRFLQEDNNIGGTIIIKIINQHLDIDVFDGVMARRTTKPTA 255 (707)
T ss_pred HHHHHhhhhHHHHhhhhhHHHHhhCcEEEEecHHHHHHHHHHhhhhccccchHHHHHHHHHhCccccccccccccccchh
Confidence 999999999999999999999999999999999999999999999877 8999999999999999872 333332222
Q ss_pred hh-----hcccCCchhhhccccCceeecCCcchhhhhhhhccccccchhhhcccchhhhccccCCCCCCCCCCchhhhhh
Q 005277 208 IV-----TLIGSNQDAANQINQKEVHWGLLEDSLENRLEKTGLISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKKLK 282 (704)
Q Consensus 208 ~~-----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (704)
.+ .++|. +..+.|+.++++|+++.+.+ ++++..... +.+ +. +.++.... .++.+
T Consensus 256 ~~g~~~~~i~g~---~~~e~~~~~~~l~~~~~e~~--~~~~~~~~~----e~~--D~--------~~~~~~~~--~~~~~ 314 (707)
T KOG0263|consen 256 MVGSEQESIAGE---AKREINKQKVQLGLLLKEEE--IEKKLPILL----EVE--DD--------PNEPDNEK--LKKPK 314 (707)
T ss_pred hccccccccccc---chhhcccceeeecccccchh--hhhcccccc----cCc--cc--------cccccccc--cccch
Confidence 22 35553 34556788999999998443 444321111 011 00 11111000 11111
Q ss_pred hHHhhhhcccccccccCcCCCCCCCCCCCCCCCCCh---hHHHHHHHhccCeEeecCCCCCCeEEEEEeeCCCCEEEEEE
Q 005277 283 KDKAINATAKTSRLEANTVSTAPRVKPDLALPVMPT---EVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASI 359 (704)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~lp~~~~---~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~f 359 (704)
+.+.... ....+++ +|. .+.+|+|+... ..+.+.+++.++++.+....+|++|+||++++..+++|+.|
T Consensus 315 ~~~~~~~---~k~~d~~----~ps-~d~iPlPp~~~~d~~~~~~~l~d~~kr~~l~~~~lpSic~YT~~nt~~~v~ca~f 386 (707)
T KOG0263|consen 315 KKKLLSE---EKKRDPN----APS-RDRIPLPPLKQVDKLAELEALKDEQKRVKLGRNSLPSICMYTFHNTYQGVTCAEF 386 (707)
T ss_pred hhhhhhh---hhccccC----CCc-cccCCCCcccchhHHHHHHHHHHHHHHhhcCCCCCCcEEEEEEEEcCCcceeEee
Confidence 1111110 1111122 232 67888887665 66778899999999999999999999999999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCC---CCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEE
Q 005277 360 SQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDT---TPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFI 436 (704)
Q Consensus 360 s~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l 436 (704)
|+|+++||.|+.|.+|++|.+...+.............. ..................+.||++||+++.|+|+.++|
T Consensus 387 SddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfL 466 (707)
T KOG0263|consen 387 SDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFL 466 (707)
T ss_pred cCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecccccce
Confidence 999999999999999999999864322221111100000 00001111223344556699999999999999999999
Q ss_pred EEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCC
Q 005277 437 LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHIN 516 (704)
Q Consensus 437 ~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~ 516 (704)
++||.|++||+|++++..+++.|++|..|||++.|+|.|.||||||.|++.++|..+...+++++.+|.++|.|+.||||
T Consensus 467 lScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPN 546 (707)
T KOG0263|consen 467 LSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPN 546 (707)
T ss_pred eeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeee
Q 005277 517 CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLA 596 (704)
Q Consensus 517 ~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~ 596 (704)
++|+++||.|.+||+||+.+|..++.|.||.++|++++|||+|++|++|+.||.|.+||+.+++++..+.+|++.|+++.
T Consensus 547 s~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~Sls 626 (707)
T KOG0263|consen 547 SNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLS 626 (707)
T ss_pred ccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccc---------cccCc
Q 005277 597 YRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTE---------EKSGT 667 (704)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~---------~~~~~ 667 (704)
| |.+|.+||+||.|++|++||+.......... .....
T Consensus 627 F----------------------------------S~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (707)
T KOG0263|consen 627 F----------------------------------SRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENN 672 (707)
T ss_pred E----------------------------------ecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCC
Confidence 9 9999999999999999999998765441110 01122
Q ss_pred cccccccccCCCCcCeEEEEEccCCcEEEEeec
Q 005277 668 NRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL 700 (704)
Q Consensus 668 ~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~ 700 (704)
....++.++.++.+||.+|.|++++.+|++|..
T Consensus 673 ~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g~~ 705 (707)
T KOG0263|consen 673 ASSLLLGSFYTKNTPVVGLHFTRRNLLLAVGPF 705 (707)
T ss_pred CCcceeeeeeecCceEEEEEEeccceeEEeccc
Confidence 334578899999999999999999999999875
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.4e-46 Score=366.98 Aligned_cols=283 Identities=31% Similarity=0.583 Sum_probs=256.8
Q ss_pred eEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCc
Q 005277 342 VSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS 421 (704)
Q Consensus 342 ~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 421 (704)
.|--.+.+|.+.|.|++|+|+|..||+|+.|.++|+||+.+ ........+|.
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~T----------------------------eTp~~t~KgH~ 157 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDT----------------------------ETPLFTCKGHK 157 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCC----------------------------CCcceeecCCc
Confidence 34446789999999999999999999999999999999986 34556778999
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee-EEeecCCcCeeEEEEcC-----CCCEEEEEeCCCeEEEEECCCC
Q 005277 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL-VCYKGHNYPVWDVQFNP-----QGHYFASSSHDRTARIWSMDRI 495 (704)
Q Consensus 422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~-~~~~~h~~~V~~v~~sp-----~~~~l~sgs~dg~i~lwd~~~~ 495 (704)
..|.|++|+|||+.|++|+.||+|++||..+++++ ..+.+|...|++++|.| ..++|++++.||+++|||+..+
T Consensus 158 ~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~ 237 (480)
T KOG0271|consen 158 NWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG 237 (480)
T ss_pred cEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc
Confidence 99999999999999999999999999999988775 67899999999999987 5679999999999999999999
Q ss_pred ceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEE----------------------------------
Q 005277 496 QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVR---------------------------------- 541 (704)
Q Consensus 496 ~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~---------------------------------- 541 (704)
..+..+.+|..+|+|++|--+ .+|++|+.|++|++|+...|.+.+
T Consensus 238 ~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~ 316 (480)
T KOG0271|consen 238 TCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKS 316 (480)
T ss_pred eEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCC
Confidence 999999999999999999654 499999999999999976654322
Q ss_pred ---------------------------------------------EeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 005277 542 ---------------------------------------------IFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576 (704)
Q Consensus 542 ---------------------------------------------~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl 576 (704)
.+.+|..-|..+.||||++++|+++.|..|++||.
T Consensus 317 ~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g 396 (480)
T KOG0271|consen 317 FSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDG 396 (480)
T ss_pred hHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeC
Confidence 13567888999999999999999999999999999
Q ss_pred CCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCc
Q 005277 577 ASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTST 656 (704)
Q Consensus 577 ~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~ 656 (704)
++|+.+.++++|-..|+.++| +.|.++|++||.|.++++|++.+.+
T Consensus 397 ~tGk~lasfRGHv~~VYqvaw----------------------------------saDsRLlVS~SkDsTLKvw~V~tkK 442 (480)
T KOG0271|consen 397 RTGKFLASFRGHVAAVYQVAW----------------------------------SADSRLLVSGSKDSTLKVWDVRTKK 442 (480)
T ss_pred CCcchhhhhhhccceeEEEEe----------------------------------ccCccEEEEcCCCceEEEEEeeeee
Confidence 999999999999999999999 9999999999999999999999864
Q ss_pred cccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277 657 KVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 702 (704)
Q Consensus 657 ~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg 702 (704)
....+++|...|+++.|+|||..+|+|+.|+
T Consensus 443 ---------------l~~DLpGh~DEVf~vDwspDG~rV~sggkdk 473 (480)
T KOG0271|consen 443 ---------------LKQDLPGHADEVFAVDWSPDGQRVASGGKDK 473 (480)
T ss_pred ---------------ecccCCCCCceEEEEEecCCCceeecCCCce
Confidence 3567899999999999999999999999886
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.7e-45 Score=365.94 Aligned_cols=280 Identities=30% Similarity=0.504 Sum_probs=265.6
Q ss_pred EeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEE
Q 005277 347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (704)
Q Consensus 347 ~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 426 (704)
-.+-..+|..+.||+|++.||||+.+|.++||+... ......+.||++.|.+
T Consensus 171 Q~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~----------------------------~~~~~~l~gH~~~v~~ 222 (459)
T KOG0272|consen 171 QVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQ----------------------------CNLLQTLRGHTSRVGA 222 (459)
T ss_pred hccCCCcceeeEeecCCCeEEEeecCCceeEeecCC----------------------------cceeEEEeccccceee
Confidence 356677899999999999999999999999999875 3466889999999999
Q ss_pred EEEcCC--CCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccC
Q 005277 427 ASFSPL--GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH 504 (704)
Q Consensus 427 l~~sp~--~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~ 504 (704)
+.|+|. +..++||+.||++++|++.+...+..+.+|...|..++|+|+|++++|++.|.+.++||++++..+....||
T Consensus 223 ~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGH 302 (459)
T KOG0272|consen 223 AVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGH 302 (459)
T ss_pred EEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhccc
Confidence 999997 558999999999999999999999999999999999999999999999999999999999999999888999
Q ss_pred CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeee
Q 005277 505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP 584 (704)
Q Consensus 505 ~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~ 584 (704)
...|.+++|+|+|..+++|+.|..-+|||+++|+++..+.+|...|.+++|+|+|..||||+.|++++|||++..+.+.+
T Consensus 303 s~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ 382 (459)
T KOG0272|consen 303 SKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYT 382 (459)
T ss_pred ccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCC-CCCEEEEEeCCCcEEEEeCCCCcccccccc
Q 005277 585 LMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASC-EGSLLASGSADCTVKLWDVTTSTKVLKTEE 663 (704)
Q Consensus 585 ~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~ 663 (704)
+.+|..-|+.+.| +| .|.+|+|+|.|++++||.-.+.
T Consensus 383 ipAH~nlVS~Vk~----------------------------------~p~~g~fL~TasyD~t~kiWs~~~~-------- 420 (459)
T KOG0272|consen 383 IPAHSNLVSQVKY----------------------------------SPQEGYFLVTASYDNTVKIWSTRTW-------- 420 (459)
T ss_pred cccccchhhheEe----------------------------------cccCCeEEEEcccCcceeeecCCCc--------
Confidence 9999999999999 87 7899999999999999998775
Q ss_pred ccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 664 KSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 664 ~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
.++.++.+|.+.|.++..++++.+++++++|+|
T Consensus 421 -------~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT 453 (459)
T KOG0272|consen 421 -------SPLKSLAGHEGKVISLDISPDSQAIATSSFDRT 453 (459)
T ss_pred -------ccchhhcCCccceEEEEeccCCceEEEeccCce
Confidence 457889999999999999999999999999986
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.1e-41 Score=334.09 Aligned_cols=260 Identities=25% Similarity=0.456 Sum_probs=243.7
Q ss_pred cCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccC
Q 005277 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQD--GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG 406 (704)
Q Consensus 329 ~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~d--g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (704)
...+++|+.+.- ....++.+|...|.++.|+|. +..||+|+.||+|++|+++.
T Consensus 196 sG~~kvW~~~~~-~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~------------------------ 250 (459)
T KOG0272|consen 196 SGLVKVWSVPQC-NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ------------------------ 250 (459)
T ss_pred CCceeEeecCCc-ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC------------------------
Confidence 345667765443 445678999999999999997 66999999999999999875
Q ss_pred CCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCe
Q 005277 407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT 486 (704)
Q Consensus 407 ~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~ 486 (704)
...+..+.||...|..++|+|+|++|+|+|.|.+-++||+.++..+....||...|.+++|.|+|..++|||.|..
T Consensus 251 ----e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~ 326 (459)
T KOG0272|consen 251 ----ETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSL 326 (459)
T ss_pred ----CcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccch
Confidence 2455678899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEec-CCCEEEEE
Q 005277 487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP-DGRYMASG 565 (704)
Q Consensus 487 i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~sp-dg~~l~sg 565 (704)
-+|||+++++++..+.+|..+|.+|+|+|+|..||||+.|++++|||++..+++.++.+|.+-|+.++|+| .|.+|+++
T Consensus 327 ~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Ta 406 (459)
T KOG0272|consen 327 GRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTA 406 (459)
T ss_pred hheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 78999999
Q ss_pred eCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCC
Q 005277 566 DEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADC 645 (704)
Q Consensus 566 ~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg 645 (704)
+.|++++||...++.+++++.||.+.|.+++. ++++.+++|++.|.
T Consensus 407 syD~t~kiWs~~~~~~~ksLaGHe~kV~s~Di----------------------------------s~d~~~i~t~s~DR 452 (459)
T KOG0272|consen 407 SYDNTVKIWSTRTWSPLKSLAGHEGKVISLDI----------------------------------SPDSQAIATSSFDR 452 (459)
T ss_pred ccCcceeeecCCCcccchhhcCCccceEEEEe----------------------------------ccCCceEEEeccCc
Confidence 99999999999999999999999999999999 99999999999999
Q ss_pred cEEEEe
Q 005277 646 TVKLWD 651 (704)
Q Consensus 646 ~V~iWd 651 (704)
++++|.
T Consensus 453 T~KLW~ 458 (459)
T KOG0272|consen 453 TIKLWR 458 (459)
T ss_pred eeeecc
Confidence 999995
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3e-39 Score=307.69 Aligned_cols=281 Identities=25% Similarity=0.394 Sum_probs=254.5
Q ss_pred EEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCe
Q 005277 345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (704)
Q Consensus 345 ~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 424 (704)
.++.+|.+.|.|+.|++|+++|++++.||.+.|||.-+. .....+.-.+..|
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Tt----------------------------nK~haipl~s~WV 100 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTT----------------------------NKVHAIPLPSSWV 100 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccc----------------------------cceeEEecCceeE
Confidence 568999999999999999999999999999999997651 1222233356789
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCC------ceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCcee
Q 005277 425 YSASFSPLGDFILSSSADTTIRLWSTKLN------ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL 498 (704)
Q Consensus 425 ~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~------~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~ 498 (704)
..++|+|.++++++|+.|+...||++.+. .....+.+|++.+.++.|-+ ...++|++.|.++.+||+++++.+
T Consensus 101 MtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~ 179 (343)
T KOG0286|consen 101 MTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQT 179 (343)
T ss_pred EEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEE
Confidence 99999999999999999999999999865 33456889999999999997 456899999999999999999999
Q ss_pred EEeccCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 005277 499 RIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA 577 (704)
Q Consensus 499 ~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~ 577 (704)
..|.+|.++|.++.++| +++.+++|+.|+..++||+|.+.+++.|.+|...|++++|.|+|.-+++|++|+++++||++
T Consensus 180 ~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlR 259 (343)
T KOG0286|consen 180 QVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLR 259 (343)
T ss_pred EEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeec
Confidence 99999999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeeeecCC--CceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCC
Q 005277 578 SGRCVTPLMGH--TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTS 655 (704)
Q Consensus 578 ~~~~~~~~~~h--~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~ 655 (704)
..+.+..+... ..+|++++| |..|++|++|..|.++.+||.-.+
T Consensus 260 aD~~~a~ys~~~~~~gitSv~F----------------------------------S~SGRlLfagy~d~~c~vWDtlk~ 305 (343)
T KOG0286|consen 260 ADQELAVYSHDSIICGITSVAF----------------------------------SKSGRLLFAGYDDFTCNVWDTLKG 305 (343)
T ss_pred CCcEEeeeccCcccCCceeEEE----------------------------------cccccEEEeeecCCceeEeecccc
Confidence 99988888643 368899999 999999999999999999999887
Q ss_pred ccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 656 TKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 656 ~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
+. +..+.+|...|.+|..+|||..+++|++|.+
T Consensus 306 e~---------------vg~L~GHeNRvScl~~s~DG~av~TgSWDs~ 338 (343)
T KOG0286|consen 306 ER---------------VGVLAGHENRVSCLGVSPDGMAVATGSWDST 338 (343)
T ss_pred ce---------------EEEeeccCCeeEEEEECCCCcEEEecchhHh
Confidence 54 5677799999999999999999999999864
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.2e-40 Score=322.54 Aligned_cols=277 Identities=30% Similarity=0.494 Sum_probs=236.9
Q ss_pred ccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEE
Q 005277 411 KRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIW 490 (704)
Q Consensus 411 ~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lw 490 (704)
.++...+.||.++|.|+.|+|++..|++|+.|.++|+||+.+..+..+.++|...|.|++|+|||+.+|+|+.||+|++|
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLW 184 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEe
Confidence 34556788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCcee-EEeccCCCCeeEEEEcC-----CCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEE
Q 005277 491 SMDRIQPL-RIMAGHLSDVDCVRWHI-----NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMAS 564 (704)
Q Consensus 491 d~~~~~~~-~~~~~~~~~V~~v~~~p-----~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s 564 (704)
|..+++++ +.+.+|...|++++|.| .+.+||+++.||+|+|||+..+.++..+.+|..+|+|+.|--+| +|++
T Consensus 185 dpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liyS 263 (480)
T KOG0271|consen 185 DPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYS 263 (480)
T ss_pred cCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEe
Confidence 99887765 67899999999999986 67899999999999999999999999999999999999997544 8999
Q ss_pred EeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehc-c---------------------------------------
Q 005277 565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLV-T--------------------------------------- 604 (704)
Q Consensus 565 g~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~-~--------------------------------------- 604 (704)
|+.|++|++|+...|.+...+++|...|..++.+.-... .
T Consensus 264 gS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs 343 (480)
T KOG0271|consen 264 GSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS 343 (480)
T ss_pred cCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec
Confidence 999999999999999999999999999998887411110 0
Q ss_pred -cccccccccccccee----eeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCC
Q 005277 605 -NAYLKISDKVSTGFL----FYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTK 679 (704)
Q Consensus 605 -~~~~~~~~~~~~~~~----~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 679 (704)
+..+.+|+....... ......++...+|||++++|++|-|.+|++|+-.+++ .+.++++|
T Consensus 344 Dd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk---------------~lasfRGH 408 (480)
T KOG0271|consen 344 DDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGK---------------FLASFRGH 408 (480)
T ss_pred CCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcc---------------hhhhhhhc
Confidence 011112221111100 1111134455679999999999999999999999985 47899999
Q ss_pred CcCeEEEEEccCCcEEEEeecCCC
Q 005277 680 STPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 680 ~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
-.+|+.++|+.|.++|++|+.|.|
T Consensus 409 v~~VYqvawsaDsRLlVS~SkDsT 432 (480)
T KOG0271|consen 409 VAAVYQVAWSADSRLLVSGSKDST 432 (480)
T ss_pred cceeEEEEeccCccEEEEcCCCce
Confidence 999999999999999999999976
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-37 Score=291.80 Aligned_cols=294 Identities=26% Similarity=0.407 Sum_probs=250.8
Q ss_pred EEEeeCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC
Q 005277 345 YTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (704)
Q Consensus 345 ~~~~~~~~~V~~~~fs~d-g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 423 (704)
-++.+|.+.|+.++..+. ...+.+++.|..+.+|++... ....+...+.+.||+..
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d-----------------------d~~~G~~~r~~~GHsH~ 65 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD-----------------------DIKYGVPVRRLTGHSHF 65 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC-----------------------ccccCceeeeeeccceE
Confidence 367899999999999887 678999999999999999762 11224567889999999
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc
Q 005277 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG 503 (704)
Q Consensus 424 V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~ 503 (704)
|..+..++++++.++++.|+++++||+.+++..+.|.+|...|.+++|+|+++.+++|+.|+++.+|++-..........
T Consensus 66 v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~ 145 (315)
T KOG0279|consen 66 VSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHED 145 (315)
T ss_pred ecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999977544444333
Q ss_pred -CCCCeeEEEEcCC--CCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCe
Q 005277 504 -HLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR 580 (704)
Q Consensus 504 -~~~~V~~v~~~p~--~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~ 580 (704)
+...|.|++|+|+ ..+|++++.|++|++||+++.+....+.+|.+.++.+++||||..+++|+.||.+.+||++.++
T Consensus 146 ~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k 225 (315)
T KOG0279|consen 146 SHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK 225 (315)
T ss_pred CCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCc
Confidence 2788999999998 7899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccc
Q 005277 581 CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLK 660 (704)
Q Consensus 581 ~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~ 660 (704)
.+..+. |...|.++.| +|+.-.|+.+.. ..|+|||+.++..+..
T Consensus 226 ~lysl~-a~~~v~sl~f----------------------------------spnrywL~~at~-~sIkIwdl~~~~~v~~ 269 (315)
T KOG0279|consen 226 NLYSLE-AFDIVNSLCF----------------------------------SPNRYWLCAATA-TSIKIWDLESKAVVEE 269 (315)
T ss_pred eeEecc-CCCeEeeEEe----------------------------------cCCceeEeeccC-CceEEEeccchhhhhh
Confidence 977664 7889999999 998877766654 4699999999887655
Q ss_pred cccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 661 TEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 661 ~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
........ ......-...+++|++||..|.+|-.|+.
T Consensus 270 l~~d~~g~------s~~~~~~~clslaws~dG~tLf~g~td~~ 306 (315)
T KOG0279|consen 270 LKLDGIGP------SSKAGDPICLSLAWSADGQTLFAGYTDNV 306 (315)
T ss_pred cccccccc------ccccCCcEEEEEEEcCCCcEEEeeecCCc
Confidence 43321100 12222223467899999999999988863
No 8
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=7e-39 Score=317.38 Aligned_cols=278 Identities=26% Similarity=0.498 Sum_probs=251.0
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEE
Q 005277 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (704)
Q Consensus 350 ~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 429 (704)
...+|..+.|.|+|+.|++|+..|.+.+|+... ......++.|..+|.++.|
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~----------------------------fnFEtilQaHDs~Vr~m~w 146 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS----------------------------FNFETILQAHDSPVRTMKW 146 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCce----------------------------eeHHHHhhhhcccceeEEE
Confidence 345799999999999999999999999999653 2334567899999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCceeEEeecC-CcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCe
Q 005277 430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKGH-NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDV 508 (704)
Q Consensus 430 sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h-~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V 508 (704)
++++.+++||+.+|.|++|+.. ...+..+..| ...|++++|+|+...|++|+.||+|+|||....+..+.+.+|.-.|
T Consensus 147 s~~g~wmiSgD~gG~iKyWqpn-mnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdV 225 (464)
T KOG0284|consen 147 SHNGTWMISGDKGGMIKYWQPN-MNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDV 225 (464)
T ss_pred ccCCCEEEEcCCCceEEecccc-hhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCc
Confidence 9999999999999999999988 4445555554 5899999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCC
Q 005277 509 DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588 (704)
Q Consensus 509 ~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h 588 (704)
.|+.|||....|++|+.|..|++||.++|.|+.++.+|+..|..+.|+|++++|++++.|..++++|+++.+.+.++++|
T Consensus 226 ksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~H 305 (464)
T KOG0284|consen 226 KSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGH 305 (464)
T ss_pred ceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCC-CCCEEEEEeCCCcEEEEeCCCCccccccccccCc
Q 005277 589 TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASC-EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGT 667 (704)
Q Consensus 589 ~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~ 667 (704)
...|+++.| +| ...+|.+|+.||.|..|.+.....+
T Consensus 306 kkdv~~~~W----------------------------------hP~~~~lftsgg~Dgsvvh~~v~~~~p~--------- 342 (464)
T KOG0284|consen 306 KKDVTSLTW----------------------------------HPLNESLFTSGGSDGSVVHWVVGLEEPL--------- 342 (464)
T ss_pred hhhheeecc----------------------------------ccccccceeeccCCCceEEEeccccccc---------
Confidence 999999999 55 3568999999999999999844332
Q ss_pred cccccccccCCCCcCeEEEEEccCCcEEEEeecCCCC
Q 005277 668 NRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKTS 704 (704)
Q Consensus 668 ~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt~ 704 (704)
...-+.|.+.|.+++|+|=|.+||+|+.|.|+
T Consensus 343 -----~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~ 374 (464)
T KOG0284|consen 343 -----GEIPPAHDGEIWSLAYHPLGHILATGSNDRTV 374 (464)
T ss_pred -----cCCCcccccceeeeeccccceeEeecCCCcce
Confidence 22345789999999999999999999999874
No 9
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.5e-37 Score=310.38 Aligned_cols=274 Identities=27% Similarity=0.502 Sum_probs=251.7
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEE
Q 005277 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (704)
Q Consensus 350 ~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 429 (704)
....|+|++|+.+|++||+|+.||.++||+... .....+..|++||.++.|
T Consensus 234 ~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G-----------------------------~l~~tl~~HkgPI~slKW 284 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDGTLLATGSEDGEARIWNKDG-----------------------------NLISTLGQHKGPIFSLKW 284 (524)
T ss_pred ccCCcceEEecCCCCeEEEeecCcEEEEEecCc-----------------------------hhhhhhhccCCceEEEEE
Confidence 346799999999999999999999999999764 455667889999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCee
Q 005277 430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVD 509 (704)
Q Consensus 430 sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~ 509 (704)
+..|.||++++.|+++.+||..++...+.+.-|..+-.+|.|- +..-|++++.|+.|+++.+....|+.++.+|.+.|.
T Consensus 285 nk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~-~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~ 363 (524)
T KOG0273|consen 285 NKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ-SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVN 363 (524)
T ss_pred cCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEe-cCceEeecCCCceEEEEEecCCCcceeeecccCceE
Confidence 9999999999999999999999999999999999987889997 445699999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCC---------CEEEEEeCCCeEEEEeCCCCe
Q 005277 510 CVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG---------RYMASGDEDGTIMMWDLASGR 580 (704)
Q Consensus 510 ~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg---------~~l~sg~~dg~I~iwdl~~~~ 580 (704)
++.|+|.+.+|++++.|++++||......+...+.+|...|..+.|+|.| ..+++++.|++|++||+..+.
T Consensus 364 alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv 443 (524)
T KOG0273|consen 364 ALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGV 443 (524)
T ss_pred EEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCc
Confidence 99999999999999999999999999999999999999999999999965 478999999999999999999
Q ss_pred eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccc
Q 005277 581 CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLK 660 (704)
Q Consensus 581 ~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~ 660 (704)
++..+..|+.+|++++| +|+|+++|+|+.||.|+||++.+++..
T Consensus 444 ~i~~f~kH~~pVysvaf----------------------------------S~~g~ylAsGs~dg~V~iws~~~~~l~-- 487 (524)
T KOG0273|consen 444 PIHTLMKHQEPVYSVAF----------------------------------SPNGRYLASGSLDGCVHIWSTKTGKLV-- 487 (524)
T ss_pred eeEeeccCCCceEEEEe----------------------------------cCCCcEEEecCCCCeeEeccccchhee--
Confidence 99999999999999999 999999999999999999999987543
Q ss_pred cccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 661 TEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 661 ~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
..+ ...+.|..|+|+.+|..|+++..|+.
T Consensus 488 -------------~s~-~~~~~Ifel~Wn~~G~kl~~~~sd~~ 516 (524)
T KOG0273|consen 488 -------------KSY-QGTGGIFELCWNAAGDKLGACASDGS 516 (524)
T ss_pred -------------Eee-cCCCeEEEEEEcCCCCEEEEEecCCC
Confidence 233 34556999999999999998888774
No 10
>cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID). The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various
Probab=100.00 E-value=1.2e-38 Score=286.99 Aligned_cols=132 Identities=44% Similarity=0.815 Sum_probs=129.3
Q ss_pred hhhHHHHHHHHHHHHhhccccchhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhHHhhhHHHHHHHhcCCChhh
Q 005277 64 PARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSH 143 (704)
Q Consensus 64 ~~~~~~~~~~l~~~~~~~ld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~ 143 (704)
|..|+++|.+||+||+++||+||+||.++||||||||||+||++|+.++|++||++|+++|+..|+++|++|++|++|+|
T Consensus 1 ~~~y~~~y~~l~~wv~~~ld~~k~EL~~lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~ 80 (133)
T cd08044 1 PNDYEQAYSKLRKWIESSLDIYKYELSQLLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSITTPEH 80 (133)
T ss_pred ChHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccCCHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHhhcCceEEEEchhhHHHHHHHHhhcCcchHHHhhcceeEEEEc
Q 005277 144 LEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQVS 195 (704)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~ 195 (704)
+++|++++.||+|||+|+||++++++|++||++.++.++++|||+|+.+++.
T Consensus 81 l~~n~~~~~~r~~Ky~i~ms~~s~~lL~~~L~~~~~~~~~~il~~~i~~~~~ 132 (133)
T cd08044 81 LKENELAKLFRSNKYVIRMSRDAYSLLLRFLESWGGSLLLKILNEHIDIDVR 132 (133)
T ss_pred HhhhHHHHHHHhCCEEEEECHHHHHHHHHHHHHCCcHHHHHHHHhccccccc
Confidence 9999999999999999999999999999999999999999999999888764
No 11
>PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID. The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F.
Probab=100.00 E-value=2.8e-38 Score=287.66 Aligned_cols=133 Identities=44% Similarity=0.821 Sum_probs=123.8
Q ss_pred cccCChhhHHHHHHHHHHHHhhccccchhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhHHhhhHHHHHHHhcC
Q 005277 59 ESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGV 138 (704)
Q Consensus 59 ~~~~~~~~~~~~~~~l~~~~~~~ld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~~~~~~~~~~l~~~ 138 (704)
..+.||+.|+++|.+|++||++|||+||+||.++||||||||||+||++|+.++|++||+||+++|...|.++|++|+.|
T Consensus 7 ~~~~~p~~y~~~y~~l~~wv~~sld~yK~EL~~lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~i 86 (142)
T PF04494_consen 7 IEENDPDKYEQAYSRLRNWVDNSLDIYKPELSRLLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSSI 86 (142)
T ss_dssp SS---GCCHHHHHHHHHHHHHTS-HHHHHHHGGGHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT-
T ss_pred cccCCHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhccCHHHHHhhcCceEEEEchhhHHHHHHHHhhcCcc---hHHHhhcceeE
Q 005277 139 LSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQST---KMLGIINERIN 191 (704)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---~~~~i~~~~~~ 191 (704)
++|+|+++|++++.||++||+|+||+.++.+|+.||++++.. +|++|||+||+
T Consensus 87 ~~~~~l~~~~~~~~~r~~Ky~I~ls~~s~~lL~~fL~~~~~~g~~~ll~iin~~i~ 142 (142)
T PF04494_consen 87 TSPEHLEENELARLFRSNKYVIRLSRDSFSLLLQFLQENENSGGSVLLRIINQHIQ 142 (142)
T ss_dssp -SHHHHHHSHHHHHHHCSGEEEEEEHHHHHHHHHHHHHTTCHTHHHHHHHHHHHEE
T ss_pred CcHHHHhccHHHHHHHhCCeeEEECHHHHHHHHHHHHhCCcchHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999998 99999999985
No 12
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.1e-35 Score=283.30 Aligned_cols=264 Identities=27% Similarity=0.430 Sum_probs=233.8
Q ss_pred CeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCC
Q 005277 330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG 409 (704)
Q Consensus 330 ~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (704)
.++-+|+...... ...+.-...-|..++|+|.|+++|+|+-|....||++..... ++
T Consensus 77 GklIvWDs~TtnK-~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~----------------------~g 133 (343)
T KOG0286|consen 77 GKLIVWDSFTTNK-VHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDA----------------------EG 133 (343)
T ss_pred CeEEEEEcccccc-eeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccc----------------------cc
Confidence 3566666533221 112222345689999999999999999999999999975211 12
Q ss_pred CccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcC-CCCEEEEEeCCCeEE
Q 005277 410 RKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTAR 488 (704)
Q Consensus 410 ~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~ 488 (704)
..+..+.+.+|++-+.|+.|.+|+ .|+++|.|.++.+||+++++.+..|.+|.+.|.+++++| +++.|++|+.|++.+
T Consensus 134 ~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~ak 212 (343)
T KOG0286|consen 134 NVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAK 212 (343)
T ss_pred cceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEeccccccee
Confidence 235667799999999999999854 589999999999999999999999999999999999999 999999999999999
Q ss_pred EEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecC--CCCEEEEEEecCCCEEEEEe
Q 005277 489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH--RSMILSLAMSPDGRYMASGD 566 (704)
Q Consensus 489 lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h--~~~i~~l~~spdg~~l~sg~ 566 (704)
+||++.+..++.|.+|.++|++|+|+|+|.-+++|+.|+++|+||+|..+.+..|... ..+|++++||..|++|++|.
T Consensus 213 lWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy 292 (343)
T KOG0286|consen 213 LWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGY 292 (343)
T ss_pred eeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeee
Confidence 9999999999999999999999999999999999999999999999999999888632 35899999999999999999
Q ss_pred CCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCc
Q 005277 567 EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCT 646 (704)
Q Consensus 567 ~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~ 646 (704)
.|..+.+||.-.++.+..+.+|.+.|.++.. +|||..++|||.|.+
T Consensus 293 ~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~----------------------------------s~DG~av~TgSWDs~ 338 (343)
T KOG0286|consen 293 DDFTCNVWDTLKGERVGVLAGHENRVSCLGV----------------------------------SPDGMAVATGSWDST 338 (343)
T ss_pred cCCceeEeeccccceEEEeeccCCeeEEEEE----------------------------------CCCCcEEEecchhHh
Confidence 9999999999999999999999999999998 999999999999999
Q ss_pred EEEEe
Q 005277 647 VKLWD 651 (704)
Q Consensus 647 V~iWd 651 (704)
++||.
T Consensus 339 lriW~ 343 (343)
T KOG0286|consen 339 LRIWA 343 (343)
T ss_pred eeecC
Confidence 99994
No 13
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=7.8e-36 Score=285.50 Aligned_cols=281 Identities=25% Similarity=0.445 Sum_probs=250.1
Q ss_pred EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (704)
Q Consensus 346 ~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (704)
.+.+|.+.|+++.|+|+|.+||+|+.|..|.+|++... ....-.+.+|++.|.
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gd---------------------------ceN~~~lkgHsgAVM 94 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGD---------------------------CENFWVLKGHSGAVM 94 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccc---------------------------ccceeeeccccceeE
Confidence 45789999999999999999999999999999997641 234456779999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCC-CEEEEEeCCCeEEEEECCCCceeEEeccC
Q 005277 426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRIQPLRIMAGH 504 (704)
Q Consensus 426 ~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~-~~l~sgs~dg~i~lwd~~~~~~~~~~~~~ 504 (704)
.+.|.+|+..|++++.|.+|+.||+++++++..+++|...|..+.-+.-| .++.+|+.||++++||+++..+++.+. .
T Consensus 95 ~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~ 173 (338)
T KOG0265|consen 95 ELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-N 173 (338)
T ss_pred eeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-c
Confidence 99999999999999999999999999999999999999999999855544 457788999999999999988888775 4
Q ss_pred CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCC----e
Q 005277 505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG----R 580 (704)
Q Consensus 505 ~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~----~ 580 (704)
...++++.|...+..+.+|+-|+.|++||++.+....++.||..+|+.+..+|+|.++.+-+.|.++++||++.. +
T Consensus 174 kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R 253 (338)
T KOG0265|consen 174 KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQR 253 (338)
T ss_pred ceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCc
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999853 4
Q ss_pred eeeeecCCC----ceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCc
Q 005277 581 CVTPLMGHT----SCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTST 656 (704)
Q Consensus 581 ~~~~~~~h~----~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~ 656 (704)
++..+.+|. ...-..+| +|+++.+.+|+.|..|++||....
T Consensus 254 ~v~if~g~~hnfeknlL~csw----------------------------------sp~~~~i~ags~dr~vyvwd~~~r- 298 (338)
T KOG0265|consen 254 CVKIFQGHIHNFEKNLLKCSW----------------------------------SPNGTKITAGSADRFVYVWDTTSR- 298 (338)
T ss_pred eEEEeecchhhhhhhcceeec----------------------------------cCCCCccccccccceEEEeecccc-
Confidence 577777654 23334455 999999999999999999998764
Q ss_pred cccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 657 KVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 657 ~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
..+..+++|.+.|.+++|+|...+|.+++.|++
T Consensus 299 --------------~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~ 331 (338)
T KOG0265|consen 299 --------------RILYKLPGHYGSVNEVDFHPTEPIILSCSSDKT 331 (338)
T ss_pred --------------cEEEEcCCcceeEEEeeecCCCcEEEEeccCce
Confidence 357889999999999999999999999999976
No 14
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.7e-36 Score=292.55 Aligned_cols=281 Identities=27% Similarity=0.480 Sum_probs=263.2
Q ss_pred EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (704)
Q Consensus 346 ~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (704)
.+.+|...|+.+-|+|+-.++++++.|++|++||..+ +.....++||...|.
T Consensus 103 ~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~t----------------------------g~~e~~LrGHt~sv~ 154 (406)
T KOG0295|consen 103 KLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTET----------------------------GELERSLRGHTDSVF 154 (406)
T ss_pred hhhccccceeeeeeccCceEEEEecCCceEEEEEccc----------------------------hhhhhhhhcccccee
Confidence 3568999999999999999999999999999999876 334677899999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCC-CceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccC
Q 005277 426 SASFSPLGDFILSSSADTTIRLWSTKL-NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH 504 (704)
Q Consensus 426 ~l~~sp~~~~l~s~s~Dg~I~lwd~~~-~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~ 504 (704)
+++|+..|++|++++.|-.+++||..+ .+++....+|...|.++.|-|.|.++++++.|.+|+.|+++++.++..+.+|
T Consensus 155 di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h 234 (406)
T KOG0295|consen 155 DISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGH 234 (406)
T ss_pred EEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCc
Confidence 999999999999999999999999987 5778888999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecC---------------CCEEEEEeCCC
Q 005277 505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD---------------GRYMASGDEDG 569 (704)
Q Consensus 505 ~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spd---------------g~~l~sg~~dg 569 (704)
...|..++.+.||.++++++.|.+|++|-+.++++...+..|..+|-|++|.|. |.++.+++.|+
T Consensus 235 ~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDk 314 (406)
T KOG0295|consen 235 SEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDK 314 (406)
T ss_pred hHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccc
Confidence 999999999999999999999999999999999999999999999999999872 25899999999
Q ss_pred eEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEE
Q 005277 570 TIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKL 649 (704)
Q Consensus 570 ~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~i 649 (704)
+|++||+.+|.++.++.+|...|..++| +|.|++|+++..|+++++
T Consensus 315 tIk~wdv~tg~cL~tL~ghdnwVr~~af----------------------------------~p~Gkyi~ScaDDktlrv 360 (406)
T KOG0295|consen 315 TIKIWDVSTGMCLFTLVGHDNWVRGVAF----------------------------------SPGGKYILSCADDKTLRV 360 (406)
T ss_pred eEEEEeccCCeEEEEEecccceeeeeEE----------------------------------cCCCeEEEEEecCCcEEE
Confidence 9999999999999999999999999999 999999999999999999
Q ss_pred EeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 650 WDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 650 Wd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
||+.+.+ ++.+++.|..-|+++.|+.+..++++|+.|.+
T Consensus 361 wdl~~~~---------------cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt 399 (406)
T KOG0295|consen 361 WDLKNLQ---------------CMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQT 399 (406)
T ss_pred EEeccce---------------eeeccCCCcceeEEEecCCCCceEEeccccce
Confidence 9999874 46777889999999999999999999998865
No 15
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.3e-35 Score=287.63 Aligned_cols=288 Identities=22% Similarity=0.437 Sum_probs=258.6
Q ss_pred EEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCe
Q 005277 345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (704)
Q Consensus 345 ~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 424 (704)
..+.+|.+-|.|+++.|...++++|+.|++|+|||+.+ +.....+.||...|
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlat----------------------------g~LkltltGhi~~v 196 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLAT----------------------------GQLKLTLTGHIETV 196 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEccc----------------------------CeEEEeecchhhee
Confidence 34678999999999999999999999999999999987 34556788999999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccC
Q 005277 425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH 504 (704)
Q Consensus 425 ~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~ 504 (704)
..+++|+-..||++++.|+.|+.||++..+.++.|.+|-+.|.+++.+|.-..+++|+.|.++++||+++...+..+.||
T Consensus 197 r~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH 276 (460)
T KOG0285|consen 197 RGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGH 276 (460)
T ss_pred eeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeee
Q 005277 505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP 584 (704)
Q Consensus 505 ~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~ 584 (704)
..+|..+.+.|-...+++||.|++|++||++.|+...++..|+..+.+++.+|....+++++.|. |+-|++..|..+..
T Consensus 277 ~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~n 355 (460)
T KOG0285|consen 277 TNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQN 355 (460)
T ss_pred CCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhc
Confidence 99999999999888999999999999999999999999999999999999999999999999884 99999999999999
Q ss_pred ecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccc
Q 005277 585 LMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEK 664 (704)
Q Consensus 585 ~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~ 664 (704)
+.+|...|.+++. ..| .++++|+..|.+.+||..++.........
T Consensus 356 lsgh~~iintl~~----------------------------------nsD-~v~~~G~dng~~~fwdwksg~nyQ~~~t~ 400 (460)
T KOG0285|consen 356 LSGHNAIINTLSV----------------------------------NSD-GVLVSGGDNGSIMFWDWKSGHNYQRGQTI 400 (460)
T ss_pred cccccceeeeeee----------------------------------ccC-ceEEEcCCceEEEEEecCcCccccccccc
Confidence 9999999999986 444 48999999999999999998654332111
Q ss_pred cCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 665 SGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 665 ~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
.. ...+ .....|++.+|...|..|++|..|+|
T Consensus 401 vq------pGSl-~sEagI~as~fDktg~rlit~eadKt 432 (460)
T KOG0285|consen 401 VQ------PGSL-ESEAGIFASCFDKTGSRLITGEADKT 432 (460)
T ss_pred cc------CCcc-ccccceeEEeecccCceEEeccCCcc
Confidence 10 1111 13457999999999999999998875
No 16
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=5.1e-34 Score=292.68 Aligned_cols=281 Identities=36% Similarity=0.664 Sum_probs=255.2
Q ss_pred EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (704)
Q Consensus 346 ~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (704)
++.+|.+.|+|++|+|++++|++|+.||.|++|++... .....+.+|...+.
T Consensus 4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~----------------------------~~~~~~~~~~~~i~ 55 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG----------------------------ELLRTLKGHTGPVR 55 (289)
T ss_pred HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCC----------------------------CcEEEEecCCccee
Confidence 35688999999999999999999999999999998752 23455667889999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCC
Q 005277 426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL 505 (704)
Q Consensus 426 ~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~ 505 (704)
.+.|+|+++++++++.||.|++|++..++.+..+..|...|.++.|+|++.++++++.+|.+.+||+++.+....+..|.
T Consensus 56 ~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 135 (289)
T cd00200 56 DVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHT 135 (289)
T ss_pred EEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCC
Confidence 99999999999999999999999999888888899999999999999999999998889999999999888888888899
Q ss_pred CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeee
Q 005277 506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL 585 (704)
Q Consensus 506 ~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~ 585 (704)
..+.+++|+|++.++++++.++.|++||+++++.+..+..|...+.+++|+|+++.+++++.||.|++||+++++.+..+
T Consensus 136 ~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~ 215 (289)
T cd00200 136 DWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL 215 (289)
T ss_pred CcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecch
Confidence 99999999999999999988999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccccccccc
Q 005277 586 MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKS 665 (704)
Q Consensus 586 ~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~ 665 (704)
..|...+.++.| ++++.++++++.||.|++|++.++..
T Consensus 216 ~~~~~~i~~~~~----------------------------------~~~~~~~~~~~~~~~i~i~~~~~~~~-------- 253 (289)
T cd00200 216 RGHENGVNSVAF----------------------------------SPDGYLLASGSEDGTIRVWDLRTGEC-------- 253 (289)
T ss_pred hhcCCceEEEEE----------------------------------cCCCcEEEEEcCCCcEEEEEcCCcee--------
Confidence 889999999999 88888999998899999999987543
Q ss_pred CccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 666 GTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 666 ~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
+..+..+..+|.++.|++++.+|++++.||+
T Consensus 254 -------~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 284 (289)
T cd00200 254 -------VQTLSGHTNSVTSLAWSPDGKRLASGSADGT 284 (289)
T ss_pred -------EEEccccCCcEEEEEECCCCCEEEEecCCCe
Confidence 3445577789999999999999999999874
No 17
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=8e-35 Score=293.40 Aligned_cols=298 Identities=25% Similarity=0.418 Sum_probs=252.4
Q ss_pred EEeeCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccC----C
Q 005277 346 TFINTHNGLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG----H 420 (704)
Q Consensus 346 ~~~~~~~~V~~~~fs~dg~-~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----h 420 (704)
...+|...|.+++|+|-.. ++|+|+.|...++|++.......... ...+....+.+ .
T Consensus 173 kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q------------------~~lrh~~~~~~~s~~~ 234 (524)
T KOG0273|consen 173 KVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQ------------------LVLRHCIREGGKSVPS 234 (524)
T ss_pred eeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchh------------------hhhhhhhhhhcccCCc
Confidence 4556999999999999765 99999999999999987411000000 00001111111 3
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEE
Q 005277 421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI 500 (704)
Q Consensus 421 ~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~ 500 (704)
+..|++++|+.+|..|++|+.||.+++|+.. +..+.++..|.+||.++.|+..|.|+++++.||++.+||.-++...+.
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~ 313 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQ 313 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEe
Confidence 4679999999999999999999999999987 778888999999999999999999999999999999999999999999
Q ss_pred eccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCe
Q 005277 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR 580 (704)
Q Consensus 501 ~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~ 580 (704)
+.-|..+-..|.|-. ...+++.+.|+.|+++-+....++.++.+|.+.|.++.|.|.|.+|++++.|++++||......
T Consensus 314 f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~ 392 (524)
T KOG0273|consen 314 FEFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN 392 (524)
T ss_pred eeeccCCccceEEec-CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCc
Confidence 998988877888854 4678999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccc
Q 005277 581 CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLK 660 (704)
Q Consensus 581 ~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~ 660 (704)
....+.+|...|+.+.|.+.-..... ...+..+++++.|++|++||+..+.+
T Consensus 393 ~~~~l~~Hskei~t~~wsp~g~v~~n-------------------------~~~~~~l~sas~dstV~lwdv~~gv~--- 444 (524)
T KOG0273|consen 393 SVHDLQAHSKEIYTIKWSPTGPVTSN-------------------------PNMNLMLASASFDSTVKLWDVESGVP--- 444 (524)
T ss_pred chhhhhhhccceeeEeecCCCCccCC-------------------------CcCCceEEEeecCCeEEEEEccCCce---
Confidence 99999999999999999332111110 33567899999999999999998754
Q ss_pred cccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 661 TEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 661 ~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
+.++..|..||++|+|+|+|.+||+|+.||.
T Consensus 445 ------------i~~f~kH~~pVysvafS~~g~ylAsGs~dg~ 475 (524)
T KOG0273|consen 445 ------------IHTLMKHQEPVYSVAFSPNGRYLASGSLDGC 475 (524)
T ss_pred ------------eEeeccCCCceEEEEecCCCcEEEecCCCCe
Confidence 6678899999999999999999999999984
No 18
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.7e-34 Score=315.71 Aligned_cols=284 Identities=30% Similarity=0.564 Sum_probs=250.3
Q ss_pred EEeeC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCe
Q 005277 346 TFINT-HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (704)
Q Consensus 346 ~~~~~-~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 424 (704)
++..+ ...|.|+.|+++|+.+++++.++.+++|++..... .....+.+|...|
T Consensus 153 ~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~--------------------------~~~~~l~~h~~~v 206 (456)
T KOG0266|consen 153 TLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS--------------------------NLLRELSGHTRGV 206 (456)
T ss_pred eecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc--------------------------hhhccccccccce
Confidence 34444 67899999999999999999999999999854210 1334457899999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeC-CCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc
Q 005277 425 YSASFSPLGDFILSSSADTTIRLWST-KLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG 503 (704)
Q Consensus 425 ~~l~~sp~~~~l~s~s~Dg~I~lwd~-~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~ 503 (704)
++++|+|+++++++++.|++|++||+ ..+.++.++++|...|++++|+|+|+.+++|+.|++|++||++++++++.+.+
T Consensus 207 ~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~ 286 (456)
T KOG0266|consen 207 SDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKG 286 (456)
T ss_pred eeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeec
Confidence 99999999999999999999999999 55688999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCc--EEEEeecCCCC--EEEEEEecCCCEEEEEeCCCeEEEEeCCCC
Q 005277 504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE--CVRIFIGHRSM--ILSLAMSPDGRYMASGDEDGTIMMWDLASG 579 (704)
Q Consensus 504 ~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~--~~~~~~~h~~~--i~~l~~spdg~~l~sg~~dg~I~iwdl~~~ 579 (704)
|.+.|.+++|++++++|++++.|+.|++||+.++. ++..+.++... +++++|+|+|.++++++.|+.+++||+..+
T Consensus 287 hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 287 HSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG 366 (456)
T ss_pred cCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC
Confidence 99999999999999999999999999999999999 66777777665 999999999999999999999999999999
Q ss_pred eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccc
Q 005277 580 RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVL 659 (704)
Q Consensus 580 ~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~ 659 (704)
..+..+.+|...+.++.- .+.++.+.++++|+.|+.|++|++.++..
T Consensus 367 ~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~i~sg~~d~~v~~~~~~s~~~-- 413 (456)
T KOG0266|consen 367 KSVGTYTGHSNLVRCIFS-------------------------------PTLSTGGKLIYSGSEDGSVYVWDSSSGGI-- 413 (456)
T ss_pred cceeeecccCCcceeEec-------------------------------ccccCCCCeEEEEeCCceEEEEeCCccch--
Confidence 999999999875433211 11178899999999999999999998543
Q ss_pred ccccccCccccccccccCCC-CcCeEEEEEccCCcEEEEeecC
Q 005277 660 KTEEKSGTNRLRSLKTLPTK-STPVYSLQFSRRNLLFAAGALS 701 (704)
Q Consensus 660 ~~~~~~~~~~~~~l~~~~~~-~~~V~~l~fs~~g~~La~gs~d 701 (704)
+..+..| ...|..+.|++...++++++.+
T Consensus 414 -------------~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~ 443 (456)
T KOG0266|consen 414 -------------LQRLEGHSKAAVSDLSSHPTENLIASSSFE 443 (456)
T ss_pred -------------hhhhcCCCCCceeccccCCCcCeeeecCcC
Confidence 4566677 8889999999999999999853
No 19
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5e-34 Score=266.17 Aligned_cols=284 Identities=20% Similarity=0.392 Sum_probs=243.4
Q ss_pred hccCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccC
Q 005277 327 DLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG 406 (704)
Q Consensus 327 ~~~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (704)
.+...+++|.+. ..+|..++....+.|+.+.+.||++.||+|+ ...||+||+++..
T Consensus 17 ~YDhTIRfWqa~-tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~n---------------------- 72 (311)
T KOG0315|consen 17 GYDHTIRFWQAL-TGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNN---------------------- 72 (311)
T ss_pred cCcceeeeeehh-cCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCC----------------------
Confidence 345678888754 4567777776677899999999999999986 6679999998622
Q ss_pred CCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCe
Q 005277 407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT 486 (704)
Q Consensus 407 ~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~ 486 (704)
...+..+.+|+..|.++.|..+|+++++||+||+++|||++...+.+.|+ |..+|+++..+|+...|++|..+|.
T Consensus 73 ----p~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~ 147 (311)
T KOG0315|consen 73 ----PNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGN 147 (311)
T ss_pred ----CCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCc
Confidence 23567788999999999999999999999999999999999876666665 7799999999999999999999999
Q ss_pred EEEEECCCCceeEEec-cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC------cEEEEeecCCCCEEEEEEecCC
Q 005277 487 ARIWSMDRIQPLRIMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG------ECVRIFIGHRSMILSLAMSPDG 559 (704)
Q Consensus 487 i~lwd~~~~~~~~~~~-~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~------~~~~~~~~h~~~i~~l~~spdg 559 (704)
|++||+........+. .....|.++..+|+|.+++.+...|.+++|++-++ .++..++.|.+.+..+.+|||+
T Consensus 148 irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~ 227 (311)
T KOG0315|consen 148 IRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDV 227 (311)
T ss_pred EEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCC
Confidence 9999998876555443 34568999999999999999999999999999764 3566788999999999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCC-eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEE
Q 005277 560 RYMASGDEDGTIMMWDLASG-RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLL 638 (704)
Q Consensus 560 ~~l~sg~~dg~I~iwdl~~~-~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l 638 (704)
++|++++.|.+++||+..+. +....+.+|...++...| |.||.+|
T Consensus 228 k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~F----------------------------------S~dg~Yl 273 (311)
T KOG0315|consen 228 KYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAF----------------------------------SADGEYL 273 (311)
T ss_pred cEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeee----------------------------------ccCccEE
Confidence 99999999999999999887 666788999999999999 9999999
Q ss_pred EEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEE
Q 005277 639 ASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQF 688 (704)
Q Consensus 639 asgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~f 688 (704)
+||+.|+.+++|++..++. +..+.+|..+..|++.
T Consensus 274 vTassd~~~rlW~~~~~k~---------------v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 274 VTASSDHTARLWDLSAGKE---------------VRQYQGHHKAAVCVAL 308 (311)
T ss_pred EecCCCCceeecccccCce---------------eeecCCcccccEEEEe
Confidence 9999999999999999865 4456666666555543
No 20
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=4.8e-36 Score=291.01 Aligned_cols=271 Identities=28% Similarity=0.568 Sum_probs=236.4
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEE
Q 005277 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (704)
Q Consensus 350 ~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 429 (704)
...+|.|+.+. ...+++|..|.+|+|||.+. ......+.||+|.|.|+.|
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~----------------------------~~c~~~L~GHtGSVLCLqy 245 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNS----------------------------LECLKILTGHTGSVLCLQY 245 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEecccc----------------------------HHHHHhhhcCCCcEEeeec
Confidence 45689999994 45799999999999999875 3466778999999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCce---eEEeccCCC
Q 005277 430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP---LRIMAGHLS 506 (704)
Q Consensus 430 sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~---~~~~~~~~~ 506 (704)
. .+.+++||.|.+|++||+++++++.++-+|...|..+.|+ +.++++++.|.++.+||+..... .+.+.||..
T Consensus 246 d--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrA 321 (499)
T KOG0281|consen 246 D--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA 321 (499)
T ss_pred c--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhh
Confidence 7 6789999999999999999999999999999999999996 66999999999999999987653 356679999
Q ss_pred CeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeec
Q 005277 507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM 586 (704)
Q Consensus 507 ~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~ 586 (704)
.|+.+.|+ .+|+++++.|.+|++|++.++.+++++.+|...|-|+.+ .|+++++|+.|.+|++||+..|.+++.+.
T Consensus 322 aVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLe 397 (499)
T KOG0281|consen 322 AVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLE 397 (499)
T ss_pred heeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHh
Confidence 99999985 459999999999999999999999999999999999998 59999999999999999999999999999
Q ss_pred CCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccC
Q 005277 587 GHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSG 666 (704)
Q Consensus 587 ~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~ 666 (704)
||..-|.++.| +...+++|+.||+|+|||+..+.... .
T Consensus 398 GHEeLvRciRF------------------------------------d~krIVSGaYDGkikvWdl~aaldpr------a 435 (499)
T KOG0281|consen 398 GHEELVRCIRF------------------------------------DNKRIVSGAYDGKIKVWDLQAALDPR------A 435 (499)
T ss_pred chHHhhhheee------------------------------------cCceeeeccccceEEEEecccccCCc------c
Confidence 99999999988 67899999999999999998875431 1
Q ss_pred ccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277 667 TNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 702 (704)
Q Consensus 667 ~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg 702 (704)
....-++.++..|.+.|..++|.. ..+++++.|.
T Consensus 436 ~~~~~Cl~~lv~hsgRVFrLQFD~--fqIvsssHdd 469 (499)
T KOG0281|consen 436 PASTLCLRTLVEHSGRVFRLQFDE--FQIISSSHDD 469 (499)
T ss_pred cccchHHHhhhhccceeEEEeecc--eEEEeccCCC
Confidence 122245677888999999999943 3455555554
No 21
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.3e-34 Score=270.45 Aligned_cols=247 Identities=26% Similarity=0.439 Sum_probs=218.1
Q ss_pred EEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCcc
Q 005277 343 SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG 422 (704)
Q Consensus 343 ~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 422 (704)
....+.+|...|..++.++||++.++|+.|+.+++||+.+ ....+.+.||..
T Consensus 55 ~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~----------------------------g~~t~~f~GH~~ 106 (315)
T KOG0279|consen 55 PVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLAT----------------------------GESTRRFVGHTK 106 (315)
T ss_pred eeeeeeccceEecceEEccCCceEEeccccceEEEEEecC----------------------------CcEEEEEEecCC
Confidence 3456788999999999999999999999999999999986 356788999999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecC--CcCeeEEEEcCC--CCEEEEEeCCCeEEEEECCCCcee
Q 005277 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH--NYPVWDVQFNPQ--GHYFASSSHDRTARIWSMDRIQPL 498 (704)
Q Consensus 423 ~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h--~~~V~~v~~sp~--~~~l~sgs~dg~i~lwd~~~~~~~ 498 (704)
.|.+++|++|++.+++||.|.+|++|++- +.+..++..+ ...|.|+.|+|+ ..++++++.|+++++||+++.+..
T Consensus 107 dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~ 185 (315)
T KOG0279|consen 107 DVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLR 185 (315)
T ss_pred ceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchh
Confidence 99999999999999999999999999998 4455555433 788999999997 789999999999999999999999
Q ss_pred EEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 005277 499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578 (704)
Q Consensus 499 ~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~ 578 (704)
..+.+|.+.++.++++|||...++|+.||.+.+||++.++.+..+ +|...|.+++|+|+..+|+.+... .|+|||+.+
T Consensus 186 ~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl-~a~~~v~sl~fspnrywL~~at~~-sIkIwdl~~ 263 (315)
T KOG0279|consen 186 TTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL-EAFDIVNSLCFSPNRYWLCAATAT-SIKIWDLES 263 (315)
T ss_pred hccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec-cCCCeEeeEEecCCceeEeeccCC-ceEEEeccc
Confidence 999999999999999999999999999999999999999998776 688999999999998887776554 599999999
Q ss_pred CeeeeeecCC---------CceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEE
Q 005277 579 GRCVTPLMGH---------TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKL 649 (704)
Q Consensus 579 ~~~~~~~~~h---------~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~i 649 (704)
+.++..+... .....+++| +++|..|++|..|+.|++
T Consensus 264 ~~~v~~l~~d~~g~s~~~~~~~clslaw----------------------------------s~dG~tLf~g~td~~irv 309 (315)
T KOG0279|consen 264 KAVVEELKLDGIGPSSKAGDPICLSLAW----------------------------------SADGQTLFAGYTDNVIRV 309 (315)
T ss_pred hhhhhhccccccccccccCCcEEEEEEE----------------------------------cCCCcEEEeeecCCcEEE
Confidence 9888776421 223455666 999999999999999999
Q ss_pred EeCCC
Q 005277 650 WDVTT 654 (704)
Q Consensus 650 Wd~~~ 654 (704)
|.+..
T Consensus 310 ~qv~~ 314 (315)
T KOG0279|consen 310 WQVAK 314 (315)
T ss_pred EEeec
Confidence 98753
No 22
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=6.9e-35 Score=311.80 Aligned_cols=235 Identities=33% Similarity=0.582 Sum_probs=221.2
Q ss_pred CccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-------------------------------eeEEeecCCcCeeE
Q 005277 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA-------------------------------NLVCYKGHNYPVWD 468 (704)
Q Consensus 420 h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~-------------------------------~~~~~~~h~~~V~~ 468 (704)
....++|..|++|+..||.|..|..|++|.+...+ ....+.+|.+||..
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg 456 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYG 456 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceee
Confidence 34679999999999999999999999999987311 12446789999999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCC
Q 005277 469 VQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS 548 (704)
Q Consensus 469 v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~ 548 (704)
+.|+|+.++|++|+.|+++|+|++++...+..+.||..+|+++.|+|.|-|+|+++.|++.++|......+.+.|.+|.+
T Consensus 457 ~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghls 536 (707)
T KOG0263|consen 457 CSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLS 536 (707)
T ss_pred eeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEee
Q 005277 549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYF 628 (704)
Q Consensus 549 ~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (704)
.|.|+.|+|+..|+++|+.|.+|++||+.+|..++.+.||.++|.+++|
T Consensus 537 DV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~------------------------------- 585 (707)
T KOG0263|consen 537 DVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAF------------------------------- 585 (707)
T ss_pred ccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEE-------------------------------
Confidence 9999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 629 GCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 629 ~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
||+|++|++|+.||.|.+||+.++. .+..+.+|.+.|++|.||++|.+||+|+.|++
T Consensus 586 ---Sp~Gr~LaSg~ed~~I~iWDl~~~~---------------~v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dns 642 (707)
T KOG0263|consen 586 ---SPCGRYLASGDEDGLIKIWDLANGS---------------LVKQLKGHTGTIYSLSFSRDGNVLASGGADNS 642 (707)
T ss_pred ---cCCCceEeecccCCcEEEEEcCCCc---------------chhhhhcccCceeEEEEecCCCEEEecCCCCe
Confidence 9999999999999999999999875 36778889999999999999999999999975
No 23
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.5e-34 Score=262.88 Aligned_cols=283 Identities=24% Similarity=0.387 Sum_probs=250.1
Q ss_pred CCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeecc
Q 005277 339 LPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ 418 (704)
Q Consensus 339 ~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (704)
+|.....++..+.+.|..+.|+-||++.++++.|.+|++|+... ...++.+.
T Consensus 5 ~ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~r----------------------------g~liktYs 56 (307)
T KOG0316|consen 5 LPTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLR----------------------------GALIKTYS 56 (307)
T ss_pred CcchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccc----------------------------cceeeeec
Confidence 45555566778999999999999999999999999999999654 45778899
Q ss_pred CCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCC--Cc
Q 005277 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR--IQ 496 (704)
Q Consensus 419 ~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~--~~ 496 (704)
+|...|..++.+.|+..+++|+.|..|.+||+.+|+.+..+++|.+.|..+.|+.+...+++|+.|.++++||.+. .+
T Consensus 57 ghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~e 136 (307)
T KOG0316|consen 57 GHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFE 136 (307)
T ss_pred CCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999975 57
Q ss_pred eeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 005277 497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576 (704)
Q Consensus 497 ~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl 576 (704)
|++++......|.++.. .+..|++|+.||++|.||++.|.....+.+ .+|+|++|++||++..+++.|+++++.|-
T Consensus 137 PiQildea~D~V~Si~v--~~heIvaGS~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk 212 (307)
T KOG0316|consen 137 PIQILDEAKDGVSSIDV--AEHEIVAGSVDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDK 212 (307)
T ss_pred ccchhhhhcCceeEEEe--cccEEEeeccCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeeccc
Confidence 89999888889999886 467899999999999999999988776655 58999999999999999999999999999
Q ss_pred CCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCc
Q 005277 577 ASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTST 656 (704)
Q Consensus 577 ~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~ 656 (704)
.+|+.+..+.+|...-+.+.. |++.....+++|++||.|.+||+....
T Consensus 213 ~tGklL~sYkGhkn~eykldc--------------------------------~l~qsdthV~sgSEDG~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 213 ETGKLLKSYKGHKNMEYKLDC--------------------------------CLNQSDTHVFSGSEDGKVYFWDLVDET 260 (307)
T ss_pred chhHHHHHhcccccceeeeee--------------------------------eecccceeEEeccCCceEEEEEeccce
Confidence 999999999999876666554 336677899999999999999998865
Q ss_pred cccccccccCccccccccccCCCCcC-eEEEEEccCCcEEEEeec
Q 005277 657 KVLKTEEKSGTNRLRSLKTLPTKSTP-VYSLQFSRRNLLFAAGAL 700 (704)
Q Consensus 657 ~~~~~~~~~~~~~~~~l~~~~~~~~~-V~~l~fs~~g~~La~gs~ 700 (704)
. +..++.+..+ |.++.++|.-..|.+++.
T Consensus 261 ~---------------~sk~~~~~~v~v~dl~~hp~~~~f~~A~~ 290 (307)
T KOG0316|consen 261 Q---------------ISKLSVVSTVIVTDLSCHPTMDDFITATG 290 (307)
T ss_pred e---------------eeeeccCCceeEEeeecccCccceeEecC
Confidence 4 5566677777 899999998766655543
No 24
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.6e-33 Score=262.42 Aligned_cols=287 Identities=23% Similarity=0.413 Sum_probs=240.3
Q ss_pred EEEEEeeCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccce-eeccCC
Q 005277 343 SFYTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSY-TLYQGH 420 (704)
Q Consensus 343 ~~~~~~~~~~~V~~~~fs~d-g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~h 420 (704)
...++.+|.+.+..++|+|- |.+||+|+.|..|+||+...... .... ..-.+|
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s-------------------------~~ck~vld~~h 60 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS-------------------------WTCKTVLDDGH 60 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc-------------------------EEEEEeccccc
Confidence 34567788999999999998 99999999999999999874110 1111 223479
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC--CceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCC---C
Q 005277 421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKL--NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR---I 495 (704)
Q Consensus 421 ~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~--~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~---~ 495 (704)
+..|.+++|+|.|++|++||.|.++.||.-.. .+++..+.||...|.+++|+++|++||+|+.|+.|-||.++. .
T Consensus 61 krsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEf 140 (312)
T KOG0645|consen 61 KRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEF 140 (312)
T ss_pred hheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcE
Confidence 99999999999999999999999999998764 467889999999999999999999999999999999999974 3
Q ss_pred ceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC---CCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEE
Q 005277 496 QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS---SGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM 572 (704)
Q Consensus 496 ~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~---~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~ 572 (704)
.+...+.+|..+|..+.|||...+|++++.|.+|++|+-. .-.++.++.+|.+.|-+++|+|.|..|++++.|++++
T Consensus 141 ec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~ 220 (312)
T KOG0645|consen 141 ECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVS 220 (312)
T ss_pred EEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceE
Confidence 5678889999999999999999999999999999999876 3368899999999999999999999999999999999
Q ss_pred EEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeC
Q 005277 573 MWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDV 652 (704)
Q Consensus 573 iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~ 652 (704)
||-..+.- -..|...++.+.| . ...|++|+.|+.|+++.-
T Consensus 221 Iw~~~~~~----~~~~sr~~Y~v~W----------------------------------~--~~~IaS~ggD~~i~lf~~ 260 (312)
T KOG0645|consen 221 IWRLYTDL----SGMHSRALYDVPW----------------------------------D--NGVIASGGGDDAIRLFKE 260 (312)
T ss_pred eeeeccCc----chhcccceEeeee----------------------------------c--ccceEeccCCCEEEEEEe
Confidence 99865321 1237789999999 4 558999999999999987
Q ss_pred CCCccccccccccCcccccccc-ccCCCCcCeEEEEEccC-CcEEEEeecCCC
Q 005277 653 TTSTKVLKTEEKSGTNRLRSLK-TLPTKSTPVYSLQFSRR-NLLFAAGALSKT 703 (704)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~V~~l~fs~~-g~~La~gs~dgt 703 (704)
...... ..+..+. .-..|...|++|+|+|. ..+|++|+.||+
T Consensus 261 s~~~d~---------p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~ 304 (312)
T KOG0645|consen 261 SDSPDE---------PSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGI 304 (312)
T ss_pred cCCCCC---------chHHHHHhhhcccccccceEEEcCCCCCceeecCCCce
Confidence 643111 1122222 44568889999999994 678999999985
No 25
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.3e-33 Score=295.48 Aligned_cols=301 Identities=26% Similarity=0.448 Sum_probs=254.4
Q ss_pred CCCeEEEEEe-eCCCCEEEEEEcCCCCEEEEEeCC-CcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceee
Q 005277 339 LPSVSFYTFI-NTHNGLNCASISQDGSLVAGGFSD-SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL 416 (704)
Q Consensus 339 ~p~~~~~~~~-~~~~~V~~~~fs~dg~~lasg~~d-g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (704)
+|...+...+ -....|..++|+..|.+||.|+.. |.+-||++.. ...+-.
T Consensus 294 lP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqs----------------------------EsYVlK 345 (893)
T KOG0291|consen 294 LPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQS----------------------------ESYVLK 345 (893)
T ss_pred cCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeec----------------------------cceeee
Confidence 4555444333 345789999999999999999875 8999999976 234456
Q ss_pred ccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 005277 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ 496 (704)
Q Consensus 417 ~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~ 496 (704)
.+||...+.+++++|||+++++|+.||.|+|||..++-|..+|..|+..|+.++|+..|+.++++|-||+|+.||+.+.+
T Consensus 346 QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYr 425 (893)
T KOG0291|consen 346 QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYR 425 (893)
T ss_pred ccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEeccC-CCCeeEEEEcCCCCEEEEEECCC-cEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEE
Q 005277 497 PLRIMAGH-LSDVDCVRWHINCNYIATGSSDK-TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMW 574 (704)
Q Consensus 497 ~~~~~~~~-~~~V~~v~~~p~~~~l~tgs~dg-~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iw 574 (704)
..+++... .....|++..|.|..+++|+.|. .|.+|++++|+.+-.+.||.++|.+++|+|+|..|++|+.|.+|++|
T Consensus 426 NfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW 505 (893)
T KOG0291|consen 426 NFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIW 505 (893)
T ss_pred eeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEE
Confidence 88888743 34578999999999999998875 59999999999999999999999999999999999999999999999
Q ss_pred eCCCCe-eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCC
Q 005277 575 DLASGR-CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVT 653 (704)
Q Consensus 575 dl~~~~-~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~ 653 (704)
|+-... .+.++ .+...+..++| +|+|..|++++.||.|.+||+.
T Consensus 506 ~if~s~~~vEtl-~i~sdvl~vsf----------------------------------rPdG~elaVaTldgqItf~d~~ 550 (893)
T KOG0291|consen 506 DIFSSSGTVETL-EIRSDVLAVSF----------------------------------RPDGKELAVATLDGQITFFDIK 550 (893)
T ss_pred EeeccCceeeeE-eeccceeEEEE----------------------------------cCCCCeEEEEEecceEEEEEhh
Confidence 986543 33333 36677888888 9999999999999999999999
Q ss_pred CCcccccccccc----Cc-cccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277 654 TSTKVLKTEEKS----GT-NRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 702 (704)
Q Consensus 654 ~~~~~~~~~~~~----~~-~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg 702 (704)
.+..+..+..+. +. ........-.....+.+.+++|+||.++.+|+..+
T Consensus 551 ~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn 604 (893)
T KOG0291|consen 551 EAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESN 604 (893)
T ss_pred hceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcc
Confidence 887775554421 11 11112233344567899999999999999998765
No 26
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.9e-33 Score=261.09 Aligned_cols=263 Identities=22% Similarity=0.368 Sum_probs=231.7
Q ss_pred CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCC
Q 005277 363 GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSAD 442 (704)
Q Consensus 363 g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D 442 (704)
.-+||+++.|.+||+|...+ +.+.+.++...+.|+.+...|+++.|++++.
T Consensus 10 ~viLvsA~YDhTIRfWqa~t----------------------------G~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~- 60 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALT----------------------------GICSRTIQHPDSQVNRLEITPDKKDLAAAGN- 60 (311)
T ss_pred ceEEEeccCcceeeeeehhc----------------------------CeEEEEEecCccceeeEEEcCCcchhhhccC-
Confidence 35899999999999999876 4566666666788999999999999998886
Q ss_pred CeEEEEeCCCCc--eeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEE
Q 005277 443 TTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI 520 (704)
Q Consensus 443 g~I~lwd~~~~~--~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l 520 (704)
-.||+||++++. ++.+|.+|+..|+.+.|..+|+++++||.||+++|||++.....+.+. |.++|+++..||+...|
T Consensus 61 qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteL 139 (311)
T KOG0315|consen 61 QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTEL 139 (311)
T ss_pred CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceE
Confidence 479999999875 588999999999999999999999999999999999999977777776 77999999999999999
Q ss_pred EEEECCCcEEEEeCCCCcEEEEeec-CCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCC------eeeeeecCCCceee
Q 005277 521 ATGSSDKTVRLWDVSSGECVRIFIG-HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG------RCVTPLMGHTSCVW 593 (704)
Q Consensus 521 ~tgs~dg~I~iwd~~~~~~~~~~~~-h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~------~~~~~~~~h~~~V~ 593 (704)
++|..+|.|++||+....+.+.+.. ....|.++...|||.+|+.+...|..++|++-+. .++..++.|.+.+.
T Consensus 140 is~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il 219 (311)
T KOG0315|consen 140 ISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHIL 219 (311)
T ss_pred EeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEE
Confidence 9999999999999998877666543 3468999999999999999999999999998764 45667788999998
Q ss_pred eeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccc
Q 005277 594 TLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSL 673 (704)
Q Consensus 594 sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l 673 (704)
.+.+ ||++++||++|.|.+++||+.++-- ..-
T Consensus 220 ~C~l----------------------------------SPd~k~lat~ssdktv~iwn~~~~~--------------kle 251 (311)
T KOG0315|consen 220 RCLL----------------------------------SPDVKYLATCSSDKTVKIWNTDDFF--------------KLE 251 (311)
T ss_pred EEEE----------------------------------CCCCcEEEeecCCceEEEEecCCce--------------eeE
Confidence 8888 9999999999999999999998751 223
Q ss_pred cccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 674 KTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 674 ~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
..+.+|...|...+||.||.+|++|+.|++
T Consensus 252 ~~l~gh~rWvWdc~FS~dg~YlvTassd~~ 281 (311)
T KOG0315|consen 252 LVLTGHQRWVWDCAFSADGEYLVTASSDHT 281 (311)
T ss_pred EEeecCCceEEeeeeccCccEEEecCCCCc
Confidence 456788899999999999999999999964
No 27
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-33 Score=280.78 Aligned_cols=294 Identities=23% Similarity=0.381 Sum_probs=250.9
Q ss_pred CCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCcccee
Q 005277 336 SAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYT 415 (704)
Q Consensus 336 ~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (704)
...+|+....++..|.+.|.-+.||++|++||+|+.|.+..||.+... ...+...
T Consensus 209 ~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d-------------------------~~~kl~~ 263 (519)
T KOG0293|consen 209 RLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYD-------------------------VHFKLKK 263 (519)
T ss_pred cccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecC-------------------------cceeeee
Confidence 345677777788999999999999999999999999999999998641 2245678
Q ss_pred eccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee-cCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 005277 416 LYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK-GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR 494 (704)
Q Consensus 416 ~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~-~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~ 494 (704)
++.||..+|.-+.||||.++|++|+.|..+++||+.++.....|. +|...+.+++|.|||..|++|+.|+++..||++.
T Consensus 264 tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg 343 (519)
T KOG0293|consen 264 TLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG 343 (519)
T ss_pred eeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc
Confidence 899999999999999999999999999999999999999988876 3467899999999999999999999999999986
Q ss_pred CceeEEecc-CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEE
Q 005277 495 IQPLRIMAG-HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMM 573 (704)
Q Consensus 495 ~~~~~~~~~-~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~i 573 (704)
.. .....+ ....|.+++..+||+++++.+.|..|++++..+....... ....+|++++.|.||+++.+.-.+..|++
T Consensus 344 n~-~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~li-se~~~its~~iS~d~k~~LvnL~~qei~L 421 (519)
T KOG0293|consen 344 NI-LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLI-SEEQPITSFSISKDGKLALVNLQDQEIHL 421 (519)
T ss_pred ch-hhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccc-cccCceeEEEEcCCCcEEEEEcccCeeEE
Confidence 43 333333 2356899999999999999999999999999876665544 34568999999999999999999999999
Q ss_pred EeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeeccc-CCCCCEEEEEeCCCcEEEEeC
Q 005277 574 WDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCA-SCEGSLLASGSADCTVKLWDV 652 (704)
Q Consensus 574 wdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~g~~lasgs~Dg~V~iWd~ 652 (704)
||+...+.+..+.||...-+-+.- |+ ..+..++++||+|+.|+||+.
T Consensus 422 WDl~e~~lv~kY~Ghkq~~fiIrS--------------------------------CFgg~~~~fiaSGSED~kvyIWhr 469 (519)
T KOG0293|consen 422 WDLEENKLVRKYFGHKQGHFIIRS--------------------------------CFGGGNDKFIASGSEDSKVYIWHR 469 (519)
T ss_pred eecchhhHHHHhhcccccceEEEe--------------------------------ccCCCCcceEEecCCCceEEEEEc
Confidence 999999999999999854333322 11 445689999999999999999
Q ss_pred CCCccccccccccCccccccccccCCCCcCeEEEEEccCC-cEEEEeecCCC
Q 005277 653 TTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRN-LLFAAGALSKT 703 (704)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g-~~La~gs~dgt 703 (704)
.++. ++..+.+|...|.+|+|+|.+ .+||+|+.|||
T Consensus 470 ~sgk---------------ll~~LsGHs~~vNcVswNP~~p~m~ASasDDgt 506 (519)
T KOG0293|consen 470 ISGK---------------LLAVLSGHSKTVNCVSWNPADPEMFASASDDGT 506 (519)
T ss_pred cCCc---------------eeEeecCCcceeeEEecCCCCHHHhhccCCCCe
Confidence 8875 478899999999999999976 57899999987
No 28
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.2e-34 Score=287.35 Aligned_cols=246 Identities=25% Similarity=0.490 Sum_probs=226.4
Q ss_pred EeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCc-cCeE
Q 005277 347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS-GPVY 425 (704)
Q Consensus 347 ~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~ 425 (704)
...|...|+++.||++|.++++|..+|.|++|+.+- ..+....+|. ..|.
T Consensus 134 lQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-----------------------------nnVk~~~ahh~eaIR 184 (464)
T KOG0284|consen 134 LQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-----------------------------NNVKIIQAHHAEAIR 184 (464)
T ss_pred hhhhcccceeEEEccCCCEEEEcCCCceEEecccch-----------------------------hhhHHhhHhhhhhhh
Confidence 357889999999999999999999999999998653 3344445554 9999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCC
Q 005277 426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL 505 (704)
Q Consensus 426 ~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~ 505 (704)
+++|+|+...+++||.||+|+|||....+.-..+.+|...|.+++|+|....+++||.|..|++||.++++++.++.+|.
T Consensus 185 dlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HK 264 (464)
T KOG0284|consen 185 DLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHK 264 (464)
T ss_pred eeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhcc
Confidence 99999999999999999999999999998888899999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEec-CCCEEEEEeCCCeEEEEeCCCCeeeee
Q 005277 506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVTP 584 (704)
Q Consensus 506 ~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~sp-dg~~l~sg~~dg~I~iwdl~~~~~~~~ 584 (704)
..|..+.|+|++++|+++|.|..++++|+++.+.++.+.+|...++++.|+| ...+|.+|+.||.|..|.+...+++..
T Consensus 265 ntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~ 344 (464)
T KOG0284|consen 265 NTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGE 344 (464)
T ss_pred ceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccC
Confidence 9999999999999999999999999999999999999999999999999999 567888999999999999986666666
Q ss_pred e-cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCC
Q 005277 585 L-MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTS 655 (704)
Q Consensus 585 ~-~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~ 655 (704)
+ .+|...|++++| +|-|.+|++|+.|.++++|.-...
T Consensus 345 i~~AHd~~iwsl~~----------------------------------hPlGhil~tgsnd~t~rfw~r~rp 382 (464)
T KOG0284|consen 345 IPPAHDGEIWSLAY----------------------------------HPLGHILATGSNDRTVRFWTRNRP 382 (464)
T ss_pred CCcccccceeeeec----------------------------------cccceeEeecCCCcceeeeccCCC
Confidence 6 579999999999 999999999999999999986543
No 29
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=4.3e-32 Score=319.86 Aligned_cols=298 Identities=17% Similarity=0.305 Sum_probs=241.9
Q ss_pred EeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEE
Q 005277 347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (704)
Q Consensus 347 ~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 426 (704)
+.+|.+.|++++|+|+|++||+|+.||.|+||++........ ........+. +...|.+
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~--------------------~~~~~~~~~~-~~~~v~~ 537 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGR--------------------DIHYPVVELA-SRSKLSG 537 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccc--------------------ccccceEEec-ccCceee
Confidence 356888999999999999999999999999999754110000 0001112222 3468999
Q ss_pred EEEcCC-CCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeEEeccC
Q 005277 427 ASFSPL-GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPLRIMAGH 504 (704)
Q Consensus 427 l~~sp~-~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~ 504 (704)
++|+|. +.+|++++.||+|++||+.+++.+..+.+|...|++++|+| ++.+|++|+.||+|++||++++..+..+..+
T Consensus 538 l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~ 617 (793)
T PLN00181 538 ICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK 617 (793)
T ss_pred EEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC
Confidence 999874 67899999999999999999999999999999999999997 7899999999999999999998888887754
Q ss_pred CCCeeEEEEc-CCCCEEEEEECCCcEEEEeCCCCc-EEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCC----
Q 005277 505 LSDVDCVRWH-INCNYIATGSSDKTVRLWDVSSGE-CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS---- 578 (704)
Q Consensus 505 ~~~V~~v~~~-p~~~~l~tgs~dg~I~iwd~~~~~-~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~---- 578 (704)
..|.++.|+ +++.+|++|+.||.|++||+++++ .+..+.+|...|.++.|. ++.+|++++.|+.|++||++.
T Consensus 618 -~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~ 695 (793)
T PLN00181 618 -ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISG 695 (793)
T ss_pred -CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccc
Confidence 689999995 579999999999999999998765 567788999999999997 788999999999999999974
Q ss_pred --CeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCc
Q 005277 579 --GRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTST 656 (704)
Q Consensus 579 --~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~ 656 (704)
+.++..+.+|...+..+.| ++++.+|++|+.||.|++|+.....
T Consensus 696 ~~~~~l~~~~gh~~~i~~v~~----------------------------------s~~~~~lasgs~D~~v~iw~~~~~~ 741 (793)
T PLN00181 696 INETPLHSFMGHTNVKNFVGL----------------------------------SVSDGYIATGSETNEVFVYHKAFPM 741 (793)
T ss_pred cCCcceEEEcCCCCCeeEEEE----------------------------------cCCCCEEEEEeCCCEEEEEECCCCC
Confidence 3567888999999999988 9999999999999999999987654
Q ss_pred cccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 657 KVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 657 ~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
.......... .... -.....+...|.+++|+|++..|++|+.+|+
T Consensus 742 ~~~s~~~~~~-~~~~-~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~ 786 (793)
T PLN00181 742 PVLSYKFKTI-DPVS-GLEVDDASQFISSVCWRGQSSTLVAANSTGN 786 (793)
T ss_pred ceEEEecccC-Cccc-ccccCCCCcEEEEEEEcCCCCeEEEecCCCc
Confidence 3322111000 0000 0112345667999999999999999999985
No 30
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-33 Score=275.93 Aligned_cols=246 Identities=33% Similarity=0.578 Sum_probs=232.4
Q ss_pred EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (704)
Q Consensus 346 ~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (704)
.+.+|.++|..++|+..|++||+++.|-.+++||..+. ..+++.+.+|...|.
T Consensus 145 ~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~---------------------------~~c~ks~~gh~h~vS 197 (406)
T KOG0295|consen 145 SLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF---------------------------FRCIKSLIGHEHGVS 197 (406)
T ss_pred hhhccccceeEEEEecCccEEEecCCccchhheeHHHH---------------------------HHHHHHhcCccccee
Confidence 56789999999999999999999999999999998751 346677889999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCC
Q 005277 426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL 505 (704)
Q Consensus 426 ~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~ 505 (704)
++.|-|.|.+++|++.|.+|+.|++.++-++.++.+|...|..++.+.||..+++|+.|.++++|-+.+.++...+..|.
T Consensus 198 ~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hE 277 (406)
T KOG0295|consen 198 SVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHE 277 (406)
T ss_pred eEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEcCC---------------CCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCe
Q 005277 506 SDVDCVRWHIN---------------CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT 570 (704)
Q Consensus 506 ~~V~~v~~~p~---------------~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~ 570 (704)
-+|.|++|.|. +.++++++.|++|++||+.+|.++.++.+|...|..++|+|.|+||+++.+|++
T Consensus 278 h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDkt 357 (406)
T KOG0295|consen 278 HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKT 357 (406)
T ss_pred cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCc
Confidence 99999999762 258999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEE
Q 005277 571 IMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLW 650 (704)
Q Consensus 571 I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iW 650 (704)
+++||+++++++..+..|..-|++++| +.+..+++||+-|.++++|
T Consensus 358 lrvwdl~~~~cmk~~~ah~hfvt~lDf----------------------------------h~~~p~VvTGsVdqt~Kvw 403 (406)
T KOG0295|consen 358 LRVWDLKNLQCMKTLEAHEHFVTSLDF----------------------------------HKTAPYVVTGSVDQTVKVW 403 (406)
T ss_pred EEEEEeccceeeeccCCCcceeEEEec----------------------------------CCCCceEEeccccceeeee
Confidence 999999999999999999999999999 7777799999999999999
Q ss_pred eC
Q 005277 651 DV 652 (704)
Q Consensus 651 d~ 652 (704)
..
T Consensus 404 Ec 405 (406)
T KOG0295|consen 404 EC 405 (406)
T ss_pred ec
Confidence 74
No 31
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=8.8e-32 Score=274.69 Aligned_cols=344 Identities=24% Similarity=0.332 Sum_probs=253.9
Q ss_pred EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCcccccc--ccCCC---CCCCCcc-cc--cCCC---------
Q 005277 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSS--GLQGE---NDTTPRE-DI--IGPN--------- 408 (704)
Q Consensus 346 ~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~--~~~~~---~~~~~~~-~~--~~~~--------- 408 (704)
.+.+|...++-..|||.|.++|+|...|.||||+........... ...+. ....... ++ .+..
T Consensus 54 iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~ 133 (603)
T KOG0318|consen 54 IYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFL 133 (603)
T ss_pred eeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEE
Confidence 356788889999999999999999999999999987533221111 11111 0111000 00 0000
Q ss_pred -CCccceeeccCCccCeEEEEEcCCCCE-EEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCe
Q 005277 409 -GRKRSYTLYQGHSGPVYSASFSPLGDF-ILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT 486 (704)
Q Consensus 409 -~~~~~~~~~~~h~~~V~~l~~sp~~~~-l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~ 486 (704)
......-.+.||+..|+++.|-|...+ +++|+.|++|.+|+-...+...+++.|..-|.|+.|+|||..|++++.||.
T Consensus 134 ~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgk 213 (603)
T KOG0318|consen 134 WDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGK 213 (603)
T ss_pred ecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCcc
Confidence 012234457799999999999998874 889999999999998877888888999999999999999999999999999
Q ss_pred EEEEECCCCceeEEec---cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEE---------------------
Q 005277 487 ARIWSMDRIQPLRIMA---GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI--------------------- 542 (704)
Q Consensus 487 i~lwd~~~~~~~~~~~---~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~--------------------- 542 (704)
+.+||-.+++.+..+. +|.+.|.+++|+||+..+++++.|.+++|||+.+++++++
T Consensus 214 i~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~l 293 (603)
T KOG0318|consen 214 IYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHL 293 (603)
T ss_pred EEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeE
Confidence 9999999999999988 8999999999999999999999999999999987765543
Q ss_pred ----------------------eecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeee-cCCCceeeeeeeee
Q 005277 543 ----------------------FIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL-MGHTSCVWTLAYRF 599 (704)
Q Consensus 543 ----------------------~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~-~~h~~~V~sl~~~~ 599 (704)
+.||...|+++..+|++.+|++|+.||.|.-||..+|..-+.. .+|...|.++...-
T Consensus 294 ItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~ 373 (603)
T KOG0318|consen 294 ITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASE 373 (603)
T ss_pred EEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecC
Confidence 4689999999999999999999999999999999887554332 44555555444311
Q ss_pred ----eehccccccccc----------------------cccccc-ee-------------------eeeeeEEeecccCC
Q 005277 600 ----LLLVTNAYLKIS----------------------DKVSTG-FL-------------------FYSLTIIYFGCASC 633 (704)
Q Consensus 600 ----~~~~~~~~~~~~----------------------~~~~~~-~~-------------------~~~~~~~~~~~~s~ 633 (704)
+.+.-++.++.. .....+ .. ...........++|
T Consensus 374 ~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~ 453 (603)
T KOG0318|consen 374 SGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP 453 (603)
T ss_pred CCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcC
Confidence 000001111100 000000 00 00000222345599
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277 634 EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 702 (704)
Q Consensus 634 ~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg 702 (704)
+++.++.|+.||.|+||.+...... .......|..+|++++||||+.+||+|...+
T Consensus 454 ~~~~vaVGG~Dgkvhvysl~g~~l~-------------ee~~~~~h~a~iT~vaySpd~~yla~~Da~r 509 (603)
T KOG0318|consen 454 DGSEVAVGGQDGKVHVYSLSGDELK-------------EEAKLLEHRAAITDVAYSPDGAYLAAGDASR 509 (603)
T ss_pred CCCEEEEecccceEEEEEecCCccc-------------ceeeeecccCCceEEEECCCCcEEEEeccCC
Confidence 9999999999999999999876532 1234456889999999999999999997654
No 32
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.3e-33 Score=285.92 Aligned_cols=288 Identities=22% Similarity=0.378 Sum_probs=252.5
Q ss_pred CCCCeEEEEEeeCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceee
Q 005277 338 ALPSVSFYTFINTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL 416 (704)
Q Consensus 338 ~~p~~~~~~~~~~~~~V~~~~fs~-dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (704)
-+|....+++.+|..+|+++.|.| .+.+|++|+.|+.|+||++-. ...+++.
T Consensus 201 ~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~---------------------------~~~~lrt 253 (503)
T KOG0282|consen 201 YLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD---------------------------DRRCLRT 253 (503)
T ss_pred eccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEec---------------------------Ccceehh
Confidence 356667788999999999999999 799999999999999999864 2567889
Q ss_pred ccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCC-CEEEEEeCCCeEEEEECCCC
Q 005277 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRI 495 (704)
Q Consensus 417 ~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~-~~l~sgs~dg~i~lwd~~~~ 495 (704)
+.||+.+|.+++|+++|..++|+|.|+.|++||+++|+++..+.. ...+.|+.|.|++ +.|++|+.|+.|+.||++++
T Consensus 254 f~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~ 332 (503)
T KOG0282|consen 254 FKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG 332 (503)
T ss_pred hhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccch
Confidence 999999999999999999999999999999999999999999873 5678999999988 89999999999999999999
Q ss_pred ceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEee-cCCCCEEEEEEecCCCEEEEEeCCCeEEEE
Q 005277 496 QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSPDGRYMASGDEDGTIMMW 574 (704)
Q Consensus 496 ~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~i~~l~~spdg~~l~sg~~dg~I~iw 574 (704)
+.++.+..|.+.|..+.|-++|.++++.+.|+++++|+.+.+..+.... .+.....|+..+|++.++++-+.|+.|.++
T Consensus 333 kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~if 412 (503)
T KOG0282|consen 333 KVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIF 412 (503)
T ss_pred HHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEE
Confidence 9999999999999999999999999999999999999999887665443 233456789999999999999999999999
Q ss_pred eCCCC---eeeeeecCCCceee--eeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEE
Q 005277 575 DLASG---RCVTPLMGHTSCVW--TLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKL 649 (704)
Q Consensus 575 dl~~~---~~~~~~~~h~~~V~--sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~i 649 (704)
.+... ..-..+.+|...-+ .+.| ||||.+|++|+.||.+.+
T Consensus 413 s~~~~~r~nkkK~feGh~vaGys~~v~f----------------------------------SpDG~~l~SGdsdG~v~~ 458 (503)
T KOG0282|consen 413 STVPPFRLNKKKRFEGHSVAGYSCQVDF----------------------------------SPDGRTLCSGDSDGKVNF 458 (503)
T ss_pred ecccccccCHhhhhcceeccCceeeEEE----------------------------------cCCCCeEEeecCCccEEE
Confidence 87643 23356678874433 4445 999999999999999999
Q ss_pred EeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCC-cEEEEeecCC
Q 005277 650 WDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRN-LLFAAGALSK 702 (704)
Q Consensus 650 Wd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g-~~La~gs~dg 702 (704)
||..+.. .+..++.|..++..+.|+|.. ..+|+|+.+|
T Consensus 459 wdwkt~k---------------l~~~lkah~~~ci~v~wHP~e~Skvat~~w~G 497 (503)
T KOG0282|consen 459 WDWKTTK---------------LVSKLKAHDQPCIGVDWHPVEPSKVATCGWDG 497 (503)
T ss_pred eechhhh---------------hhhccccCCcceEEEEecCCCcceeEecccCc
Confidence 9998853 467888999999999999964 5788888887
No 33
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.8e-32 Score=284.77 Aligned_cols=275 Identities=24% Similarity=0.443 Sum_probs=246.8
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEc
Q 005277 351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (704)
Q Consensus 351 ~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 430 (704)
...|+|++|++..++||+|+..|...+|.+.. ...+..+.-...+|..++|+
T Consensus 265 ~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~----------------------------f~lih~LSis~~~I~t~~~N 316 (893)
T KOG0291|consen 265 SSKVTAAAFHKGTNLLVVGFSSGEFGLYELPD----------------------------FNLIHSLSISDQKILTVSFN 316 (893)
T ss_pred ccceeeeeccCCceEEEEEecCCeeEEEecCC----------------------------ceEEEEeecccceeeEEEec
Confidence 37899999999999999999999999999876 23444444455789999999
Q ss_pred CCCCEEEEEeCC-CeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCee
Q 005277 431 PLGDFILSSSAD-TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVD 509 (704)
Q Consensus 431 p~~~~l~s~s~D-g~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~ 509 (704)
..|.+|+.|+.. |.+-||++.+..-+...++|...+.+++++|||+++|+|+.||.|+|||...+-+..+|..|.+.|+
T Consensus 317 ~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt 396 (893)
T KOG0291|consen 317 STGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVT 396 (893)
T ss_pred ccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceE
Confidence 999999977654 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCC-CCEEEEEEecCCCEEEEEeCCC-eEEEEeCCCCeeeeeecC
Q 005277 510 CVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-SMILSLAMSPDGRYMASGDEDG-TIMMWDLASGRCVTPLMG 587 (704)
Q Consensus 510 ~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-~~i~~l~~spdg~~l~sg~~dg-~I~iwdl~~~~~~~~~~~ 587 (704)
.+.|+..|+.+++.|-||+|+.||+...++.++|+... ....|++..|.|..+++|+.|. .|.+|++.+|+.+..+.|
T Consensus 397 ~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsG 476 (893)
T KOG0291|consen 397 AVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSG 476 (893)
T ss_pred EEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcC
Confidence 99999999999999999999999999999999997543 3678899999999999998876 699999999999999999
Q ss_pred CCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCc
Q 005277 588 HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGT 667 (704)
Q Consensus 588 h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~ 667 (704)
|.++|.+++| +|+++.|++||.|.+|++||+-.....
T Consensus 477 HEgPVs~l~f----------------------------------~~~~~~LaS~SWDkTVRiW~if~s~~~--------- 513 (893)
T KOG0291|consen 477 HEGPVSGLSF----------------------------------SPDGSLLASGSWDKTVRIWDIFSSSGT--------- 513 (893)
T ss_pred CCCcceeeEE----------------------------------ccccCeEEeccccceEEEEEeeccCce---------
Confidence 9999999999 999999999999999999999775321
Q ss_pred cccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277 668 NRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 702 (704)
Q Consensus 668 ~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg 702 (704)
+.++ .....|.+++|+|+|.-||+++.||
T Consensus 514 -----vEtl-~i~sdvl~vsfrPdG~elaVaTldg 542 (893)
T KOG0291|consen 514 -----VETL-EIRSDVLAVSFRPDGKELAVATLDG 542 (893)
T ss_pred -----eeeE-eeccceeEEEEcCCCCeEEEEEecc
Confidence 2222 3456799999999999999999987
No 34
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=4.8e-32 Score=265.79 Aligned_cols=280 Identities=21% Similarity=0.307 Sum_probs=242.3
Q ss_pred EEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCe
Q 005277 345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (704)
Q Consensus 345 ~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 424 (704)
.+|..|...|.+++.+|+.+++|+|+.|-.-.||++.+ ......+.+|...|
T Consensus 58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~----------------------------ge~~~eltgHKDSV 109 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDIST----------------------------GEFAGELTGHKDSV 109 (399)
T ss_pred eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccC----------------------------CcceeEecCCCCce
Confidence 46889999999999999999999999999999999876 23456678999999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccC
Q 005277 425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH 504 (704)
Q Consensus 425 ~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~ 504 (704)
+++.|+.+|.+|+||..+|.|+||...++.....+......+.=+.|+|.+..|+.|+.||.+-+|.+.+....+.+.||
T Consensus 110 t~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh 189 (399)
T KOG0296|consen 110 TCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGH 189 (399)
T ss_pred EEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCC
Confidence 99999999999999999999999999999988888755666777999999999999999999999999998899999999
Q ss_pred CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeec---------------------------------------
Q 005277 505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG--------------------------------------- 545 (704)
Q Consensus 505 ~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~--------------------------------------- 545 (704)
..+++|-.|.|+|+.+++|..||+|++|+..+++++..+.+
T Consensus 190 ~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~ 269 (399)
T KOG0296|consen 190 NSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVN 269 (399)
T ss_pred CCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEE
Confidence 99999999999999999999999999999999987765431
Q ss_pred ------------CCCCEEEEEE---ecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehcccccccc
Q 005277 546 ------------HRSMILSLAM---SPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKI 610 (704)
Q Consensus 546 ------------h~~~i~~l~~---spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~ 610 (704)
+...+.|+.+ +..-.+.|+|+-||+|.|||+...++.. +-.|...|..+.|
T Consensus 270 ~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~-~c~he~~V~~l~w------------- 335 (399)
T KOG0296|consen 270 CNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRH-ICEHEDGVTKLKW------------- 335 (399)
T ss_pred ecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhhe-eccCCCceEEEEE-------------
Confidence 1111122222 2233467889999999999998776544 4458888999999
Q ss_pred ccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEcc
Q 005277 611 SDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSR 690 (704)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~ 690 (704)
-+ ..+|++++.||.|+.||.++++ ++.++.+|..+|.+++.+|
T Consensus 336 ---------------------~~-t~~l~t~c~~g~v~~wDaRtG~---------------l~~~y~GH~~~Il~f~ls~ 378 (399)
T KOG0296|consen 336 ---------------------LN-TDYLLTACANGKVRQWDARTGQ---------------LKFTYTGHQMGILDFALSP 378 (399)
T ss_pred ---------------------cC-cchheeeccCceEEeeeccccc---------------eEEEEecCchheeEEEEcC
Confidence 55 6799999999999999999985 4678899999999999999
Q ss_pred CCcEEEEeecCCC
Q 005277 691 RNLLFAAGALSKT 703 (704)
Q Consensus 691 ~g~~La~gs~dgt 703 (704)
+.++++++|.|++
T Consensus 379 ~~~~vvT~s~D~~ 391 (399)
T KOG0296|consen 379 QKRLVVTVSDDNT 391 (399)
T ss_pred CCcEEEEecCCCe
Confidence 9999999999986
No 35
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-32 Score=290.70 Aligned_cols=295 Identities=26% Similarity=0.423 Sum_probs=264.0
Q ss_pred ccccCcCCCCCCCCCCCCCCCCChhHHHHHHHhccCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCc
Q 005277 295 RLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSS 374 (704)
Q Consensus 295 ~~~~~~~~~~p~~~~~~~lp~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~ 374 (704)
...+..+.++|....++++..++|...+.....+...+++|+.....+....-.+ .+.|+++.|+++|++||+|..+|.
T Consensus 162 ~~~p~rvLDaP~l~dDfY~nlldWss~n~laValg~~vylW~~~s~~v~~l~~~~-~~~vtSv~ws~~G~~LavG~~~g~ 240 (484)
T KOG0305|consen 162 PQTPYRVLDAPGLQDDFYLNLLDWSSANVLAVALGQSVYLWSASSGSVTELCSFG-EELVTSVKWSPDGSHLAVGTSDGT 240 (484)
T ss_pred cCChhhhccCCcccccHhhhHhhcccCCeEEEEecceEEEEecCCCceEEeEecC-CCceEEEEECCCCCEEEEeecCCe
Confidence 4457788999999999999999999888888999999999999887766655555 889999999999999999999999
Q ss_pred EEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccC-CccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 005277 375 LKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG-HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN 453 (704)
Q Consensus 375 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~ 453 (704)
|.|||... .+....+.+ |...|-+++|. +..+.+|+.|+.|..+|++..
T Consensus 241 v~iwD~~~----------------------------~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~ 290 (484)
T KOG0305|consen 241 VQIWDVKE----------------------------QKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRIS 290 (484)
T ss_pred EEEEehhh----------------------------ccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecc
Confidence 99999875 233344555 99999999999 677889999999999999988
Q ss_pred ceeEE-eecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcC-CCCEEEEE--ECCCcE
Q 005277 454 ANLVC-YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHI-NCNYIATG--SSDKTV 529 (704)
Q Consensus 454 ~~~~~-~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p-~~~~l~tg--s~dg~I 529 (704)
+.... +.+|...|+.++|++++.++|+|+.|+.+.|||.....+...+..|...|.+++|+| ...+||+| +.|++|
T Consensus 291 ~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i 370 (484)
T KOG0305|consen 291 QHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCI 370 (484)
T ss_pred hhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEE
Confidence 77665 889999999999999999999999999999999998899999999999999999999 46788885 479999
Q ss_pred EEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEE--EeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccc
Q 005277 530 RLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMAS--GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAY 607 (704)
Q Consensus 530 ~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s--g~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~ 607 (704)
++||..+|..+.... ..+.|.+|.|++..+-|++ |..++.|.||+..+.+++..+.+|...|..+++
T Consensus 371 ~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~---------- 439 (484)
T KOG0305|consen 371 KFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLAL---------- 439 (484)
T ss_pred EEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEE----------
Confidence 999999999988764 5678999999999876666 456779999999999999999999999999999
Q ss_pred cccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCC
Q 005277 608 LKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTS 655 (704)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~ 655 (704)
+|||..+++|+.|.++++|++-..
T Consensus 440 ------------------------SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 440 ------------------------SPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ------------------------CCCCCEEEEecccCcEEeccccCC
Confidence 999999999999999999999875
No 36
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-32 Score=282.74 Aligned_cols=280 Identities=23% Similarity=0.384 Sum_probs=251.2
Q ss_pred EeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEE
Q 005277 347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (704)
Q Consensus 347 ~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 426 (704)
+..+...|-|+.|+|...+++++-.+|.|.|||.++ ...++.+.-..-||.+
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyet----------------------------qtmVksfeV~~~PvRa 60 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYET----------------------------QTMVKSFEVSEVPVRA 60 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEeccc----------------------------ceeeeeeeecccchhh
Confidence 456788999999999999999999999999999876 2344445556678999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCC-CceeEEeccCC
Q 005277 427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR-IQPLRIMAGHL 505 (704)
Q Consensus 427 l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~-~~~~~~~~~~~ 505 (704)
..|-+..+++++|+.|..|++|+..++..+..|..|..-|++++.+|...+++++|.|-+|++||.+. ..+.++|.||.
T Consensus 61 ~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~ 140 (794)
T KOG0276|consen 61 AKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHE 140 (794)
T ss_pred heeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999986 46788999999
Q ss_pred CCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCC--CEEEEEeCCCeEEEEeCCCCeee
Q 005277 506 SDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG--RYMASGDEDGTIMMWDLASGRCV 582 (704)
Q Consensus 506 ~~V~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg--~~l~sg~~dg~I~iwdl~~~~~~ 582 (704)
.-|.+++|+| |.+.++++|-|++|++|.+.+..+..++.+|...|+|+.+-+-| .+|++|++|..|+|||..+..++
T Consensus 141 HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV 220 (794)
T KOG0276|consen 141 HYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCV 220 (794)
T ss_pred eEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHH
Confidence 9999999999 57899999999999999999999999999999999999999855 69999999999999999999999
Q ss_pred eeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccc
Q 005277 583 TPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTE 662 (704)
Q Consensus 583 ~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~ 662 (704)
+++.||...|..+.| +|.=.+++|||.||+|+||+-.+-..
T Consensus 221 ~TLeGHt~Nvs~v~f----------------------------------hp~lpiiisgsEDGTvriWhs~Ty~l----- 261 (794)
T KOG0276|consen 221 QTLEGHTNNVSFVFF----------------------------------HPELPIIISGSEDGTVRIWNSKTYKL----- 261 (794)
T ss_pred HHhhcccccceEEEe----------------------------------cCCCcEEEEecCCccEEEecCcceeh-----
Confidence 999999999999988 89999999999999999999877432
Q ss_pred cccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 663 EKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 663 ~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
..++.-.-..|.|++-.+.+..+++|...|.
T Consensus 262 ----------E~tLn~gleRvW~I~~~k~~~~i~vG~Deg~ 292 (794)
T KOG0276|consen 262 ----------EKTLNYGLERVWCIAAHKGDGKIAVGFDEGS 292 (794)
T ss_pred ----------hhhhhcCCceEEEEeecCCCCeEEEeccCCc
Confidence 3345555667888888887777888777664
No 37
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6e-32 Score=286.09 Aligned_cols=279 Identities=24% Similarity=0.425 Sum_probs=247.7
Q ss_pred EeeCCCCEEEEEE-cCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277 347 FINTHNGLNCASI-SQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (704)
Q Consensus 347 ~~~~~~~V~~~~f-s~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (704)
+.+.++.|..+.| .|+.++||++++.+.+|+|++.++ ....+.||+..|.
T Consensus 319 ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~-----------------------------~c~ii~GH~e~vl 369 (775)
T KOG0319|consen 319 IVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTS-----------------------------YCQIIPGHTEAVL 369 (775)
T ss_pred hcCCchhheeeeecCCccceEEEEeCCCceEEEecCCC-----------------------------ceEEEeCchhhee
Confidence 4577788888887 567899999999999999987652 2347889999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCc----eeEEeecCCcCeeEEEEcCC-CCEEEEEeCCCeEEEEECCCCce---
Q 005277 426 SASFSPLGDFILSSSADTTIRLWSTKLNA----NLVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRIQP--- 497 (704)
Q Consensus 426 ~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~----~~~~~~~h~~~V~~v~~sp~-~~~l~sgs~dg~i~lwd~~~~~~--- 497 (704)
++....+|.+|+|||.|.++++|.++.+. ++....+|+..|.+++++.. ..+|+++|.|+++++|++...+.
T Consensus 370 SL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~ 449 (775)
T KOG0319|consen 370 SLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF 449 (775)
T ss_pred eeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc
Confidence 99966678899999999999999885432 35667899999999999774 46899999999999999976221
Q ss_pred --e----EEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeE
Q 005277 498 --L----RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTI 571 (704)
Q Consensus 498 --~----~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I 571 (704)
. .....|..+|+|++.+|+..+|||||.|++.+||++.......++.||...|.|+.|+|..+.+++++.|++|
T Consensus 450 ~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~Tv 529 (775)
T KOG0319|consen 450 PIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTV 529 (775)
T ss_pred cceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceE
Confidence 1 1234799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEe
Q 005277 572 MMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWD 651 (704)
Q Consensus 572 ~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd 651 (704)
+||.+.+..+++++.||+..|....| -.+|..|++++.||-|++|+
T Consensus 530 KIW~is~fSClkT~eGH~~aVlra~F----------------------------------~~~~~qliS~~adGliKlWn 575 (775)
T KOG0319|consen 530 KIWSISTFSCLKTFEGHTSAVLRASF----------------------------------IRNGKQLISAGADGLIKLWN 575 (775)
T ss_pred EEEEeccceeeeeecCccceeEeeee----------------------------------eeCCcEEEeccCCCcEEEEe
Confidence 99999999999999999999999999 77899999999999999999
Q ss_pred CCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 652 VTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
+.++. ++.++..|...|.+++-+|....+++|+.||.
T Consensus 576 ikt~e---------------C~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~ 612 (775)
T KOG0319|consen 576 IKTNE---------------CEMTLDAHNDRVWALSVSPLLDMFVTGGGDGR 612 (775)
T ss_pred ccchh---------------hhhhhhhccceeEEEeecCccceeEecCCCeE
Confidence 99874 57788999999999999999999999999873
No 38
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.4e-32 Score=266.54 Aligned_cols=242 Identities=26% Similarity=0.501 Sum_probs=226.2
Q ss_pred ccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEE
Q 005277 411 KRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIW 490 (704)
Q Consensus 411 ~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lw 490 (704)
.+.++.+.+|.+.|.|+++.|-+.++++|+.|++|+|||+.+++...++.+|...|..+++|+...|+++++.|+.|+.|
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCw 220 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCW 220 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEE
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCe
Q 005277 491 SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT 570 (704)
Q Consensus 491 d~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~ 570 (704)
|++..+.++.+.||.+.|.|++.||.-+.|++|+.|.++|+||+++...+.++.||..+|.++.+.|-...+++|+.|++
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~t 300 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDST 300 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888999999999
Q ss_pred EEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEE
Q 005277 571 IMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLW 650 (704)
Q Consensus 571 I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iW 650 (704)
|++||++.|+.+.++..|...|.++.. +|....+|+++.| .|+-|
T Consensus 301 vrlWDl~agkt~~tlt~hkksvral~l----------------------------------hP~e~~fASas~d-nik~w 345 (460)
T KOG0285|consen 301 VRLWDLRAGKTMITLTHHKKSVRALCL----------------------------------HPKENLFASASPD-NIKQW 345 (460)
T ss_pred EEEeeeccCceeEeeecccceeeEEec----------------------------------CCchhhhhccCCc-cceec
Confidence 999999999999999999999999988 9999999999987 69999
Q ss_pred eCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 651 DVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 651 d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
++..+.. +..+.+|+.-|.+++.+.||- +++|+.+|+
T Consensus 346 ~~p~g~f---------------~~nlsgh~~iintl~~nsD~v-~~~G~dng~ 382 (460)
T KOG0285|consen 346 KLPEGEF---------------LQNLSGHNAIINTLSVNSDGV-LVSGGDNGS 382 (460)
T ss_pred cCCccch---------------hhccccccceeeeeeeccCce-EEEcCCceE
Confidence 9988754 455778899999999999884 556766653
No 39
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=4.8e-33 Score=270.19 Aligned_cols=258 Identities=27% Similarity=0.572 Sum_probs=226.8
Q ss_pred HHhcc-CeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCccc
Q 005277 325 LEDLR-NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRED 403 (704)
Q Consensus 325 ~~~~~-~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~ 403 (704)
+..++ +.+++|+... -.|.+++.+|.+.|.|+.|. .+.|++|++|.+|+|||+++
T Consensus 211 VSGlrDnTikiWD~n~-~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~t--------------------- 266 (499)
T KOG0281|consen 211 VSGLRDNTIKIWDKNS-LECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNT--------------------- 266 (499)
T ss_pred hcccccCceEEecccc-HHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccC---------------------
Confidence 34444 4788887653 34667889999999999995 56999999999999999987
Q ss_pred ccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce---eEEeecCCcCeeEEEEcCCCCEEEE
Q 005277 404 IIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN---LVCYKGHNYPVWDVQFNPQGHYFAS 480 (704)
Q Consensus 404 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~---~~~~~~h~~~V~~v~~sp~~~~l~s 480 (704)
+.....+.+|...|..+.|+ +.+++++|.|.++.+||+.+... ...+.||...|..+.|+ .+|+++
T Consensus 267 -------ge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVs 335 (499)
T KOG0281|consen 267 -------GEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVS 335 (499)
T ss_pred -------CchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEE
Confidence 45667788999999999998 77999999999999999987653 34567999999999995 669999
Q ss_pred EeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCC
Q 005277 481 SSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560 (704)
Q Consensus 481 gs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~ 560 (704)
++.|++|++|++.+.+.++++.+|...|.|+.+ +++++++|++|.+|++||+..|.+++.+.||..-|.|+.| |.+
T Consensus 336 ASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~k 411 (499)
T KOG0281|consen 336 ASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNK 411 (499)
T ss_pred ecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCc
Confidence 999999999999999999999999999999986 6889999999999999999999999999999999999999 578
Q ss_pred EEEEEeCCCeEEEEeCCCCe---------eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeeccc
Q 005277 561 YMASGDEDGTIMMWDLASGR---------CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCA 631 (704)
Q Consensus 561 ~l~sg~~dg~I~iwdl~~~~---------~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (704)
.+++|+.||+|++||+..+. ++.++..|++.|..+.|
T Consensus 412 rIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF---------------------------------- 457 (499)
T KOG0281|consen 412 RIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF---------------------------------- 457 (499)
T ss_pred eeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee----------------------------------
Confidence 89999999999999998753 34556679999999988
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCCCcc
Q 005277 632 SCEGSLLASGSADCTVKLWDVTTSTK 657 (704)
Q Consensus 632 s~~g~~lasgs~Dg~V~iWd~~~~~~ 657 (704)
|...+++++.|.+|.|||+..+..
T Consensus 458 --D~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 458 --DEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred --cceEEEeccCCCeEEEEEcCCCCc
Confidence 567899999999999999988754
No 40
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.5e-31 Score=292.19 Aligned_cols=249 Identities=32% Similarity=0.620 Sum_probs=227.8
Q ss_pred EEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC
Q 005277 344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (704)
Q Consensus 344 ~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 423 (704)
...+.+|...|++++|+||++++++|+.|++|+|||+.. ....++.+.+|...
T Consensus 196 ~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~---------------------------~~~~~~~l~gH~~~ 248 (456)
T KOG0266|consen 196 LRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKD---------------------------DGRNLKTLKGHSTY 248 (456)
T ss_pred hccccccccceeeeEECCCCcEEEEecCCceEEEeeccC---------------------------CCeEEEEecCCCCc
Confidence 444578999999999999999999999999999999843 13577888999999
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCc--eeEEe
Q 005277 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ--PLRIM 501 (704)
Q Consensus 424 V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~--~~~~~ 501 (704)
|++++|+|+++++++|+.|++|+|||+++++++..+.+|..+|++++|++++++|++++.|+.|++||+.++. +...+
T Consensus 249 v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~ 328 (456)
T KOG0266|consen 249 VTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLL 328 (456)
T ss_pred eEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 56777
Q ss_pred ccCCCC--eeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCC---EEEEEEecCCCEEEEEeCCCeEEEEeC
Q 005277 502 AGHLSD--VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM---ILSLAMSPDGRYMASGDEDGTIMMWDL 576 (704)
Q Consensus 502 ~~~~~~--V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~---i~~l~~spdg~~l~sg~~dg~I~iwdl 576 (704)
.++... +.+++|+|++.++++++.|+.+++||++.+.++..+.+|... +.+...++.|.++++|+.|+.|.+||+
T Consensus 329 ~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~ 408 (456)
T KOG0266|consen 329 SGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDS 408 (456)
T ss_pred cCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeC
Confidence 776665 999999999999999999999999999999999999999875 444556779999999999999999999
Q ss_pred CCCeeeeeecCC-CceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEe--CCCcEEEEeCC
Q 005277 577 ASGRCVTPLMGH-TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGS--ADCTVKLWDVT 653 (704)
Q Consensus 577 ~~~~~~~~~~~h-~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs--~Dg~V~iWd~~ 653 (704)
.++..+..+.+| ...+..+.+ ++..+++++++ .|+.+++|...
T Consensus 409 ~s~~~~~~l~~h~~~~~~~~~~----------------------------------~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 409 SSGGILQRLEGHSKAAVSDLSS----------------------------------HPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CccchhhhhcCCCCCceecccc----------------------------------CCCcCeeeecCcCCCceEEEecCC
Confidence 999999999999 888889988 99999999998 78999999764
No 41
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.6e-32 Score=285.30 Aligned_cols=258 Identities=27% Similarity=0.524 Sum_probs=229.3
Q ss_pred CCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccC
Q 005277 340 PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG 419 (704)
Q Consensus 340 p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (704)
|...+..+.+|.+.|.+++...+|.+||+|+.|.+|++|.++... .....+....|
T Consensus 354 ~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~------------------------~~~~~~a~~~g 409 (775)
T KOG0319|consen 354 PTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNC------------------------SKSLCVAQANG 409 (775)
T ss_pred CCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCc------------------------chhhhhhhhcc
Confidence 333344678999999999977778999999999999999984311 11234556679
Q ss_pred CccCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCce-----e----EEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEE
Q 005277 420 HSGPVYSASFSPLG-DFILSSSADTTIRLWSTKLNAN-----L----VCYKGHNYPVWDVQFNPQGHYFASSSHDRTARI 489 (704)
Q Consensus 420 h~~~V~~l~~sp~~-~~l~s~s~Dg~I~lwd~~~~~~-----~----~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~l 489 (704)
|++.|.+++++..+ .+|+++|.|+++++|++...+. . .+...|...|.+++.+|+.+.+||||.|++++|
T Consensus 410 H~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKi 489 (775)
T KOG0319|consen 410 HTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKI 489 (775)
T ss_pred cccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceee
Confidence 99999999997765 4789999999999999976221 1 123469999999999999999999999999999
Q ss_pred EECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCC
Q 005277 490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG 569 (704)
Q Consensus 490 wd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg 569 (704)
|+++.......+.||...|.||.|+|+.+.++|+|.|++|+||.+.+..|+.+|.||...|..+.|-.+|..|++++.||
T Consensus 490 W~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adG 569 (775)
T KOG0319|consen 490 WDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADG 569 (775)
T ss_pred ecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEE
Q 005277 570 TIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKL 649 (704)
Q Consensus 570 ~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~i 649 (704)
.|++|++.++.++.++.+|...||++.. ++.+.+++||+.||.|.+
T Consensus 570 liKlWnikt~eC~~tlD~H~DrvWaL~~----------------------------------~~~~~~~~tgg~Dg~i~~ 615 (775)
T KOG0319|consen 570 LIKLWNIKTNECEMTLDAHNDRVWALSV----------------------------------SPLLDMFVTGGGDGRIIF 615 (775)
T ss_pred cEEEEeccchhhhhhhhhccceeEEEee----------------------------------cCccceeEecCCCeEEEE
Confidence 9999999999999999999999999998 899999999999999999
Q ss_pred EeCCCC
Q 005277 650 WDVTTS 655 (704)
Q Consensus 650 Wd~~~~ 655 (704)
|.=.+.
T Consensus 616 wkD~Te 621 (775)
T KOG0319|consen 616 WKDVTE 621 (775)
T ss_pred eecCcH
Confidence 975543
No 42
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.5e-31 Score=255.98 Aligned_cols=285 Identities=21% Similarity=0.296 Sum_probs=241.8
Q ss_pred eCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEE
Q 005277 349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS 428 (704)
Q Consensus 349 ~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 428 (704)
+....+-|..|||||++|++|+.||.|.+||..+++...-. .......+.-|..+|.|+.
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDL--------------------kYQAqd~fMMmd~aVlci~ 270 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDL--------------------KYQAQDNFMMMDDAVLCIS 270 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhh--------------------hhhhhcceeecccceEEEe
Confidence 44556889999999999999999999999998764432210 0112223455789999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceeEEee-cCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCC
Q 005277 429 FSPLGDFILSSSADTTIRLWSTKLNANLVCYK-GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD 507 (704)
Q Consensus 429 ~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~-~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~ 507 (704)
|+.|...|++|+.||.|++|.+.+|.|+..|. .|+..|+++.|+.|+..+++++.|.++++.-+..++.+..+.||.+-
T Consensus 271 FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSy 350 (508)
T KOG0275|consen 271 FSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSY 350 (508)
T ss_pred ecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCcccc
Confidence 99999999999999999999999999999987 89999999999999999999999999999999999999999999999
Q ss_pred eeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeec--CCCCEEEEEEec-CCCEEEEEeCCCeEEEEeCCCCeeeee
Q 005277 508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG--HRSMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVTP 584 (704)
Q Consensus 508 V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~--h~~~i~~l~~sp-dg~~l~sg~~dg~I~iwdl~~~~~~~~ 584 (704)
|+...|.++|.++++++.||+|++|+..+..|+.+|+. ...+|.++-.-| +...++++...++|.|.++ .|+.++.
T Consensus 351 vn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrs 429 (508)
T KOG0275|consen 351 VNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRS 429 (508)
T ss_pred ccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEee
Confidence 99999999999999999999999999999999999874 345788888777 5568888999999999996 5777777
Q ss_pred ecCCC---ceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccccc
Q 005277 585 LMGHT---SCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKT 661 (704)
Q Consensus 585 ~~~h~---~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~ 661 (704)
+.... +...+. |.||.|.++.+.+.|+.++.|.+.++..
T Consensus 430 fsSGkREgGdFi~~----------------------------------~lSpkGewiYcigED~vlYCF~~~sG~L---- 471 (508)
T KOG0275|consen 430 FSSGKREGGDFINA----------------------------------ILSPKGEWIYCIGEDGVLYCFSVLSGKL---- 471 (508)
T ss_pred eccCCccCCceEEE----------------------------------EecCCCcEEEEEccCcEEEEEEeecCce----
Confidence 74321 222222 2399999999999999999999998753
Q ss_pred ccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 662 EEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 662 ~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
-.+++.|...|..+.-+|..++||+-+.||.
T Consensus 472 -----------E~tl~VhEkdvIGl~HHPHqNllAsYsEDgl 502 (508)
T KOG0275|consen 472 -----------ERTLPVHEKDVIGLTHHPHQNLLASYSEDGL 502 (508)
T ss_pred -----------eeeeecccccccccccCcccchhhhhcccch
Confidence 3466778888999999999999999888874
No 43
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.3e-30 Score=266.14 Aligned_cols=285 Identities=24% Similarity=0.364 Sum_probs=234.2
Q ss_pred EEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC
Q 005277 344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (704)
Q Consensus 344 ~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 423 (704)
..++..|..=|+|+.|||||.++|+.+.||.|.|||=.+..... .+..-.+|.+.
T Consensus 183 k~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg-------------------------~l~~~~aHkGs 237 (603)
T KOG0318|consen 183 KSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVG-------------------------ELEDSDAHKGS 237 (603)
T ss_pred eecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEE-------------------------EecCCCCcccc
Confidence 34667788889999999999999999999999999965422111 11113489999
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCc---CeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEE
Q 005277 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNY---PVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI 500 (704)
Q Consensus 424 V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~---~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~ 500 (704)
|++++|+||+..++++|.|.+++|||+.+.+++.++..... .-..+-|- +..|++.+.+|++.+++.....++..
T Consensus 238 IfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~ 315 (603)
T KOG0318|consen 238 IFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKV 315 (603)
T ss_pred EEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhhe
Confidence 99999999999999999999999999999999888764332 22334453 66799999999999999999999999
Q ss_pred eccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEE--------------------------------------
Q 005277 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI-------------------------------------- 542 (704)
Q Consensus 501 ~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~-------------------------------------- 542 (704)
+.+|...|+++..+|++.+|++|+.||.|.-||..+|..-+.
T Consensus 316 i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~ 395 (603)
T KOG0318|consen 316 ISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNG 395 (603)
T ss_pred ecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCc
Confidence 999999999999999999999999999999999865532110
Q ss_pred -----------------------------------eecC--------CCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCC
Q 005277 543 -----------------------------------FIGH--------RSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579 (704)
Q Consensus 543 -----------------------------------~~~h--------~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~ 579 (704)
+..+ .-...+++++|++..+++|+.||.|+||.+..+
T Consensus 396 ~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~ 475 (603)
T KOG0318|consen 396 YTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGD 475 (603)
T ss_pred ccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCC
Confidence 0001 112457889999999999999999999999876
Q ss_pred ee--eeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcc
Q 005277 580 RC--VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTK 657 (704)
Q Consensus 580 ~~--~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~ 657 (704)
.. ...+..|.++|+++++ |||+.+||+|...+.|.+||+.+...
T Consensus 476 ~l~ee~~~~~h~a~iT~vay----------------------------------Spd~~yla~~Da~rkvv~yd~~s~~~ 521 (603)
T KOG0318|consen 476 ELKEEAKLLEHRAAITDVAY----------------------------------SPDGAYLAAGDASRKVVLYDVASREV 521 (603)
T ss_pred cccceeeeecccCCceEEEE----------------------------------CCCCcEEEEeccCCcEEEEEcccCce
Confidence 53 3356779999999999 99999999999999999999998754
Q ss_pred ccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 658 VLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 658 ~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
....+.-|...|.+|+|+|++.++|+|+.|-+
T Consensus 522 --------------~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~ 553 (603)
T KOG0318|consen 522 --------------KTNRWAFHTAKINCVAWSPNNKLVATGSLDTN 553 (603)
T ss_pred --------------ecceeeeeeeeEEEEEeCCCceEEEeccccce
Confidence 13344458889999999999999999998853
No 44
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-31 Score=285.14 Aligned_cols=277 Identities=25% Similarity=0.446 Sum_probs=249.6
Q ss_pred eCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEE
Q 005277 349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS 428 (704)
Q Consensus 349 ~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 428 (704)
.....|-.++|+|...+++++--.|.|++||..- ...+..+..|.|||.+++
T Consensus 7 skSsRvKglsFHP~rPwILtslHsG~IQlWDYRM----------------------------~tli~rFdeHdGpVRgv~ 58 (1202)
T KOG0292|consen 7 SKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRM----------------------------GTLIDRFDEHDGPVRGVD 58 (1202)
T ss_pred cccccccceecCCCCCEEEEeecCceeeeehhhh----------------------------hhHHhhhhccCCccceee
Confidence 3456788999999999999999999999999764 335566889999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCe
Q 005277 429 FSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDV 508 (704)
Q Consensus 429 ~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V 508 (704)
|+|...+++||+.|-.|++|+..+.+++.++.+|-..|..+.|++.-.+++++|.|.+|+||++.+.+++..+.||..-|
T Consensus 59 FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYV 138 (1202)
T KOG0292|consen 59 FHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYV 138 (1202)
T ss_pred ecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCCCEEEEEECCCcEEEEeCCC--------C-------------------c--EEEEeecCCCCEEEEEEecCC
Q 005277 509 DCVRWHINCNYIATGSSDKTVRLWDVSS--------G-------------------E--CVRIFIGHRSMILSLAMSPDG 559 (704)
Q Consensus 509 ~~v~~~p~~~~l~tgs~dg~I~iwd~~~--------~-------------------~--~~~~~~~h~~~i~~l~~spdg 559 (704)
.|..|||....++++|-|.+||+||+.. + . ....+.||...|+-++|+|.-
T Consensus 139 McAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl 218 (1202)
T KOG0292|consen 139 MCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL 218 (1202)
T ss_pred EeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc
Confidence 9999999999999999999999999842 1 0 123457899999999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCe--eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCE
Q 005277 560 RYMASGDEDGTIMMWDLASGR--CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSL 637 (704)
Q Consensus 560 ~~l~sg~~dg~I~iwdl~~~~--~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 637 (704)
..+++|++|..|++|.+...+ .+.++++|.+.|.++-| +|..++
T Consensus 219 pliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlf----------------------------------hp~q~l 264 (1202)
T KOG0292|consen 219 PLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLF----------------------------------HPHQDL 264 (1202)
T ss_pred ceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEe----------------------------------cCccce
Confidence 999999999999999987544 46778999999999999 999999
Q ss_pred EEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277 638 LASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 702 (704)
Q Consensus 638 lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg 702 (704)
+++.|.|++|+|||+...+. +.+++........++-+|..+++|+|-..|
T Consensus 265 IlSnsEDksirVwDm~kRt~---------------v~tfrrendRFW~laahP~lNLfAAgHDsG 314 (1202)
T KOG0292|consen 265 ILSNSEDKSIRVWDMTKRTS---------------VQTFRRENDRFWILAAHPELNLFAAGHDSG 314 (1202)
T ss_pred eEecCCCccEEEEecccccc---------------eeeeeccCCeEEEEEecCCcceeeeecCCc
Confidence 99999999999999988643 566767778889999999999999887665
No 45
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=8.9e-31 Score=246.21 Aligned_cols=279 Identities=22% Similarity=0.382 Sum_probs=245.4
Q ss_pred EeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEE
Q 005277 347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (704)
Q Consensus 347 ~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 426 (704)
+.+|...|.+++|+-+|..||+|+.|+++.+|++.... ........+|.+.|-.
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r--------------------------~~~~~~~~gh~~svdq 69 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDR--------------------------FRKELVYRGHTDSVDQ 69 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchh--------------------------hhhhhcccCCCcchhh
Confidence 45778889999999999999999999999999997631 1223346789999999
Q ss_pred EEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCC
Q 005277 427 ASFSPLG-DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL 505 (704)
Q Consensus 427 l~~sp~~-~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~ 505 (704)
++|+|.. ..+++++.|.+|++||++.++++.......+.+ -+.|+|+|.+++.++.|..|.+.|.++.+...... ..
T Consensus 70 l~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~ 147 (313)
T KOG1407|consen 70 LCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FK 147 (313)
T ss_pred heeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc-cc
Confidence 9998854 578899999999999999999998887655555 58999999999999999999999999887766554 44
Q ss_pred CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeee
Q 005277 506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL 585 (704)
Q Consensus 506 ~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~ 585 (704)
..+..++|+-++++++.....|+|.|.....-+++..++.|.....||.|+|+|+++|+|+.|..+.+||+...-+++.+
T Consensus 148 ~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~i 227 (313)
T KOG1407|consen 148 FEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCI 227 (313)
T ss_pred ceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheee
Confidence 56788899977777777777899999999999999999999999999999999999999999999999999998899999
Q ss_pred cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccccccccc
Q 005277 586 MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKS 665 (704)
Q Consensus 586 ~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~ 665 (704)
..+.-+|..++| |.+|++||+||+|..|-|=++++|.++.++
T Consensus 228 sRldwpVRTlSF----------------------------------S~dg~~lASaSEDh~IDIA~vetGd~~~eI---- 269 (313)
T KOG1407|consen 228 SRLDWPVRTLSF----------------------------------SHDGRMLASASEDHFIDIAEVETGDRVWEI---- 269 (313)
T ss_pred ccccCceEEEEe----------------------------------ccCcceeeccCccceEEeEecccCCeEEEe----
Confidence 999999999999 999999999999999999999999775433
Q ss_pred CccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 666 GTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 666 ~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
.+.+|-+.|+|+|...+||.++.|+.
T Consensus 270 ------------~~~~~t~tVAWHPk~~LLAyA~ddk~ 295 (313)
T KOG1407|consen 270 ------------PCEGPTFTVAWHPKRPLLAYACDDKD 295 (313)
T ss_pred ------------eccCCceeEEecCCCceeeEEecCCC
Confidence 35678899999999999999998864
No 46
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=6.4e-31 Score=283.89 Aligned_cols=269 Identities=23% Similarity=0.357 Sum_probs=211.1
Q ss_pred eCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCcccccccc---------------C--CCC------CC-------
Q 005277 349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGL---------------Q--GEN------DT------- 398 (704)
Q Consensus 349 ~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~---------------~--~~~------~~------- 398 (704)
.|.+.|.|+.||+||+|||+|+.||.|+||.+............ + ... ..
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 68899999999999999999999999999998762111000000 0 000 00
Q ss_pred CCc--ccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcC-CC
Q 005277 399 TPR--EDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QG 475 (704)
Q Consensus 399 ~~~--~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp-~~ 475 (704)
.+. .......-...++..+.||.+.|.++.||. +.+|+++|.|.|||||++....|+.+|. |..-|+||+|+| |.
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDD 422 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDD 422 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCC
Confidence 000 000001112346677899999999999996 5689999999999999999999999997 999999999999 89
Q ss_pred CEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEee---------cC
Q 005277 476 HYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI---------GH 546 (704)
Q Consensus 476 ~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~---------~h 546 (704)
+||++|+-||.||||++...+.+.....+ .-|++++|.|+|++.++|+.+|.+++|+....+.+..+. .|
T Consensus 423 ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~ 501 (712)
T KOG0283|consen 423 RYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQG 501 (712)
T ss_pred CcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccC
Confidence 99999999999999999887665554444 789999999999999999999999999998776655442 12
Q ss_pred CCCEEEEEEecC-CCEEEEEeCCCeEEEEeCCCCeeeeeecCCCcee--eeeeeeeeehccccccccccccccceeeeee
Q 005277 547 RSMILSLAMSPD-GRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCV--WTLAYRFLLLVTNAYLKISDKVSTGFLFYSL 623 (704)
Q Consensus 547 ~~~i~~l~~spd-g~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V--~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (704)
. .|+.+.|.|. ...|++.+.|..|+|+|.+...++..++|+...- ....|
T Consensus 502 ~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asf-------------------------- 554 (712)
T KOG0283|consen 502 K-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASF-------------------------- 554 (712)
T ss_pred c-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeE--------------------------
Confidence 3 7999999984 3457777899999999999999999998865322 23344
Q ss_pred eEEeecccCCCCCEEEEEeCCCcEEEEeCCCC
Q 005277 624 TIIYFGCASCEGSLLASGSADCTVKLWDVTTS 655 (704)
Q Consensus 624 ~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~ 655 (704)
+.||++|++|+.|..|+||++...
T Consensus 555 --------s~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 555 --------SSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred --------ccCCCEEEEeecCceEEEEeCCCC
Confidence 789999999999999999998543
No 47
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=2.2e-29 Score=258.12 Aligned_cols=259 Identities=37% Similarity=0.645 Sum_probs=232.0
Q ss_pred CeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCC
Q 005277 330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG 409 (704)
Q Consensus 330 ~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (704)
..+.+|...... ....+..|...+.++.|+|++++|++++.||.|++|++...
T Consensus 31 g~i~i~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~-------------------------- 83 (289)
T cd00200 31 GTIKVWDLETGE-LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG-------------------------- 83 (289)
T ss_pred cEEEEEEeeCCC-cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc--------------------------
Confidence 456666544322 33456678888999999999999999999999999998751
Q ss_pred CccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEE
Q 005277 410 RKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARI 489 (704)
Q Consensus 410 ~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~l 489 (704)
.....+.+|...|.++.|++++.++++++.||.|++||+.+++....+..|...|.++.|+|++.++++++.|+.+++
T Consensus 84 --~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i 161 (289)
T cd00200 84 --ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKL 161 (289)
T ss_pred --cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEE
Confidence 233455678889999999999888888888999999999988888889899999999999999999998888999999
Q ss_pred EECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCC
Q 005277 490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG 569 (704)
Q Consensus 490 wd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg 569 (704)
||+++++.+..+..|...+.++.|+|+++.+++++.++.|++||+++++.+..+..|...+.+++|+|++.++++++.||
T Consensus 162 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 241 (289)
T cd00200 162 WDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDG 241 (289)
T ss_pred EEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCC
Confidence 99999888988989999999999999999999999999999999999999998888999999999999999999888899
Q ss_pred eEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEE
Q 005277 570 TIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKL 649 (704)
Q Consensus 570 ~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~i 649 (704)
.|++||+.+++.+..+..|...+.++.| ++++.+|++++.||.|++
T Consensus 242 ~i~i~~~~~~~~~~~~~~~~~~i~~~~~----------------------------------~~~~~~l~~~~~d~~i~i 287 (289)
T cd00200 242 TIRVWDLRTGECVQTLSGHTNSVTSLAW----------------------------------SPDGKRLASGSADGTIRI 287 (289)
T ss_pred cEEEEEcCCceeEEEccccCCcEEEEEE----------------------------------CCCCCEEEEecCCCeEEe
Confidence 9999999999999999999999999999 999999999999999999
Q ss_pred Ee
Q 005277 650 WD 651 (704)
Q Consensus 650 Wd 651 (704)
|+
T Consensus 288 w~ 289 (289)
T cd00200 288 WD 289 (289)
T ss_pred cC
Confidence 96
No 48
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=2.5e-30 Score=254.76 Aligned_cols=274 Identities=28% Similarity=0.498 Sum_probs=235.9
Q ss_pred eeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEE
Q 005277 348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA 427 (704)
Q Consensus 348 ~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 427 (704)
.-|.+-|.++... +++|++|+.||.++||+..+ +......||+++|.++
T Consensus 102 ~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~G-----------------------------k~~~~~~Ght~~ik~v 150 (423)
T KOG0313|consen 102 FLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKG-----------------------------KSIKTIVGHTGPIKSV 150 (423)
T ss_pred ccchhhhhhhccc--CceEEEeecCCeeEEEecCC-----------------------------ceEEEEecCCcceeee
Confidence 4577888888887 78999999999999999764 5667788999999999
Q ss_pred EEcCCCC---EEEEEeCCCeEEEEeCCCCce----eEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECC-------
Q 005277 428 SFSPLGD---FILSSSADTTIRLWSTKLNAN----LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD------- 493 (704)
Q Consensus 428 ~~sp~~~---~l~s~s~Dg~I~lwd~~~~~~----~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~------- 493 (704)
+|.-.+. .+++++.|.++++|.++.+.. +..-+||...|-+|...++|..|++|+.|.++.+|+..
T Consensus 151 ~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~ 230 (423)
T KOG0313|consen 151 AWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDEL 230 (423)
T ss_pred EEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccc
Confidence 9865444 499999999999999887654 33345999999999999999999999999999999932
Q ss_pred ------------------CCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEE
Q 005277 494 ------------------RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAM 555 (704)
Q Consensus 494 ------------------~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~ 555 (704)
+..|+..+.||..+|.+|.|++ ...+++++.|.+|+.||+.++.++..+.+ ...+.|+..
T Consensus 231 E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~ 308 (423)
T KOG0313|consen 231 ESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISY 308 (423)
T ss_pred cccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeec
Confidence 2346778899999999999987 77899999999999999999999887754 567999999
Q ss_pred ecCCCEEEEEeCCCeEEEEeCCCCe---eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccC
Q 005277 556 SPDGRYMASGDEDGTIMMWDLASGR---CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCAS 632 (704)
Q Consensus 556 spdg~~l~sg~~dg~I~iwdl~~~~---~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 632 (704)
+|..++|++|+.|..|++||.+++. ...++.+|.+.|.++.| +
T Consensus 309 ~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkw----------------------------------s 354 (423)
T KOG0313|consen 309 SPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKW----------------------------------S 354 (423)
T ss_pred ccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheec----------------------------------C
Confidence 9999999999999999999998763 45678899999999999 7
Q ss_pred CCC-CEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 633 CEG-SLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 633 ~~g-~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
|.. .+|++|+.||++++||+++.. .+++.+.+|...|.++.|+.. .++++|+.|++
T Consensus 355 p~~~~~~~S~S~D~t~klWDvRS~k--------------~plydI~~h~DKvl~vdW~~~-~~IvSGGaD~~ 411 (423)
T KOG0313|consen 355 PTNEFQLVSGSYDNTVKLWDVRSTK--------------APLYDIAGHNDKVLSVDWNEG-GLIVSGGADNK 411 (423)
T ss_pred CCCceEEEEEecCCeEEEEEeccCC--------------CcceeeccCCceEEEEeccCC-ceEEeccCcce
Confidence 765 578999999999999999865 247888999999999999754 46888888864
No 49
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=3.2e-30 Score=285.00 Aligned_cols=307 Identities=23% Similarity=0.384 Sum_probs=248.5
Q ss_pred EEeeCCC-CEEEEEEcCCCCEEEEEe--CCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCcc
Q 005277 346 TFINTHN-GLNCASISQDGSLVAGGF--SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG 422 (704)
Q Consensus 346 ~~~~~~~-~V~~~~fs~dg~~lasg~--~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 422 (704)
++.+|++ .|.+++.+|||..+|+|+ .||.++||+........... .....+.......|.+
T Consensus 7 ~wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~----------------~~~l~k~l~~m~~h~~ 70 (942)
T KOG0973|consen 7 TWVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEK----------------NENLPKHLCTMDDHDG 70 (942)
T ss_pred cccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhh----------------hcccchhheeeccccC
Confidence 4566654 589999999999999999 89999999976521111000 0002345566778999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEeCCC------------------CceeEEeecCCcCeeEEEEcCCCCEEEEEeCC
Q 005277 423 PVYSASFSPLGDFILSSSADTTIRLWSTKL------------------NANLVCYKGHNYPVWDVQFNPQGHYFASSSHD 484 (704)
Q Consensus 423 ~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~------------------~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~d 484 (704)
.|+|+.|+|||++||+||.|+.|.||.... ++++..+.+|...|.+++|+|++.++++++.|
T Consensus 71 sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~D 150 (942)
T KOG0973|consen 71 SVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLD 150 (942)
T ss_pred ceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEeccc
Confidence 999999999999999999999999998772 23567788999999999999999999999999
Q ss_pred CeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCC------CCEEEEEEecC
Q 005277 485 RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR------SMILSLAMSPD 558 (704)
Q Consensus 485 g~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~------~~i~~l~~spd 558 (704)
++|.+|+..+...+..+.+|.+.|..+.|.|-|+|||+-+.|++|++|++.+-...+.+.++- .....+.||||
T Consensus 151 nsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPD 230 (942)
T KOG0973|consen 151 NSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPD 230 (942)
T ss_pred ceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCC
Confidence 999999999999999999999999999999999999999999999999987766666665432 35788999999
Q ss_pred CCEEEEEe----CCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCC
Q 005277 559 GRYMASGD----EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCE 634 (704)
Q Consensus 559 g~~l~sg~----~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 634 (704)
|.+|++.. .-.++.|.+-.+.+.-..+-||.+++.++.|++..+-....... +..
T Consensus 231 G~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~---------------------~~~ 289 (942)
T KOG0973|consen 231 GHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGT---------------------STQ 289 (942)
T ss_pred cCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCC---------------------ccC
Confidence 99999853 34579999988888888999999999999996544433221000 222
Q ss_pred CC----EEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 635 GS----LLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 635 g~----~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
++ .+|+||.|++|.||......++ +....-.+.+|..++|+|||..|.++|.|||
T Consensus 290 ~~~~y~i~AvgSqDrSlSVW~T~~~RPl--------------~vi~~lf~~SI~DmsWspdG~~LfacS~DGt 348 (942)
T KOG0973|consen 290 PNCYYCIAAVGSQDRSLSVWNTALPRPL--------------FVIHNLFNKSIVDMSWSPDGFSLFACSLDGT 348 (942)
T ss_pred CCcceEEEEEecCCccEEEEecCCCCch--------------hhhhhhhcCceeeeeEcCCCCeEEEEecCCe
Confidence 22 7899999999999998766543 2223345678999999999999999999997
No 50
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.6e-30 Score=265.81 Aligned_cols=241 Identities=26% Similarity=0.475 Sum_probs=216.8
Q ss_pred ccCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCC
Q 005277 328 LRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP 407 (704)
Q Consensus 328 ~~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (704)
+...+.+|+-..... ...+.-..-+|.++.|-.-.+++++|+.|..|+||+.++
T Consensus 33 ynG~V~IWnyetqtm-VksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt------------------------- 86 (794)
T KOG0276|consen 33 YNGDVQIWNYETQTM-VKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT------------------------- 86 (794)
T ss_pred ecCeeEEEeccccee-eeeeeecccchhhheeeeccceEEEecCCceEEEEeccc-------------------------
Confidence 455777886544322 223455667899999999999999999999999999987
Q ss_pred CCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-ceeEEeecCCcCeeEEEEcC-CCCEEEEEeCCC
Q 005277 408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN-ANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDR 485 (704)
Q Consensus 408 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~-~~~~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg 485 (704)
...+..+.+|+.-|.+++.+|...+++|+|.|-+|++||.+.. .+.++|.||..-|.+++|+| |.+.|+++|-|+
T Consensus 87 ---~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDr 163 (794)
T KOG0276|consen 87 ---GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDR 163 (794)
T ss_pred ---ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccc
Confidence 4567888999999999999999999999999999999999854 67889999999999999999 778999999999
Q ss_pred eEEEEECCCCceeEEeccCCCCeeEEEEcCC--CCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEE
Q 005277 486 TARIWSMDRIQPLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMA 563 (704)
Q Consensus 486 ~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~--~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~ 563 (704)
+|++|.+....+..++.+|...|+|+.|-+- ..||++|+.|.+|++||.++..|++++.||...|..+.|+|.-..++
T Consensus 164 TVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiii 243 (794)
T KOG0276|consen 164 TVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIII 243 (794)
T ss_pred cEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEE
Confidence 9999999999999999999999999999874 47999999999999999999999999999999999999999999999
Q ss_pred EEeCCCeEEEEeCCCCeeeeeecCCCceeeeeee
Q 005277 564 SGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY 597 (704)
Q Consensus 564 sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~ 597 (704)
+|++||+++||.-.+-+...++.-.-..+|+++.
T Consensus 244 sgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~ 277 (794)
T KOG0276|consen 244 SGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAA 277 (794)
T ss_pred EecCCccEEEecCcceehhhhhhcCCceEEEEee
Confidence 9999999999999998888888777788998876
No 51
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=4.3e-29 Score=236.17 Aligned_cols=259 Identities=19% Similarity=0.323 Sum_probs=218.5
Q ss_pred cCeEeecCCC-CCCeEEEEEe--eCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCccccc
Q 005277 329 RNRVHLSSAA-LPSVSFYTFI--NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII 405 (704)
Q Consensus 329 ~~~~~l~~~~-~p~~~~~~~~--~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (704)
.+++++|... ..+..+.+.+ +|...|.+++|+|.|++||+|+.|+++.||.-..
T Consensus 36 Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~----------------------- 92 (312)
T KOG0645|consen 36 DKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKED----------------------- 92 (312)
T ss_pred CceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCC-----------------------
Confidence 4577888776 3344444443 6888999999999999999999999999997432
Q ss_pred CCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC---ceeEEeecCCcCeeEEEEcCCCCEEEEEe
Q 005277 406 GPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN---ANLVCYKGHNYPVWDVQFNPQGHYFASSS 482 (704)
Q Consensus 406 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~---~~~~~~~~h~~~V~~v~~sp~~~~l~sgs 482 (704)
+.......+.||...|.|++|+++|.+|++|+.|++|-||.+..+ .+...+.+|+..|..+.|+|...+|+++|
T Consensus 93 ---~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~S 169 (312)
T KOG0645|consen 93 ---GEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCS 169 (312)
T ss_pred ---CceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEec
Confidence 235677889999999999999999999999999999999998744 56788899999999999999999999999
Q ss_pred CCCeEEEEECC---CCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCC
Q 005277 483 HDRTARIWSMD---RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG 559 (704)
Q Consensus 483 ~dg~i~lwd~~---~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg 559 (704)
.|++|++|+-. .-.+++.+.+|...|.+++|++.|..|++++.|++|+||-..+.- -..|+.+++.+.|. .
T Consensus 170 YDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~v~W~--~ 243 (312)
T KOG0645|consen 170 YDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL----SGMHSRALYDVPWD--N 243 (312)
T ss_pred cCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc----chhcccceEeeeec--c
Confidence 99999999876 345789999999999999999999999999999999999865331 12477899999997 4
Q ss_pred CEEEEEeCCCeEEEEeCCCC------eee-eeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccC
Q 005277 560 RYMASGDEDGTIMMWDLASG------RCV-TPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCAS 632 (704)
Q Consensus 560 ~~l~sg~~dg~I~iwdl~~~------~~~-~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 632 (704)
..|++++.|+.|+++.-..+ +.+ ..-..|...|.++.| .
T Consensus 244 ~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w----------------------------------~ 289 (312)
T KOG0645|consen 244 GVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQW----------------------------------N 289 (312)
T ss_pred cceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEE----------------------------------c
Confidence 57999999999999976542 111 123568899999999 7
Q ss_pred CC-CCEEEEEeCCCcEEEEeCC
Q 005277 633 CE-GSLLASGSADCTVKLWDVT 653 (704)
Q Consensus 633 ~~-g~~lasgs~Dg~V~iWd~~ 653 (704)
|. +++|++|+.||.|++|.+.
T Consensus 290 p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 290 PKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCCCCceeecCCCceEEEEEec
Confidence 84 7899999999999999874
No 52
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=1.6e-29 Score=248.18 Aligned_cols=260 Identities=20% Similarity=0.299 Sum_probs=220.2
Q ss_pred cCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCC
Q 005277 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (704)
Q Consensus 329 ~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (704)
.++.++|...... ..+.+.+|.+.|+|+.||.||.+||+|..+|.|+||...+...
T Consensus 85 DD~AflW~~~~ge-~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~----------------------- 140 (399)
T KOG0296|consen 85 DDLAFLWDISTGE-FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGE----------------------- 140 (399)
T ss_pred CceEEEEEccCCc-ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCce-----------------------
Confidence 3567888776655 5667899999999999999999999999999999999886322
Q ss_pred CCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEE
Q 005277 409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR 488 (704)
Q Consensus 409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~ 488 (704)
...+...-..+.-+.|+|.+..|+.|+.||.+.+|.+.++...+.+.+|+.++++=.|.|+|+.++++..||+|+
T Consensus 141 -----~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~ 215 (399)
T KOG0296|consen 141 -----QWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTII 215 (399)
T ss_pred -----EEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEE
Confidence 222223456788899999999999999999999999999888999999999999999999999999999999999
Q ss_pred EEECCCCceeEEeccC---------------------------------------------------CCCeeEEEEcC--
Q 005277 489 IWSMDRIQPLRIMAGH---------------------------------------------------LSDVDCVRWHI-- 515 (704)
Q Consensus 489 lwd~~~~~~~~~~~~~---------------------------------------------------~~~V~~v~~~p-- 515 (704)
+|+..+++++..+.+. ...+.|+.+.|
T Consensus 216 ~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~s 295 (399)
T KOG0296|consen 216 VWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSS 295 (399)
T ss_pred EEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccc
Confidence 9999988877655410 01112222222
Q ss_pred -CCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeee
Q 005277 516 -NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWT 594 (704)
Q Consensus 516 -~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~s 594 (704)
.=.+.|+|+.||+|.|||+....... ...|..+|+.+.|-+ ..+|++++.+|.|+.||.++|+++.++.||...|.+
T Consensus 296 s~lpL~A~G~vdG~i~iyD~a~~~~R~-~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~ 373 (399)
T KOG0296|consen 296 SKLPLAACGSVDGTIAIYDLAASTLRH-ICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILD 373 (399)
T ss_pred cccchhhcccccceEEEEecccchhhe-eccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeE
Confidence 22467889999999999998766554 447899999999998 789999999999999999999999999999999999
Q ss_pred eeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCC
Q 005277 595 LAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVT 653 (704)
Q Consensus 595 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~ 653 (704)
+.. +|+.++++|+|.|++.+||++.
T Consensus 374 f~l----------------------------------s~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 374 FAL----------------------------------SPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEE----------------------------------cCCCcEEEEecCCCeEEEEecC
Confidence 998 9999999999999999999874
No 53
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6.5e-30 Score=239.45 Aligned_cols=263 Identities=25% Similarity=0.432 Sum_probs=224.5
Q ss_pred CeEeecCC-CCCCeEEEEEeeCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCC
Q 005277 330 NRVHLSSA-ALPSVSFYTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP 407 (704)
Q Consensus 330 ~~~~l~~~-~~p~~~~~~~~~~~~~V~~~~fs~d-g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (704)
.++++-.. ..+.+.........+++..++||++ .+.+++++.||+++|||+..
T Consensus 38 G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~------------------------- 92 (311)
T KOG0277|consen 38 GRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTM------------------------- 92 (311)
T ss_pred ceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCC-------------------------
Confidence 35555444 3556666666778899999999997 67888999999999999653
Q ss_pred CCCccceeeccCCccCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcC-CCCEEEEEeCCC
Q 005277 408 NGRKRSYTLYQGHSGPVYSASFSPLG-DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDR 485 (704)
Q Consensus 408 ~~~~~~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg 485 (704)
...++..++.|...|+++.|++-. +.++++|.|++|++|+...++.+.++.+|...|....|+| .++.|+++|.|+
T Consensus 93 --~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~ 170 (311)
T KOG0277|consen 93 --PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDG 170 (311)
T ss_pred --CCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCc
Confidence 123667788999999999999855 4577889999999999999999999999999999999999 688999999999
Q ss_pred eEEEEECCCCceeEEeccCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCC-cEEEEeecCCCCEEEEEEecC-CCEE
Q 005277 486 TARIWSMDRIQPLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSPD-GRYM 562 (704)
Q Consensus 486 ~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~-~~~~~~~~h~~~i~~l~~spd-g~~l 562 (704)
++++||++.......+..|...+.|+.|+. +.+.++||+.|+.|+.||+++- .++..+.+|.-.|..++|||. ...|
T Consensus 171 ~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lL 250 (311)
T KOG0277|consen 171 TLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLL 250 (311)
T ss_pred eEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHh
Confidence 999999987665566888999999999986 6789999999999999999864 567788899999999999995 4689
Q ss_pred EEEeCCCeEEEEeCCCC-eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEE
Q 005277 563 ASGDEDGTIMMWDLASG-RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASG 641 (704)
Q Consensus 563 ~sg~~dg~I~iwdl~~~-~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasg 641 (704)
++++.|-+++|||...+ ..+.+...|+.-|..++|. -.++.++|++
T Consensus 251 aSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws---------------------------------~~~~~~vAs~ 297 (311)
T KOG0277|consen 251 ASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWS---------------------------------LFDPGQVAST 297 (311)
T ss_pred hhccccceEEecccccchhhhhhhhccceEEeccccc---------------------------------cccCceeeec
Confidence 99999999999998754 4566677899999999993 2257799999
Q ss_pred eCCCcEEEEeC
Q 005277 642 SADCTVKLWDV 652 (704)
Q Consensus 642 s~Dg~V~iWd~ 652 (704)
+.|+.++||+-
T Consensus 298 gWDe~l~Vw~p 308 (311)
T KOG0277|consen 298 GWDELLYVWNP 308 (311)
T ss_pred ccccceeeecc
Confidence 99999999983
No 54
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=2e-29 Score=266.81 Aligned_cols=281 Identities=20% Similarity=0.408 Sum_probs=249.5
Q ss_pred eEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCc
Q 005277 342 VSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS 421 (704)
Q Consensus 342 ~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 421 (704)
..-+++.+|+..|.++++|.|...+++|. .+.|+||+..+. ++++++. .
T Consensus 364 ~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~----------------------------kciRTi~--~ 412 (888)
T KOG0306|consen 364 TSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTL----------------------------KCIRTIT--C 412 (888)
T ss_pred cceeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCc----------------------------ceeEEec--c
Confidence 33467889999999999999998888884 678999998763 2333332 2
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCC-----Cc
Q 005277 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR-----IQ 496 (704)
Q Consensus 422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~-----~~ 496 (704)
+-+.+..|.|.++++++|...|.+.++|+.+...+..++.|.+.||+++.+|++..+++||.|.+|++||..- +.
T Consensus 413 ~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt 492 (888)
T KOG0306|consen 413 GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGT 492 (888)
T ss_pred ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcc
Confidence 3788999999999999999999999999999999999999999999999999999999999999999999741 11
Q ss_pred ee--------EEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCC
Q 005277 497 PL--------RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED 568 (704)
Q Consensus 497 ~~--------~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~d 568 (704)
.. +++ .-...|.|++++|||++|+++--|.+|++|-+.+-+..-.+.||.-||.||.+|||++.++||+.|
T Consensus 493 ~~k~lsl~~~rtL-el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSAD 571 (888)
T KOG0306|consen 493 QKKVLSLKHTRTL-ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSAD 571 (888)
T ss_pred cceeeeeccceEE-eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCC
Confidence 11 112 245789999999999999999999999999999999888889999999999999999999999999
Q ss_pred CeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEE
Q 005277 569 GTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVK 648 (704)
Q Consensus 569 g~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~ 648 (704)
.+|+||-+.-|.+-+.+.+|...|.++.| -|...+++++|.||.|+
T Consensus 572 KnVKiWGLdFGDCHKS~fAHdDSvm~V~F----------------------------------~P~~~~FFt~gKD~kvK 617 (888)
T KOG0306|consen 572 KNVKIWGLDFGDCHKSFFAHDDSVMSVQF----------------------------------LPKTHLFFTCGKDGKVK 617 (888)
T ss_pred CceEEeccccchhhhhhhcccCceeEEEE----------------------------------cccceeEEEecCcceEE
Confidence 99999999999999999999999999999 88999999999999999
Q ss_pred EEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 649 LWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 649 iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
-||-..- ..+..+++|...|+|++.+|+|.++++++.|.+
T Consensus 618 qWDg~kF---------------e~iq~L~~H~~ev~cLav~~~G~~vvs~shD~s 657 (888)
T KOG0306|consen 618 QWDGEKF---------------EEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKS 657 (888)
T ss_pred eechhhh---------------hhheeeccchheeeeeEEcCCCCeEEeccCCce
Confidence 9997663 457889999999999999999999999999864
No 55
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=2.8e-29 Score=250.96 Aligned_cols=277 Identities=22% Similarity=0.391 Sum_probs=244.6
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcC
Q 005277 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (704)
Q Consensus 352 ~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 431 (704)
.+++++...|....+++|+.|..+.++|... .+....+.||...|+++.|+|
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s----------------------------~q~l~~~~Gh~kki~~v~~~~ 271 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPS----------------------------NQILATLKGHTKKITSVKFHK 271 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecch----------------------------hhhhhhccCcceEEEEEEecc
Confidence 3577777788778899999999999999765 456778999999999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccC--CCCee
Q 005277 432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH--LSDVD 509 (704)
Q Consensus 432 ~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~--~~~V~ 509 (704)
+...+++++.|..|++|.............|..+|+.+..+|.|.||++++.||+..+.|++++..+...... .-.++
T Consensus 272 ~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~t 351 (506)
T KOG0289|consen 272 DLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYT 351 (506)
T ss_pred chhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeE
Confidence 9999999999999999999988888889999999999999999999999999999999999999887766532 24589
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCC
Q 005277 510 CVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT 589 (704)
Q Consensus 510 ~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~ 589 (704)
+.+|||||.+|.+|+.||.|++||+.++..+..|.+|.++|..++|+.+|.||+++++|+.|++||++..+...++.-..
T Consensus 352 s~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~ 431 (506)
T KOG0289|consen 352 SAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDE 431 (506)
T ss_pred EeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888777775433
Q ss_pred -ceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCcc
Q 005277 590 -SCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTN 668 (704)
Q Consensus 590 -~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~ 668 (704)
..+.++.| .+.|.+|+.+|.|=.|++++-.+ .
T Consensus 432 ~~~v~s~~f----------------------------------D~SGt~L~~~g~~l~Vy~~~k~~-------------k 464 (506)
T KOG0289|consen 432 KKEVNSLSF----------------------------------DQSGTYLGIAGSDLQVYICKKKT-------------K 464 (506)
T ss_pred cccceeEEE----------------------------------cCCCCeEEeecceeEEEEEeccc-------------c
Confidence 46888888 89999999998776666665333 2
Q ss_pred ccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 669 RLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 669 ~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
.+..+..+..|.+..+++.|....+++++++.|.+
T Consensus 465 ~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~ 499 (506)
T KOG0289|consen 465 SWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAI 499 (506)
T ss_pred cceeeehhhhcccccceeeecccceEEeeccchhh
Confidence 35678888888899999999999999999998753
No 56
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=1.5e-28 Score=269.30 Aligned_cols=259 Identities=18% Similarity=0.282 Sum_probs=204.8
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEc
Q 005277 351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (704)
Q Consensus 351 ~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 430 (704)
...|.....++|+..+++++.+.....|+...... +... .. ..........+.+|.++|++++|+
T Consensus 20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~--v~~~--~~-----------~G~~~~~~~~l~GH~~~V~~v~fs 84 (493)
T PTZ00421 20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTA--VLKH--TD-----------YGKLASNPPILLGQEGPIIDVAFN 84 (493)
T ss_pred eeccccccccCCCCCcEeECCceEEEEEecCCceE--Eeec--cc-----------cccCCCCCceEeCCCCCEEEEEEc
Confidence 34567777888877788888888888898654221 1000 00 000011223467999999999999
Q ss_pred C-CCCEEEEEeCCCeEEEEeCCCC-------ceeEEeecCCcCeeEEEEcCCC-CEEEEEeCCCeEEEEECCCCceeEEe
Q 005277 431 P-LGDFILSSSADTTIRLWSTKLN-------ANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRIQPLRIM 501 (704)
Q Consensus 431 p-~~~~l~s~s~Dg~I~lwd~~~~-------~~~~~~~~h~~~V~~v~~sp~~-~~l~sgs~dg~i~lwd~~~~~~~~~~ 501 (704)
| ++++|++|+.||+|++||+.++ ..+..+.+|...|.+++|+|++ ++|++|+.|++|++||+++++.+..+
T Consensus 85 P~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l 164 (493)
T PTZ00421 85 PFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVI 164 (493)
T ss_pred CCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEE
Confidence 9 7889999999999999999765 3467788999999999999975 79999999999999999999999999
Q ss_pred ccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCC-EEEEEEecCCCEEEEEe----CCCeEEEEeC
Q 005277 502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM-ILSLAMSPDGRYMASGD----EDGTIMMWDL 576 (704)
Q Consensus 502 ~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~-i~~l~~spdg~~l~sg~----~dg~I~iwdl 576 (704)
.+|...|.+++|+|++++|++|+.|++|++||+++++.+..+.+|.+. +..+.|.+++..+++++ .|+.|++||+
T Consensus 165 ~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDl 244 (493)
T PTZ00421 165 KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDT 244 (493)
T ss_pred cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeC
Confidence 999999999999999999999999999999999999999999888764 45778999888777654 4789999999
Q ss_pred CCCe-eeeeecCCC-ceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEe-CCCcEEEEeCC
Q 005277 577 ASGR-CVTPLMGHT-SCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGS-ADCTVKLWDVT 653 (704)
Q Consensus 577 ~~~~-~~~~~~~h~-~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs-~Dg~V~iWd~~ 653 (704)
++.. ++.....+. ..+....| ++++++|++|+ .||.|++||+.
T Consensus 245 r~~~~p~~~~~~d~~~~~~~~~~----------------------------------d~d~~~L~lggkgDg~Iriwdl~ 290 (493)
T PTZ00421 245 RKMASPYSTVDLDQSSALFIPFF----------------------------------DEDTNLLYIGSKGEGNIRCFELM 290 (493)
T ss_pred CCCCCceeEeccCCCCceEEEEE----------------------------------cCCCCEEEEEEeCCCeEEEEEee
Confidence 8754 333333232 23333444 88999998887 59999999999
Q ss_pred CCccc
Q 005277 654 TSTKV 658 (704)
Q Consensus 654 ~~~~~ 658 (704)
++...
T Consensus 291 ~~~~~ 295 (493)
T PTZ00421 291 NERLT 295 (493)
T ss_pred CCceE
Confidence 87643
No 57
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=5.4e-29 Score=251.14 Aligned_cols=300 Identities=23% Similarity=0.397 Sum_probs=242.8
Q ss_pred eEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCc
Q 005277 342 VSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS 421 (704)
Q Consensus 342 ~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 421 (704)
..+.....|+-+|+|++++||.++..+++.+|+|.-|++.+.....- ..+................ .+|.
T Consensus 133 ~~~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~---------i~~~~ev~k~~~~~~k~~r-~~h~ 202 (479)
T KOG0299|consen 133 SDFRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRY---------IIERDEVLKSHGNPLKESR-KGHV 202 (479)
T ss_pred ccceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCccccc---------ccccchhhhhccCCCCccc-cccc
Confidence 33566778999999999999999999999999999999876432100 0000000000000111111 4899
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe
Q 005277 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM 501 (704)
Q Consensus 422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~ 501 (704)
..|.+++.++||+||++|+.|..|.||+.++.+.+..+++|.+.|.+++|-...+.+++++.|+++++|+++....+.++
T Consensus 203 keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetl 282 (479)
T KOG0299|consen 203 KEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETL 282 (479)
T ss_pred ceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988889999999999999999999999999
Q ss_pred ccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCee
Q 005277 502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC 581 (704)
Q Consensus 502 ~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~ 581 (704)
.+|.+.|..+.-..-++.+.+|+.|+++++|++. ......|.+|.+.+-|++|- +...+++|+.+|.|.+|++.+.++
T Consensus 283 yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~KKkp 360 (479)
T KOG0299|consen 283 YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFI-NDEHFVSGSDNGSIALWSLLKKKP 360 (479)
T ss_pred hCCccceeeechhcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEe-cccceeeccCCceEEEeeecccCc
Confidence 9999999999988888888899999999999994 34445688999999999998 456789999999999999999988
Q ss_pred eeeec-CCC---c--------eeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEE
Q 005277 582 VTPLM-GHT---S--------CVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKL 649 (704)
Q Consensus 582 ~~~~~-~h~---~--------~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~i 649 (704)
+.+.. +|. . .|++++. .|..+++|+|+.+|.|++
T Consensus 361 lf~~~~AHgv~~~~~~~~~~~Witsla~----------------------------------i~~sdL~asGS~~G~vrL 406 (479)
T KOG0299|consen 361 LFTSRLAHGVIPELDPVNGNFWITSLAV----------------------------------IPGSDLLASGSWSGCVRL 406 (479)
T ss_pred eeEeeccccccCCccccccccceeeeEe----------------------------------cccCceEEecCCCCceEE
Confidence 87764 332 0 2333333 788899999999999999
Q ss_pred EeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEee
Q 005277 650 WDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 699 (704)
Q Consensus 650 Wd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs 699 (704)
|.+..+-. .+.++..++ ..+-|++++|+++|..+++|.
T Consensus 407 W~i~~g~r-----------~i~~l~~ls-~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 407 WKIEDGLR-----------AINLLYSLS-LVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred EEecCCcc-----------ccceeeecc-cccEEEEEEEccCCCEEEEec
Confidence 99988743 234556665 678899999999999777764
No 58
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=8.8e-29 Score=233.41 Aligned_cols=291 Identities=19% Similarity=0.259 Sum_probs=240.6
Q ss_pred EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (704)
Q Consensus 346 ~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (704)
.+.+|..+++-+.++.+|.+|.+++.|.++.||-... +...-.+.||++.|.
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~n----------------------------GerlGty~GHtGavW 56 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLN----------------------------GERLGTYDGHTGAVW 56 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecC----------------------------CceeeeecCCCceEE
Confidence 3678999999999999999999999999999997533 345667899999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEe-----CCCeEEEEECC-------
Q 005277 426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-----HDRTARIWSMD------- 493 (704)
Q Consensus 426 ~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs-----~dg~i~lwd~~------- 493 (704)
|+...-+.+++++|+.|.++++||+.+|+++..++ ...+|+.+.|+++|++++.+. ..+.|.++|++
T Consensus 57 ~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~ 135 (327)
T KOG0643|consen 57 CCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDID 135 (327)
T ss_pred EEEecCCcceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhc
Confidence 99999999999999999999999999999999988 567999999999999888775 45789999998
Q ss_pred CCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCc-EEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEE
Q 005277 494 RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE-CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM 572 (704)
Q Consensus 494 ~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~-~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~ 572 (704)
..+|...+..+.+.++.+-|.|-+.+|++|..||.|.+||+++|. .+..-..|...|+.|+++||..++++++.|.+-+
T Consensus 136 s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttak 215 (327)
T KOG0643|consen 136 SEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAK 215 (327)
T ss_pred ccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccce
Confidence 456778888888999999999999999999999999999999984 4555578999999999999999999999999999
Q ss_pred EEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeC
Q 005277 573 MWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDV 652 (704)
Q Consensus 573 iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~ 652 (704)
+||..+-..++++. -..+|.+.++ +|-...++.||.....-|=-.
T Consensus 216 l~D~~tl~v~Kty~-te~PvN~aai----------------------------------sP~~d~VilgGGqeA~dVTTT 260 (327)
T KOG0643|consen 216 LVDVRTLEVLKTYT-TERPVNTAAI----------------------------------SPLLDHVILGGGQEAMDVTTT 260 (327)
T ss_pred eeeccceeeEEEee-ecccccceec----------------------------------ccccceEEecCCceeeeeeee
Confidence 99999998888876 3457777777 888888877765432222111
Q ss_pred --CCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 653 --TTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 653 --~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
+.++-...+.+ ...-..+..+.+|-+||++|+|+|+|+..++|+.||.
T Consensus 261 ~~r~GKFEArFyh---~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~ 310 (327)
T KOG0643|consen 261 STRAGKFEARFYH---LIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGY 310 (327)
T ss_pred cccccchhhhHHH---HHHHHHhccccccccCcceeEECCCCcccccCCCCce
Confidence 11111000000 0011346778999999999999999999999999984
No 59
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=4.2e-30 Score=239.88 Aligned_cols=279 Identities=23% Similarity=0.356 Sum_probs=240.9
Q ss_pred EEEeeCCCCEEEEEEcC---CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCc
Q 005277 345 YTFINTHNGLNCASISQ---DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS 421 (704)
Q Consensus 345 ~~~~~~~~~V~~~~fs~---dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 421 (704)
.+..+|..+|..++||| +|-+|++++.||.-.+-+=+ ....+-.+.||.
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~----------------------------tgdwigtfeghk 59 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGD----------------------------TGDWIGTFEGHK 59 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCC----------------------------CCCcEEeeeccC
Confidence 35689999999999985 89999999998865443322 245667889999
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCc-eeEE
Q 005277 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ-PLRI 500 (704)
Q Consensus 422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~-~~~~ 500 (704)
+.|.+.....+...-++++.|-+-++||.-++..+..+. |..-|..++|+.|.+++++|+.+..+|+||++..+ +...
T Consensus 60 gavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E 138 (334)
T KOG0278|consen 60 GAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKE 138 (334)
T ss_pred cceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchh
Confidence 999999999888888899999999999999999999887 88899999999999999999999999999998754 5677
Q ss_pred eccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCe
Q 005277 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR 580 (704)
Q Consensus 501 ~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~ 580 (704)
+.+|.+.|..+.|....+.|++.+.|++||+||.+++..+..+. ...+|+++.++++|++|.++. .+.|.+||..+..
T Consensus 139 ~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~ 216 (334)
T KOG0278|consen 139 ISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFG 216 (334)
T ss_pred hcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEec-CceeEEecccccc
Confidence 88999999999999999999999999999999999999998885 567899999999999887654 5679999999988
Q ss_pred eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccc
Q 005277 581 CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLK 660 (704)
Q Consensus 581 ~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~ 660 (704)
+++.+... ..|.+.+. +|+..++++|+.|+.++.||+.++..+..
T Consensus 217 ~lKs~k~P-~nV~SASL----------------------------------~P~k~~fVaGged~~~~kfDy~TgeEi~~ 261 (334)
T KOG0278|consen 217 LLKSYKMP-CNVESASL----------------------------------HPKKEFFVAGGEDFKVYKFDYNTGEEIGS 261 (334)
T ss_pred ceeeccCc-cccccccc----------------------------------cCCCceEEecCcceEEEEEeccCCceeee
Confidence 88776532 34555555 89999999999999999999999875311
Q ss_pred cccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 661 TEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 661 ~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
...+|.+||.||.|+|+|.+.|+||.|||
T Consensus 262 --------------~nkgh~gpVhcVrFSPdGE~yAsGSEDGT 290 (334)
T KOG0278|consen 262 --------------YNKGHFGPVHCVRFSPDGELYASGSEDGT 290 (334)
T ss_pred --------------cccCCCCceEEEEECCCCceeeccCCCce
Confidence 24789999999999999999999999997
No 60
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=3.5e-29 Score=240.21 Aligned_cols=303 Identities=22% Similarity=0.363 Sum_probs=240.0
Q ss_pred CeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccC-CCCCccceeeccC
Q 005277 341 SVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG-PNGRKRSYTLYQG 419 (704)
Q Consensus 341 ~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 419 (704)
...-..+..|.+.+.|.+||+||.++|+|+.|..|+|.|+..+-..... .+...+ .......++.+..
T Consensus 102 ~yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~-----------~em~~~~~qa~hPvIRTlYD 170 (430)
T KOG0640|consen 102 EYETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKP-----------KEMISGDTQARHPVIRTLYD 170 (430)
T ss_pred ccceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcch-----------hhhccCCcccCCceEeehhh
Confidence 3444457789999999999999999999999999999998742111100 000001 1122467889999
Q ss_pred CccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee--cCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 005277 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK--GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP 497 (704)
Q Consensus 420 h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~--~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~ 497 (704)
|..+|+++.|+|....|++|+.|++|+++|.......+.++ ....+|.++.|+|.|.++++|..-.++++||+++.++
T Consensus 171 H~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qc 250 (430)
T KOG0640|consen 171 HVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQC 250 (430)
T ss_pred ccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeE
Confidence 99999999999999999999999999999997544333222 2467899999999999999999999999999998776
Q ss_pred eEEe---ccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEee-cCC-CCEEEEEEecCCCEEEEEeCCCeEE
Q 005277 498 LRIM---AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GHR-SMILSLAMSPDGRYMASGDEDGTIM 572 (704)
Q Consensus 498 ~~~~---~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~-~~i~~l~~spdg~~l~sg~~dg~I~ 572 (704)
...- .+|.+.|+++.+++.+++.++|+.||.|++||--+++|++++. .|. ..|.+..|+.+|+++.+.|.|..++
T Consensus 251 fvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vk 330 (430)
T KOG0640|consen 251 FVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVK 330 (430)
T ss_pred eeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceee
Confidence 5443 3688999999999999999999999999999999999999885 454 4799999999999999999999999
Q ss_pred EEeCCCCeeeeeecCCC--ce---eeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEe-CCCc
Q 005277 573 MWDLASGRCVTPLMGHT--SC---VWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGS-ADCT 646 (704)
Q Consensus 573 iwdl~~~~~~~~~~~h~--~~---V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs-~Dg~ 646 (704)
+|.+.+++++..+.|-. +. -+...| +....+++.-. ..+.
T Consensus 331 LWEi~t~R~l~~YtGAg~tgrq~~rtqAvF----------------------------------NhtEdyVl~pDEas~s 376 (430)
T KOG0640|consen 331 LWEISTGRMLKEYTGAGTTGRQKHRTQAVF----------------------------------NHTEDYVLFPDEASNS 376 (430)
T ss_pred eeeecCCceEEEEecCCcccchhhhhhhhh----------------------------------cCccceEEccccccCc
Confidence 99999999999887642 11 111122 44444554443 4678
Q ss_pred EEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277 647 VKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 702 (704)
Q Consensus 647 V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg 702 (704)
+.-||..+..... ..--+|++++..+.-||.+..+.+|+.|-
T Consensus 377 lcsWdaRtadr~~--------------l~slgHn~a~R~i~HSP~~p~FmTcsdD~ 418 (430)
T KOG0640|consen 377 LCSWDARTADRVA--------------LLSLGHNGAVRWIVHSPVEPAFMTCSDDF 418 (430)
T ss_pred eeeccccchhhhh--------------hcccCCCCCceEEEeCCCCCceeeecccc
Confidence 9999999876531 12237899999999999999999999874
No 61
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=2.8e-30 Score=256.85 Aligned_cols=290 Identities=23% Similarity=0.326 Sum_probs=245.4
Q ss_pred CCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceee
Q 005277 337 AALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL 416 (704)
Q Consensus 337 ~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (704)
..+|+.+.+.+.-|.+.+..+.|-++...|++|+.|..|++|++...+ ......
T Consensus 161 ~~lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k--------------------------~~~~~t 214 (459)
T KOG0288|consen 161 DTLPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK--------------------------SELIST 214 (459)
T ss_pred cccchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccch--------------------------hhhhhh
Confidence 467888888888999999999999999999999999999999987522 224456
Q ss_pred ccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 005277 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ 496 (704)
Q Consensus 417 ~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~ 496 (704)
+.|..++|+++.|.+++.++++++.|+.+++|+++..+...++.+|...|+++.|......+++|+.|.++++||+....
T Consensus 215 LaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~ 294 (459)
T KOG0288|consen 215 LAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAY 294 (459)
T ss_pred hhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhh
Confidence 77888999999999999999999999999999999999999999999999999999877779999999999999999987
Q ss_pred eeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 005277 497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576 (704)
Q Consensus 497 ~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl 576 (704)
+.+.+. ..+.+..|... ...+++|-.|++||+||+++..+++....+. .|+++..+++|..|.+++.|.++.+.|+
T Consensus 295 C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDl 370 (459)
T KOG0288|consen 295 CSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDL 370 (459)
T ss_pred eecccc-ccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeec
Confidence 777655 23455556554 5678899999999999999999999887665 8999999999999999999999999999
Q ss_pred CCCeeeeeecCCC----ceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeC
Q 005277 577 ASGRCVTPLMGHT----SCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDV 652 (704)
Q Consensus 577 ~~~~~~~~~~~h~----~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~ 652 (704)
++......+.+.. ...+.+.| ||++.|+++||.||.|+||++
T Consensus 371 Rt~eI~~~~sA~g~k~asDwtrvvf----------------------------------Spd~~YvaAGS~dgsv~iW~v 416 (459)
T KOG0288|consen 371 RTKEIRQTFSAEGFKCASDWTRVVF----------------------------------SPDGSYVAAGSADGSVYIWSV 416 (459)
T ss_pred ccccEEEEeeccccccccccceeEE----------------------------------CCCCceeeeccCCCcEEEEEc
Confidence 9988877775422 12333444 999999999999999999999
Q ss_pred CCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 653 TTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
.+++... +...++....|+++.|+|.|..|++++.++.
T Consensus 417 ~tgKlE~-------------~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~ 454 (459)
T KOG0288|consen 417 FTGKLEK-------------VLSLSTSNAAITSLSWNPSGSGLLSADKQKA 454 (459)
T ss_pred cCceEEE-------------EeccCCCCcceEEEEEcCCCchhhcccCCcc
Confidence 9986532 2233333446999999999999999887764
No 62
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.7e-28 Score=234.20 Aligned_cols=275 Identities=23% Similarity=0.355 Sum_probs=229.4
Q ss_pred EeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEE
Q 005277 347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (704)
Q Consensus 347 ~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 426 (704)
|....+.|+++.|+++|.+|++++.|-+++|||... .........+.-.|..
T Consensus 10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~----------------------------g~~~~ti~skkyG~~~ 61 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLS----------------------------GKQVKTINSKKYGVDL 61 (311)
T ss_pred cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCC----------------------------CceeeEeecccccccE
Confidence 344678899999999999999999999999999876 2344455556667888
Q ss_pred EEEcCCCCEEEEEeC--CCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccC
Q 005277 427 ASFSPLGDFILSSSA--DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH 504 (704)
Q Consensus 427 l~~sp~~~~l~s~s~--Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~ 504 (704)
++|......++.++. |.+||..++.+.+.++.+.||...|.+++.+|-+..|++++.|++|++||++..++...+...
T Consensus 62 ~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~ 141 (311)
T KOG1446|consen 62 ACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS 141 (311)
T ss_pred EEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC
Confidence 889777777776665 889999999999999999999999999999999999999999999999999987777666533
Q ss_pred CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC--cEEEEee---cCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCC
Q 005277 505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG--ECVRIFI---GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579 (704)
Q Consensus 505 ~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~--~~~~~~~---~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~ 579 (704)
.-..++|.|.|-++|++.....|++||+|.- .+..+|. +.....+.|.|||||++|+.+...+.+++.|.-+|
T Consensus 142 --~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G 219 (311)
T KOG1446|consen 142 --GRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG 219 (311)
T ss_pred --CCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC
Confidence 3345789999999999988889999999853 3444443 33567899999999999999999999999999999
Q ss_pred eeeeeecCCCcee---eeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCc
Q 005277 580 RCVTPLMGHTSCV---WTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTST 656 (704)
Q Consensus 580 ~~~~~~~~h~~~V---~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~ 656 (704)
..+.++.++...- -+..| +||++++++|+.||+|++|+++++.
T Consensus 220 ~~~~tfs~~~~~~~~~~~a~f----------------------------------tPds~Fvl~gs~dg~i~vw~~~tg~ 265 (311)
T KOG1446|consen 220 TVKSTFSGYPNAGNLPLSATF----------------------------------TPDSKFVLSGSDDGTIHVWNLETGK 265 (311)
T ss_pred cEeeeEeeccCCCCcceeEEE----------------------------------CCCCcEEEEecCCCcEEEEEcCCCc
Confidence 9888887765322 22333 9999999999999999999999887
Q ss_pred cccccccccCccccccccccCC-CCcCeEEEEEccCCcEEEEeec
Q 005277 657 KVLKTEEKSGTNRLRSLKTLPT-KSTPVYSLQFSRRNLLFAAGAL 700 (704)
Q Consensus 657 ~~~~~~~~~~~~~~~~l~~~~~-~~~~V~~l~fs~~g~~La~gs~ 700 (704)
++ ..+.+ +.+++.++.|+|.-..+|+++.
T Consensus 266 ~v---------------~~~~~~~~~~~~~~~fnP~~~mf~sa~s 295 (311)
T KOG1446|consen 266 KV---------------AVLRGPNGGPVSCVRFNPRYAMFVSASS 295 (311)
T ss_pred Ee---------------eEecCCCCCCccccccCCceeeeeecCc
Confidence 64 23333 6789999999999999998875
No 63
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=5.4e-29 Score=253.03 Aligned_cols=275 Identities=24% Similarity=0.370 Sum_probs=229.1
Q ss_pred eeCCCCEEEEEEcCCCCE-EEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEE
Q 005277 348 INTHNGLNCASISQDGSL-VAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (704)
Q Consensus 348 ~~~~~~V~~~~fs~dg~~-lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 426 (704)
..-++.|++++|||...+ +|+. ..-.|.||+..+. .....+......|++
T Consensus 23 ~ke~~~vssl~fsp~~P~d~aVt-~S~rvqly~~~~~----------------------------~~~k~~srFk~~v~s 73 (487)
T KOG0310|consen 23 HKEHNSVSSLCFSPKHPYDFAVT-SSVRVQLYSSVTR----------------------------SVRKTFSRFKDVVYS 73 (487)
T ss_pred ccccCcceeEecCCCCCCceEEe-cccEEEEEecchh----------------------------hhhhhHHhhccceeE
Confidence 455678999999996433 3433 3567899987652 122333445678999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeEEeccCC
Q 005277 427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPLRIMAGHL 505 (704)
Q Consensus 427 l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~ 505 (704)
+.|-.||++|++|...|.|+++|+.+...+..+.+|..||..+.|+| ++..|++|+.|+.+++||+.+......+.+|.
T Consensus 74 ~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~ht 153 (487)
T KOG0310|consen 74 VDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHT 153 (487)
T ss_pred EEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCc
Confidence 99999999999999999999999877677888999999999999999 56678899999999999999988766788999
Q ss_pred CCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCC-cEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCC-eee
Q 005277 506 SDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG-RCV 582 (704)
Q Consensus 506 ~~V~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~-~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~-~~~ 582 (704)
+.|.|.+|+|- +.++++|+.||+|++||+++. ..+..+ .|..+|..+.+-|.|..+++++.. .|++||+.+| +.+
T Consensus 154 DYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll 231 (487)
T KOG0310|consen 154 DYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLL 231 (487)
T ss_pred ceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceeh
Confidence 99999999995 568899999999999999987 555555 699999999999999999998764 7999999965 455
Q ss_pred eeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccc
Q 005277 583 TPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTE 662 (704)
Q Consensus 583 ~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~ 662 (704)
..+..|...|+|+.+ ..++..|++||-||.|++||+.+-+.+
T Consensus 232 ~~~~~H~KtVTcL~l----------------------------------~s~~~rLlS~sLD~~VKVfd~t~~Kvv---- 273 (487)
T KOG0310|consen 232 TSMFNHNKTVTCLRL----------------------------------ASDSTRLLSGSLDRHVKVFDTTNYKVV---- 273 (487)
T ss_pred hhhhcccceEEEEEe----------------------------------ecCCceEeecccccceEEEEccceEEE----
Confidence 555569999999999 778899999999999999997765432
Q ss_pred cccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 663 EKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 663 ~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
..+ ...+||.+++.+|++..++.|..+|.
T Consensus 274 -----------~s~-~~~~pvLsiavs~dd~t~viGmsnGl 302 (487)
T KOG0310|consen 274 -----------HSW-KYPGPVLSIAVSPDDQTVVIGMSNGL 302 (487)
T ss_pred -----------Eee-ecccceeeEEecCCCceEEEecccce
Confidence 222 45789999999999999999999884
No 64
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.3e-28 Score=264.35 Aligned_cols=239 Identities=25% Similarity=0.430 Sum_probs=211.5
Q ss_pred CeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCC
Q 005277 330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG 409 (704)
Q Consensus 330 ~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (704)
..+++|+-... .+.-.|..|.++|..++|+|.+.++++|+.|-.|+||+.+.
T Consensus 31 G~IQlWDYRM~-tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~--------------------------- 82 (1202)
T KOG0292|consen 31 GVIQLWDYRMG-TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT--------------------------- 82 (1202)
T ss_pred ceeeeehhhhh-hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc---------------------------
Confidence 45666654332 23345789999999999999999999999999999999876
Q ss_pred CccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEE
Q 005277 410 RKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARI 489 (704)
Q Consensus 410 ~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~l 489 (704)
.++..++.||-.-|..+.|++.-.+++|+|.|.||+||++.+.+++..+.||+..|.|.+|+|....++++|-|.+||+
T Consensus 83 -rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRV 161 (1202)
T KOG0292|consen 83 -RRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRV 161 (1202)
T ss_pred -ceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEE
Confidence 5677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCc-----------------------------eeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCc--
Q 005277 490 WSMDRIQ-----------------------------PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE-- 538 (704)
Q Consensus 490 wd~~~~~-----------------------------~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~-- 538 (704)
||+...+ ....+.||...|+-++|||.-..|++|+.|+.|++|.+..-+
T Consensus 162 WDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaW 241 (1202)
T KOG0292|consen 162 WDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW 241 (1202)
T ss_pred EeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccce
Confidence 9985210 113467999999999999999999999999999999987544
Q ss_pred EEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeee
Q 005277 539 CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY 597 (704)
Q Consensus 539 ~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~ 597 (704)
.+-++.+|.+.|+++-|+|....+++.|+|++|+|||+...+.+.+++.-.+..|.++.
T Consensus 242 EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laa 300 (1202)
T KOG0292|consen 242 EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAA 300 (1202)
T ss_pred eehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEe
Confidence 35567899999999999999999999999999999999999999999877788888877
No 65
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=1.1e-27 Score=263.54 Aligned_cols=247 Identities=19% Similarity=0.331 Sum_probs=194.4
Q ss_pred EeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCC-CCEEEEEeCCCeEEE
Q 005277 369 GFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL-GDFILSSSADTTIRL 447 (704)
Q Consensus 369 g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-~~~l~s~s~Dg~I~l 447 (704)
|+.+|.|++|+... ......+.+|.++|.+++|+|+ +.+|++|+.||+|++
T Consensus 50 GG~~gvI~L~~~~r----------------------------~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrI 101 (568)
T PTZ00420 50 GGLIGAIRLENQMR----------------------------KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRV 101 (568)
T ss_pred CCceeEEEeeecCC----------------------------CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEE
Confidence 66788899998653 2345667899999999999997 789999999999999
Q ss_pred EeCCCCc--------eeEEeecCCcCeeEEEEcCCCCE-EEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCC
Q 005277 448 WSTKLNA--------NLVCYKGHNYPVWDVQFNPQGHY-FASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCN 518 (704)
Q Consensus 448 wd~~~~~--------~~~~~~~h~~~V~~v~~sp~~~~-l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~ 518 (704)
||+.++. .+..+.+|...|.+++|+|++.. +++++.|++|++||+++++.+..+. |...|.+++|+|+|.
T Consensus 102 WDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~ 180 (568)
T PTZ00420 102 WEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGN 180 (568)
T ss_pred EECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCC
Confidence 9997642 34467889999999999998876 5789999999999999988777665 567899999999999
Q ss_pred EEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEE-----EEecCCCEEEEEeCCC----eEEEEeCCC-CeeeeeecCC
Q 005277 519 YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSL-----AMSPDGRYMASGDEDG----TIMMWDLAS-GRCVTPLMGH 588 (704)
Q Consensus 519 ~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l-----~~spdg~~l~sg~~dg----~I~iwdl~~-~~~~~~~~~h 588 (704)
+|++++.|+.|++||+++++.+..+.+|.+.+.+. .|++++.+|++++.|+ .|+|||+++ ++++..+..+
T Consensus 181 lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld 260 (568)
T PTZ00420 181 LLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSID 260 (568)
T ss_pred EEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEec
Confidence 99999999999999999999999999998865443 3458889999988774 799999995 5555544322
Q ss_pred --CceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccC
Q 005277 589 --TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSG 666 (704)
Q Consensus 589 --~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~ 666 (704)
.+.+..... .++|.++++|+.|++|++|++..+..
T Consensus 261 ~~~~~L~p~~D----------------------------------~~tg~l~lsGkGD~tIr~~e~~~~~~--------- 297 (568)
T PTZ00420 261 NASAPLIPHYD----------------------------------ESTGLIYLIGKGDGNCRYYQHSLGSI--------- 297 (568)
T ss_pred CCccceEEeee----------------------------------CCCCCEEEEEECCCeEEEEEccCCcE---------
Confidence 222222222 56688999999999999999976531
Q ss_pred ccccccccccCCCCcCeEEEEEccCC
Q 005277 667 TNRLRSLKTLPTKSTPVYSLQFSRRN 692 (704)
Q Consensus 667 ~~~~~~l~~~~~~~~~V~~l~fs~~g 692 (704)
..+..+. +..|+.+++|.|..
T Consensus 298 ----~~l~~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 298 ----RKVNEYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred ----Eeecccc-cCCCccceEEcccc
Confidence 1233332 55677777777754
No 66
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=1.7e-28 Score=235.34 Aligned_cols=262 Identities=24% Similarity=0.409 Sum_probs=234.2
Q ss_pred hccCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccC
Q 005277 327 DLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG 406 (704)
Q Consensus 327 ~~~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (704)
.....+.+|.....--.+.++.+|.+.|..+.|.+|++.|++++.|.+|+.||+.+
T Consensus 66 G~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t------------------------ 121 (338)
T KOG0265|consen 66 GSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET------------------------ 121 (338)
T ss_pred CCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc------------------------
Confidence 34567888887666666778889999999999999999999999999999999987
Q ss_pred CCCCccceeeccCCccCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCC
Q 005277 407 PNGRKRSYTLYQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR 485 (704)
Q Consensus 407 ~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg 485 (704)
++..+.+++|.+-|+++.-+.-|. ++.|++.||++++||+++..+++++. ...+++++.|...+..+.+|+-|+
T Consensus 122 ----G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn 196 (338)
T KOG0265|consen 122 ----GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDN 196 (338)
T ss_pred ----ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccC
Confidence 456677889999999999655555 45589999999999999888888775 467899999999999999999999
Q ss_pred eEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC----CcEEEEeecCCC----CEEEEEEec
Q 005277 486 TARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS----GECVRIFIGHRS----MILSLAMSP 557 (704)
Q Consensus 486 ~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~----~~~~~~~~~h~~----~i~~l~~sp 557 (704)
.|++||++......++.||.+.|+.+..+|+|.++.+-+.|.++++||++. .+++..+.+|.. ....++|+|
T Consensus 197 ~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp 276 (338)
T KOG0265|consen 197 DIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSP 276 (338)
T ss_pred ceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccC
Confidence 999999999999999999999999999999999999999999999999984 456888887653 456789999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCE
Q 005277 558 DGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSL 637 (704)
Q Consensus 558 dg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 637 (704)
++..+.+|+.|..+++||..+...+..+.||.+.|.+++| +|...+
T Consensus 277 ~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~F----------------------------------hp~e~i 322 (338)
T KOG0265|consen 277 NGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDF----------------------------------HPTEPI 322 (338)
T ss_pred CCCccccccccceEEEeecccccEEEEcCCcceeEEEeee----------------------------------cCCCcE
Confidence 9999999999999999999988999999999999999999 999999
Q ss_pred EEEEeCCCcEEEEe
Q 005277 638 LASGSADCTVKLWD 651 (704)
Q Consensus 638 lasgs~Dg~V~iWd 651 (704)
|.+++.|.+|.+=.
T Consensus 323 ils~~sdk~i~lge 336 (338)
T KOG0265|consen 323 ILSCSSDKTIYLGE 336 (338)
T ss_pred EEEeccCceeEeec
Confidence 99999999998743
No 67
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=2.3e-28 Score=268.00 Aligned_cols=266 Identities=29% Similarity=0.523 Sum_probs=234.1
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceee-ccCCccCeEEEE
Q 005277 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL-YQGHSGPVYSAS 428 (704)
Q Consensus 350 ~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~V~~l~ 428 (704)
+...+.|..|. ..++++|+.|++|++|+... ...+.. +.||.+.|.+++
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~----------------------------~~~i~~~l~GH~g~V~~l~ 256 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNN----------------------------GYLILTRLVGHFGGVWGLA 256 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeeccc----------------------------ceEEEeeccCCCCCceeEE
Confidence 56679999998 56799999999999999765 234444 899999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCe
Q 005277 429 FSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDV 508 (704)
Q Consensus 429 ~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V 508 (704)
+..-+.+|++|+.|.++++||..++.+...+.+|...|.++... +.++++|+.|.+|++|++.++..+..+.+|..+|
T Consensus 257 ~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V 334 (537)
T KOG0274|consen 257 FPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPV 334 (537)
T ss_pred EecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccE
Confidence 99878899999999999999999999999999999999998874 5678889999999999999999999999999999
Q ss_pred eEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCC-eeeeeecC
Q 005277 509 DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG-RCVTPLMG 587 (704)
Q Consensus 509 ~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~-~~~~~~~~ 587 (704)
.++..+ +.++++|+.|++|++||+.+++++..+.+|...|.++.+.+. ..+++|+.|+.|++||+++. +++.++.+
T Consensus 335 ~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~ 411 (537)
T KOG0274|consen 335 NCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQG 411 (537)
T ss_pred EEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcC
Confidence 999987 889999999999999999999999999999999999988654 89999999999999999999 99999999
Q ss_pred CCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCc
Q 005277 588 HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGT 667 (704)
Q Consensus 588 h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~ 667 (704)
|...+..+.+ .+++|++++.||+|++||...++..
T Consensus 412 h~~~v~~l~~------------------------------------~~~~Lvs~~aD~~Ik~WD~~~~~~~--------- 446 (537)
T KOG0274|consen 412 HTSLVSSLLL------------------------------------RDNFLVSSSADGTIKLWDAEEGECL--------- 446 (537)
T ss_pred Cccccccccc------------------------------------ccceeEeccccccEEEeecccCcee---------
Confidence 9998876644 6789999999999999999988653
Q ss_pred cccccccccCC-CCcCeEEEEEccCCcEEEEeecCCC
Q 005277 668 NRLRSLKTLPT-KSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 668 ~~~~~l~~~~~-~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
..+.+ +...|..+++. ...+++++.+|+
T Consensus 447 ------~~~~~~~~~~v~~l~~~--~~~il~s~~~~~ 475 (537)
T KOG0274|consen 447 ------RTLEGRHVGGVSALALG--KEEILCSSDDGS 475 (537)
T ss_pred ------eeeccCCcccEEEeecC--cceEEEEecCCe
Confidence 34444 56778888776 445666666654
No 68
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=8.9e-28 Score=283.29 Aligned_cols=240 Identities=23% Similarity=0.378 Sum_probs=207.2
Q ss_pred eCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEE
Q 005277 349 NTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA 427 (704)
Q Consensus 349 ~~~~~V~~~~fs~d-g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 427 (704)
.+...|.+++|++. +.+||+|+.||.|+|||+.+ ......+.+|.+.|+++
T Consensus 530 ~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~----------------------------~~~~~~~~~H~~~V~~l 581 (793)
T PLN00181 530 ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR----------------------------SQLVTEMKEHEKRVWSI 581 (793)
T ss_pred cccCceeeEEeccCCCCEEEEEeCCCeEEEEECCC----------------------------CeEEEEecCCCCCEEEE
Confidence 34568999999874 88999999999999999875 23456678899999999
Q ss_pred EEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEc-CCCCEEEEEeCCCeEEEEECCCCc-eeEEeccC
Q 005277 428 SFSP-LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN-PQGHYFASSSHDRTARIWSMDRIQ-PLRIMAGH 504 (704)
Q Consensus 428 ~~sp-~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~s-p~~~~l~sgs~dg~i~lwd~~~~~-~~~~~~~~ 504 (704)
+|+| ++.+|++|+.||+|++||+.++..+..+..+ ..|.++.|+ +++.+|++|+.||.|++||+++.. ++..+.+|
T Consensus 582 ~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h 660 (793)
T PLN00181 582 DYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGH 660 (793)
T ss_pred EEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCC
Confidence 9997 7889999999999999999999888888755 689999995 479999999999999999998765 56778899
Q ss_pred CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC------CcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 005277 505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSS------GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578 (704)
Q Consensus 505 ~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~------~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~ 578 (704)
...|.++.|. ++.+|++++.|++|++||++. ..++..+.+|...+.+++|+|++.+|++|+.||.|++|+...
T Consensus 661 ~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~ 739 (793)
T PLN00181 661 SKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAF 739 (793)
T ss_pred CCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCC
Confidence 9999999997 788999999999999999974 357888999999999999999999999999999999999876
Q ss_pred Ceeeeee-------------cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCC
Q 005277 579 GRCVTPL-------------MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADC 645 (704)
Q Consensus 579 ~~~~~~~-------------~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg 645 (704)
..++..+ ..|...|.++.| ++++..|++|+.||
T Consensus 740 ~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~w----------------------------------s~~~~~lva~~~dG 785 (793)
T PLN00181 740 PMPVLSYKFKTIDPVSGLEVDDASQFISSVCW----------------------------------RGQSSTLVAANSTG 785 (793)
T ss_pred CCceEEEecccCCcccccccCCCCcEEEEEEE----------------------------------cCCCCeEEEecCCC
Confidence 6444222 223455777777 99999999999999
Q ss_pred cEEEEeC
Q 005277 646 TVKLWDV 652 (704)
Q Consensus 646 ~V~iWd~ 652 (704)
.|+||++
T Consensus 786 ~I~i~~~ 792 (793)
T PLN00181 786 NIKILEM 792 (793)
T ss_pred cEEEEec
Confidence 9999996
No 69
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=3.2e-27 Score=217.35 Aligned_cols=305 Identities=21% Similarity=0.358 Sum_probs=244.4
Q ss_pred CCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccC
Q 005277 340 PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG 419 (704)
Q Consensus 340 p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (704)
|.....+.+.-.+.|.+++|+|.|.+.|+|+...+.+|-.......... ..+. .. ....-..+..+.
T Consensus 21 ~~f~~i~~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~--~hea--~~---------~pp~v~~kr~kh 87 (350)
T KOG0641|consen 21 KHFEAINILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRH--AHEA--AK---------QPPSVLCKRNKH 87 (350)
T ss_pred cceEEEEEecchhheeeEEecCCCceEEeccCCceEEEEccccccCccc--cccc--cc---------CCCeEEeeeccc
Confidence 4445556677788999999999999999999999999986543211100 0000 00 001123455677
Q ss_pred CccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-----eEEeecCCcCeeEEEEcC----CCCEEEEEe-CCCeEEE
Q 005277 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN-----LVCYKGHNYPVWDVQFNP----QGHYFASSS-HDRTARI 489 (704)
Q Consensus 420 h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~-----~~~~~~h~~~V~~v~~sp----~~~~l~sgs-~dg~i~l 489 (704)
|.+.|+|.+|+|+|++|++|+.|.+|++.-.+...+ -..+..|.+.|.+++|-. .+..+++++ .|..|++
T Consensus 88 hkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~ 167 (350)
T KOG0641|consen 88 HKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYI 167 (350)
T ss_pred cCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEE
Confidence 999999999999999999999999999987664433 245677999999999965 356777765 5778888
Q ss_pred EECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeec--C-----CCCEEEEEEecCCCEE
Q 005277 490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG--H-----RSMILSLAMSPDGRYM 562 (704)
Q Consensus 490 wd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~--h-----~~~i~~l~~spdg~~l 562 (704)
-|..+++....+.+|.+.|.++- +=++-.+++|+.|.+|++||++-..+++++.. | ...|.+++..|.|++|
T Consensus 168 tdc~~g~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll 246 (350)
T KOG0641|consen 168 TDCGRGQGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLL 246 (350)
T ss_pred eecCCCCcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCccee
Confidence 89999999999999999998762 34678999999999999999999999887642 2 2579999999999999
Q ss_pred EEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEe
Q 005277 563 ASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGS 642 (704)
Q Consensus 563 ~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs 642 (704)
++|..|....+||++.++.++.+..|+..|.++.| ||...++.+|+
T Consensus 247 ~sg~~dssc~lydirg~r~iq~f~phsadir~vrf----------------------------------sp~a~yllt~s 292 (350)
T KOG0641|consen 247 ASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRF----------------------------------SPGAHYLLTCS 292 (350)
T ss_pred eeccCCCceEEEEeeCCceeeeeCCCccceeEEEe----------------------------------CCCceEEEEec
Confidence 99999999999999999999999999999999999 99999999999
Q ss_pred CCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 643 ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 643 ~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
.|..|++-|+...-.- .-++.....|...+..+.|+|...-+.+.+.|+|
T Consensus 293 yd~~ikltdlqgdla~-----------el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt 342 (350)
T KOG0641|consen 293 YDMKIKLTDLQGDLAH-----------ELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKT 342 (350)
T ss_pred ccceEEEeecccchhh-----------cCceEEEEeccCceEEEEecCccceeeeccCcce
Confidence 9999999998753210 0123345567888889999999999999998876
No 70
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.3e-28 Score=230.66 Aligned_cols=235 Identities=27% Similarity=0.422 Sum_probs=204.8
Q ss_pred CccCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCC-CceeEEeecCCcCeeEEEEcC-CCCEEEEEeCCCeEEEEECCCCc
Q 005277 420 HSGPVYSASFSPLGD-FILSSSADTTIRLWSTKL-NANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQ 496 (704)
Q Consensus 420 h~~~V~~l~~sp~~~-~l~s~s~Dg~I~lwd~~~-~~~~~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~lwd~~~~~ 496 (704)
-...++.++|+++.. .+++++.||++++||+.. ..++..++.|...|.++.|++ .+..++++|.|++|++|+...++
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 457899999999764 677999999999999653 357888999999999999999 66778999999999999999999
Q ss_pred eeEEeccCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCC-CcEEEEeecCCCCEEEEEEec-CCCEEEEEeCCCeEEE
Q 005277 497 PLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSS-GECVRIFIGHRSMILSLAMSP-DGRYMASGDEDGTIMM 573 (704)
Q Consensus 497 ~~~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~I~iwd~~~-~~~~~~~~~h~~~i~~l~~sp-dg~~l~sg~~dg~I~i 573 (704)
.++++.+|.+.|....|+| .++.++++|.|+++++||++. |+.+. +..|...|.|+.|+. +.+.|++|+.|+.|++
T Consensus 139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~ 217 (311)
T KOG0277|consen 139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRG 217 (311)
T ss_pred ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEE
Confidence 9999999999999999999 578999999999999999985 45444 889999999999998 5678999999999999
Q ss_pred EeCCCC-eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCC-CCEEEEEeCCCcEEEEe
Q 005277 574 WDLASG-RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCE-GSLLASGSADCTVKLWD 651 (704)
Q Consensus 574 wdl~~~-~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-g~~lasgs~Dg~V~iWd 651 (704)
||+++- .++..+.+|.-.|..+.| ||. ..+||+++.|-+++|||
T Consensus 218 wDir~~r~pl~eL~gh~~AVRkvk~----------------------------------Sph~~~lLaSasYDmT~riw~ 263 (311)
T KOG0277|consen 218 WDIRNLRTPLFELNGHGLAVRKVKF----------------------------------SPHHASLLASASYDMTVRIWD 263 (311)
T ss_pred EehhhccccceeecCCceEEEEEec----------------------------------CcchhhHhhhccccceEEecc
Confidence 999875 568889999999999999 775 46899999999999999
Q ss_pred CCCCccccccccccCccccccccccCCCCcCeEEEEEcc-CCcEEEEeecCCC
Q 005277 652 VTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSR-RNLLFAAGALSKT 703 (704)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~-~g~~La~gs~dgt 703 (704)
...+.. .+.++..|..-|..+.||+ +..++|+.+.|.+
T Consensus 264 ~~~~ds--------------~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~ 302 (311)
T KOG0277|consen 264 PERQDS--------------AIETVDHHTEFVCGLDWSLFDPGQVASTGWDEL 302 (311)
T ss_pred cccchh--------------hhhhhhccceEEeccccccccCceeeecccccc
Confidence 986542 3556667888899999997 5678898888864
No 71
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=1.2e-29 Score=257.34 Aligned_cols=261 Identities=25% Similarity=0.401 Sum_probs=225.6
Q ss_pred ccCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCC
Q 005277 328 LRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP 407 (704)
Q Consensus 328 ~~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (704)
+...+++|.......|+.+|.+|..+|..++|+++|..+.+++.|++|++||+.++.
T Consensus 235 mD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~----------------------- 291 (503)
T KOG0282|consen 235 MDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQ----------------------- 291 (503)
T ss_pred CCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccce-----------------------
Confidence 345778888777788899999999999999999999999999999999999998732
Q ss_pred CCCccceeeccCCccCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCe
Q 005277 408 NGRKRSYTLYQGHSGPVYSASFSPLG-DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT 486 (704)
Q Consensus 408 ~~~~~~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~ 486 (704)
....+. -...++|+.|+|++ +.+++|+.|+.|+.||+++++.+..|..|-++|..+.|-++|++|++.+.|++
T Consensus 292 -----~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks 365 (503)
T KOG0282|consen 292 -----VLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKS 365 (503)
T ss_pred -----EEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCcc
Confidence 222221 23467899999999 78889999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCceeEEec-cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC---cEEEEeecCC--CCEEEEEEecCCC
Q 005277 487 ARIWSMDRIQPLRIMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG---ECVRIFIGHR--SMILSLAMSPDGR 560 (704)
Q Consensus 487 i~lwd~~~~~~~~~~~-~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~---~~~~~~~~h~--~~i~~l~~spdg~ 560 (704)
++||+.+..-++.... .+.-...|+..||++++++.-+.|..|.++.+... .....|.+|. +.-..+.|||||+
T Consensus 366 ~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~ 445 (503)
T KOG0282|consen 366 VRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGR 445 (503)
T ss_pred EEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCC
Confidence 9999999877765443 23346778999999999999999999999987532 2234567775 4567789999999
Q ss_pred EEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCC-CCEEE
Q 005277 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCE-GSLLA 639 (704)
Q Consensus 561 ~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-g~~la 639 (704)
+|++|+.||.+.+||.++.+.+..+++|.+++..+.| +|. ...+|
T Consensus 446 ~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~w----------------------------------HP~e~Skva 491 (503)
T KOG0282|consen 446 TLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDW----------------------------------HPVEPSKVA 491 (503)
T ss_pred eEEeecCCccEEEeechhhhhhhccccCCcceEEEEe----------------------------------cCCCcceeE
Confidence 9999999999999999999999999999999999999 554 56899
Q ss_pred EEeCCCcEEEEe
Q 005277 640 SGSADCTVKLWD 651 (704)
Q Consensus 640 sgs~Dg~V~iWd 651 (704)
|+|.||.|++|+
T Consensus 492 t~~w~G~Ikiwd 503 (503)
T KOG0282|consen 492 TCGWDGLIKIWD 503 (503)
T ss_pred ecccCceeEecC
Confidence 999999999996
No 72
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=2.3e-29 Score=246.39 Aligned_cols=301 Identities=19% Similarity=0.330 Sum_probs=246.8
Q ss_pred ChhHHHHHHHhccCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEEcccCCccccccccCCC
Q 005277 317 PTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDG-SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGE 395 (704)
Q Consensus 317 ~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg-~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~ 395 (704)
|-+...+..+.+...---.-.+.|-++. +.+|.++|.|++=+|.. ..+|+|+.||.|+|||+..
T Consensus 34 Pfe~~rEy~RALNAtKleR~fakPFv~~--L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq------------- 98 (433)
T KOG0268|consen 34 PFERAREYTRALNATKLERVFAKPFVGS--LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ------------- 98 (433)
T ss_pred hhhhHHHHHHHhhhHHHHHHhhccchhh--ccccccccchhhcCcchhhhhhccccCceEEEEehhh-------------
Confidence 3445555555554322111223454444 47999999999999986 8899999999999999976
Q ss_pred CCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCC
Q 005277 396 NDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQG 475 (704)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~ 475 (704)
..+...+..|.|.|.+|++.. ..+++++.|.+|+.|.++. ..+.++.+ .+.+.+|.-+..+
T Consensus 99 ---------------R~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~ 159 (433)
T KOG0268|consen 99 ---------------RECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKN 159 (433)
T ss_pred ---------------hhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeec-ccccccccccccc
Confidence 456677889999999999986 6789999999999999985 46666764 4567788888888
Q ss_pred CEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCC-CEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEE
Q 005277 476 HYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLA 554 (704)
Q Consensus 476 ~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~-~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~ 554 (704)
..|+|||. .|.|||.....|++.+......|.++.|+|.. .+|+++.+|++|.+||++++.+++... -...-+.|+
T Consensus 160 ~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~Is 236 (433)
T KOG0268|consen 160 SVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTIC 236 (433)
T ss_pred ccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee-eecccccee
Confidence 89999975 69999999999999999888999999999964 667778899999999999999887664 344567899
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCC-eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCC
Q 005277 555 MSPDGRYMASGDEDGTIMMWDLASG-RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASC 633 (704)
Q Consensus 555 ~spdg~~l~sg~~dg~I~iwdl~~~-~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 633 (704)
|+|.+-.+++|++|..++.+|++.. +++....+|.+.|.+++| ||
T Consensus 237 wnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdf----------------------------------sp 282 (433)
T KOG0268|consen 237 WNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDF----------------------------------SP 282 (433)
T ss_pred cCccccceeeccccccceehhhhhhcccchhhcccceeEEEecc----------------------------------CC
Confidence 9998888999999999999999864 577888999999999999 99
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCC-CcCeEEEEEccCCcEEEEeecCCC
Q 005277 634 EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTK-STPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 634 ~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
.|+-+++||.|.+|+||.+..+..- ..+.++ -..|.+|.||.|.+++.+||.|++
T Consensus 283 tG~EfvsgsyDksIRIf~~~~~~SR---------------diYhtkRMq~V~~Vk~S~Dskyi~SGSdd~n 338 (433)
T KOG0268|consen 283 TGQEFVSGSYDKSIRIFPVNHGHSR---------------DIYHTKRMQHVFCVKYSMDSKYIISGSDDGN 338 (433)
T ss_pred CcchhccccccceEEEeecCCCcch---------------hhhhHhhhheeeEEEEeccccEEEecCCCcc
Confidence 9999999999999999999876421 122222 346999999999999999999985
No 73
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=4.1e-28 Score=239.24 Aligned_cols=263 Identities=24% Similarity=0.449 Sum_probs=219.8
Q ss_pred ccCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcC-C--CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccc
Q 005277 328 LRNRVHLSSAALPSVSFYTFINTHNGLNCASISQ-D--GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDI 404 (704)
Q Consensus 328 ~~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~-d--g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~ 404 (704)
+....++|+... .+.++..+|.+.|.+++|-- + ...+++++.|.++++|.++.....
T Consensus 123 YDg~~riWd~~G--k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~------------------ 182 (423)
T KOG0313|consen 123 YDGTSRIWDLKG--KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK------------------ 182 (423)
T ss_pred cCCeeEEEecCC--ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh------------------
Confidence 344556665443 45567889999999887743 2 346999999999999998763211
Q ss_pred cCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCC-------------------------CCceeEEe
Q 005277 405 IGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTK-------------------------LNANLVCY 459 (704)
Q Consensus 405 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~-------------------------~~~~~~~~ 459 (704)
......-.||..+|.+++..+++..+++||.|.+|.+|+.. +..++..+
T Consensus 183 ------~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl 256 (423)
T KOG0313|consen 183 ------VKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTL 256 (423)
T ss_pred ------hhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEe
Confidence 12223334999999999999999999999999999999932 22346778
Q ss_pred ecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCc-
Q 005277 460 KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE- 538 (704)
Q Consensus 460 ~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~- 538 (704)
.+|..+|.++.|++ ...+++++.|.+|+.||+.++..+..+.+ ...+.|+..+|..++|++|+.|..|++||.+++.
T Consensus 257 ~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~g 334 (423)
T KOG0313|consen 257 EGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDG 334 (423)
T ss_pred cccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCC
Confidence 89999999999997 66799999999999999999988877764 4679999999999999999999999999999763
Q ss_pred --EEEEeecCCCCEEEEEEecC-CCEEEEEeCCCeEEEEeCCCCe-eeeeecCCCceeeeeeeeeeehcccccccccccc
Q 005277 539 --CVRIFIGHRSMILSLAMSPD-GRYMASGDEDGTIMMWDLASGR-CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKV 614 (704)
Q Consensus 539 --~~~~~~~h~~~i~~l~~spd-g~~l~sg~~dg~I~iwdl~~~~-~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~ 614 (704)
....+.+|++.|.++.|+|. ...|++|+.|+++++||+++.+ ++..+.+|...|.++.|
T Consensus 335 s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW----------------- 397 (423)
T KOG0313|consen 335 SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDW----------------- 397 (423)
T ss_pred ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEec-----------------
Confidence 45678899999999999995 4578899999999999999987 99999999999999999
Q ss_pred ccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCC
Q 005277 615 STGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVT 653 (704)
Q Consensus 615 ~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~ 653 (704)
. ++..|++||.|++|+|+.-.
T Consensus 398 -----------------~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 398 -----------------N-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred -----------------c-CCceEEeccCcceEEEeccc
Confidence 2 56799999999999998754
No 74
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=3.9e-28 Score=247.25 Aligned_cols=291 Identities=22% Similarity=0.328 Sum_probs=223.8
Q ss_pred CCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeec-c
Q 005277 340 PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY-Q 418 (704)
Q Consensus 340 p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 418 (704)
|-.+-..+.+|...|.++++.|.|..|++|+.|-+|++||+..+.... +..+.+ .
T Consensus 156 P~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~------------------------~~fr~l~P 211 (641)
T KOG0772|consen 156 PGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASM------------------------RSFRQLQP 211 (641)
T ss_pred CccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccc------------------------hhhhccCc
Confidence 444555677888899999999999999999999999999998743211 112222 2
Q ss_pred CCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE------------eecCCcCeeEEEEcCC-CCEEEEEeCCC
Q 005277 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVC------------YKGHNYPVWDVQFNPQ-GHYFASSSHDR 485 (704)
Q Consensus 419 ~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~------------~~~h~~~V~~v~~sp~-~~~l~sgs~dg 485 (704)
.....|.++.|++.+..|++.+.....+|+|.+....+.. -+||...++|.+|+|. ...|++++.||
T Consensus 212 ~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dg 291 (641)
T KOG0772|consen 212 CETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDG 291 (641)
T ss_pred ccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCC
Confidence 2345799999999999999888888999999875444332 3579999999999995 46799999999
Q ss_pred eEEEEECCCCc-eeEEec-----cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCc---EEEEeecCCC--CEEEEE
Q 005277 486 TARIWSMDRIQ-PLRIMA-----GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE---CVRIFIGHRS--MILSLA 554 (704)
Q Consensus 486 ~i~lwd~~~~~-~~~~~~-----~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~---~~~~~~~h~~--~i~~l~ 554 (704)
++|+||+++.+ ....+. +..-+++.++|+|+|++||+|+.||+|.+||.++.- ....-..|.. .|+||.
T Consensus 292 tlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~ 371 (641)
T KOG0772|consen 292 TLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSIS 371 (641)
T ss_pred cEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEE
Confidence 99999998754 333332 334578999999999999999999999999975432 1223346776 899999
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCCe-eeeeecCCCc--eeeeeeeeeeehccccccccccccccceeeeeeeEEeeccc
Q 005277 555 MSPDGRYMASGDEDGTIMMWDLASGR-CVTPLMGHTS--CVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCA 631 (704)
Q Consensus 555 ~spdg~~l~sg~~dg~I~iwdl~~~~-~~~~~~~h~~--~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (704)
||+||++|++-+.|+++++||++..+ ++....+-.. +-+.+ |+
T Consensus 372 FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc----------------------------------~F 417 (641)
T KOG0772|consen 372 FSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDC----------------------------------CF 417 (641)
T ss_pred eccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCcc----------------------------------cc
Confidence 99999999999999999999998753 4444433221 22333 44
Q ss_pred CCCCCEEEEEeC------CCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 632 SCEGSLLASGSA------DCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 632 s~~g~~lasgs~------Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
||+.++|++|+. .|++.+||..+-.. ++.+.-....|..+.|+|.-+-+.+|+.||+
T Consensus 418 SPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~---------------v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~ 480 (641)
T KOG0772|consen 418 SPDDKLILTGTSAPNGMTAGTLFFFDRMTLDT---------------VYKIDISTASVVRCLWHPKLNQIFAGSGDGT 480 (641)
T ss_pred CCCceEEEecccccCCCCCceEEEEeccceee---------------EEEecCCCceEEEEeecchhhheeeecCCCc
Confidence 999999999963 57899999877543 4455555778999999999887888888886
No 75
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.9e-28 Score=223.84 Aligned_cols=237 Identities=26% Similarity=0.457 Sum_probs=212.5
Q ss_pred ceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 005277 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM 492 (704)
Q Consensus 413 ~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~ 492 (704)
....+..|.++|..+.|+-+|+|.++|+.|.+|++|+...+.++++|.+|...|.+++.+.|+..|++|+.|+.+.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC--CcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCe
Q 005277 493 DRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS--GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT 570 (704)
Q Consensus 493 ~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~--~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~ 570 (704)
.+++.++.+.+|.+.|+.++|+.+...+++|+.|.++++||.++ .++++.+......|.++..+ +..|++|+.||+
T Consensus 89 ~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGt 166 (307)
T KOG0316|consen 89 NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGT 166 (307)
T ss_pred ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCc
Confidence 99999999999999999999999999999999999999999986 46788888888899999885 678999999999
Q ss_pred EEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEE
Q 005277 571 IMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLW 650 (704)
Q Consensus 571 I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iW 650 (704)
++.||++.|+...-..+| +|+++.| +++++....++.|+++++.
T Consensus 167 vRtydiR~G~l~sDy~g~--pit~vs~----------------------------------s~d~nc~La~~l~stlrLl 210 (307)
T KOG0316|consen 167 VRTYDIRKGTLSSDYFGH--PITSVSF----------------------------------SKDGNCSLASSLDSTLRLL 210 (307)
T ss_pred EEEEEeecceeehhhcCC--cceeEEe----------------------------------cCCCCEEEEeeccceeeec
Confidence 999999999887666554 7889988 9999999999999999999
Q ss_pred eCCCCccccccccccCccccccccccCCCCcCeEEE--EEccCCcEEEEeecCC
Q 005277 651 DVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSL--QFSRRNLLFAAGALSK 702 (704)
Q Consensus 651 d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l--~fs~~g~~La~gs~dg 702 (704)
|-.+++. +..+.+|...=+.+ +++.....+++|+.||
T Consensus 211 Dk~tGkl---------------L~sYkGhkn~eykldc~l~qsdthV~sgSEDG 249 (307)
T KOG0316|consen 211 DKETGKL---------------LKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDG 249 (307)
T ss_pred ccchhHH---------------HHHhcccccceeeeeeeecccceeEEeccCCc
Confidence 9998864 55666666554443 5566777888888876
No 76
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=3.3e-27 Score=226.61 Aligned_cols=270 Identities=20% Similarity=0.323 Sum_probs=217.5
Q ss_pred CCCEEEEEEcC-CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEE
Q 005277 351 HNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (704)
Q Consensus 351 ~~~V~~~~fs~-dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 429 (704)
.+.|.+++||| ...++++|+.||+||+|++...+. ..-+....|.++|.+++|
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~--------------------------~~~ka~~~~~~PvL~v~W 80 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ--------------------------LVPKAQQSHDGPVLDVCW 80 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCc--------------------------ccchhhhccCCCeEEEEE
Confidence 46799999999 567788999999999999975211 111345679999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCC--EEEEEeCCCeEEEEECCCCceeEEeccCCCC
Q 005277 430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH--YFASSSHDRTARIWSMDRIQPLRIMAGHLSD 507 (704)
Q Consensus 430 sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~--~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~ 507 (704)
+.||..+++|+.|+.+++||+.++ .+..+..|..+|..+.|-+... .|+|||.|++|++||++...++..+. -...
T Consensus 81 sddgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeR 158 (347)
T KOG0647|consen 81 SDDGSKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPER 158 (347)
T ss_pred ccCCceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccce
Confidence 999999999999999999999988 5566777999999999988665 79999999999999999988888776 3355
Q ss_pred eeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEE--eecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCC--eeee
Q 005277 508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI--FIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG--RCVT 583 (704)
Q Consensus 508 V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~--~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~--~~~~ 583 (704)
+.++.. -..+++++..++.|.+|+++++..... ...-+-.++|++..+|....+.|+-+|.+.|..+..+ +.-.
T Consensus 159 vYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nF 236 (347)
T KOG0647|consen 159 VYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNF 236 (347)
T ss_pred eeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCce
Confidence 665543 345788899999999999987643221 1123446899999999888899999999999998876 3334
Q ss_pred eecCCCc---------eeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCC
Q 005277 584 PLMGHTS---------CVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTT 654 (704)
Q Consensus 584 ~~~~h~~---------~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~ 654 (704)
+++.|.. .|.+++| +|.-..|+|+|.||+..+||-..
T Consensus 237 tFkCHR~~~~~~~~VYaVNsi~F----------------------------------hP~hgtlvTaGsDGtf~FWDkda 282 (347)
T KOG0647|consen 237 TFKCHRSTNSVNDDVYAVNSIAF----------------------------------HPVHGTLVTAGSDGTFSFWDKDA 282 (347)
T ss_pred eEEEeccCCCCCCceEEecceEe----------------------------------ecccceEEEecCCceEEEecchh
Confidence 5555652 3444455 88888999999999999999876
Q ss_pred CccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEee
Q 005277 655 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 699 (704)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs 699 (704)
..+ +.+.+.+..||++.+|+.+|.++|.+.
T Consensus 283 r~k---------------Lk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 283 RTK---------------LKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred hhh---------------hhccCcCCCccceeEecCCCCEEEEEe
Confidence 543 677889999999999999999998764
No 77
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.8e-27 Score=227.36 Aligned_cols=248 Identities=23% Similarity=0.380 Sum_probs=211.6
Q ss_pred EEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC
Q 005277 344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (704)
Q Consensus 344 ~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 423 (704)
.+.+..|.++|+|++. ++.++|+|+.|-+|+|||+.. ......+..|.+.
T Consensus 36 lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k----------------------------~~qlg~ll~Hags 85 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRK----------------------------RKQLGILLSHAGS 85 (362)
T ss_pred cccccccccceeEEEe--cceeEeccCCCCcEEEEeccc----------------------------hhhhcceeccccc
Confidence 4568889999999998 589999999999999999986 2344556679999
Q ss_pred eEEEEEcCCCC--EEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe
Q 005277 424 VYSASFSPLGD--FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM 501 (704)
Q Consensus 424 V~~l~~sp~~~--~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~ 501 (704)
|+++.|.++-. .|++|+.||.|.+|+...+.++..+++|.+.|+.++.+|.|++-++.+.|+.+++||+-+++.-...
T Consensus 86 itaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~ 165 (362)
T KOG0294|consen 86 ITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVL 165 (362)
T ss_pred eEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceee
Confidence 99999999775 8999999999999999999999999999999999999999999999999999999999887765554
Q ss_pred ccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCee
Q 005277 502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC 581 (704)
Q Consensus 502 ~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~ 581 (704)
.- ...-+.|.|+|.|.+++.++.+ .|-+|.+.+.+..+.+.. ...+.|+.|- ++..|++|++|+.|.+||..+..+
T Consensus 166 ~L-~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~ 241 (362)
T KOG0294|consen 166 NL-KNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIEN-PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTP 241 (362)
T ss_pred cc-CCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhc-cccceeeeec-CCceEEEecCCceEEEeccCCCcc
Confidence 42 1223449999999999998766 589999887766554432 2457777775 678899999999999999999999
Q ss_pred eeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcc
Q 005277 582 VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTK 657 (704)
Q Consensus 582 ~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~ 657 (704)
...+.+|...|.++.+-. .|++.+|+|+|.||.|+|||+....+
T Consensus 242 ~~~~~AH~~RVK~i~~~~--------------------------------~~~~~~lvTaSSDG~I~vWd~~~~~k 285 (362)
T KOG0294|consen 242 LTEFLAHENRVKDIASYT--------------------------------NPEHEYLVTASSDGFIKVWDIDMETK 285 (362)
T ss_pred ceeeecchhheeeeEEEe--------------------------------cCCceEEEEeccCceEEEEEcccccc
Confidence 999999999999987511 78889999999999999999988643
No 78
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=4.3e-27 Score=258.00 Aligned_cols=261 Identities=27% Similarity=0.491 Sum_probs=232.6
Q ss_pred cCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCC
Q 005277 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (704)
Q Consensus 329 ~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (704)
...+++|+......+.-.+.+|.++|.+++|..-+.+|++|+.|.+++|||..+
T Consensus 227 ~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s-------------------------- 280 (537)
T KOG0274|consen 227 DSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCST-------------------------- 280 (537)
T ss_pred CceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCC--------------------------
Confidence 345567765554444444999999999999988889999999999999999776
Q ss_pred CCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEE
Q 005277 409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR 488 (704)
Q Consensus 409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~ 488 (704)
..+...+.+|.+.|.++... ...+++|+.|.+|++|++.++.++..+.+|..+|.++..+ +.++++|+.|++|+
T Consensus 281 --g~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~ 354 (537)
T KOG0274|consen 281 --GECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVK 354 (537)
T ss_pred --CcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEE
Confidence 46778889999999999876 5568889999999999999999999999999999999997 88999999999999
Q ss_pred EEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC-cEEEEeecCCCCEEEEEEecCCCEEEEEeC
Q 005277 489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSPDGRYMASGDE 567 (704)
Q Consensus 489 lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~-~~~~~~~~h~~~i~~l~~spdg~~l~sg~~ 567 (704)
+||..+++++..+.+|...|.++.+.+. +++++|+.|++|++||++++ +++.++.+|..-+.++.+ .+++|++++.
T Consensus 355 VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~a 431 (537)
T KOG0274|consen 355 VWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSA 431 (537)
T ss_pred EEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccc
Confidence 9999999999999999999999988665 89999999999999999999 999999999998877766 5889999999
Q ss_pred CCeEEEEeCCCCeeeeeecC-CCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCc
Q 005277 568 DGTIMMWDLASGRCVTPLMG-HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCT 646 (704)
Q Consensus 568 dg~I~iwdl~~~~~~~~~~~-h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~ 646 (704)
||.|++||..+++++..+.+ |...|+.+.+ . ...+++++.||+
T Consensus 432 D~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~----------------------------------~--~~~il~s~~~~~ 475 (537)
T KOG0274|consen 432 DGTIKLWDAEEGECLRTLEGRHVGGVSALAL----------------------------------G--KEEILCSSDDGS 475 (537)
T ss_pred cccEEEeecccCceeeeeccCCcccEEEeec----------------------------------C--cceEEEEecCCe
Confidence 99999999999999999998 6788888876 3 468899999999
Q ss_pred EEEEeCCCCccccc
Q 005277 647 VKLWDVTTSTKVLK 660 (704)
Q Consensus 647 V~iWd~~~~~~~~~ 660 (704)
+++||+.++.....
T Consensus 476 ~~l~dl~~~~~~~~ 489 (537)
T KOG0274|consen 476 VKLWDLRSGTLIRT 489 (537)
T ss_pred eEEEecccCchhhh
Confidence 99999999876543
No 79
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.2e-27 Score=237.76 Aligned_cols=249 Identities=21% Similarity=0.386 Sum_probs=211.4
Q ss_pred EEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC
Q 005277 344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (704)
Q Consensus 344 ~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 423 (704)
..|+.+|..+|.-+.||||.++|++++.|-.+.+||+.++..... .-.+|...
T Consensus 262 ~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~---------------------------y~~~~~~S 314 (519)
T KOG0293|consen 262 KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHL---------------------------YPSGLGFS 314 (519)
T ss_pred eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhh---------------------------cccCcCCC
Confidence 568899999999999999999999999999999999987432211 11235678
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecC-CcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec
Q 005277 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH-NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA 502 (704)
Q Consensus 424 V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h-~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~ 502 (704)
+.+++|.|||..+++|+.|++|..||++ |......++- ...|++++..+||+++++.+.|..+++++.++........
T Consensus 315 ~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis 393 (519)
T KOG0293|consen 315 VSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS 393 (519)
T ss_pred cceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc
Confidence 9999999999999999999999999998 4445555543 3569999999999999999999999999998765554444
Q ss_pred cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCC--EEEEEEec-CCCEEEEEeCCCeEEEEeCCCC
Q 005277 503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM--ILSLAMSP-DGRYMASGDEDGTIMMWDLASG 579 (704)
Q Consensus 503 ~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~--i~~l~~sp-dg~~l~sg~~dg~I~iwdl~~~ 579 (704)
...+|++++.+.+++++++.-.+..|++||+...+.++.+.||+.. +..-||-- +..++++|++|+.|+||+..+|
T Consensus 394 -e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg 472 (519)
T KOG0293|consen 394 -EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG 472 (519)
T ss_pred -ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC
Confidence 4578999999999999999999999999999999999999999763 44445543 4579999999999999999999
Q ss_pred eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCC-CCCEEEEEeCCCcEEEEeCCCC
Q 005277 580 RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASC-EGSLLASGSADCTVKLWDVTTS 655 (704)
Q Consensus 580 ~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~lasgs~Dg~V~iWd~~~~ 655 (704)
+++..+.||...|.+++| +| +..++|++|.||+||||.....
T Consensus 473 kll~~LsGHs~~vNcVsw----------------------------------NP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 473 KLLAVLSGHSKTVNCVSW----------------------------------NPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred ceeEeecCCcceeeEEec----------------------------------CCCCHHHhhccCCCCeEEEecCCcc
Confidence 999999999999999999 55 4578999999999999987653
No 80
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=5.1e-27 Score=237.31 Aligned_cols=263 Identities=27% Similarity=0.424 Sum_probs=218.1
Q ss_pred CCeEEEEEeeCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeecc
Q 005277 340 PSVSFYTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ 418 (704)
Q Consensus 340 p~~~~~~~~~~~~~V~~~~fs~d-g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (704)
+.+.......|.+.|+.+..-|. ..++|+++..+.|.|||..+....... .+..+.-..+.
T Consensus 113 ~~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~------------------~~~~~Pdl~L~ 174 (422)
T KOG0264|consen 113 GKVEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA------------------SGECRPDLRLK 174 (422)
T ss_pred cceEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc------------------cccCCCceEEE
Confidence 34555566889999999999986 678888899999999998763221110 01234456788
Q ss_pred CCccCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCc-------eeEEeecCCcCeeEEEEcC-CCCEEEEEeCCCeEEE
Q 005277 419 GHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNA-------NLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARI 489 (704)
Q Consensus 419 ~h~~~V~~l~~sp~~~-~l~s~s~Dg~I~lwd~~~~~-------~~~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~l 489 (704)
||.+.-++++|++... .|++|+.|++|.+||+.... ....+.+|...|.+++|++ +...|++++.|+.+.|
T Consensus 175 gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~i 254 (422)
T KOG0264|consen 175 GHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMI 254 (422)
T ss_pred eecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEE
Confidence 9999899999999765 68899999999999997543 3567889999999999999 6778999999999999
Q ss_pred EECC--CCceeEEeccCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCC-cEEEEeecCCCCEEEEEEecC-CCEEEE
Q 005277 490 WSMD--RIQPLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSPD-GRYMAS 564 (704)
Q Consensus 490 wd~~--~~~~~~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~-~~~~~~~~h~~~i~~l~~spd-g~~l~s 564 (704)
||++ +.++.....+|.+.|.|++|+| ++..||+||.|++|++||+|+- +++..+.+|...|.++.|||+ ...|++
T Consensus 255 wD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLAS 334 (422)
T KOG0264|consen 255 WDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLAS 334 (422)
T ss_pred EEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEe
Confidence 9999 5667778889999999999999 5788899999999999999974 578889999999999999996 568899
Q ss_pred EeCCCeEEEEeCCCC--------------eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecc
Q 005277 565 GDEDGTIMMWDLASG--------------RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGC 630 (704)
Q Consensus 565 g~~dg~I~iwdl~~~--------------~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (704)
++.|+.+.|||+..- +++..-.||...|..++|
T Consensus 335 Sg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsW--------------------------------- 381 (422)
T KOG0264|consen 335 SGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSW--------------------------------- 381 (422)
T ss_pred cccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccC---------------------------------
Confidence 999999999999642 234555789999999999
Q ss_pred cCCCC-CEEEEEeCCCcEEEEeCCC
Q 005277 631 ASCEG-SLLASGSADCTVKLWDVTT 654 (704)
Q Consensus 631 ~s~~g-~~lasgs~Dg~V~iWd~~~ 654 (704)
+|.. -.|++.+.|+.+.||.+..
T Consensus 382 -np~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 382 -NPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred -CCCCCeEEEEecCCceEEEeeccc
Confidence 6765 4678899999999999874
No 81
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=4e-26 Score=250.20 Aligned_cols=230 Identities=17% Similarity=0.227 Sum_probs=188.4
Q ss_pred EeeCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277 347 FINTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (704)
Q Consensus 347 ~~~~~~~V~~~~fs~-dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (704)
+.+|.+.|++++|+| ++++||+|+.||+|+||++....... ........+.+|...|.
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~---------------------~~~~~l~~L~gH~~~V~ 129 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ---------------------NISDPIVHLQGHTKKVG 129 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc---------------------ccCcceEEecCCCCcEE
Confidence 578999999999999 89999999999999999987521100 01134566889999999
Q ss_pred EEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccC
Q 005277 426 SASFSPLG-DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH 504 (704)
Q Consensus 426 ~l~~sp~~-~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~ 504 (704)
+++|+|++ .+|++|+.|++|+|||+.++..+..+.+|...|.+++|+|+|.+|++|+.|++|++||+++++.+..+.+|
T Consensus 130 ~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H 209 (493)
T PTZ00421 130 IVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAH 209 (493)
T ss_pred EEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecC
Confidence 99999986 68999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred CCC-eeEEEEcCCCCEEEEEE----CCCcEEEEeCCCCc-EEEEeecC-CCCEEEEEEecCCCEEEEEe-CCCeEEEEeC
Q 005277 505 LSD-VDCVRWHINCNYIATGS----SDKTVRLWDVSSGE-CVRIFIGH-RSMILSLAMSPDGRYMASGD-EDGTIMMWDL 576 (704)
Q Consensus 505 ~~~-V~~v~~~p~~~~l~tgs----~dg~I~iwd~~~~~-~~~~~~~h-~~~i~~l~~spdg~~l~sg~-~dg~I~iwdl 576 (704)
.+. +..+.|++++..+++++ .|+.|++||+++.. ++.....+ ...+....|++++++|++|+ .||.|++||+
T Consensus 210 ~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl 289 (493)
T PTZ00421 210 ASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFEL 289 (493)
T ss_pred CCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEe
Confidence 765 45678999888887654 47899999998754 44433333 34566678999999999887 5999999999
Q ss_pred CCCeeeeeecC-CCceeeeeee
Q 005277 577 ASGRCVTPLMG-HTSCVWTLAY 597 (704)
Q Consensus 577 ~~~~~~~~~~~-h~~~V~sl~~ 597 (704)
.+++.+..... +..++..+.|
T Consensus 290 ~~~~~~~~~~~~s~~~~~g~~~ 311 (493)
T PTZ00421 290 MNERLTFCSSYSSVEPHKGLCM 311 (493)
T ss_pred eCCceEEEeeccCCCCCcceEe
Confidence 99887765533 3344555555
No 82
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=1e-26 Score=257.33 Aligned_cols=267 Identities=23% Similarity=0.413 Sum_probs=222.6
Q ss_pred EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (704)
Q Consensus 346 ~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (704)
+...|.+.|+|+.|+|||++||+|++|+.|.||.....+..... +..+. .......+.+..+.+|.+.|.
T Consensus 64 ~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~f-gs~g~---------~~~vE~wk~~~~l~~H~~DV~ 133 (942)
T KOG0973|consen 64 TMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVF-GSTGG---------AKNVESWKVVSILRGHDSDVL 133 (942)
T ss_pred eeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccc-ccccc---------ccccceeeEEEEEecCCCccc
Confidence 46789999999999999999999999999999997741110000 00000 011223567888999999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCC
Q 005277 426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL 505 (704)
Q Consensus 426 ~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~ 505 (704)
.++|+|++.+|++++.|++|.+|+..+...+..+++|.+.|..+.|.|-|+|||+-+.|++|++|++.+......+.++.
T Consensus 134 Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf 213 (942)
T KOG0973|consen 134 DVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPF 213 (942)
T ss_pred eeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999988877776666443
Q ss_pred ------CCeeEEEEcCCCCEEEEEE----CCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecC-----CC----------
Q 005277 506 ------SDVDCVRWHINCNYIATGS----SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD-----GR---------- 560 (704)
Q Consensus 506 ------~~V~~v~~~p~~~~l~tgs----~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spd-----g~---------- 560 (704)
.-+..+.|+|||.+|++.. .-.++.|.+-.+.+.-..+.||.+++.++.|+|. .+
T Consensus 214 ~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~ 293 (942)
T KOG0973|consen 214 EESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCY 293 (942)
T ss_pred hhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcc
Confidence 3467899999999999853 2356888888788877889999999999999991 11
Q ss_pred --EEEEEeCCCeEEEEeCCCCeeeeeecC-CCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCE
Q 005277 561 --YMASGDEDGTIMMWDLASGRCVTPLMG-HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSL 637 (704)
Q Consensus 561 --~l~sg~~dg~I~iwdl~~~~~~~~~~~-h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 637 (704)
.+|+|+.|++|.||.....+++..+.. ....|..++| +|||..
T Consensus 294 y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsW----------------------------------spdG~~ 339 (942)
T KOG0973|consen 294 YCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSW----------------------------------SPDGFS 339 (942)
T ss_pred eEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeE----------------------------------cCCCCe
Confidence 678899999999999988887765532 4578999999 999999
Q ss_pred EEEEeCCCcEEEEeCCCCc
Q 005277 638 LASGSADCTVKLWDVTTST 656 (704)
Q Consensus 638 lasgs~Dg~V~iWd~~~~~ 656 (704)
|+++|.||+|.+..++...
T Consensus 340 LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 340 LFACSLDGTVALIHFEEKE 358 (942)
T ss_pred EEEEecCCeEEEEEcchHH
Confidence 9999999999999998643
No 83
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=8.7e-27 Score=237.06 Aligned_cols=246 Identities=21% Similarity=0.349 Sum_probs=213.0
Q ss_pred EeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEE
Q 005277 347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (704)
Q Consensus 347 ~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 426 (704)
+......|.++.|-.||++||+|...|.|+|||+++ ....+.+.+|+.+|..
T Consensus 64 ~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~----------------------------r~iLR~~~ah~apv~~ 115 (487)
T KOG0310|consen 64 FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS----------------------------RVILRQLYAHQAPVHV 115 (487)
T ss_pred HHhhccceeEEEeecCCeEEEccCCcCcEEEecccc----------------------------HHHHHHHhhccCceeE
Confidence 444567899999999999999999999999999654 3355778899999999
Q ss_pred EEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcC-CCCEEEEEeCCCeEEEEECCCC-ceeEEecc
Q 005277 427 ASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRI-QPLRIMAG 503 (704)
Q Consensus 427 l~~sp~~~-~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~lwd~~~~-~~~~~~~~ 503 (704)
+.|+|++. .+++|+.|+.+++||+.+......+.+|+..|.|.+|+| +++.++|||.||+|++||++.. ..+..+.
T Consensus 116 ~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln- 194 (487)
T KOG0310|consen 116 TKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN- 194 (487)
T ss_pred EEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-
Confidence 99999766 566899999999999998887668899999999999999 5678999999999999999987 5555554
Q ss_pred CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCc-EEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeee
Q 005277 504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE-CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582 (704)
Q Consensus 504 ~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~-~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~ 582 (704)
|..+|..+.+-|.|..|++++ ...|++||+.+|. .+..+..|...|+|+++..++..|++|+-||.+++||+.+.+.+
T Consensus 195 hg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv 273 (487)
T KOG0310|consen 195 HGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVV 273 (487)
T ss_pred CCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEE
Confidence 899999999999999999986 4579999999654 44445559999999999999999999999999999998888888
Q ss_pred eeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcc
Q 005277 583 TPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTK 657 (704)
Q Consensus 583 ~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~ 657 (704)
..+. ..++|-+++. +|++..++.|..||.+.+=+....++
T Consensus 274 ~s~~-~~~pvLsiav----------------------------------s~dd~t~viGmsnGlv~~rr~~~k~k 313 (487)
T KOG0310|consen 274 HSWK-YPGPVLSIAV----------------------------------SPDDQTVVIGMSNGLVSIRRREVKKK 313 (487)
T ss_pred Eeee-cccceeeEEe----------------------------------cCCCceEEEecccceeeeehhhcccC
Confidence 7775 6788999988 99999999999999998886655443
No 84
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4e-27 Score=226.52 Aligned_cols=282 Identities=22% Similarity=0.387 Sum_probs=233.1
Q ss_pred EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (704)
Q Consensus 346 ~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (704)
.+.+|.++|..++......++.+++.|.+-+||.+.. ..+...+.||.+.|+
T Consensus 143 e~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Es----------------------------g~CL~~Y~GH~GSVN 194 (481)
T KOG0300|consen 143 ELEGHKDGIWHVAADSTQPICGTASADHTARIWSLES----------------------------GACLATYTGHTGSVN 194 (481)
T ss_pred hhcccccceeeehhhcCCcceeecccccceeEEeecc----------------------------ccceeeeccccccee
Confidence 4679999999999988788999999999999999986 456778899999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCC------C----------------------------------CceeEEeecCCcC
Q 005277 426 SASFSPLGDFILSSSADTTIRLWSTK------L----------------------------------NANLVCYKGHNYP 465 (704)
Q Consensus 426 ~l~~sp~~~~l~s~s~Dg~I~lwd~~------~----------------------------------~~~~~~~~~h~~~ 465 (704)
++.|++.+.++++++.|++..||... . ..++..+.+|.+.
T Consensus 195 sikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~v 274 (481)
T KOG0300|consen 195 SIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAV 274 (481)
T ss_pred eEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccc
Confidence 99999999999999999999999611 0 0124567789999
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC-CcEEEEee
Q 005277 466 VWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-GECVRIFI 544 (704)
Q Consensus 466 V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~-~~~~~~~~ 544 (704)
|.+..|...|+.++++++|++..+||++++.++..+.||....+.++-||..+++++.+.|.+.++||++. -..+.+|.
T Consensus 275 V~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQ 354 (481)
T KOG0300|consen 275 VSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQ 354 (481)
T ss_pred eEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999984 35688999
Q ss_pred cCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCe-eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeee
Q 005277 545 GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR-CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSL 623 (704)
Q Consensus 545 ~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~-~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (704)
||...|+++.|..+. .+++|++|.+|++||+++.+ ++.+++ -.+++..++.
T Consensus 355 GHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvav-------------------------- 406 (481)
T KOG0300|consen 355 GHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAV-------------------------- 406 (481)
T ss_pred ccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeee-cCCccceeEe--------------------------
Confidence 999999999998665 58899999999999998754 455554 3455666665
Q ss_pred eEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCC--cEEEEeecC
Q 005277 624 TIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRN--LLFAAGALS 701 (704)
Q Consensus 624 ~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g--~~La~gs~d 701 (704)
+..+.+|+.--.+..|++||+...... .. +-..-.+|...|.|++|..+- .-|.++++|
T Consensus 407 --------s~g~~iIAiPhDNRqvRlfDlnG~Rla-Rl----------PrtsRqgHrRMV~c~AW~eehp~cnLftcGFD 467 (481)
T KOG0300|consen 407 --------SKGHPIIAIPHDNRQVRLFDLNGNRLA-RL----------PRTSRQGHRRMVTCCAWLEEHPACNLFTCGFD 467 (481)
T ss_pred --------ecCCceEEeccCCceEEEEecCCCccc-cC----------CcccccccceeeeeeeccccCccccccccccc
Confidence 666778888888889999999764321 11 112345788899999997543 224455555
Q ss_pred C
Q 005277 702 K 702 (704)
Q Consensus 702 g 702 (704)
.
T Consensus 468 R 468 (481)
T KOG0300|consen 468 R 468 (481)
T ss_pred c
Confidence 3
No 85
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=1.8e-26 Score=244.66 Aligned_cols=263 Identities=25% Similarity=0.429 Sum_probs=228.3
Q ss_pred CeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCC
Q 005277 330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG 409 (704)
Q Consensus 330 ~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (704)
..+.+|+... ..|..|+. .+-+.|..|-|.++++++|...|.+.+||+..
T Consensus 394 ~SikiWn~~t-~kciRTi~--~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS--------------------------- 443 (888)
T KOG0306|consen 394 ESIKIWNRDT-LKCIRTIT--CGYILASKFVPGDRYIVLGTKNGELQVFDLAS--------------------------- 443 (888)
T ss_pred CcEEEEEccC-cceeEEec--cccEEEEEecCCCceEEEeccCCceEEEEeeh---------------------------
Confidence 4556665432 12233322 23789999999999999999999999999875
Q ss_pred CccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC-----CceeE--Eee-----cCCcCeeEEEEcCCCCE
Q 005277 410 RKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKL-----NANLV--CYK-----GHNYPVWDVQFNPQGHY 477 (704)
Q Consensus 410 ~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~-----~~~~~--~~~-----~h~~~V~~v~~sp~~~~ 477 (704)
...+....+|.+.|.+++.+||+..+++||.|.+|++||... +.... .++ .-...|.|+.+||||++
T Consensus 444 -~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~ 522 (888)
T KOG0306|consen 444 -ASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL 522 (888)
T ss_pred -hhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE
Confidence 233445568999999999999999999999999999999642 21111 111 23567999999999999
Q ss_pred EEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEec
Q 005277 478 FASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP 557 (704)
Q Consensus 478 l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~sp 557 (704)
++++--|.++++|-+++.+....+.||.-+|.|+..+|+++.++|||.|..|++|-+.=|.|.+.+.+|...|.++.|-|
T Consensus 523 LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P 602 (888)
T KOG0306|consen 523 LAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLP 602 (888)
T ss_pred EEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcc
Confidence 99999999999999999999899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCE
Q 005277 558 DGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSL 637 (704)
Q Consensus 558 dg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 637 (704)
....+.++|.||.|+-||-.....+.++.+|...|++++. +|+|.+
T Consensus 603 ~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav----------------------------------~~~G~~ 648 (888)
T KOG0306|consen 603 KTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAV----------------------------------SPNGSF 648 (888)
T ss_pred cceeEEEecCcceEEeechhhhhhheeeccchheeeeeEE----------------------------------cCCCCe
Confidence 9999999999999999999999999999999999999999 999999
Q ss_pred EEEEeCCCcEEEEeCCCCcc
Q 005277 638 LASGSADCTVKLWDVTTSTK 657 (704)
Q Consensus 638 lasgs~Dg~V~iWd~~~~~~ 657 (704)
++++|.|.+|++|.......
T Consensus 649 vvs~shD~sIRlwE~tde~~ 668 (888)
T KOG0306|consen 649 VVSSSHDKSIRLWERTDEIL 668 (888)
T ss_pred EEeccCCceeEeeeccCcce
Confidence 99999999999999876443
No 86
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.3e-27 Score=247.93 Aligned_cols=239 Identities=22% Similarity=0.397 Sum_probs=212.6
Q ss_pred CCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEe
Q 005277 361 QDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSS 440 (704)
Q Consensus 361 ~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s 440 (704)
|.+++|.+|+.||.|++|++....... .......+..|+..|+.+....+++.|+|+|
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~----------------------s~~~~asme~HsDWVNDiiL~~~~~tlIS~S 92 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEP----------------------STPYIASMEHHSDWVNDIILCGNGKTLISAS 92 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCc----------------------ccchhhhhhhhHhHHhhHHhhcCCCceEEec
Confidence 467889999999999999987522110 0113455778999999999999999999999
Q ss_pred CCCeEEEEeCCCC--ceeEEeecCCcCeeEEEE-cCCCCEEEEEeCCCeEEEEECCCCce----------eEEec-cCCC
Q 005277 441 ADTTIRLWSTKLN--ANLVCYKGHNYPVWDVQF-NPQGHYFASSSHDRTARIWSMDRIQP----------LRIMA-GHLS 506 (704)
Q Consensus 441 ~Dg~I~lwd~~~~--~~~~~~~~h~~~V~~v~~-sp~~~~l~sgs~dg~i~lwd~~~~~~----------~~~~~-~~~~ 506 (704)
.|.+|++|+...+ -+..++..|...|.|++. .++...+|+||-|+.|.+||++++.. ...+. |+..
T Consensus 93 sDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~ 172 (735)
T KOG0308|consen 93 SDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKD 172 (735)
T ss_pred CCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcc
Confidence 9999999999877 578888999999999999 77889999999999999999997622 22233 7888
Q ss_pred CeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeec
Q 005277 507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM 586 (704)
Q Consensus 507 ~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~ 586 (704)
.|.+++.+++|..|++|+..+.+++||.++++.+..+.||...|.++..++||..+++++.||+|++||+...+++.++.
T Consensus 173 siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~ 252 (735)
T KOG0308|consen 173 SIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI 252 (735)
T ss_pred ceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCC
Q 005277 587 GHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTS 655 (704)
Q Consensus 587 ~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~ 655 (704)
.|...||++.. +++=..+++|+.||.|..=|+.+.
T Consensus 253 vH~e~VWaL~~----------------------------------~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 253 VHKEGVWALQS----------------------------------SPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred eccCceEEEee----------------------------------CCCcceEEecCCCCcEEecccCCc
Confidence 99999999988 888889999999999999999885
No 87
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3e-26 Score=242.27 Aligned_cols=268 Identities=24% Similarity=0.349 Sum_probs=229.1
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCC
Q 005277 354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG 433 (704)
Q Consensus 354 V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~ 433 (704)
.+-+.|+ ..+.||+|. ...|.+|+-.... .......+...|+++.|+++|
T Consensus 180 ~nlldWs-s~n~laVal-g~~vylW~~~s~~----------------------------v~~l~~~~~~~vtSv~ws~~G 229 (484)
T KOG0305|consen 180 LNLLDWS-SANVLAVAL-GQSVYLWSASSGS----------------------------VTELCSFGEELVTSVKWSPDG 229 (484)
T ss_pred hhHhhcc-cCCeEEEEe-cceEEEEecCCCc----------------------------eEEeEecCCCceEEEEECCCC
Confidence 3457788 456788774 5579999976521 112222237899999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeEEeec-CCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEE-eccCCCCeeEE
Q 005277 434 DFILSSSADTTIRLWSTKLNANLVCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI-MAGHLSDVDCV 511 (704)
Q Consensus 434 ~~l~s~s~Dg~I~lwd~~~~~~~~~~~~-h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~-~~~~~~~V~~v 511 (704)
.+|++|..+|.|.|||....+.+..+.+ |...|-+++|. +..+.+|+.|+.|..+|++..+.... +.+|...|..+
T Consensus 230 ~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgL 307 (484)
T KOG0305|consen 230 SHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGL 307 (484)
T ss_pred CEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeee
Confidence 9999999999999999999999999998 99999999997 77899999999999999998766555 88999999999
Q ss_pred EEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEec-CCCEEEEEe--CCCeEEEEeCCCCeeeeeecCC
Q 005277 512 RWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP-DGRYMASGD--EDGTIMMWDLASGRCVTPLMGH 588 (704)
Q Consensus 512 ~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~sp-dg~~l~sg~--~dg~I~iwdl~~~~~~~~~~~h 588 (704)
.|+++++++|+|+.|+.+.|||.....+...+..|.+.|.+++|+| ....||+|+ .|++|++||..++..+..+. -
T Consensus 308 kws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-t 386 (484)
T KOG0305|consen 308 KWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-T 386 (484)
T ss_pred EECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-c
Confidence 9999999999999999999999988888999999999999999999 566888865 79999999999999887775 3
Q ss_pred CceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEE--eCCCcEEEEeCCCCccccccccccC
Q 005277 589 TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASG--SADCTVKLWDVTTSTKVLKTEEKSG 666 (704)
Q Consensus 589 ~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasg--s~Dg~V~iWd~~~~~~~~~~~~~~~ 666 (704)
.+.|.++.| ++..+-|+++ ..++.|.||++.+.
T Consensus 387 gsQVcsL~W----------------------------------sk~~kEi~sthG~s~n~i~lw~~ps~----------- 421 (484)
T KOG0305|consen 387 GSQVCSLIW----------------------------------SKKYKELLSTHGYSENQITLWKYPSM----------- 421 (484)
T ss_pred CCceeeEEE----------------------------------cCCCCEEEEecCCCCCcEEEEecccc-----------
Confidence 568999999 8887655544 46789999999874
Q ss_pred ccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 667 TNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 667 ~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
..+..+.+|...|..+++||||..+++|+.|.|
T Consensus 422 ----~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DET 454 (484)
T KOG0305|consen 422 ----KLVAELLGHTSRVLYLALSPDGETIVTGAADET 454 (484)
T ss_pred ----ceeeeecCCcceeEEEEECCCCCEEEEecccCc
Confidence 346788899999999999999999999999976
No 88
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.1e-26 Score=249.12 Aligned_cols=239 Identities=24% Similarity=0.408 Sum_probs=192.8
Q ss_pred eecc-CCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC-----------------------------------------
Q 005277 415 TLYQ-GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKL----------------------------------------- 452 (704)
Q Consensus 415 ~~~~-~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~----------------------------------------- 452 (704)
+.+. +|.+.|.++.||+||+|||+|+.||.|+||.+..
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 3445 8999999999999999999999999999998654
Q ss_pred -------------------CceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEE
Q 005277 453 -------------------NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRW 513 (704)
Q Consensus 453 -------------------~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~ 513 (704)
.+++..|.||.+.|.++.|+. .++|++++.|++|+||++....++..|. |.+-|+||+|
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaF 417 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAF 417 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEe
Confidence 012244678999999999995 4589999999999999999999999987 9999999999
Q ss_pred cC-CCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecC--C--
Q 005277 514 HI-NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG--H-- 588 (704)
Q Consensus 514 ~p-~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~--h-- 588 (704)
+| |.+|+++|+-||.||||++...+.+.... -..-|++++|+|||++.++|+.+|.+++|+....+.+..+.- |
T Consensus 418 nPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~ 496 (712)
T KOG0283|consen 418 NPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNK 496 (712)
T ss_pred cccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccC
Confidence 99 78999999999999999998877766554 447899999999999999999999999999988776654421 1
Q ss_pred ----CceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccc
Q 005277 589 ----TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEK 664 (704)
Q Consensus 589 ----~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~ 664 (704)
...|+.+.|. ..+...|++.++|..|||+|......+.++.
T Consensus 497 Kk~~~~rITG~Q~~---------------------------------p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfK-- 541 (712)
T KOG0283|consen 497 KKKQGKRITGLQFF---------------------------------PGDPDEVLVTSNDSRIRIYDGRDKDLVHKFK-- 541 (712)
T ss_pred ccccCceeeeeEec---------------------------------CCCCCeEEEecCCCceEEEeccchhhhhhhc--
Confidence 2278888872 2233467888899999999997765443322
Q ss_pred cCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277 665 SGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 702 (704)
Q Consensus 665 ~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg 702 (704)
-+....+ -...+|+.||+++++|+.|.
T Consensus 542 ----------G~~n~~S-Q~~Asfs~Dgk~IVs~seDs 568 (712)
T KOG0283|consen 542 ----------GFRNTSS-QISASFSSDGKHIVSASEDS 568 (712)
T ss_pred ----------ccccCCc-ceeeeEccCCCEEEEeecCc
Confidence 1222222 34568999999999999764
No 89
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=4.8e-27 Score=226.44 Aligned_cols=242 Identities=28% Similarity=0.397 Sum_probs=216.7
Q ss_pred EeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeecc-CCccCeE
Q 005277 347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ-GHSGPVY 425 (704)
Q Consensus 347 ~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~ 425 (704)
|.-+.+.|.|+.||.|...||+|+.||.|+||.+.++ .+.+.+. +|+..|+
T Consensus 259 fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG----------------------------~ClRrFdrAHtkGvt 310 (508)
T KOG0275|consen 259 FMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETG----------------------------QCLRRFDRAHTKGVT 310 (508)
T ss_pred eeecccceEEEeecccHHHhhccCcCCcEEEEEEecc----------------------------hHHHHhhhhhccCee
Confidence 5567889999999999999999999999999999873 3334443 8999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc--
Q 005277 426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG-- 503 (704)
Q Consensus 426 ~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~-- 503 (704)
|+.|+.|+..+++++.|.++++.-+.+|+++..+++|.+.|+...|.++|+++++++.||+|++|+..+.+++.+|..
T Consensus 311 ~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~ 390 (508)
T KOG0275|consen 311 CLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLG 390 (508)
T ss_pred EEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988874
Q ss_pred CCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCCcEEEEeec---CCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCC
Q 005277 504 HLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIG---HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579 (704)
Q Consensus 504 ~~~~V~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~---h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~ 579 (704)
...+|.++-.-| +...++++....+|++.++ .|+.++.|.. ..+...+.+.||.|.++++.++|+.++.+...+|
T Consensus 391 ~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG 469 (508)
T KOG0275|consen 391 TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSG 469 (508)
T ss_pred CcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecC
Confidence 445677777666 5678888889999999997 5788888853 2356778889999999999999999999999999
Q ss_pred eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEe
Q 005277 580 RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWD 651 (704)
Q Consensus 580 ~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd 651 (704)
+...++..|...|..++- +|..+.+|+-+.||.+++|.
T Consensus 470 ~LE~tl~VhEkdvIGl~H----------------------------------HPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 470 KLERTLPVHEKDVIGLTH----------------------------------HPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ceeeeeeccccccccccc----------------------------------CcccchhhhhcccchhhhcC
Confidence 999999999998888887 99999999999999999995
No 90
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=8.6e-26 Score=213.30 Aligned_cols=235 Identities=28% Similarity=0.380 Sum_probs=210.4
Q ss_pred eccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 005277 416 LYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI 495 (704)
Q Consensus 416 ~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~ 495 (704)
.++||..+++.+.++.+|.+|++|+.|.++.+|-...|+.+.+|.+|++.||++..+.+.+++++|+.|.++++||+.++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 46799999999999999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred ceeEEeccCCCCeeEEEEcCCCCEEEEEEC-----CCcEEEEeCC-------CCcEEEEeecCCCCEEEEEEecCCCEEE
Q 005277 496 QPLRIMAGHLSDVDCVRWHINCNYIATGSS-----DKTVRLWDVS-------SGECVRIFIGHRSMILSLAMSPDGRYMA 563 (704)
Q Consensus 496 ~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~-----dg~I~iwd~~-------~~~~~~~~~~h~~~i~~l~~spdg~~l~ 563 (704)
+.+..+. ...+|..+.|+++|++++.... .+.|.++|++ ...++..+..+...++.+-|.|-+++|+
T Consensus 85 k~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii 163 (327)
T KOG0643|consen 85 KQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETII 163 (327)
T ss_pred cEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEE
Confidence 9998887 5688999999999999888764 3679999998 4566778888889999999999999999
Q ss_pred EEeCCCeEEEEeCCCC-eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEe
Q 005277 564 SGDEDGTIMMWDLASG-RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGS 642 (704)
Q Consensus 564 sg~~dg~I~iwdl~~~-~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs 642 (704)
+|..||.|.+||+++| +.+.....|...|+.+.+ +++..++++|+
T Consensus 164 ~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~----------------------------------s~d~T~FiT~s 209 (327)
T KOG0643|consen 164 AGHEDGSISIYDARTGKELVDSDEEHSSKINDLQF----------------------------------SRDRTYFITGS 209 (327)
T ss_pred EecCCCcEEEEEcccCceeeechhhhccccccccc----------------------------------cCCcceEEecc
Confidence 9999999999999998 455666889999999999 99999999999
Q ss_pred CCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecC
Q 005277 643 ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS 701 (704)
Q Consensus 643 ~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~d 701 (704)
.|.+-++||+.+-.. +.++. ...||++.+++|-...++.|+..
T Consensus 210 ~Dttakl~D~~tl~v---------------~Kty~-te~PvN~aaisP~~d~VilgGGq 252 (327)
T KOG0643|consen 210 KDTTAKLVDVRTLEV---------------LKTYT-TERPVNTAAISPLLDHVILGGGQ 252 (327)
T ss_pred cCccceeeeccceee---------------EEEee-ecccccceecccccceEEecCCc
Confidence 999999999988543 44443 46799999999988777776643
No 91
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=2e-25 Score=215.43 Aligned_cols=267 Identities=19% Similarity=0.271 Sum_probs=217.2
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEc
Q 005277 351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (704)
Q Consensus 351 ~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 430 (704)
.+.|+++.|+|.++.|++++.||++++|++... .......|..++.+++|.
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~-----------------------------~l~~~~~~~~plL~c~F~ 63 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN-----------------------------SLKLKFKHGAPLLDCAFA 63 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccch-----------------------------hhhhheecCCceeeeecc
Confidence 568999999999999999999999999998752 222334588999999999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeE
Q 005277 431 PLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDC 510 (704)
Q Consensus 431 p~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~ 510 (704)
+ ...+++|+.||.|+.+|+.++.... +..|..+|.+|.+++....+++||+|++|++||.+.......+.. ...|.|
T Consensus 64 d-~~~~~~G~~dg~vr~~Dln~~~~~~-igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~ 140 (323)
T KOG1036|consen 64 D-ESTIVTGGLDGQVRRYDLNTGNEDQ-IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYC 140 (323)
T ss_pred C-CceEEEeccCceEEEEEecCCccee-eccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEE
Confidence 7 4568999999999999999776544 556999999999999888999999999999999997555555543 347877
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEe--ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCC----eeeee
Q 005277 511 VRWHINCNYIATGSSDKTVRLWDVSSGECVRIF--IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG----RCVTP 584 (704)
Q Consensus 511 v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~--~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~----~~~~~ 584 (704)
+.. .++.|++|+.+..|.+||+++....... ..-+-.+.|+++-|++.-.++++-||.|.+=.+... +.-..
T Consensus 141 ~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkya 218 (323)
T KOG1036|consen 141 MDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYA 218 (323)
T ss_pred Eec--cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhcee
Confidence 764 5789999999999999999986544322 133457999999999888999999999998776655 33344
Q ss_pred ecCCC---------ceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCC
Q 005277 585 LMGHT---------SCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTS 655 (704)
Q Consensus 585 ~~~h~---------~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~ 655 (704)
++.|. -+|.+++| +|-...|||||.||.|.+||..+.
T Consensus 219 FkCHr~~~~~~~~~yPVNai~F----------------------------------hp~~~tfaTgGsDG~V~~Wd~~~r 264 (323)
T KOG1036|consen 219 FKCHRLSEKDTEIIYPVNAIAF----------------------------------HPIHGTFATGGSDGIVNIWDLFNR 264 (323)
T ss_pred EEeeecccCCceEEEEeceeEe----------------------------------ccccceEEecCCCceEEEccCcch
Confidence 55554 26777777 888889999999999999999886
Q ss_pred ccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeec
Q 005277 656 TKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL 700 (704)
Q Consensus 656 ~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~ 700 (704)
+. +..+....+.|.+++|+.+|.+||+|+.
T Consensus 265 Kr---------------l~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 265 KR---------------LKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred hh---------------hhhccCCCCceEEEEeccCCCeEEEEec
Confidence 54 5566666788999999999999999875
No 92
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=3e-26 Score=215.82 Aligned_cols=237 Identities=23% Similarity=0.348 Sum_probs=209.6
Q ss_pred eeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE--EeecCCcCeeEEEEcC-CCCEEEEEeCCCeEEEEE
Q 005277 415 TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV--CYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWS 491 (704)
Q Consensus 415 ~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~--~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~lwd 491 (704)
+.+++|.+.|.+++|+-+|..|++|+.|+++.+|+++...... .+++|...|-.++|+| +...|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 5577899999999999999999999999999999998775443 4578999999999998 677899999999999999
Q ss_pred CCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeE
Q 005277 492 MDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTI 571 (704)
Q Consensus 492 ~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I 571 (704)
++.++++......... .-+.|+|+|.++++|+.|..|...|.++.+.+.... ....+..++|+-++.+++....-|+|
T Consensus 94 ~r~~k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v 171 (313)
T KOG1407|consen 94 IRSGKCTARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCV 171 (313)
T ss_pred eccCcEEEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceE
Confidence 9999999887755444 457899999999999999999999999988776653 45567889999888888877778999
Q ss_pred EEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEe
Q 005277 572 MMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWD 651 (704)
Q Consensus 572 ~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd 651 (704)
.|.....-+++..+++|.....++.| +|+|+++|+|+.|-.+.+||
T Consensus 172 ~ILsypsLkpv~si~AH~snCicI~f----------------------------------~p~GryfA~GsADAlvSLWD 217 (313)
T KOG1407|consen 172 EILSYPSLKPVQSIKAHPSNCICIEF----------------------------------DPDGRYFATGSADALVSLWD 217 (313)
T ss_pred EEEeccccccccccccCCcceEEEEE----------------------------------CCCCceEeeccccceeeccC
Confidence 99999999999999999999999999 99999999999999999999
Q ss_pred CCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277 652 VTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 702 (704)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg 702 (704)
+..- -++..+..+.-||..++||.+|++||+||.|-
T Consensus 218 ~~EL---------------iC~R~isRldwpVRTlSFS~dg~~lASaSEDh 253 (313)
T KOG1407|consen 218 VDEL---------------ICERCISRLDWPVRTLSFSHDGRMLASASEDH 253 (313)
T ss_pred hhHh---------------hhheeeccccCceEEEEeccCcceeeccCccc
Confidence 9763 45667778899999999999999999999873
No 93
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=3.5e-25 Score=243.75 Aligned_cols=223 Identities=20% Similarity=0.307 Sum_probs=180.8
Q ss_pred EeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCC-CCEEEEEeCCCeEEEEECCCCc--------eeEEeccCCCCee
Q 005277 439 SSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRIQ--------PLRIMAGHLSDVD 509 (704)
Q Consensus 439 ~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~-~~~l~sgs~dg~i~lwd~~~~~--------~~~~~~~~~~~V~ 509 (704)
|+.++.|++|+......+..+.+|..+|++++|+|+ +.+|++|+.||+|++||+.+.. ++..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 677899999999888888889999999999999996 7899999999999999997532 3456788999999
Q ss_pred EEEEcCCCCE-EEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCC
Q 005277 510 CVRWHINCNY-IATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588 (704)
Q Consensus 510 ~v~~~p~~~~-l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h 588 (704)
+++|||++.. |++|+.|++|++||+++++.+..+. |...|.+++|+|+|.+|++++.|+.|+|||+++++.+..+.+|
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH 208 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH 208 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence 9999998875 4789999999999999998877775 6678999999999999999999999999999999999999999
Q ss_pred CceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCC----cEEEEeCCCCccccccccc
Q 005277 589 TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADC----TVKLWDVTTSTKVLKTEEK 664 (704)
Q Consensus 589 ~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg----~V~iWd~~~~~~~~~~~~~ 664 (704)
.+.+.+..+. ...+++++.+|+++|.|+ .|+|||+.......
T Consensus 209 ~g~~~s~~v~-----------------------------~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl----- 254 (568)
T PTZ00420 209 DGGKNTKNIW-----------------------------IDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSAL----- 254 (568)
T ss_pred cCCceeEEEE-----------------------------eeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCce-----
Confidence 8765443320 011167888999988774 79999998643211
Q ss_pred cCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 665 SGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 665 ~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
....+..+.+.+......++|.++++|+.|++
T Consensus 255 -------~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~t 286 (568)
T PTZ00420 255 -------VTMSIDNASAPLIPHYDESTGLIYLIGKGDGN 286 (568)
T ss_pred -------EEEEecCCccceEEeeeCCCCCEEEEEECCCe
Confidence 11233344455555556677999999998875
No 94
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=1e-25 Score=237.50 Aligned_cols=271 Identities=23% Similarity=0.424 Sum_probs=227.2
Q ss_pred EEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCe
Q 005277 345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (704)
Q Consensus 345 ~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 424 (704)
..+.+|...|..+++.++. ++++|+.||++++|+-... .......+.+|.+-|
T Consensus 8 ~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~--------------------------~~l~~~~~~~~~g~i 60 (745)
T KOG0301|consen 8 HELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGK--------------------------QYLETHAFEGPKGFI 60 (745)
T ss_pred EEeccCccchheeEecCCe-EEeecCCCCceeeeeccCc--------------------------ccccceecccCccee
Confidence 3578899999888876554 7899999999999985431 122334566788877
Q ss_pred EE-EEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec
Q 005277 425 YS-ASFSP-LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA 502 (704)
Q Consensus 425 ~~-l~~sp-~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~ 502 (704)
.. +++.+ ++-.|++|+.|++|.+|......+...+++|...|++++...++. +++||+|.++++|.... ....+.
T Consensus 61 ~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~--l~~~l~ 137 (745)
T KOG0301|consen 61 ANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE--LVYSLQ 137 (745)
T ss_pred eccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchh--hhcccC
Confidence 77 88876 344599999999999999999999999999999999999887887 99999999999998754 555689
Q ss_pred cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeee
Q 005277 503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582 (704)
Q Consensus 503 ~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~ 582 (704)
+|...|+++..-|.+ .++|||.|.+|++|. .++++++|.+|.+.|+.+++-+++. +++++.||.|+.|++ +|.++
T Consensus 138 gH~asVWAv~~l~e~-~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l 212 (745)
T KOG0301|consen 138 GHTASVWAVASLPEN-TYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVL 212 (745)
T ss_pred CcchheeeeeecCCC-cEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCcee
Confidence 999999999998887 899999999999996 4889999999999999999997754 678999999999998 88999
Q ss_pred eeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccc
Q 005277 583 TPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTE 662 (704)
Q Consensus 583 ~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~ 662 (704)
..+.+|+.-|++++. ..++..++++|+|++++||+....
T Consensus 213 ~~~~ghtn~vYsis~----------------------------------~~~~~~Ivs~gEDrtlriW~~~e~------- 251 (745)
T KOG0301|consen 213 LEMHGHTNFVYSISM----------------------------------ALSDGLIVSTGEDRTLRIWKKDEC------- 251 (745)
T ss_pred eeeeccceEEEEEEe----------------------------------cCCCCeEEEecCCceEEEeecCce-------
Confidence 999999999999997 778889999999999999998731
Q ss_pred cccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277 663 EKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 702 (704)
Q Consensus 663 ~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg 702 (704)
...+....+.|.++.+-++|.+ ++|+.||
T Consensus 252 ----------~q~I~lPttsiWsa~~L~NgDI-vvg~SDG 280 (745)
T KOG0301|consen 252 ----------VQVITLPTTSIWSAKVLLNGDI-VVGGSDG 280 (745)
T ss_pred ----------EEEEecCccceEEEEEeeCCCE-EEeccCc
Confidence 2233333457999999888875 4566665
No 95
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.94 E-value=1.2e-26 Score=216.93 Aligned_cols=247 Identities=21% Similarity=0.351 Sum_probs=219.7
Q ss_pred EEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCe
Q 005277 345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (704)
Q Consensus 345 ~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 424 (704)
-||.+|.+.|.+..++.+....|++..|=+-+|||.-++. ... -..|..-|
T Consensus 53 gtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgd----------------------------elh-sf~hkhiv 103 (334)
T KOG0278|consen 53 GTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGD----------------------------ELH-SFEHKHIV 103 (334)
T ss_pred EeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhh----------------------------hhh-hhhhhhee
Confidence 4789999999999999999999999999999999976521 111 12488889
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-eeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc
Q 005277 425 YSASFSPLGDFILSSSADTTIRLWSTKLNA-NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG 503 (704)
Q Consensus 425 ~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~-~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~ 503 (704)
.+++|+.|.++|++|+.+..+||+|++..+ +...+.+|.+.|..+-|+...+.|++++.|++||+||.+++..++.+.
T Consensus 104 k~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~- 182 (334)
T KOG0278|consen 104 KAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE- 182 (334)
T ss_pred eeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-
Confidence 999999999999999999999999998654 467788999999999999999999999999999999999999998887
Q ss_pred CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeee
Q 005277 504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583 (704)
Q Consensus 504 ~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~ 583 (704)
...+|+++..+++|.+|.++ ..++|.+||..+-..+..+. -...|.+...+|+...+++|+.|+.++.||..++..+.
T Consensus 183 ~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~ 260 (334)
T KOG0278|consen 183 FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIG 260 (334)
T ss_pred cCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCceee
Confidence 56889999999999888776 46789999999988888774 34568999999999999999999999999999999888
Q ss_pred ee-cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcc
Q 005277 584 PL-MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTK 657 (704)
Q Consensus 584 ~~-~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~ 657 (704)
.+ ++|.++|.++.| +|+|...++||.||+|++|.+..++.
T Consensus 261 ~~nkgh~gpVhcVrF----------------------------------SPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 261 SYNKGHFGPVHCVRF----------------------------------SPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred ecccCCCCceEEEEE----------------------------------CCCCceeeccCCCceEEEEEecCCCc
Confidence 86 899999999999 99999999999999999999887654
No 96
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=9.9e-25 Score=200.97 Aligned_cols=258 Identities=23% Similarity=0.328 Sum_probs=214.5
Q ss_pred CCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeec
Q 005277 338 ALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY 417 (704)
Q Consensus 338 ~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (704)
..|++.+..-..|.+.|.|.+|||+|.+||+|+.|.+|++.-++...+..+ ..-..+
T Consensus 76 ~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~-----------------------g~dle~ 132 (350)
T KOG0641|consen 76 QPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNAT-----------------------GHDLEF 132 (350)
T ss_pred CCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEeccccccccc-----------------------Ccceee
Confidence 446777777778889999999999999999999999999987765322221 111335
Q ss_pred cCCccCeEEEEEcCC----CCEEEEEe-CCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 005277 418 QGHSGPVYSASFSPL----GDFILSSS-ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM 492 (704)
Q Consensus 418 ~~h~~~V~~l~~sp~----~~~l~s~s-~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~ 492 (704)
.-|.+.|..++|..+ +..|++++ .|..|.+-|..+++....+.+|++.|.++ ++.+|-+|++|+.|.+|++||+
T Consensus 133 nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdl 211 (350)
T KOG0641|consen 133 NMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDL 211 (350)
T ss_pred eecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEee
Confidence 569999999999654 34666554 57778888999999999999999999776 3447899999999999999999
Q ss_pred CCCceeEEecc--C-----CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEE
Q 005277 493 DRIQPLRIMAG--H-----LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG 565 (704)
Q Consensus 493 ~~~~~~~~~~~--~-----~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg 565 (704)
+-..++..+.. | .+.|.+++..|.|++|++|-.|.++.+||++.++.++.|..|...|.|+.|||...|+.++
T Consensus 212 rv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~ 291 (350)
T KOG0641|consen 212 RVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTC 291 (350)
T ss_pred eccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEe
Confidence 98888877642 1 2578999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCeEEEEeCCCC----eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEE
Q 005277 566 DEDGTIMMWDLASG----RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASG 641 (704)
Q Consensus 566 ~~dg~I~iwdl~~~----~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasg 641 (704)
+.|..|++-|+... -++.....|...+..+.| +|..--+++.
T Consensus 292 syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rw----------------------------------h~~d~sfiss 337 (350)
T KOG0641|consen 292 SYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRW----------------------------------HPQDFSFISS 337 (350)
T ss_pred cccceEEEeecccchhhcCceEEEEeccCceEEEEe----------------------------------cCccceeeec
Confidence 99999999998632 223344568888888889 8888889999
Q ss_pred eCCCcEEEEeCC
Q 005277 642 SADCTVKLWDVT 653 (704)
Q Consensus 642 s~Dg~V~iWd~~ 653 (704)
+.|.++.+|-+.
T Consensus 338 sadkt~tlwa~~ 349 (350)
T KOG0641|consen 338 SADKTATLWALN 349 (350)
T ss_pred cCcceEEEeccC
Confidence 999999999764
No 97
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=2e-27 Score=251.03 Aligned_cols=236 Identities=27% Similarity=0.544 Sum_probs=218.4
Q ss_pred ccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 005277 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ 496 (704)
Q Consensus 417 ~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~ 496 (704)
+..|+..|.++..-..++.+++|+.|..+-+|.+.....+..+.+|..+|.++.|++...++++|+.+|+|++||++..+
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk 103 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK 103 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh
Confidence 44688889888887778899999999999999999888888899999999999999999999999999999999999999
Q ss_pred eeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 005277 497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576 (704)
Q Consensus 497 ~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl 576 (704)
.++.+.+|...+..+.|||-+.+.+.|+.|+.+.+||++...|...+.+|...+.++.|+|+|+|+++|++|..++|||+
T Consensus 104 ~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~ 183 (825)
T KOG0267|consen 104 IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDL 183 (825)
T ss_pred hhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecc
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred CCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCc
Q 005277 577 ASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTST 656 (704)
Q Consensus 577 ~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~ 656 (704)
..|+.+..|..|.+.+.++.| +|..-++++||.|++|++||+++-.
T Consensus 184 ~agk~~~ef~~~e~~v~sle~----------------------------------hp~e~Lla~Gs~d~tv~f~dletfe 229 (825)
T KOG0267|consen 184 TAGKLSKEFKSHEGKVQSLEF----------------------------------HPLEVLLAPGSSDRTVRFWDLETFE 229 (825)
T ss_pred ccccccccccccccccccccc----------------------------------CchhhhhccCCCCceeeeeccceeE
Confidence 999999999999999999998 8999999999999999999998754
Q ss_pred cccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecC
Q 005277 657 KVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS 701 (704)
Q Consensus 657 ~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~d 701 (704)
. +....+....|.++.|+|++..+.+|...
T Consensus 230 ~---------------I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 230 V---------------ISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred E---------------eeccCCccCCceeeeecCCceeeecCchh
Confidence 3 33444557789999999999999988654
No 98
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=8.1e-26 Score=229.37 Aligned_cols=279 Identities=20% Similarity=0.368 Sum_probs=231.6
Q ss_pred EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeecc--CCccC
Q 005277 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ--GHSGP 423 (704)
Q Consensus 346 ~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~ 423 (704)
..++|..-|.++++|...+.+.+|+ .|.|+|||+...+... .+..+. ....-
T Consensus 414 ~tL~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~-------------------------PvsqLdcl~rdny 467 (705)
T KOG0639|consen 414 NTLAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKS-------------------------PVSQLDCLNRDNY 467 (705)
T ss_pred hhhccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCC-------------------------ccccccccCcccc
Confidence 3457777888999999999999996 7889999998632111 111111 12356
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE--eecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe
Q 005277 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVC--YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM 501 (704)
Q Consensus 424 V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~--~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~ 501 (704)
|.++..+|||+.|++|+.-.++.|||+........ +....-.+..++.+||.+..++++.||.|.|||+.+...++.|
T Consensus 468 iRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqf 547 (705)
T KOG0639|consen 468 IRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQF 547 (705)
T ss_pred eeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecc
Confidence 88999999999999999999999999987655433 2233345778999999999999999999999999999999999
Q ss_pred ccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCee
Q 005277 502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC 581 (704)
Q Consensus 502 ~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~ 581 (704)
.+|.+.+.||..+++|..|.||+-|.+||.||+++++.+... .....|.++..+|++.||++|-.++.+.|..... ..
T Consensus 548 qGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqh-dF~SQIfSLg~cP~~dWlavGMens~vevlh~sk-p~ 625 (705)
T KOG0639|consen 548 QGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQH-DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK-PE 625 (705)
T ss_pred cCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhh-hhhhhheecccCCCccceeeecccCcEEEEecCC-cc
Confidence 999999999999999999999999999999999999876543 3467899999999999999999999998887543 33
Q ss_pred eeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccccc
Q 005277 582 VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKT 661 (704)
Q Consensus 582 ~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~ 661 (704)
...+..|.++|.++.| .+.|+++++.|.|+-+..|...-+..+...
T Consensus 626 kyqlhlheScVLSlKF----------------------------------a~cGkwfvStGkDnlLnawrtPyGasiFqs 671 (705)
T KOG0639|consen 626 KYQLHLHESCVLSLKF----------------------------------AYCGKWFVSTGKDNLLNAWRTPYGASIFQS 671 (705)
T ss_pred ceeecccccEEEEEEe----------------------------------cccCceeeecCchhhhhhccCccccceeec
Confidence 4556779999999999 999999999999999999999887654222
Q ss_pred ccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277 662 EEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 702 (704)
Q Consensus 662 ~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg 702 (704)
...++|.+...|.|++++++|+.|+
T Consensus 672 ----------------kE~SsVlsCDIS~ddkyIVTGSGdk 696 (705)
T KOG0639|consen 672 ----------------KESSSVLSCDISFDDKYIVTGSGDK 696 (705)
T ss_pred ----------------cccCcceeeeeccCceEEEecCCCc
Confidence 2357899999999999999999884
No 99
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=3.6e-25 Score=221.66 Aligned_cols=247 Identities=21% Similarity=0.355 Sum_probs=217.2
Q ss_pred EEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC
Q 005277 344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (704)
Q Consensus 344 ~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 423 (704)
+.++.+|.-.|+.+.|+|+...+++++.|..|+||..... ........|.++
T Consensus 254 l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~----------------------------s~~~~~~~h~~~ 305 (506)
T KOG0289|consen 254 LATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS----------------------------SEPTSSRPHEEP 305 (506)
T ss_pred hhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc----------------------------cCcccccccccc
Confidence 4468899999999999999999999999999999997641 233456679999
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeec--CCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe
Q 005277 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG--HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM 501 (704)
Q Consensus 424 V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~--h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~ 501 (704)
|+.+..+|.|.||++++.||+..+.|++++.++..... ..-.+++.+|+|||..|.+|..||.+++||+..+..+..|
T Consensus 306 V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~F 385 (506)
T KOG0289|consen 306 VTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKF 385 (506)
T ss_pred ceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccC
Confidence 99999999999999999999999999999998776653 2345899999999999999999999999999999999999
Q ss_pred ccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecC-CCCEEEEEEecCCCEEEEEeCCCeEEEEeCC--C
Q 005277 502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH-RSMILSLAMSPDGRYMASGDEDGTIMMWDLA--S 578 (704)
Q Consensus 502 ~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h-~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~--~ 578 (704)
.+|.++|..++|+.||-||++++.|+.|++||+|.-+...++.-. ...+.++.|.+.|.+|+.++.|=.|++++-. +
T Consensus 386 pght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~ 465 (506)
T KOG0289|consen 386 PGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKS 465 (506)
T ss_pred CCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEeccccc
Confidence 999999999999999999999999999999999988877777543 2379999999999999999888777777633 5
Q ss_pred CeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeC
Q 005277 579 GRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDV 652 (704)
Q Consensus 579 ~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~ 652 (704)
+..+..+..|.+..+.+.| .....+++++|.|..++++.+
T Consensus 466 W~~~~~~~~~sg~st~v~F----------------------------------g~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 466 WTEIKELADHSGLSTGVRF----------------------------------GEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ceeeehhhhcccccceeee----------------------------------cccceEEeeccchhheEEeec
Confidence 6788888889988899988 778889999999999988764
No 100
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=1e-25 Score=224.50 Aligned_cols=257 Identities=22% Similarity=0.333 Sum_probs=219.2
Q ss_pred cCeEeecCCCCCCeE-EEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCC
Q 005277 329 RNRVHLSSAALPSVS-FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP 407 (704)
Q Consensus 329 ~~~~~l~~~~~p~~~-~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (704)
...|++|........ .-++.+..++|+++.|.++++.+++++.|+.+++|+++.
T Consensus 196 Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~------------------------- 250 (459)
T KOG0288|consen 196 DRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDS------------------------- 250 (459)
T ss_pred hhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccc-------------------------
Confidence 345566654433322 234567778899999999999999999999999999876
Q ss_pred CCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeE
Q 005277 408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTA 487 (704)
Q Consensus 408 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i 487 (704)
.+...++.||++.|+++.|......+++|+.|.+|++||+....|..++.. ...+.+|..+ +..+++|-.|++|
T Consensus 251 ---~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~Dkkv 324 (459)
T KOG0288|consen 251 ---LRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS--ISDVISGHFDKKV 324 (459)
T ss_pred ---hhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-cccccceEec--ceeeeecccccce
Confidence 456677889999999999998777799999999999999999888777653 4456677765 6679999999999
Q ss_pred EEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecC----CCCEEEEEEecCCCEEE
Q 005277 488 RIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH----RSMILSLAMSPDGRYMA 563 (704)
Q Consensus 488 ~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h----~~~i~~l~~spdg~~l~ 563 (704)
++||.+...+.+....+. .|+++..++++..|.+.+.|.++.+.|+++......+... ....+.+.|||++.|++
T Consensus 325 RfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Yva 403 (459)
T KOG0288|consen 325 RFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVA 403 (459)
T ss_pred EEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceee
Confidence 999999999999988764 9999999999999999999999999999999888777532 23478899999999999
Q ss_pred EEeCCCeEEEEeCCCCeeeeeecCCCc--eeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEE
Q 005277 564 SGDEDGTIMMWDLASGRCVTPLMGHTS--CVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASG 641 (704)
Q Consensus 564 sg~~dg~I~iwdl~~~~~~~~~~~h~~--~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasg 641 (704)
+|+.||.|+||++.++++...+..... .|+++.| +|.|..++++
T Consensus 404 AGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W----------------------------------~~sG~~Llsa 449 (459)
T KOG0288|consen 404 AGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSW----------------------------------NPSGSGLLSA 449 (459)
T ss_pred eccCCCcEEEEEccCceEEEEeccCCCCcceEEEEE----------------------------------cCCCchhhcc
Confidence 999999999999999999988876554 5999999 9999999999
Q ss_pred eCCCcEEEEe
Q 005277 642 SADCTVKLWD 651 (704)
Q Consensus 642 s~Dg~V~iWd 651 (704)
+.++.+.+|.
T Consensus 450 dk~~~v~lW~ 459 (459)
T KOG0288|consen 450 DKQKAVTLWT 459 (459)
T ss_pred cCCcceEecC
Confidence 9999999993
No 101
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=4.2e-25 Score=206.20 Aligned_cols=248 Identities=24% Similarity=0.449 Sum_probs=205.3
Q ss_pred eeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEE
Q 005277 348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA 427 (704)
Q Consensus 348 ~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 427 (704)
..|.+.|..+...--|+.||++++|++|+|+.+.... .......+.||++||..+
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~-------------------------~s~ll~~L~Gh~GPVwqv 62 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNG-------------------------QSKLLAELTGHSGPVWKV 62 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCC-------------------------CceeeeEecCCCCCeeEE
Confidence 4577778888877789999999999999999987522 135667899999999999
Q ss_pred EEcC--CCCEEEEEeCCCeEEEEeCCCCc--eeEEeecCCcCeeEEEEcCC--CCEEEEEeCCCeEEEEECCCC---cee
Q 005277 428 SFSP--LGDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQ--GHYFASSSHDRTARIWSMDRI---QPL 498 (704)
Q Consensus 428 ~~sp--~~~~l~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~v~~sp~--~~~l~sgs~dg~i~lwd~~~~---~~~ 498 (704)
+|.. .|.+|++|+.||.|.||.-..++ ....+..|...|++|+|.|+ |-.|++++.||.|.+.+.+.. ...
T Consensus 63 ~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ 142 (299)
T KOG1332|consen 63 AWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTS 142 (299)
T ss_pred eecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccch
Confidence 9976 78999999999999999988763 34556689999999999995 667999999999999998764 234
Q ss_pred EEeccCCCCeeEEEEcCC---C-----------CEEEEEECCCcEEEEeCCCCc--EEEEeecCCCCEEEEEEecCC---
Q 005277 499 RIMAGHLSDVDCVRWHIN---C-----------NYIATGSSDKTVRLWDVSSGE--CVRIFIGHRSMILSLAMSPDG--- 559 (704)
Q Consensus 499 ~~~~~~~~~V~~v~~~p~---~-----------~~l~tgs~dg~I~iwd~~~~~--~~~~~~~h~~~i~~l~~spdg--- 559 (704)
++...|.-.|++++|.|. | +.|++|+.|..|+||+..++. .-+.+.+|.+.|+.++|.|.-
T Consensus 143 ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~ 222 (299)
T KOG1332|consen 143 KIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLP 222 (299)
T ss_pred hhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCC
Confidence 556789999999999985 4 569999999999999998763 334578999999999999953
Q ss_pred -CEEEEEeCCCeEEEEeCCCC---eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCC
Q 005277 560 -RYMASGDEDGTIMMWDLASG---RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEG 635 (704)
Q Consensus 560 -~~l~sg~~dg~I~iwdl~~~---~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g 635 (704)
.+|++++.||++.||-.+.. -....+......++.++| |..|
T Consensus 223 ~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSW----------------------------------S~sG 268 (299)
T KOG1332|consen 223 KSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSW----------------------------------SLSG 268 (299)
T ss_pred ceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEE----------------------------------eccc
Confidence 58999999999999986622 112233445678999999 9999
Q ss_pred CEEEEEeCCCcEEEEeCCC
Q 005277 636 SLLASGSADCTVKLWDVTT 654 (704)
Q Consensus 636 ~~lasgs~Dg~V~iWd~~~ 654 (704)
++|++++.|+.|.+|.-..
T Consensus 269 n~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 269 NILAVSGGDNKVTLWKENV 287 (299)
T ss_pred cEEEEecCCcEEEEEEeCC
Confidence 9999999999999997554
No 102
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.93 E-value=7.6e-25 Score=210.54 Aligned_cols=253 Identities=22% Similarity=0.425 Sum_probs=211.9
Q ss_pred CeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCC
Q 005277 341 SVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH 420 (704)
Q Consensus 341 ~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 420 (704)
.....|+..|-+.|+++.|+|...+|++|+.|++|++||+.+... ++..+.+ ..
T Consensus 162 hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~sa-------------------------KrA~K~~-qd 215 (430)
T KOG0640|consen 162 HPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSA-------------------------KRAFKVF-QD 215 (430)
T ss_pred CceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHH-------------------------HHHHHHh-hc
Confidence 344568899999999999999999999999999999999875211 1122222 24
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEe---ecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 005277 421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY---KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP 497 (704)
Q Consensus 421 ~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~---~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~ 497 (704)
..+|.+++|+|.|.+|+.|....++++||+++.++...- ..|++.|+++.+++.|++.++|+.||.|++||--..++
T Consensus 216 ~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rC 295 (430)
T KOG0640|consen 216 TEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRC 295 (430)
T ss_pred cceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHH
Confidence 568999999999999999999999999999999887654 36899999999999999999999999999999988888
Q ss_pred eEEec-cCC-CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCC-----CEEEEEEecCCCEEEEEe-CCC
Q 005277 498 LRIMA-GHL-SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS-----MILSLAMSPDGRYMASGD-EDG 569 (704)
Q Consensus 498 ~~~~~-~~~-~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~-----~i~~l~~spdg~~l~sg~-~dg 569 (704)
++.+. .|. +.|.+..|..||+|+++.+.|..+++|.+.+|+++..+.|-.. --+...|+....+++.-. ..+
T Consensus 296 v~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~ 375 (430)
T KOG0640|consen 296 VRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASN 375 (430)
T ss_pred HHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccC
Confidence 88875 344 5689999999999999999999999999999999999876421 224456776667766544 356
Q ss_pred eEEEEeCCCCeeeeee-cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEE
Q 005277 570 TIMMWDLASGRCVTPL-MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVK 648 (704)
Q Consensus 570 ~I~iwdl~~~~~~~~~-~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~ 648 (704)
.+.-||.+++..+..+ .+|++.+..+.- ||.+..+++||.|-.++
T Consensus 376 slcsWdaRtadr~~l~slgHn~a~R~i~H----------------------------------SP~~p~FmTcsdD~raR 421 (430)
T KOG0640|consen 376 SLCSWDARTADRVALLSLGHNGAVRWIVH----------------------------------SPVEPAFMTCSDDFRAR 421 (430)
T ss_pred ceeeccccchhhhhhcccCCCCCceEEEe----------------------------------CCCCCceeeecccceee
Confidence 8999999998777665 589999998887 99999999999999999
Q ss_pred EEeCC
Q 005277 649 LWDVT 653 (704)
Q Consensus 649 iWd~~ 653 (704)
+|--.
T Consensus 422 FWyrr 426 (430)
T KOG0640|consen 422 FWYRR 426 (430)
T ss_pred eeeec
Confidence 99754
No 103
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=4.8e-24 Score=205.33 Aligned_cols=248 Identities=22% Similarity=0.413 Sum_probs=199.6
Q ss_pred eeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEE
Q 005277 348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA 427 (704)
Q Consensus 348 ~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 427 (704)
.+|.+-|.|+.|.+.|+.+|+|+.|++|+|||.+. ..+.......+..|.+.|..+
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~------------------------~s~~W~~Ts~Wrah~~Si~rV 65 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTS------------------------DSGTWSCTSSWRAHDGSIWRV 65 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccC------------------------CCCceEEeeeEEecCCcEEEE
Confidence 47788899999999999999999999999999754 223455667788999999999
Q ss_pred EEcC--CCCEEEEEeCCCeEEEEeCC---------CCceeEEeecCCcCeeEEEEcC--CCCEEEEEeCCCeEEEEECCC
Q 005277 428 SFSP--LGDFILSSSADTTIRLWSTK---------LNANLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRTARIWSMDR 494 (704)
Q Consensus 428 ~~sp--~~~~l~s~s~Dg~I~lwd~~---------~~~~~~~~~~h~~~V~~v~~sp--~~~~l~sgs~dg~i~lwd~~~ 494 (704)
.|.+ -|+.++++|.|+++.||.-. ......++......|++|+|.| -|-.+|+++.||++|||+.-.
T Consensus 66 ~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~d 145 (361)
T KOG2445|consen 66 VWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPD 145 (361)
T ss_pred EecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCC
Confidence 9976 47899999999999999752 1233456667788999999999 578899999999999998654
Q ss_pred Cce------eEEec-------cCCCCeeEEEEcCC---CCEEEEEECC-----CcEEEEeCCCC----cEEEEeecCCCC
Q 005277 495 IQP------LRIMA-------GHLSDVDCVRWHIN---CNYIATGSSD-----KTVRLWDVSSG----ECVRIFIGHRSM 549 (704)
Q Consensus 495 ~~~------~~~~~-------~~~~~V~~v~~~p~---~~~l~tgs~d-----g~I~iwd~~~~----~~~~~~~~h~~~ 549 (704)
.-. ...+. .+..+..|+.|+|. ..+||+|+.+ +.+.||....+ ..+..+.+|..+
T Consensus 146 p~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dp 225 (361)
T KOG2445|consen 146 PMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDP 225 (361)
T ss_pred ccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCc
Confidence 221 11122 46677889999974 5788998866 57889876543 234556799999
Q ss_pred EEEEEEecC-C---CEEEEEeCCCeEEEEeCCCC--------------------eeeeeecCCCceeeeeeeeeeehccc
Q 005277 550 ILSLAMSPD-G---RYMASGDEDGTIMMWDLASG--------------------RCVTPLMGHTSCVWTLAYRFLLLVTN 605 (704)
Q Consensus 550 i~~l~~spd-g---~~l~sg~~dg~I~iwdl~~~--------------------~~~~~~~~h~~~V~sl~~~~~~~~~~ 605 (704)
|+.++|.|+ | ..||+++.|| |+||.+... +.+..+..|.+.|+.+.|
T Consensus 226 I~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~w-------- 296 (361)
T KOG2445|consen 226 IRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRW-------- 296 (361)
T ss_pred ceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEE--------
Confidence 999999995 3 4799999999 999998731 345567789999999999
Q ss_pred cccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCC
Q 005277 606 AYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTT 654 (704)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~ 654 (704)
+-.|.+|++.|.||+||+|...-
T Consensus 297 --------------------------NmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 297 --------------------------NMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred --------------------------eeeeeEEeecCCCceeeehhhhh
Confidence 77899999999999999998654
No 104
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=7.2e-25 Score=204.66 Aligned_cols=244 Identities=24% Similarity=0.346 Sum_probs=198.3
Q ss_pred ccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc---eeEEeecCCcCeeEEEEcC--CCCEEEEEeCCCeEEEEE
Q 005277 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA---NLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRTARIWS 491 (704)
Q Consensus 417 ~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~---~~~~~~~h~~~V~~v~~sp--~~~~l~sgs~dg~i~lwd 491 (704)
-..|...|..+...--|+.|+||+.|++|+|+.++... .+..+.+|.+|||.++|.. .|.+||+++.||.|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 34688888887777779999999999999999998654 5778899999999999976 899999999999999999
Q ss_pred CCCCc--eeEEeccCCCCeeEEEEcCC--CCEEEEEECCCcEEEEeCCCC---cEEEEeecCCCCEEEEEEecC---C--
Q 005277 492 MDRIQ--PLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSG---ECVRIFIGHRSMILSLAMSPD---G-- 559 (704)
Q Consensus 492 ~~~~~--~~~~~~~~~~~V~~v~~~p~--~~~l~tgs~dg~I~iwd~~~~---~~~~~~~~h~~~i~~l~~spd---g-- 559 (704)
-.+++ ....+..|...|++|+|.|. |-.|+++++||.|.+.++++. ...+....|.-.|++++|.|- |
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~ 166 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL 166 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence 88764 34456689999999999985 678999999999999998754 223445689999999999995 5
Q ss_pred ---------CEEEEEeCCCeEEEEeCCCCe--eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEee
Q 005277 560 ---------RYMASGDEDGTIMMWDLASGR--CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYF 628 (704)
Q Consensus 560 ---------~~l~sg~~dg~I~iwdl~~~~--~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (704)
+.|++|+.|..|+||+..+++ .-+++.+|.+-|..++|.+..
T Consensus 167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~--------------------------- 219 (299)
T KOG1332|consen 167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSV--------------------------- 219 (299)
T ss_pred cccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhcccc---------------------------
Confidence 579999999999999998763 345689999999999993210
Q ss_pred cccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277 629 GCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 702 (704)
Q Consensus 629 ~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg 702 (704)
.--...||++|.||+|.||-....... .. ...+.....+++.++||..|.+|++++.|+
T Consensus 220 ---gl~~s~iAS~SqDg~viIwt~~~e~e~---------wk---~tll~~f~~~~w~vSWS~sGn~LaVs~GdN 278 (299)
T KOG1332|consen 220 ---GLPKSTIASCSQDGTVIIWTKDEEYEP---------WK---KTLLEEFPDVVWRVSWSLSGNILAVSGGDN 278 (299)
T ss_pred ---CCCceeeEEecCCCcEEEEEecCccCc---------cc---ccccccCCcceEEEEEeccccEEEEecCCc
Confidence 112358999999999999988743221 11 223334667899999999999999998875
No 105
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=6.9e-24 Score=214.67 Aligned_cols=255 Identities=20% Similarity=0.346 Sum_probs=206.9
Q ss_pred ceeeccCCccCeEEEEEcCCCCE-EEEEeCCCeEEEEeCCCCce----------eEEeecCCcCeeEEEEcCC-CCEEEE
Q 005277 413 SYTLYQGHSGPVYSASFSPLGDF-ILSSSADTTIRLWSTKLNAN----------LVCYKGHNYPVWDVQFNPQ-GHYFAS 480 (704)
Q Consensus 413 ~~~~~~~h~~~V~~l~~sp~~~~-l~s~s~Dg~I~lwd~~~~~~----------~~~~~~h~~~V~~v~~sp~-~~~l~s 480 (704)
.+.....|.+.|+.+.+-|++.. +++.+..+.|.|||...... -..+.+|...-.+++|++. .-++++
T Consensus 116 ~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls 195 (422)
T KOG0264|consen 116 EISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLS 195 (422)
T ss_pred EEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEee
Confidence 34445679999999999998875 45778889999999764322 2367889887889999994 457999
Q ss_pred EeCCCeEEEEECCCC-------ceeEEeccCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCC--CCcEEEEeecCCCCE
Q 005277 481 SSHDRTARIWSMDRI-------QPLRIMAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVS--SGECVRIFIGHRSMI 550 (704)
Q Consensus 481 gs~dg~i~lwd~~~~-------~~~~~~~~~~~~V~~v~~~p~-~~~l~tgs~dg~I~iwd~~--~~~~~~~~~~h~~~i 550 (704)
|+.|++|++||+... .+...+.+|...|..++|||- ...+++++.|+.+.|||+| +.++.....+|.+.|
T Consensus 196 ~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~v 275 (422)
T KOG0264|consen 196 GSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEV 275 (422)
T ss_pred ccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCce
Confidence 999999999999643 356778899999999999984 5678889999999999999 566777788999999
Q ss_pred EEEEEec-CCCEEEEEeCCCeEEEEeCCCC-eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEee
Q 005277 551 LSLAMSP-DGRYMASGDEDGTIMMWDLASG-RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYF 628 (704)
Q Consensus 551 ~~l~~sp-dg~~l~sg~~dg~I~iwdl~~~-~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (704)
.|++|+| ++..||+|+.|++|.+||+|+. +++.++.+|...|..+.|
T Consensus 276 n~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~W------------------------------- 324 (422)
T KOG0264|consen 276 NCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEW------------------------------- 324 (422)
T ss_pred eEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEe-------------------------------
Confidence 9999999 5667889999999999999974 578889999999999999
Q ss_pred cccCCC-CCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEe-ecCC
Q 005277 629 GCASCE-GSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAG-ALSK 702 (704)
Q Consensus 629 ~~~s~~-g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~g-s~dg 702 (704)
||. ..+||+++.|+.+.|||+..-..... .+........++....+|...|..++|+|....++++ +.|+
T Consensus 325 ---SPh~etvLASSg~D~rl~vWDls~ig~eq~-~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN 396 (422)
T KOG0264|consen 325 ---SPHNETVLASSGTDRRLNVWDLSRIGEEQS-PEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDN 396 (422)
T ss_pred ---CCCCCceeEecccCCcEEEEeccccccccC-hhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCc
Confidence 776 46889999999999999987554332 1112233446678889999999999999988765544 4443
No 106
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=6.3e-24 Score=214.48 Aligned_cols=278 Identities=17% Similarity=0.268 Sum_probs=229.4
Q ss_pred eCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEE
Q 005277 349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS 428 (704)
Q Consensus 349 ~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 428 (704)
..+++|+|+.|+|...+|++|+.||.++||.++.... ..++.+.--..||.+.+
T Consensus 211 ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N--------------------------~~lqS~~l~~fPi~~a~ 264 (514)
T KOG2055|consen 211 PSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN--------------------------PKLQSIHLEKFPIQKAE 264 (514)
T ss_pred cCcCCceEEEecCCCceEEEecCCCcEEEEEecCccC--------------------------hhheeeeeccCccceee
Confidence 3457899999999999999999999999999986321 12333333467999999
Q ss_pred EcCCCC-EEEEEeCCCeEEEEeCCCCceeE--EeecCC-cCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccC
Q 005277 429 FSPLGD-FILSSSADTTIRLWSTKLNANLV--CYKGHN-YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH 504 (704)
Q Consensus 429 ~sp~~~-~l~s~s~Dg~I~lwd~~~~~~~~--~~~~h~-~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~ 504 (704)
|+|+|. .+++++....++.||+.+.+... ...++. ..+.....++++++++..|..|.|.+....+++.+..+. -
T Consensus 265 f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-i 343 (514)
T KOG2055|consen 265 FAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-I 343 (514)
T ss_pred ecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-e
Confidence 999999 88899999999999998876533 233443 357788899999999999999999999999998888877 5
Q ss_pred CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCC-CEEEEEEecCCCEEEEEeCCCeEEEEeCCC-----
Q 005277 505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS-MILSLAMSPDGRYMASGDEDGTIMMWDLAS----- 578 (704)
Q Consensus 505 ~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~-~i~~l~~spdg~~l~sg~~dg~I~iwdl~~----- 578 (704)
.+.|..++|+.+++.|++.+.+|.|.+||++...+++.+....+ .-+++|.|++|.|||+|+..|.|.|||..+
T Consensus 344 eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~ 423 (514)
T KOG2055|consen 344 EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAST 423 (514)
T ss_pred ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccC
Confidence 67899999999999999999999999999999999999875432 346788889999999999999999999654
Q ss_pred -CeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEe--CCCcEEEEeCCCC
Q 005277 579 -GRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGS--ADCTVKLWDVTTS 655 (704)
Q Consensus 579 -~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs--~Dg~V~iWd~~~~ 655 (704)
.+++..+..-...|+++.| ++++.+||.+| .+..+++-.+.+.
T Consensus 424 ~PkPik~~dNLtt~Itsl~F----------------------------------n~d~qiLAiaS~~~knalrLVHvPS~ 469 (514)
T KOG2055|consen 424 NPKPIKTVDNLTTAITSLQF----------------------------------NHDAQILAIASRVKKNALRLVHVPSC 469 (514)
T ss_pred CCCchhhhhhhheeeeeeee----------------------------------CcchhhhhhhhhccccceEEEeccce
Confidence 4677777777788999999 99999998777 5678999998876
Q ss_pred ccccccccccCccccccccccCC---CCcCeEEEEEccCCcEEEEeecCC
Q 005277 656 TKVLKTEEKSGTNRLRSLKTLPT---KSTPVYSLQFSRRNLLFAAGALSK 702 (704)
Q Consensus 656 ~~~~~~~~~~~~~~~~~l~~~~~---~~~~V~~l~fs~~g~~La~gs~dg 702 (704)
... ..+|+ .-+.|+||+|||.+-+||+|...|
T Consensus 470 TVF---------------sNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~g 504 (514)
T KOG2055|consen 470 TVF---------------SNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAG 504 (514)
T ss_pred eee---------------ccCCCCCCcccceEEEEecCCCceEEeecCCC
Confidence 432 23333 335689999999999999998776
No 107
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.8e-23 Score=227.13 Aligned_cols=273 Identities=18% Similarity=0.270 Sum_probs=228.2
Q ss_pred eeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEE
Q 005277 348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA 427 (704)
Q Consensus 348 ~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 427 (704)
..|..+.+.++|.|+|.+|.+++.||.|++|+...... .... ..-|...|.++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e------------------------~P~t---i~~~g~~v~~i 62 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE------------------------EPET---IDISGELVSSI 62 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc------------------------CCch---hhccCceeEEE
Confidence 35788899999999999999999999999998654110 0011 11166778888
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCC
Q 005277 428 SFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD 507 (704)
Q Consensus 428 ~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~ 507 (704)
+.. ..+|++|+.+++|.+|.+.++..-..+...+.++.+++|+-+|.++|.||.|-.|++.++........+.+|..+
T Consensus 63 a~~--s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~ap 140 (933)
T KOG1274|consen 63 ACY--SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAP 140 (933)
T ss_pred eec--ccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCc
Confidence 765 558999999999999999998877667777889999999999999999999999999999999999999999999
Q ss_pred eeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecC--------CCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCC
Q 005277 508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH--------RSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579 (704)
Q Consensus 508 V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h--------~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~ 579 (704)
|.++.|+|++++||+.+.||.|++||+.++.+..++.+- ...+..++|+|+|..++..+.|+.|++|+..++
T Consensus 141 Vl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~w 220 (933)
T KOG1274|consen 141 VLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGW 220 (933)
T ss_pred eeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCc
Confidence 999999999999999999999999999998877665431 345678999999888999999999999999999
Q ss_pred eeeeeecC--CCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcc
Q 005277 580 RCVTPLMG--HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTK 657 (704)
Q Consensus 580 ~~~~~~~~--h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~ 657 (704)
.....+.. +...+..+.| +|.|.+||+++.||.|.|||+++-..
T Consensus 221 e~~f~Lr~~~~ss~~~~~~w----------------------------------sPnG~YiAAs~~~g~I~vWnv~t~~~ 266 (933)
T KOG1274|consen 221 ELQFKLRDKLSSSKFSDLQW----------------------------------SPNGKYIAASTLDGQILVWNVDTHER 266 (933)
T ss_pred eeheeecccccccceEEEEE----------------------------------cCCCcEEeeeccCCcEEEEecccchh
Confidence 88887754 3445888999 99999999999999999999987221
Q ss_pred ccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277 658 VLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 702 (704)
Q Consensus 658 ~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg 702 (704)
......|.+++|-|+...+..-...|
T Consensus 267 -------------------~~~~~~Vc~~aw~p~~n~it~~~~~g 292 (933)
T KOG1274|consen 267 -------------------HEFKRAVCCEAWKPNANAITLITALG 292 (933)
T ss_pred -------------------ccccceeEEEecCCCCCeeEEEeecc
Confidence 23345689999998887665544433
No 108
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=3.3e-24 Score=226.11 Aligned_cols=252 Identities=23% Similarity=0.398 Sum_probs=210.6
Q ss_pred eEeecCCCCCCeEE-EEEeeCCCCEEE-EEEcC-CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCC
Q 005277 331 RVHLSSAALPSVSF-YTFINTHNGLNC-ASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP 407 (704)
Q Consensus 331 ~~~l~~~~~p~~~~-~~~~~~~~~V~~-~~fs~-dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (704)
++++|......... ..+.+|.+-|.+ +++-+ ++-.|++|+.|++|.+|.+..
T Consensus 36 t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~------------------------- 90 (745)
T KOG0301|consen 36 TVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQ------------------------- 90 (745)
T ss_pred ceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCC-------------------------
Confidence 45566553332222 345567776776 77765 455699999999999999875
Q ss_pred CCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeE
Q 005277 408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTA 487 (704)
Q Consensus 408 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i 487 (704)
..+...+.||...|.|++...++. ++|||+|.|+++|-. +++...+.+|+.+||++..-|.+ .++|||.|++|
T Consensus 91 ---~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtI 163 (745)
T KOG0301|consen 91 ---AEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTI 163 (745)
T ss_pred ---CCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCccee
Confidence 346677899999999999887777 999999999999987 46666789999999999999988 89999999999
Q ss_pred EEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeC
Q 005277 488 RIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE 567 (704)
Q Consensus 488 ~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~ 567 (704)
++|.- ++.++.|.+|.+.|+.+++-|++ .+++++.||.|++|++ +|.++..+.+|.+.|.++...+++..++++++
T Consensus 164 klWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gE 239 (745)
T KOG0301|consen 164 KLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGE 239 (745)
T ss_pred eeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecC
Confidence 99986 66889999999999999998764 5788889999999999 89999999999999999998889999999999
Q ss_pred CCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcE
Q 005277 568 DGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTV 647 (704)
Q Consensus 568 dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V 647 (704)
|++++||+.. .+.+.+.-....||+..+ -++| -|++|+.||.|
T Consensus 240 DrtlriW~~~--e~~q~I~lPttsiWsa~~----------------------------------L~Ng-DIvvg~SDG~V 282 (745)
T KOG0301|consen 240 DRTLRIWKKD--ECVQVITLPTTSIWSAKV----------------------------------LLNG-DIVVGGSDGRV 282 (745)
T ss_pred CceEEEeecC--ceEEEEecCccceEEEEE----------------------------------eeCC-CEEEeccCceE
Confidence 9999999976 777777766668888876 4455 47788889999
Q ss_pred EEEeCCCC
Q 005277 648 KLWDVTTS 655 (704)
Q Consensus 648 ~iWd~~~~ 655 (704)
|||.....
T Consensus 283 rVfT~~k~ 290 (745)
T KOG0301|consen 283 RVFTVDKD 290 (745)
T ss_pred EEEEeccc
Confidence 99998743
No 109
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.7e-23 Score=202.13 Aligned_cols=280 Identities=18% Similarity=0.239 Sum_probs=208.6
Q ss_pred EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (704)
Q Consensus 346 ~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (704)
++.+|.+.|+|++||.||+.||+++.|+.|+||++....... .+.++.... -+.-+
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~e-----------------------Hr~~R~nve-~dhpT 136 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKE-----------------------HRCIRQNVE-YDHPT 136 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhh-----------------------hhHhhcccc-CCCce
Confidence 367999999999999999999999999999999998632221 111111111 12357
Q ss_pred EEEEcCCCCEEE-EEeCCCeEEEEeCCCCc---ee---------EEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 005277 426 SASFSPLGDFIL-SSSADTTIRLWSTKLNA---NL---------VCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM 492 (704)
Q Consensus 426 ~l~~sp~~~~l~-s~s~Dg~I~lwd~~~~~---~~---------~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~ 492 (704)
.+.|+||-+-++ ++-...++++|.+...+ .. ..-+.|.-+|.++-....+.++++++.|..|.+|++
T Consensus 137 ~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~l 216 (420)
T KOG2096|consen 137 RVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDL 216 (420)
T ss_pred EEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEec
Confidence 789999987554 55566689999765321 11 111236667777778888999999999999999999
Q ss_pred CCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC---CC-----cEEEEeecCCCCEEEEEEecCCCEEEE
Q 005277 493 DRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS---SG-----ECVRIFIGHRSMILSLAMSPDGRYMAS 564 (704)
Q Consensus 493 ~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~---~~-----~~~~~~~~h~~~i~~l~~spdg~~l~s 564 (704)
. ++.+..+......-...+.+|+|+++++++-.-.|.+|.+- .| ..+..+.||...|..++|+|+...+++
T Consensus 217 k-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vt 295 (420)
T KOG2096|consen 217 K-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVT 295 (420)
T ss_pred C-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEE
Confidence 8 78888887766677778899999999999999999999873 22 234567899999999999999999999
Q ss_pred EeCCCeEEEEeCCCC-------eeeeeec--CC--C-ceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccC
Q 005277 565 GDEDGTIMMWDLASG-------RCVTPLM--GH--T-SCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCAS 632 (704)
Q Consensus 565 g~~dg~I~iwdl~~~-------~~~~~~~--~h--~-~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 632 (704)
.+.||+++|||..-. +.++... -| . .++ .+.. +
T Consensus 296 vSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~-RL~l----------------------------------s 340 (420)
T KOG2096|consen 296 VSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPV-RLEL----------------------------------S 340 (420)
T ss_pred EecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCce-EEEe----------------------------------C
Confidence 999999999997532 1111110 01 1 122 3333 9
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeec
Q 005277 633 CEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL 700 (704)
Q Consensus 633 ~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~ 700 (704)
|+|+.||.... ..++++..++++.... .-..|.+.|.+++|+++|+++++++.
T Consensus 341 P~g~~lA~s~g-s~l~~~~se~g~~~~~--------------~e~~h~~~Is~is~~~~g~~~atcGd 393 (420)
T KOG2096|consen 341 PSGDSLAVSFG-SDLKVFASEDGKDYPE--------------LEDIHSTTISSISYSSDGKYIATCGD 393 (420)
T ss_pred CCCcEEEeecC-CceEEEEcccCccchh--------------HHHhhcCceeeEEecCCCcEEeeecc
Confidence 99999887764 4899999988764321 12357889999999999999999875
No 110
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.93 E-value=1.3e-24 Score=221.71 Aligned_cols=243 Identities=24% Similarity=0.386 Sum_probs=191.3
Q ss_pred ceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce----eEEe-ecCCcCeeEEEEcCCCCEEEEEeCCCeE
Q 005277 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN----LVCY-KGHNYPVWDVQFNPQGHYFASSSHDRTA 487 (704)
Q Consensus 413 ~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~----~~~~-~~h~~~V~~v~~sp~~~~l~sgs~dg~i 487 (704)
....+.+|+..|.++++.|.|-.|++||.|.+|++||+..... ...+ ......|.+++|++.|..|++.+....+
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa 238 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA 238 (641)
T ss_pred ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence 4456789999999999999999999999999999999875432 1122 2335679999999999999999988999
Q ss_pred EEEECCCCceeEE------------eccCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCcE-EEEee-----cCCC
Q 005277 488 RIWSMDRIQPLRI------------MAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGEC-VRIFI-----GHRS 548 (704)
Q Consensus 488 ~lwd~~~~~~~~~------------~~~~~~~V~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~~-~~~~~-----~h~~ 548 (704)
+|+|-+....+.. -.||...++|.+|||. ...+++++.||++|+||+...+. ..++. +..-
T Consensus 239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv 318 (641)
T KOG0772|consen 239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV 318 (641)
T ss_pred eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence 9999876544332 3589999999999995 56789999999999999976443 33332 2344
Q ss_pred CEEEEEEecCCCEEEEEeCCCeEEEEeCCCCee---eeeecCCCc--eeeeeeeeeeehccccccccccccccceeeeee
Q 005277 549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGRC---VTPLMGHTS--CVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSL 623 (704)
Q Consensus 549 ~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~---~~~~~~h~~--~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (704)
++++++|+|||++||+|+.||.|.+|+.++... ...-.+|.. .|+++.|
T Consensus 319 ~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~F-------------------------- 372 (641)
T KOG0772|consen 319 PVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISF-------------------------- 372 (641)
T ss_pred CceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEe--------------------------
Confidence 789999999999999999999999999865422 233357876 9999999
Q ss_pred eEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecC
Q 005277 624 TIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS 701 (704)
Q Consensus 624 ~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~d 701 (704)
|++|++|++-|.|+++++||+...+....... -+ ...-+-+.++|||+.+++++|+.-
T Consensus 373 --------S~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~t-----------gL-~t~~~~tdc~FSPd~kli~TGtS~ 430 (641)
T KOG0772|consen 373 --------SYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRT-----------GL-PTPFPGTDCCFSPDDKLILTGTSA 430 (641)
T ss_pred --------ccccchhhhccCCCceeeeeccccccchhhhc-----------CC-CccCCCCccccCCCceEEEecccc
Confidence 99999999999999999999998765432211 11 112245678999999999999764
No 111
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=4.4e-24 Score=216.23 Aligned_cols=221 Identities=28% Similarity=0.457 Sum_probs=194.3
Q ss_pred CccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECC------
Q 005277 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD------ 493 (704)
Q Consensus 420 h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~------ 493 (704)
-.++|.+++-+|+|.+|+.|+..|.|++|.+.+|..+..+..|-.+|+++.|+-||.+|+|||.||.|.+|.+-
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~ 159 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD 159 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred ---CCceeEEeccCCCCeeEEEEcCC--CCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCC
Q 005277 494 ---RIQPLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED 568 (704)
Q Consensus 494 ---~~~~~~~~~~~~~~V~~v~~~p~--~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~d 568 (704)
+..+++.+..|.-+|+.+...+. ..+++|+|.|.+|++||+..|..+..+. ....+.+++.+|-++.+++|+.+
T Consensus 160 ~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~ 238 (476)
T KOG0646|consen 160 NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEE 238 (476)
T ss_pred cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCc
Confidence 45688999999999999988754 4789999999999999999999888774 56789999999999999999999
Q ss_pred CeEEEEeCCCC----------------eeeeeecCCCc--eeeeeeeeeeehccccccccccccccceeeeeeeEEeecc
Q 005277 569 GTIMMWDLASG----------------RCVTPLMGHTS--CVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGC 630 (704)
Q Consensus 569 g~I~iwdl~~~----------------~~~~~~~~h~~--~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (704)
|.|.+.++... ..+..+.||.+ .|++++.
T Consensus 239 G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLai--------------------------------- 285 (476)
T KOG0646|consen 239 GKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAI--------------------------------- 285 (476)
T ss_pred ceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEE---------------------------------
Confidence 99999887543 23455678887 8999998
Q ss_pred cCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEcc
Q 005277 631 ASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSR 690 (704)
Q Consensus 631 ~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~ 690 (704)
+.||.+|++|+.||.|+|||+.+.+. +.++.+..+||+.+.+.|
T Consensus 286 -s~DgtlLlSGd~dg~VcvWdi~S~Q~---------------iRtl~~~kgpVtnL~i~~ 329 (476)
T KOG0646|consen 286 -STDGTLLLSGDEDGKVCVWDIYSKQC---------------IRTLQTSKGPVTNLQINP 329 (476)
T ss_pred -ecCccEEEeeCCCCCEEEEecchHHH---------------HHHHhhhccccceeEeec
Confidence 99999999999999999999988654 455555677888888855
No 112
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=7.9e-24 Score=204.20 Aligned_cols=272 Identities=21% Similarity=0.356 Sum_probs=205.1
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCC
Q 005277 354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG 433 (704)
Q Consensus 354 V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~ 433 (704)
-.|+.||+.|.+||+|+.||.|.|||+.+ ....+.+.+|..+|.+++||++|
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T----------------------------~~iar~lsaH~~pi~sl~WS~dg 77 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDT----------------------------FRIARMLSAHVRPITSLCWSRDG 77 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccc----------------------------cchhhhhhccccceeEEEecCCC
Confidence 78999999999999999999999999987 23456688999999999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCC-CEEEEEeCCCeEEEEECCCCceeEEeccCC----CCe
Q 005277 434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRIQPLRIMAGHL----SDV 508 (704)
Q Consensus 434 ~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~-~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~----~~V 508 (704)
+.|+|+|.|..|.+||+..|.++..++ ..++||...|+|.. +.+++.-.+....+-++..+.....-.... ..-
T Consensus 78 r~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sa 156 (405)
T KOG1273|consen 78 RKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSA 156 (405)
T ss_pred CEeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccccccc
Confidence 999999999999999999999998887 67899999999943 444444445556666665422211111111 122
Q ss_pred eEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCC-CCEEEEEEecCCCEEEEEeCCCeEEEEeCCCC----e--e
Q 005277 509 DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-SMILSLAMSPDGRYMASGDEDGTIMMWDLASG----R--C 581 (704)
Q Consensus 509 ~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~----~--~ 581 (704)
.+..|++.|+||++|...|.+.++|..+-+++..++-.. ..|.++.++..|++|+..+.|..|+.|+++.- + .
T Consensus 157 s~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e 236 (405)
T KOG1273|consen 157 SHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGE 236 (405)
T ss_pred ccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCC
Confidence 345688999999999999999999999999999887666 78999999999999999999999999998621 1 1
Q ss_pred eeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeC-CCcEEEEeCCCCccccc
Q 005277 582 VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSA-DCTVKLWDVTTSTKVLK 660 (704)
Q Consensus 582 ~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~-Dg~V~iWd~~~~~~~~~ 660 (704)
+........-|..+.|+ .+|+|.+|.+++.|+. -..++||.-..|..+
T Consensus 237 ~e~~~K~qDvVNk~~Wk-----------------------------~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLV-- 285 (405)
T KOG1273|consen 237 VEPEHKLQDVVNKLQWK-----------------------------KCCFSGDGEYVCAGSARAHALYIWEKSIGSLV-- 285 (405)
T ss_pred cChhHHHHHHHhhhhhh-----------------------------heeecCCccEEEeccccceeEEEEecCCccee--
Confidence 11111112455666662 3466889999988774 468999998887543
Q ss_pred cccccCccccccccccCCCC-cCeEEEEEccCCcEEEEe
Q 005277 661 TEEKSGTNRLRSLKTLPTKS-TPVYSLQFSRRNLLFAAG 698 (704)
Q Consensus 661 ~~~~~~~~~~~~l~~~~~~~-~~V~~l~fs~~g~~La~g 698 (704)
+.+.+.. .....|.|+|--.++++-
T Consensus 286 -------------KILhG~kgE~l~DV~whp~rp~i~si 311 (405)
T KOG1273|consen 286 -------------KILHGTKGEELLDVNWHPVRPIIASI 311 (405)
T ss_pred -------------eeecCCchhheeecccccceeeeeec
Confidence 3333333 445667777766666554
No 113
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4e-25 Score=235.52 Aligned_cols=220 Identities=22% Similarity=0.421 Sum_probs=185.1
Q ss_pred EEEEEEcC-CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCC
Q 005277 354 LNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL 432 (704)
Q Consensus 354 V~~~~fs~-dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 432 (704)
+..+.|+. +.++||+++..|.|.+||+... ...+....+..|...|.++.|++.
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~-------------------------~rnk~l~~f~EH~Rs~~~ldfh~t 144 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKS-------------------------IRNKLLTVFNEHERSANKLDFHST 144 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCcc-------------------------ccchhhhHhhhhccceeeeeeccC
Confidence 45577775 4889999999999999999752 123455678899999999999986
Q ss_pred CC-EEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcC-CCCEEEEEeCCCeEEEEECCCC-ceeEEeccCCCCee
Q 005277 433 GD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRI-QPLRIMAGHLSDVD 509 (704)
Q Consensus 433 ~~-~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~lwd~~~~-~~~~~~~~~~~~V~ 509 (704)
.. +|+|||.||+|++||++..+...++.+....|.+|+|+| .+.+|+++...|.+++||++.. ++...+..|.++|.
T Consensus 145 ep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~ 224 (839)
T KOG0269|consen 145 EPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVL 224 (839)
T ss_pred CccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceE
Confidence 64 678999999999999999999999999999999999999 7889999999999999999875 46677889999999
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeec-CCCCEEEEEEecCCC-EEEEEe--CCCeEEEEeCCCC-eeeee
Q 005277 510 CVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG-HRSMILSLAMSPDGR-YMASGD--EDGTIMMWDLASG-RCVTP 584 (704)
Q Consensus 510 ~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~-h~~~i~~l~~spdg~-~l~sg~--~dg~I~iwdl~~~-~~~~~ 584 (704)
|+.|||++.+||||+.|+.|+|||+.+++.-....- ...+|.++.|-|... .|++++ .|-.|+|||++.. -+..+
T Consensus 225 c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t 304 (839)
T KOG0269|consen 225 CLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYAT 304 (839)
T ss_pred EEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecccccccee
Confidence 999999999999999999999999986654333332 346899999999765 456554 5789999999765 34567
Q ss_pred ecCCCceeeeeeee
Q 005277 585 LMGHTSCVWTLAYR 598 (704)
Q Consensus 585 ~~~h~~~V~sl~~~ 598 (704)
+..|+..++.+.|.
T Consensus 305 ~~eH~~~vt~i~W~ 318 (839)
T KOG0269|consen 305 FLEHTDSVTGIAWD 318 (839)
T ss_pred eeccCccccceecc
Confidence 88899999999993
No 114
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=4.7e-25 Score=230.81 Aligned_cols=224 Identities=28% Similarity=0.482 Sum_probs=200.7
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCc------eeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCC--ceeEEec
Q 005277 431 PLGDFILSSSADTTIRLWSTKLNA------NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI--QPLRIMA 502 (704)
Q Consensus 431 p~~~~l~s~s~Dg~I~lwd~~~~~------~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~--~~~~~~~ 502 (704)
|.+++|++|+.||.|++|++.... .+..+..|...|.++....+++.|+++|.|-+|++|+.... -+..++.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir 114 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR 114 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence 456789999999999999987543 36678889999999999999999999999999999999876 5777888
Q ss_pred cCCCCeeEEEE-cCCCCEEEEEECCCcEEEEeCCCCc--EEEE--------ee-cCCCCEEEEEEecCCCEEEEEeCCCe
Q 005277 503 GHLSDVDCVRW-HINCNYIATGSSDKTVRLWDVSSGE--CVRI--------FI-GHRSMILSLAMSPDGRYMASGDEDGT 570 (704)
Q Consensus 503 ~~~~~V~~v~~-~p~~~~l~tgs~dg~I~iwd~~~~~--~~~~--------~~-~h~~~i~~l~~spdg~~l~sg~~dg~ 570 (704)
.|.+.|.|+++ -++...+|+|+-|+.|.+||+.++. .+.. .. |+..+|++++.++.|..+++|+..+.
T Consensus 115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~ 194 (735)
T KOG0308|consen 115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKD 194 (735)
T ss_pred cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccc
Confidence 99999999999 7888999999999999999999772 2222 22 78889999999999999999999999
Q ss_pred EEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEE
Q 005277 571 IMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLW 650 (704)
Q Consensus 571 I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iW 650 (704)
|++||.++++.+..++||+..|..+-. ++||+.++++|.||+|++|
T Consensus 195 lr~wDprt~~kimkLrGHTdNVr~ll~----------------------------------~dDGt~~ls~sSDgtIrlW 240 (735)
T KOG0308|consen 195 LRLWDPRTCKKIMKLRGHTDNVRVLLV----------------------------------NDDGTRLLSASSDGTIRLW 240 (735)
T ss_pred eEEeccccccceeeeeccccceEEEEE----------------------------------cCCCCeEeecCCCceEEee
Confidence 999999999999999999999999988 9999999999999999999
Q ss_pred eCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 651 DVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 651 d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
|+... +++.++..|...|.++..+|+-..+.+|+.||.
T Consensus 241 dLgqQ---------------rCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~ 278 (735)
T KOG0308|consen 241 DLGQQ---------------RCLATYIVHKEGVWALQSSPSFTHVYSGGRDGN 278 (735)
T ss_pred ecccc---------------ceeeeEEeccCceEEEeeCCCcceEEecCCCCc
Confidence 99764 567788889999999999999999999999874
No 115
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=4.1e-24 Score=216.05 Aligned_cols=218 Identities=25% Similarity=0.443 Sum_probs=190.4
Q ss_pred eCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEE
Q 005277 349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS 428 (704)
Q Consensus 349 ~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 428 (704)
+|...|.|++.|+||++||+|+.|..|.||+..+ ...+..+.+|.+.|.+++
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t----------------------------~ehv~~~~ghr~~V~~L~ 251 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDT----------------------------LEHVKVFKGHRGAVSSLA 251 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCCceEEEecCcc----------------------------cchhhcccccccceeeee
Confidence 7889999999999999999999999999999886 334455889999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCe
Q 005277 429 FSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDV 508 (704)
Q Consensus 429 ~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V 508 (704)
|-.....|++++.|.+|++|+++....+.++.+|...|.+|.-..-++.+-+|+.|+++++|++.. ....++.++.+.+
T Consensus 252 fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~si 330 (479)
T KOG0299|consen 252 FRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSI 330 (479)
T ss_pred eecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCe
Confidence 998888899999999999999999999999999999999999998888888888999999999943 4455678899999
Q ss_pred eEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEee-cC-----------CCCEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 005277 509 DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GH-----------RSMILSLAMSPDGRYMASGDEDGTIMMWDL 576 (704)
Q Consensus 509 ~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h-----------~~~i~~l~~spdg~~l~sg~~dg~I~iwdl 576 (704)
.|++|- +...+++|+.+|.|.+|++...+++.+.. .| ..+|++++..|...++++|+.+|+|++|-+
T Consensus 331 dcv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i 409 (479)
T KOG0299|consen 331 DCVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKI 409 (479)
T ss_pred eeEEEe-cccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEe
Confidence 999995 56789999999999999999998887653 12 238999999999999999999999999999
Q ss_pred CCC----eeeeeecCCCceeeeeee
Q 005277 577 ASG----RCVTPLMGHTSCVWTLAY 597 (704)
Q Consensus 577 ~~~----~~~~~~~~h~~~V~sl~~ 597 (704)
..+ +++..+. -.+.|+++.|
T Consensus 410 ~~g~r~i~~l~~ls-~~GfVNsl~f 433 (479)
T KOG0299|consen 410 EDGLRAINLLYSLS-LVGFVNSLAF 433 (479)
T ss_pred cCCccccceeeecc-cccEEEEEEE
Confidence 877 3344444 5688888888
No 116
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=7e-23 Score=198.94 Aligned_cols=243 Identities=23% Similarity=0.406 Sum_probs=207.6
Q ss_pred EEeeCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC
Q 005277 346 TFINTHNGLNCASISQDGSLVAGGFS--DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (704)
Q Consensus 346 ~~~~~~~~V~~~~fs~dg~~lasg~~--dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 423 (704)
+...+.-+|..+.|......+..++. |-+||..++.+ .+.++.+.||...
T Consensus 51 ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~d----------------------------NkylRYF~GH~~~ 102 (311)
T KOG1446|consen 51 TINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHD----------------------------NKYLRYFPGHKKR 102 (311)
T ss_pred EeecccccccEEEEecCCceEEEccCCCCCceEEEEeec----------------------------CceEEEcCCCCce
Confidence 44555668899999887777777776 88999999876 5678889999999
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCC--ceeEEe
Q 005277 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI--QPLRIM 501 (704)
Q Consensus 424 V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~--~~~~~~ 501 (704)
|.+++.+|-++.++|++.|++|++||++..++...+.....+| ++|.|.|-+||++.....|++||++.. .|..++
T Consensus 103 V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf 180 (311)
T KOG1446|consen 103 VNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTF 180 (311)
T ss_pred EEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCCCcEEEEecCCCeEEEEEecccCCCCceeE
Confidence 9999999999999999999999999999988888777555554 789999999999998889999999863 455555
Q ss_pred c---cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCE---EEEEEecCCCEEEEEeCCCeEEEEe
Q 005277 502 A---GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMI---LSLAMSPDGRYMASGDEDGTIMMWD 575 (704)
Q Consensus 502 ~---~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i---~~l~~spdg~~l~sg~~dg~I~iwd 575 (704)
. +.....+.+.|+|+|++|+.++..+.+++.|.-+|.....+.++...- ...+|+|||+++++|+.||+|.+|+
T Consensus 181 ~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 181 SITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWN 260 (311)
T ss_pred ccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEE
Confidence 4 346778999999999999999999999999999999998888776532 5788999999999999999999999
Q ss_pred CCCCeeeeeecC-CCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCC
Q 005277 576 LASGRCVTPLMG-HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTT 654 (704)
Q Consensus 576 l~~~~~~~~~~~-h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~ 654 (704)
+++|..+..+.+ +.+++.++.| +|.-.++++++ ..+.+|=...
T Consensus 261 ~~tg~~v~~~~~~~~~~~~~~~f----------------------------------nP~~~mf~sa~--s~l~fw~p~~ 304 (311)
T KOG1446|consen 261 LETGKKVAVLRGPNGGPVSCVRF----------------------------------NPRYAMFVSAS--SNLVFWLPDE 304 (311)
T ss_pred cCCCcEeeEecCCCCCCcccccc----------------------------------CCceeeeeecC--ceEEEEeccc
Confidence 999999999988 6899999999 77766777665 5788886543
No 117
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=2e-23 Score=199.57 Aligned_cols=219 Identities=26% Similarity=0.461 Sum_probs=175.8
Q ss_pred eeCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEE
Q 005277 348 INTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (704)
Q Consensus 348 ~~~~~~V~~~~fs~d-g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 426 (704)
..|.++|+++.+.+- |+++++|+.||.|.+||+........ ...+....-........+|.-.|.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~-------------s~li~k~~c~v~~~h~~~Hky~iss 106 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEA-------------SGLIAKHKCIVAKQHENGHKYAISS 106 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhh-------------ccceeheeeeccccCCccceeeeee
Confidence 468899999999885 99999999999999999975221000 0000000000011234578999999
Q ss_pred EEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcC---CCCEEEEEeCCCeEEEEECCCCceeEEec
Q 005277 427 ASFSPLG-DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP---QGHYFASSSHDRTARIWSMDRIQPLRIMA 502 (704)
Q Consensus 427 l~~sp~~-~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp---~~~~l~sgs~dg~i~lwd~~~~~~~~~~~ 502 (704)
+.|-|-. ..+.++|-|.++++||..+-+....|+ ..+.|.+-+|+| ...++|+|..|-.|++.|+..+....++.
T Consensus 107 ~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls 185 (397)
T KOG4283|consen 107 AIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS 185 (397)
T ss_pred eEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec
Confidence 9999954 467799999999999999999888887 466899999998 34578888899999999999999999999
Q ss_pred cCCCCeeEEEEcCCCCE-EEEEECCCcEEEEeCCCC-cEEEEe--------------ecCCCCEEEEEEecCCCEEEEEe
Q 005277 503 GHLSDVDCVRWHINCNY-IATGSSDKTVRLWDVSSG-ECVRIF--------------IGHRSMILSLAMSPDGRYMASGD 566 (704)
Q Consensus 503 ~~~~~V~~v~~~p~~~~-l~tgs~dg~I~iwd~~~~-~~~~~~--------------~~h~~~i~~l~~spdg~~l~sg~ 566 (704)
||.+.|.+|.|+|...+ |++|+.||.|++||++.. .|.+.+ ..|.+.+..++|+.+|.++++.+
T Consensus 186 GHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~g 265 (397)
T KOG4283|consen 186 GHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCG 265 (397)
T ss_pred cccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhcc
Confidence 99999999999998765 578999999999999854 333332 35778899999999999999999
Q ss_pred CCCeEEEEeCCCCe
Q 005277 567 EDGTIMMWDLASGR 580 (704)
Q Consensus 567 ~dg~I~iwdl~~~~ 580 (704)
.|..+++|+..+|+
T Consensus 266 td~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 266 TDDRIRVWNMESGR 279 (397)
T ss_pred CccceEEeecccCc
Confidence 99999999998875
No 118
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.4e-24 Score=229.69 Aligned_cols=280 Identities=18% Similarity=0.299 Sum_probs=218.9
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceee---ccCCccCeEEE
Q 005277 351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL---YQGHSGPVYSA 427 (704)
Q Consensus 351 ~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~h~~~V~~l 427 (704)
....+++..+++-..|+.++ .....||.+....... ..... -+.-.-.+..+
T Consensus 39 k~~~nAIs~nr~~~qiv~AG-rs~lklyai~~~~~~~------------------------~~~~~~k~kqn~~~S~~DV 93 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAG-RSLLKLYAINPNDFSE------------------------KCNHRFKTKQNKFYSAADV 93 (839)
T ss_pred ccccceEeecCCcceeEEec-ccceeeEeeCcccCCc------------------------ceeeecccccceeeehhhc
Confidence 34567777788877777664 4567788776421100 00000 01111345567
Q ss_pred EEcC-CCCEEEEEeCCCeEEEEeCCC---CceeEEeecCCcCeeEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeEEec
Q 005277 428 SFSP-LGDFILSSSADTTIRLWSTKL---NANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPLRIMA 502 (704)
Q Consensus 428 ~~sp-~~~~l~s~s~Dg~I~lwd~~~---~~~~~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~lwd~~~~~~~~~~~ 502 (704)
.|.. +.++|++++..|.|.+||+.. .+.+..|..|...|.++.|++ ..+++++||.||+|++||++.......+.
T Consensus 94 kW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~ 173 (839)
T KOG0269|consen 94 KWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFR 173 (839)
T ss_pred ccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccc
Confidence 7874 346899999999999999987 566778999999999999999 56789999999999999999998888998
Q ss_pred cCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCC-CcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCe
Q 005277 503 GHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSS-GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR 580 (704)
Q Consensus 503 ~~~~~V~~v~~~p-~~~~l~tgs~dg~I~iwd~~~-~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~ 580 (704)
+....|..|.|+| .+++++++...|.+++||+|. .++...+..|.++|.|+.|+|++.+||+||.|+.|+|||+.+++
T Consensus 174 ~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~ 253 (839)
T KOG0269|consen 174 SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSR 253 (839)
T ss_pred ccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCC
Confidence 8889999999998 578999999999999999985 56778889999999999999999999999999999999998765
Q ss_pred eeeeecCC-CceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCC-CEEEEEe--CCCcEEEEeCCCCc
Q 005277 581 CVTPLMGH-TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEG-SLLASGS--ADCTVKLWDVTTST 656 (704)
Q Consensus 581 ~~~~~~~h-~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g-~~lasgs--~Dg~V~iWd~~~~~ 656 (704)
.-....-+ ..+|..+.| -|.. ..||+++ .|-.|+|||+..+.
T Consensus 254 ~~~~~tInTiapv~rVkW----------------------------------RP~~~~hLAtcsmv~dtsV~VWDvrRPY 299 (839)
T KOG0269|consen 254 AKPKHTINTIAPVGRVKW----------------------------------RPARSYHLATCSMVVDTSVHVWDVRRPY 299 (839)
T ss_pred ccceeEEeecceeeeeee----------------------------------ccCccchhhhhhccccceEEEEeecccc
Confidence 43333323 368899999 4443 5677776 57899999998865
Q ss_pred cccccccccCccccccccccCCCCcCeEEEEEcc-CCcEEEEeecCCC
Q 005277 657 KVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSR-RNLLFAAGALSKT 703 (704)
Q Consensus 657 ~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~-~g~~La~gs~dgt 703 (704)
. +..++..|...|+.++|-. |-..|.+++.||+
T Consensus 300 I--------------P~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~t 333 (839)
T KOG0269|consen 300 I--------------PYATFLEHTDSVTGIAWDSGDRINLWSCSKDGT 333 (839)
T ss_pred c--------------cceeeeccCccccceeccCCCceeeEeecCccH
Confidence 3 3557778888999999965 5667888888875
No 119
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=4.3e-23 Score=199.47 Aligned_cols=268 Identities=15% Similarity=0.249 Sum_probs=215.8
Q ss_pred EEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCe
Q 005277 365 LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTT 444 (704)
Q Consensus 365 ~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~ 444 (704)
.|++|+....|.-+++........ . ...........+..|.++|++++.+ +.+++|||.|-+
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~---------~-------s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDet 64 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCT---------D-------SVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDET 64 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccc---------c-------ccceeeeccccccccccceeEEEec--ceeEeccCCCCc
Confidence 367888888777777664220000 0 0001122345678899999999998 999999999999
Q ss_pred EEEEeCCCCceeEEeecCCcCeeEEEEcCCCC--EEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEE
Q 005277 445 IRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH--YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIAT 522 (704)
Q Consensus 445 I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~--~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~t 522 (704)
|+|||+.....+..+..|.+.|+++.|.+.-. .+++|+.||.|.+|+......+..+.+|...|+.++.||.+++-++
T Consensus 65 I~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALs 144 (362)
T KOG0294|consen 65 IHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALS 144 (362)
T ss_pred EEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEE
Confidence 99999999999999999999999999998664 8999999999999999999999999999999999999999999999
Q ss_pred EECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeeh
Q 005277 523 GSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLL 602 (704)
Q Consensus 523 gs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~ 602 (704)
.+.|+.+++|++-+|+.-....- ....+.+.|+|.|.+++.++.+ .|-||.+.+......+... ..+.++.|
T Consensus 145 Vg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~-~r~l~~~~----- 216 (362)
T KOG0294|consen 145 VGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENP-KRILCATF----- 216 (362)
T ss_pred EcCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhcc-ccceeeee-----
Confidence 99999999999999887655532 2334559999999999888876 5999999887666555432 33444444
Q ss_pred ccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcC
Q 005277 603 VTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTP 682 (704)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 682 (704)
-++..|++|+.|+.|.+||..+.. ++..+..|...
T Consensus 217 ------------------------------l~~~~L~vG~d~~~i~~~D~ds~~---------------~~~~~~AH~~R 251 (362)
T KOG0294|consen 217 ------------------------------LDGSELLVGGDNEWISLKDTDSDT---------------PLTEFLAHENR 251 (362)
T ss_pred ------------------------------cCCceEEEecCCceEEEeccCCCc---------------cceeeecchhh
Confidence 357799999999999999998743 35677889999
Q ss_pred eEEEEE--ccCCcEEEEeecCCC
Q 005277 683 VYSLQF--SRRNLLFAAGALSKT 703 (704)
Q Consensus 683 V~~l~f--s~~g~~La~gs~dgt 703 (704)
|.++.+ .|++.+|++++.||.
T Consensus 252 VK~i~~~~~~~~~~lvTaSSDG~ 274 (362)
T KOG0294|consen 252 VKDIASYTNPEHEYLVTASSDGF 274 (362)
T ss_pred eeeeEEEecCCceEEEEeccCce
Confidence 999985 567899999999983
No 120
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=1.5e-25 Score=236.85 Aligned_cols=223 Identities=26% Similarity=0.512 Sum_probs=207.0
Q ss_pred EeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEE
Q 005277 347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (704)
Q Consensus 347 ~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 426 (704)
+.-|...|.|+..-..++.+++|+.|-.+-+|.+.. ......+.+|.++|.+
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~k----------------------------p~~i~S~~~hespIeS 75 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGK----------------------------PNAITSLTGHESPIES 75 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccC----------------------------CchhheeeccCCccee
Confidence 445677788888866789999999999999999765 1233348899999999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCC
Q 005277 427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS 506 (704)
Q Consensus 427 l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~ 506 (704)
+.|+++..+|+.|+.+|+|++||+...+.++++.+|...+.++.|+|-+.|+++|+.|+.+++||++...+...+.+|..
T Consensus 76 l~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~ 155 (825)
T KOG0267|consen 76 LTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTR 155 (825)
T ss_pred eecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeec
Q 005277 507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM 586 (704)
Q Consensus 507 ~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~ 586 (704)
.|.++.|+|+|.+++.|+.|.+++|||...|+....|..|.+.+.++.|+|..-.+++|+.|+++++||+++...+....
T Consensus 156 vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~ 235 (825)
T KOG0267|consen 156 VVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGK 235 (825)
T ss_pred eeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred CCCceeeeeee
Q 005277 587 GHTSCVWTLAY 597 (704)
Q Consensus 587 ~h~~~V~sl~~ 597 (704)
.....|.+..|
T Consensus 236 ~~~~~v~~~~f 246 (825)
T KOG0267|consen 236 PETDGVRSLAF 246 (825)
T ss_pred CccCCceeeee
Confidence 88889999999
No 121
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=9.8e-24 Score=203.26 Aligned_cols=290 Identities=21% Similarity=0.318 Sum_probs=223.1
Q ss_pred eEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccC----CccccccccCCCCCC---CCccc
Q 005277 331 RVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKL----GQQAVSSGLQGENDT---TPRED 403 (704)
Q Consensus 331 ~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~----~~~~~~~~~~~~~~~---~~~~~ 403 (704)
...+|+.. ...|+.++.+|.+.|+|+.|++.+.++++|+.|++-.||...-. ............... ....+
T Consensus 171 TA~iWs~E-sg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d 249 (481)
T KOG0300|consen 171 TARIWSLE-SGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRD 249 (481)
T ss_pred ceeEEeec-cccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccc
Confidence 34455432 24678889999999999999999999999999999999973221 111000000000000 00000
Q ss_pred cc---CCC--CCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEE
Q 005277 404 II---GPN--GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF 478 (704)
Q Consensus 404 ~~---~~~--~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l 478 (704)
.. ..+ .-..+...+.||.+.|.+..|...|+.+++++.|.+..+||++++..+..+.||....+.++-+|..+++
T Consensus 250 ~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLV 329 (481)
T KOG0300|consen 250 TDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLV 329 (481)
T ss_pred cccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEE
Confidence 00 001 1123456788999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCeEEEEECCC-CceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCc-EEEEeecCCCCEEEEEEe
Q 005277 479 ASSSHDRTARIWSMDR-IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE-CVRIFIGHRSMILSLAMS 556 (704)
Q Consensus 479 ~sgs~dg~i~lwd~~~-~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~-~~~~~~~h~~~i~~l~~s 556 (704)
++++.|.+.++||++. ...+..|.||...|+++.|..+ ..+++|+.|.+|++||+++.+ ++.++ ....+++.++.+
T Consensus 330 vTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATI-RtdS~~NRvavs 407 (481)
T KOG0300|consen 330 VTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATI-RTDSPANRVAVS 407 (481)
T ss_pred EEeccCceeEeccchhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCcceee-ecCCccceeEee
Confidence 9999999999999974 4567889999999999999765 568899999999999999765 44444 356789999999
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCeee----eeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccC
Q 005277 557 PDGRYMASGDEDGTIMMWDLASGRCV----TPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCAS 632 (704)
Q Consensus 557 pdg~~l~sg~~dg~I~iwdl~~~~~~----~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 632 (704)
..+..++.-.++..|++||+...+.. ..-++|...|.|.+|.-- .
T Consensus 408 ~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~ee-------------------------------h 456 (481)
T KOG0300|consen 408 KGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEE-------------------------------H 456 (481)
T ss_pred cCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeecccc-------------------------------C
Confidence 88889999999999999998654332 133689999999999210 2
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCC
Q 005277 633 CEGSLLASGSADCTVKLWDVTTS 655 (704)
Q Consensus 633 ~~g~~lasgs~Dg~V~iWd~~~~ 655 (704)
|- .-|+++|-|..+.-|++...
T Consensus 457 p~-cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 457 PA-CNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred cc-cccccccccceeeeeEeccc
Confidence 22 45789999999999998764
No 122
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=1.3e-22 Score=218.00 Aligned_cols=327 Identities=21% Similarity=0.318 Sum_probs=229.1
Q ss_pred CeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCC
Q 005277 330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG 409 (704)
Q Consensus 330 ~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (704)
.++.+|+.... ...|++.++..+|+|+.-+|--..+|.|..+|.|.|+++..
T Consensus 182 G~lql~Nvrt~-K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~--------------------------- 233 (910)
T KOG1539|consen 182 GRLQLWNVRTG-KVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKF--------------------------- 233 (910)
T ss_pred CcEEEEEeccC-cEEEEecccccceeEeccCCcceEEEEeccCceEEEEEccc---------------------------
Confidence 46667765543 34678889999999999999999999999999999999986
Q ss_pred CccceeeccCCccCeEEEEEcCCCCE-EEEEeCCCeEEEEeCCCCceeEEee-cCCcCeeEEEEcCCCCEEEEEeCCCeE
Q 005277 410 RKRSYTLYQGHSGPVYSASFSPLGDF-ILSSSADTTIRLWSTKLNANLVCYK-GHNYPVWDVQFNPQGHYFASSSHDRTA 487 (704)
Q Consensus 410 ~~~~~~~~~~h~~~V~~l~~sp~~~~-l~s~s~Dg~I~lwd~~~~~~~~~~~-~h~~~V~~v~~sp~~~~l~sgs~dg~i 487 (704)
...+..+....+.|++++|..||+. +++|+..|.+.+||++..+.+.... .|.+.|....|.|....+++++.|+.+
T Consensus 234 -dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSl 312 (910)
T KOG1539|consen 234 -DKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSL 312 (910)
T ss_pred -CcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCce
Confidence 2233444433599999999999985 5577778999999999766554444 565666666666666666666666665
Q ss_pred EEEECCCC------------------------------------------------------c-----------------
Q 005277 488 RIWSMDRI------------------------------------------------------Q----------------- 496 (704)
Q Consensus 488 ~lwd~~~~------------------------------------------------------~----------------- 496 (704)
++|-.+++ +
T Consensus 313 k~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~ 392 (910)
T KOG1539|consen 313 KVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEK 392 (910)
T ss_pred eEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhh
Confidence 55532200 0
Q ss_pred ----eeEE--------------------------------------e-----ccCCCCeeEEEEcCCCCEEEEEECCCcE
Q 005277 497 ----PLRI--------------------------------------M-----AGHLSDVDCVRWHINCNYIATGSSDKTV 529 (704)
Q Consensus 497 ----~~~~--------------------------------------~-----~~~~~~V~~v~~~p~~~~l~tgs~dg~I 529 (704)
++.. + ......+++++.++.|++.+.|++.|+|
T Consensus 393 ~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~I 472 (910)
T KOG1539|consen 393 LKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTI 472 (910)
T ss_pred hcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeE
Confidence 0000 0 0011456788888999999999999999
Q ss_pred EEEeCCCCcEEEEe---ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeee----eeeeh
Q 005277 530 RLWDVSSGECVRIF---IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY----RFLLL 602 (704)
Q Consensus 530 ~iwd~~~~~~~~~~---~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~----~~~~~ 602 (704)
-+|++++|-....| ..|.++|++++...-++.+++++.+|.+.+||..+...+..+.-. .++..+.. .....
T Consensus 473 d~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~-~~~~~iv~hr~s~l~a~ 551 (910)
T KOG1539|consen 473 DRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLG-SSITGIVYHRVSDLLAI 551 (910)
T ss_pred EEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccC-CCcceeeeeehhhhhhh
Confidence 99999999888888 489999999999888899999999999999999887655554311 11112211 11111
Q ss_pred ccccc-cccccccccc--eee-eeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCC
Q 005277 603 VTNAY-LKISDKVSTG--FLF-YSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT 678 (704)
Q Consensus 603 ~~~~~-~~~~~~~~~~--~~~-~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~ 678 (704)
..+.+ ..+.+..... ..+ .....++..++||||++|++++.|++|++||+.++..+ ..+ .
T Consensus 552 ~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lI---------------D~~-~ 615 (910)
T KOG1539|consen 552 ALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLI---------------DGL-L 615 (910)
T ss_pred hcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCccee---------------eeE-e
Confidence 11111 1111111000 001 12335556667999999999999999999999998643 222 3
Q ss_pred CCcCeEEEEEccCCcEEEEeecCC
Q 005277 679 KSTPVYSLQFSRRNLLFAAGALSK 702 (704)
Q Consensus 679 ~~~~V~~l~fs~~g~~La~gs~dg 702 (704)
-..+..+++|||+|.+||+...|.
T Consensus 616 vd~~~~sls~SPngD~LAT~Hvd~ 639 (910)
T KOG1539|consen 616 VDSPCTSLSFSPNGDFLATVHVDQ 639 (910)
T ss_pred cCCcceeeEECCCCCEEEEEEecC
Confidence 467899999999999999988774
No 123
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=2.6e-23 Score=218.92 Aligned_cols=325 Identities=15% Similarity=0.226 Sum_probs=246.2
Q ss_pred CeEeecCCCCCC--eEEEEEeeCCCCEEEEEEcCC-----------CCEEEEEeCCCcEEEEEcccCCccccccc--cCC
Q 005277 330 NRVHLSSAALPS--VSFYTFINTHNGLNCASISQD-----------GSLVAGGFSDSSLKVWDMAKLGQQAVSSG--LQG 394 (704)
Q Consensus 330 ~~~~l~~~~~p~--~~~~~~~~~~~~V~~~~fs~d-----------g~~lasg~~dg~I~iwdl~~~~~~~~~~~--~~~ 394 (704)
..+++|+...+. -.++.++.|...|+.+.--|. ...+.+++.|++||+|++.......+... ...
T Consensus 346 hSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~ 425 (1080)
T KOG1408|consen 346 HSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSA 425 (1080)
T ss_pred ceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchh
Confidence 457788765443 345677888888887765441 23588999999999999986322222110 000
Q ss_pred CCCCCC----cccccC---CCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCee
Q 005277 395 ENDTTP----REDIIG---PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVW 467 (704)
Q Consensus 395 ~~~~~~----~~~~~~---~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~ 467 (704)
.....+ ....+. .....+......+....|.+++.+|++++|++|..-|+++||++..-.....+..|...|.
T Consensus 426 ~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEil 505 (1080)
T KOG1408|consen 426 NLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEIL 505 (1080)
T ss_pred hhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeE
Confidence 000000 000000 0001111122334556799999999999999999999999999999888889999999999
Q ss_pred EEEEcC---CCCEEEEEeCCCeEEEEECCC-CceeEEeccCCCCeeEEEEcCCC--CEEEEEECCCcEEEEeCCCCcEEE
Q 005277 468 DVQFNP---QGHYFASSSHDRTARIWSMDR-IQPLRIMAGHLSDVDCVRWHINC--NYIATGSSDKTVRLWDVSSGECVR 541 (704)
Q Consensus 468 ~v~~sp---~~~~l~sgs~dg~i~lwd~~~-~~~~~~~~~~~~~V~~v~~~p~~--~~l~tgs~dg~I~iwd~~~~~~~~ 541 (704)
|+.|+. ..+++|+++.|+.|++||+.. ..+++.+.+|.+.|++|.|.-+| ..+++++.|+.|.+--.+.....+
T Consensus 506 cLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~ 585 (1080)
T KOG1408|consen 506 CLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGR 585 (1080)
T ss_pred EEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCce
Confidence 999986 457899999999999999965 45778889999999999999877 778888999888554333222233
Q ss_pred EeecC-----CCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecC---CCceeeeeeeeeeehccccccccccc
Q 005277 542 IFIGH-----RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG---HTSCVWTLAYRFLLLVTNAYLKISDK 613 (704)
Q Consensus 542 ~~~~h-----~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~---h~~~V~sl~~~~~~~~~~~~~~~~~~ 613 (704)
.|..| ...++.|+..|..+++++++.|..|+|||+.+|+..+.+++ |.+....+..
T Consensus 586 ~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~l---------------- 649 (1080)
T KOG1408|consen 586 LFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVIL---------------- 649 (1080)
T ss_pred eccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEE----------------
Confidence 34333 34689999999999999999999999999999999999975 5566656665
Q ss_pred cccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCc
Q 005277 614 VSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL 693 (704)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~ 693 (704)
.|.|.+||+...|.++.++|+.+++ ++.+..+|..-|+.|.|++|-+
T Consensus 650 ------------------DPSgiY~atScsdktl~~~Df~sgE---------------cvA~m~GHsE~VTG~kF~nDCk 696 (1080)
T KOG1408|consen 650 ------------------DPSGIYLATSCSDKTLCFVDFVSGE---------------CVAQMTGHSEAVTGVKFLNDCK 696 (1080)
T ss_pred ------------------CCCccEEEEeecCCceEEEEeccch---------------hhhhhcCcchheeeeeecccch
Confidence 8999999999999999999999985 4778889999999999999999
Q ss_pred EEEEeecCCC
Q 005277 694 LFAAGALSKT 703 (704)
Q Consensus 694 ~La~gs~dgt 703 (704)
.|.+.+.||+
T Consensus 697 HlISvsgDgC 706 (1080)
T KOG1408|consen 697 HLISVSGDGC 706 (1080)
T ss_pred hheeecCCce
Confidence 9999999885
No 124
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=3.8e-24 Score=217.27 Aligned_cols=259 Identities=20% Similarity=0.312 Sum_probs=215.7
Q ss_pred eEeecCCCCC----CeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccC
Q 005277 331 RVHLSSAALP----SVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG 406 (704)
Q Consensus 331 ~~~l~~~~~p----~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (704)
.|++|+..-| .+..+-.++..+-|.++.+.|||+.|++|+.-.++.|||+......
T Consensus 441 cVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTpr-------------------- 500 (705)
T KOG0639|consen 441 CVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPR-------------------- 500 (705)
T ss_pred eEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcc--------------------
Confidence 4566655433 2223344566677999999999999999999999999999762211
Q ss_pred CCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCe
Q 005277 407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT 486 (704)
Q Consensus 407 ~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~ 486 (704)
....+....-.+++++.+||.+..++|..||.|.|||+.....+..+++|...+.||..+++|..+++|+-|++
T Consensus 501 ------ikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDnt 574 (705)
T KOG0639|consen 501 ------IKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT 574 (705)
T ss_pred ------hhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccc
Confidence 11122233356889999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEe
Q 005277 487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD 566 (704)
Q Consensus 487 i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~ 566 (704)
||.||++.+..+.... ..+.|.++.++|++.++++|-.++.+.+.... +.....+..|..-|.++.|.+.|+|+++.+
T Consensus 575 vRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cGkwfvStG 652 (705)
T KOG0639|consen 575 VRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWFVSTG 652 (705)
T ss_pred eeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecC-CccceeecccccEEEEEEecccCceeeecC
Confidence 9999999987776544 45789999999999999999999999998864 444455667999999999999999999999
Q ss_pred CCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCc
Q 005277 567 EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCT 646 (704)
Q Consensus 567 ~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~ 646 (704)
.|+.+..|...-|..+...+ ..++|.+++. |.+.++|+||+.|..
T Consensus 653 kDnlLnawrtPyGasiFqsk-E~SsVlsCDI----------------------------------S~ddkyIVTGSGdkk 697 (705)
T KOG0639|consen 653 KDNLLNAWRTPYGASIFQSK-ESSSVLSCDI----------------------------------SFDDKYIVTGSGDKK 697 (705)
T ss_pred chhhhhhccCccccceeecc-ccCcceeeee----------------------------------ccCceEEEecCCCcc
Confidence 99999999998887776654 3567888777 899999999999998
Q ss_pred EEEEeC
Q 005277 647 VKLWDV 652 (704)
Q Consensus 647 V~iWd~ 652 (704)
..||.+
T Consensus 698 ATVYeV 703 (705)
T KOG0639|consen 698 ATVYEV 703 (705)
T ss_pred eEEEEE
Confidence 888875
No 125
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.4e-22 Score=211.89 Aligned_cols=278 Identities=20% Similarity=0.290 Sum_probs=228.4
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeecc-CCccCeEEEE
Q 005277 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ-GHSGPVYSAS 428 (704)
Q Consensus 350 ~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~ 428 (704)
.+.+|.|++||.+.+.||+|-.||.|.||++... ......+. +-.+.|.+++
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~---------------------------w~~~~vi~g~~drsIE~L~ 76 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN---------------------------WFLEPVIHGPEDRSIESLA 76 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCC---------------------------ceeeEEEecCCCCceeeEE
Confidence 4678999999999999999999999999998751 11222333 3457899999
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCcee--EEeccCCC
Q 005277 429 FSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL--RIMAGHLS 506 (704)
Q Consensus 429 ~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~--~~~~~~~~ 506 (704)
|++ +..|+|.+.+|.|.-||+.+.+....+....++||+++.+|.+..++.|+.||.+..++...+... +.+....+
T Consensus 77 W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~s 155 (691)
T KOG2048|consen 77 WAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKS 155 (691)
T ss_pred Ecc-CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccc
Confidence 995 556899999999999999999999999999999999999999999999999998888887665443 44455678
Q ss_pred CeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEee-----c---CCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 005277 507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-----G---HRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578 (704)
Q Consensus 507 ~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-----~---h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~ 578 (704)
.|.+++|+|++..|++|+.||.|++||+.++..+.... . ...-|.++.|-.+ ..|++|...|+|.+||...
T Consensus 156 RvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~ 234 (691)
T KOG2048|consen 156 RVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIF 234 (691)
T ss_pred eEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccC
Confidence 99999999999999999999999999999998776322 1 1223566666645 4789999999999999999
Q ss_pred CeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccc
Q 005277 579 GRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKV 658 (704)
Q Consensus 579 ~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~ 658 (704)
+.++..+..|.+.|.+++. .+++++++++|.|+.|.-+...+....
T Consensus 235 gTLiqS~~~h~adVl~Lav----------------------------------~~~~d~vfsaGvd~~ii~~~~~~~~~~ 280 (691)
T KOG2048|consen 235 GTLIQSHSCHDADVLALAV----------------------------------ADNEDRVFSAGVDPKIIQYSLTTNKSE 280 (691)
T ss_pred cchhhhhhhhhcceeEEEE----------------------------------cCCCCeEEEccCCCceEEEEecCCccc
Confidence 9999999999999999998 889999999999999999988776531
Q ss_pred cccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 659 LKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 659 ~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
+........|...|.+++..++ .|.+|+.|.+
T Consensus 281 -----------wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~ 312 (691)
T KOG2048|consen 281 -----------WVINSRRDLHAHDVRSMAVIEN--ALISGGRDFT 312 (691)
T ss_pred -----------eeeeccccCCcccceeeeeecc--eEEecceeeE
Confidence 2223344567778999988877 7778877753
No 126
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.91 E-value=8e-23 Score=197.98 Aligned_cols=286 Identities=21% Similarity=0.343 Sum_probs=218.3
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEc---
Q 005277 354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS--- 430 (704)
Q Consensus 354 V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s--- 430 (704)
...+.|||||..|++-+.|..+.+|++.......... .+................|+..+|-
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~---------------~~~~~~~~~~~r~~eg~tvydy~wYs~M 116 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKAD---------------GPLNFSKHLSYRYQEGETVYDYCWYSRM 116 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCC---------------CccccccceeEEeccCCEEEEEEeeecc
Confidence 4578999999999999999999999987521111000 0000011111112234678888886
Q ss_pred ----CCCCEEEEEeCCCeEEEEeCCCCceeEEeec--CC---cCeeEEEEcCCCCEEEEEeCCCeEEEEEC-CCCceeEE
Q 005277 431 ----PLGDFILSSSADTTIRLWSTKLNANLVCYKG--HN---YPVWDVQFNPQGHYFASSSHDRTARIWSM-DRIQPLRI 500 (704)
Q Consensus 431 ----p~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~--h~---~~V~~v~~sp~~~~l~sgs~dg~i~lwd~-~~~~~~~~ 500 (704)
|+..++++++.+.-|++||.-+++....|++ |. ....+++|+|||.+|++| ..+.|+++|+ +.+.....
T Consensus 117 ~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~v 195 (406)
T KOG2919|consen 117 KSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPV 195 (406)
T ss_pred ccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcc
Confidence 5677899999999999999999998888764 32 235689999999999877 4589999999 44432221
Q ss_pred e-------ccCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEe-CCCeE
Q 005277 501 M-------AGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGTI 571 (704)
Q Consensus 501 ~-------~~~~~~V~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~-~dg~I 571 (704)
+ .+..+-+.|++|||- ...+++|+....+-||.-..+.++..+-+|.+.|+.++|.++|+.|++|+ .|..|
T Consensus 196 y~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkI 275 (406)
T KOG2919|consen 196 YTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKI 275 (406)
T ss_pred hhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeE
Confidence 1 133667899999994 56999999999999998888999999999999999999999999999987 46789
Q ss_pred EEEeCCC-CeeeeeecCCCc-eeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEE
Q 005277 572 MMWDLAS-GRCVTPLMGHTS-CVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKL 649 (704)
Q Consensus 572 ~iwdl~~-~~~~~~~~~h~~-~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~i 649 (704)
.+||++. +.++..+..|.+ .-..|-|.. .|++++|++|+.||.|++
T Consensus 276 l~WDiR~~~~pv~~L~rhv~~TNQRI~FDl--------------------------------d~~~~~LasG~tdG~V~v 323 (406)
T KOG2919|consen 276 LCWDIRYSRDPVYALERHVGDTNQRILFDL--------------------------------DPKGEILASGDTDGSVRV 323 (406)
T ss_pred EEEeehhccchhhhhhhhccCccceEEEec--------------------------------CCCCceeeccCCCccEEE
Confidence 9999986 456677777765 444444522 889999999999999999
Q ss_pred EeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecC
Q 005277 650 WDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS 701 (704)
Q Consensus 650 Wd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~d 701 (704)
||++.... .+..+..+...|..|+++|--.++|+++..
T Consensus 324 wdlk~~gn--------------~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 324 WDLKDLGN--------------EVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred EecCCCCC--------------cccccccccccccceecCcccceeeeccCc
Confidence 99988432 245666788889999999999999998754
No 127
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3.4e-23 Score=209.88 Aligned_cols=221 Identities=21% Similarity=0.364 Sum_probs=195.2
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEE
Q 005277 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (704)
Q Consensus 350 ~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 429 (704)
-++.|.|++-+|+|.+|+.|+..|.|.+|.+.+ +.....+.+|-.+|+|+.|
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelss----------------------------G~LL~v~~aHYQ~ITcL~f 131 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSS----------------------------GILLNVLSAHYQSITCLKF 131 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEecc----------------------------ccHHHHHHhhccceeEEEE
Confidence 357899999999999999999999999999987 3455667889999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCC---------CCceeEEeecCCcCeeEEEEcCC--CCEEEEEeCCCeEEEEECCCCcee
Q 005277 430 SPLGDFILSSSADTTIRLWSTK---------LNANLVCYKGHNYPVWDVQFNPQ--GHYFASSSHDRTARIWSMDRIQPL 498 (704)
Q Consensus 430 sp~~~~l~s~s~Dg~I~lwd~~---------~~~~~~~~~~h~~~V~~v~~sp~--~~~l~sgs~dg~i~lwd~~~~~~~ 498 (704)
+-|+.+|+|||.||.|.+|++- +-+....+..|+-+|+++...+. ..+++|+|.|.++++||+..+..+
T Consensus 132 s~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LL 211 (476)
T KOG0646|consen 132 SDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLL 211 (476)
T ss_pred eCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceee
Confidence 9999999999999999999863 34567888999999999998874 468999999999999999999888
Q ss_pred EEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC----------------CcEEEEeecCCC--CEEEEEEecCCC
Q 005277 499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS----------------GECVRIFIGHRS--MILSLAMSPDGR 560 (704)
Q Consensus 499 ~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~----------------~~~~~~~~~h~~--~i~~l~~spdg~ 560 (704)
..+. ....+.+++..|-+..+++|+.+|.|.+.++.. +..+..+.||.+ .|+|++++-||.
T Consensus 212 lti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt 290 (476)
T KOG0646|consen 212 LTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT 290 (476)
T ss_pred EEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCcc
Confidence 7776 567899999999999999999999999988743 234566789988 999999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeee
Q 005277 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRF 599 (704)
Q Consensus 561 ~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~ 599 (704)
.|++|+.||.++|||+.+.++++++....++|+.+.+++
T Consensus 291 lLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~ 329 (476)
T KOG0646|consen 291 LLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINP 329 (476)
T ss_pred EEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeec
Confidence 999999999999999999999999887778999888743
No 128
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=1.6e-22 Score=209.82 Aligned_cols=295 Identities=19% Similarity=0.327 Sum_probs=232.0
Q ss_pred CCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeec
Q 005277 338 ALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY 417 (704)
Q Consensus 338 ~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (704)
+.|..|.+.+.+|.+.|.|+...|.|.+||+|+.||+|+||.+.++ +++...
T Consensus 387 PFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg----------------------------Rcvr~~ 438 (733)
T KOG0650|consen 387 PFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATG----------------------------RCVRTV 438 (733)
T ss_pred CCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecc----------------------------eEEEEE
Confidence 6788999999999999999999999999999999999999999873 233222
Q ss_pred cCCccCeEEEEEcCCCCE--EEEEeCCCeEEEEeCCCC-------------------------------------ceeEE
Q 005277 418 QGHSGPVYSASFSPLGDF--ILSSSADTTIRLWSTKLN-------------------------------------ANLVC 458 (704)
Q Consensus 418 ~~h~~~V~~l~~sp~~~~--l~s~s~Dg~I~lwd~~~~-------------------------------------~~~~~ 458 (704)
. ..+.|.|++|+|.+.. |+++-. .++.|-+..-| .-++.
T Consensus 439 ~-~d~~I~~vaw~P~~~~~vLAvA~~-~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~ 516 (733)
T KOG0650|consen 439 Q-FDSEIRSVAWNPLSDLCVLAVAVG-ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCI 516 (733)
T ss_pred e-ecceeEEEEecCCCCceeEEEEec-CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEE
Confidence 2 3357999999997652 333322 23434332211 01223
Q ss_pred eecCCcCeeEEEEcCCCCEEEEEeC---CCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC
Q 005277 459 YKGHNYPVWDVQFNPQGHYFASSSH---DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS 535 (704)
Q Consensus 459 ~~~h~~~V~~v~~sp~~~~l~sgs~---dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~ 535 (704)
.-.|..+|..+.|+..|.||++... ...|.|.++.......-|....+.|.++.|||...+|++++ ...|++||+.
T Consensus 517 ~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~ 595 (733)
T KOG0650|consen 517 VIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLS 595 (733)
T ss_pred EEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehh
Confidence 3357889999999999999999864 46789999987766666766778899999999999999986 5679999999
Q ss_pred CCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCC-eeeeeecCCCceeeeeeeeeeehcccccccccccc
Q 005277 536 SGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG-RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKV 614 (704)
Q Consensus 536 ~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~-~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~ 614 (704)
.+..+..+......|.+++++|.|..|+.|+.|+.+..+|+.-+ ++.++++-|...+++++|
T Consensus 596 kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~----------------- 658 (733)
T KOG0650|consen 596 KQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAF----------------- 658 (733)
T ss_pred HHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhh-----------------
Confidence 88887777777788999999999999999999999999999754 677888999999999999
Q ss_pred ccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcC----eEEEEEcc
Q 005277 615 STGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTP----VYSLQFSR 690 (704)
Q Consensus 615 ~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----V~~l~fs~ 690 (704)
++.-.++++|+.||++.|+.-.--..+... .-+-++..+++|... |..+.|+|
T Consensus 659 -----------------H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qn------pliVPlK~L~gH~~~~~~gVLd~~wHP 715 (733)
T KOG0650|consen 659 -----------------HKRYPLFASGSDDGTVIVFHGMVYNDLLQN------PLIVPLKRLRGHEKTNDLGVLDTIWHP 715 (733)
T ss_pred -----------------ccccceeeeecCCCcEEEEeeeeehhhhcC------CceEeeeeccCceeecccceEeecccC
Confidence 888889999999999999974432221110 112346667777554 99999999
Q ss_pred CCcEEEEeecCCC
Q 005277 691 RNLLFAAGALSKT 703 (704)
Q Consensus 691 ~g~~La~gs~dgt 703 (704)
...+|.+++.||+
T Consensus 716 ~qpWLfsAGAd~t 728 (733)
T KOG0650|consen 716 RQPWLFSAGADGT 728 (733)
T ss_pred CCceEEecCCCce
Confidence 9999999999986
No 129
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.3e-22 Score=204.48 Aligned_cols=260 Identities=20% Similarity=0.303 Sum_probs=191.9
Q ss_pred EEEEEcC-------CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCC--CCccceeeccCCccCeE
Q 005277 355 NCASISQ-------DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN--GRKRSYTLYQGHSGPVY 425 (704)
Q Consensus 355 ~~~~fs~-------dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~h~~~V~ 425 (704)
.|++|-. .|+++|.|+.|..|.|||+.-.......-.+. ...+.. ...+....-.+|+..|.
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LG---------s~~sk~~~k~~k~~~~~~gHTdavl 247 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLG---------SKASKKKKKKGKRSNSASGHTDAVL 247 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeec---------hhhhhhhhhhcccccccccchHHHH
Confidence 5666643 37899999999999999987421110000000 000000 00111222457999999
Q ss_pred EEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeEEecc
Q 005277 426 SASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPLRIMAG 503 (704)
Q Consensus 426 ~l~~sp~~~-~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~ 503 (704)
+++|+..-+ .|+|||.|.+|++||+.++++..++..|...|.++.|+| ...++++|+.|++|.+.|++........-.
T Consensus 248 ~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk 327 (463)
T KOG0270|consen 248 ALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK 327 (463)
T ss_pred HHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE
Confidence 999987654 678999999999999999999999999999999999999 577899999999999999986433333333
Q ss_pred CCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCC-CcEEEEeecCCCCEEEEEEecC-CCEEEEEeCCCeEEEEeCCCCe
Q 005277 504 HLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSS-GECVRIFIGHRSMILSLAMSPD-GRYMASGDEDGTIMMWDLASGR 580 (704)
Q Consensus 504 ~~~~V~~v~~~p~-~~~l~tgs~dg~I~iwd~~~-~~~~~~~~~h~~~i~~l~~spd-g~~l~sg~~dg~I~iwdl~~~~ 580 (704)
..+.|..++|+|. ...+++++.||+|+-+|+|. ++++++...|.++|+++++++. ..++++++.|+.|++|++..-.
T Consensus 328 ~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~ 407 (463)
T KOG0270|consen 328 FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS 407 (463)
T ss_pred eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCC
Confidence 5578999999985 46778888999999999996 5999999999999999999985 4578899999999999986543
Q ss_pred eeeeecCCC---ceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCC-CCEEEEEeCCCcEEEEeCCCCc
Q 005277 581 CVTPLMGHT---SCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCE-GSLLASGSADCTVKLWDVTTST 656 (704)
Q Consensus 581 ~~~~~~~h~---~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-g~~lasgs~Dg~V~iWd~~~~~ 656 (704)
.-. ...|. +...|.++ .|+ ..+++.||..+.++|||+.+..
T Consensus 408 ~~~-v~~~~~~~~rl~c~~~----------------------------------~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 408 PKS-VKEHSFKLGRLHCFAL----------------------------------DPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred Ccc-cccccccccceeeccc----------------------------------CCCcceEEEecCccceEEEeecccCh
Confidence 311 11122 11222222 333 3477888888999999998876
Q ss_pred cc
Q 005277 657 KV 658 (704)
Q Consensus 657 ~~ 658 (704)
.+
T Consensus 453 ~V 454 (463)
T KOG0270|consen 453 PV 454 (463)
T ss_pred hH
Confidence 54
No 130
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.90 E-value=4.1e-22 Score=210.34 Aligned_cols=327 Identities=24% Similarity=0.348 Sum_probs=241.6
Q ss_pred CeEeecCCCCCC-eEEEEEeeCCCCEEEEEEcCCCC---EEEEEeCCCcEEEEEcccCCccccccccCCCCCCC-Ccccc
Q 005277 330 NRVHLSSAALPS-VSFYTFINTHNGLNCASISQDGS---LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTT-PREDI 404 (704)
Q Consensus 330 ~~~~l~~~~~p~-~~~~~~~~~~~~V~~~~fs~dg~---~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~-~~~~~ 404 (704)
..+.+.+....+ .....+.+|.+-|.+++|..-+. +||+|++|.+||||.+........ ......... +....
T Consensus 169 ~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~--~~~e~~~t~~~~~~~ 246 (764)
T KOG1063|consen 169 FVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDS--NEREDSLTTLSNLPV 246 (764)
T ss_pred eEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccc--cccccccccccCCce
Confidence 344554443222 33446789999999999987544 899999999999999865331110 000000000 00000
Q ss_pred cCCCC----CccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee----EE---eecCCcCeeEEEEcC
Q 005277 405 IGPNG----RKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL----VC---YKGHNYPVWDVQFNP 473 (704)
Q Consensus 405 ~~~~~----~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~----~~---~~~h~~~V~~v~~sp 473 (704)
+.... .......+.||...|+++.|+|.+..|+++|.|.++.+|......-+ .. ..+.....++..|+|
T Consensus 247 f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~ 326 (764)
T KOG1063|consen 247 FMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP 326 (764)
T ss_pred eeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcC
Confidence 00000 00111346799999999999999999999999999999987755322 11 223455689999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCC---ceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC---------------
Q 005277 474 QGHYFASSSHDRTARIWSMDRI---QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS--------------- 535 (704)
Q Consensus 474 ~~~~l~sgs~dg~i~lwd~~~~---~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~--------------- 535 (704)
+++.+++-+..|..++|..... .+...+.||...|..+.|+|.|.+|++.+.|.+-|++-.-
T Consensus 327 n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiH 406 (764)
T KOG1063|consen 327 NSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIH 406 (764)
T ss_pred CCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccc
Confidence 9999999999999999983321 3445567999999999999999999999999888876421
Q ss_pred ----------C----------CcEEE------------------------------------------------------
Q 005277 536 ----------S----------GECVR------------------------------------------------------ 541 (704)
Q Consensus 536 ----------~----------~~~~~------------------------------------------------------ 541 (704)
+ .+.++
T Consensus 407 GyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~ 486 (764)
T KOG1063|consen 407 GYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAA 486 (764)
T ss_pred cccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccc
Confidence 0 00111
Q ss_pred ---------------------------------EeecCCCCEEEEEEecCCCEEEEEeCC-----CeEEEEeCCCCeeee
Q 005277 542 ---------------------------------IFIGHRSMILSLAMSPDGRYMASGDED-----GTIMMWDLASGRCVT 583 (704)
Q Consensus 542 ---------------------------------~~~~h~~~i~~l~~spdg~~l~sg~~d-----g~I~iwdl~~~~~~~ 583 (704)
.+.||...|++++.+|+|+++|+++.. ..|++|+..+...+.
T Consensus 487 ~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~ 566 (764)
T KOG1063|consen 487 VCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQ 566 (764)
T ss_pred eeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhh
Confidence 024788899999999999999998854 469999999999999
Q ss_pred eecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccccccc
Q 005277 584 PLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEE 663 (704)
Q Consensus 584 ~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~ 663 (704)
.+.+|+-.|+.+.| ||||++|++.|.|.++.+|.........
T Consensus 567 ~L~~HsLTVT~l~F----------------------------------Spdg~~LLsvsRDRt~sl~~~~~~~~~e---- 608 (764)
T KOG1063|consen 567 ELEGHSLTVTRLAF----------------------------------SPDGRYLLSVSRDRTVSLYEVQEDIKDE---- 608 (764)
T ss_pred eecccceEEEEEEE----------------------------------CCCCcEEEEeecCceEEeeeeecccchh----
Confidence 99999999999999 9999999999999999999986543210
Q ss_pred ccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 664 KSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 664 ~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
........|..-|.+.+|+|++.++|++|.|++
T Consensus 609 -------~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~ 641 (764)
T KOG1063|consen 609 -------FRFACLKAHTRIIWDCSWSPDEKYFATASRDKK 641 (764)
T ss_pred -------hhhccccccceEEEEcccCcccceeEEecCCce
Confidence 114457789999999999999999999999975
No 131
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.90 E-value=9.9e-23 Score=214.55 Aligned_cols=246 Identities=22% Similarity=0.403 Sum_probs=212.5
Q ss_pred eeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEE
Q 005277 348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA 427 (704)
Q Consensus 348 ~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 427 (704)
.....++.|++.||+|++||+|..-|.++||++.. .........|...|.|+
T Consensus 456 ~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~----------------------------l~~~~~~eAHesEilcL 507 (1080)
T KOG1408|consen 456 CDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQE----------------------------LEYTCFMEAHESEILCL 507 (1080)
T ss_pred cCcccceEEEEECCCcceecccCccCceEEEEehh----------------------------hhhhhheecccceeEEE
Confidence 45567899999999999999999999999999976 23345567899999999
Q ss_pred EEcCC---CCEEEEEeCCCeEEEEeCCC-CceeEEeecCCcCeeEEEEcCCC--CEEEEEeCCCeEEEEECCCCceeEEe
Q 005277 428 SFSPL---GDFILSSSADTTIRLWSTKL-NANLVCYKGHNYPVWDVQFNPQG--HYFASSSHDRTARIWSMDRIQPLRIM 501 (704)
Q Consensus 428 ~~sp~---~~~l~s~s~Dg~I~lwd~~~-~~~~~~~~~h~~~V~~v~~sp~~--~~l~sgs~dg~i~lwd~~~~~~~~~~ 501 (704)
.|+.. .++|++++.|..|+|+|+.. ...+.++.+|...|+++.|...| ..+++++.|+.|.+-........+.+
T Consensus 508 eyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f 587 (1080)
T KOG1408|consen 508 EYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLF 587 (1080)
T ss_pred eecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceec
Confidence 99863 46899999999999999864 35677889999999999999877 67999999988766544433333444
Q ss_pred ccCC-----CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeec---CCCCEEEEEEecCCCEEEEEeCCCeEEE
Q 005277 502 AGHL-----SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG---HRSMILSLAMSPDGRYMASGDEDGTIMM 573 (704)
Q Consensus 502 ~~~~-----~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~---h~~~i~~l~~spdg~~l~sg~~dg~I~i 573 (704)
..|. ..+..++..|+.+++++++.|+.|+|||+.+|+.++.|++ |.+....+...|.|.||++.+.|.++.+
T Consensus 588 ~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~ 667 (1080)
T KOG1408|consen 588 PRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCF 667 (1080)
T ss_pred cccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEE
Confidence 3332 4577899999999999999999999999999999999975 5677888999999999999999999999
Q ss_pred EeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCC
Q 005277 574 WDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVT 653 (704)
Q Consensus 574 wdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~ 653 (704)
+|..+|+++.++.||...|+.+.| .+|-+.|++.+.||.|.||.+.
T Consensus 668 ~Df~sgEcvA~m~GHsE~VTG~kF----------------------------------~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 668 VDFVSGECVAQMTGHSEAVTGVKF----------------------------------LNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred EEeccchhhhhhcCcchheeeeee----------------------------------cccchhheeecCCceEEEEECc
Confidence 999999999999999999999999 9999999999999999999987
Q ss_pred CC
Q 005277 654 TS 655 (704)
Q Consensus 654 ~~ 655 (704)
..
T Consensus 714 ~~ 715 (1080)
T KOG1408|consen 714 LT 715 (1080)
T ss_pred hh
Confidence 63
No 132
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=8.3e-21 Score=198.05 Aligned_cols=260 Identities=14% Similarity=0.150 Sum_probs=190.1
Q ss_pred CeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCC
Q 005277 330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLV-AGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (704)
Q Consensus 330 ~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~l-asg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (704)
..+.+|+...... ..++ .+...+.+++|+|+++.+ ++++.++.|++||+.+..
T Consensus 11 ~~v~~~d~~t~~~-~~~~-~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~------------------------ 64 (300)
T TIGR03866 11 NTISVIDTATLEV-TRTF-PVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGE------------------------ 64 (300)
T ss_pred CEEEEEECCCCce-EEEE-ECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCc------------------------
Confidence 3566665433322 2233 334557889999999876 667789999999986521
Q ss_pred CCccceeeccCCccCeEEEEEcCCCCEEEE-EeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCC-e
Q 005277 409 GRKRSYTLYQGHSGPVYSASFSPLGDFILS-SSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR-T 486 (704)
Q Consensus 409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s-~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg-~ 486 (704)
....+..+. .+..++|+|+++.+++ ++.|+.|++||+.+.+.+..+.. ...+.+++|+|+|.++++++.++ .
T Consensus 65 ----~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~ 138 (300)
T TIGR03866 65 ----VIGTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNM 138 (300)
T ss_pred ----EEEeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCe
Confidence 112222232 2467899999997765 45689999999998877776653 33568899999999999988765 5
Q ss_pred EEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCcEEEEeecCC-------CCEEEEEEecC
Q 005277 487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIGHR-------SMILSLAMSPD 558 (704)
Q Consensus 487 i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~h~-------~~i~~l~~spd 558 (704)
+.+||.++++....... .....+++|+|++.++++++ .++.|++||+.+++.+..+..+. .....++|+|+
T Consensus 139 ~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d 217 (300)
T TIGR03866 139 AHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKD 217 (300)
T ss_pred EEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCC
Confidence 67789988776654432 34567899999999886554 68999999999998877654321 12356889999
Q ss_pred CCEEEE-EeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCE
Q 005277 559 GRYMAS-GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSL 637 (704)
Q Consensus 559 g~~l~s-g~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 637 (704)
|+++++ .+.++.|.+||+.+++.+..+. +...+.++.| +|+|.+
T Consensus 218 g~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~----------------------------------~~~g~~ 262 (300)
T TIGR03866 218 GKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAF----------------------------------TPDEKY 262 (300)
T ss_pred CCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEE----------------------------------CCCCCE
Confidence 998655 4556789999999888776553 4456888888 999999
Q ss_pred EEEE-eCCCcEEEEeCCCCcc
Q 005277 638 LASG-SADCTVKLWDVTTSTK 657 (704)
Q Consensus 638 lasg-s~Dg~V~iWd~~~~~~ 657 (704)
|+++ +.+|.|++||+.++..
T Consensus 263 l~~~~~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 263 LLTTNGVSNDVSVIDVAALKV 283 (300)
T ss_pred EEEEcCCCCeEEEEECCCCcE
Confidence 9876 5689999999998764
No 133
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.90 E-value=3e-22 Score=197.72 Aligned_cols=219 Identities=28% Similarity=0.473 Sum_probs=172.9
Q ss_pred eeCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277 348 INTHNGLNCASISQD--GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (704)
Q Consensus 348 ~~~~~~V~~~~fs~d--g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (704)
..|.+.++.+.-++- ..+.|+=+..|.|.||++...-.... ...........+.+..+.+|.+.=+
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~------------~~~~~~~~s~~~Pl~t~~ghk~EGy 215 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALS------------EPGLEVKDSEFRPLFTFNGHKGEGY 215 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhc------------CccccccccccCceEEecccCccce
Confidence 456666666666654 45666667789999999875211110 0111112244667788899999999
Q ss_pred EEEEcCCCC-EEEEEeCCCeEEEEeCCCCcee---EEeecCCcCeeEEEEcC-CCCEEEEEeCCCeEEEEECCCCc--ee
Q 005277 426 SASFSPLGD-FILSSSADTTIRLWSTKLNANL---VCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQ--PL 498 (704)
Q Consensus 426 ~l~~sp~~~-~l~s~s~Dg~I~lwd~~~~~~~---~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~lwd~~~~~--~~ 498 (704)
+++|||-.. .|+||..-+.|++|...++.-. ..+.+|+..|-+++||| ....|++||.||+|+|||++.+. +.
T Consensus 216 ~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~ 295 (440)
T KOG0302|consen 216 GLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAA 295 (440)
T ss_pred eeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccce
Confidence 999999433 4788888889999998886543 34668999999999999 56789999999999999999872 33
Q ss_pred EEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC---CcEEEEeecCCCCEEEEEEecC-CCEEEEEeCCCeEEEE
Q 005277 499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS---GECVRIFIGHRSMILSLAMSPD-GRYMASGDEDGTIMMW 574 (704)
Q Consensus 499 ~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~---~~~~~~~~~h~~~i~~l~~spd-g~~l~sg~~dg~I~iw 574 (704)
.....|.++|+.|.|+.+-.+||+|+.||+++|||+|+ ++++..|+-|..+|+++.|+|. ...|++++.|.+|.||
T Consensus 296 ~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiW 375 (440)
T KOG0302|consen 296 VSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIW 375 (440)
T ss_pred eEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEE
Confidence 34478999999999999888999999999999999984 6788999999999999999994 5678889999999999
Q ss_pred eCCC
Q 005277 575 DLAS 578 (704)
Q Consensus 575 dl~~ 578 (704)
|+..
T Consensus 376 Dlsv 379 (440)
T KOG0302|consen 376 DLSV 379 (440)
T ss_pred Eeec
Confidence 9864
No 134
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.90 E-value=3.1e-22 Score=197.61 Aligned_cols=254 Identities=20% Similarity=0.371 Sum_probs=193.9
Q ss_pred eeeccCCccCeEEEEEcCCCC--EEEEEeCCCeEEEEeCCC----------------CceeEEeecCCcCeeEEEEcCC-
Q 005277 414 YTLYQGHSGPVYSASFSPLGD--FILSSSADTTIRLWSTKL----------------NANLVCYKGHNYPVWDVQFNPQ- 474 (704)
Q Consensus 414 ~~~~~~h~~~V~~l~~sp~~~--~l~s~s~Dg~I~lwd~~~----------------~~~~~~~~~h~~~V~~v~~sp~- 474 (704)
.....+|.+.++.+.-++-++ +.++-+..|.|.||++.. .+.+.++.+|...=..++|||-
T Consensus 144 ~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~ 223 (440)
T KOG0302|consen 144 EMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIK 223 (440)
T ss_pred cccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccc
Confidence 344567888888888877654 555668899999999752 3457788899999999999993
Q ss_pred CCEEEEEeCCCeEEEEECCCCcee---EEeccCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCC---cEEEEeecCC
Q 005277 475 GHYFASSSHDRTARIWSMDRIQPL---RIMAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSG---ECVRIFIGHR 547 (704)
Q Consensus 475 ~~~l~sgs~dg~i~lwd~~~~~~~---~~~~~~~~~V~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~---~~~~~~~~h~ 547 (704)
...+++|..-+.|++|...++.-. +.+.+|...|..++|+|. ...|++||.||+|+|||+|.+ .++.+ +.|.
T Consensus 224 ~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~ 302 (440)
T KOG0302|consen 224 TGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHN 302 (440)
T ss_pred ccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccC
Confidence 234888888899999998776432 446689999999999996 578899999999999999988 44544 7899
Q ss_pred CCEEEEEEecCCCEEEEEeCCCeEEEEeCCC---CeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeee
Q 005277 548 SMILSLAMSPDGRYMASGDEDGTIMMWDLAS---GRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLT 624 (704)
Q Consensus 548 ~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~---~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (704)
+.|+.|.|+.+-.+|++|+.||+++|||+++ ++++..+.-|..+|+++.|
T Consensus 303 sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW--------------------------- 355 (440)
T KOG0302|consen 303 SDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEW--------------------------- 355 (440)
T ss_pred CceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEe---------------------------
Confidence 9999999999888999999999999999985 5788999999999999999
Q ss_pred EEeecccCCC-CCEEEEEeCCCcEEEEeCCCCccccccccccC---ccccccccccCCCCcCeEEEEEccCC-cEEEEee
Q 005277 625 IIYFGCASCE-GSLLASGSADCTVKLWDVTTSTKVLKTEEKSG---TNRLRSLKTLPTKSTPVYSLQFSRRN-LLFAAGA 699 (704)
Q Consensus 625 ~~~~~~~s~~-g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~V~~l~fs~~g-~~La~gs 699 (704)
+|. ...|+++|.|..|.|||+.............. ..-+.++..+......|..|+|++.. -+|++.+
T Consensus 356 -------~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa 428 (440)
T KOG0302|consen 356 -------HPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTA 428 (440)
T ss_pred -------ccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEec
Confidence 554 56889999999999999976543221111100 00111222333345678899999875 3555555
Q ss_pred cCC
Q 005277 700 LSK 702 (704)
Q Consensus 700 ~dg 702 (704)
.||
T Consensus 429 ~dG 431 (440)
T KOG0302|consen 429 IDG 431 (440)
T ss_pred ccc
Confidence 554
No 135
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=1.2e-20 Score=196.74 Aligned_cols=256 Identities=13% Similarity=0.107 Sum_probs=189.3
Q ss_pred CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEE-EEEeC
Q 005277 363 GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFI-LSSSA 441 (704)
Q Consensus 363 g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l-~s~s~ 441 (704)
++++++++.|+.|.+||+.+. .....+.+|. .+.+++|+|+++.+ ++++.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~----------------------------~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~ 51 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATL----------------------------EVTRTFPVGQ-RPRGITLSKDGKLLYVCASD 51 (300)
T ss_pred CcEEEEecCCCEEEEEECCCC----------------------------ceEEEEECCC-CCCceEECCCCCEEEEEECC
Confidence 357889999999999998652 1223334443 36789999999976 56778
Q ss_pred CCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEE-eCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEE
Q 005277 442 DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS-SHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI 520 (704)
Q Consensus 442 Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sg-s~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l 520 (704)
++.|++||..+++....+..+.. +..++|+|+++.++++ +.++.+++||+++.+.+..+.. ...+.+++|+|++.++
T Consensus 52 ~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l 129 (300)
T TIGR03866 52 SDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIV 129 (300)
T ss_pred CCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEE
Confidence 89999999998888776765543 5678999999877654 5689999999998877776653 3456889999999999
Q ss_pred EEEECCC-cEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEE-eCCCeEEEEeCCCCeeeeeecCCCc-----e--
Q 005277 521 ATGSSDK-TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG-DEDGTIMMWDLASGRCVTPLMGHTS-----C-- 591 (704)
Q Consensus 521 ~tgs~dg-~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg-~~dg~I~iwdl~~~~~~~~~~~h~~-----~-- 591 (704)
++++.++ .+.+||..+++....... ...+.+++|+|+|++|+++ ..+|.|.+||+.+++.+..+..+.. .
T Consensus 130 ~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~ 208 (300)
T TIGR03866 130 VNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQ 208 (300)
T ss_pred EEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCC
Confidence 9988765 467789988877665432 3456789999999988654 4689999999999887766543211 1
Q ss_pred eeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEE-EeCCCcEEEEeCCCCccccccccccCcccc
Q 005277 592 VWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLAS-GSADCTVKLWDVTTSTKVLKTEEKSGTNRL 670 (704)
Q Consensus 592 V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~las-gs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~ 670 (704)
...+.| +++++++++ .+.++.|.+||+.+++..
T Consensus 209 ~~~i~~----------------------------------s~dg~~~~~~~~~~~~i~v~d~~~~~~~------------ 242 (300)
T TIGR03866 209 PVGIKL----------------------------------TKDGKTAFVALGPANRVAVVDAKTYEVL------------ 242 (300)
T ss_pred ccceEE----------------------------------CCCCCEEEEEcCCCCeEEEEECCCCcEE------------
Confidence 123334 899988644 455778999999875432
Q ss_pred ccccccCCCCcCeEEEEEccCCcEEEEeec
Q 005277 671 RSLKTLPTKSTPVYSLQFSRRNLLFAAGAL 700 (704)
Q Consensus 671 ~~l~~~~~~~~~V~~l~fs~~g~~La~gs~ 700 (704)
..+ .+...+.+++|+|+|.+|++++.
T Consensus 243 ---~~~-~~~~~~~~~~~~~~g~~l~~~~~ 268 (300)
T TIGR03866 243 ---DYL-LVGQRVWQLAFTPDEKYLLTTNG 268 (300)
T ss_pred ---EEE-EeCCCcceEEECCCCCEEEEEcC
Confidence 111 12346889999999999988643
No 136
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=5.4e-23 Score=201.96 Aligned_cols=237 Identities=20% Similarity=0.303 Sum_probs=202.9
Q ss_pred cceeeccCCccCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEE
Q 005277 412 RSYTLYQGHSGPVYSASFSPLG-DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIW 490 (704)
Q Consensus 412 ~~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lw 490 (704)
..+..+.||...|+|++=+|.. ..++||+.||.|+|||+....+...+..|.+.|.+|++.. ..+++++.|++|+.|
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~w 134 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQW 134 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeee
Confidence 3455678999999999999987 6789999999999999999999999999999999999985 679999999999999
Q ss_pred ECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCC-CEEEEEeCCC
Q 005277 491 SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG-RYMASGDEDG 569 (704)
Q Consensus 491 d~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg-~~l~sg~~dg 569 (704)
.++.. +++++.+ .+.+..+.-+..++.++|++. .|.|||.....++..+.-....|.++.|+|.. ..|++++.|+
T Consensus 135 k~~~~-p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDr 210 (433)
T KOG0268|consen 135 KIDGP-PLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDR 210 (433)
T ss_pred eccCC-cceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCC
Confidence 98774 6666654 456777777777788888875 49999999999999998888899999999964 5677888999
Q ss_pred eEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEE
Q 005277 570 TIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKL 649 (704)
Q Consensus 570 ~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~i 649 (704)
.|.+||++++.++..+. -...-..++| +|.+-.+++|++|..++.
T Consensus 211 sIvLyD~R~~~Pl~KVi-~~mRTN~Isw----------------------------------nPeafnF~~a~ED~nlY~ 255 (433)
T KOG0268|consen 211 SIVLYDLRQASPLKKVI-LTMRTNTICW----------------------------------NPEAFNFVAANEDHNLYT 255 (433)
T ss_pred ceEEEecccCCccceee-eeccccceec----------------------------------Cccccceeecccccccee
Confidence 99999999998876653 1223356677 998888999999999999
Q ss_pred EeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 650 WDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 650 Wd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
+|+..-. .++..+.+|.+.|.+|.|||.|+-+++||+|.|
T Consensus 256 ~DmR~l~--------------~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDks 295 (433)
T KOG0268|consen 256 YDMRNLS--------------RPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKS 295 (433)
T ss_pred hhhhhhc--------------ccchhhcccceeEEEeccCCCcchhccccccce
Confidence 9998754 347788899999999999999999999999986
No 137
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=5e-21 Score=184.62 Aligned_cols=255 Identities=17% Similarity=0.315 Sum_probs=196.3
Q ss_pred cCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC----CceeEEeecCCcCeeEEEEcC--CCCEEEEEeCCCeEEEEE
Q 005277 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKL----NANLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRTARIWS 491 (704)
Q Consensus 418 ~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~----~~~~~~~~~h~~~V~~v~~sp--~~~~l~sgs~dg~i~lwd 491 (704)
.+|..-|.++.|.+.|+.+++|+.|++|+|||... ..+....+.|.+.|+.|.|.+ -|+.+|+++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 47889999999999999999999999999999643 345667889999999999977 699999999999999997
Q ss_pred CCC---------CceeEEeccCCCCeeEEEEcCC--CCEEEEEECCCcEEEEeCCCCcEE------EEee-------cCC
Q 005277 492 MDR---------IQPLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSGECV------RIFI-------GHR 547 (704)
Q Consensus 492 ~~~---------~~~~~~~~~~~~~V~~v~~~p~--~~~l~tgs~dg~I~iwd~~~~~~~------~~~~-------~h~ 547 (704)
-.. .....++....+.|+.|+|.|. |-.||+++.||.+|||+...--.+ ..+. .+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 521 1233455667789999999985 788999999999999987543222 2222 355
Q ss_pred CCEEEEEEecC---CCEEEEEeCC-----CeEEEEeCCCC----eeeeeecCCCceeeeeeeeeeehccccccccccccc
Q 005277 548 SMILSLAMSPD---GRYMASGDED-----GTIMMWDLASG----RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVS 615 (704)
Q Consensus 548 ~~i~~l~~spd---g~~l~sg~~d-----g~I~iwdl~~~----~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~ 615 (704)
.+..|+.|+|. ..+|++|+.+ +.+.||....+ ..+.++.+|..+|++++|.+..
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~-------------- 235 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNI-------------- 235 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecccc--------------
Confidence 67889999983 4678888766 57889976543 4567788999999999993210
Q ss_pred cceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccccccc-----ccCccccccccccCCCCcCeEEEEEcc
Q 005277 616 TGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEE-----KSGTNRLRSLKTLPTKSTPVYSLQFSR 690 (704)
Q Consensus 616 ~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~V~~l~fs~ 690 (704)
...-.+||+++.|| |+||.+..........+ ....-....+..+..|++.|..+.|+-
T Consensus 236 ----------------Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNm 298 (361)
T KOG2445|consen 236 ----------------GRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNM 298 (361)
T ss_pred ----------------CCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEee
Confidence 11235899999999 99999985332211111 111223356778899999999999999
Q ss_pred CCcEEEEeecCCC
Q 005277 691 RNLLFAAGALSKT 703 (704)
Q Consensus 691 ~g~~La~gs~dgt 703 (704)
.|.+|++.+.||+
T Consensus 299 tGtiLsStGdDG~ 311 (361)
T KOG2445|consen 299 TGTILSSTGDDGC 311 (361)
T ss_pred eeeEEeecCCCce
Confidence 9999999999996
No 138
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.88 E-value=3e-20 Score=189.59 Aligned_cols=339 Identities=19% Similarity=0.214 Sum_probs=235.1
Q ss_pred hccCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCC------CCC
Q 005277 327 DLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGEND------TTP 400 (704)
Q Consensus 327 ~~~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~------~~~ 400 (704)
+....+.+|+...-.+.... +.|.++|.|+..-.+|.+|- |+.|..|..||-+- ....... .+.... ...
T Consensus 264 DS~G~i~Iw~~~~~~~~k~~-~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y-~k~r~~e-lPe~~G~iRtv~e~~ 339 (626)
T KOG2106|consen 264 DSGGNILIWSKGTNRISKQV-HAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNY-RKLRETE-LPEQFGPIRTVAEGK 339 (626)
T ss_pred cCCceEEEEeCCCceEEeEe-eecCCceEEEEEecCccEee-cCccceEEeccccc-ccccccc-CchhcCCeeEEecCC
Confidence 44556677776554444444 48999999999999998776 99999999999321 1111000 000000 000
Q ss_pred cccccCC--------CCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEc
Q 005277 401 REDIIGP--------NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN 472 (704)
Q Consensus 401 ~~~~~~~--------~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~s 472 (704)
.....+. .-.........+|......++.+|+.+.+++++.|+.+++|+ ..+...+.. ...++.++.|+
T Consensus 340 ~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fh 416 (626)
T KOG2106|consen 340 GDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFH 416 (626)
T ss_pred CcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeecc
Confidence 0011111 111223344568999999999999999999999999999999 344444333 46789999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC-CcEEEE-eecCCCCE
Q 005277 473 PQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-GECVRI-FIGHRSMI 550 (704)
Q Consensus 473 p~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~-~~~~~~-~~~h~~~i 550 (704)
|.| .+|.|+..|...+.|.++...+..... ..++++++|+|+|.+||.|+.|+.|++|-+.. |..... -..+..+|
T Consensus 417 psg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~i 494 (626)
T KOG2106|consen 417 PSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPI 494 (626)
T ss_pred Ccc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCcee
Confidence 999 999999999999999999776666665 89999999999999999999999999998864 333322 23344899
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecc
Q 005277 551 LSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGC 630 (704)
Q Consensus 551 ~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (704)
+.+.||+|+++|.+-+.|-.|..|.....+.+.. +..+.|....+.-+ +.. +.......+..++
T Consensus 495 thLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts-------~kDvkW~t~~c~lG-F~v--------~g~s~~t~i~a~~ 558 (626)
T KOG2106|consen 495 THLDWSSDSQFLVSNSGDYEILYWKPSECKQITS-------VKDVKWATYTCTLG-FEV--------FGGSDGTDINAVA 558 (626)
T ss_pred EEeeecCCCceEEeccCceEEEEEccccCcccce-------ecceeeeeeEEEEE-EEE--------ecccCCchHHHhh
Confidence 9999999999999999999999995443333322 55555521110000 000 0011122334445
Q ss_pred cCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277 631 ASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 702 (704)
Q Consensus 631 ~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg 702 (704)
-+...+++|+|...|.|++|...-.+.. .....+.+|.+-|.+|+|......|.+.+.|.
T Consensus 559 rs~~~~~lA~gdd~g~v~lf~yPc~s~r------------A~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~ 618 (626)
T KOG2106|consen 559 RSHCEKLLASGDDFGKVHLFSYPCSSPR------------APSHEYGGHSSHVTNVAFLCKDSHLISTGKDT 618 (626)
T ss_pred hhhhhhhhhccccCceEEEEccccCCCc------------ccceeeccccceeEEEEEeeCCceEEecCCCc
Confidence 5788999999999999999987654321 23456778999999999998777776666554
No 139
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.88 E-value=2.7e-20 Score=200.32 Aligned_cols=314 Identities=18% Similarity=0.286 Sum_probs=243.5
Q ss_pred hccCeEeecCCCCCCeE---EEEEeeC-CCCEEEEEEcCC--CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCC
Q 005277 327 DLRNRVHLSSAALPSVS---FYTFINT-HNGLNCASISQD--GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTP 400 (704)
Q Consensus 327 ~~~~~~~l~~~~~p~~~---~~~~~~~-~~~V~~~~fs~d--g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~ 400 (704)
+....+++|....+... ..++..- .+.|+++. +|. -+.++.|+..|.++||++.+
T Consensus 131 d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt------------------ 191 (910)
T KOG1539|consen 131 DISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRT------------------ 191 (910)
T ss_pred EccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEecc------------------
Confidence 34456677766554221 1233332 33377664 554 56789999999999999987
Q ss_pred cccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCE-EE
Q 005277 401 REDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY-FA 479 (704)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~-l~ 479 (704)
.+.+..+.++...|+++.=+|-=..++.|..+|+|.++++..++.+.+++...++|++++|..||+. ++
T Consensus 192 ----------~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~la 261 (910)
T KOG1539|consen 192 ----------GKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLA 261 (910)
T ss_pred ----------CcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEE
Confidence 5677888899999999999999999999999999999999999999999955699999999999876 56
Q ss_pred EEeCCCeEEEEECCCCceeEEec-cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCc-----------------EEE
Q 005277 480 SSSHDRTARIWSMDRIQPLRIMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE-----------------CVR 541 (704)
Q Consensus 480 sgs~dg~i~lwd~~~~~~~~~~~-~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~-----------------~~~ 541 (704)
+|+..|.+.+||++..+.+.... .|.+.|....|.|....+++++.|..+++|=..++. +++
T Consensus 262 s~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~ir 341 (910)
T KOG1539|consen 262 SGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIR 341 (910)
T ss_pred eccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchhee
Confidence 77777999999999887776655 788888888888888888888888887777332110 000
Q ss_pred E-------------------------------------------------------------------------------
Q 005277 542 I------------------------------------------------------------------------------- 542 (704)
Q Consensus 542 ~------------------------------------------------------------------------------- 542 (704)
.
T Consensus 342 fy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~ 421 (910)
T KOG1539|consen 342 FYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGK 421 (910)
T ss_pred eeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCc
Confidence 0
Q ss_pred ----------------eecCC------CCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeee---cCCCceeeeeee
Q 005277 543 ----------------FIGHR------SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL---MGHTSCVWTLAY 597 (704)
Q Consensus 543 ----------------~~~h~------~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~---~~h~~~V~sl~~ 597 (704)
.-.+. ..+++++.+++|++.+.|...|.|-+|++.+|-....+ ..|.++|+.++.
T Consensus 422 ~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~ 501 (910)
T KOG1539|consen 422 RSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAV 501 (910)
T ss_pred ceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEe
Confidence 00122 46889999999999999999999999999999888888 589999999988
Q ss_pred eeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccccccccc------------
Q 005277 598 RFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKS------------ 665 (704)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~------------ 665 (704)
..-++.+++++.+|.+++||+..........-..
T Consensus 502 ----------------------------------D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~ 547 (910)
T KOG1539|consen 502 ----------------------------------DGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSD 547 (910)
T ss_pred ----------------------------------cCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhh
Confidence 6677889999999999999998876332221100
Q ss_pred --------------CccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 666 --------------GTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 666 --------------~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
...+.+.+..+.+|...|+++.|||||++|++++.|++
T Consensus 548 l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~t 599 (910)
T KOG1539|consen 548 LLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDST 599 (910)
T ss_pred hhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCc
Confidence 01112345668899999999999999999999999986
No 140
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=3.7e-21 Score=184.13 Aligned_cols=207 Identities=28% Similarity=0.498 Sum_probs=173.0
Q ss_pred cCCccCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCce----------eE-----EeecCCcCeeEEEEcC-CCCEEEE
Q 005277 418 QGHSGPVYSASFSP-LGDFILSSSADTTIRLWSTKLNAN----------LV-----CYKGHNYPVWDVQFNP-QGHYFAS 480 (704)
Q Consensus 418 ~~h~~~V~~l~~sp-~~~~l~s~s~Dg~I~lwd~~~~~~----------~~-----~~~~h~~~V~~v~~sp-~~~~l~s 480 (704)
..|.+.|+++...+ .|+++++|+.||.|.+||++.... +. .-.+|...|.++.|-| |..+|.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 45889999999987 578999999999999999975431 11 1136889999999999 6678999
Q ss_pred EeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcC---CCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEec
Q 005277 481 SSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHI---NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP 557 (704)
Q Consensus 481 gs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p---~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~sp 557 (704)
++.|.++++||.++.+....|. ..+.|.+-+|+| ...++|+|..+-.|++.|+.+|.+.+.+.||.+.|.++.|+|
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp 198 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSP 198 (397)
T ss_pred ccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEecc
Confidence 9999999999999988877776 457788888887 356889999999999999999999999999999999999999
Q ss_pred CCCE-EEEEeCCCeEEEEeCCCC-eeeeee--------------cCCCceeeeeeeeeeehccccccccccccccceeee
Q 005277 558 DGRY-MASGDEDGTIMMWDLASG-RCVTPL--------------MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFY 621 (704)
Q Consensus 558 dg~~-l~sg~~dg~I~iwdl~~~-~~~~~~--------------~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (704)
...+ |++|+.||.|++||++.. .+...+ .+|.+.|..++|
T Consensus 199 ~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~------------------------ 254 (397)
T KOG4283|consen 199 SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAW------------------------ 254 (397)
T ss_pred CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeee------------------------
Confidence 7765 678999999999999854 333333 345666777777
Q ss_pred eeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccc
Q 005277 622 SLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVL 659 (704)
Q Consensus 622 ~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~ 659 (704)
+.++.++++++.|..+++|+..++....
T Consensus 255 ----------tSd~~~l~~~gtd~r~r~wn~~~G~ntl 282 (397)
T KOG4283|consen 255 ----------TSDARYLASCGTDDRIRVWNMESGRNTL 282 (397)
T ss_pred ----------cccchhhhhccCccceEEeecccCcccc
Confidence 9999999999999999999999887543
No 141
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.88 E-value=3.6e-21 Score=201.52 Aligned_cols=272 Identities=18% Similarity=0.279 Sum_probs=201.2
Q ss_pred CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeC
Q 005277 362 DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSA 441 (704)
Q Consensus 362 dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~ 441 (704)
...+||.+..||.|.++|.....-. ........+..|.+.|..+.|.|....|++++.
T Consensus 63 ~eHiLavadE~G~i~l~dt~~~~fr----------------------~ee~~lk~~~aH~nAifDl~wapge~~lVsasG 120 (720)
T KOG0321|consen 63 KEHILAVADEDGGIILFDTKSIVFR----------------------LEERQLKKPLAHKNAIFDLKWAPGESLLVSASG 120 (720)
T ss_pred ccceEEEecCCCceeeecchhhhcc----------------------hhhhhhcccccccceeEeeccCCCceeEEEccC
Confidence 3678999999999999998752211 113345667789999999999996668899999
Q ss_pred CCeEEEEeCCCCceeEE--eecCCcCeeEEEEcC-CCCEEEEEeCCCeEEEEECCCCc--------------------e-
Q 005277 442 DTTIRLWSTKLNANLVC--YKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQ--------------------P- 497 (704)
Q Consensus 442 Dg~I~lwd~~~~~~~~~--~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~lwd~~~~~--------------------~- 497 (704)
|.++++||+.+...+.. +.+|.+.|.+++|.| +...|++|+.||.+.|||++... +
T Consensus 121 DsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptps 200 (720)
T KOG0321|consen 121 DSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPS 200 (720)
T ss_pred CceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCC
Confidence 99999999999888766 899999999999999 55679999999999999986321 1
Q ss_pred ------eEEeccCCCCeeE---EEEcCCCCEEEEEEC-CCcEEEEeCCCCcEEEE--------eecC---CCCEEEEEEe
Q 005277 498 ------LRIMAGHLSDVDC---VRWHINCNYIATGSS-DKTVRLWDVSSGECVRI--------FIGH---RSMILSLAMS 556 (704)
Q Consensus 498 ------~~~~~~~~~~V~~---v~~~p~~~~l~tgs~-dg~I~iwd~~~~~~~~~--------~~~h---~~~i~~l~~s 556 (704)
++....+...|.+ +.+..|...||+++. |+.|++||++....... +..| ...+.++...
T Consensus 201 kp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lD 280 (720)
T KOG0321|consen 201 KPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILD 280 (720)
T ss_pred chhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEec
Confidence 1111223334444 444577888888777 99999999987543321 2223 3357788888
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCe--eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCC
Q 005277 557 PDGRYMASGDEDGTIMMWDLASGR--CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCE 634 (704)
Q Consensus 557 pdg~~l~sg~~dg~I~iwdl~~~~--~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 634 (704)
..|.+|.+.+.|+.|++|++.+.. ++..+.++...-..+. .+.+|+
T Consensus 281 ssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vk--------------------------------s~lSpd 328 (720)
T KOG0321|consen 281 SSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVK--------------------------------SELSPD 328 (720)
T ss_pred CCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeee--------------------------------eecCCC
Confidence 889999999999999999997642 3344444332111111 123999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccC--CcEEEEeecCC
Q 005277 635 GSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRR--NLLFAAGALSK 702 (704)
Q Consensus 635 g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~--g~~La~gs~dg 702 (704)
+.++++|+.|...++|.+.+... ....+.+|...|++|+|.|. ..++++ +.|.
T Consensus 329 ~~~l~SgSsd~~ayiw~vs~~e~--------------~~~~l~Ght~eVt~V~w~pS~~t~v~Tc-SdD~ 383 (720)
T KOG0321|consen 329 DCSLLSGSSDEQAYIWVVSSPEA--------------PPALLLGHTREVTTVRWLPSATTPVATC-SDDF 383 (720)
T ss_pred CceEeccCCCcceeeeeecCccC--------------ChhhhhCcceEEEEEeeccccCCCceee-ccCc
Confidence 99999999999999999998764 35567788999999999764 455544 6553
No 142
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=1.1e-20 Score=182.77 Aligned_cols=232 Identities=19% Similarity=0.260 Sum_probs=191.6
Q ss_pred EEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCe
Q 005277 345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (704)
Q Consensus 345 ~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 424 (704)
.....|..++.+++|.++ ..+++|+.||.|+.+|+.+. ....+..|..+|
T Consensus 48 ~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~-----------------------------~~~~igth~~~i 97 (323)
T KOG1036|consen 48 KLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTG-----------------------------NEDQIGTHDEGI 97 (323)
T ss_pred hhheecCCceeeeeccCC-ceEEEeccCceEEEEEecCC-----------------------------cceeeccCCCce
Confidence 345678999999999875 56889999999999999862 234456799999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe--c
Q 005277 425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM--A 502 (704)
Q Consensus 425 ~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~--~ 502 (704)
.|+.+++....+++||+|++|++||.+.......+. ....|.++..+ |+.|++|+.|..+.+||+++....... .
T Consensus 98 ~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS 174 (323)
T KOG1036|consen 98 RCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRES 174 (323)
T ss_pred EEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccc
Confidence 999999988899999999999999999755555554 34478888775 788999999999999999875533221 2
Q ss_pred cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC----cEEEEeecCCC---------CEEEEEEecCCCEEEEEeCCC
Q 005277 503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG----ECVRIFIGHRS---------MILSLAMSPDGRYMASGDEDG 569 (704)
Q Consensus 503 ~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~----~~~~~~~~h~~---------~i~~l~~spdg~~l~sg~~dg 569 (704)
.-.-.+.||++-|++.=.++++-||.|.+=.+... +....|+.|.. +|++|+|+|-...|+||+.||
T Consensus 175 ~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG 254 (323)
T KOG1036|consen 175 SLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDG 254 (323)
T ss_pred cceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCc
Confidence 34457899999999888999999999998777654 33345555542 799999999999999999999
Q ss_pred eEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeC
Q 005277 570 TIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSA 643 (704)
Q Consensus 570 ~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~ 643 (704)
.|.+||+.+.+.+..+......|.+++| +.+|..||+++.
T Consensus 255 ~V~~Wd~~~rKrl~q~~~~~~SI~slsf----------------------------------s~dG~~LAia~s 294 (323)
T KOG1036|consen 255 IVNIWDLFNRKRLKQLAKYETSISSLSF----------------------------------SMDGSLLAIASS 294 (323)
T ss_pred eEEEccCcchhhhhhccCCCCceEEEEe----------------------------------ccCCCeEEEEec
Confidence 9999999999999999888888999999 999999999874
No 143
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.88 E-value=6.6e-20 Score=187.10 Aligned_cols=273 Identities=18% Similarity=0.269 Sum_probs=214.2
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccC-CccCeEEEE
Q 005277 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG-HSGPVYSAS 428 (704)
Q Consensus 350 ~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~ 428 (704)
.++.|..+.|+|...-|...+..|.+..|++.+...... .-.+.. ...-|.|++
T Consensus 199 sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~-------------------------~~~fek~ekk~Vl~v~ 253 (626)
T KOG2106|consen 199 SNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKR-------------------------QGIFEKREKKFVLCVT 253 (626)
T ss_pred ccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEE-------------------------eeccccccceEEEEEE
Confidence 456788999999776666666789999998876332211 111111 225799999
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCC-----------ce
Q 005277 429 FSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-----------QP 497 (704)
Q Consensus 429 ~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~-----------~~ 497 (704)
|.++|+ +++|..+|.|.||+..+.+..+....|.+.|.+++...+|.++ +|+.|+.|..||-+-. .+
T Consensus 254 F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~ 331 (626)
T KOG2106|consen 254 FLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGP 331 (626)
T ss_pred EcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEe-ecCccceEEeccccccccccccCchhcCC
Confidence 999987 7899999999999999888877777999999999999999755 5999999999984310 01
Q ss_pred e-----------------------------EEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCC
Q 005277 498 L-----------------------------RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS 548 (704)
Q Consensus 498 ~-----------------------------~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~ 548 (704)
+ ....+|......++.||+.+.++|++.|+.+++|+ ..++.... .-..
T Consensus 332 iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~-~~~d 408 (626)
T KOG2106|consen 332 IRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTK-IIED 408 (626)
T ss_pred eeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEE-EecC
Confidence 1 11246777888899999999999999999999999 44544433 3457
Q ss_pred CEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEee
Q 005277 549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYF 628 (704)
Q Consensus 549 ~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (704)
++.|+.|+|.| .++.|...|...+.|..+...+..-.. ..++..+.|
T Consensus 409 ~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~y------------------------------- 455 (626)
T KOG2106|consen 409 PAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRY------------------------------- 455 (626)
T ss_pred ceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEE-------------------------------
Confidence 88999999999 999999999999999998666655444 889999999
Q ss_pred cccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecC
Q 005277 629 GCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS 701 (704)
Q Consensus 629 ~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~d 701 (704)
+|+|.+||.|+.|+.|+||.+..+..... .+... +.++|+.+.||+|+++|.+-+-|
T Consensus 456 ---sp~G~~lAvgs~d~~iyiy~Vs~~g~~y~-----------r~~k~--~gs~ithLDwS~Ds~~~~~~S~d 512 (626)
T KOG2106|consen 456 ---SPDGAFLAVGSHDNHIYIYRVSANGRKYS-----------RVGKC--SGSPITHLDWSSDSQFLVSNSGD 512 (626)
T ss_pred ---cCCCCEEEEecCCCeEEEEEECCCCcEEE-----------Eeeee--cCceeEEeeecCCCceEEeccCc
Confidence 99999999999999999999987654321 12222 23899999999999999876543
No 144
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.3e-20 Score=205.09 Aligned_cols=236 Identities=24% Similarity=0.333 Sum_probs=201.4
Q ss_pred cCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-ceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 005277 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN-ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ 496 (704)
Q Consensus 418 ~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~-~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~ 496 (704)
.+|....+.|+|.|+|.+|++|+.||.|++|+.... ..-..+..+...|.+++. .+.+|++|+.+++|.+|.+..+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCC
Confidence 479999999999999999999999999999998766 333444447777877776 46699999999999999999988
Q ss_pred eeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 005277 497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576 (704)
Q Consensus 497 ~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl 576 (704)
.-..+....-++++++|+.+|+++|.|+.|-.|++.++.+......+.+|.++|.++.|+|.+++||+.+.||.|+|||+
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~ 167 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDL 167 (933)
T ss_pred ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEc
Confidence 87777777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeeeeecCC--------CceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEE
Q 005277 577 ASGRCVTPLMGH--------TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVK 648 (704)
Q Consensus 577 ~~~~~~~~~~~h--------~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~ 648 (704)
.++.+..++.+- ...+..++| +|+|..++..+.|+.|+
T Consensus 168 ~~~~~~~tl~~v~k~n~~~~s~i~~~~aW----------------------------------~Pk~g~la~~~~d~~Vk 213 (933)
T KOG1274|consen 168 QDGILSKTLTGVDKDNEFILSRICTRLAW----------------------------------HPKGGTLAVPPVDNTVK 213 (933)
T ss_pred ccchhhhhcccCCccccccccceeeeeee----------------------------------cCCCCeEEeeccCCeEE
Confidence 998877766432 234556667 99999999999999999
Q ss_pred EEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277 649 LWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 702 (704)
Q Consensus 649 iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg 702 (704)
+|+.......... ....+.+.+..++|+|.|.|||+++.+|
T Consensus 214 vy~r~~we~~f~L-------------r~~~~ss~~~~~~wsPnG~YiAAs~~~g 254 (933)
T KOG1274|consen 214 VYSRKGWELQFKL-------------RDKLSSSKFSDLQWSPNGKYIAASTLDG 254 (933)
T ss_pred EEccCCceeheee-------------cccccccceEEEEEcCCCcEEeeeccCC
Confidence 9999887653222 1122334499999999999999999887
No 145
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.87 E-value=5.7e-21 Score=194.22 Aligned_cols=290 Identities=17% Similarity=0.209 Sum_probs=221.6
Q ss_pred ccCeEeecCCCC-CCeEEEEEeeCCCCEEEEEEcCCCCE-EEEEeCCCcEEEEEcccCCccccccccCCCCCCCCccccc
Q 005277 328 LRNRVHLSSAAL-PSVSFYTFINTHNGLNCASISQDGSL-VAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII 405 (704)
Q Consensus 328 ~~~~~~l~~~~~-p~~~~~~~~~~~~~V~~~~fs~dg~~-lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (704)
..+.+++|+.+. .....|......-++.++.|+....+ +|+.+.|..|++|.-.+..
T Consensus 10 ~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~--------------------- 68 (673)
T KOG4378|consen 10 TGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKT--------------------- 68 (673)
T ss_pred cCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCC---------------------
Confidence 345677776633 33334444455567999999887642 2333457889999755410
Q ss_pred CCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCC
Q 005277 406 GPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR 485 (704)
Q Consensus 406 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg 485 (704)
+.........|. .-.|++......|+++|+..++|+|||++...+.+.+++|...|+++.++....|+|+++..|
T Consensus 69 ---~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gG 143 (673)
T KOG4378|consen 69 ---PEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGG 143 (673)
T ss_pred ---Cccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCC
Confidence 001122222232 223444444458999999999999999997777888899999999999999999999999999
Q ss_pred eEEEEECCCCceeEEeccC-CCCeeEEEEcCCCCE-EEEEECCCcEEEEeCCCCcEEEEe-ecCCCCEEEEEEecC-CCE
Q 005277 486 TARIWSMDRIQPLRIMAGH-LSDVDCVRWHINCNY-IATGSSDKTVRLWDVSSGECVRIF-IGHRSMILSLAMSPD-GRY 561 (704)
Q Consensus 486 ~i~lwd~~~~~~~~~~~~~-~~~V~~v~~~p~~~~-l~tgs~dg~I~iwd~~~~~~~~~~-~~h~~~i~~l~~spd-g~~ 561 (704)
.|.|..+.++.....|... ...|.-+.|||..+. |.+++.+|.|.+||+....++..+ ..|..+...|+|+|. ..+
T Consensus 144 diiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l 223 (673)
T KOG4378|consen 144 DIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEAL 223 (673)
T ss_pred cEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccce
Confidence 9999999988777777644 345668999997655 456889999999999877766544 579999999999994 567
Q ss_pred EEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEE
Q 005277 562 MASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASG 641 (704)
Q Consensus 562 l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasg 641 (704)
|++.|.|..|.+||.+..+....+. ...+...++| +++|.+|+.|
T Consensus 224 ~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf----------------------------------~~~G~~L~aG 268 (673)
T KOG4378|consen 224 LVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAF----------------------------------SECGTYLCAG 268 (673)
T ss_pred EEEecccceEEEeecccccccceee-ecCCcceeee----------------------------------cCCceEEEee
Confidence 8899999999999998776655553 4567788888 9999999999
Q ss_pred eCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCC
Q 005277 642 SADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRN 692 (704)
Q Consensus 642 s~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g 692 (704)
+..|.|..||+...+ .++..+..|...|++|+|-+.-
T Consensus 269 ~s~G~~i~YD~R~~k--------------~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 269 NSKGELIAYDMRSTK--------------APVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred cCCceEEEEecccCC--------------CCceEeeecccceeEEEeeecc
Confidence 999999999998865 3477788899999999998765
No 146
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=1.8e-20 Score=180.38 Aligned_cols=237 Identities=19% Similarity=0.242 Sum_probs=188.8
Q ss_pred cCeEeecCCCC-CCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCC
Q 005277 329 RNRVHLSSAAL-PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP 407 (704)
Q Consensus 329 ~~~~~l~~~~~-p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (704)
...+++|...- .........+|.++|.|++|+.||..+++|+.|+.+++||+.+.
T Consensus 49 D~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~------------------------ 104 (347)
T KOG0647|consen 49 DGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG------------------------ 104 (347)
T ss_pred CCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC------------------------
Confidence 34556654322 11111346789999999999999999999999999999999862
Q ss_pred CCCccceeeccCCccCeEEEEEcCCCC--EEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCC
Q 005277 408 NGRKRSYTLYQGHSGPVYSASFSPLGD--FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR 485 (704)
Q Consensus 408 ~~~~~~~~~~~~h~~~V~~l~~sp~~~--~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg 485 (704)
.......|.++|.++.|-+... .|++||.|++|+.||++....+.++.- ...|.++.. ...+++++..++
T Consensus 105 -----Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv--~~pm~vVata~r 176 (347)
T KOG0647|consen 105 -----QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADV--LYPMAVVATAER 176 (347)
T ss_pred -----CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-cceeeehhc--cCceeEEEecCC
Confidence 3345567999999999988766 799999999999999998888887763 445666655 356788899999
Q ss_pred eEEEEECCCCcee--EEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC--cEEEEeecCCC---------CEEE
Q 005277 486 TARIWSMDRIQPL--RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG--ECVRIFIGHRS---------MILS 552 (704)
Q Consensus 486 ~i~lwd~~~~~~~--~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~--~~~~~~~~h~~---------~i~~ 552 (704)
.|.+|+++++... +....-.-.+.||+..++..-.+.|+-.|.+.+..+..+ +.-..|+.|.. .|.+
T Consensus 177 ~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNs 256 (347)
T KOG0647|consen 177 HIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNS 256 (347)
T ss_pred cEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecc
Confidence 9999999765322 112223456899999999888899999999999998876 33344555552 5788
Q ss_pred EEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeee
Q 005277 553 LAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY 597 (704)
Q Consensus 553 l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~ 597 (704)
|+|+|.-..|+++|.||++.+||-.....+.....|..+|++..|
T Consensus 257 i~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~f 301 (347)
T KOG0647|consen 257 IAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSF 301 (347)
T ss_pred eEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEe
Confidence 999999999999999999999999888889999999999999999
No 147
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.87 E-value=2.1e-20 Score=186.68 Aligned_cols=303 Identities=16% Similarity=0.268 Sum_probs=216.9
Q ss_pred CCCCEEEEEEcCCCC-EEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEE
Q 005277 350 THNGLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS 428 (704)
Q Consensus 350 ~~~~V~~~~fs~dg~-~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 428 (704)
.+.+|.++.|.+++. .||+|+.|..|+||.+....... ..........+..|...|+++.
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~-------------------~~~~V~y~s~Ls~H~~aVN~vR 72 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGG-------------------GDMKVEYLSSLSRHTRAVNVVR 72 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCC-------------------CceeEEEeecccCCcceeEEEE
Confidence 457899999999866 99999999999999987522111 0012334566889999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCC--------C--------CceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 005277 429 FSPLGDFILSSSADTTIRLWSTK--------L--------NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM 492 (704)
Q Consensus 429 ~sp~~~~l~s~s~Dg~I~lwd~~--------~--------~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~ 492 (704)
|+|+|+.|+||+.+|.|.+|-.. + +.......+|...|.+++|+|++.++++++.|..+++||+
T Consensus 73 f~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv 152 (434)
T KOG1009|consen 73 FSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDV 152 (434)
T ss_pred EcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEe
Confidence 99999999999999999999765 2 2234556789999999999999999999999999999999
Q ss_pred CCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEee----------c---------CC----CC
Q 005277 493 DRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI----------G---------HR----SM 549 (704)
Q Consensus 493 ~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~----------~---------h~----~~ 549 (704)
..+.....+..|...|..++|.|-++++++-+.|...+.+++...+.+.... . |. .-
T Consensus 153 ~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksF 232 (434)
T KOG1009|consen 153 HAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSF 232 (434)
T ss_pred ccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhh
Confidence 9999999999999999999999999999999999877777765433222110 0 11 12
Q ss_pred EEEEEEecCCCEEEEEeC----CC-----eEEEEeCCC-CeeeeeecCCCceeeeeeeeeeehcccccccccccccccee
Q 005277 550 ILSLAMSPDGRYMASGDE----DG-----TIMMWDLAS-GRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFL 619 (704)
Q Consensus 550 i~~l~~spdg~~l~sg~~----dg-----~I~iwdl~~-~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~ 619 (704)
...++|+|||..|++.+. +| ..++++-.. .++...+.+...++..+.+.++..--.+......
T Consensus 233 FrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~------- 305 (434)
T KOG1009|consen 233 FRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKF------- 305 (434)
T ss_pred hhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEecccccccc-------
Confidence 345789999999987542 22 223443221 2445555555555555555433222111100000
Q ss_pred eeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEee
Q 005277 620 FYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 699 (704)
Q Consensus 620 ~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs 699 (704)
+ -.-|.+..+|.++. +.|.|||.++..+... .-.-|-..|+.++|+++|..|+..|
T Consensus 306 ------~---~~lpyrlvfaiAt~-~svyvydtq~~~P~~~--------------v~nihy~~iTDiaws~dg~~l~vSS 361 (434)
T KOG1009|consen 306 ------L---FVLPYRLVFAIATK-NSVYVYDTQTLEPLAV--------------VDNIHYSAITDIAWSDDGSVLLVSS 361 (434)
T ss_pred ------c---cccccceEEEEeec-ceEEEeccccccceEE--------------EeeeeeeeecceeecCCCcEEEEec
Confidence 0 00344556666665 5899999988654321 1223667899999999999999999
Q ss_pred cCC
Q 005277 700 LSK 702 (704)
Q Consensus 700 ~dg 702 (704)
.||
T Consensus 362 ~DG 364 (434)
T KOG1009|consen 362 TDG 364 (434)
T ss_pred cCC
Confidence 997
No 148
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=3e-20 Score=179.78 Aligned_cols=241 Identities=25% Similarity=0.366 Sum_probs=180.0
Q ss_pred eccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee--EEee--cCCcCeeEEEEcCCCCEEEEE-eCCCeEEEE
Q 005277 416 LYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL--VCYK--GHNYPVWDVQFNPQGHYFASS-SHDRTARIW 490 (704)
Q Consensus 416 ~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~--~~~~--~h~~~V~~v~~sp~~~~l~sg-s~dg~i~lw 490 (704)
.+.||.+.|++++|+.||++|++++.|++|++|+++..... ..++ -.-...+.+.|+||-+-++.. -...++++|
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vy 160 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVY 160 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence 47899999999999999999999999999999999864321 1111 112245789999987765554 456789999
Q ss_pred ECCCCc---e---------eEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecC
Q 005277 491 SMDRIQ---P---------LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD 558 (704)
Q Consensus 491 d~~~~~---~---------~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spd 558 (704)
-+...+ . ...-..|..++..+-...++.+|++++.|..|.+||++ |+.+..+......-+..+.||+
T Consensus 161 k~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~ 239 (420)
T KOG2096|consen 161 KLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPD 239 (420)
T ss_pred EeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCC
Confidence 875321 1 01122455566666666788999999999999999998 8888888766667788899999
Q ss_pred CCEEEEEeCCCeEEEEeCC---CC-----eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecc
Q 005277 559 GRYMASGDEDGTIMMWDLA---SG-----RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGC 630 (704)
Q Consensus 559 g~~l~sg~~dg~I~iwdl~---~~-----~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (704)
|+++++++-.-.|++|.+- .| ..+..+.||...|..++|
T Consensus 240 GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aF--------------------------------- 286 (420)
T KOG2096|consen 240 GRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAF--------------------------------- 286 (420)
T ss_pred CcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeee---------------------------------
Confidence 9999999999999999863 22 345678899999999999
Q ss_pred cCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccc----cCC-CCcCeEEEEEccCCcEEEEeec
Q 005277 631 ASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKT----LPT-KSTPVYSLQFSRRNLLFAAGAL 700 (704)
Q Consensus 631 ~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~----~~~-~~~~V~~l~fs~~g~~La~gs~ 700 (704)
++++..++|.|.||+++|||.+-...... .+..+.. +.. ...|+ .+..+|.|..||.+..
T Consensus 287 -sn~S~r~vtvSkDG~wriwdtdVrY~~~q--------Dpk~Lk~g~~pl~aag~~p~-RL~lsP~g~~lA~s~g 351 (420)
T KOG2096|consen 287 -SNSSTRAVTVSKDGKWRIWDTDVRYEAGQ--------DPKILKEGSAPLHAAGSEPV-RLELSPSGDSLAVSFG 351 (420)
T ss_pred -CCCcceeEEEecCCcEEEeeccceEecCC--------CchHhhcCCcchhhcCCCce-EEEeCCCCcEEEeecC
Confidence 99999999999999999999875332110 0111211 112 23344 8999999999987653
No 149
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.87 E-value=2.7e-20 Score=188.26 Aligned_cols=281 Identities=20% Similarity=0.235 Sum_probs=210.0
Q ss_pred EeeCCCCEEEEEEcCCC--CEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCe
Q 005277 347 FINTHNGLNCASISQDG--SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (704)
Q Consensus 347 ~~~~~~~V~~~~fs~dg--~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 424 (704)
..-+.+.|+|++|+|.. +++|+|..-|.|-+||+.... .....+..+..|+++|
T Consensus 182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~------------------------~d~d~v~~f~~hs~~V 237 (498)
T KOG4328|consen 182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQE------------------------KDKDGVYLFTPHSGPV 237 (498)
T ss_pred eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCC------------------------CccCceEEeccCCccc
Confidence 45678899999999963 699999999999999996311 1133556788999999
Q ss_pred EEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEeec--CCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCce-eEE
Q 005277 425 YSASFSPLG-DFILSSSADTTIRLWSTKLNANLVCYKG--HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP-LRI 500 (704)
Q Consensus 425 ~~l~~sp~~-~~l~s~s~Dg~I~lwd~~~~~~~~~~~~--h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~-~~~ 500 (704)
.++.|+|.+ ..++++|.||+|++-|++....-..+.. ....+.++.|+.+...++.+..=|...+||+++... ...
T Consensus 238 s~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~ 317 (498)
T KOG4328|consen 238 SGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYEN 317 (498)
T ss_pred cceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchh
Confidence 999999966 4788999999999999987654333333 455677889998888888888778999999998654 555
Q ss_pred eccCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCc----EEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEe
Q 005277 501 MAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGE----CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD 575 (704)
Q Consensus 501 ~~~~~~~V~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~----~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwd 575 (704)
+.-|...|.+|+++|- ..+|+|++.|++++|||+|.-. ++-....|...|.+..|||.|-.|++.+.|..|+|||
T Consensus 318 ~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~d 397 (498)
T KOG4328|consen 318 LRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFD 397 (498)
T ss_pred hhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEee
Confidence 6678889999999995 4678999999999999998532 2233447999999999999888899999999999999
Q ss_pred CC----CCeeeeeecCCCc------eeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCC
Q 005277 576 LA----SGRCVTPLMGHTS------CVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADC 645 (704)
Q Consensus 576 l~----~~~~~~~~~~h~~------~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg 645 (704)
.. .-.+...+. |.. ......| .|+..++++|-.-.
T Consensus 398 ss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W----------------------------------~P~~~li~vg~~~r 442 (498)
T KOG4328|consen 398 SSCISAKDEPLGTIP-HNNRTGRWLTPFKAAW----------------------------------DPDYNLIVVGRYPR 442 (498)
T ss_pred cccccccCCccceee-ccCcccccccchhhee----------------------------------CCCccEEEEeccCc
Confidence 73 222222222 321 1223345 89999999999999
Q ss_pred cEEEEeCCCCccccccccccCccccccccccCCCCcCeE-EEEEccCCcEEEEeec
Q 005277 646 TVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVY-SLQFSRRNLLFAAGAL 700 (704)
Q Consensus 646 ~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~-~l~fs~~g~~La~gs~ 700 (704)
.|-|+|-..++.+.... ......|. -..|+|.+..+++|+.
T Consensus 443 ~IDv~~~~~~q~v~el~--------------~P~~~tI~~vn~~HP~~~~~~aG~~ 484 (498)
T KOG4328|consen 443 PIDVFDGNGGQMVCELH--------------DPESSTIPSVNEFHPMRDTLAAGGN 484 (498)
T ss_pred ceeEEcCCCCEEeeecc--------------CccccccccceeecccccceeccCC
Confidence 99999988776433211 11112233 2478998886666654
No 150
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=9.7e-21 Score=191.60 Aligned_cols=237 Identities=20% Similarity=0.391 Sum_probs=197.6
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--ceeEEeecCCcCeeEEEEcCCCC-EEEEEeCCCeEEEEECCCCce
Q 005277 421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLN--ANLVCYKGHNYPVWDVQFNPQGH-YFASSSHDRTARIWSMDRIQP 497 (704)
Q Consensus 421 ~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~--~~~~~~~~h~~~V~~v~~sp~~~-~l~sgs~dg~i~lwd~~~~~~ 497 (704)
.++|+++.|+|....|++|+.||+++||.++.. ..+..+.-...||.+..|.|+|. .+++++.....+.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 478999999999999999999999999988743 34666666788999999999999 899999999999999987654
Q ss_pred eE--EeccCC-CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEE
Q 005277 498 LR--IMAGHL-SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMW 574 (704)
Q Consensus 498 ~~--~~~~~~-~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iw 574 (704)
.. ...++. ..+.....+|++++|+..+..|.|.+....++..+..++ -.+.|..++|+.||+.|++.+.+|.|.+|
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~ 371 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVW 371 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEE
Confidence 33 233333 357778889999999999999999999999999988885 56789999999999999999999999999
Q ss_pred eCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCC
Q 005277 575 DLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTT 654 (704)
Q Consensus 575 dl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~ 654 (704)
|++...++..+... +.|....+ |+|.+|.+||+|+..|.|.|||..+
T Consensus 372 nl~~~~~~~rf~D~-G~v~gts~--------------------------------~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 372 NLRQNSCLHRFVDD-GSVHGTSL--------------------------------CISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred ecCCcceEEEEeec-Cccceeee--------------------------------eecCCCceEEeccCcceEEEeccch
Confidence 99999888887633 33333332 3389999999999999999999776
Q ss_pred CccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeec
Q 005277 655 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL 700 (704)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~ 700 (704)
... ...++++.++....+.|++++|++|.++||.+|.
T Consensus 419 ~~~---------s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~ 455 (514)
T KOG2055|consen 419 CFA---------STNPKPIKTVDNLTTAITSLQFNHDAQILAIASR 455 (514)
T ss_pred hhc---------cCCCCchhhhhhhheeeeeeeeCcchhhhhhhhh
Confidence 432 1223567788888899999999999999998875
No 151
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.86 E-value=3.6e-20 Score=195.74 Aligned_cols=311 Identities=22% Similarity=0.325 Sum_probs=228.7
Q ss_pred EeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCC----------CCCcccc-c--CCCCC---
Q 005277 347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGEND----------TTPREDI-I--GPNGR--- 410 (704)
Q Consensus 347 ~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~----------~~~~~~~-~--~~~~~--- 410 (704)
+.+|.+-|.++.|+|.+..|++++.|.++.||.-......-......+... ..+.... + +..+.
T Consensus 263 l~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hl 342 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHL 342 (764)
T ss_pred hcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEE
Confidence 349999999999999999999999999999998665311111000000000 0011100 0 01111
Q ss_pred --------ccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----ceeEEeecCCcCeeEEEEcCCCCEE
Q 005277 411 --------KRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN----ANLVCYKGHNYPVWDVQFNPQGHYF 478 (704)
Q Consensus 411 --------~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~----~~~~~~~~h~~~V~~v~~sp~~~~l 478 (704)
........||.+.|.+++|+|.|.+|++.|.|-|-|++-.-.. ..+..-+-|...++|++|-+....|
T Consensus 343 Wkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~F 422 (764)
T KOG1063|consen 343 WKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQF 422 (764)
T ss_pred EeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCcee
Confidence 1122335689999999999999999999999999999865511 2233334588899999999877889
Q ss_pred EEEeCCCeEEEEECC-------------------------------------------CCc-------------------
Q 005277 479 ASSSHDRTARIWSMD-------------------------------------------RIQ------------------- 496 (704)
Q Consensus 479 ~sgs~dg~i~lwd~~-------------------------------------------~~~------------------- 496 (704)
++|.....+|+|+.. ++.
T Consensus 423 VSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~e 502 (764)
T KOG1063|consen 423 VSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTE 502 (764)
T ss_pred eecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccC
Confidence 999999999999753 000
Q ss_pred --------------eeEEeccCCCCeeEEEEcCCCCEEEEEECC-----CcEEEEeCCCCcEEEEeecCCCCEEEEEEec
Q 005277 497 --------------PLRIMAGHLSDVDCVRWHINCNYIATGSSD-----KTVRLWDVSSGECVRIFIGHRSMILSLAMSP 557 (704)
Q Consensus 497 --------------~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d-----g~I~iwd~~~~~~~~~~~~h~~~i~~l~~sp 557 (704)
.+..+.||...|.|++.+|+++++|+++.. ..|++|+..+-..+..+.+|.-.|+.++|||
T Consensus 503 PP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp 582 (764)
T KOG1063|consen 503 PPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP 582 (764)
T ss_pred CChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC
Confidence 012245888999999999999999998743 4599999998888888999999999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCe----eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCC
Q 005277 558 DGRYMASGDEDGTIMMWDLASGR----CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASC 633 (704)
Q Consensus 558 dg~~l~sg~~dg~I~iwdl~~~~----~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 633 (704)
||++|++.+.|.++.+|...... .....+.|+.-|++.+| +|
T Consensus 583 dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW----------------------------------~p 628 (764)
T KOG1063|consen 583 DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSW----------------------------------SP 628 (764)
T ss_pred CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEccc----------------------------------Cc
Confidence 99999999999999999875432 23346789999999999 99
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccC-----CcEEEEeecCC
Q 005277 634 EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRR-----NLLFAAGALSK 702 (704)
Q Consensus 634 ~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~-----g~~La~gs~dg 702 (704)
++.+++|+|.|.+|+||........ .+..+ ....+..+|++++|.|- +.++++|-..|
T Consensus 629 de~~FaTaSRDK~VkVW~~~~~~d~----------~i~~~-a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~G 691 (764)
T KOG1063|consen 629 DEKYFATASRDKKVKVWEEPDLRDK----------YISRF-ACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKG 691 (764)
T ss_pred ccceeEEecCCceEEEEeccCchhh----------hhhhh-chhccCCceeeEEeeccccccccceEEEEeccc
Confidence 9999999999999999999876210 00111 33456788999999762 23667665544
No 152
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.7e-21 Score=217.00 Aligned_cols=234 Identities=23% Similarity=0.396 Sum_probs=192.0
Q ss_pred ccCeEEEEEcCCCCE----EEEEeCCCeEEEEeCCCC------ceeEEeecCCcCeeEEEEcCC-CCEEEEEeCCCeEEE
Q 005277 421 SGPVYSASFSPLGDF----ILSSSADTTIRLWSTKLN------ANLVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARI 489 (704)
Q Consensus 421 ~~~V~~l~~sp~~~~----l~s~s~Dg~I~lwd~~~~------~~~~~~~~h~~~V~~v~~sp~-~~~l~sgs~dg~i~l 489 (704)
....+.++|.+.+.. |+.|..||.|.+||...- ..+.++..|+++|..+.|++. ++.+|+|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 356789999988765 888999999999998752 235667789999999999995 559999999999999
Q ss_pred EECCCCceeEEec--cCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCCcEEEEeecCCC--CEEEEEEecCCC-EEE
Q 005277 490 WSMDRIQPLRIMA--GHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS--MILSLAMSPDGR-YMA 563 (704)
Q Consensus 490 wd~~~~~~~~~~~--~~~~~V~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~--~i~~l~~spdg~-~l~ 563 (704)
||+.+.+.-.... ...+.|.|++|+. ...+|++++.+|.+.|||++..+.+-.+..+.+ .+..++|+|++. .|+
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~ 223 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL 223 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence 9998855443331 2457899999986 467888999999999999999888877765554 578899999863 455
Q ss_pred EEeCC---CeEEEEeCCCC-eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCC-CCCEE
Q 005277 564 SGDED---GTIMMWDLASG-RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASC-EGSLL 638 (704)
Q Consensus 564 sg~~d---g~I~iwdl~~~-~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~l 638 (704)
+++.| -.|.+||+|.- .+++.+.+|...|.+++| ++ |..++
T Consensus 224 ~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsW----------------------------------c~~D~~ll 269 (1049)
T KOG0307|consen 224 VASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSW----------------------------------CPQDPRLL 269 (1049)
T ss_pred eecCCCCCceeEeecccccCCchhhhcccccceeeecc----------------------------------CCCCchhh
Confidence 55544 37999999864 577888999999999999 55 45899
Q ss_pred EEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCc-EEEEeecCCC
Q 005277 639 ASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL-LFAAGALSKT 703 (704)
Q Consensus 639 asgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~-~La~gs~dgt 703 (704)
++++.|+.|.+|+.++++. +..+++....++.+.|+|.+. ++++++.||.
T Consensus 270 lSsgkD~~ii~wN~~tgEv---------------l~~~p~~~nW~fdv~w~pr~P~~~A~asfdgk 320 (1049)
T KOG0307|consen 270 LSSGKDNRIICWNPNTGEV---------------LGELPAQGNWCFDVQWCPRNPSVMAAASFDGK 320 (1049)
T ss_pred hcccCCCCeeEecCCCceE---------------eeecCCCCcceeeeeecCCCcchhhhheeccc
Confidence 9999999999999999754 677888889999999999987 8888888874
No 153
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=2.8e-21 Score=215.24 Aligned_cols=254 Identities=22% Similarity=0.430 Sum_probs=206.9
Q ss_pred eeCCCCEEEEEEcCCCCE----EEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC
Q 005277 348 INTHNGLNCASISQDGSL----VAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (704)
Q Consensus 348 ~~~~~~V~~~~fs~dg~~----lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 423 (704)
+.....-+.++|++.|.. ||.|..||.|.+||..... .+.....+.....|+++
T Consensus 61 ~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~----------------------~~~~~~~la~~~~h~G~ 118 (1049)
T KOG0307|consen 61 LQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASII----------------------ANASEEVLATKSKHTGP 118 (1049)
T ss_pred ccccccceeeeecccCCCccceeeccccCCceEEecchhhc----------------------cCcchHHHhhhcccCCc
Confidence 344556788999987765 9999999999999976520 11223455667789999
Q ss_pred eEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEee--cCCcCeeEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeE
Q 005277 424 VYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYK--GHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPLR 499 (704)
Q Consensus 424 V~~l~~sp~~~-~l~s~s~Dg~I~lwd~~~~~~~~~~~--~h~~~V~~v~~sp-~~~~l~sgs~dg~i~lwd~~~~~~~~ 499 (704)
|.++.|++... +|++|+.||.|.|||+...+.-..+. .....|.+++|+. ..+.|++++.+|.+.|||++..+++-
T Consensus 119 V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii 198 (1049)
T KOG0307|consen 119 VLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPII 198 (1049)
T ss_pred eeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccc
Confidence 99999999776 89999999999999998754443332 2456799999998 45678999999999999999998888
Q ss_pred EeccCCC--CeeEEEEcCCC-CEEEEEECC---CcEEEEeCCC-CcEEEEeecCCCCEEEEEEecCC-CEEEEEeCCCeE
Q 005277 500 IMAGHLS--DVDCVRWHINC-NYIATGSSD---KTVRLWDVSS-GECVRIFIGHRSMILSLAMSPDG-RYMASGDEDGTI 571 (704)
Q Consensus 500 ~~~~~~~--~V~~v~~~p~~-~~l~tgs~d---g~I~iwd~~~-~~~~~~~~~h~~~i~~l~~spdg-~~l~sg~~dg~I 571 (704)
.+..+.. .+..+.|||+. ..|++++.| -.|.+||+|. ..+++++.+|...|.++.|++.+ ++|++++.|+.|
T Consensus 199 ~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~i 278 (1049)
T KOG0307|consen 199 KLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRI 278 (1049)
T ss_pred ccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCe
Confidence 7776554 46789999975 556666654 3599999984 56778889999999999999966 899999999999
Q ss_pred EEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCC-CCEEEEEeCCCcEEEE
Q 005277 572 MMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCE-GSLLASGSADCTVKLW 650 (704)
Q Consensus 572 ~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-g~~lasgs~Dg~V~iW 650 (704)
.+|+..+++.+..+......+..+.| +|. ...+++++-||.|.|+
T Consensus 279 i~wN~~tgEvl~~~p~~~nW~fdv~w----------------------------------~pr~P~~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 279 ICWNPNTGEVLGELPAQGNWCFDVQW----------------------------------CPRNPSVMAAASFDGKISIY 324 (1049)
T ss_pred eEecCCCceEeeecCCCCcceeeeee----------------------------------cCCCcchhhhheeccceeee
Confidence 99999999999999988888999999 554 4588999999999999
Q ss_pred eCCCCcc
Q 005277 651 DVTTSTK 657 (704)
Q Consensus 651 d~~~~~~ 657 (704)
.+.....
T Consensus 325 sl~~~~~ 331 (1049)
T KOG0307|consen 325 SLQGTDT 331 (1049)
T ss_pred eeecCCc
Confidence 9987653
No 154
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.86 E-value=3.2e-20 Score=194.41 Aligned_cols=255 Identities=22% Similarity=0.329 Sum_probs=191.3
Q ss_pred EEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC
Q 005277 344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (704)
Q Consensus 344 ~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 423 (704)
++.+.-|.+.|..+.|-|....|++++.|.++++||+..... .....+.||.+.
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l--------------------------~G~~~~~GH~~S 146 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL--------------------------VGGRLNLGHTGS 146 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee--------------------------ecceeecccccc
Confidence 556778999999999999888999999999999999986321 122357899999
Q ss_pred eEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCce---------------------------eEEeecCCcCeeE---EEEc
Q 005277 424 VYSASFSPLGD-FILSSSADTTIRLWSTKLNAN---------------------------LVCYKGHNYPVWD---VQFN 472 (704)
Q Consensus 424 V~~l~~sp~~~-~l~s~s~Dg~I~lwd~~~~~~---------------------------~~~~~~h~~~V~~---v~~s 472 (704)
|.+++|.|.+. .+++|+.||.|.|||++-... +..-+.+...|.+ +.+.
T Consensus 147 vkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f 226 (720)
T KOG0321|consen 147 VKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF 226 (720)
T ss_pred cchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEE
Confidence 99999999876 567999999999999873320 1111223444555 5566
Q ss_pred CCCCEEEEEeC-CCeEEEEECCCCcee------EEec--cC---CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC--c
Q 005277 473 PQGHYFASSSH-DRTARIWSMDRIQPL------RIMA--GH---LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG--E 538 (704)
Q Consensus 473 p~~~~l~sgs~-dg~i~lwd~~~~~~~------~~~~--~~---~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~--~ 538 (704)
.|...||+++. |+.|+|||+++.... .... -| .-.+.++.....|.+|++.+.|++|++|++.+- .
T Consensus 227 kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~s 306 (720)
T KOG0321|consen 227 KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSIS 306 (720)
T ss_pred eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcC
Confidence 68889999987 999999999864422 2211 22 234677777788999999999999999999854 3
Q ss_pred EEEEeecCCCC--EEEEEEecCCCEEEEEeCCCeEEEEeCCCCe-eeeeecCCCceeeeeeeeeeehccccccccccccc
Q 005277 539 CVRIFIGHRSM--ILSLAMSPDGRYMASGDEDGTIMMWDLASGR-CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVS 615 (704)
Q Consensus 539 ~~~~~~~h~~~--i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~-~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~ 615 (704)
++..+.++... -..-..+||+.+|++|+.|....+|.+.+.. ....+.+|.-.|+++.|..
T Consensus 307 P~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~p---------------- 370 (720)
T KOG0321|consen 307 PVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLP---------------- 370 (720)
T ss_pred chhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecc----------------
Confidence 34444444321 2233568999999999999999999998764 4566789999999999932
Q ss_pred cceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcc
Q 005277 616 TGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTK 657 (704)
Q Consensus 616 ~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~ 657 (704)
++... +++++.|..++||++..+-.
T Consensus 371 ----------------S~~t~-v~TcSdD~~~kiW~l~~~l~ 395 (720)
T KOG0321|consen 371 ----------------SATTP-VATCSDDFRVKIWRLSNGLE 395 (720)
T ss_pred ----------------ccCCC-ceeeccCcceEEEeccCchh
Confidence 55554 55559999999999976543
No 155
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.85 E-value=1.3e-19 Score=188.94 Aligned_cols=149 Identities=22% Similarity=0.383 Sum_probs=121.9
Q ss_pred eeEEEEcC-CCCEEEEEECCCcEEEEeCCCC-------cEEEEeecCCCCEEEEEEec-CCCEEEEEeCCCeEEEEeCCC
Q 005277 508 VDCVRWHI-NCNYIATGSSDKTVRLWDVSSG-------ECVRIFIGHRSMILSLAMSP-DGRYMASGDEDGTIMMWDLAS 578 (704)
Q Consensus 508 V~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~-------~~~~~~~~h~~~i~~l~~sp-dg~~l~sg~~dg~I~iwdl~~ 578 (704)
|+.+.|.| |...|++++.||.|++|.+..+ .+-..+++|...|+++.|+| -...|++++.|-+|++||+++
T Consensus 630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~ 709 (1012)
T KOG1445|consen 630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN 709 (1012)
T ss_pred eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh
Confidence 44455665 4567999999999999998754 34456789999999999999 457899999999999999999
Q ss_pred CeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccc
Q 005277 579 GRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKV 658 (704)
Q Consensus 579 ~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~ 658 (704)
++....+.+|++.|.+++| ||+|+.+|+.+.||+|+||+-.++...
T Consensus 710 ~~~~~~l~gHtdqIf~~AW----------------------------------SpdGr~~AtVcKDg~~rVy~Prs~e~p 755 (1012)
T KOG1445|consen 710 AKLYSRLVGHTDQIFGIAW----------------------------------SPDGRRIATVCKDGTLRVYEPRSREQP 755 (1012)
T ss_pred hhhhheeccCcCceeEEEE----------------------------------CCCCcceeeeecCceEEEeCCCCCCCc
Confidence 9999999999999999999 999999999999999999998876542
Q ss_pred cccccccCccccccccccC-CCCcCeEEEEEccCCcEEEEeecCCCC
Q 005277 659 LKTEEKSGTNRLRSLKTLP-TKSTPVYSLQFSRRNLLFAAGALSKTS 704 (704)
Q Consensus 659 ~~~~~~~~~~~~~~l~~~~-~~~~~V~~l~fs~~g~~La~gs~dgt~ 704 (704)
+..-+ ...+.--.+.|--+|.++++.++|+.|
T Consensus 756 --------------v~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~S 788 (1012)
T KOG1445|consen 756 --------------VYEGKGPVGTRGARILWACDGRIVIVVGFDKSS 788 (1012)
T ss_pred --------------cccCCCCccCcceeEEEEecCcEEEEecccccc
Confidence 11111 112334567899999999999998764
No 156
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.84 E-value=1.6e-19 Score=175.70 Aligned_cols=285 Identities=18% Similarity=0.299 Sum_probs=213.2
Q ss_pred eeCCCCEEEEEEcC-----CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeec--cCC
Q 005277 348 INTHNGLNCASISQ-----DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY--QGH 420 (704)
Q Consensus 348 ~~~~~~V~~~~fs~-----dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h 420 (704)
.+|...|..++|++ ....+|+.+ ...+.+|....... .+..+.. ..|
T Consensus 35 ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~-------------------------ir~lq~y~D~d~ 88 (385)
T KOG1034|consen 35 EDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGG-------------------------IRLLQSYADEDH 88 (385)
T ss_pred ccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccc-------------------------eeeeeeccCCCC
Confidence 45667888899884 244555554 45688888765221 0111111 136
Q ss_pred ccCeEEEEEcCC----CCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCC-CCEEEEEeCCCeEEEEECCCC
Q 005277 421 SGPVYSASFSPL----GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRI 495 (704)
Q Consensus 421 ~~~V~~l~~sp~----~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~-~~~l~sgs~dg~i~lwd~~~~ 495 (704)
....+.++|+-+ +.+++.|+.-|.|+|.|+.++++...+.+|...|..+.+.|+ .+++++||.|.+|++|++++.
T Consensus 89 ~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~ 168 (385)
T KOG1034|consen 89 DESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD 168 (385)
T ss_pred CcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC
Confidence 677888888654 458899999999999999999999999999999999999995 578999999999999999999
Q ss_pred ceeEEec---cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcE------E-------------------E---Eee
Q 005277 496 QPLRIMA---GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC------V-------------------R---IFI 544 (704)
Q Consensus 496 ~~~~~~~---~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~------~-------------------~---~~~ 544 (704)
.++..+. +|.+.|.++.|+++|.+|++++.|.++.+|++...+. . . +-.
T Consensus 169 ~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~d 248 (385)
T KOG1034|consen 169 VCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTD 248 (385)
T ss_pred eEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccc
Confidence 9998875 6999999999999999999999999999999973210 0 0 112
Q ss_pred cCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCC-CCee-------------eeeecCCCceeeeeeeeeeehcccccccc
Q 005277 545 GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA-SGRC-------------VTPLMGHTSCVWTLAYRFLLLVTNAYLKI 610 (704)
Q Consensus 545 ~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~-~~~~-------------~~~~~~h~~~V~sl~~~~~~~~~~~~~~~ 610 (704)
-|...|-|+.|- |.++++=+.++.|..|... -++. +..+.-....+|-+.|.+
T Consensus 249 iHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~----------- 315 (385)
T KOG1034|consen 249 IHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAF----------- 315 (385)
T ss_pred cccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEee-----------
Confidence 467777778774 7899999999999999872 2222 222223334455555522
Q ss_pred ccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEcc
Q 005277 611 SDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSR 690 (704)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~ 690 (704)
.+-+++||.|...|.|.+||+........ ...+.......|...+||.
T Consensus 316 ---------------------d~~~~~la~gnq~g~v~vwdL~~~ep~~~-----------ttl~~s~~~~tVRQ~sfS~ 363 (385)
T KOG1034|consen 316 ---------------------DPWQKMLALGNQSGKVYVWDLDNNEPPKC-----------TTLTHSKSGSTVRQTSFSR 363 (385)
T ss_pred ---------------------cHHHHHHhhccCCCcEEEEECCCCCCccC-----------ceEEeccccceeeeeeecc
Confidence 67789999999999999999998764310 0112223456799999999
Q ss_pred CCcEEEEeecCCC
Q 005277 691 RNLLFAAGALSKT 703 (704)
Q Consensus 691 ~g~~La~gs~dgt 703 (704)
||.+|+....|++
T Consensus 364 dgs~lv~vcdd~~ 376 (385)
T KOG1034|consen 364 DGSILVLVCDDGT 376 (385)
T ss_pred cCcEEEEEeCCCc
Confidence 9999999999886
No 157
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.5e-19 Score=174.89 Aligned_cols=236 Identities=16% Similarity=0.265 Sum_probs=180.3
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc
Q 005277 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG 503 (704)
Q Consensus 424 V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~ 503 (704)
..|+.|++.|.+|++|+.||.|.|||+.+......+.+|..||++++||++|+.++|+|.|..|.+||+..+.++..+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 7899999999999999999999999999999889999999999999999999999999999999999999999988877
Q ss_pred CCCCeeEEEEcCCC-CEEEEEECCCcEEEEeCCCCcEEEEeecC----CCCEEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 005277 504 HLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECVRIFIGH----RSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578 (704)
Q Consensus 504 ~~~~V~~v~~~p~~-~~l~tgs~dg~I~iwd~~~~~~~~~~~~h----~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~ 578 (704)
..++|..+.|||.. +..++.-.+..-.+-++..++....-... +....+..|.+.|+++++|...|.+.++|..+
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t 184 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET 184 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence 67899999999953 34444434555556666543221111111 11223446889999999999999999999999
Q ss_pred CeeeeeecCCC-ceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcc
Q 005277 579 GRCVTPLMGHT-SCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTK 657 (704)
Q Consensus 579 ~~~~~~~~~h~-~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~ 657 (704)
.+++..++--. ..|.++.+ +..|++|+.-+.|..||.|++..--.
T Consensus 185 ~e~vas~rits~~~IK~I~~----------------------------------s~~g~~liiNtsDRvIR~ye~~di~~ 230 (405)
T KOG1273|consen 185 LECVASFRITSVQAIKQIIV----------------------------------SRKGRFLIINTSDRVIRTYEISDIDD 230 (405)
T ss_pred heeeeeeeechheeeeEEEE----------------------------------eccCcEEEEecCCceEEEEehhhhcc
Confidence 99998887555 67777777 88999999999999999999873211
Q ss_pred ccccccccCccccccccccC--CCCcCeEEEEEccCCcEEEEeec
Q 005277 658 VLKTEEKSGTNRLRSLKTLP--TKSTPVYSLQFSRRNLLFAAGAL 700 (704)
Q Consensus 658 ~~~~~~~~~~~~~~~l~~~~--~~~~~V~~l~fs~~g~~La~gs~ 700 (704)
... . ....+...+. -...+-.++.||.+|.++++|+.
T Consensus 231 ~~r----~--~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~ 269 (405)
T KOG1273|consen 231 EGR----D--GEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSA 269 (405)
T ss_pred cCc----c--CCcChhHHHHHHHhhhhhhheeecCCccEEEeccc
Confidence 100 0 0001111111 12334567899999999999874
No 158
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.84 E-value=8.1e-18 Score=181.98 Aligned_cols=281 Identities=36% Similarity=0.633 Sum_probs=224.6
Q ss_pred EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCc-cCe
Q 005277 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS-GPV 424 (704)
Q Consensus 346 ~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V 424 (704)
....|...+.++.|.+.+..++.++.|+.+.+|+..... .....+.++. ..+
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~ 112 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE---------------------------KLIKSLEGLHDSSV 112 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc---------------------------eeEEEEeccCCCce
Confidence 356788999999999999999999999999999987521 1223333322 367
Q ss_pred EEEEE-cCCCC-EEEEEeC-CCeEEEEeCCC-CceeEEeecCCcCeeEEEEcCCCCEEEEEeC-CCeEEEEECCCCceeE
Q 005277 425 YSASF-SPLGD-FILSSSA-DTTIRLWSTKL-NANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DRTARIWSMDRIQPLR 499 (704)
Q Consensus 425 ~~l~~-sp~~~-~l~s~s~-Dg~I~lwd~~~-~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~-dg~i~lwd~~~~~~~~ 499 (704)
..+.+ ++++. .++..+. |+.+.+|+... ......+..|...|.+++|+|++.++++++. |+.+++|+......+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (466)
T COG2319 113 SKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLS 192 (466)
T ss_pred eeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEE
Confidence 77777 78787 5555444 99999999998 7888889999999999999999999888886 9999999999988999
Q ss_pred EeccCCCCeeEEEEcCCCC-EEEEEECCCcEEEEeCCCCcEEE-EeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 005277 500 IMAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSGECVR-IFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA 577 (704)
Q Consensus 500 ~~~~~~~~V~~v~~~p~~~-~l~tgs~dg~I~iwd~~~~~~~~-~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~ 577 (704)
.+.+|...|.+++|+|++. ++++++.|+.|++||...+..+. .+.+|.... ...|+|++.++++++.|+.+++||+.
T Consensus 193 ~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~ 271 (466)
T COG2319 193 TLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLR 271 (466)
T ss_pred eeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeec
Confidence 9999999999999999998 55555899999999999888888 688888875 44899999999999999999999998
Q ss_pred CCee-eeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCc
Q 005277 578 SGRC-VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTST 656 (704)
Q Consensus 578 ~~~~-~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~ 656 (704)
.... +..+.+|...+.++.| +|++..+++++.|+.+.+|+.....
T Consensus 272 ~~~~~~~~~~~~~~~v~~~~~----------------------------------~~~~~~~~~~~~d~~~~~~~~~~~~ 317 (466)
T COG2319 272 SSSSLLRTLSGHSSSVLSVAF----------------------------------SPDGKLLASGSSDGTVRLWDLETGK 317 (466)
T ss_pred CCCcEEEEEecCCccEEEEEE----------------------------------CCCCCEEEEeeCCCcEEEEEcCCCc
Confidence 7664 4444678888999888 8888888889999999999887765
Q ss_pred cccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEe-ecC
Q 005277 657 KVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAG-ALS 701 (704)
Q Consensus 657 ~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~g-s~d 701 (704)
..... . ...|...|..+.|.+++..++.+ ..|
T Consensus 318 ~~~~~------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~d 350 (466)
T COG2319 318 LLSSL------------T-LKGHEGPVSSLSFSPDGSLLVSGGSDD 350 (466)
T ss_pred eEEEe------------e-ecccCCceEEEEECCCCCEEEEeecCC
Confidence 43111 1 23455578888884332445544 444
No 159
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.1e-18 Score=184.64 Aligned_cols=234 Identities=18% Similarity=0.324 Sum_probs=195.0
Q ss_pred CCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-eEEeecC-CcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 005277 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN-LVCYKGH-NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ 496 (704)
Q Consensus 419 ~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~-~~~~~~h-~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~ 496 (704)
--..+|.+++|+.+.+.||.+-.||.|.+|++..+-. ...+.++ ...|-+++|++.+ .|++.+.+|.|.-||+-+.+
T Consensus 23 ~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~-RLFS~g~sg~i~EwDl~~lk 101 (691)
T KOG2048|consen 23 YKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG-RLFSSGLSGSITEWDLHTLK 101 (691)
T ss_pred eeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC-eEEeecCCceEEEEecccCc
Confidence 3457899999999999999999999999999987544 3344444 5679999999544 57778889999999999999
Q ss_pred eeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEE--EeecCCCCEEEEEEecCCCEEEEEeCCCeEEEE
Q 005277 497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVR--IFIGHRSMILSLAMSPDGRYMASGDEDGTIMMW 574 (704)
Q Consensus 497 ~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~--~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iw 574 (704)
+...+....+.|++++.+|.+..+++|+.||.+..++...++... .+...++.|.++.|+|++..|++|+.||.|++|
T Consensus 102 ~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriw 181 (691)
T KOG2048|consen 102 QKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIW 181 (691)
T ss_pred eeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEE
Confidence 999999999999999999999999999999988888887776543 344556899999999999999999999999999
Q ss_pred eCCCCeeeeeec--------CCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCc
Q 005277 575 DLASGRCVTPLM--------GHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCT 646 (704)
Q Consensus 575 dl~~~~~~~~~~--------~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~ 646 (704)
|..++..+.... +....||++.+ - ....|++|..-|+
T Consensus 182 d~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~----------------------------------L-rd~tI~sgDS~G~ 226 (691)
T KOG2048|consen 182 DVKSGQTLHIITMQLDRLSKREPTIVWSVLF----------------------------------L-RDSTIASGDSAGT 226 (691)
T ss_pred EcCCCceEEEeeecccccccCCceEEEEEEE----------------------------------e-ecCcEEEecCCce
Confidence 999987766221 12235566555 2 3358999999999
Q ss_pred EEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 647 VKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 647 V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
|.+||...++ ++..+..|...|.+++.++++..+.+++.|+.
T Consensus 227 V~FWd~~~gT---------------LiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ 268 (691)
T KOG2048|consen 227 VTFWDSIFGT---------------LIQSHSCHDADVLALAVADNEDRVFSAGVDPK 268 (691)
T ss_pred EEEEcccCcc---------------hhhhhhhhhcceeEEEEcCCCCeEEEccCCCc
Confidence 9999998875 46677788999999999999999999998874
No 160
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.84 E-value=6.5e-20 Score=186.60 Aligned_cols=233 Identities=16% Similarity=0.297 Sum_probs=193.8
Q ss_pred CCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeec
Q 005277 338 ALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY 417 (704)
Q Consensus 338 ~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (704)
.+|.++.....+.. .-.|++......++++|+..++|+|||+.. +...+.+
T Consensus 67 ~~~~Vp~~~k~~gd-~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~----------------------------kl~hr~l 117 (673)
T KOG4378|consen 67 KTPEVPRVRKLTGD-NAFCVACASQSLYEISGGQSGCVKIWDLRA----------------------------KLIHRFL 117 (673)
T ss_pred CCCccceeeccccc-hHHHHhhhhcceeeeccCcCceeeehhhHH----------------------------HHHhhhc
Confidence 45555554443333 444555545558999999999999999974 4566778
Q ss_pred cCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecC-CcCeeEEEEcCCCC-EEEEEeCCCeEEEEECCCC
Q 005277 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH-NYPVWDVQFNPQGH-YFASSSHDRTARIWSMDRI 495 (704)
Q Consensus 418 ~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h-~~~V~~v~~sp~~~-~l~sgs~dg~i~lwd~~~~ 495 (704)
.+|...|+++.++-...||++++..|.|.|..+.++.....+... ...|.-+.|+|..+ ++.+++.+|.|.+||+...
T Consensus 118 kdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~ 197 (673)
T KOG4378|consen 118 KDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGM 197 (673)
T ss_pred cCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCC
Confidence 999999999999999999999999999999999999888888754 44566899999654 5778899999999999988
Q ss_pred ceeEEe-ccCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEE
Q 005277 496 QPLRIM-AGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMM 573 (704)
Q Consensus 496 ~~~~~~-~~~~~~V~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~i 573 (704)
.++..+ ..|..+...|+|+|. ..+|++.+.|..|.+||++..+....+. ...+.+.++|+++|.+|++|...|.|..
T Consensus 198 sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~ 276 (673)
T KOG4378|consen 198 SPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIA 276 (673)
T ss_pred CcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEE
Confidence 887665 469999999999994 5677889999999999999877766553 4568999999999999999999999999
Q ss_pred EeCCC-CeeeeeecCCCceeeeeeeeee
Q 005277 574 WDLAS-GRCVTPLMGHTSCVWTLAYRFL 600 (704)
Q Consensus 574 wdl~~-~~~~~~~~~h~~~V~sl~~~~~ 600 (704)
||++. ..++..+..|...|++++|.+.
T Consensus 277 YD~R~~k~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 277 YDMRSTKAPVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred EecccCCCCceEeeecccceeEEEeeec
Confidence 99986 4678999999999999999665
No 161
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=8.9e-20 Score=184.11 Aligned_cols=192 Identities=23% Similarity=0.385 Sum_probs=158.8
Q ss_pred CCEEEEEeCCCeEEEEeCCCCcee---------------------EEeecCCcCeeEEEEcCC-CCEEEEEeCCCeEEEE
Q 005277 433 GDFILSSSADTTIRLWSTKLNANL---------------------VCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIW 490 (704)
Q Consensus 433 ~~~l~s~s~Dg~I~lwd~~~~~~~---------------------~~~~~h~~~V~~v~~sp~-~~~l~sgs~dg~i~lw 490 (704)
|++++.|+.|..|.|||+.-...+ ....+|+..|.+++|+.. .+.||+||.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 579999999999999998732111 112368888989999874 5679999999999999
Q ss_pred ECCCCceeEEeccCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCC-CEEEEEeCC
Q 005277 491 SMDRIQPLRIMAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG-RYMASGDED 568 (704)
Q Consensus 491 d~~~~~~~~~~~~~~~~V~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg-~~l~sg~~d 568 (704)
|++++++..++..|...|.++.|||. ..+|++|+.|++|.+.|+|........-...+.|-.++|.|.. ..++++..|
T Consensus 272 D~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tdd 351 (463)
T KOG0270|consen 272 DVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDD 351 (463)
T ss_pred EcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCC
Confidence 99999999999999999999999985 6889999999999999999532222222345789999999965 467778899
Q ss_pred CeEEEEeCCCC-eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcE
Q 005277 569 GTIMMWDLASG-RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTV 647 (704)
Q Consensus 569 g~I~iwdl~~~-~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V 647 (704)
|+|+-+|+|.. +++.++.+|.++|.+++++ .....+++|++.|+.|
T Consensus 352 G~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n---------------------------------~~~p~~l~t~s~d~~V 398 (463)
T KOG0270|consen 352 GTVYYFDIRNPGKPVWTLKAHDDEISGLSVN---------------------------------IQTPGLLSTASTDKVV 398 (463)
T ss_pred ceEEeeecCCCCCceeEEEeccCCcceEEec---------------------------------CCCCcceeeccccceE
Confidence 99999999975 8999999999999999983 3345689999999999
Q ss_pred EEEeCCCCcc
Q 005277 648 KLWDVTTSTK 657 (704)
Q Consensus 648 ~iWd~~~~~~ 657 (704)
++|++.....
T Consensus 399 klw~~~~~~~ 408 (463)
T KOG0270|consen 399 KLWKFDVDSP 408 (463)
T ss_pred EEEeecCCCC
Confidence 9999987543
No 162
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=2e-19 Score=187.12 Aligned_cols=241 Identities=24% Similarity=0.393 Sum_probs=198.5
Q ss_pred cceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCE--EEEEeCCCeEEE
Q 005277 412 RSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY--FASSSHDRTARI 489 (704)
Q Consensus 412 ~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~--l~sgs~dg~i~l 489 (704)
.+...+.||++.|.+|+..|.|.+|++|+.||+|+||.+.++.|+.++. ..+.|.||+|+|.+.. +|++-. +.+.|
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~-~~~~i 468 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVG-ECVLI 468 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEec-CceEE
Confidence 4556789999999999999999999999999999999999999999887 4568999999996543 444433 22333
Q ss_pred EEC---------------------------------CC----CceeEEeccCCCCeeEEEEcCCCCEEEEEEC---CCcE
Q 005277 490 WSM---------------------------------DR----IQPLRIMAGHLSDVDCVRWHINCNYIATGSS---DKTV 529 (704)
Q Consensus 490 wd~---------------------------------~~----~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~---dg~I 529 (704)
-+. .. ..-++..-.|...|..+.||..|.||++... ...|
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV 548 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence 332 10 0012344457888999999999999999765 3569
Q ss_pred EEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccc
Q 005277 530 RLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLK 609 (704)
Q Consensus 530 ~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~ 609 (704)
.|+++...+...-|....+.|.++.|+|...+|++++. ..|+|||+..+..++.+......|.+++.
T Consensus 549 liHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msi------------ 615 (733)
T KOG0650|consen 549 LIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSI------------ 615 (733)
T ss_pred EEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeee------------
Confidence 99999877776667677788999999999999888875 47999999998888888877778888887
Q ss_pred cccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEc
Q 005277 610 ISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFS 689 (704)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs 689 (704)
+|.|.-|+.|+.|+.+..+|+.-..+ ...++..|...|++|+|+
T Consensus 616 ----------------------hp~GDnli~gs~d~k~~WfDldlssk--------------Pyk~lr~H~~avr~Va~H 659 (733)
T KOG0650|consen 616 ----------------------HPNGDNLILGSYDKKMCWFDLDLSSK--------------PYKTLRLHEKAVRSVAFH 659 (733)
T ss_pred ----------------------cCCCCeEEEecCCCeeEEEEcccCcc--------------hhHHhhhhhhhhhhhhhc
Confidence 99999999999999999999987654 366788899999999999
Q ss_pred cCCcEEEEeecCCC
Q 005277 690 RRNLLFAAGALSKT 703 (704)
Q Consensus 690 ~~g~~La~gs~dgt 703 (704)
+.-.++|+|+.||+
T Consensus 660 ~ryPLfas~sdDgt 673 (733)
T KOG0650|consen 660 KRYPLFASGSDDGT 673 (733)
T ss_pred cccceeeeecCCCc
Confidence 99999999999986
No 163
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=5.3e-20 Score=190.85 Aligned_cols=259 Identities=21% Similarity=0.317 Sum_probs=200.8
Q ss_pred EEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCe
Q 005277 345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (704)
Q Consensus 345 ~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 424 (704)
+++..|.+.|+.++|.|-...|++|+.||.+.+|++..... ........+..+.+|.++|
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~--------------------s~~~~~epi~tfraH~gPV 347 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKK--------------------SAEKDVEPILTFRAHEGPV 347 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCC--------------------ccccceeeeEEEecccCce
Confidence 37889999999999999999999999999999999943110 0112345678899999999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCC----------ceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 005277 425 YSASFSPLGDFILSSSADTTIRLWSTKLN----------ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR 494 (704)
Q Consensus 425 ~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~----------~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~ 494 (704)
.|++..+++..+++|+.||+|+.|++... .....+.||+..||.+++++....+++|+.||++++|+...
T Consensus 348 l~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~ 427 (577)
T KOG0642|consen 348 LCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTE 427 (577)
T ss_pred EEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCC
Confidence 99999999999999999999999966421 22456789999999999999999999999999999999887
Q ss_pred CceeEEeccCC--CCeeEEEEcCCC-CEEEEEECCCcEEEEeCCCCcEEEEeecC-------CCCEEEEEEecCCCEEEE
Q 005277 495 IQPLRIMAGHL--SDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECVRIFIGH-------RSMILSLAMSPDGRYMAS 564 (704)
Q Consensus 495 ~~~~~~~~~~~--~~V~~v~~~p~~-~~l~tgs~dg~I~iwd~~~~~~~~~~~~h-------~~~i~~l~~spdg~~l~s 564 (704)
..+ ..|.... +.-..+.+-... .+.++...-+.--++++..+..+..+... ...+.-+.++|.+.+.++
T Consensus 428 ~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~ 506 (577)
T KOG0642|consen 428 ESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFT 506 (577)
T ss_pred cCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEe
Confidence 766 3333211 222344443222 22222223333334455555555444321 235778899999999999
Q ss_pred EeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCC
Q 005277 565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSAD 644 (704)
Q Consensus 565 g~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~D 644 (704)
+..|+.|+++|..++.++.....|...++++++ .|+|-+|++|+.|
T Consensus 507 ~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai----------------------------------~~ng~~l~s~s~d 552 (577)
T KOG0642|consen 507 AHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAI----------------------------------DPNGPYLMSGSHD 552 (577)
T ss_pred cccCCceecccccccccchheeeccceecceee----------------------------------cCCCceEEeecCC
Confidence 999999999999999999999999999999999 9999999999999
Q ss_pred CcEEEEeCCCCccc
Q 005277 645 CTVKLWDVTTSTKV 658 (704)
Q Consensus 645 g~V~iWd~~~~~~~ 658 (704)
|.|++|.+.....+
T Consensus 553 ~sv~l~kld~k~~~ 566 (577)
T KOG0642|consen 553 GSVRLWKLDVKTCV 566 (577)
T ss_pred ceeehhhccchhee
Confidence 99999999776543
No 164
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.1e-18 Score=172.75 Aligned_cols=305 Identities=15% Similarity=0.188 Sum_probs=218.1
Q ss_pred EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCcccee-eccCCccCe
Q 005277 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYT-LYQGHSGPV 424 (704)
Q Consensus 346 ~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~V 424 (704)
-+.+|.+.|+++.||.++++||+|+.|..+++|++...-...+ .+.+. .-..|...|
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~----------------------~KPI~~~~~~H~SNI 108 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKT----------------------PKPIGVMEHPHRSNI 108 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcC----------------------CCCceeccCccccce
Confidence 4678999999999999999999999999999999875211111 11222 223466899
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeec--CCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCc-ee--E
Q 005277 425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG--HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ-PL--R 499 (704)
Q Consensus 425 ~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~--h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~-~~--~ 499 (704)
.|++|...+++|++|..+++|.+.|+++.+.+..+.. ..+.|..+..+|..+.|++.+.+|.|.+||.+... ++ .
T Consensus 109 F~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~ 188 (609)
T KOG4227|consen 109 FSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLV 188 (609)
T ss_pred EEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCcee
Confidence 9999999999999999999999999999988877753 23589999999999999999999999999997654 32 2
Q ss_pred EeccCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCcE-EEEe---ecC---CCCEEEEEEecCCCEEEEEeCCCeE
Q 005277 500 IMAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGEC-VRIF---IGH---RSMILSLAMSPDGRYMASGDEDGTI 571 (704)
Q Consensus 500 ~~~~~~~~V~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~~-~~~~---~~h---~~~i~~l~~spdg~~l~sg~~dg~I 571 (704)
...........+.|+|. ..+|++.+..+-+.+||++.... +... .+- .....++.|+|+|..+.+--....-
T Consensus 189 ~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P 268 (609)
T KOG4227|consen 189 LPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCP 268 (609)
T ss_pred eecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCC
Confidence 33445567888999995 56788899999999999985432 2111 111 2234678899999998887766677
Q ss_pred EEEeCCCCeeeeeecCCC--ceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEE
Q 005277 572 MMWDLASGRCVTPLMGHT--SCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKL 649 (704)
Q Consensus 572 ~iwdl~~~~~~~~~~~h~--~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~i 649 (704)
.+||+.+.++..--..|. +...... +..+|+-.+ .-+++|+.+-.|++
T Consensus 269 ~~~D~~S~R~~V~k~D~N~~GY~N~~T-----------------------------~KS~~F~~D-~~v~tGSD~~~i~~ 318 (609)
T KOG4227|consen 269 LYFDFISQRCFVLKSDHNPNGYCNIKT-----------------------------IKSMTFIDD-YTVATGSDHWGIHI 318 (609)
T ss_pred EEeeeecccceeEeccCCCCcceeeee-----------------------------eeeeeeecc-eeeeccCcccceEE
Confidence 788887755432222232 1111111 111222333 34999999999999
Q ss_pred EeCCCCccccccccc--------cCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277 650 WDVTTSTKVLKTEEK--------SGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 702 (704)
Q Consensus 650 Wd~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg 702 (704)
|.+........+... +....-..+..+.+|.+-+..|.|+|.+.+|++++..+
T Consensus 319 WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~ 379 (609)
T KOG4227|consen 319 WKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVEN 379 (609)
T ss_pred EecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhh
Confidence 999765433221110 11111234667899999999999999999999887543
No 165
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.82 E-value=2e-18 Score=165.31 Aligned_cols=254 Identities=22% Similarity=0.370 Sum_probs=189.5
Q ss_pred ceeeccCCccCeEEEEEcCCCCEEE-EEeCC-------CeEEEEeCCCCc---------eeEEee-cCCcCeeEEEEcCC
Q 005277 413 SYTLYQGHSGPVYSASFSPLGDFIL-SSSAD-------TTIRLWSTKLNA---------NLVCYK-GHNYPVWDVQFNPQ 474 (704)
Q Consensus 413 ~~~~~~~h~~~V~~l~~sp~~~~l~-s~s~D-------g~I~lwd~~~~~---------~~~~~~-~h~~~V~~v~~sp~ 474 (704)
....+..|.+.|..++-+|-.+.++ ++..+ ..+.||.+.... ++..+. .+-+.|.|+.|.|+
T Consensus 55 ~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn 134 (370)
T KOG1007|consen 55 LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN 134 (370)
T ss_pred hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC
Confidence 3455677889999999999766544 54332 247899876432 233333 35568999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCce-eEEec-----cCCCCeeEEEEcC--CCCEEEEEECCCcEEEEeCCCCcEEEEee-c
Q 005277 475 GHYFASSSHDRTARIWSMDRIQP-LRIMA-----GHLSDVDCVRWHI--NCNYIATGSSDKTVRLWDVSSGECVRIFI-G 545 (704)
Q Consensus 475 ~~~l~sgs~dg~i~lwd~~~~~~-~~~~~-----~~~~~V~~v~~~p--~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~ 545 (704)
+..+++-. |..|.+|+++.... +..+. ++....++-+|+| +|+.+++. .|+++..||+|+.++...+. .
T Consensus 135 s~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dA 212 (370)
T KOG1007|consen 135 SDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDA 212 (370)
T ss_pred CCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhh
Confidence 99888876 88999999987665 22222 3456678889988 78888877 58999999999887765553 6
Q ss_pred CCCCEEEEEEecCCC-EEEEEeCCCeEEEEeCCC-CeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeee
Q 005277 546 HRSMILSLAMSPDGR-YMASGDEDGTIMMWDLAS-GRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSL 623 (704)
Q Consensus 546 h~~~i~~l~~spdg~-~l~sg~~dg~I~iwdl~~-~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (704)
|...|..+.|+|+-+ +|++|+.||.|+|||.++ ..++..+.+|...|+++.|
T Consensus 213 Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRf-------------------------- 266 (370)
T KOG1007|consen 213 HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRF-------------------------- 266 (370)
T ss_pred hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEe--------------------------
Confidence 888999999999865 678999999999999986 4678999999999999999
Q ss_pred eEEeecccCC-CCCEEEEEeCCCcEEEEeCCCCccccccc--------------cccCccccccccccCCCCcCeEEEEE
Q 005277 624 TIIYFGCASC-EGSLLASGSADCTVKLWDVTTSTKVLKTE--------------EKSGTNRLRSLKTLPTKSTPVYSLQF 688 (704)
Q Consensus 624 ~~~~~~~~s~-~g~~lasgs~Dg~V~iWd~~~~~~~~~~~--------------~~~~~~~~~~l~~~~~~~~~V~~l~f 688 (704)
+| ..++|.+||.|..|.+|...+-.....+. ++...-....+.++..|...|++++|
T Consensus 267 --------n~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aW 338 (370)
T KOG1007|consen 267 --------NPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAW 338 (370)
T ss_pred --------cCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEee
Confidence 44 35688999999999999876533111110 01111222456788899999999999
Q ss_pred ccCC-cEEEEeecCC
Q 005277 689 SRRN-LLFAAGALSK 702 (704)
Q Consensus 689 s~~g-~~La~gs~dg 702 (704)
|... =++|+-++||
T Consensus 339 SsadPWiFASLSYDG 353 (370)
T KOG1007|consen 339 SSADPWIFASLSYDG 353 (370)
T ss_pred ccCCCeeEEEeccCc
Confidence 8755 4678888887
No 166
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.82 E-value=1.8e-19 Score=175.40 Aligned_cols=241 Identities=27% Similarity=0.467 Sum_probs=186.7
Q ss_pred eCCCCEEEEEEcCC----CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCe
Q 005277 349 NTHNGLNCASISQD----GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (704)
Q Consensus 349 ~~~~~V~~~~fs~d----g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 424 (704)
.|......++|+-| ..++|+|+.-|.|+|.|+.+ ......+.+|.+.|
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~----------------------------~~~~~~~~ghG~sI 138 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVS----------------------------GQCSKNYRGHGGSI 138 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecch----------------------------hhhccceeccCccc
Confidence 46667778888754 45899999999999999876 34556788999999
Q ss_pred EEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEee---cCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCc----
Q 005277 425 YSASFSPLG-DFILSSSADTTIRLWSTKLNANLVCYK---GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ---- 496 (704)
Q Consensus 425 ~~l~~sp~~-~~l~s~s~Dg~I~lwd~~~~~~~~~~~---~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~---- 496 (704)
+.+.|+|+. ++++++|.|.+||+|++++..++..+- +|...|.++.|+++|.++++++.|.++++|++...+
T Consensus 139 Neik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~ 218 (385)
T KOG1034|consen 139 NEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNK 218 (385)
T ss_pred hhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhh
Confidence 999999987 578899999999999999999988864 699999999999999999999999999999997211
Q ss_pred ---------------------eeE---EeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeC-CCCcE------------
Q 005277 497 ---------------------PLR---IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDV-SSGEC------------ 539 (704)
Q Consensus 497 ---------------------~~~---~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~-~~~~~------------ 539 (704)
+.. +-.-|...|.|+.|- |+++++-+.++.|..|-. +-++.
T Consensus 219 lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~T 296 (385)
T KOG1034|consen 219 LELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATT 296 (385)
T ss_pred hhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCcccee
Confidence 000 112467778888885 579999999999999976 21111
Q ss_pred -EEEeecCCCCEE--EEEEecCCCEEEEEeCCCeEEEEeCCCCeee--eeec--CCCceeeeeeeeeeehcccccccccc
Q 005277 540 -VRIFIGHRSMIL--SLAMSPDGRYMASGDEDGTIMMWDLASGRCV--TPLM--GHTSCVWTLAYRFLLLVTNAYLKISD 612 (704)
Q Consensus 540 -~~~~~~h~~~i~--~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~--~~~~--~h~~~V~sl~~~~~~~~~~~~~~~~~ 612 (704)
+..+.-....|. ..+|.|.+++||.|...|.|.+||++...+. .++. .....|...+|
T Consensus 297 i~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sf--------------- 361 (385)
T KOG1034|consen 297 ILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSF--------------- 361 (385)
T ss_pred eeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeee---------------
Confidence 222222233333 3456677899999999999999999987653 1221 11245666666
Q ss_pred ccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCC
Q 005277 613 KVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVT 653 (704)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~ 653 (704)
|.||.+|+....|++|.-||.-
T Consensus 362 -------------------S~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 362 -------------------SRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred -------------------cccCcEEEEEeCCCcEEEEEee
Confidence 9999999999999999999864
No 167
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.82 E-value=1.1e-18 Score=182.92 Aligned_cols=266 Identities=23% Similarity=0.352 Sum_probs=203.7
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCC
Q 005277 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL 432 (704)
Q Consensus 353 ~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 432 (704)
.|..++|-|||..|+.+. +..+.|||.+. +.....+.||...|+|++|+.|
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~nd----------------------------G~llqtLKgHKDtVycVAys~d 64 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSD----------------------------GTLLQPLKGHKDTVYCVAYAKD 64 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCC----------------------------cccccccccccceEEEEEEccC
Confidence 688999999999887774 56788999876 3466778999999999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEE
Q 005277 433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR 512 (704)
Q Consensus 433 ~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~ 512 (704)
|+.++||+.|..|.+|+-.-... ..| .|+..|.|+.|+|-.+.+++++- ...-+|..+...... . .....|.+++
T Consensus 65 GkrFASG~aDK~VI~W~~klEG~-LkY-SH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V~K-~-kss~R~~~Cs 139 (1081)
T KOG1538|consen 65 GKRFASGSADKSVIIWTSKLEGI-LKY-SHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSVSK-H-KSSSRIICCS 139 (1081)
T ss_pred CceeccCCCceeEEEecccccce-eee-ccCCeeeEeecCchHHHhhhcch-hhccccChhhhhHHh-h-hhheeEEEee
Confidence 99999999999999998763332 233 49999999999999999999986 346789876543222 1 2345688899
Q ss_pred EcCCCCEEEEEECCCcEEEEeCCCCcEEEEee--cCCCCEEEEEEecCC-----CEEEEEeCCCeEEEEeCCCCeeeeee
Q 005277 513 WHINCNYIATGSSDKTVRLWDVSSGECVRIFI--GHRSMILSLAMSPDG-----RYMASGDEDGTIMMWDLASGRCVTPL 585 (704)
Q Consensus 513 ~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~--~h~~~i~~l~~spdg-----~~l~sg~~dg~I~iwdl~~~~~~~~~ 585 (704)
|..||++++.|-.+|+|.+-+-.....++.-. |.+.+|.+++|+|.. ..+++.....++.++.+. |+.+..-
T Consensus 140 WtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~ 218 (1081)
T KOG1538|consen 140 WTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKD 218 (1081)
T ss_pred ecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeeccc
Confidence 99999999999999999998653333333222 467799999999953 356667777777777664 3333222
Q ss_pred cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccccccccc
Q 005277 586 MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKS 665 (704)
Q Consensus 586 ~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~ 665 (704)
+.-.-.-.++++ -++|.++..||.|+.+++|--+.
T Consensus 219 r~L~FdP~CisY----------------------------------f~NGEy~LiGGsdk~L~~fTR~G----------- 253 (1081)
T KOG1538|consen 219 RALNFDPCCISY----------------------------------FTNGEYILLGGSDKQLSLFTRDG----------- 253 (1081)
T ss_pred ccCCCCchhhee----------------------------------ccCCcEEEEccCCCceEEEeecC-----------
Confidence 211112234445 78999999999999999997543
Q ss_pred CccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 666 GTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 666 ~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
-.+.++...++.|..|+..|+++..+.|+-|||
T Consensus 254 -----vrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGT 286 (1081)
T KOG1538|consen 254 -----VRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGT 286 (1081)
T ss_pred -----eEEeeccccceeEEEEEEccCCceEEEEEccCe
Confidence 235667778889999999999999999999997
No 168
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.82 E-value=1.3e-16 Score=172.51 Aligned_cols=293 Identities=37% Similarity=0.621 Sum_probs=226.6
Q ss_pred eEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEEcccCCccccccccCCCCCCCCcccccCCCC
Q 005277 331 RVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFS-DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG 409 (704)
Q Consensus 331 ~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~-dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (704)
.+.+|....+......+..|...|.+++|+|++.++++++. |+.+++|++..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 187 (466)
T COG2319 135 TVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT--------------------------- 187 (466)
T ss_pred cEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC---------------------------
Confidence 55666655445566678889999999999999999999986 99999999874
Q ss_pred CccceeeccCCccCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeE-EeecCCcCeeEEEEcCCCCEEEEEeCCCeE
Q 005277 410 RKRSYTLYQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLV-CYKGHNYPVWDVQFNPQGHYFASSSHDRTA 487 (704)
Q Consensus 410 ~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~Dg~I~lwd~~~~~~~~-~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i 487 (704)
......+.+|...|.+++|+|++. .+++++.|++|++||...+.... .+.+|...+ ...|+|++.++++++.|+.+
T Consensus 188 -~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~ 265 (466)
T COG2319 188 -GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTI 265 (466)
T ss_pred -CceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcE
Confidence 234455666999999999999998 55566999999999998777777 688888775 44899999899999999999
Q ss_pred EEEECCCCce-eEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEee--cCCCCEEEEEEecCCCEEEE
Q 005277 488 RIWSMDRIQP-LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI--GHRSMILSLAMSPDGRYMAS 564 (704)
Q Consensus 488 ~lwd~~~~~~-~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~--~h~~~i~~l~~spdg~~l~s 564 (704)
++|++..... ...+.+|...|.++.|+|++..+++++.|+.+.+||..+........ .|...+..+.|.+++..++.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (466)
T COG2319 266 RLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVS 345 (466)
T ss_pred EEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEE
Confidence 9999987665 45556788999999999988899889999999999999887776665 78888999999434355665
Q ss_pred E-eCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEE-Ee
Q 005277 565 G-DEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLAS-GS 642 (704)
Q Consensus 565 g-~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~las-gs 642 (704)
+ ..|+.+.+|++...........+.. +..+.+ ++ ...++. +.
T Consensus 346 ~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----------------------------------~~-~~~~~~~~~ 389 (466)
T COG2319 346 GGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSF----------------------------------SP-DGRVVSSGS 389 (466)
T ss_pred eecCCCcEEeeecCCCceeEEecCCce-EEEEEE----------------------------------CC-CCCEEEEec
Confidence 5 6889999999988773333332222 666666 55 344444 78
Q ss_pred CCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 643 ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 643 ~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
.++.+.+|+.......... ......+....+++++..++.++.+++
T Consensus 390 ~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (466)
T COG2319 390 TDGTVRLWDLSTGSLLRNL---------------DGHTSRVTSLDFSPDGKSLASGSSDNT 435 (466)
T ss_pred CCCceEEEecccCeeeeec---------------cCCCCcEEEEEECCCCcEEEEecCCCc
Confidence 9999999999886543211 111178899999999998888666543
No 169
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.81 E-value=7.2e-19 Score=178.06 Aligned_cols=242 Identities=17% Similarity=0.247 Sum_probs=183.7
Q ss_pred eeccCCccCeEEEEEcCCCC--EEEEEeCCCeEEEEeCCCC----ceeEEeecCCcCeeEEEEcC-CCCEEEEEeCCCeE
Q 005277 415 TLYQGHSGPVYSASFSPLGD--FILSSSADTTIRLWSTKLN----ANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTA 487 (704)
Q Consensus 415 ~~~~~h~~~V~~l~~sp~~~--~l~s~s~Dg~I~lwd~~~~----~~~~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i 487 (704)
....-|.++|++++|+|..+ .+++|..-|+|-+||+.+. ..+..+..|..+|.++.|+| +...+++.|.||+|
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGti 259 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTI 259 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCcee
Confidence 34456889999999999765 7889999999999999633 23566788999999999999 56789999999999
Q ss_pred EEEECCCCceeEEecc--CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcE-EEEeecCCCCEEEEEEecC-CCEEE
Q 005277 488 RIWSMDRIQPLRIMAG--HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPD-GRYMA 563 (704)
Q Consensus 488 ~lwd~~~~~~~~~~~~--~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~-~~~~~~h~~~i~~l~~spd-g~~l~ 563 (704)
++-|+++......+.. ....+..+.|+.+...+++|..=|...+||.+++.. ...+.-|...|++++++|. ..+|+
T Consensus 260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~la 339 (498)
T KOG4328|consen 260 RLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLA 339 (498)
T ss_pred eeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhee
Confidence 9999987643333332 445567788887777788887777999999998665 6666778889999999995 46789
Q ss_pred EEeCCCeEEEEeCCCCee----eeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEE
Q 005277 564 SGDEDGTIMMWDLASGRC----VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLA 639 (704)
Q Consensus 564 sg~~dg~I~iwdl~~~~~----~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~la 639 (704)
+++.|++.+|||++.-.. +.....|...|.+..| ||.+..|+
T Consensus 340 T~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyF----------------------------------SPs~gtl~ 385 (498)
T KOG4328|consen 340 TASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYF----------------------------------SPSGGTLL 385 (498)
T ss_pred ecccCcceeeeehhhhcCCCCcceecccccceeeeeEE----------------------------------cCCCCceE
Confidence 999999999999986432 2334568899999888 99988899
Q ss_pred EEeCCCcEEEEeCC----CCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeec
Q 005277 640 SGSADCTVKLWDVT----TSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL 700 (704)
Q Consensus 640 sgs~Dg~V~iWd~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~ 700 (704)
|.+.|+.|+|||.. .......+.+.... +.--......|.|+..++++|-+
T Consensus 386 TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t----------~RwlT~fKA~W~P~~~li~vg~~ 440 (498)
T KOG4328|consen 386 TTCQDNEIRVFDSSCISAKDEPLGTIPHNNRT----------GRWLTPFKAAWDPDYNLIVVGRY 440 (498)
T ss_pred eeccCCceEEeecccccccCCccceeeccCcc----------cccccchhheeCCCccEEEEecc
Confidence 99999999999984 22221111111000 00112345688998888888864
No 170
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.81 E-value=1.7e-17 Score=159.03 Aligned_cols=292 Identities=20% Similarity=0.244 Sum_probs=210.6
Q ss_pred CCCeEEEEEeeCCCCEEEEEEcC--C-CCEEEEEeC----CCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCc
Q 005277 339 LPSVSFYTFINTHNGLNCASISQ--D-GSLVAGGFS----DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRK 411 (704)
Q Consensus 339 ~p~~~~~~~~~~~~~V~~~~fs~--d-g~~lasg~~----dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (704)
.|..+.+.-.+.+-.+.++.||. + +.+||.|+. ...|.|-.++......
T Consensus 32 ~~r~~eiy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~------------------------ 87 (364)
T KOG0290|consen 32 NPRRKEIYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGEL------------------------ 87 (364)
T ss_pred CcccceEEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCce------------------------
Confidence 34444444456677899999993 3 568888874 4567777665311110
Q ss_pred cceeeccCCccCeEEEEEcCCCC-----EEEEEeCCCeEEEEeCCCCceeE---------EeecCCcCeeEEEEcC-CCC
Q 005277 412 RSYTLYQGHSGPVYSASFSPLGD-----FILSSSADTTIRLWSTKLNANLV---------CYKGHNYPVWDVQFNP-QGH 476 (704)
Q Consensus 412 ~~~~~~~~h~~~V~~l~~sp~~~-----~l~s~s~Dg~I~lwd~~~~~~~~---------~~~~h~~~V~~v~~sp-~~~ 476 (704)
....-..|.-+++.+.|.|+.. +|+|++ | .+|+|.+....... .-..+..|++++.|+. +-+
T Consensus 88 -~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~-D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~ 164 (364)
T KOG0290|consen 88 -VEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS-D-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN 164 (364)
T ss_pred -eccCCCCCCCCccceEecCCccccCcchhhccc-C-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc
Confidence 1111146889999999999863 455444 3 79999987422111 1124678999999998 778
Q ss_pred EEEEEeCCCeEEEEECCCCce---eEEeccCCCCeeEEEEcCCC-CEEEEEECCCcEEEEeCCCCcEEEEe-ec--CCCC
Q 005277 477 YFASSSHDRTARIWSMDRIQP---LRIMAGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECVRIF-IG--HRSM 549 (704)
Q Consensus 477 ~l~sgs~dg~i~lwd~~~~~~---~~~~~~~~~~V~~v~~~p~~-~~l~tgs~dg~I~iwd~~~~~~~~~~-~~--h~~~ 549 (704)
++.++|-|-++.|||++++.. ...+-.|...|..++|...+ +.+|+.+.||+||+||+|...-...+ .. ...+
T Consensus 165 ~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~p 244 (364)
T KOG0290|consen 165 LIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTP 244 (364)
T ss_pred eeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCc
Confidence 999999999999999998633 44556799999999999754 67889999999999999976543332 22 2457
Q ss_pred EEEEEEec-CCCEEEEEeCC-CeEEEEeCCC-CeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEE
Q 005277 550 ILSLAMSP-DGRYMASGDED-GTIMMWDLAS-GRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTII 626 (704)
Q Consensus 550 i~~l~~sp-dg~~l~sg~~d-g~I~iwdl~~-~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (704)
...++|++ |-+++|+-..| ..|.|.|++. +.++..+++|.++|..++|
T Consensus 245 LlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaW----------------------------- 295 (364)
T KOG0290|consen 245 LLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAW----------------------------- 295 (364)
T ss_pred ceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEe-----------------------------
Confidence 88899998 45678775544 5799999986 4788999999999999999
Q ss_pred eecccCCC-CCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEcc-CCcEEEEeecC
Q 005277 627 YFGCASCE-GSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSR-RNLLFAAGALS 701 (704)
Q Consensus 627 ~~~~~s~~-g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~-~g~~La~gs~d 701 (704)
.|. +..|+|+|.|..+.|||+...... ....++..+. ..+.|..++|++ .+..++.+...
T Consensus 296 -----aPhS~~hictaGDD~qaliWDl~q~~~~---------~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 296 -----APHSSSHICTAGDDCQALIWDLQQMPRE---------NGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred -----cCCCCceeeecCCcceEEEEeccccccc---------CCCCchhhhh-ccceeeeeeecccCCCEEEEEecC
Confidence 444 578999999999999999875431 1123344443 677899999995 56667766543
No 171
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.81 E-value=2.7e-18 Score=164.31 Aligned_cols=255 Identities=20% Similarity=0.300 Sum_probs=194.6
Q ss_pred EEeeCCCCEEEEEEcC-CCCEEEEEeCC-------CcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeec
Q 005277 346 TFINTHNGLNCASISQ-DGSLVAGGFSD-------SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY 417 (704)
Q Consensus 346 ~~~~~~~~V~~~~fs~-dg~~lasg~~d-------g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (704)
+|..|.+.|..++-+| |.++|+++..+ -.+-||.+......... .....+..+
T Consensus 58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~-------------------~tlE~v~~L 118 (370)
T KOG1007|consen 58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNS-------------------STLECVASL 118 (370)
T ss_pred hhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcccc-------------------chhhHhhcC
Confidence 4677888999999998 56777777653 23679998753222110 011222333
Q ss_pred c-CCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-eEEee-----cCCcCeeEEEEcC--CCCEEEEEeCCCeEE
Q 005277 418 Q-GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN-LVCYK-----GHNYPVWDVQFNP--QGHYFASSSHDRTAR 488 (704)
Q Consensus 418 ~-~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~-~~~~~-----~h~~~V~~v~~sp--~~~~l~sgs~dg~i~ 488 (704)
. .+-+.|.|+.|.|++..+++-. |..|.+|++..+.. +..+. +|....++-+|+| +|+.+++. .|+++.
T Consensus 119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~ 196 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQ 196 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEE
Confidence 3 4567999999999999888776 77899999998766 22222 3566788889999 67877776 579999
Q ss_pred EEECCCCceeEEec-cCCCCeeEEEEcCCC-CEEEEEECCCcEEEEeCCC-CcEEEEeecCCCCEEEEEEecC-CCEEEE
Q 005277 489 IWSMDRIQPLRIMA-GHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSS-GECVRIFIGHRSMILSLAMSPD-GRYMAS 564 (704)
Q Consensus 489 lwd~~~~~~~~~~~-~~~~~V~~v~~~p~~-~~l~tgs~dg~I~iwd~~~-~~~~~~~~~h~~~i~~l~~spd-g~~l~s 564 (704)
.||+++......+. .|...|..+.|+|+- .+|++++.||.|++||.|. ..++..+.+|...|.++.|+|. .++|.+
T Consensus 197 ~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs 276 (370)
T KOG1007|consen 197 FWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILS 276 (370)
T ss_pred EEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEe
Confidence 99999877665554 688899999999985 4678899999999999984 5678889999999999999994 578889
Q ss_pred EeCCCeEEEEeCCCC-----------------------------eeeeeecCCCceeeeeeeeeeehccccccccccccc
Q 005277 565 GDEDGTIMMWDLASG-----------------------------RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVS 615 (704)
Q Consensus 565 g~~dg~I~iwdl~~~-----------------------------~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~ 615 (704)
|+.|..|.+|...+- ..+.++..|...|++++|.
T Consensus 277 ~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWS----------------- 339 (370)
T KOG1007|consen 277 GGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWS----------------- 339 (370)
T ss_pred cCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeec-----------------
Confidence 999999999965421 1233566788999999993
Q ss_pred cceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCC
Q 005277 616 TGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTT 654 (704)
Q Consensus 616 ~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~ 654 (704)
+.+.-++|+-+.||.|.|=.+..
T Consensus 340 ----------------sadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 340 ----------------SADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred ----------------cCCCeeEEEeccCceEEeecCCh
Confidence 66777889999999999977754
No 172
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.2e-17 Score=156.25 Aligned_cols=241 Identities=19% Similarity=0.249 Sum_probs=181.4
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCC
Q 005277 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL 432 (704)
Q Consensus 353 ~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 432 (704)
.|.+-+|+|.+++|++|..+|.|-+++++....... .......+...++|.++|+.++|.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa------------------~~~gk~~iv~eqahdgpiy~~~f~-- 71 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA------------------EPPGKLKIVPEQAHDGPIYYLAFH-- 71 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc------------------CCCCCcceeeccccCCCeeeeeee--
Confidence 356668999999999999999999999876221110 111234455668999999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCce------eE--EeecC-----CcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeE
Q 005277 433 GDFILSSSADTTIRLWSTKLNAN------LV--CYKGH-----NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR 499 (704)
Q Consensus 433 ~~~l~s~s~Dg~I~lwd~~~~~~------~~--~~~~h-----~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~ 499 (704)
..+|++|+ ||.|+-|..+.... +. ...-| -..|.++...|..+-++.++.|+.++-||+++++..+
T Consensus 72 d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r 150 (325)
T KOG0649|consen 72 DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQR 150 (325)
T ss_pred hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEE
Confidence 56677776 59999998764322 10 01112 2358899999988778888899999999999999999
Q ss_pred EeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeec---------CC-CCEEEEEEecCCCEEEEEeCCC
Q 005277 500 IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG---------HR-SMILSLAMSPDGRYMASGDEDG 569 (704)
Q Consensus 500 ~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~---------h~-~~i~~l~~spdg~~l~sg~~dg 569 (704)
.+++|.+.|.|+.-......+++|+.||++|+||.++++++.++.. |. ..|.+++. +..+|++|+. .
T Consensus 151 ~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgG-p 227 (325)
T KOG0649|consen 151 EYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGG-P 227 (325)
T ss_pred EEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCC-C
Confidence 9999999999999866666899999999999999999999987643 22 24666665 4668887765 4
Q ss_pred eEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEE
Q 005277 570 TIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKL 649 (704)
Q Consensus 570 ~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~i 649 (704)
.+.+|.+++.++...+. -...+..+.| ....++++|..+.|.-
T Consensus 228 ~lslwhLrsse~t~vfp-ipa~v~~v~F------------------------------------~~d~vl~~G~g~~v~~ 270 (325)
T KOG0649|consen 228 KLSLWHLRSSESTCVFP-IPARVHLVDF------------------------------------VDDCVLIGGEGNHVQS 270 (325)
T ss_pred ceeEEeccCCCceEEEe-cccceeEeee------------------------------------ecceEEEeccccceee
Confidence 69999999988776664 2334555555 4557888888888888
Q ss_pred EeCCC
Q 005277 650 WDVTT 654 (704)
Q Consensus 650 Wd~~~ 654 (704)
|.+..
T Consensus 271 ~~l~G 275 (325)
T KOG0649|consen 271 YTLNG 275 (325)
T ss_pred eeecc
Confidence 88754
No 173
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.80 E-value=1e-17 Score=166.73 Aligned_cols=210 Identities=25% Similarity=0.398 Sum_probs=168.0
Q ss_pred ceeeccCCccCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCC-------ceeEEeecCCcCeeEEEEcCC-CCEEEEEeC
Q 005277 413 SYTLYQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLN-------ANLVCYKGHNYPVWDVQFNPQ-GHYFASSSH 483 (704)
Q Consensus 413 ~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~Dg~I~lwd~~~~-------~~~~~~~~h~~~V~~v~~sp~-~~~l~sgs~ 483 (704)
.+-...||+++|..++|+|.+. .|+|||.|.+|.||.+-.+ ..+..+.+|...|--|+|+|. .+.|++++.
T Consensus 73 ~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~ 152 (472)
T KOG0303|consen 73 SYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGS 152 (472)
T ss_pred CCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccC
Confidence 3445679999999999999665 6789999999999998644 447788999999999999994 578899999
Q ss_pred CCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCC-CEEEEEEecCCCEE
Q 005277 484 DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS-MILSLAMSPDGRYM 562 (704)
Q Consensus 484 dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~-~i~~l~~spdg~~l 562 (704)
|.+|.+|++.+++.+..+. |...|.+++|+.+|.+|++.+.|..|||||.++++.+..-.+|.+ .-..+.|-.+|..+
T Consensus 153 Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~ 231 (472)
T KOG0303|consen 153 DNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIF 231 (472)
T ss_pred CceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCcee
Confidence 9999999999999888877 999999999999999999999999999999999999988888876 34566787889865
Q ss_pred EEEe---CCCeEEEEeCCCCee---eeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCC
Q 005277 563 ASGD---EDGTIMMWDLASGRC---VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGS 636 (704)
Q Consensus 563 ~sg~---~dg~I~iwdl~~~~~---~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 636 (704)
.+|. .+..+-+||..+-.. ...+...+ .|.---| .++.+
T Consensus 232 tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSn-Gvl~PFy----------------------------------D~dt~ 276 (472)
T KOG0303|consen 232 TTGFSRMSERQIALWDPNNLEEPIALQELDTSN-GVLLPFY----------------------------------DPDTS 276 (472)
T ss_pred eeccccccccceeccCcccccCcceeEEeccCC-ceEEeee----------------------------------cCCCC
Confidence 5554 567899999765322 22232222 2222222 77777
Q ss_pred EEE-EEeCCCcEEEEeCCCCccc
Q 005277 637 LLA-SGSADCTVKLWDVTTSTKV 658 (704)
Q Consensus 637 ~la-sgs~Dg~V~iWd~~~~~~~ 658 (704)
+++ +|-.|+.||-|.+......
T Consensus 277 ivYl~GKGD~~IRYyEit~d~P~ 299 (472)
T KOG0303|consen 277 IVYLCGKGDSSIRYFEITNEPPF 299 (472)
T ss_pred EEEEEecCCcceEEEEecCCCce
Confidence 774 5558999999999886643
No 174
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=3.4e-18 Score=167.49 Aligned_cols=280 Identities=19% Similarity=0.261 Sum_probs=196.7
Q ss_pred CEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCC--CCEEEEEeC
Q 005277 364 SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL--GDFILSSSA 441 (704)
Q Consensus 364 ~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~--~~~l~s~s~ 441 (704)
+.+|++.++|.|++||..+ ...+..+.+|...++.+.|..+ ...+.+|+.
T Consensus 41 ~~vav~lSngsv~lyd~~t----------------------------g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ss 92 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGT----------------------------GQLLEEFKGPPATTNGVRFISCDSPHGVISCSS 92 (376)
T ss_pred eeEEEEecCCeEEEEeccc----------------------------hhhhheecCCCCcccceEEecCCCCCeeEEecc
Confidence 6799999999999999875 3456677889999999999873 457889999
Q ss_pred CCeEEEEeCCCCceeEE--eecCC-cCeeEEEEcCCCCEEEEEe----CCCeEEEEECCCCce-eEEe-ccCCCCeeEEE
Q 005277 442 DTTIRLWSTKLNANLVC--YKGHN-YPVWDVQFNPQGHYFASSS----HDRTARIWSMDRIQP-LRIM-AGHLSDVDCVR 512 (704)
Q Consensus 442 Dg~I~lwd~~~~~~~~~--~~~h~-~~V~~v~~sp~~~~l~sgs----~dg~i~lwd~~~~~~-~~~~-~~~~~~V~~v~ 512 (704)
||+|++||+++...... +..+. .+..+++.+..++.+++|+ .+-.+.+||++..+. ++.+ ..|..+|++++
T Consensus 93 DG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lr 172 (376)
T KOG1188|consen 93 DGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLR 172 (376)
T ss_pred CCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEE
Confidence 99999999998766443 44454 4677777777888888885 577899999998765 5554 47999999999
Q ss_pred EcC-CCCEEEEEECCCcEEEEeCCCCc---EEEEeecCCCCEEEEEEecCC-CEEEEEeCCCeEEEEeCCCCeeeeeecC
Q 005277 513 WHI-NCNYIATGSSDKTVRLWDVSSGE---CVRIFIGHRSMILSLAMSPDG-RYMASGDEDGTIMMWDLASGRCVTPLMG 587 (704)
Q Consensus 513 ~~p-~~~~l~tgs~dg~I~iwd~~~~~---~~~~~~~h~~~i~~l~~spdg-~~l~sg~~dg~I~iwdl~~~~~~~~~~~ 587 (704)
||| +.++|++||.||-|.+||+.... .+.....|...|.++.|..++ +.|.+-+..+...+|++..+.....+..
T Consensus 173 FHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~ 252 (376)
T KOG1188|consen 173 FHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLEN 252 (376)
T ss_pred ecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccC
Confidence 999 46899999999999999997432 222233577889999999887 3588888899999999998876554432
Q ss_pred CCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeC-CCcEEEEeCCCCccccccccccC
Q 005277 588 HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSA-DCTVKLWDVTTSTKVLKTEEKSG 666 (704)
Q Consensus 588 h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~-Dg~V~iWd~~~~~~~~~~~~~~~ 666 (704)
.. +..... .......+.+ ...| ..+...++.++. -|...++-+......
T Consensus 253 ~~--~~~~d~-------------r~~~~~dY~I------~~~~-~~~~~~~~l~g~~~n~~~~~~~~~~~s~-------- 302 (376)
T KOG1188|consen 253 PD--VSADDL-------------RKEDNCDYVI------NEHS-PGDKDTCALAGTDSNKGTIFPLVDTSSG-------- 302 (376)
T ss_pred cc--chhhhH-------------Hhhhhhhhee------eccc-CCCcceEEEeccccCceeEEEeeecccc--------
Confidence 21 000000 0000000000 0000 223445555544 677777766542211
Q ss_pred ccccccccccCC-CCcCeEEEEEccCCcEEEEeecCC
Q 005277 667 TNRLRSLKTLPT-KSTPVYSLQFSRRNLLFAAGALSK 702 (704)
Q Consensus 667 ~~~~~~l~~~~~-~~~~V~~l~fs~~g~~La~gs~dg 702 (704)
.....+..+.+ |..-|.++.|...+.+|.+|+.||
T Consensus 303 -~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG 338 (376)
T KOG1188|consen 303 -SLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDG 338 (376)
T ss_pred -cccCccccccCCcHHHHHHHhhhcccceeeccCCCc
Confidence 11133445555 667788999999999999999987
No 175
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.79 E-value=1.6e-17 Score=181.22 Aligned_cols=268 Identities=20% Similarity=0.251 Sum_probs=201.7
Q ss_pred eEeecCCCCCCeEEEEEeeCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCC
Q 005277 331 RVHLSSAALPSVSFYTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG 409 (704)
Q Consensus 331 ~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~d-g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (704)
.+.+|+..-|....+ .+.....|+|+.|+|. ..++|.|+.+|.|.+||+.......
T Consensus 223 ~~~vW~~~~p~~Pe~-~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~---------------------- 279 (555)
T KOG1587|consen 223 VLLVWSLKNPNTPEL-VLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP---------------------- 279 (555)
T ss_pred eEEEEecCCCCCceE-EEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC----------------------
Confidence 467788777744444 3456789999999994 8899999999999999998643321
Q ss_pred CccceeeccCCccCeEEEEEcCCCCE--EEEEeCCCeEEEEeCCCCcee------EEee------cCCcCeeEEEEcC-C
Q 005277 410 RKRSYTLYQGHSGPVYSASFSPLGDF--ILSSSADTTIRLWSTKLNANL------VCYK------GHNYPVWDVQFNP-Q 474 (704)
Q Consensus 410 ~~~~~~~~~~h~~~V~~l~~sp~~~~--l~s~s~Dg~I~lwd~~~~~~~------~~~~------~h~~~V~~v~~sp-~ 474 (704)
..........|..+|+.+.|..+..- ++++|.||.|..|+++.-... .... .....+++++|.+ +
T Consensus 280 ~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~ 359 (555)
T KOG1587|consen 280 PSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTD 359 (555)
T ss_pred CcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCC
Confidence 01223344579999999999775544 999999999999988743321 1111 1235688999999 6
Q ss_pred CCEEEEEeCCCeEEEEECCCC--------ceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC-CCcEEEEeec
Q 005277 475 GHYFASSSHDRTARIWSMDRI--------QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS-SGECVRIFIG 545 (704)
Q Consensus 475 ~~~l~sgs~dg~i~lwd~~~~--------~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~-~~~~~~~~~~ 545 (704)
...|++|+.+|.|.--+-... +....+..|.++|.++.++|-+..++..+.|.+|+||... ...++..+..
T Consensus 360 p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~ 439 (555)
T KOG1587|consen 360 PNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDS 439 (555)
T ss_pred CceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhh
Confidence 677999999999887443221 1233556788999999999987766666669999999987 6677777778
Q ss_pred CCCCEEEEEEecCC-CEEEEEeCCCeEEEEeCCCC--eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeee
Q 005277 546 HRSMILSLAMSPDG-RYMASGDEDGTIMMWDLASG--RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYS 622 (704)
Q Consensus 546 h~~~i~~l~~spdg-~~l~sg~~dg~I~iwdl~~~--~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (704)
+...+++++|||.. ..++++..||.|.+||+... .++.+...+....+.+.|
T Consensus 440 ~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~------------------------- 494 (555)
T KOG1587|consen 440 SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRW------------------------- 494 (555)
T ss_pred ccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeec-------------------------
Confidence 88889999999964 57788889999999999654 445555445555555666
Q ss_pred eeEEeecccCCCCCEEEEEeCCCcEEEEeCCCC
Q 005277 623 LTIIYFGCASCEGSLLASGSADCTVKLWDVTTS 655 (704)
Q Consensus 623 ~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~ 655 (704)
++.|.+|++|...|++++|++...
T Consensus 495 ---------s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 495 ---------SPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ---------CCCCcEEEEecCCCcEEEEEcCch
Confidence 888999999999999999999643
No 176
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=3.9e-17 Score=178.11 Aligned_cols=291 Identities=19% Similarity=0.268 Sum_probs=215.0
Q ss_pred eCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEE
Q 005277 349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS 428 (704)
Q Consensus 349 ~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 428 (704)
.|.-.++|.++||+++++|+|..||.|.+|.--.. .......+.+.-|..+|.+++
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~------------------------~~~~~t~t~lHWH~~~V~~L~ 258 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS------------------------SDDSETCTLLHWHHDEVNSLS 258 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEecccc------------------------ccccccceEEEecccccceeE
Confidence 45555899999999999999999999999974320 122346677888999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc-----
Q 005277 429 FSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG----- 503 (704)
Q Consensus 429 ~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~----- 503 (704)
|+++|.+|+||+..|.+.+|.+.+++ ..-+..-.++|..+.++||+.+.+....|+.|.+....+......+.+
T Consensus 259 fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~ 337 (792)
T KOG1963|consen 259 FSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPT 337 (792)
T ss_pred EecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCC
Confidence 99999999999999999999999988 444455688999999999999999999999999998755443333332
Q ss_pred ------CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEee-----c------CCCCEEEEEEecCCCEEEEEe
Q 005277 504 ------HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-----G------HRSMILSLAMSPDGRYMASGD 566 (704)
Q Consensus 504 ------~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-----~------h~~~i~~l~~spdg~~l~sg~ 566 (704)
..+-.+.++++|..+.++-.+..|.|.+||+-+...+..+. . +...++.++.+..|.+++|+-
T Consensus 338 ~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E 417 (792)
T KOG1963|consen 338 PSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLE 417 (792)
T ss_pred ccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEee
Confidence 12335678899988888888899999999998877665542 1 223577888888899999863
Q ss_pred --------CC--CeEEEEeCCCC----eeeeee-cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeeccc
Q 005277 567 --------ED--GTIMMWDLASG----RCVTPL-MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCA 631 (704)
Q Consensus 567 --------~d--g~I~iwdl~~~----~~~~~~-~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (704)
.| -.+++|-.... .+...+ .+|...+....+..
T Consensus 418 ~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~-------------------------------- 465 (792)
T KOG1963|consen 418 ARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLN-------------------------------- 465 (792)
T ss_pred eeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEec--------------------------------
Confidence 23 35777865432 222222 46776665555410
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecC
Q 005277 632 SCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS 701 (704)
Q Consensus 632 s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~d 701 (704)
.+....++++|.||.++||-+.......+. .....-..+.. .|..++.+.+|+.||.+|++|..+
T Consensus 466 ~~rs~~~vta~~dg~~KiW~~~~~~n~~k~---~s~W~c~~i~s--y~k~~i~a~~fs~dGslla~s~~~ 530 (792)
T KOG1963|consen 466 PTRSVRCVTASVDGDFKIWVFTDDSNIYKK---SSNWTCKAIGS--YHKTPITALCFSQDGSLLAVSFDD 530 (792)
T ss_pred CcccceeEEeccCCeEEEEEEecccccCcC---ccceEEeeeec--cccCcccchhhcCCCcEEEEecCC
Confidence 233348999999999999999765543221 11122222333 388999999999999999988665
No 177
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.78 E-value=1e-17 Score=175.84 Aligned_cols=261 Identities=18% Similarity=0.305 Sum_probs=205.8
Q ss_pred HhccCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCccccc
Q 005277 326 EDLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII 405 (704)
Q Consensus 326 ~~~~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (704)
-...+|+.+.+.+..+ .+.++.+|.+.|+|++|+.||+.+|+|+.|..|.||+-.-.+
T Consensus 29 lAAg~rlliyD~ndG~-llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG--------------------- 86 (1081)
T KOG1538|consen 29 LAAGSRLLVYDTSDGT-LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG--------------------- 86 (1081)
T ss_pred EecCCEEEEEeCCCcc-cccccccccceEEEEEEccCCceeccCCCceeEEEecccccc---------------------
Confidence 3445667776654433 355789999999999999999999999999999999854211
Q ss_pred CCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCC
Q 005277 406 GPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR 485 (704)
Q Consensus 406 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg 485 (704)
..-..|...|.|+.|+|-...|+||+-. ..-+|+... +.+..++ ....|.+.+|..||.+|+.|-.+|
T Consensus 87 ---------~LkYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~q-K~V~K~k-ss~R~~~CsWtnDGqylalG~~nG 154 (1081)
T KOG1538|consen 87 ---------ILKYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQ-KSVSKHK-SSSRIICCSWTNDGQYLALGMFNG 154 (1081)
T ss_pred ---------eeeeccCCeeeEeecCchHHHhhhcchh-hccccChhh-hhHHhhh-hheeEEEeeecCCCcEEEEeccCc
Confidence 1223699999999999999999999875 578898773 3333333 345788999999999999999999
Q ss_pred eEEEEECCCCceeEEec--cCCCCeeEEEEcCCC-----CEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecC
Q 005277 486 TARIWSMDRIQPLRIMA--GHLSDVDCVRWHINC-----NYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD 558 (704)
Q Consensus 486 ~i~lwd~~~~~~~~~~~--~~~~~V~~v~~~p~~-----~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spd 558 (704)
+|.+-+-.....+++-. |..++|.+++|+|+. ..+++.....++..|.+ +|+.+..-..-.-...|+.+.|+
T Consensus 155 TIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r~L~FdP~CisYf~N 233 (1081)
T KOG1538|consen 155 TISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKDRALNFDPCCISYFTN 233 (1081)
T ss_pred eEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeecccccCCCCchhheeccC
Confidence 99998764444333332 577899999999963 57888888888888887 45544433334456689999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEE
Q 005277 559 GRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLL 638 (704)
Q Consensus 559 g~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l 638 (704)
|.++..||.|+.+++|- +.|-.+.++......||++.. .|+++.+
T Consensus 234 GEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~----------------------------------~PNsQ~v 278 (1081)
T KOG1538|consen 234 GEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQA----------------------------------KPNSQYV 278 (1081)
T ss_pred CcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEE----------------------------------ccCCceE
Confidence 99999999999999997 677777777778889999988 9999999
Q ss_pred EEEeCCCcEEEEeCCCCc
Q 005277 639 ASGSADCTVKLWDVTTST 656 (704)
Q Consensus 639 asgs~Dg~V~iWd~~~~~ 656 (704)
+.|+.||+|..|++...+
T Consensus 279 ~~GCqDGTiACyNl~fST 296 (1081)
T KOG1538|consen 279 VVGCQDGTIACYNLIFST 296 (1081)
T ss_pred EEEEccCeeehhhhHHhH
Confidence 999999999999986543
No 178
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.78 E-value=7.6e-18 Score=163.65 Aligned_cols=210 Identities=24% Similarity=0.404 Sum_probs=167.7
Q ss_pred CCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCcc---CeEEEEEcCCCCEEE
Q 005277 361 QDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG---PVYSASFSPLGDFIL 437 (704)
Q Consensus 361 ~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~sp~~~~l~ 437 (704)
|+..++|+.+.+.-|++||.-+++...... -..|.. .-.+++|+|||..|+
T Consensus 121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~--------------------------~ydh~de~taAhsL~Fs~DGeqlf 174 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYR--------------------------AYDHQDEYTAAHSLQFSPDGEQLF 174 (406)
T ss_pred CccceeeeccccCceeeeeccccccccchh--------------------------hhhhHHhhhhheeEEecCCCCeEe
Confidence 678899999999999999987744333211 112322 335899999999998
Q ss_pred EEeCCCeEEEEeC-CCCceeEEe-------ecCCcCeeEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCe
Q 005277 438 SSSADTTIRLWST-KLNANLVCY-------KGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDV 508 (704)
Q Consensus 438 s~s~Dg~I~lwd~-~~~~~~~~~-------~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V 508 (704)
+|- ..+|+++|+ +.|.....+ .+..+.|.+++|+| +...++.|+...++-|+.-....++..+.+|.+.|
T Consensus 175 aGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGv 253 (406)
T KOG2919|consen 175 AGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGV 253 (406)
T ss_pred ecc-cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCe
Confidence 776 468999999 444432222 13467899999999 55589999999999999999999999999999999
Q ss_pred eEEEEcCCCCEEEEEEC-CCcEEEEeCCC-CcEEEEeecCCC---CEEEEEEecCCCEEEEEeCCCeEEEEeCCC-Ceee
Q 005277 509 DCVRWHINCNYIATGSS-DKTVRLWDVSS-GECVRIFIGHRS---MILSLAMSPDGRYMASGDEDGTIMMWDLAS-GRCV 582 (704)
Q Consensus 509 ~~v~~~p~~~~l~tgs~-dg~I~iwd~~~-~~~~~~~~~h~~---~i~~l~~spdg~~l~sg~~dg~I~iwdl~~-~~~~ 582 (704)
+.++|+++|+.|++|+. |..|..||+|. +.++..+..|.+ .-.-....|+|++|++|+.||.|++||+.. +..+
T Consensus 254 ThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~ 333 (406)
T KOG2919|consen 254 THLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEV 333 (406)
T ss_pred eeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcc
Confidence 99999999999999985 67899999985 455555655544 222355678999999999999999999998 7778
Q ss_pred eeecCCCceeeeeee
Q 005277 583 TPLMGHTSCVWTLAY 597 (704)
Q Consensus 583 ~~~~~h~~~V~sl~~ 597 (704)
..+..|+.+|..+++
T Consensus 334 sv~~~~sd~vNgvsl 348 (406)
T KOG2919|consen 334 SVTGNYSDTVNGVSL 348 (406)
T ss_pred cccccccccccceec
Confidence 888899999999988
No 179
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.78 E-value=5.4e-18 Score=160.52 Aligned_cols=249 Identities=17% Similarity=0.278 Sum_probs=189.1
Q ss_pred CCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeecc-
Q 005277 340 PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ- 418 (704)
Q Consensus 340 p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 418 (704)
|.-++|.+.+|...|+|+.|-.+++ |.+|..-|.|.+|++.+.. ....+.
T Consensus 3 pPdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r----------------------------~~~~~r~ 53 (323)
T KOG0322|consen 3 PPDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTER----------------------------DLPLIRL 53 (323)
T ss_pred CCCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCc----------------------------cchhhhh
Confidence 4455777889999999999988776 8899999999999998732 222333
Q ss_pred CCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE--------------E-------------ee-----------
Q 005277 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV--------------C-------------YK----------- 460 (704)
Q Consensus 419 ~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~--------------~-------------~~----------- 460 (704)
.|...|+.+.--|+ ..|.+-+.|+.+.+|++.-+..+. . +.
T Consensus 54 ~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D 132 (323)
T KOG0322|consen 54 FGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQD 132 (323)
T ss_pred hccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhc
Confidence 46677888887776 457777888888888876421110 0 00
Q ss_pred ---------------cCCcCeeEEEEcC-CCC--EEEEEeCCCeEEEEECCCCc----------eeEEeccCCCCeeEEE
Q 005277 461 ---------------GHNYPVWDVQFNP-QGH--YFASSSHDRTARIWSMDRIQ----------PLRIMAGHLSDVDCVR 512 (704)
Q Consensus 461 ---------------~h~~~V~~v~~sp-~~~--~l~sgs~dg~i~lwd~~~~~----------~~~~~~~~~~~V~~v~ 512 (704)
+..+.+.+..|.- .+. +++.|-.+|.+.+||+.++. .+.....|..+|.++.
T Consensus 133 ~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsld 212 (323)
T KOG0322|consen 133 GGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLD 212 (323)
T ss_pred cCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeee
Confidence 1123444554322 233 35677799999999998863 3334457889999999
Q ss_pred EcCCCCEEEEEECCCcEEEEeCCC--CcE-EE-EeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCC
Q 005277 513 WHINCNYIATGSSDKTVRLWDVSS--GEC-VR-IFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588 (704)
Q Consensus 513 ~~p~~~~l~tgs~dg~I~iwd~~~--~~~-~~-~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h 588 (704)
|.+..+.=++|+.+..+.+|++.. +.+ ++ ...-.+-.|..+.+-||++.+|++|.||.|+||..++.+++..+.-|
T Consensus 213 yas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyH 292 (323)
T KOG0322|consen 213 YASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYH 292 (323)
T ss_pred echhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhh
Confidence 998777778888888999998863 322 11 12223346888999999999999999999999999999999999999
Q ss_pred CceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeC
Q 005277 589 TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDV 652 (704)
Q Consensus 589 ~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~ 652 (704)
.+.|.+++| +|+..++|++|.|++|.+|++
T Consensus 293 sagvn~vAf----------------------------------spd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 293 SAGVNAVAF----------------------------------SPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hcceeEEEe----------------------------------CCCCchhhhccCCceEEeeec
Confidence 999999999 999999999999999999986
No 180
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.77 E-value=7.2e-19 Score=188.87 Aligned_cols=265 Identities=24% Similarity=0.400 Sum_probs=207.4
Q ss_pred EeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEE
Q 005277 347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (704)
Q Consensus 347 ~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 426 (704)
+.+|.+.|.|+.|...|.++++|+.|..|+||++.+ ..+.....||++.|+.
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et----------------------------~~~lAs~rGhs~ditd 237 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMET----------------------------ARCLASCRGHSGDITD 237 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccc----------------------------hhhhccCCCCccccch
Confidence 568999999999999999999999999999999765 3455667899999999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe----c
Q 005277 427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM----A 502 (704)
Q Consensus 427 l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~----~ 502 (704)
++.+.++.+++++|.|..|++|.+..+..+..+.+|++.|++|+|+|-. +.+.||++++||.+- .++... .
T Consensus 238 lavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~-~~~~y~prp~~ 312 (1113)
T KOG0644|consen 238 LAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARL-EPRIYVPRPLK 312 (1113)
T ss_pred hccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccc-cccccCCCCCC
Confidence 9999999999999999999999999999999999999999999999965 678999999999981 111111 1
Q ss_pred -cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecC-CCEEEEEeCCCeEEEEeCCCCe
Q 005277 503 -GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD-GRYMASGDEDGTIMMWDLASGR 580 (704)
Q Consensus 503 -~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spd-g~~l~sg~~dg~I~iwdl~~~~ 580 (704)
....-+.++.|..++.-++||+.|+.-+.|.+..-. .+...+.-+.++.+ ..+.+++-.+-.+++|++.+|.
T Consensus 313 ~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~ 386 (1113)
T KOG0644|consen 313 FTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQ 386 (1113)
T ss_pred cccccceeeeeccccccccccccCCcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccch
Confidence 123457778888899999999999999888764211 12222222222222 2466677788899999999999
Q ss_pred eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCC-CEEEEEeCCCcEEEEeCCCCcccc
Q 005277 581 CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEG-SLLASGSADCTVKLWDVTTSTKVL 659 (704)
Q Consensus 581 ~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g-~~lasgs~Dg~V~iWd~~~~~~~~ 659 (704)
.+..+.+|...++.+.+ +|-. .+..+++.||+..|||+-.+.++.
T Consensus 387 l~H~l~ghsd~~yvLd~----------------------------------Hpfn~ri~msag~dgst~iwdi~eg~pik 432 (1113)
T KOG0644|consen 387 LLHNLMGHSDEVYVLDV----------------------------------HPFNPRIAMSAGYDGSTIIWDIWEGIPIK 432 (1113)
T ss_pred hhhhhcccccceeeeee----------------------------------cCCCcHhhhhccCCCceEeeecccCCcce
Confidence 99999999999999998 6654 455789999999999998876543
Q ss_pred ccccccCccccccccccCCCCcCeEEEEEccCCcEEEEee
Q 005277 660 KTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 699 (704)
Q Consensus 660 ~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs 699 (704)
.+ . .....+..-.||++|.-++...
T Consensus 433 ~y-------------~--~gh~kl~d~kFSqdgts~~lsd 457 (1113)
T KOG0644|consen 433 HY-------------F--IGHGKLVDGKFSQDGTSIALSD 457 (1113)
T ss_pred ee-------------e--cccceeeccccCCCCceEecCC
Confidence 22 1 2244566678888877666543
No 181
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.76 E-value=5.1e-17 Score=161.81 Aligned_cols=211 Identities=18% Similarity=0.310 Sum_probs=170.5
Q ss_pred EeeCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277 347 FINTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (704)
Q Consensus 347 ~~~~~~~V~~~~fs~-dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (704)
+.+|...|..++|+| +...||+|+.|.+|.||.+........ ....+..+.||...|-
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~---------------------ltepvv~L~gH~rrVg 135 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD---------------------LTEPVVELYGHQRRVG 135 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC---------------------cccceEEEeecceeEE
Confidence 578999999999999 467899999999999999876432221 1245678999999999
Q ss_pred EEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccC
Q 005277 426 SASFSPLG-DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH 504 (704)
Q Consensus 426 ~l~~sp~~-~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~ 504 (704)
-++|+|.. +.|+|++.|.+|.+|++.++..+..+. |...|+++.|+.+|.+|++.+.|+.|||||.++++.+..-.+|
T Consensus 136 ~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~h 214 (472)
T KOG0303|consen 136 LVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAH 214 (472)
T ss_pred EEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccc
Confidence 99999976 467899999999999999999999888 9999999999999999999999999999999999998887777
Q ss_pred CCC-eeEEEEcCCCCEEEEEE---CCCcEEEEeCCCCcE---EEEeecCCCCEEEEEEecCCCEEEE-EeCCCeEEEEeC
Q 005277 505 LSD-VDCVRWHINCNYIATGS---SDKTVRLWDVSSGEC---VRIFIGHRSMILSLAMSPDGRYMAS-GDEDGTIMMWDL 576 (704)
Q Consensus 505 ~~~-V~~v~~~p~~~~l~tgs---~dg~I~iwd~~~~~~---~~~~~~h~~~i~~l~~spdg~~l~s-g~~dg~I~iwdl 576 (704)
.+. -..+.|-.++.++.||- ++..+-+||..+-.. ...+ ..++.|.---|.||...++. |-.|+.|+.|.+
T Consensus 215 eG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~el-DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEi 293 (472)
T KOG0303|consen 215 EGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQEL-DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEI 293 (472)
T ss_pred cCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEe-ccCCceEEeeecCCCCEEEEEecCCcceEEEEe
Confidence 653 44566778888665553 578899999765332 2222 33456666678888877765 558999999998
Q ss_pred CCCe
Q 005277 577 ASGR 580 (704)
Q Consensus 577 ~~~~ 580 (704)
....
T Consensus 294 t~d~ 297 (472)
T KOG0303|consen 294 TNEP 297 (472)
T ss_pred cCCC
Confidence 7654
No 182
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.75 E-value=1.4e-16 Score=155.07 Aligned_cols=227 Identities=18% Similarity=0.245 Sum_probs=181.5
Q ss_pred EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (704)
Q Consensus 346 ~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (704)
.++--..+|+|.+|++|++.+|++..+..|.||...... .......+..|...|+
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~-------------------------~w~~~htls~Hd~~vt 59 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD-------------------------LWEPAHTLSEHDKIVT 59 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCC-------------------------CceeceehhhhCccee
Confidence 344456789999999999999999999999999976521 1345577888999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCC---CceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCcee----
Q 005277 426 SASFSPLGDFILSSSADTTIRLWSTKL---NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL---- 498 (704)
Q Consensus 426 ~l~~sp~~~~l~s~s~Dg~I~lwd~~~---~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~---- 498 (704)
+++|+|..+.|++|+.|..-++|.... .+....+..++..+++|.|+|.++.||+|+..+.|.||-.+...--
T Consensus 60 gvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsK 139 (361)
T KOG1523|consen 60 GVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSK 139 (361)
T ss_pred EEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhh
Confidence 999999999999999999999999843 3455566779999999999999999999999999999988764322
Q ss_pred EEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC-----C-------------CcEEEEeecCCCCEEEEEEecCCC
Q 005277 499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS-----S-------------GECVRIFIGHRSMILSLAMSPDGR 560 (704)
Q Consensus 499 ~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~-----~-------------~~~~~~~~~h~~~i~~l~~spdg~ 560 (704)
.+-..+.+.|.++.|||++-++++|+.|+.+|++..- . |..+..+....+.+..+.|+|+|.
T Consensus 140 hikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~ 219 (361)
T KOG1523|consen 140 HIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN 219 (361)
T ss_pred hhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC
Confidence 2234567889999999999999999999999999641 1 223334445667899999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCe-eeeeecCCCceeeeeee
Q 005277 561 YMASGDEDGTIMMWDLASGR-CVTPLMGHTSCVWTLAY 597 (704)
Q Consensus 561 ~l~sg~~dg~I~iwdl~~~~-~~~~~~~h~~~V~sl~~ 597 (704)
.|+-.+.|+.+.+-|..... .+.....-.-+..++.|
T Consensus 220 ~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ 257 (361)
T KOG1523|consen 220 RLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSW 257 (361)
T ss_pred EeeEecCCCceEEeecCCCchhccchhhccCCceeeEe
Confidence 99999999999999977654 33333333356666666
No 183
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=1.8e-16 Score=174.53 Aligned_cols=282 Identities=21% Similarity=0.273 Sum_probs=197.7
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcC-
Q 005277 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP- 431 (704)
Q Consensus 353 ~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp- 431 (704)
.-..+.|+|-...++++...-.|+|||.......... ..-......|+.+.+-.
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F-------------------------~n~~~~~t~Vs~l~liNe 1120 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGF-------------------------DNGAFPDTRVSDLELINE 1120 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccc-------------------------cCCCCCCCccceeeeecc
Confidence 4567888998889999988889999999863221100 00011235688888764
Q ss_pred -CCCEEEEEeCCCeEEEEeCCC-----CceeEEeec-------CCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCcee
Q 005277 432 -LGDFILSSSADTTIRLWSTKL-----NANLVCYKG-------HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL 498 (704)
Q Consensus 432 -~~~~l~s~s~Dg~I~lwd~~~-----~~~~~~~~~-------h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~ 498 (704)
|..++++|+.||.||||+--. .+.+..+.+ -.+.=.-+.|.....+++++|.-+.|+|||..+...+
T Consensus 1121 ~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~ 1200 (1387)
T KOG1517|consen 1121 QDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVV 1200 (1387)
T ss_pred cchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeE
Confidence 335788999999999997321 122222221 1111134678776666666666899999999987776
Q ss_pred EEec-cCCCCeeEEEEc-CCCCEEEEEECCCcEEEEeCCCC---cEEEEeecCCCC--EEEEEEecCCCE-EEEEeCCCe
Q 005277 499 RIMA-GHLSDVDCVRWH-INCNYIATGSSDKTVRLWDVSSG---ECVRIFIGHRSM--ILSLAMSPDGRY-MASGDEDGT 570 (704)
Q Consensus 499 ~~~~-~~~~~V~~v~~~-p~~~~l~tgs~dg~I~iwd~~~~---~~~~~~~~h~~~--i~~l~~spdg~~-l~sg~~dg~ 570 (704)
..+. +....|+++.-+ +.|+.|++|..||.|++||.|.. ..+...+.|+.. |..+.+.+.|-- |++|+.||.
T Consensus 1201 ~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~ 1280 (1387)
T KOG1517|consen 1201 ADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD 1280 (1387)
T ss_pred eecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCe
Confidence 6554 344556666544 35799999999999999999854 357778889887 999999997754 999999999
Q ss_pred EEEEeCCCCeeeee--ecCCC--c-eeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCC
Q 005277 571 IMMWDLASGRCVTP--LMGHT--S-CVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADC 645 (704)
Q Consensus 571 I~iwdl~~~~~~~~--~~~h~--~-~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg 645 (704)
|++||++....... +..|. + .++++.. +++..++|+|+. +
T Consensus 1281 I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~V----------------------------------H~hapiiAsGs~-q 1325 (1387)
T KOG1517|consen 1281 IQLLDLRMSSKETFLTIVAHWEYGSALTALTV----------------------------------HEHAPIIASGSA-Q 1325 (1387)
T ss_pred EEEEecccCcccccceeeeccccCccceeeee----------------------------------ccCCCeeeecCc-c
Confidence 99999998533222 22232 2 4677766 888999999999 9
Q ss_pred cEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 646 TVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 646 ~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
.|+||++....... .... -..+....+++.|++|+|.-.+||+|+.|.+
T Consensus 1326 ~ikIy~~~G~~l~~-~k~n--------~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~ 1374 (1387)
T KOG1517|consen 1326 LIKIYSLSGEQLNI-IKYN--------PGFMGQRIGSVSCLAFHPHRLLLAAGSADST 1374 (1387)
T ss_pred eEEEEecChhhhcc-cccC--------cccccCcCCCcceeeecchhHhhhhccCCce
Confidence 99999987644211 1110 1122334567899999999999999988764
No 184
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.74 E-value=8e-17 Score=165.71 Aligned_cols=204 Identities=19% Similarity=0.303 Sum_probs=166.6
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEE
Q 005277 433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR 512 (704)
Q Consensus 433 ~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~ 512 (704)
...++.++.||.+.+.+-. ++.-..+..|.+.|.+-.|+|+|.-+++++.||.|++|.-.. -....+.....+|.|++
T Consensus 75 ~d~~~i~s~DGkf~il~k~-~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG-MLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKS-ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG-MLRSTVVQNEESIRCAR 152 (737)
T ss_pred cceEEEEcCCceEEEeccc-chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc-hHHHHHhhcCceeEEEE
Confidence 3568888999999998765 666677788999999999999999999999999999998533 22233445667899999
Q ss_pred EcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCcee
Q 005277 513 WHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCV 592 (704)
Q Consensus 513 ~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V 592 (704)
|.|+++-++.+ ..+.+.|=.+.....+-..+.|.+-|.++.|+|..+.+++||+|-..+||| ..|+.+..-..|.-+|
T Consensus 153 W~p~S~~vl~c-~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD-~~G~~Lf~S~~~ey~I 230 (737)
T KOG1524|consen 153 WAPNSNSIVFC-QGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWD-AQGANLFTSAAEEYAI 230 (737)
T ss_pred ECCCCCceEEe-cCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeec-ccCcccccCChhccce
Confidence 99998777665 345677777776666667889999999999999999999999999999999 5678888888999999
Q ss_pred eeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCcccccc
Q 005277 593 WTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRS 672 (704)
Q Consensus 593 ~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~ 672 (704)
++++| .|+ ..++.||.+ ++|+ .+
T Consensus 231 TSva~----------------------------------npd-~~~~v~S~n-t~R~---~~------------------ 253 (737)
T KOG1524|consen 231 TSVAF----------------------------------NPE-KDYLLWSYN-TARF---SS------------------ 253 (737)
T ss_pred eeeee----------------------------------ccc-cceeeeeee-eeee---cC------------------
Confidence 99999 888 666666643 4441 11
Q ss_pred ccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277 673 LKTLPTKSTPVYSLQFSRRNLLFAAGALSK 702 (704)
Q Consensus 673 l~~~~~~~~~V~~l~fs~~g~~La~gs~dg 702 (704)
...+.|..++||+||.-+++|+..|
T Consensus 254 -----p~~GSifnlsWS~DGTQ~a~gt~~G 278 (737)
T KOG1524|consen 254 -----PRVGSIFNLSWSADGTQATCGTSTG 278 (737)
T ss_pred -----CCccceEEEEEcCCCceeeccccCc
Confidence 2356799999999999999998876
No 185
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.74 E-value=1.2e-16 Score=160.08 Aligned_cols=265 Identities=21% Similarity=0.285 Sum_probs=191.5
Q ss_pred EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (704)
Q Consensus 346 ~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (704)
.+..|+..|+++.|+|+|.+||+|+.+|.|.+|........ ..+. ... ...........+.+|...|+
T Consensus 60 ~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~--------~~d~--e~~--~~ke~w~v~k~lr~h~~diy 127 (434)
T KOG1009|consen 60 SLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF--------DADT--EAD--LNKEKWVVKKVLRGHRDDIY 127 (434)
T ss_pred cccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc--------cccc--hhh--hCccceEEEEEecccccchh
Confidence 35678889999999999999999999999999986531000 0000 000 00112345567889999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec---
Q 005277 426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA--- 502 (704)
Q Consensus 426 ~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~--- 502 (704)
.++|+|++.++++++.|.++++||+..|.....+..|...|..++|.|-++++++-+.|+..+.+.+...+.+....
T Consensus 128 dL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~ 207 (434)
T KOG1009|consen 128 DLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDI 207 (434)
T ss_pred hhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeE
Confidence 99999999999999999999999999999999999999999999999999999999999977777665332221110
Q ss_pred -------c---------CC----CCeeEEEEcCCCCEEEEEE----CCC-----cEEEEeCCC-CcEEEEeecCCCCEEE
Q 005277 503 -------G---------HL----SDVDCVRWHINCNYIATGS----SDK-----TVRLWDVSS-GECVRIFIGHRSMILS 552 (704)
Q Consensus 503 -------~---------~~----~~V~~v~~~p~~~~l~tgs----~dg-----~I~iwd~~~-~~~~~~~~~h~~~i~~ 552 (704)
. |. .-...++|+|+|..+++.+ ..+ +.++++-.. .++...+.....+...
T Consensus 208 m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~la 287 (434)
T KOG1009|consen 208 MPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALA 287 (434)
T ss_pred eeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEE
Confidence 0 11 1134578999999998854 122 234444321 2333444444555555
Q ss_pred EEEec------------------CCCEEEEEeCCCeEEEEeCCCCeeeeeec-CCCceeeeeeeeeeehccccccccccc
Q 005277 553 LAMSP------------------DGRYMASGDEDGTIMMWDLASGRCVTPLM-GHTSCVWTLAYRFLLLVTNAYLKISDK 613 (704)
Q Consensus 553 l~~sp------------------dg~~l~sg~~dg~I~iwdl~~~~~~~~~~-~h~~~V~sl~~~~~~~~~~~~~~~~~~ 613 (704)
+.|+| .+-.++.++. ..|.+||..+..++.... -|-..++.++|
T Consensus 288 vr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~~P~~~v~nihy~~iTDiaw---------------- 350 (434)
T KOG1009|consen 288 VRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQTLEPLAVVDNIHYSAITDIAW---------------- 350 (434)
T ss_pred EEeeeeEEEeccccccccccccccceEEEEeec-ceEEEeccccccceEEEeeeeeeeecceee----------------
Confidence 66555 2223455554 579999999888777664 47789999999
Q ss_pred cccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcc
Q 005277 614 VSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTK 657 (704)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~ 657 (704)
+++|..++..|.||-..+--++..+.
T Consensus 351 ------------------s~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 351 ------------------SDDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred ------------------cCCCcEEEEeccCCceEEEEEcchhc
Confidence 99999999999999888877766543
No 186
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.74 E-value=2.6e-16 Score=171.82 Aligned_cols=237 Identities=16% Similarity=0.221 Sum_probs=181.2
Q ss_pred CccCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCce--eEE----eecCCcCeeEEEEcCCC--CEEEEEeCCCeEEEE
Q 005277 420 HSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNAN--LVC----YKGHNYPVWDVQFNPQG--HYFASSSHDRTARIW 490 (704)
Q Consensus 420 h~~~V~~l~~sp~~~-~l~s~s~Dg~I~lwd~~~~~~--~~~----~~~h~~~V~~v~~sp~~--~~l~sgs~dg~i~lw 490 (704)
-..+|.++.|+|... +++.|+.+|.|.+||++.+.. ... ...|..+|+.+.|..+. .-|++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 357899999999654 677889999999999987655 222 23588999999998754 449999999999999
Q ss_pred ECCCCce-eE-----Eec------cCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCC---CC-----cEEEEeecCCCC
Q 005277 491 SMDRIQP-LR-----IMA------GHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVS---SG-----ECVRIFIGHRSM 549 (704)
Q Consensus 491 d~~~~~~-~~-----~~~------~~~~~V~~v~~~p-~~~~l~tgs~dg~I~iwd~~---~~-----~~~~~~~~h~~~ 549 (704)
+++.... .. ... .....+++++|.| +.+.+++|+.+|.|.--+-. .+ +.+..+..|.++
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 9875332 11 111 1234688999997 46778999999998874332 22 223356678899
Q ss_pred EEEEEEecCCCEEEEEeCCCeEEEEeCC-CCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEee
Q 005277 550 ILSLAMSPDGRYMASGDEDGTIMMWDLA-SGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYF 628 (704)
Q Consensus 550 i~~l~~spdg~~l~sg~~dg~I~iwdl~-~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (704)
|+++.++|-+..++..+.|.+++||... ...++..+..+...|++++|
T Consensus 401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaW------------------------------- 449 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAW------------------------------- 449 (555)
T ss_pred eEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEE-------------------------------
Confidence 9999999987766655559999999988 67788888888888999999
Q ss_pred cccCCCC-CEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 629 GCASCEG-SLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 629 ~~~s~~g-~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
||-. .+++++..||.|.|||+..... .++.+.+......+.+.|++.|++|++|...|+
T Consensus 450 ---SptrpavF~~~d~~G~l~iWDLl~~~~-------------~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~ 509 (555)
T KOG1587|consen 450 ---SPTRPAVFATVDGDGNLDIWDLLQDDE-------------EPVLSQKVCSPALTRVRWSPNGKLLAVGDANGT 509 (555)
T ss_pred ---cCcCceEEEEEcCCCceehhhhhcccc-------------CCcccccccccccceeecCCCCcEEEEecCCCc
Confidence 7754 5788999999999999987543 334445445667788899999999999999986
No 187
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.74 E-value=6.9e-15 Score=156.21 Aligned_cols=248 Identities=14% Similarity=0.232 Sum_probs=165.0
Q ss_pred EEeeCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCe
Q 005277 346 TFINTHNGLNCASISQDGSLVAGGF-SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (704)
Q Consensus 346 ~~~~~~~~V~~~~fs~dg~~lasg~-~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 424 (704)
....+.+....++++|++++|++++ .++.|.+|+++..+... .... ....+..
T Consensus 29 ~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~-------------------------~~~~-~~~~~~p 82 (330)
T PRK11028 29 QVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALT-------------------------FAAE-SPLPGSP 82 (330)
T ss_pred eEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceE-------------------------Eeee-ecCCCCc
Confidence 3344556788899999999887764 58889999986311100 0000 0122345
Q ss_pred EEEEEcCCCCEEEEEe-CCCeEEEEeCCCCc----eeEEeecCCcCeeEEEEcCCCCEEEEEe-CCCeEEEEECCCCcee
Q 005277 425 YSASFSPLGDFILSSS-ADTTIRLWSTKLNA----NLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWSMDRIQPL 498 (704)
Q Consensus 425 ~~l~~sp~~~~l~s~s-~Dg~I~lwd~~~~~----~~~~~~~h~~~V~~v~~sp~~~~l~sgs-~dg~i~lwd~~~~~~~ 498 (704)
..++|+|++++|++++ .++.|.+|+++... .+..+. +.....+++++|+++++++++ .++.|.+||+++...+
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l 161 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHL 161 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcc
Confidence 6899999999988776 48899999997432 222222 233467789999999886554 6699999999763322
Q ss_pred EE-----e-ccCCCCeeEEEEcCCCCEEEEEEC-CCcEEEEeCCC--Cc--EEEEeecC------CCCEEEEEEecCCCE
Q 005277 499 RI-----M-AGHLSDVDCVRWHINCNYIATGSS-DKTVRLWDVSS--GE--CVRIFIGH------RSMILSLAMSPDGRY 561 (704)
Q Consensus 499 ~~-----~-~~~~~~V~~v~~~p~~~~l~tgs~-dg~I~iwd~~~--~~--~~~~~~~h------~~~i~~l~~spdg~~ 561 (704)
.. . .........+.|+|+++++++++. +++|.+||+.. +. .+..+..+ ......+.++|+|++
T Consensus 162 ~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ 241 (330)
T PRK11028 162 VAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRH 241 (330)
T ss_pred cccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCE
Confidence 11 1 112344678999999999988876 89999999973 33 23333211 122346899999999
Q ss_pred EEEEe-CCCeEEEEeCCCCeeeeeecCCC---ceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCE
Q 005277 562 MASGD-EDGTIMMWDLASGRCVTPLMGHT---SCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSL 637 (704)
Q Consensus 562 l~sg~-~dg~I~iwdl~~~~~~~~~~~h~---~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 637 (704)
++++. .++.|.+|++........+.++. .....+.+ +++|++
T Consensus 242 lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~----------------------------------~~dg~~ 287 (330)
T PRK11028 242 LYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNI----------------------------------DHSGKY 287 (330)
T ss_pred EEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEE----------------------------------CCCCCE
Confidence 99885 47899999986532211222221 12234445 999999
Q ss_pred EEEEeC-CCcEEEEeCCC
Q 005277 638 LASGSA-DCTVKLWDVTT 654 (704)
Q Consensus 638 lasgs~-Dg~V~iWd~~~ 654 (704)
|++++. +++|.+|++..
T Consensus 288 l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 288 LIAAGQKSHHISVYEIDG 305 (330)
T ss_pred EEEEEccCCcEEEEEEcC
Confidence 987775 89999998864
No 188
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=2.8e-16 Score=172.37 Aligned_cols=220 Identities=19% Similarity=0.239 Sum_probs=155.8
Q ss_pred eeccCCccCeEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCce--eEEeecCCcCeeEEEEcCCCCEEEEEe-CCCeEE
Q 005277 415 TLYQGHSGPVYSASFSPLGDFILSSSAD---TTIRLWSTKLNAN--LVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTAR 488 (704)
Q Consensus 415 ~~~~~h~~~V~~l~~sp~~~~l~s~s~D---g~I~lwd~~~~~~--~~~~~~h~~~V~~v~~sp~~~~l~sgs-~dg~i~ 488 (704)
..+..|...+.+.+|+|||+.|+.++.+ ..|++||+.++.. +..+.+| ...++|+|+|+.++.++ .+|.+.
T Consensus 197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~ 273 (429)
T PRK01742 197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLN 273 (429)
T ss_pred eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEE
Confidence 3455677889999999999999877643 4799999987754 3333333 44689999999888765 678766
Q ss_pred EE--ECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCC-CcEEEEeecCCCCEEEEEEecCCCEEEE
Q 005277 489 IW--SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSS-GECVRIFIGHRSMILSLAMSPDGRYMAS 564 (704)
Q Consensus 489 lw--d~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~~-~~~~~~~~~h~~~i~~l~~spdg~~l~s 564 (704)
|| |+.++. ...+..+...+....|+|+|+.|+.++ .+|...||++.. +.....+ .+.. .+..|+|||++|+.
T Consensus 274 Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~ 349 (429)
T PRK01742 274 IYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVM 349 (429)
T ss_pred EEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEE
Confidence 55 665554 444556677788999999999877655 578888887653 2222333 3443 46789999999988
Q ss_pred EeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCC
Q 005277 565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSAD 644 (704)
Q Consensus 565 g~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~D 644 (704)
++.++ +.+||+.+++.......+ ...+..| +|+|++|+.++.+
T Consensus 350 ~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~----------------------------------sPdG~~i~~~s~~ 392 (429)
T PRK01742 350 INGDN-VVKQDLTSGSTEVLSSTF--LDESPSI----------------------------------SPNGIMIIYSSTQ 392 (429)
T ss_pred EcCCC-EEEEECCCCCeEEecCCC--CCCCceE----------------------------------CCCCCEEEEEEcC
Confidence 87765 566999888654322222 2345667 9999999999999
Q ss_pred CcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccC
Q 005277 645 CTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRR 691 (704)
Q Consensus 645 g~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~ 691 (704)
|.+.+|.+..... ..+..+..+.+.+...+|+|.
T Consensus 393 g~~~~l~~~~~~G-------------~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 393 GLGKVLQLVSADG-------------RFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCceEEEEEECCC-------------CceEEccCCCCCCCCcccCCC
Confidence 9999888643111 224455667777888999985
No 189
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.72 E-value=4.5e-16 Score=149.40 Aligned_cols=251 Identities=18% Similarity=0.292 Sum_probs=179.0
Q ss_pred HHhccCeEeecCCCCCCeEEE--EEeeCCCCEEEEEEcCCC-----CEEEEEeCCCcEEEEEcccCCccccccccCCCCC
Q 005277 325 LEDLRNRVHLSSAALPSVSFY--TFINTHNGLNCASISQDG-----SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGEND 397 (704)
Q Consensus 325 ~~~~~~~~~l~~~~~p~~~~~--~~~~~~~~V~~~~fs~dg-----~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~ 397 (704)
.++.++++.+-.....+-... .-+.|.-+++.+-|.|+. .+||+. +-++|+|.+...........
T Consensus 68 ~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~------ 139 (364)
T KOG0290|consen 68 IEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQS------ 139 (364)
T ss_pred ccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehhh------
Confidence 455666665543322222111 125788899999999985 366665 46899999874211110000
Q ss_pred CCCcccccCCCCCccceeeccCCccCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCce---eEEeecCCcCeeEEEEcC
Q 005277 398 TTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP-LGDFILSSSADTTIRLWSTKLNAN---LVCYKGHNYPVWDVQFNP 473 (704)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~Dg~I~lwd~~~~~~---~~~~~~h~~~V~~v~~sp 473 (704)
.. .......+.+++++..|+. +-+++.++|-|.|..|||++++.. ...+-.|...|.+|+|..
T Consensus 140 ------~L-------~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~ 206 (364)
T KOG0290|consen 140 ------VL-------NNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLK 206 (364)
T ss_pred ------hh-------ccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEecc
Confidence 00 0011234678999999987 446788999999999999998733 556778999999999998
Q ss_pred CC-CEEEEEeCCCeEEEEECCCCceeEEecc---CCCCeeEEEEcC-CCCEEEEEECC-CcEEEEeCCC-CcEEEEeecC
Q 005277 474 QG-HYFASSSHDRTARIWSMDRIQPLRIMAG---HLSDVDCVRWHI-NCNYIATGSSD-KTVRLWDVSS-GECVRIFIGH 546 (704)
Q Consensus 474 ~~-~~l~sgs~dg~i~lwd~~~~~~~~~~~~---~~~~V~~v~~~p-~~~~l~tgs~d-g~I~iwd~~~-~~~~~~~~~h 546 (704)
.+ ..||+.|.||.+|+||++......++.. ...+...++|++ +.+++|+-..| ..|.|.|+|. ..++..+.+|
T Consensus 207 ~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H 286 (364)
T KOG0290|consen 207 GSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNH 286 (364)
T ss_pred CccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcC
Confidence 54 5799999999999999998665444432 245678889986 56788885544 5699999985 5678889999
Q ss_pred CCCEEEEEEecC-CCEEEEEeCCCeEEEEeCCCCee------eeeecCCCceeeeeee
Q 005277 547 RSMILSLAMSPD-GRYMASGDEDGTIMMWDLASGRC------VTPLMGHTSCVWTLAY 597 (704)
Q Consensus 547 ~~~i~~l~~spd-g~~l~sg~~dg~I~iwdl~~~~~------~~~~~~h~~~V~sl~~ 597 (704)
.+.|+.++|.|. +..|+++|+|..+.|||+.+.-. +..+. ..+.|..+.|
T Consensus 287 ~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~W 343 (364)
T KOG0290|consen 287 QASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQW 343 (364)
T ss_pred cccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeee
Confidence 999999999995 56899999999999999975321 11222 4578889999
No 190
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=1.2e-16 Score=166.26 Aligned_cols=232 Identities=23% Similarity=0.416 Sum_probs=177.6
Q ss_pred CCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeec
Q 005277 338 ALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY 417 (704)
Q Consensus 338 ~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (704)
..-....++|.+|.++|.|++.++++..+.+|+-||+|+.|++..... ..+ ..........+
T Consensus 331 ~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~d---------p~d---------s~dp~vl~~~l 392 (577)
T KOG0642|consen 331 EKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQD---------PDD---------SYDPSVLSGTL 392 (577)
T ss_pred ccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCC---------ccc---------ccCcchhccce
Confidence 344567899999999999999999999999999999999999863110 000 00112344568
Q ss_pred cCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee---cCCcCeeEEEEcCCC-CEEEEEeCCCeEEEEECC
Q 005277 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK---GHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMD 493 (704)
Q Consensus 418 ~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~---~h~~~V~~v~~sp~~-~~l~sgs~dg~i~lwd~~ 493 (704)
.||.+.|..+++|+....|++|+.||++++|+...... .++. .|..| .++.+-... ...++...-+.-.+.+++
T Consensus 393 ~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~P-lsvd~~ss~~a~~~~s~~~~~~~~~~~e 470 (577)
T KOG0642|consen 393 LGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYP-LSVDRTSSRPAHSLASFRFGYTSIDDME 470 (577)
T ss_pred eccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCc-ceEeeccchhHhhhhhcccccccchhhh
Confidence 89999999999999999999999999999999876655 3332 23333 355554322 223333333444455555
Q ss_pred CCceeEEeccC-------CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEe
Q 005277 494 RIQPLRIMAGH-------LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD 566 (704)
Q Consensus 494 ~~~~~~~~~~~-------~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~ 566 (704)
....+..+... ...+.-+.+||+..+.+++..|+.|+++|..+++.+.....|...++++++.|+|-+|++|+
T Consensus 471 v~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s 550 (577)
T KOG0642|consen 471 VVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGS 550 (577)
T ss_pred hhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeec
Confidence 55555555421 24577889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCCCeeeeeecCCC
Q 005277 567 EDGTIMMWDLASGRCVTPLMGHT 589 (704)
Q Consensus 567 ~dg~I~iwdl~~~~~~~~~~~h~ 589 (704)
.||.+++|.+....++.....|.
T Consensus 551 ~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 551 HDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred CCceeehhhccchheeecccccc
Confidence 99999999998888877776665
No 191
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.70 E-value=8.4e-16 Score=149.69 Aligned_cols=230 Identities=21% Similarity=0.303 Sum_probs=179.9
Q ss_pred CccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc---eeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECC-C-
Q 005277 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA---NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD-R- 494 (704)
Q Consensus 420 h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~---~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~-~- 494 (704)
-..+|+|.+|++|+..++.+.....|.||.....+ ...+++.|...|+.|+|+|..+.|++|+.|+..++|... .
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 34789999999999999999999999999987554 678889999999999999999999999999999999983 3
Q ss_pred -CceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEE----EEeecCCCCEEEEEEecCCCEEEEEeCCC
Q 005277 495 -IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECV----RIFIGHRSMILSLAMSPDGRYMASGDEDG 569 (704)
Q Consensus 495 -~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~----~~~~~h~~~i~~l~~spdg~~l~sg~~dg 569 (704)
.++...+..+....+||.|+|+++.||+|+.-..|.+|-+.....- +.-+.+...|+++.|+|++-+|++|+.|+
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~ 168 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDG 168 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCc
Confidence 3455666678999999999999999999999999999987654332 12235677899999999999999999999
Q ss_pred eEEEEeCCC------------------CeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeeccc
Q 005277 570 TIMMWDLAS------------------GRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCA 631 (704)
Q Consensus 570 ~I~iwdl~~------------------~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (704)
..+++..-- |.++..+....+.+..+.|
T Consensus 169 k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~f---------------------------------- 214 (361)
T KOG1523|consen 169 KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLF---------------------------------- 214 (361)
T ss_pred ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEe----------------------------------
Confidence 999996421 1222233333455556666
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEE
Q 005277 632 SCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAA 697 (704)
Q Consensus 632 s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~ 697 (704)
+|+|..|+-.+.|++|.+=|...+.. .+.......-|..++.|-.+...+++
T Consensus 215 s~sG~~lawv~Hds~v~~~da~~p~~--------------~v~~~~~~~lP~ls~~~ise~~vv~a 266 (361)
T KOG1523|consen 215 SPSGNRLAWVGHDSTVSFVDAAGPSE--------------RVQSVATAQLPLLSVSWISENSVVAA 266 (361)
T ss_pred CCCCCEeeEecCCCceEEeecCCCch--------------hccchhhccCCceeeEeecCCceeec
Confidence 99999999999999999999877642 12223333356667777666554443
No 192
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=2.4e-16 Score=159.07 Aligned_cols=195 Identities=25% Similarity=0.370 Sum_probs=156.3
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCC
Q 005277 355 NCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGD 434 (704)
Q Consensus 355 ~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~ 434 (704)
.+++|+.+|..|++|+.||++|||++..+ ........|.+.|.++.|+||++
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~----------------------------~t~l~e~~~~~eV~DL~FS~dgk 199 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM----------------------------LTILEEIAHHAEVKDLDFSPDGK 199 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc----------------------------hhhhhhHhhcCccccceeCCCCc
Confidence 78999999999999999999999998752 23344567999999999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCceeEEee--cCCcCeeEEEEcCCC-----CEEEEEeCCCeEEEEECCCCc-----eeEEec
Q 005277 435 FILSSSADTTIRLWSTKLNANLVCYK--GHNYPVWDVQFNPQG-----HYFASSSHDRTARIWSMDRIQ-----PLRIMA 502 (704)
Q Consensus 435 ~l~s~s~Dg~I~lwd~~~~~~~~~~~--~h~~~V~~v~~sp~~-----~~l~sgs~dg~i~lwd~~~~~-----~~~~~~ 502 (704)
+|++-+.| ..+||+++++..+.... ........+.|+.++ ..++.....+.|+.|++.... +.+...
T Consensus 200 ~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~ 278 (398)
T KOG0771|consen 200 FLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI 278 (398)
T ss_pred EEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh
Confidence 99999999 89999999997665554 234456678888776 334444556677777664322 222222
Q ss_pred cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEee-cCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 005277 503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578 (704)
Q Consensus 503 ~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~ 578 (704)
.....|.+++.+++|++++.|+.||.|-|++..+-+++..++ .|...|+.+.|+||.+++++.+.|..+.+..+.-
T Consensus 279 ~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 279 KRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred hccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 344579999999999999999999999999999888776654 7999999999999999999999999998887754
No 193
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=1.7e-15 Score=166.15 Aligned_cols=216 Identities=19% Similarity=0.205 Sum_probs=156.8
Q ss_pred EEeeCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCcc
Q 005277 346 TFINTHNGLNCASISQDGSLVAGGFSD---SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG 422 (704)
Q Consensus 346 ~~~~~~~~V~~~~fs~dg~~lasg~~d---g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 422 (704)
.+..+...+.+.+|||||+.||.++.+ ..|.+||+.+.. ......+.+|
T Consensus 198 ~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~--------------------------~~~l~~~~g~-- 249 (429)
T PRK01742 198 IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGA--------------------------RKVVASFRGH-- 249 (429)
T ss_pred EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCc--------------------------eEEEecCCCc--
Confidence 355677789999999999999987654 469999986521 1122223333
Q ss_pred CeEEEEEcCCCCEEEEE-eCCCeEEEE--eCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEe-CCCeEEEEECCCC-ce
Q 005277 423 PVYSASFSPLGDFILSS-SADTTIRLW--STKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWSMDRI-QP 497 (704)
Q Consensus 423 ~V~~l~~sp~~~~l~s~-s~Dg~I~lw--d~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs-~dg~i~lwd~~~~-~~ 497 (704)
..+++|+|||+.|+.+ +.+|.+.|| |+.++. ...+..+...+....|+|+|+.++.++ .+|...||+++.. ..
T Consensus 250 -~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~ 327 (429)
T PRK01742 250 -NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG 327 (429)
T ss_pred -cCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 3468999999988865 468876665 555544 455666777788999999999877655 5788888887542 22
Q ss_pred eEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeC-
Q 005277 498 LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL- 576 (704)
Q Consensus 498 ~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl- 576 (704)
...+ .+.. .+..|+|+|++|++++.++ +.+||+.+++.......+ ...++.|+|||++|++++.+|.+.+|++
T Consensus 328 ~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 328 ASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred eEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 2333 3333 4678999999999887765 666999988765433222 3456789999999999999998888876
Q ss_pred -CCCeeeeeecCCCceeeeeee
Q 005277 577 -ASGRCVTPLMGHTSCVWTLAY 597 (704)
Q Consensus 577 -~~~~~~~~~~~h~~~V~sl~~ 597 (704)
.+|+.+..+.+|.+.+...+|
T Consensus 402 ~~~G~~~~~l~~~~g~~~~p~w 423 (429)
T PRK01742 402 SADGRFKARLPGSDGQVKFPAW 423 (429)
T ss_pred ECCCCceEEccCCCCCCCCccc
Confidence 367888888888888888888
No 194
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.70 E-value=2.3e-14 Score=152.16 Aligned_cols=261 Identities=14% Similarity=0.214 Sum_probs=169.1
Q ss_pred EEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEe-CCCe
Q 005277 366 VAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSS-ADTT 444 (704)
Q Consensus 366 lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s-~Dg~ 444 (704)
.++...++.|.+|++...+. ......+. +.+....++++|++++|++++ .++.
T Consensus 5 y~~~~~~~~I~~~~~~~~g~-------------------------l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~ 58 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGA-------------------------LTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFR 58 (330)
T ss_pred EEEcCCCCCEEEEEECCCCc-------------------------eeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCc
Confidence 34446789999999863111 11122222 335567889999999887654 5788
Q ss_pred EEEEeCCC-Cce--eEEeecCCcCeeEEEEcCCCCEEEEEe-CCCeEEEEECCCC----ceeEEeccCCCCeeEEEEcCC
Q 005277 445 IRLWSTKL-NAN--LVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWSMDRI----QPLRIMAGHLSDVDCVRWHIN 516 (704)
Q Consensus 445 I~lwd~~~-~~~--~~~~~~h~~~V~~v~~sp~~~~l~sgs-~dg~i~lwd~~~~----~~~~~~~~~~~~V~~v~~~p~ 516 (704)
|.+|+++. +.. +.... .......++|+|+++++++++ .++.+.+|++++. ..+..+. +.....+++++|+
T Consensus 59 i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~ 136 (330)
T PRK11028 59 VLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPD 136 (330)
T ss_pred EEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCC
Confidence 99999973 322 12222 233567899999999888876 4899999999742 2233332 3345677899999
Q ss_pred CCEEEEEE-CCCcEEEEeCCCCcEEEE-----ee-cCCCCEEEEEEecCCCEEEEEeC-CCeEEEEeCCC--Ce--eeee
Q 005277 517 CNYIATGS-SDKTVRLWDVSSGECVRI-----FI-GHRSMILSLAMSPDGRYMASGDE-DGTIMMWDLAS--GR--CVTP 584 (704)
Q Consensus 517 ~~~l~tgs-~dg~I~iwd~~~~~~~~~-----~~-~h~~~i~~l~~spdg~~l~sg~~-dg~I~iwdl~~--~~--~~~~ 584 (704)
++++++++ .++.|.+||+.+...+.. .. ........++|+|+|++++++.. ++.|.+||+.. ++ .+..
T Consensus 137 g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~ 216 (330)
T PRK11028 137 NRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQT 216 (330)
T ss_pred CCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEE
Confidence 99987655 569999999976332210 11 12344678999999999988876 89999999973 22 2332
Q ss_pred ecCCCc----e--eeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEe-CCCcEEEEeCCCCcc
Q 005277 585 LMGHTS----C--VWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGS-ADCTVKLWDVTTSTK 657 (704)
Q Consensus 585 ~~~h~~----~--V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs-~Dg~V~iWd~~~~~~ 657 (704)
+..+.. + ...+.+ +|++++++++. .+++|.+|++.....
T Consensus 217 ~~~~p~~~~~~~~~~~i~~----------------------------------~pdg~~lyv~~~~~~~I~v~~i~~~~~ 262 (330)
T PRK11028 217 LDMMPADFSDTRWAADIHI----------------------------------TPDGRHLYACDRTASLISVFSVSEDGS 262 (330)
T ss_pred EecCCCcCCCCccceeEEE----------------------------------CCCCCEEEEecCCCCeEEEEEEeCCCC
Confidence 221110 0 112333 89999998885 478999999976432
Q ss_pred ccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeec
Q 005277 658 VLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL 700 (704)
Q Consensus 658 ~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~ 700 (704)
.. ..+...+.. .....+.|+|+|++|+++..
T Consensus 263 ~~-----------~~~~~~~~~-~~p~~~~~~~dg~~l~va~~ 293 (330)
T PRK11028 263 VL-----------SFEGHQPTE-TQPRGFNIDHSGKYLIAAGQ 293 (330)
T ss_pred eE-----------EEeEEEecc-ccCCceEECCCCCEEEEEEc
Confidence 11 112222222 23457899999999988765
No 195
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.70 E-value=1.5e-14 Score=143.67 Aligned_cols=235 Identities=18% Similarity=0.284 Sum_probs=179.5
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCC
Q 005277 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL 432 (704)
Q Consensus 353 ~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 432 (704)
.+..+.|+.|...|..|+.||+ ++|+...... . .....-...|.-+-|+
T Consensus 7 ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k---------------------------~-~~~~~~~~~IvEmLFS-- 55 (391)
T KOG2110|consen 7 TINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEK---------------------------C-FSKDTEGVSIVEMLFS-- 55 (391)
T ss_pred ceeeeeeccceeEEEccCCCce-eEEecCchHH---------------------------h-hcccCCCeEEEEeecc--
Confidence 4667779999999999999996 5787654211 0 0000111234455566
Q ss_pred CCEEEEEeCC--CeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc---CCCC
Q 005277 433 GDFILSSSAD--TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG---HLSD 507 (704)
Q Consensus 433 ~~~l~s~s~D--g~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~---~~~~ 507 (704)
..+++..+.+ ..+++.++..+..+..+. ...+|.+|.++ .+.++++-.+ .|+|||+++.+.+..+.. +...
T Consensus 56 SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmN--r~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~g 131 (391)
T KOG2110|consen 56 SSLVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMN--RKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKG 131 (391)
T ss_pred cceeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEc--cceEEEEEcc-cEEEEecccceeehhhhccCCCccc
Confidence 4555555444 348899988777776665 45689899996 4456666554 499999999988877653 4445
Q ss_pred eeEEEEcCCCCEEEEEE--CCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCe-EEEEeCCCCeeeee
Q 005277 508 VDCVRWHINCNYIATGS--SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT-IMMWDLASGRCVTP 584 (704)
Q Consensus 508 V~~v~~~p~~~~l~tgs--~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~-I~iwdl~~~~~~~~ 584 (704)
+.++++++.+.|++.-+ ..|.|.+||+.+-+.+..+..|.+.+-+++|+++|.+||++++.|+ |+|+.+.+|+.+..
T Consensus 132 l~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~e 211 (391)
T KOG2110|consen 132 LCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYE 211 (391)
T ss_pred eEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeee
Confidence 66666667777998743 4689999999999999999999999999999999999999999986 79999999999999
Q ss_pred ecCCC--ceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCc
Q 005277 585 LMGHT--SCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTST 656 (704)
Q Consensus 585 ~~~h~--~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~ 656 (704)
++--. ..|++++| ++++.+|++.|..++|+||.+....
T Consensus 212 FRRG~~~~~IySL~F----------------------------------s~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 212 FRRGTYPVSIYSLSF----------------------------------SPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred eeCCceeeEEEEEEE----------------------------------CCCCCeEEEecCCCeEEEEEecccc
Confidence 86433 56778888 9999999999999999999998654
No 196
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=1.6e-15 Score=142.17 Aligned_cols=205 Identities=19% Similarity=0.343 Sum_probs=153.8
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC----------CceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEE
Q 005277 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKL----------NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS 491 (704)
Q Consensus 422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~----------~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd 491 (704)
..|.+-+|+|.+++|+.|+.+|+|.+..+.+ ...+...++|.++|..++|. ..++++|+ ||.|+-|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 3567778999999999999999999998763 23456678999999999997 55666665 59999998
Q ss_pred CCCCce-------------eEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecC
Q 005277 492 MDRIQP-------------LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD 558 (704)
Q Consensus 492 ~~~~~~-------------~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spd 558 (704)
.+.... .+.-...-..|+++...|..+-+++++.|+.++-||+.+|+..+.+++|++.|.++.--..
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 754221 1110112246889999998888888889999999999999999999999999999998555
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeeeeeecCCCcee-eeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCE
Q 005277 559 GRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCV-WTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSL 637 (704)
Q Consensus 559 g~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V-~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 637 (704)
...+.+|++||++++||+++++.+..+.....+- ..-.|. -.+.|...+..+
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g---------------------------~wigala~~edW 220 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWG---------------------------KWIGALAVNEDW 220 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccC---------------------------ceeEEEeccCce
Confidence 5568899999999999999999988875432110 000010 001122446678
Q ss_pred EEEEeCCCcEEEEeCCCCcc
Q 005277 638 LASGSADCTVKLWDVTTSTK 657 (704)
Q Consensus 638 lasgs~Dg~V~iWd~~~~~~ 657 (704)
+++|+. -.+.+|++...+.
T Consensus 221 lvCGgG-p~lslwhLrsse~ 239 (325)
T KOG0649|consen 221 LVCGGG-PKLSLWHLRSSES 239 (325)
T ss_pred EEecCC-CceeEEeccCCCc
Confidence 888875 4799999998764
No 197
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.69 E-value=7.9e-17 Score=163.54 Aligned_cols=271 Identities=19% Similarity=0.231 Sum_probs=212.1
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCC
Q 005277 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL 432 (704)
Q Consensus 353 ~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 432 (704)
+-..+.++.+|+.|+.|+.-|.|-.+|+.++.... -..-...|.++.|..+
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~-----------------------------Ei~v~Etv~Dv~~LHn 181 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHF-----------------------------EINVMETVRDVTFLHN 181 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeee-----------------------------eeehhhhhhhhhhhcc
Confidence 45678899999999999999999999988632211 1123357889999988
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEE
Q 005277 433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR 512 (704)
Q Consensus 433 ~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~ 512 (704)
.++++++- ...+.|||-. |..+.+++.|. .|..+.|.|..-+|++++..|.++.-|+.+++.+..+....+.+..++
T Consensus 182 eq~~AVAQ-K~y~yvYD~~-GtElHClk~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~ 258 (545)
T KOG1272|consen 182 EQFFAVAQ-KKYVYVYDNN-GTELHCLKRHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMK 258 (545)
T ss_pred hHHHHhhh-hceEEEecCC-CcEEeehhhcC-chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhh
Confidence 88877765 5689999976 88888888664 789999999999999999999999999999999999888888999999
Q ss_pred EcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCcee
Q 005277 513 WHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCV 592 (704)
Q Consensus 513 ~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V 592 (704)
-+|-...+-+|...|+|.+|......++..+..|.++|.++++.++|+|++|.|.|..++|||+++...+.++.. .-+.
T Consensus 259 qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a 337 (545)
T KOG1272|consen 259 QNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPA 337 (545)
T ss_pred cCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCc
Confidence 999989999999999999999999888888889999999999999999999999999999999998876655543 2334
Q ss_pred eeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCcccccc
Q 005277 593 WTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRS 672 (704)
Q Consensus 593 ~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~ 672 (704)
..+++ |..| +||.| ....|.||.=...... . . ..
T Consensus 338 ~~ls~----------------------------------Sqkg-lLA~~-~G~~v~iw~d~~~~s~-------~-~--~~ 371 (545)
T KOG1272|consen 338 SNLSL----------------------------------SQKG-LLALS-YGDHVQIWKDALKGSG-------H-G--ET 371 (545)
T ss_pred ccccc----------------------------------cccc-ceeee-cCCeeeeehhhhcCCC-------C-C--Cc
Confidence 44444 4444 44444 4458999963322110 0 0 11
Q ss_pred ccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277 673 LKTLPTKSTPVYSLQFSRRNLLFAAGALSK 702 (704)
Q Consensus 673 l~~~~~~~~~V~~l~fs~~g~~La~gs~dg 702 (704)
.+--....++|..|.|.|-..+|..|-..|
T Consensus 372 pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 372 PYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred chhhhccCcccccceeccHHHeeeccccCC
Confidence 111112245899999999988888876554
No 198
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.68 E-value=5.4e-16 Score=147.07 Aligned_cols=240 Identities=19% Similarity=0.271 Sum_probs=179.4
Q ss_pred ceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee-cCCcCeeEEEEcCCCCEEEEEeCCCeEEEEE
Q 005277 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK-GHNYPVWDVQFNPQGHYFASSSHDRTARIWS 491 (704)
Q Consensus 413 ~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~-~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd 491 (704)
....+.+|.+.|+++.|-.+++ |++|..-|.|++|++.+......++ .|...|+.+.--|+ ..+.+-+.|+.+.+|+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWT 83 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEE
Confidence 3455669999999999987665 8999999999999999998888888 56788999998887 4578888999999999
Q ss_pred CCCCceeEE---------------------------e--------------------------ccCCCCeeEEEEcC-CC
Q 005277 492 MDRIQPLRI---------------------------M--------------------------AGHLSDVDCVRWHI-NC 517 (704)
Q Consensus 492 ~~~~~~~~~---------------------------~--------------------------~~~~~~V~~v~~~p-~~ 517 (704)
+.....+.. + .+..+.+.|..|.. .+
T Consensus 84 ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~ 163 (323)
T KOG0322|consen 84 IAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACG 163 (323)
T ss_pred ccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccccc
Confidence 864211100 0 01123344555432 22
Q ss_pred --CEEEEEECCCcEEEEeCCCCcE----------EEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCC--eee-
Q 005277 518 --NYIATGSSDKTVRLWDVSSGEC----------VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG--RCV- 582 (704)
Q Consensus 518 --~~l~tgs~dg~I~iwd~~~~~~----------~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~--~~~- 582 (704)
-++++|..+|.|.+||+.++.. +.....|..+|.++.+.+.-..=++|+.+..+..|++... .+.
T Consensus 164 s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~ 243 (323)
T KOG0322|consen 164 STFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQI 243 (323)
T ss_pred ceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccc
Confidence 2456788999999999998733 3334578999999999886555578888888999988643 111
Q ss_pred -eeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccccc
Q 005277 583 -TPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKT 661 (704)
Q Consensus 583 -~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~ 661 (704)
..+.-..-.|..+.. -||++++||+|.||.||||+.++..
T Consensus 244 ~~e~~lknpGv~gvrI----------------------------------RpD~KIlATAGWD~RiRVyswrtl~----- 284 (323)
T KOG0322|consen 244 RKEITLKNPGVSGVRI----------------------------------RPDGKILATAGWDHRIRVYSWRTLN----- 284 (323)
T ss_pred cceEEecCCCccceEE----------------------------------ccCCcEEeecccCCcEEEEEeccCC-----
Confidence 111111223444444 8999999999999999999998864
Q ss_pred ccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 662 EEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 662 ~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
++..+..|...|.+|+|+|+..++|+|+.|+.
T Consensus 285 ----------pLAVLkyHsagvn~vAfspd~~lmAaaskD~r 316 (323)
T KOG0322|consen 285 ----------PLAVLKYHSAGVNAVAFSPDCELMAAASKDAR 316 (323)
T ss_pred ----------chhhhhhhhcceeEEEeCCCCchhhhccCCce
Confidence 47788889999999999999999999999863
No 199
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=4.6e-16 Score=160.55 Aligned_cols=237 Identities=21% Similarity=0.263 Sum_probs=172.5
Q ss_pred eeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEe-ecCCcCeeEEEEcC--CCCEEEEEeCCCeEEEE
Q 005277 414 YTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY-KGHNYPVWDVQFNP--QGHYFASSSHDRTARIW 490 (704)
Q Consensus 414 ~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~-~~h~~~V~~v~~sp--~~~~l~sgs~dg~i~lw 490 (704)
...+.||+|.|+|+.|+.+|.+|++||.|-.+.|||.-..+.+..+ .+|...|.++.|-| +...+++|..|..|+++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 3558899999999999999999999999999999999888887776 48999999999999 56789999999999999
Q ss_pred ECCC----------CceeEEeccCCCCeeEEEEcCCC-CEEEEEECCCcEEEEeCCCCcEE----------EEeecCCCC
Q 005277 491 SMDR----------IQPLRIMAGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECV----------RIFIGHRSM 549 (704)
Q Consensus 491 d~~~----------~~~~~~~~~~~~~V~~v~~~p~~-~~l~tgs~dg~I~iwd~~~~~~~----------~~~~~h~~~ 549 (704)
|++. ..+.+.+..|...|..++-.|++ +.+.+++.||+|+-+|++..... ..+...--.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie 202 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE 202 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence 9984 34566777899999999999988 88999999999999999863211 111122235
Q ss_pred EEEEEEecC-CCEEEEEeCCCeEEEEeCCCCeeeeeecC---CC----ceeeeeeeeeeehccccccccccccccceeee
Q 005277 550 ILSLAMSPD-GRYMASGDEDGTIMMWDLASGRCVTPLMG---HT----SCVWTLAYRFLLLVTNAYLKISDKVSTGFLFY 621 (704)
Q Consensus 550 i~~l~~spd-g~~l~sg~~dg~I~iwdl~~~~~~~~~~~---h~----~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (704)
..|+.++|. ..+|++|+.|-..++||.+.. +..+.. |. ....++.+ .+.+.. ....+....
T Consensus 203 lk~ltisp~rp~~laVGgsdpfarLYD~Rr~--lks~~s~~~~~~~pp~~~~cv~y-----f~p~hl----kn~~gn~~~ 271 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGGSDPFARLYDRRRV--LKSFRSDGTMNTCPPKDCRCVRY-----FSPGHL----KNSQGNLDR 271 (758)
T ss_pred eeeeeecCCCCceEEecCCCchhhhhhhhhh--ccCCCCCccccCCCCcccchhhe-----ecCccc----cCccccccc
Confidence 678999994 578999999999999996422 111111 11 11112221 000111 122333334
Q ss_pred eeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccccc
Q 005277 622 SLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKT 661 (704)
Q Consensus 622 ~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~ 661 (704)
....+....++|+|.-|.+.-..-.|+++|+..++....+
T Consensus 272 ~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 272 YITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred ceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 4445556666999987666555568999999987765443
No 200
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.67 E-value=3.3e-15 Score=154.30 Aligned_cols=172 Identities=19% Similarity=0.296 Sum_probs=137.4
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCceeEEeec----CCcCeeEEEEcC-CCCEEEEEeCCCeEEEEECCC----------
Q 005277 430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKG----HNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDR---------- 494 (704)
Q Consensus 430 sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~----h~~~V~~v~~sp-~~~~l~sgs~dg~i~lwd~~~---------- 494 (704)
.|.+--|+.|-.-|.|.+.|.........+.. ....|+++.|-| +...|+.+-.+|.+.++|...
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence 34555677888888899988765322221211 246899999999 556777888999999997641
Q ss_pred ------------------CceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEe
Q 005277 495 ------------------IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMS 556 (704)
Q Consensus 495 ------------------~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~s 556 (704)
..|+..+.-..+.|..++|+|||++||+.+.||.+||||..+.+.+..++.--+...|++||
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWS 341 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWS 341 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEc
Confidence 11222222334578889999999999999999999999999988888777777889999999
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeee
Q 005277 557 PDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLL 601 (704)
Q Consensus 557 pdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~ 601 (704)
|||+||++|++|..|.||.+..++.+..-++|.+.|..++|.+..
T Consensus 342 PDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpyt 386 (636)
T KOG2394|consen 342 PDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYT 386 (636)
T ss_pred CCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecccc
Confidence 999999999999999999999999999999999999999997543
No 201
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=1.1e-15 Score=154.39 Aligned_cols=197 Identities=26% Similarity=0.352 Sum_probs=160.0
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc-
Q 005277 425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG- 503 (704)
Q Consensus 425 ~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~- 503 (704)
.+++|+++|..|++++.||++|+|++.+...+.....|...|.++.|+|||+.+++-+.| ..+||+.+++.++.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 789999999999999999999999988888888888899999999999999999999999 999999999977665542
Q ss_pred -CCCCeeEEEEcCCC---CEE--EEEECCCcEEEEeCCCCcE-----EEEeecCCCCEEEEEEecCCCEEEEEeCCCeEE
Q 005277 504 -HLSDVDCVRWHINC---NYI--ATGSSDKTVRLWDVSSGEC-----VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM 572 (704)
Q Consensus 504 -~~~~V~~v~~~p~~---~~l--~tgs~dg~I~iwd~~~~~~-----~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~ 572 (704)
.......+.|..++ .+. +....-+.|+.||+...+- .+........|++++.++||++++.|+.||.|.
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 22346677887665 332 2333456777777643211 111222334799999999999999999999999
Q ss_pred EEeCCCCeeeeee-cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEe
Q 005277 573 MWDLASGRCVTPL-MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWD 651 (704)
Q Consensus 573 iwdl~~~~~~~~~-~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd 651 (704)
|++..+.+.+... +.|...|+.+.| +|+.+++++.+.|....|..
T Consensus 307 i~~~~~lq~~~~vk~aH~~~VT~ltF----------------------------------~Pdsr~~~svSs~~~~~v~~ 352 (398)
T KOG0771|consen 307 IYDAKSLQRLQYVKEAHLGFVTGLTF----------------------------------SPDSRYLASVSSDNEAAVTK 352 (398)
T ss_pred EEEeceeeeeEeehhhheeeeeeEEE----------------------------------cCCcCcccccccCCceeEEE
Confidence 9999988877766 579999999999 99999999999999999988
Q ss_pred CCCCc
Q 005277 652 VTTST 656 (704)
Q Consensus 652 ~~~~~ 656 (704)
+.-..
T Consensus 353 l~vd~ 357 (398)
T KOG0771|consen 353 LAVDK 357 (398)
T ss_pred Eeecc
Confidence 87643
No 202
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.67 E-value=1.7e-15 Score=156.06 Aligned_cols=211 Identities=16% Similarity=0.242 Sum_probs=167.4
Q ss_pred CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCC
Q 005277 363 GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSAD 442 (704)
Q Consensus 363 g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D 442 (704)
...++.+++||.+.|.+-.. +.......|.+.|.+-.|+|||.-|++++.|
T Consensus 75 ~d~~~i~s~DGkf~il~k~~-----------------------------rVE~sv~AH~~A~~~gRW~~dGtgLlt~GED 125 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKSA-----------------------------RVERSISAHAAAISSGRWSPDGAGLLTAGED 125 (737)
T ss_pred cceEEEEcCCceEEEecccc-----------------------------hhhhhhhhhhhhhhhcccCCCCceeeeecCC
Confidence 45688888999998887432 3445567899999999999999999999999
Q ss_pred CeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEE
Q 005277 443 TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIAT 522 (704)
Q Consensus 443 g~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~t 522 (704)
|.|++|+-. |-...++-....+|.|++|.|+.+-++.+- .+.+.+=.+.-...+-....|.+-|.|+.|+|..+++++
T Consensus 126 G~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~s 203 (737)
T KOG1524|consen 126 GVIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIAS 203 (737)
T ss_pred ceEEEEecc-chHHHHHhhcCceeEEEEECCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceee
Confidence 999999965 333333334567899999999877666553 367777777666666777889999999999999999999
Q ss_pred EECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeeh
Q 005277 523 GSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLL 602 (704)
Q Consensus 523 gs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~ 602 (704)
|+.|-..++||- .|..+..-..|..+|++++|.|+ ..++.++.. ++++ -....+.|..++|
T Consensus 204 gGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R~-----------~~p~~GSifnlsW----- 264 (737)
T KOG1524|consen 204 GGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TARF-----------SSPRVGSIFNLSW----- 264 (737)
T ss_pred cCCceeEEeecc-cCcccccCChhccceeeeeeccc-cceeeeeee-eeee-----------cCCCccceEEEEE-----
Confidence 999999999996 56777777789999999999999 555555532 3441 1234578999999
Q ss_pred ccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeC
Q 005277 603 VTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDV 652 (704)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~ 652 (704)
|+||..+++|+..|.|.+=.+
T Consensus 265 -----------------------------S~DGTQ~a~gt~~G~v~~A~~ 285 (737)
T KOG1524|consen 265 -----------------------------SADGTQATCGTSTGQLIVAYA 285 (737)
T ss_pred -----------------------------cCCCceeeccccCceEEEeee
Confidence 999999999999998776443
No 203
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.66 E-value=1.3e-13 Score=134.50 Aligned_cols=281 Identities=15% Similarity=0.216 Sum_probs=187.6
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCC
Q 005277 354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG 433 (704)
Q Consensus 354 V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~ 433 (704)
..+++|+.|...+++|..+| .+||+.+..+...... +..-.-.+.-+-|- .
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~--------------------------~~~~G~~~veMLfR--~ 58 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQ--------------------------FIDGGFKIVEMLFR--S 58 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhc--------------------------cccCchhhhhHhhh--h
Confidence 44599999999999998777 6899987633211110 00000111112221 3
Q ss_pred CEEE-EEeCC------CeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECC-CCceeEEeccCC
Q 005277 434 DFIL-SSSAD------TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD-RIQPLRIMAGHL 505 (704)
Q Consensus 434 ~~l~-s~s~D------g~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~-~~~~~~~~~~~~ 505 (704)
++|+ .|+.+ ..|.|||=....++..+. ...+|.+|.+.++ .+++. ..+.|.+|... +.+.++.+....
T Consensus 59 N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~ 134 (346)
T KOG2111|consen 59 NYLALVGGGSRPKYPPNKVIIWDDLKERCIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRS 134 (346)
T ss_pred ceEEEecCCCCCCCCCceEEEEecccCcEEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeeccc
Confidence 3443 44333 469999966666666665 6789999999855 34444 35889999987 556666655322
Q ss_pred --CCeeEEEEcCCCCEEEE-EECCCcEEEEeCCCCcE--EEEeecCCCCEEEEEEecCCCEEEEEeCCCe-EEEEeCCCC
Q 005277 506 --SDVDCVRWHINCNYIAT-GSSDKTVRLWDVSSGEC--VRIFIGHRSMILSLAMSPDGRYMASGDEDGT-IMMWDLASG 579 (704)
Q Consensus 506 --~~V~~v~~~p~~~~l~t-gs~dg~I~iwd~~~~~~--~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~-I~iwdl~~~ 579 (704)
..+.+++-+.+..+||. |-.-|.|+|-|+...+. ...+..|.+.|.|++.+.+|..+||++..|+ |+|||..+|
T Consensus 135 NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g 214 (346)
T KOG2111|consen 135 NPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG 214 (346)
T ss_pred CCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC
Confidence 23444443334455555 45679999999986554 4667899999999999999999999999996 899999999
Q ss_pred eeeeeecC--CCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcc
Q 005277 580 RCVTPLMG--HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTK 657 (704)
Q Consensus 580 ~~~~~~~~--h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~ 657 (704)
.++..++- ....|++++| ||++.+||++|.-|+|+|+.+.....
T Consensus 215 ~~l~E~RRG~d~A~iy~iaF----------------------------------Sp~~s~LavsSdKgTlHiF~l~~~~~ 260 (346)
T KOG2111|consen 215 TLLQELRRGVDRADIYCIAF----------------------------------SPNSSWLAVSSDKGTLHIFSLRDTEN 260 (346)
T ss_pred cEeeeeecCCchheEEEEEe----------------------------------CCCccEEEEEcCCCeEEEEEeecCCC
Confidence 99998853 3478999999 99999999999999999999987543
Q ss_pred cccc----------ccccCccccccccccCCCCcCeEEEEEccC-CcEEEEeecCCC
Q 005277 658 VLKT----------EEKSGTNRLRSLKTLPTKSTPVYSLQFSRR-NLLFAAGALSKT 703 (704)
Q Consensus 658 ~~~~----------~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~-g~~La~gs~dgt 703 (704)
.... .++.-. ....+..+.-..++..-++|..+ +.+++.+. ||+
T Consensus 261 ~~~~~SSl~~~~~~lpky~~-S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~-Dgs 315 (346)
T KOG2111|consen 261 TEDESSSLSFKRLVLPKYFS-SEWSFAKFQLPQGTQCIIAFGSETNTVIAICA-DGS 315 (346)
T ss_pred Cccccccccccccccchhcc-cceeEEEEEccCCCcEEEEecCCCCeEEEEEe-CCc
Confidence 3220 000000 00112233334667778888887 55555543 343
No 204
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.65 E-value=2.9e-14 Score=159.97 Aligned_cols=279 Identities=17% Similarity=0.217 Sum_probs=190.0
Q ss_pred EEEEeeCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCcc
Q 005277 344 FYTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG 422 (704)
Q Consensus 344 ~~~~~~~~~~V~~~~fs~d-g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 422 (704)
.-.++.|...|..++.++. +.++++|+.||+|++|++...... .+..+...++..-.+
T Consensus 1041 VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~---------------------~~s~rS~ltys~~~s 1099 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE---------------------GGSARSELTYSPEGS 1099 (1431)
T ss_pred eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcC---------------------cceeeeeEEEeccCC
Confidence 4456778888888888765 599999999999999998763211 012334444554668
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--ce-----eEEeecC-CcCeeE-EEEcC-CC-CEEEEEeCCCeEEEEE
Q 005277 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLN--AN-----LVCYKGH-NYPVWD-VQFNP-QG-HYFASSSHDRTARIWS 491 (704)
Q Consensus 423 ~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~--~~-----~~~~~~h-~~~V~~-v~~sp-~~-~~l~sgs~dg~i~lwd 491 (704)
++.++...+.++.++.++.||.|++.+++.. .. ......+ .+.+.+ -+|.. .+ ..++.+..-+.+..||
T Consensus 1100 r~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D 1179 (1431)
T KOG1240|consen 1100 RVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWD 1179 (1431)
T ss_pred ceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEec
Confidence 8999999999999999999999999998852 11 1111222 223333 23332 23 3788888889999999
Q ss_pred CCCCceeEEec--cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEee-cCCCCEEEEEEecCC---CEEEEE
Q 005277 492 MDRIQPLRIMA--GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSPDG---RYMASG 565 (704)
Q Consensus 492 ~~~~~~~~~~~--~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~i~~l~~spdg---~~l~sg 565 (704)
++........+ ...+.|++++.+|.++++++|+..|.+.+||+|=+.++..+. ++..+|+.+..+|-. ...+++
T Consensus 1180 ~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~ 1259 (1431)
T KOG1240|consen 1180 TRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSA 1259 (1431)
T ss_pred chhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEe
Confidence 98765554433 345789999999999999999999999999999888777654 455788888887732 455544
Q ss_pred e--CCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeC
Q 005277 566 D--EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSA 643 (704)
Q Consensus 566 ~--~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~ 643 (704)
+ ..+.|.+|++.+|.+...+... ..+..+.+..... . ... ........+++...+.++.+|+.
T Consensus 1260 ~~~~~nevs~wn~~~g~~~~vl~~s-~~~p~ls~~~Ps~---~--------~~k---p~~~~~~~~~~~~~~~~~ltggs 1324 (1431)
T KOG1240|consen 1260 GSSSNNEVSTWNMETGLRQTVLWAS-DGAPILSYALPSN---D--------ARK---PDSLAGISCGVCEKNGFLLTGGS 1324 (1431)
T ss_pred cccCCCceeeeecccCcceEEEEcC-CCCcchhhhcccc---c--------CCC---CCcccceeeecccCCceeeecCC
Confidence 4 5788999999999776666533 2223333311000 0 000 00001112233445678999999
Q ss_pred CCcEEEEeCCCCccc
Q 005277 644 DCTVKLWDVTTSTKV 658 (704)
Q Consensus 644 Dg~V~iWd~~~~~~~ 658 (704)
|+.|+.||.......
T Consensus 1325 d~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1325 DMKIRKWDPTRPEIS 1339 (1431)
T ss_pred ccceeeccCCCcccc
Confidence 999999999876654
No 205
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=3.4e-15 Score=152.70 Aligned_cols=277 Identities=21% Similarity=0.362 Sum_probs=203.2
Q ss_pred EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccc------cCCCC-----C---------CCCccccc
Q 005277 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSG------LQGEN-----D---------TTPREDII 405 (704)
Q Consensus 346 ~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~------~~~~~-----~---------~~~~~~~~ 405 (704)
.+..|.+.|+.+.|+..|..|++|+.|..|.+||+........... .+.+. + .......+
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i 216 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI 216 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence 4678999999999999999999999999999999976543322111 00000 0 00001111
Q ss_pred CCCCCccceeeccCCccCeEEEEEcCCCCE-EEEEeCCCeEEEEeCCCCceeEEe---ecCCc---CeeEEEEcCCC-CE
Q 005277 406 GPNGRKRSYTLYQGHSGPVYSASFSPLGDF-ILSSSADTTIRLWSTKLNANLVCY---KGHNY---PVWDVQFNPQG-HY 477 (704)
Q Consensus 406 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~-l~s~s~Dg~I~lwd~~~~~~~~~~---~~h~~---~V~~v~~sp~~-~~ 477 (704)
...+.......+..|.++|.-++.-|+..+ |++++.|+.+.-+|++.+.....+ ..+.. ...+++..|.. .+
T Consensus 217 ~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~ 296 (559)
T KOG1334|consen 217 LETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNE 296 (559)
T ss_pred ccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccc
Confidence 122223335567789999999999998764 779999999999999876543322 22333 46788999955 48
Q ss_pred EEEEeCCCeEEEEECCCCce------eEEecc------CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC--CC------
Q 005277 478 FASSSHDRTARIWSMDRIQP------LRIMAG------HLSDVDCVRWHINCNYIATGSSDKTVRLWDVS--SG------ 537 (704)
Q Consensus 478 l~sgs~dg~i~lwd~~~~~~------~~~~~~------~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~--~~------ 537 (704)
|++|+.|..+++||.+.... +..+.. ....|+|++|+.++.-+.++..|-.|+++.-. .|
T Consensus 297 faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~ 376 (559)
T KOG1334|consen 297 FAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPS 376 (559)
T ss_pred cccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCC
Confidence 99999999999999875321 233322 23468999999888888888889899999432 22
Q ss_pred ----cEEE-EeecCCC--CEEEEEE-ecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccc
Q 005277 538 ----ECVR-IFIGHRS--MILSLAM-SPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLK 609 (704)
Q Consensus 538 ----~~~~-~~~~h~~--~i~~l~~-spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~ 609 (704)
..+. +++||.+ .|.++.| -|...|+++|+.-|.|.||+-.+++.+..+.+-...|.|+.-
T Consensus 377 s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEp------------ 444 (559)
T KOG1334|consen 377 SPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEP------------ 444 (559)
T ss_pred cchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCC------------
Confidence 2222 3788875 4666655 567889999999999999999999999999887778999987
Q ss_pred cccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCc
Q 005277 610 ISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTST 656 (704)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~ 656 (704)
+|.-.+||++|-|..|+||--.+..
T Consensus 445 ----------------------HP~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 445 ----------------------HPHLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred ----------------------CCCCchhhccCCccceeeecCCccc
Confidence 8888999999999999999875544
No 206
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=6.7e-14 Score=153.13 Aligned_cols=287 Identities=18% Similarity=0.237 Sum_probs=207.1
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCC-
Q 005277 356 CASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGD- 434 (704)
Q Consensus 356 ~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~- 434 (704)
...||+|+++++..+ +..|.||...+ +.+++.+.+|..++.++.+.|...
T Consensus 21 ~avfSnD~k~l~~~~-~~~V~VyS~~T----------------------------g~~i~~l~~~~a~l~s~~~~~~~~~ 71 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLCT-GNFVKVYSTAT----------------------------GECITSLEDHTAPLTSVIVLPSSEN 71 (792)
T ss_pred ccccccCCcEEEEee-CCEEEEEecch----------------------------HhhhhhcccccCccceeeecCCCcc
Confidence 356899999887764 67899999876 445668889999999999988654
Q ss_pred --EEEEEeCCCeEEEEeCCCCceeEEe-----------------------------------------------------
Q 005277 435 --FILSSSADTTIRLWSTKLNANLVCY----------------------------------------------------- 459 (704)
Q Consensus 435 --~l~s~s~Dg~I~lwd~~~~~~~~~~----------------------------------------------------- 459 (704)
++++++.||+|++||...+..+.++
T Consensus 72 ~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~ 151 (792)
T KOG1963|consen 72 ANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDS 151 (792)
T ss_pred ceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccc
Confidence 6779999999999997632211100
Q ss_pred --------------------------------------------------ecCCcCeeEEEEcCCCCEEEEEeCCCeEEE
Q 005277 460 --------------------------------------------------KGHNYPVWDVQFNPQGHYFASSSHDRTARI 489 (704)
Q Consensus 460 --------------------------------------------------~~h~~~V~~v~~sp~~~~l~sgs~dg~i~l 489 (704)
..|...+++.+++|.++++|+|..||.|.+
T Consensus 152 ~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~v 231 (792)
T KOG1963|consen 152 AKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILV 231 (792)
T ss_pred cchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEE
Confidence 014455788999999999999999999999
Q ss_pred EECCC----CceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEE
Q 005277 490 WSMDR----IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG 565 (704)
Q Consensus 490 wd~~~----~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg 565 (704)
|.--. ......+..|...|.+++|+++|.+|++|+..|.+.+|.+.+++ ...+..-.++|..+.+|||+.+.+..
T Consensus 232 w~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~ 310 (792)
T KOG1963|consen 232 WRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLV 310 (792)
T ss_pred EeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEE
Confidence 96432 23456677899999999999999999999999999999999998 34455567899999999999999999
Q ss_pred eCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCC
Q 005277 566 DEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADC 645 (704)
Q Consensus 566 ~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg 645 (704)
..|+.|.+....+.....++.+-..+-.+..-+ ........|++|..+.++-.+..|
T Consensus 311 ~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~-----------------------~~~l~t~~~idpr~~~~vln~~~g 367 (792)
T KOG1963|consen 311 LEDNQIHLIKASDLEIKSTISGIKPPTPSTKTR-----------------------PQSLTTGVSIDPRTNSLVLNGHPG 367 (792)
T ss_pred ecCceEEEEeccchhhhhhccCccCCCcccccc-----------------------ccccceeEEEcCCCCceeecCCCc
Confidence 999999999887665555554332221110000 000011122277677888888999
Q ss_pred cEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEee
Q 005277 646 TVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 699 (704)
Q Consensus 646 ~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs 699 (704)
.|.+||+.+...+.++.-.... ....-..+.-+|+++.++..|.+++++-
T Consensus 368 ~vQ~ydl~td~~i~~~~v~~~n----~~~~~~n~~v~itav~~~~~gs~maT~E 417 (792)
T KOG1963|consen 368 HVQFYDLYTDSTIYKLQVCDEN----YSDGDVNIQVGITAVARSRFGSWMATLE 417 (792)
T ss_pred eEEEEeccccceeeeEEEEeec----ccCCcceeEEeeeeehhhccceEEEEee
Confidence 9999999988766443211000 0000002344678888888899988864
No 207
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.63 E-value=2.4e-14 Score=140.59 Aligned_cols=309 Identities=20% Similarity=0.279 Sum_probs=199.3
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCC---------
Q 005277 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH--------- 420 (704)
Q Consensus 350 ~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--------- 420 (704)
..+-|.++.|...|.+||+|..+|.|.++.-..... +.......++.|
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~-----------------------~ey~~~t~fqshepEFDYLkS 80 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK-----------------------GEYNFQTEFQSHEPEFDYLKS 80 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccc-----------------------cceeeeeeeeccCcccchhhh
Confidence 345689999999999999999999999997543211 001122222223
Q ss_pred ---ccCeEEEEEcCCCC--EEEEEeCCCeEEEEeCCCCce-----------------------------------eEEe-
Q 005277 421 ---SGPVYSASFSPLGD--FILSSSADTTIRLWSTKLNAN-----------------------------------LVCY- 459 (704)
Q Consensus 421 ---~~~V~~l~~sp~~~--~l~s~s~Dg~I~lwd~~~~~~-----------------------------------~~~~- 459 (704)
...|..+.|.++++ .++..+.|.+|++|.+..... .+.+
T Consensus 81 leieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~a 160 (433)
T KOG1354|consen 81 LEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYA 160 (433)
T ss_pred hhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeecc
Confidence 35788999998775 566777899999998753211 0111
Q ss_pred ecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCcee---EEeccC-----CCCeeEEEEcCC-CCEEEEEECCCcEE
Q 005277 460 KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL---RIMAGH-----LSDVDCVRWHIN-CNYIATGSSDKTVR 530 (704)
Q Consensus 460 ~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~---~~~~~~-----~~~V~~v~~~p~-~~~l~tgs~dg~I~ 530 (704)
..|+..|.+|.++.|+..++++ .|=.|.+|+++-.... .-++.+ ..-|++..|||. ++.++..++.|+|+
T Consensus 161 NaHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr 239 (433)
T KOG1354|consen 161 NAHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR 239 (433)
T ss_pred ccceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence 2588899999999999988887 4678999998743322 222222 235788999995 78888999999999
Q ss_pred EEeCCCCcEE----EEe------------ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeC-CCCeeeeeecCCCceee
Q 005277 531 LWDVSSGECV----RIF------------IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL-ASGRCVTPLMGHTSCVW 593 (704)
Q Consensus 531 iwd~~~~~~~----~~~------------~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl-~~~~~~~~~~~h~~~V~ 593 (704)
+.|+|..... ..| .+--..|..+.|+++|+++++-+. -+|++||+ ...+++.+++.|..--.
T Consensus 240 LcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~ 318 (433)
T KOG1354|consen 240 LCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRS 318 (433)
T ss_pred EeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHH
Confidence 9999843211 111 122246889999999999988654 48999999 45677777776642111
Q ss_pred eeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccccccccc-------C
Q 005277 594 TLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKS-------G 666 (704)
Q Consensus 594 sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~-------~ 666 (704)
.+.- . +-..+.-.-+-+|++.++.+++|||..+.++++++..+.......+.+ .
T Consensus 319 kLc~------l-------------YEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~ 379 (433)
T KOG1354|consen 319 KLCS------L-------------YENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRK 379 (433)
T ss_pred HHHH------H-------------hhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCcccc
Confidence 1100 0 000001111234458888999999999999999977665432221100 0
Q ss_pred cccccccccc------------CCCCcCeEEEEEccCCcEEEEeecCC
Q 005277 667 TNRLRSLKTL------------PTKSTPVYSLQFSRRNLLFAAGALSK 702 (704)
Q Consensus 667 ~~~~~~l~~~------------~~~~~~V~~l~fs~~g~~La~gs~dg 702 (704)
...++.+..- -.....+...+|+|....+|++..++
T Consensus 380 ~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~ia~aatnn 427 (433)
T KOG1354|consen 380 VLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENSIAVAATNN 427 (433)
T ss_pred cccceeeecCCCccccccccchhhhhhHHHhhccCCccceeeeeecCc
Confidence 0001111100 01233467789999999999987654
No 208
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=1.1e-14 Score=143.00 Aligned_cols=193 Identities=21% Similarity=0.327 Sum_probs=155.8
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcC--CCCEEEEEeCCCeEEEEECCCCcee--EEeccCC-CCe
Q 005277 434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRTARIWSMDRIQPL--RIMAGHL-SDV 508 (704)
Q Consensus 434 ~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp--~~~~l~sgs~dg~i~lwd~~~~~~~--~~~~~~~-~~V 508 (704)
..++++...|+|++||..+++.+..++++...+..+.|.. ..+.+.+|+.||+|++||++..... ..+..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 4578888899999999999999999999999999999987 5678999999999999999876543 3344444 467
Q ss_pred eEEEEcCCCCEEEEEE----CCCcEEEEeCCCCcE-EEEe-ecCCCCEEEEEEec-CCCEEEEEeCCCeEEEEeCCCCe-
Q 005277 509 DCVRWHINCNYIATGS----SDKTVRLWDVSSGEC-VRIF-IGHRSMILSLAMSP-DGRYMASGDEDGTIMMWDLASGR- 580 (704)
Q Consensus 509 ~~v~~~p~~~~l~tgs----~dg~I~iwd~~~~~~-~~~~-~~h~~~i~~l~~sp-dg~~l~sg~~dg~I~iwdl~~~~- 580 (704)
.|++..-+++.+++|+ .+-.|.+||+|..+. ++.+ ..|...|++++|+| +.+.|++|+.||.|.+||+....
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 7777766888999986 467899999998765 5544 47999999999999 56799999999999999987542
Q ss_pred --eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCC-CEEEEEeCCCcEEEEeCCCCcc
Q 005277 581 --CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEG-SLLASGSADCTVKLWDVTTSTK 657 (704)
Q Consensus 581 --~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g-~~lasgs~Dg~V~iWd~~~~~~ 657 (704)
.+...-.|...|..+.| ..++ +.|.+-+..++..+|+++.+..
T Consensus 201 eDaL~~viN~~sSI~~igw----------------------------------~~~~ykrI~clTH~Etf~~~ele~~~~ 246 (376)
T KOG1188|consen 201 EDALLHVINHGSSIHLIGW----------------------------------LSKKYKRIMCLTHMETFAIYELEDGSE 246 (376)
T ss_pred hhhHHHhhcccceeeeeee----------------------------------ecCCcceEEEEEccCceeEEEccCCCh
Confidence 22233457788999999 4443 5688889999999999998875
Q ss_pred ccc
Q 005277 658 VLK 660 (704)
Q Consensus 658 ~~~ 660 (704)
...
T Consensus 247 ~~~ 249 (376)
T KOG1188|consen 247 ETW 249 (376)
T ss_pred hhc
Confidence 433
No 209
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=3.3e-15 Score=154.31 Aligned_cols=207 Identities=27% Similarity=0.480 Sum_probs=158.8
Q ss_pred EeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEE
Q 005277 347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (704)
Q Consensus 347 ~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 426 (704)
+.+|.+-|+|++|+.||.+||+|+.|-.+.|||.-.. +.....-.||...|.+
T Consensus 46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~---------------------------KllhsI~TgHtaNIFs 98 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEY---------------------------KLLHSISTGHTANIFS 98 (758)
T ss_pred hccccceecceeecCCCCEEeecCCcceEEeecchhc---------------------------ceeeeeecccccceeE
Confidence 6799999999999999999999999999999997531 2233455789999999
Q ss_pred EEEcCC--CCEEEEEeCCCeEEEEeCCC----------CceeEEeecCCcCeeEEEEcCCC-CEEEEEeCCCeEEEEECC
Q 005277 427 ASFSPL--GDFILSSSADTTIRLWSTKL----------NANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMD 493 (704)
Q Consensus 427 l~~sp~--~~~l~s~s~Dg~I~lwd~~~----------~~~~~~~~~h~~~V~~v~~sp~~-~~l~sgs~dg~i~lwd~~ 493 (704)
+.|-|. ++.+++|+.|..|+++|+.. ......+..|...|..|+..|++ +.|++++.||+++-+|++
T Consensus 99 vKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiR 178 (758)
T KOG1310|consen 99 VKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIR 178 (758)
T ss_pred EeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeeccc
Confidence 999984 56888999999999999984 23355677899999999999988 889999999999999998
Q ss_pred CCcee----------EEeccCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCC--------C----------cEEEEee
Q 005277 494 RIQPL----------RIMAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSS--------G----------ECVRIFI 544 (704)
Q Consensus 494 ~~~~~----------~~~~~~~~~V~~v~~~p~-~~~l~tgs~dg~I~iwd~~~--------~----------~~~~~~~ 544 (704)
..... ..+....-...|+..+|. ..+|++|+.|-..++||.+. + .|++.|.
T Consensus 179 Eph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~ 258 (758)
T KOG1310|consen 179 EPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFS 258 (758)
T ss_pred CCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheec
Confidence 63211 111222234678888884 67899999999999999531 1 1344332
Q ss_pred -cCC----C-------CEEEEEEecCCCEEEEEeCCCeEEEEeCCCCe
Q 005277 545 -GHR----S-------MILSLAMSPDGRYMASGDEDGTIMMWDLASGR 580 (704)
Q Consensus 545 -~h~----~-------~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~ 580 (704)
+|- + .++-+.|+|+|.-|.+.-..-.|+++|+..++
T Consensus 259 p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~ 306 (758)
T KOG1310|consen 259 PGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDK 306 (758)
T ss_pred CccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCC
Confidence 222 1 25668899999876665555689999987653
No 210
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=2e-14 Score=158.70 Aligned_cols=251 Identities=17% Similarity=0.243 Sum_probs=179.1
Q ss_pred CCEEEEEEcC--CCCEEEEEeCCCcEEEEEcccCC--ccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEE
Q 005277 352 NGLNCASISQ--DGSLVAGGFSDSSLKVWDMAKLG--QQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA 427 (704)
Q Consensus 352 ~~V~~~~fs~--dg~~lasg~~dg~I~iwdl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 427 (704)
..|+.+.+-. |..++.+|+.||.|+||+--... .........+ ....+.+..+.=.-+
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~------------------Ls~~~~~~r~~~~v~ 1171 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSS------------------LSDQLPGARGTGLVV 1171 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeecc------------------ccccCccCCCCCeee
Confidence 3577777754 57799999999999999743211 0000000000 000011111222456
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeec-CCcCeeEEEEcC-CCCEEEEEeCCCeEEEEECCCCc---eeEEec
Q 005277 428 SFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG-HNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQ---PLRIMA 502 (704)
Q Consensus 428 ~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~-h~~~V~~v~~sp-~~~~l~sgs~dg~i~lwd~~~~~---~~~~~~ 502 (704)
.|.....+|++++.-..|+|||......+..+.. ....|+++.-+- .|+.++.|..||.|++||.+... .+...+
T Consensus 1172 dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R 1251 (1387)
T KOG1517|consen 1172 DWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR 1251 (1387)
T ss_pred ehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeec
Confidence 7888777888888788999999998777766653 345577665544 57999999999999999997543 567778
Q ss_pred cCCCC--eeEEEEcCCCCE-EEEEECCCcEEEEeCCCCcEEE--EeecCC--C-CEEEEEEecCCCEEEEEeCCCeEEEE
Q 005277 503 GHLSD--VDCVRWHINCNY-IATGSSDKTVRLWDVSSGECVR--IFIGHR--S-MILSLAMSPDGRYMASGDEDGTIMMW 574 (704)
Q Consensus 503 ~~~~~--V~~v~~~p~~~~-l~tgs~dg~I~iwd~~~~~~~~--~~~~h~--~-~i~~l~~spdg~~l~sg~~dg~I~iw 574 (704)
.|... |..+.+.++|-- |++|+.+|.|++||+|...... ....|. + ..+++..+++...+|+|+. +.|.||
T Consensus 1252 ~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy 1330 (1387)
T KOG1517|consen 1252 EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIY 1330 (1387)
T ss_pred ccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEE
Confidence 88887 999999987654 9999999999999999742222 222333 3 5999999999999999998 999999
Q ss_pred eCCCCeeeeeecC-------CCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcE
Q 005277 575 DLASGRCVTPLMG-------HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTV 647 (704)
Q Consensus 575 dl~~~~~~~~~~~-------h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V 647 (704)
++. |+.+..++. ..+.+.++.| +|..-++|+|+.|.+|
T Consensus 1331 ~~~-G~~l~~~k~n~~F~~q~~gs~scL~F----------------------------------HP~~~llAaG~~Ds~V 1375 (1387)
T KOG1517|consen 1331 SLS-GEQLNIIKYNPGFMGQRIGSVSCLAF----------------------------------HPHRLLLAAGSADSTV 1375 (1387)
T ss_pred ecC-hhhhcccccCcccccCcCCCcceeee----------------------------------cchhHhhhhccCCceE
Confidence 975 444433332 2256677887 8999999999999999
Q ss_pred EEEeCCCCc
Q 005277 648 KLWDVTTST 656 (704)
Q Consensus 648 ~iWd~~~~~ 656 (704)
.||....+.
T Consensus 1376 ~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1376 SIYSCEKPR 1384 (1387)
T ss_pred EEeecCCcC
Confidence 999987653
No 211
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.62 E-value=1e-15 Score=155.51 Aligned_cols=220 Identities=19% Similarity=0.266 Sum_probs=191.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec
Q 005277 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA 502 (704)
Q Consensus 423 ~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~ 502 (704)
.-+.+.++.+|++|+.|+..|.|-.+|+.+++....+. -...|.++.|..+.++||++ ....++|||-. +..+..+.
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~-GtElHClk 207 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYDNN-GTELHCLK 207 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEecCC-CcEEeehh
Confidence 34789999999999999999999999999998877776 35579999999888888877 55889999965 45566666
Q ss_pred cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeee
Q 005277 503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582 (704)
Q Consensus 503 ~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~ 582 (704)
.| ..|..+.|-|..-+|++++..|.++.-|+.+|+.+..+....+.+..++-+|-...+-+|...|+|.+|...+..++
T Consensus 208 ~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePL 286 (545)
T KOG1272|consen 208 RH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPL 286 (545)
T ss_pred hc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchH
Confidence 44 67899999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred eeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccc
Q 005277 583 TPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTE 662 (704)
Q Consensus 583 ~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~ 662 (704)
..+..|.++|.++++ .++|+++||.|.|..|+|||+..-..
T Consensus 287 vKiLcH~g~V~siAv----------------------------------~~~G~YMaTtG~Dr~~kIWDlR~~~q----- 327 (545)
T KOG1272|consen 287 VKILCHRGPVSSIAV----------------------------------DRGGRYMATTGLDRKVKIWDLRNFYQ----- 327 (545)
T ss_pred HHHHhcCCCcceEEE----------------------------------CCCCcEEeecccccceeEeeeccccc-----
Confidence 999999999999999 99999999999999999999988543
Q ss_pred cccCccccccccccCCCCcCeEEEEEccCCcEEE
Q 005277 663 EKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFA 696 (704)
Q Consensus 663 ~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La 696 (704)
+.++.+ ..+...++||..|.+.+
T Consensus 328 ----------l~t~~t-p~~a~~ls~SqkglLA~ 350 (545)
T KOG1272|consen 328 ----------LHTYRT-PHPASNLSLSQKGLLAL 350 (545)
T ss_pred ----------cceeec-CCCccccccccccceee
Confidence 334434 56788899998886443
No 212
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.62 E-value=2.1e-14 Score=150.49 Aligned_cols=196 Identities=20% Similarity=0.287 Sum_probs=148.7
Q ss_pred EcCCCCEEEE--EeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcC-CCCE
Q 005277 359 ISQDGSLVAG--GFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP-LGDF 435 (704)
Q Consensus 359 fs~dg~~las--g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~ 435 (704)
|+.+...+|+ .+.-|.|-||+++..+...- +. .-..+ ....|+.+.|.| |...
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPD--------------------gv--~p~l~--Ngt~vtDl~WdPFD~~r 642 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPD--------------------GV--MPGLF--NGTLVTDLHWDPFDDER 642 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCc--------------------cc--ccccc--cCceeeecccCCCChHH
Confidence 3344555554 34578999999986432210 00 00111 235689999999 5568
Q ss_pred EEEEeCCCeEEEEeCCCC-------ceeEEeecCCcCeeEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeEEeccCCCC
Q 005277 436 ILSSSADTTIRLWSTKLN-------ANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD 507 (704)
Q Consensus 436 l~s~s~Dg~I~lwd~~~~-------~~~~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~ 507 (704)
|+.++.||.|++|.+..+ ..-..+..|...|+++.|+| -...+++++.|-+|++||+.+......+.+|.+.
T Consensus 643 LAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdq 722 (1012)
T KOG1445|consen 643 LAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQ 722 (1012)
T ss_pred eeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCc
Confidence 999999999999998754 34566788999999999999 5678999999999999999999999999999999
Q ss_pred eeEEEEcCCCCEEEEEECCCcEEEEeCCCCc-EEEEeecCC-CCEEEEEEecCCCEEEEEeCC----CeEEEEeCCC
Q 005277 508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGE-CVRIFIGHR-SMILSLAMSPDGRYMASGDED----GTIMMWDLAS 578 (704)
Q Consensus 508 V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~-~~~~~~~h~-~~i~~l~~spdg~~l~sg~~d----g~I~iwdl~~ 578 (704)
|..++|+|+|+.+++.+.||+|++|..+++. .++.-.+.. ..--.+.|.-+|+++++.+.| ..|.+||..+
T Consensus 723 If~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 723 IFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQT 799 (1012)
T ss_pred eeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhh
Confidence 9999999999999999999999999998764 333322211 223457788899999887765 4677887654
No 213
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=3.9e-13 Score=147.32 Aligned_cols=219 Identities=17% Similarity=0.150 Sum_probs=151.3
Q ss_pred cCCccCeEEEEEcCCCCEEEEEe---CCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEE-eCCC--eEEEEE
Q 005277 418 QGHSGPVYSASFSPLGDFILSSS---ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS-SHDR--TARIWS 491 (704)
Q Consensus 418 ~~h~~~V~~l~~sp~~~~l~s~s---~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sg-s~dg--~i~lwd 491 (704)
..+...+.+.+|+|||+.|+..+ .+..|.+|++.+++... +......+....|+|+|+.++.. +.+| .|.+||
T Consensus 195 t~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d 273 (429)
T PRK03629 195 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMD 273 (429)
T ss_pred ecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEE
Confidence 34567899999999999888553 34579999998775432 22233345578999999988765 4444 588999
Q ss_pred CCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECC-Cc--EEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCC
Q 005277 492 MDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD-KT--VRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED 568 (704)
Q Consensus 492 ~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d-g~--I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~d 568 (704)
++++...+... +...+....|+|+|+.|+..+.+ +. |+++|+.++...+ +..+.....+..|+|||++|+..+.+
T Consensus 274 ~~tg~~~~lt~-~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~-lt~~~~~~~~~~~SpDG~~Ia~~~~~ 351 (429)
T PRK03629 274 LASGQIRQVTD-GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQR-ITWEGSQNQDADVSSDGKFMVMVSSN 351 (429)
T ss_pred CCCCCEEEccC-CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEEEcc
Confidence 98876655443 44567889999999999877654 44 5555776665443 33444556778999999999876543
Q ss_pred ---CeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCC
Q 005277 569 ---GTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADC 645 (704)
Q Consensus 569 ---g~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg 645 (704)
..|.+||+.++... .+... ....+..| +|||++|+.++.++
T Consensus 352 ~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~----------------------------------SpDG~~i~~~s~~~ 395 (429)
T PRK03629 352 GGQQHIAKQDLATGGVQ-VLTDT-FLDETPSI----------------------------------APNGTMVIYSSSQG 395 (429)
T ss_pred CCCceEEEEECCCCCeE-EeCCC-CCCCCceE----------------------------------CCCCCEEEEEEcCC
Confidence 35888999887643 23221 12234566 99999999988876
Q ss_pred c---EEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccC
Q 005277 646 T---VKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRR 691 (704)
Q Consensus 646 ~---V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~ 691 (704)
. +.+|++.... ...+.++.+.+...+|+|-
T Consensus 396 ~~~~l~~~~~~G~~----------------~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 396 MGSVLNLVSTDGRF----------------KARLPATDGQVKFPAWSPY 428 (429)
T ss_pred CceEEEEEECCCCC----------------eEECccCCCCcCCcccCCC
Confidence 4 6777775432 2345566777888888873
No 214
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.61 E-value=1.6e-13 Score=136.38 Aligned_cols=228 Identities=17% Similarity=0.257 Sum_probs=173.2
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCC--CeEEEEECCCCceeE
Q 005277 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD--RTARIWSMDRIQPLR 499 (704)
Q Consensus 422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~d--g~i~lwd~~~~~~~~ 499 (704)
..+..+.|+.+...|..|+.|| .++++................|..+-|+ ..++|..+.+ +.++++++.....+.
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~IC 82 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTIC 82 (391)
T ss_pred cceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCceEE
Confidence 4567777999888898999997 7888887655533333334456666676 4455555543 459999998877776
Q ss_pred EeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeec---CCCCEEEEEEecCCCEEEEE--eCCCeEEEE
Q 005277 500 IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG---HRSMILSLAMSPDGRYMASG--DEDGTIMMW 574 (704)
Q Consensus 500 ~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~---h~~~i~~l~~spdg~~l~sg--~~dg~I~iw 574 (704)
.+. ....|.+|.++. +.|++.-.+ .|+|||+++.+.+.++.. +...+.++.+++.+.+|+.- ...|.|.+|
T Consensus 83 e~~-fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~ 158 (391)
T KOG2110|consen 83 EIF-FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLF 158 (391)
T ss_pred EEe-cCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEE
Confidence 655 456888998854 456666544 499999999998887653 44457777777777788863 356899999
Q ss_pred eCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCc-EEEEeCC
Q 005277 575 DLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCT-VKLWDVT 653 (704)
Q Consensus 575 dl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~-V~iWd~~ 653 (704)
|+.+-+.+..+..|.+++-+++| +++|.+|||+|..|+ |||+.+.
T Consensus 159 d~~nl~~v~~I~aH~~~lAalaf----------------------------------s~~G~llATASeKGTVIRVf~v~ 204 (391)
T KOG2110|consen 159 DTINLQPVNTINAHKGPLAALAF----------------------------------SPDGTLLATASEKGTVIRVFSVP 204 (391)
T ss_pred EcccceeeeEEEecCCceeEEEE----------------------------------CCCCCEEEEeccCceEEEEEEcC
Confidence 99999999999999999999999 999999999999996 7999999
Q ss_pred CCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 654 TSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
+++++.++.. ......|++++|+|++++|++.+..+|
T Consensus 205 ~G~kl~eFRR-------------G~~~~~IySL~Fs~ds~~L~~sS~TeT 241 (391)
T KOG2110|consen 205 EGQKLYEFRR-------------GTYPVSIYSLSFSPDSQFLAASSNTET 241 (391)
T ss_pred CccEeeeeeC-------------CceeeEEEEEEECCCCCeEEEecCCCe
Confidence 9876533211 122456999999999999999998775
No 215
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=2.2e-13 Score=134.87 Aligned_cols=192 Identities=19% Similarity=0.316 Sum_probs=141.9
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCC
Q 005277 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL 432 (704)
Q Consensus 353 ~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 432 (704)
.+.-++|++.-..+|++..|-.|+||+-+... ....-......|+|++|-|.
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~ksst~----------------------------pt~Lks~sQrnvtclawRPl 151 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSSTC----------------------------PTKLKSVSQRNVTCLAWRPL 151 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCCCC----------------------------CceecchhhcceeEEEeccC
Confidence 46778899987788999999999999865410 00111123467999999997
Q ss_pred CC-EEEEEeCCCeEEEEeCCCCc--------------eeEEeecCCcCeeEEEEcCCCCEEEEEe-CCCeEEEEECCCCc
Q 005277 433 GD-FILSSSADTTIRLWSTKLNA--------------NLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWSMDRIQ 496 (704)
Q Consensus 433 ~~-~l~s~s~Dg~I~lwd~~~~~--------------~~~~~~~h~~~V~~v~~sp~~~~l~sgs-~dg~i~lwd~~~~~ 496 (704)
+. -|+.|+.. -|.+|...... .+....+| .+|++++|.+||..+++++ .|..|.|||.+++.
T Consensus 152 saselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~ 229 (445)
T KOG2139|consen 152 SASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQ 229 (445)
T ss_pred Ccceeeeeecc-eeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCC
Confidence 64 56677765 59999865321 12334456 6899999999999999998 56889999999988
Q ss_pred eeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC-CCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEe
Q 005277 497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS-SGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD 575 (704)
Q Consensus 497 ~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~-~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwd 575 (704)
.+.......+.+.-+.|+|++.+|++++-|+..++|... +..+.+... ..+.|...+|+|+|++|...+. |.-++|.
T Consensus 230 ~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~s-gsp~lys 307 (445)
T KOG2139|consen 230 KIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACS-GSPRLYS 307 (445)
T ss_pred cccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEc-CCceEEE
Confidence 777765667889999999999999999999999999554 333444333 3458999999999998765443 2334454
Q ss_pred C
Q 005277 576 L 576 (704)
Q Consensus 576 l 576 (704)
+
T Consensus 308 l 308 (445)
T KOG2139|consen 308 L 308 (445)
T ss_pred E
Confidence 4
No 216
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=1.1e-13 Score=136.83 Aligned_cols=240 Identities=16% Similarity=0.194 Sum_probs=167.7
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeec-CCcCeeEEEEcCC-CCEEEEEeCCCeEEEEECCCC----
Q 005277 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG-HNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRI---- 495 (704)
Q Consensus 422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~-h~~~V~~v~~sp~-~~~l~sgs~dg~i~lwd~~~~---- 495 (704)
..+..++|++.-..++++..|-+|++|+-.. ++...++. ....|++++|-|. +..|++|+. +-|.+|..+..
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccc
Confidence 4578899998766788999999999999886 55444543 3567999999994 566777776 55899987531
Q ss_pred ce----------eEEeccCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEE
Q 005277 496 QP----------LRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMAS 564 (704)
Q Consensus 496 ~~----------~~~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s 564 (704)
.. +....+| .+|++++|.+||..+++++ .|..|.|||..++..+.......+.++-+.|||||.+|.+
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfa 255 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFA 255 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEE
Confidence 11 1222344 6899999999999999987 4678999999999888766556678999999999999999
Q ss_pred EeCCCeEEEEeCC-CCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeC
Q 005277 565 GDEDGTIMMWDLA-SGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSA 643 (704)
Q Consensus 565 g~~dg~I~iwdl~-~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~ 643 (704)
+.-|+..++|... +.....-.. -.+.|....| +|+|++|.-...
T Consensus 256 At~davfrlw~e~q~wt~erw~l-gsgrvqtacW----------------------------------spcGsfLLf~~s 300 (445)
T KOG2139|consen 256 ATCDAVFRLWQENQSWTKERWIL-GSGRVQTACW----------------------------------SPCGSFLLFACS 300 (445)
T ss_pred ecccceeeeehhcccceecceec-cCCceeeeee----------------------------------cCCCCEEEEEEc
Confidence 9999999999654 333333222 3347777777 999987654432
Q ss_pred CCcEEEEeCCCCccccccccccCcccccccc-----ccCC----CCcCeEEEEEccCCcEEEEeec
Q 005277 644 DCTVKLWDVTTSTKVLKTEEKSGTNRLRSLK-----TLPT----KSTPVYSLQFSRRNLLFAAGAL 700 (704)
Q Consensus 644 Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~-----~~~~----~~~~V~~l~fs~~g~~La~gs~ 700 (704)
|.-++|.+.-..+........+......+. +..+ -.+++.+++|.|.|.+||+.-.
T Consensus 301 -gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fK 365 (445)
T KOG2139|consen 301 -GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFK 365 (445)
T ss_pred -CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEc
Confidence 445566655443332222111111111111 1112 2678999999999999998643
No 217
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.59 E-value=1.3e-15 Score=164.14 Aligned_cols=234 Identities=21% Similarity=0.415 Sum_probs=185.0
Q ss_pred cceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEE
Q 005277 412 RSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS 491 (704)
Q Consensus 412 ~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd 491 (704)
+.++.+.||...|+|+.|...|.++++|+.|..|+||++++..++...+||.+.|++++.+.++.++++++.|..|++|.
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEE-----eecCCCCEEEEEEecCCCEEEEEe
Q 005277 492 MDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI-----FIGHRSMILSLAMSPDGRYMASGD 566 (704)
Q Consensus 492 ~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~-----~~~h~~~i~~l~~spdg~~l~sg~ 566 (704)
+..+.++..+.+|.+.|++++|+|-. +.+.||++++||.+-...+.. + .....+.++.|..+|.-+++|+
T Consensus 261 l~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~-~~~~~~~s~~~~~~~~~f~Tgs 335 (1113)
T KOG0644|consen 261 LPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKF-TEKDLVDSILFENNGDRFLTGS 335 (1113)
T ss_pred cCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCc-ccccceeeeecccccccccccc
Confidence 99999999999999999999999964 677899999999882111111 1 1234577788888888899999
Q ss_pred CCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCc
Q 005277 567 EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCT 646 (704)
Q Consensus 567 ~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~ 646 (704)
.|+.-..|.+.... .+...+.-+.. .+....+.+++-.+..
T Consensus 336 ~d~ea~n~e~~~l~------~~~~~lif~t~---------------------------------ssd~~~~~~~ar~~~~ 376 (1113)
T KOG0644|consen 336 RDGEARNHEFEQLA------WRSNLLIFVTR---------------------------------SSDLSSIVVTARNDHR 376 (1113)
T ss_pred CCcccccchhhHhh------hhccceEEEec---------------------------------cccccccceeeeeeeE
Confidence 99988888764321 12211111111 0222356777778889
Q ss_pred EEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEE-EeecCCCC
Q 005277 647 VKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFA-AGALSKTS 704 (704)
Q Consensus 647 V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La-~gs~dgt~ 704 (704)
+++|++.++.. +..+.+|..+++.+.|+|.+..++ ++++||.+
T Consensus 377 ~~vwnl~~g~l---------------~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst 420 (1113)
T KOG0644|consen 377 LCVWNLYTGQL---------------LHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGST 420 (1113)
T ss_pred eeeeecccchh---------------hhhhcccccceeeeeecCCCcHhhhhccCCCce
Confidence 99999988753 445667888999999999775544 56667653
No 218
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.59 E-value=2.4e-14 Score=148.02 Aligned_cols=174 Identities=22% Similarity=0.372 Sum_probs=135.2
Q ss_pred cCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCC-EEEE
Q 005277 360 SQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGD-FILS 438 (704)
Q Consensus 360 s~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s 438 (704)
.|++--|..|...|.|.+.|.....-.. . + .....--+..|+|+.|-|.+. .++.
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sk---l-------------f--------ne~r~i~ktsvT~ikWvpg~~~~Fl~ 237 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSK---L-------------F--------NEERLINKSSVTCIKWVPGSDSLFLV 237 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHH---h-------------h--------hhcccccccceEEEEEEeCCCceEEE
Confidence 3567778899999999988854310000 0 0 000001237899999999665 5567
Q ss_pred EeCCCeEEEEeCCCC--------------c--------------eeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEE
Q 005277 439 SSADTTIRLWSTKLN--------------A--------------NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIW 490 (704)
Q Consensus 439 ~s~Dg~I~lwd~~~~--------------~--------------~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lw 490 (704)
+-.+|.+.++|.... . .+..+.-..+.|..++|+|||++||+.+.||.+|||
T Consensus 238 a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF 317 (636)
T KOG2394|consen 238 AHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIF 317 (636)
T ss_pred EEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEe
Confidence 778999999975411 0 111111224578889999999999999999999999
Q ss_pred ECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEec
Q 005277 491 SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP 557 (704)
Q Consensus 491 d~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~sp 557 (704)
|.++.+.+..++..-+...|++|+|||+||++|+.|.-|.||.+..++.+..-.+|+.+|+.++|.|
T Consensus 318 ~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 318 DFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred eccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 9999888888888888999999999999999999999999999999999999999999999999983
No 219
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=6.5e-13 Score=145.56 Aligned_cols=217 Identities=15% Similarity=0.117 Sum_probs=150.6
Q ss_pred EeeCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC
Q 005277 347 FINTHNGLNCASISQDGSLVAGGFS---DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (704)
Q Consensus 347 ~~~~~~~V~~~~fs~dg~~lasg~~---dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 423 (704)
+..+...+.+.+|||||+.||..+. +..|.+|++.+... .....+. +.
T Consensus 194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~--------------------------~~l~~~~---~~ 244 (429)
T PRK03629 194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--------------------------RQVASFP---RH 244 (429)
T ss_pred eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe--------------------------EEccCCC---CC
Confidence 3455668999999999999987643 35688888765211 1111222 33
Q ss_pred eEEEEEcCCCCEEEEE-eCCC--eEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCC-Ce--EEEEECCCCce
Q 005277 424 VYSASFSPLGDFILSS-SADT--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD-RT--ARIWSMDRIQP 497 (704)
Q Consensus 424 V~~l~~sp~~~~l~s~-s~Dg--~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~d-g~--i~lwd~~~~~~ 497 (704)
+....|+|||+.|+.. +.+| .|.+||+.++.... +..+...+....|+|+|+.++..+.+ +. |.++|+.++..
T Consensus 245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~ 323 (429)
T PRK03629 245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP 323 (429)
T ss_pred cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe
Confidence 4468999999988754 4455 58889998776544 34445567889999999988777653 44 44456666654
Q ss_pred eEEeccCCCCeeEEEEcCCCCEEEEEECC---CcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCe---E
Q 005277 498 LRIMAGHLSDVDCVRWHINCNYIATGSSD---KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT---I 571 (704)
Q Consensus 498 ~~~~~~~~~~V~~v~~~p~~~~l~tgs~d---g~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~---I 571 (704)
.+ +..+.....+..|+|+|++|+..+.+ ..|.+||+.++.... +... .......|+|||++|+.++.++. +
T Consensus 324 ~~-lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l 400 (429)
T PRK03629 324 QR-ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDT-FLDETPSIAPNGTMVIYSSSQGMGSVL 400 (429)
T ss_pred EE-eecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCC-CCCCCceECCCCCEEEEEEcCCCceEE
Confidence 33 33344456678999999999886643 358899998887543 3322 23456789999999999887764 6
Q ss_pred EEEeCCCCeeeeeecCCCceeeeeee
Q 005277 572 MMWDLASGRCVTPLMGHTSCVWTLAY 597 (704)
Q Consensus 572 ~iwdl~~~~~~~~~~~h~~~V~sl~~ 597 (704)
.++++ +|+....+.+|.+.+...+|
T Consensus 401 ~~~~~-~G~~~~~l~~~~~~~~~p~W 425 (429)
T PRK03629 401 NLVST-DGRFKARLPATDGQVKFPAW 425 (429)
T ss_pred EEEEC-CCCCeEECccCCCCcCCccc
Confidence 77777 56666777788888888888
No 220
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.58 E-value=3.4e-13 Score=151.54 Aligned_cols=220 Identities=17% Similarity=0.230 Sum_probs=161.6
Q ss_pred CccceeeccCCccCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCC-------ceeEEeecCCcCeeEEEEcCCCCEEEEE
Q 005277 410 RKRSYTLYQGHSGPVYSASFSPLG-DFILSSSADTTIRLWSTKLN-------ANLVCYKGHNYPVWDVQFNPQGHYFASS 481 (704)
Q Consensus 410 ~~~~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~Dg~I~lwd~~~~-------~~~~~~~~h~~~V~~v~~sp~~~~l~sg 481 (704)
++..+..+..|+..|..++.++.. .+++|||.||+|++|+.+.- +...++.....++.++.+.+.+..||++
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence 355677788999999999988766 89999999999999997632 2344555567889999999999999999
Q ss_pred eCCCeEEEEECCCC--c-----eeEEeccCCC-C-eeEEEEcC-CC-CEEEEEECCCcEEEEeCCCCcEEEEee--cCCC
Q 005277 482 SHDRTARIWSMDRI--Q-----PLRIMAGHLS-D-VDCVRWHI-NC-NYIATGSSDKTVRLWDVSSGECVRIFI--GHRS 548 (704)
Q Consensus 482 s~dg~i~lwd~~~~--~-----~~~~~~~~~~-~-V~~v~~~p-~~-~~l~tgs~dg~I~iwd~~~~~~~~~~~--~h~~ 548 (704)
+.||.|++.+++.. . ..+....+.. . |.+-+|.. .+ ..++.+..-+.|..||+++.......+ ...+
T Consensus 1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence 99999999999862 1 2222222222 2 23333332 23 377888889999999999876555443 3457
Q ss_pred CEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeec-CCCceeeeeeeeeeehccccccccccccccceeeeeeeEEe
Q 005277 549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM-GHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIY 627 (704)
Q Consensus 549 ~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~-~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (704)
.|++++.+|.+.++++|+..|.+.+||++-+.++..+. ++..++..+..++
T Consensus 1197 ~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~---------------------------- 1248 (1431)
T KOG1240|consen 1197 LVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCP---------------------------- 1248 (1431)
T ss_pred ceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeec----------------------------
Confidence 89999999999999999999999999999888887764 3446666655421
Q ss_pred ecccCCCCCEEEEEe--CCCcEEEEeCCCCccccc
Q 005277 628 FGCASCEGSLLASGS--ADCTVKLWDVTTSTKVLK 660 (704)
Q Consensus 628 ~~~~s~~g~~lasgs--~Dg~V~iWd~~~~~~~~~ 660 (704)
+.+.....++++ ..+-|.+|++.++.....
T Consensus 1249 ---~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~v 1280 (1431)
T KOG1240|consen 1249 ---TYPQESVSVSAGSSSNNEVSTWNMETGLRQTV 1280 (1431)
T ss_pred ---cCCCCceEEEecccCCCceeeeecccCcceEE
Confidence 134334554444 578899999999865433
No 221
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=4.9e-13 Score=147.06 Aligned_cols=199 Identities=18% Similarity=0.179 Sum_probs=139.8
Q ss_pred ccCCccCeEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEE-EEeCCC--eEEEE
Q 005277 417 YQGHSGPVYSASFSPLGDFILSSSA---DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA-SSSHDR--TARIW 490 (704)
Q Consensus 417 ~~~h~~~V~~l~~sp~~~~l~s~s~---Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~-sgs~dg--~i~lw 490 (704)
+..|...+.+.+|+||++.|+.++. +..|.+||+.++.... +..+.+...+..|+|+|+.++ +.+.+| .|++|
T Consensus 199 lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~ 277 (433)
T PRK04922 199 ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVM 277 (433)
T ss_pred eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEE
Confidence 4456678999999999999887763 3469999998776533 333444556789999998775 445555 59999
Q ss_pred ECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEEC-CCc--EEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeC
Q 005277 491 SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-DKT--VRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE 567 (704)
Q Consensus 491 d~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~-dg~--I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~ 567 (704)
|+.+++.. .+..+.......+|+|+|++|+.++. +|. |+++|+.+++..+.. .+.......+|+|||++|+..+.
T Consensus 278 d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt-~~g~~~~~~~~SpDG~~Ia~~~~ 355 (433)
T PRK04922 278 DLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT-FQGNYNARASVSPDGKKIAMVHG 355 (433)
T ss_pred ECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee-cCCCCccCEEECCCCCEEEEEEC
Confidence 99887644 44455555677899999999887764 444 777787777654432 33344557899999999987654
Q ss_pred CC---eEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCC
Q 005277 568 DG---TIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSAD 644 (704)
Q Consensus 568 dg---~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~D 644 (704)
++ .|.+||+.+++.. .+. +........| +|+|++|+..+.+
T Consensus 356 ~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~----------------------------------spdG~~i~~~s~~ 399 (433)
T PRK04922 356 SGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSF----------------------------------APNGSMVLYATRE 399 (433)
T ss_pred CCCceeEEEEECCCCCeE-ECC-CCCCCCCceE----------------------------------CCCCCEEEEEEec
Confidence 43 6999999887654 332 2223445567 9999988776653
Q ss_pred ---CcEEEEeCCC
Q 005277 645 ---CTVKLWDVTT 654 (704)
Q Consensus 645 ---g~V~iWd~~~ 654 (704)
+.|.+|++..
T Consensus 400 ~g~~~L~~~~~~g 412 (433)
T PRK04922 400 GGRGVLAAVSTDG 412 (433)
T ss_pred CCceEEEEEECCC
Confidence 3577777754
No 222
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.58 E-value=7.7e-13 Score=129.33 Aligned_cols=269 Identities=17% Similarity=0.279 Sum_probs=187.4
Q ss_pred CCEEEEEEcCCCCEEEE-EeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEc
Q 005277 352 NGLNCASISQDGSLVAG-GFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (704)
Q Consensus 352 ~~V~~~~fs~dg~~las-g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 430 (704)
+.|.-+.|..|..++++ ...++.|.+|++.. ..-.........++.+++||
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Q----------------------------pew~ckIdeg~agls~~~WS 100 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQ----------------------------PEWYCKIDEGQAGLSSISWS 100 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeec----------------------------ceeEEEeccCCCcceeeeEC
Confidence 45667788888666555 46688999999875 22334455567889999999
Q ss_pred CCCCEEE-EEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeC--------------------------
Q 005277 431 PLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-------------------------- 483 (704)
Q Consensus 431 p~~~~l~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~-------------------------- 483 (704)
|||+.++ ++.-|-.|.+|++.+.+.... +-....+..++|+|+|++.+.++.
T Consensus 101 PdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~ 179 (447)
T KOG4497|consen 101 PDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTI 179 (447)
T ss_pred CCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcc
Confidence 9997554 777899999999997665432 222345688999999998887753
Q ss_pred ----------CCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEE------------
Q 005277 484 ----------DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVR------------ 541 (704)
Q Consensus 484 ----------dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~------------ 541 (704)
+..+.+||.--...+..+. ..-.+..++|+|.+++|++|+.|+.+|+.+--+-+...
T Consensus 180 DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~ 258 (447)
T KOG4497|consen 180 DLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPT 258 (447)
T ss_pred cccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCch
Confidence 2334455432222222222 22468889999999999999999998885432111000
Q ss_pred ------------------------------------------------Ee------ecCCCCEEEEEEecCCCEEEEEeC
Q 005277 542 ------------------------------------------------IF------IGHRSMILSLAMSPDGRYMASGDE 567 (704)
Q Consensus 542 ------------------------------------------------~~------~~h~~~i~~l~~spdg~~l~sg~~ 567 (704)
.. ......+.-++|++|..++++-.+
T Consensus 259 ~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd 338 (447)
T KOG4497|consen 259 LHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRND 338 (447)
T ss_pred hhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecC
Confidence 00 111234667999999999988654
Q ss_pred --CCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCC
Q 005277 568 --DGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADC 645 (704)
Q Consensus 568 --dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg 645 (704)
-+.+.+||++..+....+. ...+|....| .|....|+.+....
T Consensus 339 ~~PnalW~Wdlq~l~l~avLi-Qk~piraf~W----------------------------------dP~~prL~vctg~s 383 (447)
T KOG4497|consen 339 KYPNALWLWDLQNLKLHAVLI-QKHPIRAFEW----------------------------------DPGRPRLVVCTGKS 383 (447)
T ss_pred CCCceEEEEechhhhhhhhhh-hccceeEEEe----------------------------------CCCCceEEEEcCCc
Confidence 3679999998776544443 5568889999 88888888887777
Q ss_pred cEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecC
Q 005277 646 TVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS 701 (704)
Q Consensus 646 ~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~d 701 (704)
.+++|...... ....+...-.|.++.|..+|..++..+.|
T Consensus 384 rLY~W~psg~~----------------~V~vP~~GF~i~~l~W~~~g~~i~l~~kD 423 (447)
T KOG4497|consen 384 RLYFWAPSGPR----------------VVGVPKKGFNIQKLQWLQPGEFIVLCGKD 423 (447)
T ss_pred eEEEEcCCCce----------------EEecCCCCceeeeEEecCCCcEEEEEcCC
Confidence 89999876532 22345556789999999999999888776
No 223
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=1.7e-12 Score=142.91 Aligned_cols=202 Identities=13% Similarity=0.031 Sum_probs=143.3
Q ss_pred eeccCCccCeEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEE-EEeCCCe--EE
Q 005277 415 TLYQGHSGPVYSASFSPLGDFILSSSA---DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA-SSSHDRT--AR 488 (704)
Q Consensus 415 ~~~~~h~~~V~~l~~sp~~~~l~s~s~---Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~-sgs~dg~--i~ 488 (704)
+.+..|...+.+.+|+|||+.|+..+. +..|.+||+.++... .+..+.+.+....|+|+|+.++ +.+.++. |.
T Consensus 195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 273 (435)
T PRK05137 195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIY 273 (435)
T ss_pred EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEE
Confidence 334567789999999999998886653 468999999877653 4445666788899999998775 4555555 77
Q ss_pred EEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEEC-CC--cEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEE
Q 005277 489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-DK--TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG 565 (704)
Q Consensus 489 lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~-dg--~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg 565 (704)
+||++++... .+..+........|+|+|+.|+..+. +| .|++||+.++...+ +..+.+.+....|+|||++|+..
T Consensus 274 ~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~~~~~~~~SpdG~~ia~~ 351 (435)
T PRK05137 274 TMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGGRYSTPVWSPRGDLIAFT 351 (435)
T ss_pred EEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eecCCCcccCeEECCCCCEEEEE
Confidence 7788876554 45556666778999999999988764 33 58888987766544 33345567778999999999876
Q ss_pred eCC---CeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEe
Q 005277 566 DED---GTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGS 642 (704)
Q Consensus 566 ~~d---g~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs 642 (704)
+.+ ..|.+||+.++.. ..+. ....+.+..| +|+|+.|+..+
T Consensus 352 ~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~----------------------------------spDG~~i~~~~ 395 (435)
T PRK05137 352 KQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTW----------------------------------APNGRVIMFFR 395 (435)
T ss_pred EcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeE----------------------------------CCCCCEEEEEE
Confidence 543 3688899865543 2332 2224566777 99999887655
Q ss_pred CC------CcEEEEeCCCC
Q 005277 643 AD------CTVKLWDVTTS 655 (704)
Q Consensus 643 ~D------g~V~iWd~~~~ 655 (704)
.+ ..+.++|+..+
T Consensus 396 ~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 396 QTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred ccCCCCCcceEEEEECCCC
Confidence 43 25777777554
No 224
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.56 E-value=5.6e-14 Score=137.21 Aligned_cols=222 Identities=16% Similarity=0.186 Sum_probs=156.4
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCE
Q 005277 356 CASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDF 435 (704)
Q Consensus 356 ~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~ 435 (704)
-+.|||+|+++|+.+.- .+.|=|..+.... + +..--..|.-+.|..|..+
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~----------------------------q-lf~cldki~yieW~ads~~ 62 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLH----------------------------Q-LFLCLDKIVYIEWKADSCH 62 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHH----------------------------H-HHHHHHHhhheeeecccee
Confidence 35799999999999755 6667665542111 1 1111356778899988887
Q ss_pred EE-EEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCE-EEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEE
Q 005277 436 IL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY-FASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRW 513 (704)
Q Consensus 436 l~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~-l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~ 513 (704)
++ ....|+.|.+|++...+-...+.....++.+++|||+|+. +.+...+-.|.+|.+.+.+.... ......+..++|
T Consensus 63 ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f 141 (447)
T KOG4497|consen 63 ILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAF 141 (447)
T ss_pred eeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEE
Confidence 66 5578889999999988888888888889999999999955 55667899999999988654433 333455689999
Q ss_pred cCCCCEEEEEECCCcE---EEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeC--CCeEEEEeCCCCeeeeeecCC
Q 005277 514 HINCNYIATGSSDKTV---RLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE--DGTIMMWDLASGRCVTPLMGH 588 (704)
Q Consensus 514 ~p~~~~l~tgs~dg~I---~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~--dg~I~iwdl~~~~~~~~~~~h 588 (704)
+|+|++.+..+.-... .+.....-..++.|....-..+.+.|+|||..|++-.. +-.|..|..
T Consensus 142 ~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~------------ 209 (447)
T KOG4497|consen 142 HPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYER------------ 209 (447)
T ss_pred CCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeee------------
Confidence 9999999988754222 22211222344555555667788999999998875321 222222221
Q ss_pred CceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCC
Q 005277 589 TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTT 654 (704)
Q Consensus 589 ~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~ 654 (704)
.-.+..+.| +|.+++|+.|+.|+.+||-+--+
T Consensus 210 ~lG~k~v~w----------------------------------sP~~qflavGsyD~~lrvlnh~t 241 (447)
T KOG4497|consen 210 GLGLKFVEW----------------------------------SPCNQFLAVGSYDQMLRVLNHFT 241 (447)
T ss_pred ccceeEEEe----------------------------------ccccceEEeeccchhhhhhceee
Confidence 235667788 99999999999999999866543
No 225
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=1.1e-12 Score=144.26 Aligned_cols=218 Identities=18% Similarity=0.126 Sum_probs=151.3
Q ss_pred EEeeCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCcc
Q 005277 346 TFINTHNGLNCASISQDGSLVAGGFSD---SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG 422 (704)
Q Consensus 346 ~~~~~~~~V~~~~fs~dg~~lasg~~d---g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 422 (704)
.+..+...+.+.+|+|||+.|+..+.+ ..|.+|++.+... ..+..+.+
T Consensus 198 ~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~-----------------------------~~l~~~~g 248 (433)
T PRK04922 198 TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR-----------------------------ELVASFRG 248 (433)
T ss_pred EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE-----------------------------EEeccCCC
Confidence 355677789999999999999988743 4689999865211 11222334
Q ss_pred CeEEEEEcCCCCEEE-EEeCCC--eEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeC-CCe--EEEEECCCCc
Q 005277 423 PVYSASFSPLGDFIL-SSSADT--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DRT--ARIWSMDRIQ 496 (704)
Q Consensus 423 ~V~~l~~sp~~~~l~-s~s~Dg--~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~-dg~--i~lwd~~~~~ 496 (704)
...+.+|+|||+.|+ +.+.+| .|.+||+.++.. ..+..+.......+|+|+|++++.++. +|. +.++++.+++
T Consensus 249 ~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~ 327 (433)
T PRK04922 249 INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS 327 (433)
T ss_pred CccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 455789999999775 555555 599999987764 445555555678899999998887763 444 6666776665
Q ss_pred eeEEeccCCCCeeEEEEcCCCCEEEEEECCC---cEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCC---Ce
Q 005277 497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDK---TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED---GT 570 (704)
Q Consensus 497 ~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg---~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~d---g~ 570 (704)
..+.. .+.......+|+|+|++|+..+.++ .|.+||+.+++... +. +........|+|||++|+..+.+ +.
T Consensus 328 ~~~lt-~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~-Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~ 404 (433)
T PRK04922 328 AERLT-FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRT-LT-PGSLDESPSFAPNGSMVLYATREGGRGV 404 (433)
T ss_pred eEEee-cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEE-CC-CCCCCCCceECCCCCEEEEEEecCCceE
Confidence 44433 2334455789999999998876443 59999998887653 32 22345567999999988876653 46
Q ss_pred EEEEeCCCCeeeeeecCCCceeeeeee
Q 005277 571 IMMWDLASGRCVTPLMGHTSCVWTLAY 597 (704)
Q Consensus 571 I~iwdl~~~~~~~~~~~h~~~V~sl~~ 597 (704)
|.++++. +.....+..+.+.+...+|
T Consensus 405 L~~~~~~-g~~~~~l~~~~g~~~~p~w 430 (433)
T PRK04922 405 LAAVSTD-GRVRQRLVSADGEVREPAW 430 (433)
T ss_pred EEEEECC-CCceEEcccCCCCCCCCcc
Confidence 8888885 4455556556666777777
No 226
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=7.2e-13 Score=145.31 Aligned_cols=218 Identities=17% Similarity=0.175 Sum_probs=148.5
Q ss_pred EeeCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC
Q 005277 347 FINTHNGLNCASISQDGSLVAGGFSD---SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (704)
Q Consensus 347 ~~~~~~~V~~~~fs~dg~~lasg~~d---g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 423 (704)
+..+...+.+.+|||||+.|+..+.+ ..|.+||+.+... ..+....+.
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~-----------------------------~~l~~~~g~ 241 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR-----------------------------RVVANFKGS 241 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE-----------------------------EEeecCCCC
Confidence 34567789999999999999987643 3589999875211 112223345
Q ss_pred eEEEEEcCCCCEEE-EEeCCCeEEEEeCCC-CceeEEeecCCcCeeEEEEcCCCCEEEEEeC-CCeEEEEEC--CCCcee
Q 005277 424 VYSASFSPLGDFIL-SSSADTTIRLWSTKL-NANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DRTARIWSM--DRIQPL 498 (704)
Q Consensus 424 V~~l~~sp~~~~l~-s~s~Dg~I~lwd~~~-~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~-dg~i~lwd~--~~~~~~ 498 (704)
+.+.+|+|||+.|+ +.+.+|...||.++. +.....+..+...+....|+|+|+.++..+. +|...+|.+ .++...
T Consensus 242 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~ 321 (427)
T PRK02889 242 NSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ 321 (427)
T ss_pred ccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE
Confidence 66889999999876 567788877775532 2334555556556678899999998876653 466666655 444433
Q ss_pred EEeccCCCCeeEEEEcCCCCEEEEEECCC---cEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCC---eEE
Q 005277 499 RIMAGHLSDVDCVRWHINCNYIATGSSDK---TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG---TIM 572 (704)
Q Consensus 499 ~~~~~~~~~V~~v~~~p~~~~l~tgs~dg---~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg---~I~ 572 (704)
+.. .+.......+|+|+|++|+..+.++ .|.+||+.++...... .+ .......|+|||+.|+.++.++ .+.
T Consensus 322 ~lt-~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt-~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~ 398 (427)
T PRK02889 322 RVT-FTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT-DT-TRDESPSFAPNGRYILYATQQGGRSVLA 398 (427)
T ss_pred EEe-cCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc-CC-CCccCceECCCCCEEEEEEecCCCEEEE
Confidence 332 2223345678999999999877654 5999999888765433 22 3346789999999988876544 466
Q ss_pred EEeCCCCeeeeeecCCCceeeeeee
Q 005277 573 MWDLASGRCVTPLMGHTSCVWTLAY 597 (704)
Q Consensus 573 iwdl~~~~~~~~~~~h~~~V~sl~~ 597 (704)
+.++ .+.....+..+.+.+...+|
T Consensus 399 ~~~~-~g~~~~~l~~~~g~~~~p~w 422 (427)
T PRK02889 399 AVSS-DGRIKQRLSVQGGDVREPSW 422 (427)
T ss_pred EEEC-CCCceEEeecCCCCCCCCcc
Confidence 6666 46566666666677777777
No 227
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=9.5e-13 Score=144.37 Aligned_cols=220 Identities=17% Similarity=0.177 Sum_probs=144.6
Q ss_pred ccCCccCeEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEE-EEeCCCeEEEEEC
Q 005277 417 YQGHSGPVYSASFSPLGDFILSSSAD---TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA-SSSHDRTARIWSM 492 (704)
Q Consensus 417 ~~~h~~~V~~l~~sp~~~~l~s~s~D---g~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~-sgs~dg~i~lwd~ 492 (704)
+..+...+.+.+|+|||+.|+.++.+ ..|.+||+.+++... +....+.+....|+|+|+.++ +.+.+|...||.+
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~ 269 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTV 269 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEE
Confidence 34567789999999999998876532 459999999886543 333345567899999999886 4567887677654
Q ss_pred --CCCceeEEeccCCCCeeEEEEcCCCCEEEEEEC-CCcEEEEe--CCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeC
Q 005277 493 --DRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-DKTVRLWD--VSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE 567 (704)
Q Consensus 493 --~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~-dg~I~iwd--~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~ 567 (704)
..+. .+.+..+........|+|+|+.|+..+. +|...+|. +.++...+.. .+.......+|+|||++|+..+.
T Consensus 270 d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-~~g~~~~~~~~SpDG~~Ia~~s~ 347 (427)
T PRK02889 270 NADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT-FTGSYNTSPRISPDGKLLAYISR 347 (427)
T ss_pred ECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe-cCCCCcCceEECCCCCEEEEEEc
Confidence 4443 4445555555677899999998887654 45656664 4455443322 23334456899999999987765
Q ss_pred CC---eEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCC
Q 005277 568 DG---TIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSAD 644 (704)
Q Consensus 568 dg---~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~D 644 (704)
++ .|.+||+.+++... +... .......| +|+|+.|+.++.+
T Consensus 348 ~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~----------------------------------spdg~~l~~~~~~ 391 (427)
T PRK02889 348 VGGAFKLYVQDLATGQVTA-LTDT-TRDESPSF----------------------------------APNGRYILYATQQ 391 (427)
T ss_pred cCCcEEEEEEECCCCCeEE-ccCC-CCccCceE----------------------------------CCCCCEEEEEEec
Confidence 54 69999998876543 3222 23356677 9999988877754
Q ss_pred C-c--EEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccC
Q 005277 645 C-T--VKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRR 691 (704)
Q Consensus 645 g-~--V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~ 691 (704)
+ . +.+.++.. .. ...+..+.+.+...+|+|-
T Consensus 392 ~g~~~l~~~~~~g-~~---------------~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 392 GGRSVLAAVSSDG-RI---------------KQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CCCEEEEEEECCC-Cc---------------eEEeecCCCCCCCCccCCC
Confidence 4 3 44444422 11 1223334456677788774
No 228
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.53 E-value=1e-12 Score=127.30 Aligned_cols=155 Identities=20% Similarity=0.412 Sum_probs=115.1
Q ss_pred EEEEEcCCCCEEEEEeC----------CCeEEEEeCCCC-ceeEEeec-CCcCeeEEEEcCCCCEEEEE--eCCCeEEEE
Q 005277 425 YSASFSPLGDFILSSSA----------DTTIRLWSTKLN-ANLVCYKG-HNYPVWDVQFNPQGHYFASS--SHDRTARIW 490 (704)
Q Consensus 425 ~~l~~sp~~~~l~s~s~----------Dg~I~lwd~~~~-~~~~~~~~-h~~~V~~v~~sp~~~~l~sg--s~dg~i~lw 490 (704)
..+.|+|+|++|+.-.. -|...+|.++.. ..+..+.- ..++|.+++|+|+|..|++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46789999998774322 134556655322 33333332 35579999999999987665 367799999
Q ss_pred ECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEEC---CCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeC
Q 005277 491 SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS---DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE 567 (704)
Q Consensus 491 d~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~---dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~ 567 (704)
|++ .+++..+. ...+..+.|+|+|++|++|+. .|.|.+||+++.+.+..+. | ..++.++|+|||++|+++..
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATT 163 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEe
Confidence 997 55666654 467889999999999999874 4679999999888887664 3 34789999999999999864
Q ss_pred ------CCeEEEEeCCCCeeeeee
Q 005277 568 ------DGTIMMWDLASGRCVTPL 585 (704)
Q Consensus 568 ------dg~I~iwdl~~~~~~~~~ 585 (704)
|+.++||+. .|+.+...
T Consensus 164 ~~r~~~dng~~Iw~~-~G~~l~~~ 186 (194)
T PF08662_consen 164 SPRLRVDNGFKIWSF-QGRLLYKK 186 (194)
T ss_pred ccceeccccEEEEEe-cCeEeEec
Confidence 788999997 46665543
No 229
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=8.3e-13 Score=137.76 Aligned_cols=272 Identities=13% Similarity=0.174 Sum_probs=187.4
Q ss_pred eeCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccC-----CCCCccceee-ccCC
Q 005277 348 INTHNGLNCASISQDGSLV-AGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG-----PNGRKRSYTL-YQGH 420 (704)
Q Consensus 348 ~~~~~~V~~~~fs~dg~~l-asg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-~~~h 420 (704)
+.+...-+.+..+|||+|+ |+|..-..|++||+......-............+..+..+ .......+.. ..-|
T Consensus 48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~h 127 (703)
T KOG2321|consen 48 FEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRH 127 (703)
T ss_pred cCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCee
Confidence 3455666788999999865 6788899999999987543222211100000000000000 0000000000 0001
Q ss_pred -----ccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 005277 421 -----SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI 495 (704)
Q Consensus 421 -----~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~ 495 (704)
...-..++++.-..-|++++....|.-++++.|..+..+....+.+++|..++-..+|++|+.+|.|-+||.+..
T Consensus 128 y~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~k 207 (703)
T KOG2321|consen 128 YRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDK 207 (703)
T ss_pred eeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhh
Confidence 122234555544444555555567888999999999999888899999999999999999999999999999887
Q ss_pred ceeEEec------cCCC-----CeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCC--CCEEEEEEecC--CC
Q 005277 496 QPLRIMA------GHLS-----DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR--SMILSLAMSPD--GR 560 (704)
Q Consensus 496 ~~~~~~~------~~~~-----~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~--~~i~~l~~spd--g~ 560 (704)
+.+..+. .|.+ .|+++.|+.+|-.+++|+.+|.|.|||+++.+++..- .|. -+|..+.|.+. +.
T Consensus 208 srv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~k-dh~~e~pi~~l~~~~~~~q~ 286 (703)
T KOG2321|consen 208 SRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVK-DHGYELPIKKLDWQDTDQQN 286 (703)
T ss_pred hhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeec-ccCCccceeeecccccCCCc
Confidence 6655543 2223 3999999999999999999999999999999887643 444 48999999875 44
Q ss_pred EEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEE
Q 005277 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLAS 640 (704)
Q Consensus 561 ~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~las 640 (704)
.+++. ....++|||-.+|+....+..-. .+..+++ -|++.++++
T Consensus 287 ~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~-~lND~C~----------------------------------~p~sGm~f~ 330 (703)
T KOG2321|consen 287 KVVSM-DKRILKIWDECTGKPMASIEPTS-DLNDFCF----------------------------------VPGSGMFFT 330 (703)
T ss_pred eEEec-chHHhhhcccccCCceeeccccC-CcCceee----------------------------------ecCCceEEE
Confidence 55554 45689999999999888776433 3666655 788899999
Q ss_pred EeCCCcEEEEeCCCCc
Q 005277 641 GSADCTVKLWDVTTST 656 (704)
Q Consensus 641 gs~Dg~V~iWd~~~~~ 656 (704)
+-.++.+..|=+..-.
T Consensus 331 Ane~~~m~~yyiP~LG 346 (703)
T KOG2321|consen 331 ANESSKMHTYYIPSLG 346 (703)
T ss_pred ecCCCcceeEEccccC
Confidence 9999998888776543
No 230
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=1.4e-12 Score=129.85 Aligned_cols=247 Identities=17% Similarity=0.230 Sum_probs=181.1
Q ss_pred EeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEE
Q 005277 347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (704)
Q Consensus 347 ~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 426 (704)
-..|...|.|++|.-..++|.+|..+|+|...|+.+..... +..-....+.|+.
T Consensus 101 ~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~--------------------------V~~~~~~~~~VY~ 154 (609)
T KOG4227|consen 101 EHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIY--------------------------VANENNNRGDVYH 154 (609)
T ss_pred cCccccceEEEEEccCCeeEecCCCcceeEeeecccceeee--------------------------eecccCcccceee
Confidence 35566889999999999999999999999999988622111 0111123469999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCce---eEEeecCCcCeeEEEEcC-CCCEEEEEeCCCeEEEEECCCCc-eeEEe
Q 005277 427 ASFSPLGDFILSSSADTTIRLWSTKLNAN---LVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQ-PLRIM 501 (704)
Q Consensus 427 l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~---~~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~lwd~~~~~-~~~~~ 501 (704)
+..+|..+.|++.+.+|.|.+||.+.... ....-........+.|+| ...++++.+..+-+.+||.+... ++...
T Consensus 155 m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~ 234 (609)
T KOG4227|consen 155 MDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQR 234 (609)
T ss_pred cccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhh
Confidence 99999999999999999999999986542 222233445677899999 55678899999999999997643 22221
Q ss_pred c---cC---CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCC-------CEEEEEEecCCCEEEEEeCC
Q 005277 502 A---GH---LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS-------MILSLAMSPDGRYMASGDED 568 (704)
Q Consensus 502 ~---~~---~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~-------~i~~l~~spdg~~l~sg~~d 568 (704)
. +- ...-.++.|+|+|+.+.+--....-.+||+-+.++.-.-..|.. .+.+++|.-| ..+++|+.+
T Consensus 235 ~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~ 313 (609)
T KOG4227|consen 235 SMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDD-YTVATGSDH 313 (609)
T ss_pred hccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecc-eeeeccCcc
Confidence 1 11 12235788999999998877666777889887554332223332 4667788744 459999999
Q ss_pred CeEEEEeCCCC-----------------------eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeE
Q 005277 569 GTIMMWDLASG-----------------------RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTI 625 (704)
Q Consensus 569 g~I~iwdl~~~-----------------------~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (704)
-.|++|.+... +.+..+++|.+.+..+.|
T Consensus 314 ~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF---------------------------- 365 (609)
T KOG4227|consen 314 WGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRF---------------------------- 365 (609)
T ss_pred cceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceee----------------------------
Confidence 99999987521 123456788888888888
Q ss_pred EeecccCCCCCEEEEEeCCCcEEEEeCCC
Q 005277 626 IYFGCASCEGSLLASGSADCTVKLWDVTT 654 (704)
Q Consensus 626 ~~~~~~s~~g~~lasgs~Dg~V~iWd~~~ 654 (704)
++...+|++.|-.+.++||.-..
T Consensus 366 ------~~H~~~l~SSGVE~~~KlWS~~r 388 (609)
T KOG4227|consen 366 ------SQHNNLLVSSGVENSFKLWSDHR 388 (609)
T ss_pred ------cCCcceEeccchhhheecccccc
Confidence 99999999999999999997543
No 231
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=4.4e-12 Score=139.70 Aligned_cols=216 Identities=13% Similarity=0.106 Sum_probs=150.4
Q ss_pred EeeCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC
Q 005277 347 FINTHNGLNCASISQDGSLVAGGFS---DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (704)
Q Consensus 347 ~~~~~~~V~~~~fs~dg~~lasg~~---dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 423 (704)
+..+...+.+.+|||||+.|+..+. +..|.+|++.+.. ...+..+.+.
T Consensus 197 lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~-----------------------------~~~l~~~~g~ 247 (435)
T PRK05137 197 LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ-----------------------------RELVGNFPGM 247 (435)
T ss_pred EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc-----------------------------EEEeecCCCc
Confidence 4567778999999999999988764 4679999986521 1223345567
Q ss_pred eEEEEEcCCCCEEE-EEeCCCe--EEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeC-CC--eEEEEECCCCce
Q 005277 424 VYSASFSPLGDFIL-SSSADTT--IRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DR--TARIWSMDRIQP 497 (704)
Q Consensus 424 V~~l~~sp~~~~l~-s~s~Dg~--I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~-dg--~i~lwd~~~~~~ 497 (704)
+.+.+|+|||+.|+ +.+.++. |.+||+.++.. ..+..+........|+|+|+.++..+. +| .|.+||+..+..
T Consensus 248 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~ 326 (435)
T PRK05137 248 TFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP 326 (435)
T ss_pred ccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe
Confidence 78899999999775 5566655 77778886654 445556666778999999998887763 33 688888877655
Q ss_pred eEEeccCCCCeeEEEEcCCCCEEEEEECC---CcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCC------
Q 005277 498 LRIMAGHLSDVDCVRWHINCNYIATGSSD---KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED------ 568 (704)
Q Consensus 498 ~~~~~~~~~~V~~v~~~p~~~~l~tgs~d---g~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~d------ 568 (704)
.+.. .+...+....|+|+|++|+..+.+ ..|.+||+.++.. +.+. ....+....|+|||+.|+..+.+
T Consensus 327 ~~lt-~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~ 403 (435)
T PRK05137 327 RRIS-FGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGA 403 (435)
T ss_pred EEee-cCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCc
Confidence 4443 344556778999999999887643 3588889865543 3343 23356788999999998775543
Q ss_pred CeEEEEeCCCCeeeeeecCCCceeeeeee
Q 005277 569 GTIMMWDLASGRCVTPLMGHTSCVWTLAY 597 (704)
Q Consensus 569 g~I~iwdl~~~~~~~~~~~h~~~V~sl~~ 597 (704)
..+.++|+..+.. ..+. ..+.+...+|
T Consensus 404 ~~L~~~dl~g~~~-~~l~-~~~~~~~p~W 430 (435)
T PRK05137 404 PKLYTVDLTGRNE-REVP-TPGDASDPAW 430 (435)
T ss_pred ceEEEEECCCCce-EEcc-CCCCccCccc
Confidence 3688888866544 3343 2334555666
No 232
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=1.4e-12 Score=130.74 Aligned_cols=205 Identities=17% Similarity=0.250 Sum_probs=163.5
Q ss_pred cCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc----eeEEeecCCcCeeEEEEcCCC-CEEEEEeCC--CeEEEE
Q 005277 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA----NLVCYKGHNYPVWDVQFNPQG-HYFASSSHD--RTARIW 490 (704)
Q Consensus 418 ~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~----~~~~~~~h~~~V~~v~~sp~~-~~l~sgs~d--g~i~lw 490 (704)
...+++|.++... +..|++|-.+|.+.+|....+. .+..+..+ ..+..+.-++.. ..+++||.. ..+.+|
T Consensus 102 ~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiw 178 (412)
T KOG3881|consen 102 SLGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIW 178 (412)
T ss_pred ccccccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeee
Confidence 3456777777766 4578888999999999988443 23333333 456677777744 456668888 889999
Q ss_pred ECCCCceeEEeccCC---------CCeeEEEEcCC--CCEEEEEECCCcEEEEeCCCC-cEEEEeecCCCCEEEEEEecC
Q 005277 491 SMDRIQPLRIMAGHL---------SDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSPD 558 (704)
Q Consensus 491 d~~~~~~~~~~~~~~---------~~V~~v~~~p~--~~~l~tgs~dg~I~iwd~~~~-~~~~~~~~h~~~i~~l~~spd 558 (704)
|+++.+++..-..-. -.++.+.|-|. ...|++++.-+.+|+||.+.+ +++..|.-...+++++...|.
T Consensus 179 dle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~ 258 (412)
T KOG3881|consen 179 DLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPS 258 (412)
T ss_pred ecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCC
Confidence 999875554332111 13567888887 889999999999999999865 578888778889999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeeeee-ecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCE
Q 005277 559 GRYMASGDEDGTIMMWDLASGRCVTP-LMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSL 637 (704)
Q Consensus 559 g~~l~sg~~dg~I~iwdl~~~~~~~~-~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 637 (704)
|+++++|..-|.+..+|++.++.... +.+..+.+.++.. +|.+.+
T Consensus 259 gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~----------------------------------hp~~~~ 304 (412)
T KOG3881|consen 259 GNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHC----------------------------------HPTHPV 304 (412)
T ss_pred CcEEEEecccchhheecccCceeeccccCCccCCcceEEE----------------------------------cCCCce
Confidence 99999999999999999999988776 7888999999988 899999
Q ss_pred EEEEeCCCcEEEEeCCCCcccc
Q 005277 638 LASGSADCTVKLWDVTTSTKVL 659 (704)
Q Consensus 638 lasgs~Dg~V~iWd~~~~~~~~ 659 (704)
++++|-|..|||+|+.+.+.+.
T Consensus 305 las~GLDRyvRIhD~ktrkll~ 326 (412)
T KOG3881|consen 305 LASCGLDRYVRIHDIKTRKLLH 326 (412)
T ss_pred EEeeccceeEEEeecccchhhh
Confidence 9999999999999999965443
No 233
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.47 E-value=9.6e-12 Score=121.68 Aligned_cols=227 Identities=16% Similarity=0.231 Sum_probs=159.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcC--eeEEEEcCCCCEEEE-EeCC------CeEEEEECC
Q 005277 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYP--VWDVQFNPQGHYFAS-SSHD------RTARIWSMD 493 (704)
Q Consensus 423 ~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~--V~~v~~sp~~~~l~s-gs~d------g~i~lwd~~ 493 (704)
...+++|+.|...+++|..+| .+||+.+..+....-..+.+. +..+-| ..++++. ||.+ +.+.|||-.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEecc
Confidence 345599999999888888776 999998864432222222222 222222 3445443 3332 579999966
Q ss_pred CCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC-CCcEEEEeecCCC--CEEEEEEecCCCEEEE-EeCCC
Q 005277 494 RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS-SGECVRIFIGHRS--MILSLAMSPDGRYMAS-GDEDG 569 (704)
Q Consensus 494 ~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~-~~~~~~~~~~h~~--~i~~l~~spdg~~l~s-g~~dg 569 (704)
..+++..+. ..++|.+|.+.++ .|++. ..+.|.+|... +-+.++.+....+ .+.+++-+.+..+||. |-.-|
T Consensus 84 k~~~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~G 159 (346)
T KOG2111|consen 84 KERCIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTG 159 (346)
T ss_pred cCcEEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccc
Confidence 667777665 5689999999765 45555 36789999987 4556665543332 2333333334445554 55679
Q ss_pred eEEEEeCCCCee--eeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCc-
Q 005277 570 TIMMWDLASGRC--VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCT- 646 (704)
Q Consensus 570 ~I~iwdl~~~~~--~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~- 646 (704)
.|.|-|+...+. -..+.+|.+.|.+++. +.+|.++||+|..|+
T Consensus 160 qvQi~dL~~~~~~~p~~I~AH~s~Iacv~L----------------------------------n~~Gt~vATaStkGTL 205 (346)
T KOG2111|consen 160 QVQIVDLASTKPNAPSIINAHDSDIACVAL----------------------------------NLQGTLVATASTKGTL 205 (346)
T ss_pred eEEEEEhhhcCcCCceEEEcccCceeEEEE----------------------------------cCCccEEEEeccCcEE
Confidence 999999987655 4678899999999998 899999999999997
Q ss_pred EEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 647 VKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 647 V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
|||||..+++.+.+.. -......|++++|||+..+||++|..||
T Consensus 206 IRIFdt~~g~~l~E~R-------------RG~d~A~iy~iaFSp~~s~LavsSdKgT 249 (346)
T KOG2111|consen 206 IRIFDTEDGTLLQELR-------------RGVDRADIYCIAFSPNSSWLAVSSDKGT 249 (346)
T ss_pred EEEEEcCCCcEeeeee-------------cCCchheEEEEEeCCCccEEEEEcCCCe
Confidence 8999999998754321 1234567999999999999999999887
No 234
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.47 E-value=9.2e-11 Score=125.05 Aligned_cols=296 Identities=15% Similarity=0.154 Sum_probs=175.7
Q ss_pred CEE-EEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCC
Q 005277 364 SLV-AGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSAD 442 (704)
Q Consensus 364 ~~l-asg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D 442 (704)
+++ ++-..+|.|.|.|..+. +....+......-..+.|+||++++++++.|
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~----------------------------~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rd 57 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATN----------------------------KVVARIPTGGAPHAGLKFSPDGRYLYVANRD 57 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-----------------------------SEEEEEE-STTEEEEEE-TT-SSEEEEEETT
T ss_pred cEEEEEecCCCEEEEEECCCC----------------------------eEEEEEcCCCCceeEEEecCCCCEEEEEcCC
Confidence 444 44556899999997652 2333333332334457899999999999999
Q ss_pred CeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEe-CCCeEEEEECCCCceeEEeccC-------CCCeeEEEEc
Q 005277 443 TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWSMDRIQPLRIMAGH-------LSDVDCVRWH 514 (704)
Q Consensus 443 g~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs-~dg~i~lwd~~~~~~~~~~~~~-------~~~V~~v~~~ 514 (704)
|.|.++|+.+.+.+..++... ...+++++++|+++++++ ..+.+.++|.++.++++.+... .+.+..+..+
T Consensus 58 g~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s 136 (369)
T PF02239_consen 58 GTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVAS 136 (369)
T ss_dssp SEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-
T ss_pred CeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEec
Confidence 999999999999999888654 457899999999988775 7899999999999998877532 3467788888
Q ss_pred CCCCEEEEEEC-CCcEEEEeCCCCcEEE-EeecCCCCEEEEEEecCCCEEEE-EeCCCeEEEEeCCCCeeeeeec----C
Q 005277 515 INCNYIATGSS-DKTVRLWDVSSGECVR-IFIGHRSMILSLAMSPDGRYMAS-GDEDGTIMMWDLASGRCVTPLM----G 587 (704)
Q Consensus 515 p~~~~l~tgs~-dg~I~iwd~~~~~~~~-~~~~h~~~i~~l~~spdg~~l~s-g~~dg~I~iwdl~~~~~~~~~~----~ 587 (704)
|....+++.-. .+.|.+.|....+.+. .............|+|+|+++++ ...++.|-++|..+++.+..+. .
T Consensus 137 ~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p 216 (369)
T PF02239_consen 137 PGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKP 216 (369)
T ss_dssp SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSB
T ss_pred CCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccc
Confidence 88886665554 4888888987654432 23334556788999999998766 4567799999999988776552 1
Q ss_pred CCc-----------eeeeeeee---eeehccccccccccccccce--eeeeeeEEeecccCCCCCEEEEE----eCCCcE
Q 005277 588 HTS-----------CVWTLAYR---FLLLVTNAYLKISDKVSTGF--LFYSLTIIYFGCASCEGSLLASG----SADCTV 647 (704)
Q Consensus 588 h~~-----------~V~sl~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~~g~~lasg----s~Dg~V 647 (704)
|.. ++|...-. .................... .+.......+...+|+++++.+. ...++|
T Consensus 217 ~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v 296 (369)
T PF02239_consen 217 HPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTV 296 (369)
T ss_dssp EETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-E
T ss_pred cccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceE
Confidence 222 22222110 00011111111111111000 00000011223349999999888 455899
Q ss_pred EEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277 648 KLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 702 (704)
Q Consensus 648 ~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg 702 (704)
.|+|..+.+.... +... ....+..+.|+++|..+..+..++
T Consensus 297 ~viD~~tl~~~~~------------i~~~--~~~~~~h~ef~~dG~~v~vS~~~~ 337 (369)
T PF02239_consen 297 QVIDKKTLKVVKT------------ITPG--PGKRVVHMEFNPDGKEVWVSVWDG 337 (369)
T ss_dssp EEEECCGTEEEE-------------HHHH--HT--EEEEEE-TTSSEEEEEEE--
T ss_pred EEEECcCcceeEE------------Eecc--CCCcEeccEECCCCCEEEEEEecC
Confidence 9999988643321 1111 122489999999999888777654
No 235
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.47 E-value=5.5e-12 Score=122.22 Aligned_cols=149 Identities=22% Similarity=0.408 Sum_probs=111.9
Q ss_pred eEEEEcCCCCEEEEEeC----------CCeEEEEECCC-CceeEEecc-CCCCeeEEEEcCCCCEEEEE--ECCCcEEEE
Q 005277 467 WDVQFNPQGHYFASSSH----------DRTARIWSMDR-IQPLRIMAG-HLSDVDCVRWHINCNYIATG--SSDKTVRLW 532 (704)
Q Consensus 467 ~~v~~sp~~~~l~sgs~----------dg~i~lwd~~~-~~~~~~~~~-~~~~V~~v~~~p~~~~l~tg--s~dg~I~iw 532 (704)
..+.|+|+|.+|++-.. -+...+|.++. ..++..+.- ..++|.+++|+|+|+.+++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46889999988765443 13345555532 234444432 34579999999999987654 467899999
Q ss_pred eCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeC---CCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccc
Q 005277 533 DVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE---DGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLK 609 (704)
Q Consensus 533 d~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~---dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~ 609 (704)
|++ ++.+..+ +...+..+.|+|+|++|++|+. .|.|.+||+++.+.+.... | ..+..+.|
T Consensus 89 d~~-~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~W------------ 151 (194)
T PF08662_consen 89 DVK-GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEW------------ 151 (194)
T ss_pred cCc-ccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEE------------
Confidence 996 6666666 3567889999999999999874 4679999999888887765 3 34678899
Q ss_pred cccccccceeeeeeeEEeecccCCCCCEEEEEeC------CCcEEEEeCCC
Q 005277 610 ISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSA------DCTVKLWDVTT 654 (704)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~------Dg~V~iWd~~~ 654 (704)
+|+|++|++++. |+.++||++..
T Consensus 152 ----------------------sPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 152 ----------------------SPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred ----------------------cCCCCEEEEEEeccceeccccEEEEEecC
Confidence 999999998874 78999999864
No 236
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.46 E-value=4.6e-12 Score=127.00 Aligned_cols=207 Identities=14% Similarity=0.238 Sum_probs=160.1
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcC
Q 005277 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (704)
Q Consensus 352 ~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 431 (704)
..|..++.. | ..|.+|-.+|.+.+|........ ......+..+ .++..+.-++
T Consensus 106 ~~I~gl~~~-d-g~Litc~~sG~l~~~~~k~~d~h------------------------ss~l~~la~g-~g~~~~r~~~ 158 (412)
T KOG3881|consen 106 KSIKGLKLA-D-GTLITCVSSGNLQVRHDKSGDLH------------------------SSKLIKLATG-PGLYDVRQTD 158 (412)
T ss_pred ccccchhhc-C-CEEEEEecCCcEEEEeccCCccc------------------------cccceeeecC-CceeeeccCC
Confidence 344444432 3 35777889999999998742111 0111222222 5677777777
Q ss_pred CCCEEE-EEeCC--CeEEEEeCCCCceeEEeecC-------CcC--eeEEEEcCC--CCEEEEEeCCCeEEEEECCCC-c
Q 005277 432 LGDFIL-SSSAD--TTIRLWSTKLNANLVCYKGH-------NYP--VWDVQFNPQ--GHYFASSSHDRTARIWSMDRI-Q 496 (704)
Q Consensus 432 ~~~~l~-s~s~D--g~I~lwd~~~~~~~~~~~~h-------~~~--V~~v~~sp~--~~~l~sgs~dg~i~lwd~~~~-~ 496 (704)
...+++ +|+.. ..+.+||+...+.+..-+.- .-| ++++.|-+. ...|++++.-+.+++||.+.+ +
T Consensus 159 ~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR 238 (412)
T KOG3881|consen 159 TDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRR 238 (412)
T ss_pred CCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCc
Confidence 666555 58887 78999999988665544321 123 457889887 888999999999999999864 5
Q ss_pred eeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEE-eecCCCCEEEEEEecCCCEEEEEeCCCeEEEEe
Q 005277 497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI-FIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD 575 (704)
Q Consensus 497 ~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~-~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwd 575 (704)
|+..+.-...+++++...|.++.|++|...|.+..||++.++.... +.+..+.|+++..+|.+++|+++|-|..++|+|
T Consensus 239 PV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD 318 (412)
T KOG3881|consen 239 PVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHD 318 (412)
T ss_pred ceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEee
Confidence 7888888889999999999999999999999999999999998776 788899999999999999999999999999999
Q ss_pred CCCCeeeeee
Q 005277 576 LASGRCVTPL 585 (704)
Q Consensus 576 l~~~~~~~~~ 585 (704)
+.+.+++...
T Consensus 319 ~ktrkll~kv 328 (412)
T KOG3881|consen 319 IKTRKLLHKV 328 (412)
T ss_pred cccchhhhhh
Confidence 9986665443
No 237
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.42 E-value=5.6e-11 Score=130.56 Aligned_cols=162 Identities=22% Similarity=0.215 Sum_probs=118.7
Q ss_pred ccCCccCeEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEE-EeCCC--eEEEE
Q 005277 417 YQGHSGPVYSASFSPLGDFILSSSAD---TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFAS-SSHDR--TARIW 490 (704)
Q Consensus 417 ~~~h~~~V~~l~~sp~~~~l~s~s~D---g~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s-gs~dg--~i~lw 490 (704)
+..+...+.+.+|+|+|++|+.++.+ ..|++||+.++.... +..+...+.+++|+|+|+.|+. .+.++ .|++|
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~ 263 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVM 263 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEE
Confidence 34466678899999999999876543 479999998875543 3345556778999999987764 44444 58889
Q ss_pred ECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECC-C--cEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeC
Q 005277 491 SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD-K--TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE 567 (704)
Q Consensus 491 d~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d-g--~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~ 567 (704)
++.++.... +..+........|+|+|+.|+..+.. + .|++||+.+++..+ +..+...+....|+|+|++|+.++.
T Consensus 264 d~~~~~~~~-l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~~~~~~~~~~~~spdg~~i~~~~~ 341 (417)
T TIGR02800 264 DLDGKQLTR-LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LTFRGGYNASPSWSPDGDLIAFVHR 341 (417)
T ss_pred ECCCCCEEE-CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccCeEECCCCCEEEEEEc
Confidence 998765433 34454555678999999988876643 3 58888988776544 4445566778899999999998887
Q ss_pred CC---eEEEEeCCCCee
Q 005277 568 DG---TIMMWDLASGRC 581 (704)
Q Consensus 568 dg---~I~iwdl~~~~~ 581 (704)
++ .|.+||+.++..
T Consensus 342 ~~~~~~i~~~d~~~~~~ 358 (417)
T TIGR02800 342 EGGGFNIAVMDLDGGGE 358 (417)
T ss_pred cCCceEEEEEeCCCCCe
Confidence 76 899999887643
No 238
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=1.4e-12 Score=133.70 Aligned_cols=241 Identities=20% Similarity=0.285 Sum_probs=174.4
Q ss_pred ceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEe---------------------------------
Q 005277 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY--------------------------------- 459 (704)
Q Consensus 413 ~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~--------------------------------- 459 (704)
....|.+|.|.|..+.|+..|..|++||.|..|.+||+..+.....+
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 44567889999999999999999999999999999998755433222
Q ss_pred ---------------ecCCcCeeEEEEcCCC-CEEEEEeCCCeEEEEECCCCceeEEec---cCCC---CeeEEEEcCC-
Q 005277 460 ---------------KGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRIQPLRIMA---GHLS---DVDCVRWHIN- 516 (704)
Q Consensus 460 ---------------~~h~~~V~~v~~sp~~-~~l~sgs~dg~i~lwd~~~~~~~~~~~---~~~~---~V~~v~~~p~- 516 (704)
..|.++|.-++.-|+. .-|.+++.|+.+.-+|++...+...+. .+.. ....++.+|.
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN 293 (559)
T ss_pred eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence 2356667777777743 447778888888888887765543332 2223 4567888884
Q ss_pred CCEEEEEECCCcEEEEeCCCCc------EEEEeecC------CCCEEEEEEecCCCEEEEEeCCCeEEEEeCCC--C---
Q 005277 517 CNYIATGSSDKTVRLWDVSSGE------CVRIFIGH------RSMILSLAMSPDGRYMASGDEDGTIMMWDLAS--G--- 579 (704)
Q Consensus 517 ~~~l~tgs~dg~I~iwd~~~~~------~~~~~~~h------~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~--~--- 579 (704)
.+.+++|+.|-.+++||.+.-. .+..|..| ...|+|++|+.+|.-|.++-.|-.|+++.-.. |
T Consensus 294 t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p 373 (559)
T KOG1334|consen 294 TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEP 373 (559)
T ss_pred ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCC
Confidence 5589999999999999987422 22333322 34699999998877677777777899995432 2
Q ss_pred -------eeeee-ecCCCc--eeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEE
Q 005277 580 -------RCVTP-LMGHTS--CVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKL 649 (704)
Q Consensus 580 -------~~~~~-~~~h~~--~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~i 649 (704)
..+.. ++||.. .|..+.| +.|...++++||.-|.|.|
T Consensus 374 ~~~s~~~~~~k~vYKGHrN~~TVKgVNF---------------------------------fGPrsEyVvSGSDCGhIFi 420 (559)
T KOG1334|consen 374 DPSSPREQYVKRVYKGHRNSRTVKGVNF---------------------------------FGPRSEYVVSGSDCGHIFI 420 (559)
T ss_pred CCCcchhhccchhhcccccccccceeee---------------------------------ccCccceEEecCccceEEE
Confidence 12222 677763 4555555 2788999999999999999
Q ss_pred EeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecC
Q 005277 650 WDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS 701 (704)
Q Consensus 650 Wd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~d 701 (704)
|+-.+++. +..+.+...-|.||.=+|--.+||+++-|
T Consensus 421 W~K~t~ei---------------i~~MegDr~VVNCLEpHP~~PvLAsSGid 457 (559)
T KOG1334|consen 421 WDKKTGEI---------------IRFMEGDRHVVNCLEPHPHLPVLASSGID 457 (559)
T ss_pred EecchhHH---------------HHHhhcccceEeccCCCCCCchhhccCCc
Confidence 99888754 44555555688899999999999988866
No 239
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=1.7e-11 Score=128.17 Aligned_cols=234 Identities=16% Similarity=0.221 Sum_probs=170.3
Q ss_pred CCccCeEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCcee---------EE-------------------eecCC------
Q 005277 419 GHSGPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANL---------VC-------------------YKGHN------ 463 (704)
Q Consensus 419 ~h~~~V~~l~~sp~~~~l~-s~s~Dg~I~lwd~~~~~~~---------~~-------------------~~~h~------ 463 (704)
+|+...+.|..+|||+|++ +|...-.|++||+..-... .. +.-|.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 5788889999999999866 7778889999998643210 00 01110
Q ss_pred -----cCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCc
Q 005277 464 -----YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE 538 (704)
Q Consensus 464 -----~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~ 538 (704)
..-.+++++.-..-+++++....|+-++++.++-+..+....+.+++|..++-..+|++|+.+|.|..||.++..
T Consensus 129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks 208 (703)
T KOG2321|consen 129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS 208 (703)
T ss_pred eeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhh
Confidence 122344555434446666667789999999999999998888999999999999999999999999999999877
Q ss_pred EEEEee------cCCC-----CEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeee-cCCCceeeeeeeeeeehcccc
Q 005277 539 CVRIFI------GHRS-----MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL-MGHTSCVWTLAYRFLLLVTNA 606 (704)
Q Consensus 539 ~~~~~~------~h~~-----~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~-~~h~~~V~sl~~~~~~~~~~~ 606 (704)
.+..+. .|.+ .|+++.|+.+|-.+++|+.+|.+.|||+++.+++..- .+...+|..+.|..
T Consensus 209 rv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~------- 281 (703)
T KOG2321|consen 209 RVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQD------- 281 (703)
T ss_pred hheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccc-------
Confidence 665543 2333 4999999999999999999999999999998876543 23346788888821
Q ss_pred ccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEE
Q 005277 607 YLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSL 686 (704)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l 686 (704)
..++..|+|.. ...++|||-.+++....+. ...++..+
T Consensus 282 -------------------------~~~q~~v~S~D-k~~~kiWd~~~Gk~~asiE----------------pt~~lND~ 319 (703)
T KOG2321|consen 282 -------------------------TDQQNKVVSMD-KRILKIWDECTGKPMASIE----------------PTSDLNDF 319 (703)
T ss_pred -------------------------cCCCceEEecc-hHHhhhcccccCCceeecc----------------ccCCcCce
Confidence 22344555554 4689999999887643221 12347777
Q ss_pred EEccCCcEEEEeecC
Q 005277 687 QFSRRNLLFAAGALS 701 (704)
Q Consensus 687 ~fs~~g~~La~gs~d 701 (704)
++-|++-++.+|-.+
T Consensus 320 C~~p~sGm~f~Ane~ 334 (703)
T KOG2321|consen 320 CFVPGSGMFFTANES 334 (703)
T ss_pred eeecCCceEEEecCC
Confidence 888877766666443
No 240
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.40 E-value=7.8e-11 Score=129.42 Aligned_cols=217 Identities=17% Similarity=0.132 Sum_probs=148.1
Q ss_pred EeeCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC
Q 005277 347 FINTHNGLNCASISQDGSLVAGGFSD---SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (704)
Q Consensus 347 ~~~~~~~V~~~~fs~dg~~lasg~~d---g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 423 (704)
+..+...+.+.+|||||++||.+..+ ..|.+|++.+.. ...+..+.+.
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~-----------------------------~~~~~~~~~~ 235 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ-----------------------------REKVASFPGM 235 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC-----------------------------EEEeecCCCC
Confidence 44566678999999999999988754 479999986521 1122234456
Q ss_pred eEEEEEcCCCCEEE-EEeCCC--eEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeC-CC--eEEEEECCCCce
Q 005277 424 VYSASFSPLGDFIL-SSSADT--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DR--TARIWSMDRIQP 497 (704)
Q Consensus 424 V~~l~~sp~~~~l~-s~s~Dg--~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~-dg--~i~lwd~~~~~~ 497 (704)
+.+++|+||++.|+ +.+.++ .|.+|++.++.. ..+..+........|+|+|+.++.++. ++ .|.+||+.+++.
T Consensus 236 ~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~ 314 (417)
T TIGR02800 236 NGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV 314 (417)
T ss_pred ccceEECCCCCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 67789999999776 444444 588889887654 334445555667899999998877654 33 578888877654
Q ss_pred eEEeccCCCCeeEEEEcCCCCEEEEEECCC---cEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCC---eE
Q 005277 498 LRIMAGHLSDVDCVRWHINCNYIATGSSDK---TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG---TI 571 (704)
Q Consensus 498 ~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg---~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg---~I 571 (704)
.+ +..+...+....|+|++++|+.++.++ .|.+||+.++.... +... .......|+|+|++|+.++.++ .+
T Consensus 315 ~~-l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l 391 (417)
T TIGR02800 315 RR-LTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTDT-GLDESPSFAPNGRMILYATTRGGRGVL 391 (417)
T ss_pred EE-eecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEeCCCcEEE
Confidence 43 343556677889999999999988776 79999998865433 3222 2345668999999888877654 45
Q ss_pred EEEeCCCCeeeeeecCCCceeeeeee
Q 005277 572 MMWDLASGRCVTPLMGHTSCVWTLAY 597 (704)
Q Consensus 572 ~iwdl~~~~~~~~~~~h~~~V~sl~~ 597 (704)
.+.+. +++....+..+.+.+..+.|
T Consensus 392 ~~~~~-~g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 392 GLVST-DGRFRARLPLGNGDVREPAW 416 (417)
T ss_pred EEEEC-CCceeeECCCCCCCcCCCCC
Confidence 55554 45555555544555555555
No 241
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=2.1e-10 Score=126.51 Aligned_cols=199 Identities=17% Similarity=0.150 Sum_probs=133.7
Q ss_pred ccCCccCeEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEE-EeCCC--eEEEE
Q 005277 417 YQGHSGPVYSASFSPLGDFILSSSAD---TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFAS-SSHDR--TARIW 490 (704)
Q Consensus 417 ~~~h~~~V~~l~~sp~~~~l~s~s~D---g~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s-gs~dg--~i~lw 490 (704)
+..+...+.+..|+|||+.|+..+.+ ..|.+|++.++.... +....+.+....|+|+|+.++. .+.+| .|.+|
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~ 272 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVM 272 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEE
Confidence 34566788999999999998866533 468999998776533 3333344567899999998874 44444 68888
Q ss_pred ECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEEC-CC--cEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeC
Q 005277 491 SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-DK--TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE 567 (704)
Q Consensus 491 d~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~-dg--~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~ 567 (704)
|++++...+ +..+........|+|+|+.|+..+. +| .|+++|+.+++..+... .........|+|||++|+..+.
T Consensus 273 d~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~~~~Spdg~~i~~~~~ 350 (430)
T PRK00178 273 DLASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNARPRLSADGKTLVMVHR 350 (430)
T ss_pred ECCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccceEECCCCCEEEEEEc
Confidence 998876543 4445555677899999998877654 33 58888888887544332 2233446789999999987664
Q ss_pred C-C--eEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCC
Q 005277 568 D-G--TIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSAD 644 (704)
Q Consensus 568 d-g--~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~D 644 (704)
+ + .|.+||+.+++... +. +........| +|+|++++..+.+
T Consensus 351 ~~~~~~l~~~dl~tg~~~~-lt-~~~~~~~p~~----------------------------------spdg~~i~~~~~~ 394 (430)
T PRK00178 351 QDGNFHVAAQDLQRGSVRI-LT-DTSLDESPSV----------------------------------APNGTMLIYATRQ 394 (430)
T ss_pred cCCceEEEEEECCCCCEEE-cc-CCCCCCCceE----------------------------------CCCCCEEEEEEec
Confidence 3 3 58889998875432 22 1112224456 9999988766643
Q ss_pred -C--cEEEEeCCC
Q 005277 645 -C--TVKLWDVTT 654 (704)
Q Consensus 645 -g--~V~iWd~~~ 654 (704)
| .|.++++..
T Consensus 395 ~g~~~l~~~~~~g 407 (430)
T PRK00178 395 QGRGVLMLVSING 407 (430)
T ss_pred CCceEEEEEECCC
Confidence 3 466666643
No 242
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=2e-10 Score=126.59 Aligned_cols=217 Identities=14% Similarity=0.101 Sum_probs=144.0
Q ss_pred EeeCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC
Q 005277 347 FINTHNGLNCASISQDGSLVAGGFSD---SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (704)
Q Consensus 347 ~~~~~~~V~~~~fs~dg~~lasg~~d---g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 423 (704)
+..+...+.+..|||||+.|+..+.+ ..|.+|++.+... ..+....+.
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~-----------------------------~~l~~~~g~ 244 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR-----------------------------EQITNFEGL 244 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE-----------------------------EEccCCCCC
Confidence 44566778999999999999877643 3588888765211 111122234
Q ss_pred eEEEEEcCCCCEEE-EEeCCC--eEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeC-C--CeEEEEECCCCce
Q 005277 424 VYSASFSPLGDFIL-SSSADT--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-D--RTARIWSMDRIQP 497 (704)
Q Consensus 424 V~~l~~sp~~~~l~-s~s~Dg--~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~-d--g~i~lwd~~~~~~ 497 (704)
+....|+|||+.|+ +.+.+| .|.+||+.++... .+..+........|+|+|+.++..+. + ..|.++++.+++.
T Consensus 245 ~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~ 323 (430)
T PRK00178 245 NGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA 323 (430)
T ss_pred cCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 55689999999877 555555 5888899876543 34445556677899999998776653 3 3577778877765
Q ss_pred eEEeccCCCCeeEEEEcCCCCEEEEEECCC---cEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCC---CeE
Q 005277 498 LRIMAGHLSDVDCVRWHINCNYIATGSSDK---TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED---GTI 571 (704)
Q Consensus 498 ~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg---~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~d---g~I 571 (704)
.+... .........|+|+|++|+..+.++ .|.+||+.++....... ........|+|||++++..+.+ ..|
T Consensus 324 ~~lt~-~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~--~~~~~~p~~spdg~~i~~~~~~~g~~~l 400 (430)
T PRK00178 324 ERVTF-VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTD--TSLDESPSVAPNGTMLIYATRQQGRGVL 400 (430)
T ss_pred EEeec-CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccC--CCCCCCceECCCCCEEEEEEecCCceEE
Confidence 44332 223344578999999998876532 48899998886543322 2223356899999998876643 357
Q ss_pred EEEeCCCCeeeeeecCCCceeeeeee
Q 005277 572 MMWDLASGRCVTPLMGHTSCVWTLAY 597 (704)
Q Consensus 572 ~iwdl~~~~~~~~~~~h~~~V~sl~~ 597 (704)
.++++. +.....+..+.+.+....|
T Consensus 401 ~~~~~~-g~~~~~l~~~~g~~~~p~w 425 (430)
T PRK00178 401 MLVSIN-GRVRLPLPTAQGEVREPSW 425 (430)
T ss_pred EEEECC-CCceEECcCCCCCcCCCcc
Confidence 777874 4444455555566677777
No 243
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=2.7e-10 Score=125.44 Aligned_cols=162 Identities=20% Similarity=0.204 Sum_probs=110.1
Q ss_pred ccCCccCeEEEEEcCCCCEEEEEeC-CC--eEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEE-EeCCCe--EEEE
Q 005277 417 YQGHSGPVYSASFSPLGDFILSSSA-DT--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFAS-SSHDRT--ARIW 490 (704)
Q Consensus 417 ~~~h~~~V~~l~~sp~~~~l~s~s~-Dg--~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s-gs~dg~--i~lw 490 (704)
+..+...+.+..|+|||+.|+..+. ++ .|.+||+.+++... +...........|+|+|+.++. .+.+|. |.+|
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~ 291 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVV 291 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEE
Confidence 3345678899999999998886543 33 58888998776432 2222333457899999998765 455664 7777
Q ss_pred ECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEEC-CC--cEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeC
Q 005277 491 SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-DK--TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE 567 (704)
Q Consensus 491 d~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~-dg--~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~ 567 (704)
|+++++..+ +..+.......+|+|+|+.|+..+. ++ .|+++|+.+++..+.. .........+|+|||++|+..+.
T Consensus 292 dl~tg~~~~-lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~~~~SpDG~~l~~~~~ 369 (448)
T PRK04792 292 DIATKALTR-ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLGGSITPDGRSMIMVNR 369 (448)
T ss_pred ECCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcCeeECCCCCEEEEEEe
Confidence 888765443 4445556678899999998877654 33 4777788877755432 22233445799999999887654
Q ss_pred -CC--eEEEEeCCCCee
Q 005277 568 -DG--TIMMWDLASGRC 581 (704)
Q Consensus 568 -dg--~I~iwdl~~~~~ 581 (704)
++ .|.++|+.+++.
T Consensus 370 ~~g~~~I~~~dl~~g~~ 386 (448)
T PRK04792 370 TNGKFNIARQDLETGAM 386 (448)
T ss_pred cCCceEEEEEECCCCCe
Confidence 33 466678877754
No 244
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=3.3e-10 Score=123.81 Aligned_cols=201 Identities=17% Similarity=0.170 Sum_probs=130.4
Q ss_pred CccCeEEEEEcCCCCE---EEEEeCCC--eEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeC-----CCeEEE
Q 005277 420 HSGPVYSASFSPLGDF---ILSSSADT--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-----DRTARI 489 (704)
Q Consensus 420 h~~~V~~l~~sp~~~~---l~s~s~Dg--~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~-----dg~i~l 489 (704)
....+.+-.|+|||+. ++++..+| .|.+.++.+++... +....+......|+|||+.|+..+. +..+.+
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~ 261 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQS 261 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCcceeEEE
Confidence 4455677899999974 23454444 57777888665433 2223444557899999998886652 234455
Q ss_pred EECCC---CceeEEeccCCCCeeEEEEcCCCCEEEEEE-CCCcEEEE--eCCC-CcEEEEeecCCCCEEEEEEecCCCEE
Q 005277 490 WSMDR---IQPLRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLW--DVSS-GECVRIFIGHRSMILSLAMSPDGRYM 562 (704)
Q Consensus 490 wd~~~---~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~I~iw--d~~~-~~~~~~~~~h~~~i~~l~~spdg~~l 562 (704)
|++.. +.+.+...++.......+|+|||+.|+..+ .+|...+| ++.. +.....+..+...+....|||||++|
T Consensus 262 ~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~L 341 (428)
T PRK01029 262 FSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKI 341 (428)
T ss_pred eecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEE
Confidence 77765 234444433334456789999999888765 45655555 4432 33344455555677889999999998
Q ss_pred EEEeCC---CeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEE
Q 005277 563 ASGDED---GTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLA 639 (704)
Q Consensus 563 ~sg~~d---g~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~la 639 (704)
+..+.+ ..|.+||+.+++... +......+.+..| +|+|+.|+
T Consensus 342 af~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~w----------------------------------SpDG~~L~ 386 (428)
T PRK01029 342 AFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSW----------------------------------AIDSLHLV 386 (428)
T ss_pred EEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEE----------------------------------CCCCCEEE
Confidence 876543 479999998886543 3322345566778 99999876
Q ss_pred EEeC---CCcEEEEeCCCCc
Q 005277 640 SGSA---DCTVKLWDVTTST 656 (704)
Q Consensus 640 sgs~---Dg~V~iWd~~~~~ 656 (704)
..+. .+.|.+||+..+.
T Consensus 387 f~~~~~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 387 YSAGNSNESELYLISLITKK 406 (428)
T ss_pred EEECCCCCceEEEEECCCCC
Confidence 5432 3568888887654
No 245
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.34 E-value=1.6e-09 Score=115.61 Aligned_cols=240 Identities=13% Similarity=0.138 Sum_probs=154.0
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCC
Q 005277 355 NCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGD 434 (704)
Q Consensus 355 ~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~ 434 (704)
..+.|+|||+++.+++.||.|.++|+.+.. ........ ....++++++||+
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~----------------------------~v~~i~~G-~~~~~i~~s~DG~ 90 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGK----------------------------VVATIKVG-GNPRGIAVSPDGK 90 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSS----------------------------EEEEEE-S-SEEEEEEE--TTT
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCccc----------------------------EEEEEecC-CCcceEEEcCCCC
Confidence 447799999999999999999999998632 22222222 3457899999999
Q ss_pred EEEEE-eCCCeEEEEeCCCCceeEEeecC-------CcCeeEEEEcCCCCEEEEEeC-CCeEEEEECCCCceeEE-eccC
Q 005277 435 FILSS-SADTTIRLWSTKLNANLVCYKGH-------NYPVWDVQFNPQGHYFASSSH-DRTARIWSMDRIQPLRI-MAGH 504 (704)
Q Consensus 435 ~l~s~-s~Dg~I~lwd~~~~~~~~~~~~h-------~~~V~~v~~sp~~~~l~sgs~-dg~i~lwd~~~~~~~~~-~~~~ 504 (704)
+++++ ...+++.++|..+.+.+..+... ...+..|..+|....++..-. .+.|-+.|......+.. ....
T Consensus 91 ~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~ 170 (369)
T PF02239_consen 91 YVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKV 170 (369)
T ss_dssp EEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE-
T ss_pred EEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecc
Confidence 98866 46899999999999988877543 346788888998886666655 48888888776554432 2223
Q ss_pred CCCeeEEEEcCCCCEEEEE-ECCCcEEEEeCCCCcEEEEe----------------------------------------
Q 005277 505 LSDVDCVRWHINCNYIATG-SSDKTVRLWDVSSGECVRIF---------------------------------------- 543 (704)
Q Consensus 505 ~~~V~~v~~~p~~~~l~tg-s~dg~I~iwd~~~~~~~~~~---------------------------------------- 543 (704)
........|+|+++|++++ ..+..|.++|..+++.+..+
T Consensus 171 g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~ 250 (369)
T PF02239_consen 171 GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDP 250 (369)
T ss_dssp -TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--T
T ss_pred cccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCc
Confidence 4456678999999988775 45667888888776554321
Q ss_pred ---------------ecCCCCEEEEEEecCCCEEEEE----eCCCeEEEEeCCCCeeeeeecCC-Cceeeeeeeeeeehc
Q 005277 544 ---------------IGHRSMILSLAMSPDGRYMASG----DEDGTIMMWDLASGRCVTPLMGH-TSCVWTLAYRFLLLV 603 (704)
Q Consensus 544 ---------------~~h~~~i~~l~~spdg~~l~sg----~~dg~I~iwdl~~~~~~~~~~~h-~~~V~sl~~~~~~~~ 603 (704)
....++ .-+..+|+++++.+. ...+.|.++|..+.+.+.++... ...+..+.|
T Consensus 251 v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef------ 323 (369)
T PF02239_consen 251 VSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEF------ 323 (369)
T ss_dssp TT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE------
T ss_pred cccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEE------
Confidence 111112 346678899988887 45578999999988777776422 234677777
Q ss_pred cccccccccccccceeeeeeeEEeecccCCCCCEEEEEeC--CCcEEEEeCCCCccc
Q 005277 604 TNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSA--DCTVKLWDVTTSTKV 658 (704)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~--Dg~V~iWd~~~~~~~ 658 (704)
+++|+.+..+.. +|.|.|||..+.+..
T Consensus 324 ----------------------------~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~ 352 (369)
T PF02239_consen 324 ----------------------------NPDGKEVWVSVWDGNGAIVVYDAKTLKEK 352 (369)
T ss_dssp -----------------------------TTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred ----------------------------CCCCCEEEEEEecCCCEEEEEECCCcEEE
Confidence 999997755543 347999999987653
No 246
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=9.1e-11 Score=125.15 Aligned_cols=284 Identities=17% Similarity=0.203 Sum_probs=197.7
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEE
Q 005277 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (704)
Q Consensus 350 ~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 429 (704)
.+....|++|+....++|+|+.||.++|..+.+........++. .......-+.+.||++.|.-+.|
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~gla-------------a~snLsmNQtLeGH~~sV~vvTW 79 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLA-------------AASNLSMNQTLEGHNASVMVVTW 79 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccc-------------cccccchhhhhccCcceEEEEEe
Confidence 34568999999999999999999999999987633222111110 11123345678999999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCceeEEe--ecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCC
Q 005277 430 SPLGDFILSSSADTTIRLWSTKLNANLVCY--KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD 507 (704)
Q Consensus 430 sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~--~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~ 507 (704)
+.+.+.|-++..+|.|.+|-+-.+.-...+ ....+.|.+++|+.+|..++..-.||.|.+=.++..+.-.. .-....
T Consensus 80 Ne~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgK-eLkg~~ 158 (1189)
T KOG2041|consen 80 NENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGK-ELKGQL 158 (1189)
T ss_pred ccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecch-hcchhe
Confidence 999999999999999999988766543222 22456789999999999999999999998888765432111 111223
Q ss_pred eeEEEEcCCCCEEEEEECCCcEEEEeCCCC-------cE-EE---EeecCCCCEEEEEEe--------cCCCEEEEEeCC
Q 005277 508 VDCVRWHINCNYIATGSSDKTVRLWDVSSG-------EC-VR---IFIGHRSMILSLAMS--------PDGRYMASGDED 568 (704)
Q Consensus 508 V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~-------~~-~~---~~~~h~~~i~~l~~s--------pdg~~l~sg~~d 568 (704)
...+.|++|...++.+-.+|.+.+||.... .+ +. .+......|-.+.|. ||...|+++-..
T Consensus 159 l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~n 238 (1189)
T KOG2041|consen 159 LAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYAN 238 (1189)
T ss_pred ccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcC
Confidence 457899999999999999999999997532 11 11 111122235556654 467789999999
Q ss_pred CeEEEEeCCCC-eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCC--
Q 005277 569 GTIMMWDLASG-RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADC-- 645 (704)
Q Consensus 569 g~I~iwdl~~~-~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg-- 645 (704)
|.+.|..-.+. .++-.-. .-.+....| +++|.+||.+|.|.
T Consensus 239 Gr~QiMR~eND~~Pvv~dt--gm~~vgakW----------------------------------nh~G~vLAvcG~~~da 282 (1189)
T KOG2041|consen 239 GRMQIMRSENDPEPVVVDT--GMKIVGAKW----------------------------------NHNGAVLAVCGNDSDA 282 (1189)
T ss_pred ceehhhhhcCCCCCeEEec--ccEeeccee----------------------------------cCCCcEEEEccCcccc
Confidence 98887643322 2222212 245667778 99999999998653
Q ss_pred -------cEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEee
Q 005277 646 -------TVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 699 (704)
Q Consensus 646 -------~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs 699 (704)
.|+++..-. ..+.++....+.|++++|-..|..+|.+.
T Consensus 283 ~~~~d~n~v~Fysp~G----------------~i~gtlkvpg~~It~lsWEg~gLriA~Av 327 (1189)
T KOG2041|consen 283 DEPTDSNKVHFYSPYG----------------HIVGTLKVPGSCITGLSWEGTGLRIAIAV 327 (1189)
T ss_pred cCccccceEEEeccch----------------hheEEEecCCceeeeeEEcCCceEEEEEe
Confidence 333332211 34567777888999999999998887664
No 247
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.34 E-value=3.6e-09 Score=112.77 Aligned_cols=236 Identities=14% Similarity=0.207 Sum_probs=154.4
Q ss_pred cCeEEEEEcCCCCEEEEEeC----CCeEEEEeCCCC-ce---eEEeecCCcCeeEEEEcCCCCEEEEEe-CCCeEEEEEC
Q 005277 422 GPVYSASFSPLGDFILSSSA----DTTIRLWSTKLN-AN---LVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWSM 492 (704)
Q Consensus 422 ~~V~~l~~sp~~~~l~s~s~----Dg~I~lwd~~~~-~~---~~~~~~h~~~V~~v~~sp~~~~l~sgs-~dg~i~lwd~ 492 (704)
.....++++|++++|+++.. +|.|..|.+... .. +............++++|++++++++. .+|++.++++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence 44567889999999998876 578999988764 22 333332344556899999999998887 5899999999
Q ss_pred CCC-ceeEE---ec----------cCCCCeeEEEEcCCCCEEEEEEC-CCcEEEEeCCCCc--EE--EEe-ecCCCCEEE
Q 005277 493 DRI-QPLRI---MA----------GHLSDVDCVRWHINCNYIATGSS-DKTVRLWDVSSGE--CV--RIF-IGHRSMILS 552 (704)
Q Consensus 493 ~~~-~~~~~---~~----------~~~~~V~~v~~~p~~~~l~tgs~-dg~I~iwd~~~~~--~~--~~~-~~h~~~i~~ 552 (704)
+.. ..... +. .......++.|+|+++++++... ...|++|++.... .. ..+ .......+.
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh 196 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH 196 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence 873 32221 11 12245678999999999988653 4579999997654 32 122 244567899
Q ss_pred EEEecCCCEEEEEe-CCCeEEEEeCC--CCee--eeeecCC----C--ceeeeeeeeeeehccccccccccccccceeee
Q 005277 553 LAMSPDGRYMASGD-EDGTIMMWDLA--SGRC--VTPLMGH----T--SCVWTLAYRFLLLVTNAYLKISDKVSTGFLFY 621 (704)
Q Consensus 553 l~~spdg~~l~sg~-~dg~I~iwdl~--~~~~--~~~~~~h----~--~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (704)
++|+|+|+++++.. .++.|.++++. ++.. +..+... . .....+.+
T Consensus 197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i------------------------ 252 (345)
T PF10282_consen 197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAI------------------------ 252 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE------------------------
T ss_pred EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEE------------------------
Confidence 99999999887654 57889999987 4422 1221111 1 12223333
Q ss_pred eeeEEeecccCCCCCEEEEEe-CCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeec
Q 005277 622 SLTIIYFGCASCEGSLLASGS-ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL 700 (704)
Q Consensus 622 ~~~~~~~~~~s~~g~~lasgs-~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~ 700 (704)
+|+|++|+++. .+++|.+|++..... .+..+..++........+.|+|+|++|+++..
T Consensus 253 ----------spdg~~lyvsnr~~~sI~vf~~d~~~g-----------~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~ 311 (345)
T PF10282_consen 253 ----------SPDGRFLYVSNRGSNSISVFDLDPATG-----------TLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQ 311 (345)
T ss_dssp -----------TTSSEEEEEECTTTEEEEEEECTTTT-----------TEEEEEEEEESSSSEEEEEE-TTSSEEEEEET
T ss_pred ----------ecCCCEEEEEeccCCEEEEEEEecCCC-----------ceEEEEEEeCCCCCccEEEEeCCCCEEEEEec
Confidence 99999886665 677899999954321 11334455554555789999999999998876
Q ss_pred CC
Q 005277 701 SK 702 (704)
Q Consensus 701 dg 702 (704)
+.
T Consensus 312 ~s 313 (345)
T PF10282_consen 312 DS 313 (345)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 248
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=3.1e-10 Score=125.03 Aligned_cols=216 Identities=15% Similarity=0.097 Sum_probs=139.3
Q ss_pred eeCCCCEEEEEEcCCCCEEEEEeC-CC--cEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCe
Q 005277 348 INTHNGLNCASISQDGSLVAGGFS-DS--SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (704)
Q Consensus 348 ~~~~~~V~~~~fs~dg~~lasg~~-dg--~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 424 (704)
..+...+.+..|||||+.|+..+. ++ .|.+||+.+... .....+ .+..
T Consensus 214 ~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~--------------------------~~lt~~---~g~~ 264 (448)
T PRK04792 214 LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR--------------------------EKVTSF---PGIN 264 (448)
T ss_pred ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe--------------------------EEecCC---CCCc
Confidence 344556789999999999987754 33 477777654211 111111 2233
Q ss_pred EEEEEcCCCCEEE-EEeCCCe--EEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeC-CC--eEEEEECCCCcee
Q 005277 425 YSASFSPLGDFIL-SSSADTT--IRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DR--TARIWSMDRIQPL 498 (704)
Q Consensus 425 ~~l~~sp~~~~l~-s~s~Dg~--I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~-dg--~i~lwd~~~~~~~ 498 (704)
...+|+|||+.|+ +.+.+|. |.+||+.+++. ..+..+.......+|+|+|+.++..+. ++ .|.++|+.+++..
T Consensus 265 ~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~ 343 (448)
T PRK04792 265 GAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS 343 (448)
T ss_pred CCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 4679999999876 4566665 77778876654 344445556678899999998876653 33 4666677776654
Q ss_pred EEeccCCCCeeEEEEcCCCCEEEEEECC-C--cEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCC-C--eEE
Q 005277 499 RIMAGHLSDVDCVRWHINCNYIATGSSD-K--TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED-G--TIM 572 (704)
Q Consensus 499 ~~~~~~~~~V~~v~~~p~~~~l~tgs~d-g--~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~d-g--~I~ 572 (704)
+... ........+|+|+|++|+..+.+ + .|.++|+.++.... +... .......|+|||+.|+..+.+ | .+.
T Consensus 344 ~Lt~-~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~ 420 (448)
T PRK04792 344 RLTF-EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLA 420 (448)
T ss_pred EEec-CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEE
Confidence 4322 22233457899999999876543 3 46667888876543 3222 122345899999988765543 3 477
Q ss_pred EEeCCCCeeeeeecCCCceeeeeee
Q 005277 573 MWDLASGRCVTPLMGHTSCVWTLAY 597 (704)
Q Consensus 573 iwdl~~~~~~~~~~~h~~~V~sl~~ 597 (704)
+++. +|+....+..+.+.+...+|
T Consensus 421 ~~~~-~G~~~~~l~~~~g~~~~p~W 444 (448)
T PRK04792 421 AVSI-DGRFKARLPAGQGEVKSPAW 444 (448)
T ss_pred EEEC-CCCceEECcCCCCCcCCCcc
Confidence 7786 56666666666666777777
No 249
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.33 E-value=1.2e-11 Score=143.36 Aligned_cols=196 Identities=20% Similarity=0.359 Sum_probs=162.4
Q ss_pred ccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeec-CCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 005277 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI 495 (704)
Q Consensus 417 ~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~-h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~ 495 (704)
...|-..|.++.=+|...+.+||+.||.|++|....++.+.+++. ....|+.+.|+.+|+-+..+..||.+.+|... .
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-p 2282 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-P 2282 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-C
Confidence 344557788888899999999999999999999999999888863 34789999999999999999999999999997 5
Q ss_pred ceeEEeccCCCCeeEEEEcCCCCEEEEEE---CCCcEEEEeCCC---CcEEEEeecCCCCEEEEEEecCCCEEEEEeCCC
Q 005277 496 QPLRIMAGHLSDVDCVRWHINCNYIATGS---SDKTVRLWDVSS---GECVRIFIGHRSMILSLAMSPDGRYMASGDEDG 569 (704)
Q Consensus 496 ~~~~~~~~~~~~V~~v~~~p~~~~l~tgs---~dg~I~iwd~~~---~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg 569 (704)
++....+.|......+.|-. ..+++++ .++.+.+||.-- ..++. +.|.+.++++++.|..+.|++||.+|
T Consensus 2283 k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G 2358 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKG 2358 (2439)
T ss_pred cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcC
Confidence 67777778888888888865 5566654 578899999742 23344 68999999999999999999999999
Q ss_pred eEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEE
Q 005277 570 TIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKL 649 (704)
Q Consensus 570 ~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~i 649 (704)
.|++||++..+.+.+++. + . ...++++|+..|.++|
T Consensus 2359 ~v~l~D~rqrql~h~~~~---------~----------------------------------~-~~~~f~~~ss~g~ikI 2394 (2439)
T KOG1064|consen 2359 EVCLFDIRQRQLRHTFQA---------L----------------------------------D-TREYFVTGSSEGNIKI 2394 (2439)
T ss_pred cEEEeehHHHHHHHHhhh---------h----------------------------------h-hhheeeccCcccceEE
Confidence 999999998887776653 2 3 4568999999999999
Q ss_pred EeCCCCcccccc
Q 005277 650 WDVTTSTKVLKT 661 (704)
Q Consensus 650 Wd~~~~~~~~~~ 661 (704)
|++.....+...
T Consensus 2395 w~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2395 WRLSEFGLLHTF 2406 (2439)
T ss_pred EEccccchhhcC
Confidence 999887554443
No 250
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.33 E-value=3e-11 Score=134.76 Aligned_cols=198 Identities=20% Similarity=0.335 Sum_probs=159.9
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCC----cCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 005277 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN----YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP 497 (704)
Q Consensus 422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~----~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~ 497 (704)
+.|....+..+...++.++.+..+.+||...+.......+.. .+..-+.++++.-++++|+.-+.|.+|+......
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~ 167 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK 167 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC
Confidence 344445555567788888888999999998766555444221 1233345677788999999999999999874443
Q ss_pred eEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEE-EeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 005277 498 LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVR-IFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576 (704)
Q Consensus 498 ~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~-~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl 576 (704)
-..+.+|.+.|..+.|+-+|.++++.|.|.++|+|++.+++... +.-+|...|..++|.|+ .+++++.|-+.++|+.
T Consensus 168 p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~ 245 (967)
T KOG0974|consen 168 PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV 245 (967)
T ss_pred cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEec
Confidence 34678999999999999999999999999999999999988766 55689999999999988 8999999999999975
Q ss_pred CCCeeeeeecCCC-ceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCC
Q 005277 577 ASGRCVTPLMGHT-SCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTS 655 (704)
Q Consensus 577 ~~~~~~~~~~~h~-~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~ 655 (704)
.+..+..+.+|. ..++.+.. ++....++|++.||.+++|++...
T Consensus 246 -~~~~l~~y~~h~g~~iw~~~~----------------------------------~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 246 -NGTQLEVYDEHSGKGIWKIAV----------------------------------PIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred -ccceehhhhhhhhcceeEEEE----------------------------------cCCceEEEeeccCcchhhhhhhcc
Confidence 455566888886 67888877 788889999999999999998764
Q ss_pred c
Q 005277 656 T 656 (704)
Q Consensus 656 ~ 656 (704)
.
T Consensus 291 ~ 291 (967)
T KOG0974|consen 291 G 291 (967)
T ss_pred c
Confidence 3
No 251
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.32 E-value=1.1e-10 Score=123.35 Aligned_cols=165 Identities=19% Similarity=0.260 Sum_probs=141.9
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCceeEEeecC---CcCeeEEEEc--------------------CCCCEEEEEeCCCeE
Q 005277 431 PLGDFILSSSADTTIRLWSTKLNANLVCYKGH---NYPVWDVQFN--------------------PQGHYFASSSHDRTA 487 (704)
Q Consensus 431 p~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h---~~~V~~v~~s--------------------p~~~~l~sgs~dg~i 487 (704)
|...+++..+.||.+++|+...++....|... .+..++..|. .+-..++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 44678999999999999999988776666431 2333344441 133567888899999
Q ss_pred EEEECCCCceeEEec--cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEE
Q 005277 488 RIWSMDRIQPLRIMA--GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG 565 (704)
Q Consensus 488 ~lwd~~~~~~~~~~~--~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg 565 (704)
.+|++..++....+. .|.+.|+++.++.+-..|.+++.|+.+..|+...++.++.+......+.+++++|||..+++|
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a 162 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA 162 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec
Confidence 999999998877775 699999999999999999999999999999999999999999999999999999999999988
Q ss_pred eCCCeEEEEeCCCCeeeeeecCCCceeeeeee
Q 005277 566 DEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY 597 (704)
Q Consensus 566 ~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~ 597 (704)
+ +.|++||+.+++.+.++.||.++|.++.|
T Consensus 163 s--~~ik~~~~~~kevv~~ftgh~s~v~t~~f 192 (541)
T KOG4547|consen 163 S--RQIKVLDIETKEVVITFTGHGSPVRTLSF 192 (541)
T ss_pred c--ceEEEEEccCceEEEEecCCCcceEEEEE
Confidence 6 57999999999999999999999999998
No 252
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.32 E-value=3.8e-10 Score=119.27 Aligned_cols=192 Identities=18% Similarity=0.193 Sum_probs=152.2
Q ss_pred cCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEE------c---
Q 005277 360 SQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF------S--- 430 (704)
Q Consensus 360 s~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~------s--- 430 (704)
.|-+.++|....||.++||+............ ...-++..++..| +
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p-------------------------~~~~s~t~~~~~w~L~~~~s~~k 56 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAP-------------------------IASLSGTCTYTKWGLSADYSPMK 56 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeecc-------------------------chhccCcceeEEEEEEeccchHH
Confidence 34578999999999999999876432211100 0011122222222 1
Q ss_pred -----------CCCCEEEEEeCCCeEEEEeCCCCceeEEee--cCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 005277 431 -----------PLGDFILSSSADTTIRLWSTKLNANLVCYK--GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP 497 (704)
Q Consensus 431 -----------p~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~--~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~ 497 (704)
-+...++-|...|.|.+|++..++....+. .|.++|.++.++.+-..|.+++.|+.+..|+......
T Consensus 57 ~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~ 136 (541)
T KOG4547|consen 57 WLSLEKAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI 136 (541)
T ss_pred HHhHHHHhhccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee
Confidence 233467889999999999999888877765 6899999999999999999999999999999999999
Q ss_pred eEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecC-----CCEEEE-EeCCCeE
Q 005277 498 LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD-----GRYMAS-GDEDGTI 571 (704)
Q Consensus 498 ~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spd-----g~~l~s-g~~dg~I 571 (704)
++.+......+.+++.+|||..+++++ +.|.+||+.+++.+..|.||.++|++++|.-+ |.++.+ ...+.-|
T Consensus 137 ~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i 214 (541)
T KOG4547|consen 137 IRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGI 214 (541)
T ss_pred eeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccce
Confidence 999999999999999999999999986 68999999999999999999999999999887 666554 4455567
Q ss_pred EEEeCCC
Q 005277 572 MMWDLAS 578 (704)
Q Consensus 572 ~iwdl~~ 578 (704)
.+|-+..
T Consensus 215 ~~w~v~~ 221 (541)
T KOG4547|consen 215 TVWVVEK 221 (541)
T ss_pred eEEEEEc
Confidence 7786654
No 253
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=5.5e-10 Score=122.08 Aligned_cols=217 Identities=14% Similarity=0.134 Sum_probs=136.3
Q ss_pred CCCCEEEEEEcCCCCEEE---EEeCCCc--EEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCe
Q 005277 350 THNGLNCASISQDGSLVA---GGFSDSS--LKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (704)
Q Consensus 350 ~~~~V~~~~fs~dg~~la---sg~~dg~--I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 424 (704)
....+.+-+|||||+.++ +...+|. |.+.++.+.. ...+.. ..+..
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~--------------------------~~~lt~---~~g~~ 233 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPA--------------------------GKKILA---LQGNQ 233 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCC--------------------------ceEeec---CCCCc
Confidence 445567889999997532 4545555 4455554311 112222 23445
Q ss_pred EEEEEcCCCCEEEEEeC-----CCeEEEEeCCCC---ceeEEeecCCcCeeEEEEcCCCCEEEEEe-CCCeEEEEE--CC
Q 005277 425 YSASFSPLGDFILSSSA-----DTTIRLWSTKLN---ANLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWS--MD 493 (704)
Q Consensus 425 ~~l~~sp~~~~l~s~s~-----Dg~I~lwd~~~~---~~~~~~~~h~~~V~~v~~sp~~~~l~sgs-~dg~i~lwd--~~ 493 (704)
...+|+|||+.|+..+. +..+.+|++..+ .......++.......+|+|||+.|+..+ .+|...+|. ++
T Consensus 234 ~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~ 313 (428)
T PRK01029 234 LMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQID 313 (428)
T ss_pred cceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECc
Confidence 56899999998885442 223455777653 22223333333456789999999877665 466555554 43
Q ss_pred C-CceeEEeccCCCCeeEEEEcCCCCEEEEEECC---CcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeC--
Q 005277 494 R-IQPLRIMAGHLSDVDCVRWHINCNYIATGSSD---KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE-- 567 (704)
Q Consensus 494 ~-~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d---g~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~-- 567 (704)
. +...+.+..+...+....|+|+|+.|+..+.+ ..|.+||+.+++..... .....+....|+|||++|+..+.
T Consensus 314 ~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-~~~~~~~~p~wSpDG~~L~f~~~~~ 392 (428)
T PRK01029 314 PEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT-TSPENKESPSWAIDSLHLVYSAGNS 392 (428)
T ss_pred ccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc-CCCCCccceEECCCCCEEEEEECCC
Confidence 2 23344444455667889999999999876543 46999999988765443 33445778999999998875433
Q ss_pred -CCeEEEEeCCCCeeeeeecCCCceeeeeee
Q 005277 568 -DGTIMMWDLASGRCVTPLMGHTSCVWTLAY 597 (704)
Q Consensus 568 -dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~ 597 (704)
.+.|.+||+.+++..... ...+.+...+|
T Consensus 393 g~~~L~~vdl~~g~~~~Lt-~~~g~~~~p~W 422 (428)
T PRK01029 393 NESELYLISLITKKTRKIV-IGSGEKRFPSW 422 (428)
T ss_pred CCceEEEEECCCCCEEEee-cCCCcccCcee
Confidence 357889999877654333 23344556666
No 254
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.30 E-value=4.1e-11 Score=133.65 Aligned_cols=195 Identities=24% Similarity=0.311 Sum_probs=153.4
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEE
Q 005277 357 ASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFI 436 (704)
Q Consensus 357 ~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l 436 (704)
..+..+...++.++.+..+.||+........... ...... -....-+-++++.-++
T Consensus 93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~--------------------~~er~~----l~~~~~~g~s~~~~~i 148 (967)
T KOG0974|consen 93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQ--------------------SDERCT----LYSSLIIGDSAEELYI 148 (967)
T ss_pred cchhhhcceEEEEEcCceEEEEecccCceehhcC--------------------CCceEE----EEeEEEEeccCcEEEE
Confidence 4555677889999999999999987521110000 000000 0122234456667789
Q ss_pred EEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeE-EeccCCCCeeEEEEcC
Q 005277 437 LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR-IMAGHLSDVDCVRWHI 515 (704)
Q Consensus 437 ~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~-~~~~~~~~V~~v~~~p 515 (704)
++|+.-+.|.+|+......-..+.+|.+.|.++.|+-+|+++++.|.|+++|+|++++.+... ..-+|...|..++|+|
T Consensus 149 ~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~ 228 (967)
T KOG0974|consen 149 ASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLP 228 (967)
T ss_pred EeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEecc
Confidence 999999999999998444444688999999999999999999999999999999999987766 5668999999999999
Q ss_pred CCCEEEEEECCCcEEEEeCCCCcEEEEeecCCC-CEEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 005277 516 NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS-MILSLAMSPDGRYMASGDEDGTIMMWDLAS 578 (704)
Q Consensus 516 ~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~-~i~~l~~spdg~~l~sg~~dg~I~iwdl~~ 578 (704)
+ ++++++.|-++++|+. .+..+..+.+|.+ .|..++..++...+++++.||.+++||+..
T Consensus 229 n--~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 229 N--RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred c--eeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 8 9999999999999976 4555557888865 689999999999999999999999999764
No 255
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.29 E-value=2.5e-10 Score=112.89 Aligned_cols=203 Identities=19% Similarity=0.356 Sum_probs=157.0
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEE
Q 005277 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (704)
Q Consensus 350 ~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 429 (704)
-..+++++.++++...|.+|..+|++.-+.+...- .+....+.+..|.+.|..+-|
T Consensus 67 mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedf------------------------nkm~~~r~~~~h~~~v~~~if 122 (404)
T KOG1409|consen 67 MPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDF------------------------NKMTFLKDYLAHQARVSAIVF 122 (404)
T ss_pred CCCCceEeeeeccceEEEEEEecceEEEEEhhhhh------------------------hhcchhhhhhhhhcceeeEEe
Confidence 45678999999999999999999999998876411 112344566789999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECC--CCceeEEeccCCCC
Q 005277 430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD--RIQPLRIMAGHLSD 507 (704)
Q Consensus 430 sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~--~~~~~~~~~~~~~~ 507 (704)
+-...++++.+.|..+.---.+.+..+..|.- ..+.+++.+.-. +...|...|.+.+..+. ...++..+.+|.+.
T Consensus 123 ~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~ 199 (404)
T KOG1409|consen 123 SLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGE 199 (404)
T ss_pred cCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccc
Confidence 99999999999998776555666655544432 112222222212 56667777777766553 45678889999999
Q ss_pred eeEEEEcCCCCEEEEEECCCcEEEEeCCCCcE-EEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCC
Q 005277 508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579 (704)
Q Consensus 508 V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~-~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~ 579 (704)
+.+++|.|....+++|..|..|.+||+.-++- .....+|...|..++..+--+.+++++.||.|.+|++...
T Consensus 200 ~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 200 VTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred eEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 99999999999999999999999999975433 3456689999999999888899999999999999998754
No 256
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.29 E-value=1.3e-08 Score=108.58 Aligned_cols=248 Identities=15% Similarity=0.220 Sum_probs=161.0
Q ss_pred eCCCCEEEEEEcCCCCEEEEEeC----CCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCe
Q 005277 349 NTHNGLNCASISQDGSLVAGGFS----DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (704)
Q Consensus 349 ~~~~~V~~~~fs~dg~~lasg~~----dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 424 (704)
........++++|++++|.+... +|.|..|.+..... ...............
T Consensus 34 ~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g------------------------~L~~~~~~~~~g~~p 89 (345)
T PF10282_consen 34 AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG------------------------TLTLLNSVPSGGSSP 89 (345)
T ss_dssp EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT------------------------EEEEEEEEEESSSCE
T ss_pred cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc------------------------eeEEeeeeccCCCCc
Confidence 34555677889999999988876 57899998875210 011111111122344
Q ss_pred EEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeEE----ee----------cCCcCeeEEEEcCCCCEEEEEe-CCCeEE
Q 005277 425 YSASFSPLGDFILSSS-ADTTIRLWSTKLNANLVC----YK----------GHNYPVWDVQFNPQGHYFASSS-HDRTAR 488 (704)
Q Consensus 425 ~~l~~sp~~~~l~s~s-~Dg~I~lwd~~~~~~~~~----~~----------~h~~~V~~v~~sp~~~~l~sgs-~dg~i~ 488 (704)
..++++|++++|+++. .+|+|.++++.....+.. +. .......++.|+|+|+++++.. ....|.
T Consensus 90 ~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~ 169 (345)
T PF10282_consen 90 CHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVY 169 (345)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred EEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEE
Confidence 5799999999999876 589999999987432221 11 1124577899999999888765 446799
Q ss_pred EEECCCCc--ee--EEe-ccCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCC--CCcE--EEEeec----C--CCCEEE
Q 005277 489 IWSMDRIQ--PL--RIM-AGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVS--SGEC--VRIFIG----H--RSMILS 552 (704)
Q Consensus 489 lwd~~~~~--~~--~~~-~~~~~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~--~~~~--~~~~~~----h--~~~i~~ 552 (704)
+|+++... .. ..+ ......-..+.|+|+++++++.. .+++|.++++. ++.. +..... . ......
T Consensus 170 ~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 249 (345)
T PF10282_consen 170 VYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAE 249 (345)
T ss_dssp EEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEE
T ss_pred EEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCcee
Confidence 99997654 21 122 23445678999999999987765 57789999988 4432 222211 1 125789
Q ss_pred EEEecCCCEEEEEe-CCCeEEEEeCC--CCe--eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEe
Q 005277 553 LAMSPDGRYMASGD-EDGTIMMWDLA--SGR--CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIY 627 (704)
Q Consensus 553 l~~spdg~~l~sg~-~dg~I~iwdl~--~~~--~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (704)
|+++|||++|+++. ..+.|.+|++. +++ .+..+......-..+.+
T Consensus 250 i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~------------------------------ 299 (345)
T PF10282_consen 250 IAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAF------------------------------ 299 (345)
T ss_dssp EEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE------------------------------
T ss_pred EEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEE------------------------------
Confidence 99999999988765 56789999983 232 22333322333455666
Q ss_pred ecccCCCCCEEEEEe-CCCcEEEEeCCC
Q 005277 628 FGCASCEGSLLASGS-ADCTVKLWDVTT 654 (704)
Q Consensus 628 ~~~~s~~g~~lasgs-~Dg~V~iWd~~~ 654 (704)
+|+|++|+++. .++.|.+|++..
T Consensus 300 ----s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 300 ----SPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp -----TTSSEEEEEETTTTEEEEEEEET
T ss_pred ----eCCCCEEEEEecCCCeEEEEEEeC
Confidence 99999998776 567999998853
No 257
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.26 E-value=6.1e-10 Score=110.16 Aligned_cols=247 Identities=17% Similarity=0.276 Sum_probs=182.6
Q ss_pred EeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEE
Q 005277 347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (704)
Q Consensus 347 ~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 426 (704)
+.+|.+.|+....-|...-+.+.+.|.+++||--.... .........-..++++
T Consensus 20 ~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~--------------------------q~wpsI~~~mP~~~~~ 73 (404)
T KOG1409|consen 20 IEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSG--------------------------QYWPSIYHYMPSPCSA 73 (404)
T ss_pred hcCchhhhhhheeccCCCCeEEccccceeeeEEecccc--------------------------ccCchhhhhCCCCceE
Confidence 45777778888887877789999999999999643211 0111122234578999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCC----CCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec
Q 005277 427 ASFSPLGDFILSSSADTTIRLWSTK----LNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA 502 (704)
Q Consensus 427 l~~sp~~~~l~s~s~Dg~I~lwd~~----~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~ 502 (704)
+.+.++...|+.|-..|++.-+.+. .....+.+..|..+|..+-|+....++++.+.|..+.---.+.+..+..+.
T Consensus 74 ~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~ 153 (404)
T KOG1409|consen 74 MEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN 153 (404)
T ss_pred eeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE
Confidence 9999999999999999999988654 345567778899999999999999999999998877655555554443222
Q ss_pred cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC--CCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCe
Q 005277 503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS--SGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR 580 (704)
Q Consensus 503 ~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~--~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~ 580 (704)
- ....+++.+.-. +.+.|...|.|.+-.+. .-..+..+.+|.+.+++++|.|..+.|.+|..|..+.+||+...+
T Consensus 154 ~-~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~ 230 (404)
T KOG1409|consen 154 F-ETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK 230 (404)
T ss_pred e-eccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCc
Confidence 1 011111111111 55667667776665543 456778899999999999999999999999999999999997654
Q ss_pred e-eeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCc
Q 005277 581 C-VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTST 656 (704)
Q Consensus 581 ~-~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~ 656 (704)
- ...+.+|...|..+.. -+--+.+++++.||.|.+|+++...
T Consensus 231 g~~~el~gh~~kV~~l~~----------------------------------~~~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 231 GTAYELQGHNDKVQALSY----------------------------------AQHTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred ceeeeeccchhhhhhhhh----------------------------------hhhheeeeeccCCCeEEEEecccee
Confidence 3 4567889988888876 5556789999999999999987644
No 258
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=3e-09 Score=111.68 Aligned_cols=264 Identities=16% Similarity=0.271 Sum_probs=166.1
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEc
Q 005277 351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (704)
Q Consensus 351 ~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 430 (704)
....+..++|++|+++|.+ .+..|+|++..... ...+. -...++++.|+
T Consensus 34 ~~~~~v~~~S~~G~lfA~~-~~~~v~i~~~~~~~---------------------------~~lt~---~~~~~~~L~fS 82 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYS-DNQVVKVFEIATLK---------------------------VVLCV---ELKKTYDLLFS 82 (566)
T ss_pred CCcceeEEEcCCCcEEEEE-cCCeEEEEEccCCc---------------------------EEEEe---ccceeeeeeec
Confidence 3446788999999998887 57789999876521 11111 11268999999
Q ss_pred CCCCEEEEE-----eCC-----CeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEE
Q 005277 431 PLGDFILSS-----SAD-----TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI 500 (704)
Q Consensus 431 p~~~~l~s~-----s~D-----g~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~ 500 (704)
|-+.+|.+- ..+ -.+.+|++.++.....+......-|+..|++|..+.+-- ..+.+.+|++...+.+..
T Consensus 83 P~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~~ 161 (566)
T KOG2315|consen 83 PKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQH 161 (566)
T ss_pred ccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhhhh-hcceEEEEecCCccceee
Confidence 999988652 222 347799999855554454333334788888887654332 336788888765332211
Q ss_pred eccCCCCeeEEEEcCC--CCEEEE-----EECCCcEEEEeCCC-------------------------------------
Q 005277 501 MAGHLSDVDCVRWHIN--CNYIAT-----GSSDKTVRLWDVSS------------------------------------- 536 (704)
Q Consensus 501 ~~~~~~~V~~v~~~p~--~~~l~t-----gs~dg~I~iwd~~~------------------------------------- 536 (704)
.-|...|+.+.++|. ...+|+ ++.-+.|+||.+.-
T Consensus 162 -kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdV 240 (566)
T KOG2315|consen 162 -KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDV 240 (566)
T ss_pred -eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEee
Confidence 123445555555543 122222 22334444444320
Q ss_pred -------------------CcEEEEeecCCCCEEEEEEecCCCEEEE--EeCCCeEEEEeCCCCeeeeeecCCCceeeee
Q 005277 537 -------------------GECVRIFIGHRSMILSLAMSPDGRYMAS--GDEDGTIMMWDLASGRCVTPLMGHTSCVWTL 595 (704)
Q Consensus 537 -------------------~~~~~~~~~h~~~i~~l~~spdg~~l~s--g~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl 595 (704)
|....+--...++|.++.|+|+|+-+++ |-.-.++.|+|++ +.++..+ ..++-.++
T Consensus 241 Dktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~ 317 (566)
T KOG2315|consen 241 DKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTA 317 (566)
T ss_pred cCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccce
Confidence 2222211234689999999999976554 5677889999986 4555444 24455566
Q ss_pred eeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeC---CCcEEEEeCCCCccccccccccCcccccc
Q 005277 596 AYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSA---DCTVKLWDVTTSTKVLKTEEKSGTNRLRS 672 (704)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~---Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~ 672 (704)
-| +|.|++|+.+|- -|.|-|||+.+.+.
T Consensus 318 ~f----------------------------------np~g~ii~lAGFGNL~G~mEvwDv~n~K~--------------- 348 (566)
T KOG2315|consen 318 FF----------------------------------NPHGNIILLAGFGNLPGDMEVWDVPNRKL--------------- 348 (566)
T ss_pred EE----------------------------------CCCCCEEEEeecCCCCCceEEEeccchhh---------------
Confidence 67 999999988874 48999999998543
Q ss_pred ccccCCCCcCeEEEEEccCCcEEEEeecC
Q 005277 673 LKTLPTKSTPVYSLQFSRRNLLFAAGALS 701 (704)
Q Consensus 673 l~~~~~~~~~V~~l~fs~~g~~La~gs~d 701 (704)
+..+.... -+-+.|+|||.++.+++..
T Consensus 349 i~~~~a~~--tt~~eW~PdGe~flTATTa 375 (566)
T KOG2315|consen 349 IAKFKAAN--TTVFEWSPDGEYFLTATTA 375 (566)
T ss_pred ccccccCC--ceEEEEcCCCcEEEEEecc
Confidence 34443333 3446999999999998754
No 259
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.25 E-value=4e-11 Score=139.27 Aligned_cols=197 Identities=14% Similarity=0.274 Sum_probs=159.4
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEE
Q 005277 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (704)
Q Consensus 350 ~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 429 (704)
+-..|.|+.=+|...+.++|+.||.|++|.+.... ..+..-.+-...|+.+.|
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~---------------------------~v~~~rt~g~s~vtr~~f 2259 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQ---------------------------QVVCFRTAGNSRVTRSRF 2259 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCC---------------------------eEEEeeccCcchhhhhhh
Confidence 34568888889999999999999999999986421 122222233378999999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEe---CCCeEEEEECCCCc-eeEEeccCC
Q 005277 430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS---HDRTARIWSMDRIQ-PLRIMAGHL 505 (704)
Q Consensus 430 sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs---~dg~i~lwd~~~~~-~~~~~~~~~ 505 (704)
+.+|+.+..+..||.+.+|... .+.....+.|.....++.|-. ..+++++ .++.+.+||..-.. .-.+...|.
T Consensus 2260 ~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~ 2336 (2439)
T KOG1064|consen 2260 NHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHD 2336 (2439)
T ss_pred cccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecC
Confidence 9999999999999999999998 677778889999999999974 6677765 67899999975422 112226899
Q ss_pred CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeee
Q 005277 506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL 585 (704)
Q Consensus 506 ~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~ 585 (704)
+.++++++-|..+.|++|+.+|.|++||++..+..+.+.. +. ...++++|+..|.|+||++.....+.++
T Consensus 2337 ~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2337 GGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred CCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcC
Confidence 9999999999999999999999999999998887776654 33 5678999999999999999888777666
Q ss_pred c
Q 005277 586 M 586 (704)
Q Consensus 586 ~ 586 (704)
.
T Consensus 2407 p 2407 (2439)
T KOG1064|consen 2407 P 2407 (2439)
T ss_pred c
Confidence 4
No 260
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=1.9e-09 Score=112.70 Aligned_cols=269 Identities=16% Similarity=0.211 Sum_probs=184.9
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCC
Q 005277 354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG 433 (704)
Q Consensus 354 V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~ 433 (704)
=+-+.|||.|.+|++--.-| |.+|-=.. ...++. ..|. .|.-+.|||+.
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~----------------------------f~r~~R-F~Hp-~Vq~idfSP~E 261 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGES----------------------------FDRIQR-FYHP-GVQFIDFSPNE 261 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCcc----------------------------HHHHHh-ccCC-CceeeecCCcc
Confidence 36789999999999987766 66885222 011111 1343 58889999999
Q ss_pred CEEEEEeC-----------CCeEEEEeCCCCceeEEeec--CCcCeeE-EEEcCCCCEEEEEeCCCeEEEEECCCCceeE
Q 005277 434 DFILSSSA-----------DTTIRLWSTKLNANLVCYKG--HNYPVWD-VQFNPQGHYFASSSHDRTARIWSMDRIQPLR 499 (704)
Q Consensus 434 ~~l~s~s~-----------Dg~I~lwd~~~~~~~~~~~~--h~~~V~~-v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~ 499 (704)
+||+|-+. ...++|||+.+|.....+.. ....+|. +.||.|++|+|.-.. .+|.||+.....++.
T Consensus 262 kYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld 340 (698)
T KOG2314|consen 262 KYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLD 340 (698)
T ss_pred ceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeec
Confidence 99998642 25799999999998887765 3344444 589999999998776 679999987755544
Q ss_pred EeccCCCCeeEEEEcCCCCEEEEEE-----CCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEe--------
Q 005277 500 IMAGHLSDVDCVRWHINCNYIATGS-----SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD-------- 566 (704)
Q Consensus 500 ~~~~~~~~V~~v~~~p~~~~l~tgs-----~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~-------- 566 (704)
.-.-..+.|....|+|.++.||.=+ .-..+.+-.+.+++.+++-.-|.-.=..+-|-.+|.+|+.--
T Consensus 341 ~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~ 420 (698)
T KOG2314|consen 341 KKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKV 420 (698)
T ss_pred ccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccc
Confidence 3334456788899999999998633 234678888888888887766665556677888898887522
Q ss_pred --CCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeC-
Q 005277 567 --EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSA- 643 (704)
Q Consensus 567 --~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~- 643 (704)
.-..+-|+.++....--..-.-...|...+| -|.|+.+++-+.
T Consensus 421 ~g~f~n~eIfrireKdIpve~velke~vi~FaW----------------------------------EP~gdkF~vi~g~ 466 (698)
T KOG2314|consen 421 KGQFSNLEIFRIREKDIPVEVVELKESVIAFAW----------------------------------EPHGDKFAVISGN 466 (698)
T ss_pred cceEeeEEEEEeeccCCCceeeecchheeeeee----------------------------------ccCCCeEEEEEcc
Confidence 1123445555443322111223456666777 888887766553
Q ss_pred --CCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecC
Q 005277 644 --DCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS 701 (704)
Q Consensus 644 --Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~d 701 (704)
..++.+|.+.+.. ..+.++..+.. ...+.|.|+|.|+++|+++.-
T Consensus 467 ~~k~tvsfY~~e~~~-----------~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~ 513 (698)
T KOG2314|consen 467 TVKNTVSFYAVETNI-----------KKPSLVKELDK--KFANTVFWSPKGRFVVVAALV 513 (698)
T ss_pred ccccceeEEEeecCC-----------Cchhhhhhhcc--cccceEEEcCCCcEEEEEEec
Confidence 3579999888522 12345566654 457889999999999998754
No 261
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.24 E-value=1.3e-09 Score=105.76 Aligned_cols=176 Identities=18% Similarity=0.239 Sum_probs=132.2
Q ss_pred ccCeEEEEEcC---CCC-EEEEEeCCCeEEEEeCCCCceeEEeecCC------cCeeEEEEcCCCCEEEEEeCCCeEEEE
Q 005277 421 SGPVYSASFSP---LGD-FILSSSADTTIRLWSTKLNANLVCYKGHN------YPVWDVQFNPQGHYFASSSHDRTARIW 490 (704)
Q Consensus 421 ~~~V~~l~~sp---~~~-~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~------~~V~~v~~sp~~~~l~sgs~dg~i~lw 490 (704)
+..+..+.|.. ++. .++-+..+|.|.++..........+++-. ....++.|++.+..++++..+|.+.+-
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v 148 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV 148 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence 34566777753 344 46677788999999877555544444321 124578899999999999999999966
Q ss_pred ECCCCc--eeEEeccCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCC-CCcEEEE-eecCCCCEEEEEEec-CCCEEEE
Q 005277 491 SMDRIQ--PLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVS-SGECVRI-FIGHRSMILSLAMSP-DGRYMAS 564 (704)
Q Consensus 491 d~~~~~--~~~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~I~iwd~~-~~~~~~~-~~~h~~~i~~l~~sp-dg~~l~s 564 (704)
+..... .++..++|........|+. +.+.+.+|+.|+.+..||+| .++.+.. .+.|...|.+|.-+| .+.++++
T Consensus 149 ~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~T 228 (339)
T KOG0280|consen 149 YETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIAT 228 (339)
T ss_pred ecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEE
Confidence 655443 3447788999999999985 45799999999999999999 4555544 457888999999887 5789999
Q ss_pred EeCCCeEEEEeCC-CCeeeeeecCCCceeeeeee
Q 005277 565 GDEDGTIMMWDLA-SGRCVTPLMGHTSCVWTLAY 597 (704)
Q Consensus 565 g~~dg~I~iwdl~-~~~~~~~~~~h~~~V~sl~~ 597 (704)
|+.|-.|++||.+ .++++..-. -.+.||.+.+
T Consensus 229 GsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~ 261 (339)
T KOG0280|consen 229 GSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKH 261 (339)
T ss_pred eccccceeeeehhcccCccccCc-cccceEEEEe
Confidence 9999999999998 566665443 3478998888
No 262
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.23 E-value=7.7e-10 Score=107.35 Aligned_cols=223 Identities=16% Similarity=0.165 Sum_probs=151.5
Q ss_pred CCCEEEEEEcC---CCC-EEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEE
Q 005277 351 HNGLNCASISQ---DGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (704)
Q Consensus 351 ~~~V~~~~fs~---dg~-~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 426 (704)
+..+..+.|+- +|. .++-+-.+|.|.++.............. ....-......+
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~l----------------------s~~ki~~~~~ls 126 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGL----------------------SSKKISVVEALS 126 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeeccc----------------------chhhhhheeeeE
Confidence 34456666652 455 5666677888888876542111110000 000000013467
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCce--eEEeecCCcCeeEEEEcC-CCCEEEEEeCCCeEEEEECCCCc-eeEE-e
Q 005277 427 ASFSPLGDFILSSSADTTIRLWSTKLNAN--LVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQ-PLRI-M 501 (704)
Q Consensus 427 l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~--~~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~lwd~~~~~-~~~~-~ 501 (704)
+.|++.+..++++-.+|.+.+-+...... ++..+.|..++|...|+. +.+.+.+|+.|+.+..||++... .+.. .
T Consensus 127 lD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~ 206 (339)
T KOG0280|consen 127 LDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNS 206 (339)
T ss_pred EEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecc
Confidence 88999999999999999998665554433 447889999999999987 55789999999999999999332 2222 3
Q ss_pred ccCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCC-CCcEEEEeecCCCCEEEEEEecC--CCEEEEEeCCCeEEEEeCC
Q 005277 502 AGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVS-SGECVRIFIGHRSMILSLAMSPD--GRYMASGDEDGTIMMWDLA 577 (704)
Q Consensus 502 ~~~~~~V~~v~~~p-~~~~l~tgs~dg~I~iwd~~-~~~~~~~~~~h~~~i~~l~~spd--g~~l~sg~~dg~I~iwdl~ 577 (704)
..|...|.++.-+| .+.+|+||+.|-.|++||.| -++++..- .-.+.|..+.++|. ++.|+++-..| .+|-+..
T Consensus 207 kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~-~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~ 284 (339)
T KOG0280|consen 207 KVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA-KVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSS 284 (339)
T ss_pred eeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC-ccccceEEEEecchhhhHHHHHHHhcC-ceEEEec
Confidence 46888999998885 68899999999999999999 46666543 23478999999994 44555555555 5666665
Q ss_pred CC--e---eeeeecCCCceeeeeee
Q 005277 578 SG--R---CVTPLMGHTSCVWTLAY 597 (704)
Q Consensus 578 ~~--~---~~~~~~~h~~~V~sl~~ 597 (704)
.+ + .......|.+-++.-.|
T Consensus 285 ~~~~e~~~~~~s~~~hdSl~YG~DW 309 (339)
T KOG0280|consen 285 DKVLEFQIVLPSDKIHDSLCYGGDW 309 (339)
T ss_pred ccccchheeeeccccccceeecccc
Confidence 43 2 33444667777777777
No 263
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.22 E-value=1.9e-11 Score=126.59 Aligned_cols=175 Identities=22% Similarity=0.329 Sum_probs=137.3
Q ss_pred ceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC-------CceeEEeecCCcCeeEEEEcCCCCEEEEEeCCC
Q 005277 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKL-------NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR 485 (704)
Q Consensus 413 ~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~-------~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg 485 (704)
....+.||...|..++--.+.+.+++++.|++|++|.++. ..+..+|..|+.+|.++.|-.+.++++++ ||
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 4566889999999988877788899999999999999863 34678899999999999999998888775 78
Q ss_pred eEEEEECCCCceeEEec--cCCCCeeEEEEcCC--CCEEEEE-ECCCcEEEEeCCCCcEEEEee-----cCCCCEEEEEE
Q 005277 486 TARIWSMDRIQPLRIMA--GHLSDVDCVRWHIN--CNYIATG-SSDKTVRLWDVSSGECVRIFI-----GHRSMILSLAM 555 (704)
Q Consensus 486 ~i~lwd~~~~~~~~~~~--~~~~~V~~v~~~p~--~~~l~tg-s~dg~I~iwd~~~~~~~~~~~-----~h~~~i~~l~~ 555 (704)
.+.+||.-.++++..+. ...+.+..+..-|+ ..++..| +...+|+++|.+.+.-+..++ +.++.+.+++.
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 99999987776665332 22233444444443 3444444 678999999999876554443 44567899999
Q ss_pred ecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCC
Q 005277 556 SPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT 589 (704)
Q Consensus 556 spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~ 589 (704)
.|.|+++++|-..|+|.+.|.++|+.+..++.-.
T Consensus 885 a~~GN~lAa~LSnGci~~LDaR~G~vINswrpme 918 (1034)
T KOG4190|consen 885 ADKGNKLAAALSNGCIAILDARNGKVINSWRPME 918 (1034)
T ss_pred ccCcchhhHHhcCCcEEEEecCCCceeccCCccc
Confidence 9999999999999999999999999888776443
No 264
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.20 E-value=5.2e-10 Score=108.93 Aligned_cols=213 Identities=21% Similarity=0.348 Sum_probs=147.7
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCC----------
Q 005277 351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH---------- 420 (704)
Q Consensus 351 ~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h---------- 420 (704)
.+.|+++.|...|.+||+|...|.|.+|.-..... -..+..+.+++|
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~-----------------------ceykf~teFQshe~EFDYLkSl 82 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYG-----------------------CEYKFFTEFQSHELEFDYLKSL 82 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccc-----------------------cchhhhhhhcccccchhhhhhc
Confidence 35689999999999999999999999997543110 001122333444
Q ss_pred --ccCeEEEEEcCCCC--EEEEEeCCCeEEEEeCCCCc-------------------e----------------------
Q 005277 421 --SGPVYSASFSPLGD--FILSSSADTTIRLWSTKLNA-------------------N---------------------- 455 (704)
Q Consensus 421 --~~~V~~l~~sp~~~--~l~s~s~Dg~I~lwd~~~~~-------------------~---------------------- 455 (704)
...|..+.|..++. .++..+.|.+|++|.+.... .
T Consensus 83 eieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~ 162 (460)
T COG5170 83 EIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAK 162 (460)
T ss_pred cHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEec
Confidence 24678889877653 46667789999999865220 0
Q ss_pred -eEEe-ecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCce---eEEeccCC-----CCeeEEEEcCC-CCEEEEEE
Q 005277 456 -LVCY-KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP---LRIMAGHL-----SDVDCVRWHIN-CNYIATGS 524 (704)
Q Consensus 456 -~~~~-~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~---~~~~~~~~-----~~V~~v~~~p~-~~~l~tgs 524 (704)
.+.+ ..|...|.++.|+.+...++++ .|=.|.+|+++-... +..+..|. .-|++..|||. ++.+...+
T Consensus 163 p~rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs 241 (460)
T COG5170 163 PCRVYANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS 241 (460)
T ss_pred cceeccccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec
Confidence 0112 3577889999999888888776 567899999875332 22233343 35788999995 67788888
Q ss_pred CCCcEEEEeCCCCcEE----------------EEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCC-eeeeeecC
Q 005277 525 SDKTVRLWDVSSGECV----------------RIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG-RCVTPLMG 587 (704)
Q Consensus 525 ~dg~I~iwd~~~~~~~----------------~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~-~~~~~~~~ 587 (704)
+.|.|++-|+|..... .-|.+-...|..+.|+++|+++++-+. -+|+|||.+.. .++.++.-
T Consensus 242 SkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~ 320 (460)
T COG5170 242 SKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPM 320 (460)
T ss_pred CCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeech
Confidence 9999999999843211 112233457889999999999987765 47999999864 56666655
Q ss_pred C
Q 005277 588 H 588 (704)
Q Consensus 588 h 588 (704)
|
T Consensus 321 h 321 (460)
T COG5170 321 H 321 (460)
T ss_pred H
Confidence 5
No 265
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.18 E-value=6.1e-08 Score=97.49 Aligned_cols=243 Identities=12% Similarity=0.163 Sum_probs=166.3
Q ss_pred ccCCccCeEEEEEcCCCCEEEEEeC---CCeEEEEeCCC--Ccee--EEeecCCcCeeEEEEcCCCCEEEEEe-CCCeEE
Q 005277 417 YQGHSGPVYSASFSPLGDFILSSSA---DTTIRLWSTKL--NANL--VCYKGHNYPVWDVQFNPQGHYFASSS-HDRTAR 488 (704)
Q Consensus 417 ~~~h~~~V~~l~~sp~~~~l~s~s~---Dg~I~lwd~~~--~~~~--~~~~~h~~~V~~v~~sp~~~~l~sgs-~dg~i~ 488 (704)
+..+.+.++-|+|+|++++|.++-. +|.|..|.++. |... ........+-+.++++++|++++++. ..|.|.
T Consensus 35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~ 114 (346)
T COG2706 35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVS 114 (346)
T ss_pred hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEE
Confidence 3456678889999999999998754 47788877774 3321 11112233447899999999998886 568999
Q ss_pred EEECCC-Ccee--EEeccCCCC----------eeEEEEcCCCCEEEEEEC-CCcEEEEeCCCCcEEEEe---ecCCCCEE
Q 005277 489 IWSMDR-IQPL--RIMAGHLSD----------VDCVRWHINCNYIATGSS-DKTVRLWDVSSGECVRIF---IGHRSMIL 551 (704)
Q Consensus 489 lwd~~~-~~~~--~~~~~~~~~----------V~~v~~~p~~~~l~tgs~-dg~I~iwd~~~~~~~~~~---~~h~~~i~ 551 (704)
++-++. +... .....|.+. +.+..+.|++++|++.+- --.|.+|++..|+....- .......+
T Consensus 115 v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPR 194 (346)
T COG2706 115 VYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPR 194 (346)
T ss_pred EEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcc
Confidence 999865 3221 112234444 788999999999998752 346999999977654321 13445678
Q ss_pred EEEEecCCCEEEEEe-CCCeEEEEeCCCC-eeeeeecCC-------Cceeeeeeeeeeehccccccccccccccceeeee
Q 005277 552 SLAMSPDGRYMASGD-EDGTIMMWDLASG-RCVTPLMGH-------TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYS 622 (704)
Q Consensus 552 ~l~~spdg~~l~sg~-~dg~I~iwdl~~~-~~~~~~~~h-------~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (704)
.|.|+|+|++.++.+ -+++|.+|..... ..+..++.+ .+..++.+.+
T Consensus 195 Hi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIh------------------------ 250 (346)
T COG2706 195 HIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIH------------------------ 250 (346)
T ss_pred eEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEE------------------------
Confidence 999999999887765 5889999998773 233333221 2222222221
Q ss_pred eeEEeecccCCCCCEEEEEe-CCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecC
Q 005277 623 LTIIYFGCASCEGSLLASGS-ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS 701 (704)
Q Consensus 623 ~~~~~~~~~s~~g~~lasgs-~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~d 701 (704)
++++|++|.++. ....|.+|.+...... +..+...+++...-..+.|++.|.+|+++.-+
T Consensus 251 --------is~dGrFLYasNRg~dsI~~f~V~~~~g~-----------L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~ 311 (346)
T COG2706 251 --------ISPDGRFLYASNRGHDSIAVFSVDPDGGK-----------LELVGITPTEGQFPRDFNINPSGRFLIAANQK 311 (346)
T ss_pred --------ECCCCCEEEEecCCCCeEEEEEEcCCCCE-----------EEEEEEeccCCcCCccceeCCCCCEEEEEccC
Confidence 199999998775 3458889988765432 23455666677767899999999999998876
Q ss_pred C
Q 005277 702 K 702 (704)
Q Consensus 702 g 702 (704)
+
T Consensus 312 s 312 (346)
T COG2706 312 S 312 (346)
T ss_pred C
Confidence 5
No 266
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=2.5e-10 Score=118.46 Aligned_cols=226 Identities=15% Similarity=0.235 Sum_probs=165.4
Q ss_pred CCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeec
Q 005277 338 ALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY 417 (704)
Q Consensus 338 ~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (704)
.+..+....|.+|.+.|..++--.+.+-+++++.|.+|++|++...+... +...+..++
T Consensus 722 n~~~irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~---------------------~tsaCQfTY 780 (1034)
T KOG4190|consen 722 NFDHIRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEI---------------------GTSACQFTY 780 (1034)
T ss_pred ccceeeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCcc---------------------ccceeeeEh
Confidence 44555566788999999998877777889999999999999997522111 112355678
Q ss_pred cCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee--cCCcCeeEEEEcC--CCCEEEEE-eCCCeEEEEEC
Q 005277 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK--GHNYPVWDVQFNP--QGHYFASS-SHDRTARIWSM 492 (704)
Q Consensus 418 ~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~--~h~~~V~~v~~sp--~~~~l~sg-s~dg~i~lwd~ 492 (704)
..|+.+|.++-|..+.++++++ ||.|.+||.--+..+..+. ...+.+..+..-| +...++.| +...+|+++|.
T Consensus 781 ~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~Da 858 (1034)
T KOG4190|consen 781 QAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDA 858 (1034)
T ss_pred hhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeec
Confidence 8999999999999988887765 7889999987776654332 1223344444444 34444444 68899999999
Q ss_pred CCCceeEEec-----cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeC
Q 005277 493 DRIQPLRIMA-----GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE 567 (704)
Q Consensus 493 ~~~~~~~~~~-----~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~ 567 (704)
+.......++ +...-+.|++..|.|+++++|-++|+|.+.|.++|+.+..+.........++- |..+.|+....
T Consensus 859 Rsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~sal 937 (1034)
T KOG4190|consen 859 RSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSAL 937 (1034)
T ss_pred ccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcc
Confidence 9877654443 44466899999999999999999999999999999998877665555544443 45667888888
Q ss_pred CCeEEE-EeCCCCeeeeeecC
Q 005277 568 DGTIMM-WDLASGRCVTPLMG 587 (704)
Q Consensus 568 dg~I~i-wdl~~~~~~~~~~~ 587 (704)
|.++.+ |-.-.|....+.+.
T Consensus 938 dHslaVnWhaldgimh~q~kp 958 (1034)
T KOG4190|consen 938 DHSLAVNWHALDGIMHLQDKP 958 (1034)
T ss_pred cceeEeeehhcCCeeeeccCC
Confidence 888888 88766655444443
No 267
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.11 E-value=5.7e-08 Score=116.87 Aligned_cols=264 Identities=14% Similarity=0.184 Sum_probs=158.8
Q ss_pred EEEEcCC-CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCC
Q 005277 356 CASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGD 434 (704)
Q Consensus 356 ~~~fs~d-g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~ 434 (704)
.++++++ +.++++-+.++.|++||........... .+..... .+.. -.++-....++++.++++
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~--~g~~G~~--------dG~~-----~~a~f~~P~GIavd~~gn 636 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGS--TGEEGLR--------DGSF-----EDATFNRPQGLAYNAKKN 636 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEcc--CCCcCCC--------CCch-----hccccCCCcEEEEeCCCC
Confidence 4678764 6677777888999999976421111000 0000000 0000 001223457899999888
Q ss_pred EEEEE-eCCCeEEEEeCCCCceeEEeecC-----------------CcCeeEEEEcC-CCCEEEEEeCCCeEEEEECCCC
Q 005277 435 FILSS-SADTTIRLWSTKLNANLVCYKGH-----------------NYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRI 495 (704)
Q Consensus 435 ~l~s~-s~Dg~I~lwd~~~~~~~~~~~~h-----------------~~~V~~v~~sp-~~~~l~sgs~dg~i~lwd~~~~ 495 (704)
.|+.+ +..+.|+++|..++. +.++.+- -...++++|+| ++..+++.+.++.|++||..++
T Consensus 637 ~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g 715 (1057)
T PLN02919 637 LLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDG 715 (1057)
T ss_pred EEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCC
Confidence 66655 445789999987654 3333210 11346899999 5667777778899999998775
Q ss_pred ceeEEeccC---------------CCCeeEEEEcCCCCEEE-EEECCCcEEEEeCCCCcEEEEeec-------------C
Q 005277 496 QPLRIMAGH---------------LSDVDCVRWHINCNYIA-TGSSDKTVRLWDVSSGECVRIFIG-------------H 546 (704)
Q Consensus 496 ~~~~~~~~~---------------~~~V~~v~~~p~~~~l~-tgs~dg~I~iwd~~~~~~~~~~~~-------------h 546 (704)
... .+.+. ......|+++|+++.|+ +.+.++.|++||+.++.......+ +
T Consensus 716 ~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~ 794 (1057)
T PLN02919 716 VTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDH 794 (1057)
T ss_pred eEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCC
Confidence 432 22211 12345799999998555 445678999999987653221100 0
Q ss_pred --------CCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccce
Q 005277 547 --------RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGF 618 (704)
Q Consensus 547 --------~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~ 618 (704)
-....+++++++|..+++-..++.|++||..++.... +.+....- +. ++. ...+.
T Consensus 795 dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~t-iaG~G~~G----~~------dG~------~~~a~ 857 (1057)
T PLN02919 795 DGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTT-LAGTGKAG----FK------DGK------ALKAQ 857 (1057)
T ss_pred CCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEE-EeccCCcC----CC------CCc------ccccc
Confidence 1134689999999988888899999999998776543 22211000 00 000 00000
Q ss_pred eeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcc
Q 005277 619 LFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTK 657 (704)
Q Consensus 619 ~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~ 657 (704)
. ..+.-.+++++|+++++-+.+++|++||+.++..
T Consensus 858 l----~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 858 L----SEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred c----CCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 0 0011112288999999999999999999988754
No 268
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.11 E-value=4.6e-08 Score=115.46 Aligned_cols=203 Identities=15% Similarity=0.203 Sum_probs=139.1
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEE
Q 005277 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (704)
Q Consensus 350 ~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 429 (704)
..+.|.++.+-++...++.+..+|.|.+...+... ..........-.+.|.+++|
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~-------------------------~~~~~E~VG~vd~GI~a~~W 128 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDP-------------------------DEDEIEIVGSVDSGILAASW 128 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCC-------------------------CCceeEEEEEEcCcEEEEEE
Confidence 34679999999999999999999999998433200 01111222224578999999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCC---------------C--------CceeEEeec------------------------C
Q 005277 430 SPLGDFILSSSADTTIRLWSTK---------------L--------NANLVCYKG------------------------H 462 (704)
Q Consensus 430 sp~~~~l~s~s~Dg~I~lwd~~---------------~--------~~~~~~~~~------------------------h 462 (704)
|||+..|+..+.++++.+.+.. . |+.-..|+| +
T Consensus 129 SPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~ 208 (928)
T PF04762_consen 129 SPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSW 208 (928)
T ss_pred CCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCcccc
Confidence 9999999999989998886532 0 011111111 1
Q ss_pred CcCeeEEEEcCCCCEEEEEeC------CCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEEC---CCcEEEEe
Q 005277 463 NYPVWDVQFNPQGHYFASSSH------DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS---DKTVRLWD 533 (704)
Q Consensus 463 ~~~V~~v~~sp~~~~l~sgs~------dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~---dg~I~iwd 533 (704)
...-..|+|-.||.|||+.+. -+.++||+-+ +.....-..-.+--.+++|.|+|++||+... ...|.+|.
T Consensus 209 dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE 287 (928)
T PF04762_consen 209 DDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE 287 (928)
T ss_pred CCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe
Confidence 223457899999999999874 2689999876 3333332222233457899999999998764 34566776
Q ss_pred CCCCcEEEEee----cCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCe
Q 005277 534 VSSGECVRIFI----GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR 580 (704)
Q Consensus 534 ~~~~~~~~~~~----~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~ 580 (704)
++|-....|. .....|..+.|++|+..||....|. |.+|-..+..
T Consensus 288 -rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH 336 (928)
T PF04762_consen 288 -RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH 336 (928)
T ss_pred -cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE
Confidence 4555444443 3356899999999999999987665 9999988764
No 269
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.10 E-value=3.2e-09 Score=105.05 Aligned_cols=230 Identities=21% Similarity=0.316 Sum_probs=152.9
Q ss_pred eCCCCEEEEEEcCCC--CEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCc----ccccCCCC---Cccce-eecc
Q 005277 349 NTHNGLNCASISQDG--SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPR----EDIIGPNG---RKRSY-TLYQ 418 (704)
Q Consensus 349 ~~~~~V~~~~fs~dg--~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~---~~~~~-~~~~ 418 (704)
.-...|+.+.|.+++ ..++..+.|.+|++|.+................+.... .....+.. ...+. ..-.
T Consensus 82 eieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aN 161 (433)
T KOG1354|consen 82 EIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYAN 161 (433)
T ss_pred hhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccc
Confidence 334567888888764 45667779999999998754322211000000000000 00000000 00111 1235
Q ss_pred CCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc---eeEEeecCC-----cCeeEEEEcC-CCCEEEEEeCCCeEEE
Q 005277 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA---NLVCYKGHN-----YPVWDVQFNP-QGHYFASSSHDRTARI 489 (704)
Q Consensus 419 ~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~---~~~~~~~h~-----~~V~~v~~sp-~~~~l~sgs~dg~i~l 489 (704)
+|+--|++++++.|...++++. |-.|.+|+++-.. .++.++.+. .-|++-.|+| ..+.|+-.+..|+|++
T Consensus 162 aHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL 240 (433)
T KOG1354|consen 162 AHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL 240 (433)
T ss_pred cceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence 7899999999999999888775 6789999987432 244455543 4588899999 5677888889999999
Q ss_pred EECCCCcee----------------EEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeC-CCCcEEEEeecCCC----
Q 005277 490 WSMDRIQPL----------------RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDV-SSGECVRIFIGHRS---- 548 (704)
Q Consensus 490 wd~~~~~~~----------------~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~-~~~~~~~~~~~h~~---- 548 (704)
.|++..... .-|.+-.+.|..+.|+++|+|+++-+ --+|++||+ ...+++.++.-|..
T Consensus 241 cDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~k 319 (433)
T KOG1354|consen 241 CDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSK 319 (433)
T ss_pred eechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHH
Confidence 999842211 11223335688899999999999864 368999999 46677777765532
Q ss_pred --------C---EEEEEEecCCCEEEEEeCCCeEEEEeCCCCe
Q 005277 549 --------M---ILSLAMSPDGRYMASGDEDGTIMMWDLASGR 580 (704)
Q Consensus 549 --------~---i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~ 580 (704)
. -..++|+.++.++++|+....++++++..|.
T Consensus 320 Lc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 320 LCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred HHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 1 2457899999999999999999999976654
No 270
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.08 E-value=1.5e-08 Score=105.24 Aligned_cols=283 Identities=14% Similarity=0.161 Sum_probs=183.0
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEc
Q 005277 351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (704)
Q Consensus 351 ~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 430 (704)
.-++..++|||.|.+|++....| |.+|.-.... ...+ + -| ..|+.+.|+
T Consensus 32 ~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~---------------------------~l~~-~-~~-~~V~~~~fS 80 (561)
T COG5354 32 NWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKA---------------------------KLVR-F-RH-PDVKYLDFS 80 (561)
T ss_pred CcchhheeecCcchheehhhccc-eEEccccchh---------------------------heee-e-ec-CCceecccC
Confidence 44688899999999999886555 7788744311 1111 1 12 468999999
Q ss_pred CCCCEEEEEeCCC---------------eEEEEeCCCCceeEEeecCCcC--ee-EEEEcCCCCEEEEEeCCCeEEEEEC
Q 005277 431 PLGDFILSSSADT---------------TIRLWSTKLNANLVCYKGHNYP--VW-DVQFNPQGHYFASSSHDRTARIWSM 492 (704)
Q Consensus 431 p~~~~l~s~s~Dg---------------~I~lwd~~~~~~~~~~~~h~~~--V~-~v~~sp~~~~l~sgs~dg~i~lwd~ 492 (704)
|.++||.+-+..+ .+.+||+.++..+..+.....+ .| -+.|+-+..|+|-. ....+.|+++
T Consensus 81 P~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~ 159 (561)
T COG5354 81 PNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI 159 (561)
T ss_pred cccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec
Confidence 9999999875543 4999999999999998877766 77 78999988887655 3467999996
Q ss_pred -CCCceeEEeccCCCCeeEEEEcCC--CCEEEE-----EECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEE
Q 005277 493 -DRIQPLRIMAGHLSDVDCVRWHIN--CNYIAT-----GSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMAS 564 (704)
Q Consensus 493 -~~~~~~~~~~~~~~~V~~v~~~p~--~~~l~t-----gs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s 564 (704)
.+..+.-.-.-....|....|+|. +..|++ ++.++.+++|.+..+..+.+-.-....-..+.|.+.|.+|.+
T Consensus 160 t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~ 239 (561)
T COG5354 160 TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLV 239 (561)
T ss_pred CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEE
Confidence 221111111112356788889985 344554 567889999999877766554333334457889999988764
Q ss_pred Ee-----------CCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCC
Q 005277 565 GD-----------EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASC 633 (704)
Q Consensus 565 g~-----------~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 633 (704)
-- ....+.|+++.. +-+.....-.++|....| .|
T Consensus 240 l~~t~~ksnKsyfgesnLyl~~~~e-~~i~V~~~~~~pVhdf~W----------------------------------~p 284 (561)
T COG5354 240 LVMTHTKSNKSYFGESNLYLLRITE-RSIPVEKDLKDPVHDFTW----------------------------------EP 284 (561)
T ss_pred EEEEeeecccceeccceEEEEeecc-cccceeccccccceeeee----------------------------------cc
Confidence 21 235688888763 333333355789999999 88
Q ss_pred CCCEEEEE--eCCCcEEEEeCCCCcccccccc-cc------CccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 634 EGSLLASG--SADCTVKLWDVTTSTKVLKTEE-KS------GTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 634 ~g~~lasg--s~Dg~V~iWd~~~~~~~~~~~~-~~------~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
.++.+++. -.+-++.++|+...- .....+ +. .......++.+....+. ...|+|-|+++++|..+++
T Consensus 285 ~S~~F~vi~g~~pa~~s~~~lr~Nl-~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gn--i~i~~~~~rf~~~~~~~~~ 360 (561)
T COG5354 285 LSSRFAVISGYMPASVSVFDLRGNL-RFYFPEQKRNTIFFSPHERYILFAGFDNLQGN--IEIFDPAGRFKVAGAFNGL 360 (561)
T ss_pred cCCceeEEecccccceeecccccce-EEecCCcccccccccCcccEEEEecCCccccc--eEEeccCCceEEEEEeecC
Confidence 87766544 477889999987752 111111 00 01111222223333333 3467777777777766654
No 271
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.07 E-value=2.6e-09 Score=114.30 Aligned_cols=238 Identities=12% Similarity=0.122 Sum_probs=170.5
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce---------------eEEeecCCcCeeEEEEcCCCCEEEEEeCCC
Q 005277 421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN---------------LVCYKGHNYPVWDVQFNPQGHYFASSSHDR 485 (704)
Q Consensus 421 ~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~---------------~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg 485 (704)
.....|++|+....++++|+.||.+++..+.+... -+++.||...|.-+.|+.+.+.+-+...+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 35678999999999999999999999998765321 245678999999999999999999999999
Q ss_pred eEEEEECCCCceeEEe--ccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEE
Q 005277 486 TARIWSMDRIQPLRIM--AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMA 563 (704)
Q Consensus 486 ~i~lwd~~~~~~~~~~--~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~ 563 (704)
.|.+|-+-.++-...+ ....+.|.+++|+.+|..|+....||.|.+=.+...+ +.--.-.......+.|++|.+.+.
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR-IwgKeLkg~~l~hv~ws~D~~~~L 172 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR-IWGKELKGQLLAHVLWSEDLEQAL 172 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce-ecchhcchheccceeecccHHHHH
Confidence 9999998776543322 2355779999999999999999999998777664332 221111122345789999999988
Q ss_pred EEeCCCeEEEEeCCCCeeeeee------------cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeeccc
Q 005277 564 SGDEDGTIMMWDLASGRCVTPL------------MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCA 631 (704)
Q Consensus 564 sg~~dg~I~iwdl~~~~~~~~~------------~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (704)
.+-..|.++++|.... ....+ ......+..+.|..... ...
T Consensus 173 f~~ange~hlydnqgn-F~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~--------------------------~~v 225 (1189)
T KOG2041|consen 173 FKKANGETHLYDNQGN-FERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPY--------------------------QPV 225 (1189)
T ss_pred hhhcCCcEEEeccccc-HHHhhhhceEEeeeeeecCCCccccceeeccCcc--------------------------ccC
Confidence 8889999999996532 11111 11112233444411100 011
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277 632 SCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 702 (704)
Q Consensus 632 s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg 702 (704)
.|+...++.+-..|.+.|-.-.+...+. +-.....|....|+++|.+||+++.+.
T Consensus 226 ~pdrP~lavcy~nGr~QiMR~eND~~Pv----------------v~dtgm~~vgakWnh~G~vLAvcG~~~ 280 (1189)
T KOG2041|consen 226 PPDRPRLAVCYANGRMQIMRSENDPEPV----------------VVDTGMKIVGAKWNHNGAVLAVCGNDS 280 (1189)
T ss_pred CCCCCEEEEEEcCceehhhhhcCCCCCe----------------EEecccEeecceecCCCcEEEEccCcc
Confidence 5688899999999999998766544321 112235688899999999999998764
No 272
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.07 E-value=6.9e-07 Score=90.05 Aligned_cols=250 Identities=12% Similarity=0.194 Sum_probs=161.9
Q ss_pred eCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277 349 NTHNGLNCASISQDGSLVAGGFS---DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (704)
Q Consensus 349 ~~~~~V~~~~fs~dg~~lasg~~---dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (704)
.+.+..+-++|+|++++|.++-. +|.|-.|.++....... ........+ .+-.
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt----------------------~ln~~~~~g--~~p~ 92 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLT----------------------FLNRQTLPG--SPPC 92 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEE----------------------EeeccccCC--CCCe
Confidence 34455677899999988887755 47788888775211000 000011112 2237
Q ss_pred EEEEcCCCCEEEEEeC-CCeEEEEeCCCCcee---EEeecCCcC----------eeEEEEcCCCCEEEEEe-CCCeEEEE
Q 005277 426 SASFSPLGDFILSSSA-DTTIRLWSTKLNANL---VCYKGHNYP----------VWDVQFNPQGHYFASSS-HDRTARIW 490 (704)
Q Consensus 426 ~l~~sp~~~~l~s~s~-Dg~I~lwd~~~~~~~---~~~~~h~~~----------V~~v~~sp~~~~l~sgs-~dg~i~lw 490 (704)
.+++++++++|+++.. -|.|.++-++....+ .....|.++ +....+.|+++++++.+ .--.|.+|
T Consensus 93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y 172 (346)
T COG2706 93 YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY 172 (346)
T ss_pred EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEE
Confidence 8999999999998764 588999988653222 222235444 88999999999999886 23468999
Q ss_pred ECCCCceeEEe---ccCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCC-cEEEEeec---------CCCCEEEEEEe
Q 005277 491 SMDRIQPLRIM---AGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSG-ECVRIFIG---------HRSMILSLAMS 556 (704)
Q Consensus 491 d~~~~~~~~~~---~~~~~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~-~~~~~~~~---------h~~~i~~l~~s 556 (704)
+++.+.....- ......-..|.|||++++..+.+ -+++|-+|..... ..+..++. ...+...|.++
T Consensus 173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis 252 (346)
T COG2706 173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHIS 252 (346)
T ss_pred EcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEEC
Confidence 99866533211 13445678899999999987765 5899999998763 22222211 23467889999
Q ss_pred cCCCEEEEEeC-CCeEEEEeCCC--Cee--eeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeeccc
Q 005277 557 PDGRYMASGDE-DGTIMMWDLAS--GRC--VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCA 631 (704)
Q Consensus 557 pdg~~l~sg~~-dg~I~iwdl~~--~~~--~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (704)
|||++|+++.. ...|.+|.+.. +++ +.....+...-....+
T Consensus 253 ~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i---------------------------------- 298 (346)
T COG2706 253 PDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNI---------------------------------- 298 (346)
T ss_pred CCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCcccee----------------------------------
Confidence 99999988642 23677776643 322 1122223333344444
Q ss_pred CCCCCEEEEEeCC-CcEEEEeCCCCc
Q 005277 632 SCEGSLLASGSAD-CTVKLWDVTTST 656 (704)
Q Consensus 632 s~~g~~lasgs~D-g~V~iWd~~~~~ 656 (704)
++.|++|++++.+ ..|.+|.++...
T Consensus 299 ~~~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 299 NPSGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred CCCCCEEEEEccCCCcEEEEEEcCCC
Confidence 8899999888754 579999887644
No 273
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.06 E-value=2e-07 Score=110.23 Aligned_cols=338 Identities=13% Similarity=0.099 Sum_probs=183.1
Q ss_pred eCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCC--------CCCc-ccccCCCCCc--------
Q 005277 349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGEND--------TTPR-EDIIGPNGRK-------- 411 (704)
Q Consensus 349 ~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~--------~~~~-~~~~~~~~~~-------- 411 (704)
.-..+|.|++||||+.+||..+.+|+|.+-+-+- .............+ .... ...-+..++.
T Consensus 118 ~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f-d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p 196 (928)
T PF04762_consen 118 SVDSGILAASWSPDEELLALVTGEGNLLLMTRDF-DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDP 196 (928)
T ss_pred EEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc-eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCC
Confidence 4467999999999999999999999987765321 10000000000000 0000 0000000000
Q ss_pred ----cceeeccCCccCeEEEEEcCCCCEEEEEeC---C---CeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEE
Q 005277 412 ----RSYTLYQGHSGPVYSASFSPLGDFILSSSA---D---TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS 481 (704)
Q Consensus 412 ----~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~---D---g~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sg 481 (704)
.....+. +...-..|+|-.||.++++++. . ..+|||+-+ |....+-..-.+--.+++|.|.|+++|+.
T Consensus 197 ~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~ 274 (928)
T PF04762_consen 197 TVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASS 274 (928)
T ss_pred CCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEE
Confidence 0001122 3445678999999999997764 3 479999987 54433333333334578999999999988
Q ss_pred eC---CCeEEEEECCCC---ceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEE--ee-cCCCCEEE
Q 005277 482 SH---DRTARIWSMDRI---QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI--FI-GHRSMILS 552 (704)
Q Consensus 482 s~---dg~i~lwd~~~~---~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~--~~-~h~~~i~~ 552 (704)
-. ...|.+|.-+.. +-.-.+......|..+.|++++..||....|. |.+|-..+..-... +. .....+..
T Consensus 275 q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~ 353 (928)
T PF04762_consen 275 QRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNF 353 (928)
T ss_pred EEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCc
Confidence 63 455666664332 21111223456799999999999999987655 99999877642211 11 22334556
Q ss_pred EEEecC-CCEEEEEeCCCeEEEEeCC----CCe--------eeeeecCCCceeeeeeeeeeehcccccccccccccccee
Q 005277 553 LAMSPD-GRYMASGDEDGTIMMWDLA----SGR--------CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFL 619 (704)
Q Consensus 553 l~~spd-g~~l~sg~~dg~I~iwdl~----~~~--------~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~ 619 (704)
+.|+|. ...|..++.+|.+..+++. .+. .+..+.|..--++.+....+. +.+. .+.
T Consensus 354 ~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VP----PPMs-------~~~ 422 (928)
T PF04762_consen 354 VKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVP----PPMS-------SYE 422 (928)
T ss_pred eEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCC----chHh-------ceE
Confidence 999994 5567777777777766543 111 122222222222211110000 0000 000
Q ss_pred eeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccccccccc-Cccc--cccccccCCCCcCeEEEEEccCCcEEE
Q 005277 620 FYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKS-GTNR--LRSLKTLPTKSTPVYSLQFSRRNLLFA 696 (704)
Q Consensus 620 ~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~-~~~~--~~~l~~~~~~~~~V~~l~fs~~g~~La 696 (704)
+.....+...++++++..+++-..||.|.+|............... .... .............+..+.|..++.+++
T Consensus 423 l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (928)
T PF04762_consen 423 LELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLV 502 (928)
T ss_pred EcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEE
Confidence 1111122333447777779999999999999966543221000000 0000 000111223355688889988887777
Q ss_pred EeecC
Q 005277 697 AGALS 701 (704)
Q Consensus 697 ~gs~d 701 (704)
....+
T Consensus 503 ~~~~~ 507 (928)
T PF04762_consen 503 LSDSD 507 (928)
T ss_pred EEecC
Confidence 76654
No 274
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.05 E-value=2.5e-09 Score=114.94 Aligned_cols=252 Identities=20% Similarity=0.293 Sum_probs=172.9
Q ss_pred CEEEEEEcCC--CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEc
Q 005277 353 GLNCASISQD--GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (704)
Q Consensus 353 ~V~~~~fs~d--g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 430 (704)
.|-.+.|||. -.+-++......-.||++.... .......+.||+..|+.+-|+
T Consensus 69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss-------------------------~~aIef~lhghsraitd~n~~ 123 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS-------------------------SNAIEFVLHGHSRAITDINFN 123 (1081)
T ss_pred hhcceecccCCCCceeEEecCcchhhhhhhhcCC-------------------------ccceEEEEecCccceeccccC
Confidence 4777888875 3344455555555689987521 123445678999999999999
Q ss_pred CCCC-EEEEEeCCCeEEEEeCCCCc-eeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceeEEeccCCCC
Q 005277 431 PLGD-FILSSSADTTIRLWSTKLNA-NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-QPLRIMAGHLSD 507 (704)
Q Consensus 431 p~~~-~l~s~s~Dg~I~lwd~~~~~-~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~-~~~~~~~~~~~~ 507 (704)
|+.. .+++++.|..+..||+++.. .+..+.........|+|+-....+.+.+..+.|++||++.+ .++..+++|...
T Consensus 124 ~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~ 203 (1081)
T KOG0309|consen 124 PQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSS 203 (1081)
T ss_pred CCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEeccccee
Confidence 9876 67799999999999999764 34445555566778999986666666778899999999875 467788899999
Q ss_pred eeEEEEcCC-CCEEEEEECCCcEEEEeCCCCc--EEEEeecCCCCEEEEEEecCCC--EEEEEeCCCeEEEEeC------
Q 005277 508 VDCVRWHIN-CNYIATGSSDKTVRLWDVSSGE--CVRIFIGHRSMILSLAMSPDGR--YMASGDEDGTIMMWDL------ 576 (704)
Q Consensus 508 V~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~--~~~~~~~h~~~i~~l~~spdg~--~l~sg~~dg~I~iwdl------ 576 (704)
|..+.|..- ...+.+.+.||+|..||..... .-+.. ....+|..-.+.|-|. ++.-.-.+..+.+++.
T Consensus 204 vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~v-tt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e 282 (1081)
T KOG0309|consen 204 VNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTV-TTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLE 282 (1081)
T ss_pred eehHHHhhhhhhhhcccCCCCceeeecccccccccceec-cccCcceeccccccCceeEeccccCCeeeeeccccchhhh
Confidence 999988753 4567888999999999986432 22222 2345566666666443 3322222224444433
Q ss_pred ---CC-CeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeC
Q 005277 577 ---AS-GRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDV 652 (704)
Q Consensus 577 ---~~-~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~ 652 (704)
.+ .+++..+.||+..|...-|+..-.....+ ....-.|+|-+.|..+++|-+
T Consensus 283 ~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~------------------------d~rdfQLVTWSkD~~lrlWpI 338 (1081)
T KOG0309|consen 283 WNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDY------------------------DSRDFQLVTWSKDQTLRLWPI 338 (1081)
T ss_pred hccccCCcceeeecCcchHHHHHhhhhcccccCCC------------------------CccceeEEEeecCCceEeeec
Confidence 32 36789999999999888773211100000 112347999999999999998
Q ss_pred CC
Q 005277 653 TT 654 (704)
Q Consensus 653 ~~ 654 (704)
.+
T Consensus 339 ~~ 340 (1081)
T KOG0309|consen 339 DS 340 (1081)
T ss_pred cH
Confidence 75
No 275
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=7.5e-08 Score=100.97 Aligned_cols=275 Identities=11% Similarity=0.142 Sum_probs=178.5
Q ss_pred CCCEEEEEEcCCCCEEEEEeCC-----------CcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccC
Q 005277 351 HNGLNCASISQDGSLVAGGFSD-----------SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG 419 (704)
Q Consensus 351 ~~~V~~~~fs~dg~~lasg~~d-----------g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (704)
+.+|.-+.|||+.++|++=+.. ..++|||+.++..... .....+
T Consensus 249 Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrs-------------------------F~~~~~ 303 (698)
T KOG2314|consen 249 HPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRS-------------------------FPVIKS 303 (698)
T ss_pred CCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcc-------------------------eeccCC
Confidence 3568889999999999986531 4689999987432221 111111
Q ss_pred CccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEe-----CCCeEEEEECCC
Q 005277 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-----HDRTARIWSMDR 494 (704)
Q Consensus 420 h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs-----~dg~i~lwd~~~ 494 (704)
....-.-..||.|+++++.-..| +|.|++..+...+-.-.-.-..|....|+|.++.+|--+ .-..+.+-.+.+
T Consensus 304 ~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs 382 (698)
T KOG2314|consen 304 PYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPS 382 (698)
T ss_pred CccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCc
Confidence 11122346899999999977765 699999876544332222345788999999988887543 223566777777
Q ss_pred CceeEEeccCCCCeeEEEEcCCCCEEEEEE----------CCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEE
Q 005277 495 IQPLRIMAGHLSDVDCVRWHINCNYIATGS----------SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMAS 564 (704)
Q Consensus 495 ~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs----------~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s 564 (704)
.+.++...-+.-.=..+-|..+|.+|+.-- .-..+.|+.++.....-....-...|...+|-|.|..+++
T Consensus 383 ~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~v 462 (698)
T KOG2314|consen 383 KREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAV 462 (698)
T ss_pred cceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEE
Confidence 777776665544444567778899998632 1123556666544332222345678999999999987776
Q ss_pred EeC---CCeEEEEeCCC-C---eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCE
Q 005277 565 GDE---DGTIMMWDLAS-G---RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSL 637 (704)
Q Consensus 565 g~~---dg~I~iwdl~~-~---~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 637 (704)
-+. ..++.+|-+.+ . +.+..+. ....+.+.| +|.|++
T Consensus 463 i~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfw----------------------------------sPkG~f 506 (698)
T KOG2314|consen 463 ISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFW----------------------------------SPKGRF 506 (698)
T ss_pred EEccccccceeEEEeecCCCchhhhhhhc--ccccceEEE----------------------------------cCCCcE
Confidence 443 35788888763 2 2233332 245567777 999999
Q ss_pred EEEEe---CCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277 638 LASGS---ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 702 (704)
Q Consensus 638 lasgs---~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg 702 (704)
++.+. ..|.+.++|....... ....+.| ...+.+-|.|.|+|+++++...
T Consensus 507 vvva~l~s~~g~l~F~D~~~a~~k--------------~~~~~eh-~~at~veWDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 507 VVVAALVSRRGDLEFYDTDYADLK--------------DTASPEH-FAATEVEWDPTGRYVVTSSSSW 559 (698)
T ss_pred EEEEEecccccceEEEecchhhhh--------------hccCccc-cccccceECCCCCEEEEeeehh
Confidence 87764 5789999998752210 1111222 2357789999999999998653
No 276
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=4.9e-08 Score=102.81 Aligned_cols=231 Identities=16% Similarity=0.257 Sum_probs=157.9
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCC
Q 005277 355 NCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGD 434 (704)
Q Consensus 355 ~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~ 434 (704)
.+..|+.|..+.| =-..+.|.+|++.... .... .-|...|..+.+||.+.
T Consensus 129 W~~qfs~dEsl~a-rlv~nev~f~~~~~f~---------------------------~~~~--kl~~~~i~~f~lSpgp~ 178 (566)
T KOG2315|consen 129 WVPQFSIDESLAA-RLVSNEVQFYDLGSFK---------------------------TIQH--KLSVSGITMLSLSPGPE 178 (566)
T ss_pred cccccccchhhhh-hhhcceEEEEecCCcc---------------------------ceee--eeeccceeeEEecCCCC
Confidence 6889999876443 3346789999976511 1111 12567788899988643
Q ss_pred --EEEE-----EeCCCeEEEEeCCCCce--eEEeec-CCcCeeEEEEcCCCCEE-EEE--eC---------CCeEEEEEC
Q 005277 435 --FILS-----SSADTTIRLWSTKLNAN--LVCYKG-HNYPVWDVQFNPQGHYF-ASS--SH---------DRTARIWSM 492 (704)
Q Consensus 435 --~l~s-----~s~Dg~I~lwd~~~~~~--~~~~~~-h~~~V~~v~~sp~~~~l-~sg--s~---------dg~i~lwd~ 492 (704)
.+++ .+.-+.|+||....... ....+. ....=..+.|++-|.-| +.+ .- ..++++.++
T Consensus 179 ~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t 258 (566)
T KOG2315|consen 179 PPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLAT 258 (566)
T ss_pred CceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEe
Confidence 3442 35667899998762211 111111 12223367888866532 222 22 347888888
Q ss_pred CCCceeEEeccCCCCeeEEEEcCCCCEEEE--EECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeC---
Q 005277 493 DRIQPLRIMAGHLSDVDCVRWHINCNYIAT--GSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE--- 567 (704)
Q Consensus 493 ~~~~~~~~~~~~~~~V~~v~~~p~~~~l~t--gs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~--- 567 (704)
+.......+ ...++|.++.|+|++..+++ |-+-.++.|||++ ++++..+ ..++-.++-|+|.|++|+.+|-
T Consensus 259 ~g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL 334 (566)
T KOG2315|consen 259 QGESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNL 334 (566)
T ss_pred cCceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCC
Confidence 843333333 35789999999999987765 6678899999985 5555555 4567789999999999988775
Q ss_pred CCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeC----
Q 005277 568 DGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSA---- 643 (704)
Q Consensus 568 dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~---- 643 (704)
.|.|-|||+.+.+++..+..-... -..| +|||.+++|++.
T Consensus 335 ~G~mEvwDv~n~K~i~~~~a~~tt--~~eW----------------------------------~PdGe~flTATTaPRl 378 (566)
T KOG2315|consen 335 PGDMEVWDVPNRKLIAKFKAANTT--VFEW----------------------------------SPDGEYFLTATTAPRL 378 (566)
T ss_pred CCceEEEeccchhhccccccCCce--EEEE----------------------------------cCCCcEEEEEeccccE
Confidence 489999999998888887755443 3567 999999998874
Q ss_pred --CCcEEEEeCCCC
Q 005277 644 --DCTVKLWDVTTS 655 (704)
Q Consensus 644 --Dg~V~iWd~~~~ 655 (704)
|+.++||++...
T Consensus 379 rvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 379 RVDNGIKIWHYTGS 392 (566)
T ss_pred EecCCeEEEEecCc
Confidence 789999998653
No 277
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.03 E-value=1.2e-07 Score=102.89 Aligned_cols=204 Identities=12% Similarity=0.124 Sum_probs=149.9
Q ss_pred EeeCCCCEEEEEEcCC------------CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccce
Q 005277 347 FINTHNGLNCASISQD------------GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSY 414 (704)
Q Consensus 347 ~~~~~~~V~~~~fs~d------------g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (704)
+..|...|+.+.|.|- .-+||++...|.|.+||+.. ....
T Consensus 51 ie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~----------------------------~s~~ 102 (1062)
T KOG1912|consen 51 IELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVL----------------------------ASVI 102 (1062)
T ss_pred cccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehh----------------------------hhhh
Confidence 3456678999999872 12678888899999999865 2234
Q ss_pred eeccCCccCeEEEEEcCC---C-CEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcC-CCCEEEEEeCCCeEEE
Q 005277 415 TLYQGHSGPVYSASFSPL---G-DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARI 489 (704)
Q Consensus 415 ~~~~~h~~~V~~l~~sp~---~-~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~l 489 (704)
..+..|..+|..++|-+. . ..|+.-....++.+|+..+|+....+........|+.+.| +.+.|..-+..|.+.+
T Consensus 103 ~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~ 182 (1062)
T KOG1912|consen 103 NWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLS 182 (1062)
T ss_pred hhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEE
Confidence 556778899999999763 3 3566666778999999999999998887777888899999 6777777777888887
Q ss_pred EECCC-------CceeEEeccCCC------------C-------------eeEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005277 490 WSMDR-------IQPLRIMAGHLS------------D-------------VDCVRWHINCNYIATGSSDKTVRLWDVSSG 537 (704)
Q Consensus 490 wd~~~-------~~~~~~~~~~~~------------~-------------V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~ 537 (704)
.+.-. ++..++-..|.+ . ...++|+|.-+-++.......+.++|+.-.
T Consensus 183 ~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~ 262 (1062)
T KOG1912|consen 183 CKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYE 262 (1062)
T ss_pred EeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhh
Confidence 76532 223333333322 0 112567776555555556788999999988
Q ss_pred cEEEEeecCCCCEEEEEEecCCC--EEEEEeCCCeEEEEeCCC
Q 005277 538 ECVRIFIGHRSMILSLAMSPDGR--YMASGDEDGTIMMWDLAS 578 (704)
Q Consensus 538 ~~~~~~~~h~~~i~~l~~spdg~--~l~sg~~dg~I~iwdl~~ 578 (704)
.++.+..-..+.+.-+.+-|+++ .|+++..||.+.+|-.+.
T Consensus 263 ~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 263 CCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred ceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 88888877777777788888764 799999999999997654
No 278
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.01 E-value=2.4e-07 Score=100.86 Aligned_cols=207 Identities=11% Similarity=-0.030 Sum_probs=128.1
Q ss_pred CEEEEEEcCCCCE-EEEEeCC---CcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEE
Q 005277 353 GLNCASISQDGSL-VAGGFSD---SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS 428 (704)
Q Consensus 353 ~V~~~~fs~dg~~-lasg~~d---g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 428 (704)
.+....|||||+. ++..+.+ ..|.++|+.+.. . ..+....+.+....
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~--------------------------~---~~lt~~~g~~~~~~ 239 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGK--------------------------K---EKIASSQGMLVVSD 239 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCc--------------------------E---EEEecCCCcEEeeE
Confidence 6778999999984 6654443 447777765421 1 11112345566778
Q ss_pred EcCCCCEEE-EEeCC--CeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeC-CC--eEEEEECCCCceeEEec
Q 005277 429 FSPLGDFIL-SSSAD--TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DR--TARIWSMDRIQPLRIMA 502 (704)
Q Consensus 429 ~sp~~~~l~-s~s~D--g~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~-dg--~i~lwd~~~~~~~~~~~ 502 (704)
|+|||+.|+ +.+.+ ..|.++++.++.. ..+..+........|+|||+.++..+. .+ .|.++|+++++..+...
T Consensus 240 ~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~ 318 (419)
T PRK04043 240 VSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF 318 (419)
T ss_pred ECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc
Confidence 999998766 44433 4677778876653 334434433445689999988776653 23 67778888776655443
Q ss_pred cCCCCeeEEEEcCCCCEEEEEECC---------CcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCC---Ce
Q 005277 503 GHLSDVDCVRWHINCNYIATGSSD---------KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED---GT 570 (704)
Q Consensus 503 ~~~~~V~~v~~~p~~~~l~tgs~d---------g~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~d---g~ 570 (704)
... ....|+|+|++|+..+.. ..|.+.|+.++.... +... .......|+|||+.|+....+ ..
T Consensus 319 ~g~---~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~ 393 (419)
T PRK04043 319 HGK---NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSDGGSIMFIKYLGNQSA 393 (419)
T ss_pred CCC---cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCCCCEEEEEEccCCcEE
Confidence 211 124899999999876643 368888988886543 3332 233468999999988765533 24
Q ss_pred EEEEeCCCCeeeeeecCCCceeeee
Q 005277 571 IMMWDLASGRCVTPLMGHTSCVWTL 595 (704)
Q Consensus 571 I~iwdl~~~~~~~~~~~h~~~V~sl 595 (704)
+.+.++... ....+....+.+...
T Consensus 394 L~~~~l~g~-~~~~l~~~~g~~~~p 417 (419)
T PRK04043 394 LGIIRLNYN-KSFLFPLKVGKIQSI 417 (419)
T ss_pred EEEEecCCC-eeEEeecCCCccCCC
Confidence 667777543 333343333444433
No 279
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.00 E-value=3.6e-07 Score=95.56 Aligned_cols=242 Identities=12% Similarity=0.039 Sum_probs=151.1
Q ss_pred EcCCCCEEEEEeC----------CCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEE
Q 005277 359 ISQDGSLVAGGFS----------DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS 428 (704)
Q Consensus 359 fs~dg~~lasg~~----------dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 428 (704)
+||||+.|.++.. +..|.+||..+............. ..+ ....-..++
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p-------------------~~~--~~~~~~~~~ 111 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGP-------------------RFL--VGTYPWMTS 111 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCc-------------------hhh--ccCccceEE
Confidence 9999998877765 788999999874432211110000 000 011234688
Q ss_pred EcCCCCEEEEEe-C-CCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeE-----Ee
Q 005277 429 FSPLGDFILSSS-A-DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR-----IM 501 (704)
Q Consensus 429 ~sp~~~~l~s~s-~-Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~-----~~ 501 (704)
++|||++|+... . +..|.+.|+.+++.+..+.-.. +..-...++...+ +-+.||......++...... .+
T Consensus 112 ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf 188 (352)
T TIGR02658 112 LTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVF 188 (352)
T ss_pred ECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCccE--EEeecCceEEEEecCCCceEEeeeeee
Confidence 999999998765 3 6899999999999888776422 2222333333322 22345555554443221111 11
Q ss_pred ccCCCCeeE-EEEcC-CCCEEEEEECCCcEEEEeCCC-----CcEEEEeec-------CCCCEEEEEEecCCCEEEEEe-
Q 005277 502 AGHLSDVDC-VRWHI-NCNYIATGSSDKTVRLWDVSS-----GECVRIFIG-------HRSMILSLAMSPDGRYMASGD- 566 (704)
Q Consensus 502 ~~~~~~V~~-v~~~p-~~~~l~tgs~dg~I~iwd~~~-----~~~~~~~~~-------h~~~i~~l~~spdg~~l~sg~- 566 (704)
.+...++.. =.|.+ ++.++++... |+|.+.|+.. ......+.. ..+.+.-++++|+|+.+++..
T Consensus 189 ~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~ 267 (352)
T TIGR02658 189 HPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLAD 267 (352)
T ss_pred cCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEec
Confidence 110011000 03345 8888888776 9999999643 333333221 223455599999999888743
Q ss_pred ---------CCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCC-
Q 005277 567 ---------EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGS- 636 (704)
Q Consensus 567 ---------~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~- 636 (704)
..+.|.++|..+++.+..+.. ...++.+.+ ++|++
T Consensus 268 ~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iav----------------------------------S~Dgkp 312 (352)
T TIGR02658 268 QRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINV----------------------------------SQDAKP 312 (352)
T ss_pred CCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEE----------------------------------CCCCCe
Confidence 225799999999999988863 346788888 99999
Q ss_pred EEEEEe-CCCcEEEEeCCCCccccc
Q 005277 637 LLASGS-ADCTVKLWDVTTSTKVLK 660 (704)
Q Consensus 637 ~lasgs-~Dg~V~iWd~~~~~~~~~ 660 (704)
+|++.. .++.|.+.|..+++.+..
T Consensus 313 ~lyvtn~~s~~VsViD~~t~k~i~~ 337 (352)
T TIGR02658 313 LLYALSTGDKTLYIFDAETGKELSS 337 (352)
T ss_pred EEEEeCCCCCcEEEEECcCCeEEee
Confidence 777665 678999999998876533
No 280
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.97 E-value=1.1e-07 Score=91.33 Aligned_cols=198 Identities=12% Similarity=-0.019 Sum_probs=134.8
Q ss_pred CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCC-CCEEEEEe
Q 005277 362 DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL-GDFILSSS 440 (704)
Q Consensus 362 dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-~~~l~s~s 440 (704)
...+||.|+..|...+|...+..... ..-..|...|+-+.=.-+ .--+..++
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~---------------------------~~cd~snn~v~~~~r~cd~~~~~~i~s 135 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHL---------------------------YQCDVSNNDVTLVKRYCDLKFPLNIAS 135 (344)
T ss_pred cccEEEeccccceeeeecccCcccce---------------------------eeecccccchhhhhhhcccccceeecc
Confidence 45689999999999999987522111 111122222221111111 12366778
Q ss_pred CCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCc--eeEE-eccCCCCeeEEEEcCCC
Q 005277 441 ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ--PLRI-MAGHLSDVDCVRWHINC 517 (704)
Q Consensus 441 ~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~--~~~~-~~~~~~~V~~v~~~p~~ 517 (704)
.|.++++.+++.+..........-.+.++.++++++++++.+....|.+|.++... .+++ .....+.-.+..|+.+.
T Consensus 136 ndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~ 215 (344)
T KOG4532|consen 136 NDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND 215 (344)
T ss_pred CCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc
Confidence 88899998887554433222222348899999999999999999999999997632 2332 23344456788999999
Q ss_pred CEEEEEECCCcEEEEeCCCCcEEE-----EeecCCCCEEEEEEecCCC--EEEEEeCCCeEEEEeCCCCeeeeeec
Q 005277 518 NYIATGSSDKTVRLWDVSSGECVR-----IFIGHRSMILSLAMSPDGR--YMASGDEDGTIMMWDLASGRCVTPLM 586 (704)
Q Consensus 518 ~~l~tgs~dg~I~iwd~~~~~~~~-----~~~~h~~~i~~l~~spdg~--~l~sg~~dg~I~iwdl~~~~~~~~~~ 586 (704)
..+|++..||++.|||++...... .-..|.+.+..+.|+|.|. +|...-.-+.+.+.|+++++....+.
T Consensus 216 ~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~ 291 (344)
T KOG4532|consen 216 LQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIV 291 (344)
T ss_pred ceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEe
Confidence 999999999999999998654322 2235889999999998664 45555556789999999987665543
No 281
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.94 E-value=3.6e-07 Score=95.24 Aligned_cols=239 Identities=14% Similarity=0.178 Sum_probs=154.2
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCc---------------EEEEEcccCCccccccccCCCCCCCCcccccCCCCCcccee
Q 005277 351 HNGLNCASISQDGSLVAGGFSDSS---------------LKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYT 415 (704)
Q Consensus 351 ~~~V~~~~fs~dg~~lasg~~dg~---------------I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (704)
+..|.-+.|||.+++|.+=+..+. +.|||..++ ..+.
T Consensus 71 ~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg----------------------------~iv~ 122 (561)
T COG5354 71 HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASG----------------------------MIVF 122 (561)
T ss_pred cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCc----------------------------eeEe
Confidence 346889999999999998765544 778877652 1222
Q ss_pred eccCCccC--eE-EEEEcCCCCEEEEEeCCCeEEEEeCCCCce-eEEeec-CCcCeeEEEEcCCC--CEEEE-----EeC
Q 005277 416 LYQGHSGP--VY-SASFSPLGDFILSSSADTTIRLWSTKLNAN-LVCYKG-HNYPVWDVQFNPQG--HYFAS-----SSH 483 (704)
Q Consensus 416 ~~~~h~~~--V~-~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~-~~~~~~-h~~~V~~v~~sp~~--~~l~s-----gs~ 483 (704)
.+.+-..+ .. -+.|+-+..+++--.. ..+.|+++ +... ...+.. ....|....|+|.+ ..|+. .+.
T Consensus 123 sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~-~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~k 200 (561)
T COG5354 123 SFNGISQPYLGWPVLKFSIDDKYVARVVG-SSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNK 200 (561)
T ss_pred eccccCCcccccceeeeeecchhhhhhcc-CeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCC
Confidence 22222222 23 5778888887764432 36999997 3322 111111 13568889999953 33443 357
Q ss_pred CCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEE-----------CCCcEEEEeCCCCcEEEEeecCCCCEEE
Q 005277 484 DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS-----------SDKTVRLWDVSSGECVRIFIGHRSMILS 552 (704)
Q Consensus 484 dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs-----------~dg~I~iwd~~~~~~~~~~~~h~~~i~~ 552 (704)
++++++|.+...+.+....-....-..+.|++.|+++++-. ....++|++++ ++.++......++|..
T Consensus 201 pa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~-e~~i~V~~~~~~pVhd 279 (561)
T COG5354 201 PAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT-ERSIPVEKDLKDPVHD 279 (561)
T ss_pred CcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeec-ccccceecccccccee
Confidence 88999999987777766544444456788999999887532 12458888886 4445544466899999
Q ss_pred EEEecCCCEEEE--EeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecc
Q 005277 553 LAMSPDGRYMAS--GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGC 630 (704)
Q Consensus 553 l~~spdg~~l~s--g~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (704)
.+|.|.++.+++ |-.+..+.++|++.. ....+. ...-..+.|
T Consensus 280 f~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P--e~~rNT~~f--------------------------------- 323 (561)
T COG5354 280 FTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP--EQKRNTIFF--------------------------------- 323 (561)
T ss_pred eeecccCCceeEEecccccceeecccccc-eEEecC--Ccccccccc---------------------------------
Confidence 999998887665 457889999999866 333222 222233445
Q ss_pred cCCCCCEEEEEeCC---CcEEEEeCCCCcc
Q 005277 631 ASCEGSLLASGSAD---CTVKLWDVTTSTK 657 (704)
Q Consensus 631 ~s~~g~~lasgs~D---g~V~iWd~~~~~~ 657 (704)
+|.+++++.++-| |.|-+||......
T Consensus 324 -sp~~r~il~agF~nl~gni~i~~~~~rf~ 352 (561)
T COG5354 324 -SPHERYILFAGFDNLQGNIEIFDPAGRFK 352 (561)
T ss_pred -cCcccEEEEecCCccccceEEeccCCceE
Confidence 7777777776543 6777777765443
No 282
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.93 E-value=5.5e-07 Score=97.51 Aligned_cols=186 Identities=14% Similarity=0.046 Sum_probs=121.0
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEE-EcC--CCCEEEEEeCCCeEEEEECCCCceeEEeccCCC---
Q 005277 433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQ-FNP--QGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS--- 506 (704)
Q Consensus 433 ~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~-~sp--~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~--- 506 (704)
+..++.++.+|.+..||..+++.+..+......+.... -+| .+..++.++.+|.+..+|.++++.+........
T Consensus 145 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~ 224 (377)
T TIGR03300 145 NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGR 224 (377)
T ss_pred CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCC
Confidence 45677788899999999999988877654332211000 011 234677888889999999998876654321100
Q ss_pred -C---eeEEEEcC--CCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCe
Q 005277 507 -D---VDCVRWHI--NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR 580 (704)
Q Consensus 507 -~---V~~v~~~p--~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~ 580 (704)
. +..+.-+| .+..+++++.+|.++.||..+|+.+..... . ...... .++..+++++.+|.+..+|..+|+
T Consensus 225 ~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~-~-~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~ 300 (377)
T TIGR03300 225 TELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA-S-SYQGPA--VDDNRLYVTDADGVVVALDRRSGS 300 (377)
T ss_pred CchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc-C-CccCce--EeCCEEEEECCCCeEEEEECCCCc
Confidence 0 00011111 356788888999999999999988776542 1 112222 256788888999999999999998
Q ss_pred eeeeecCCCce-eeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccc
Q 005277 581 CVTPLMGHTSC-VWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKV 658 (704)
Q Consensus 581 ~~~~~~~h~~~-V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~ 658 (704)
.+-........ ..+. ...+..|++++.+|.|++||..+++..
T Consensus 301 ~~W~~~~~~~~~~ssp------------------------------------~i~g~~l~~~~~~G~l~~~d~~tG~~~ 343 (377)
T TIGR03300 301 ELWKNDELKYRQLTAP------------------------------------AVVGGYLVVGDFEGYLHWLSREDGSFV 343 (377)
T ss_pred EEEccccccCCccccC------------------------------------EEECCEEEEEeCCCEEEEEECCCCCEE
Confidence 76544221111 1111 123568999999999999999888654
No 283
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.90 E-value=3.2e-06 Score=87.37 Aligned_cols=150 Identities=16% Similarity=0.207 Sum_probs=123.3
Q ss_pred eeccCCccCeEEEEEcCCCCEEEEEeCCC-eEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECC
Q 005277 415 TLYQGHSGPVYSASFSPLGDFILSSSADT-TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD 493 (704)
Q Consensus 415 ~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg-~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~ 493 (704)
..-.+|.+.|.-..+..+++-++.|..|| .+-|+|.+++.. ..+...-+.|.++..+|+|++++.+.....+-+.|++
T Consensus 353 ~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vidid 431 (668)
T COG4946 353 SIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDID 431 (668)
T ss_pred eEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEec
Confidence 33457888899889988888899999999 899999996654 4455567789999999999999999999999999999
Q ss_pred CCceeEEeccCCCCeeEEEEcCCCCEEEEEECCC----cEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEe
Q 005277 494 RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDK----TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD 566 (704)
Q Consensus 494 ~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg----~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~ 566 (704)
++.....-+...+-|+.+.|||++.++|.+--+| .|+++|+.+++....-+ ..+.=.+-+|.|||++|.--+
T Consensus 432 ngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 432 NGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred CCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcEEEEEe
Confidence 9988777677778899999999999999876554 69999999988776543 334445678999999887654
No 284
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.90 E-value=2.5e-08 Score=101.13 Aligned_cols=163 Identities=21% Similarity=0.251 Sum_probs=116.2
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCC
Q 005277 355 NCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGD 434 (704)
Q Consensus 355 ~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~ 434 (704)
..+..++.+++||++..+....++++...... .+....... ...-+++.|..+..
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~------------------------~kl~~~~~v-~~~~~ai~~~~~~~ 120 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKG------------------------AKLLDVSCV-PKRPTAISFIREDT 120 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCCc------------------------ceeeeEeec-ccCcceeeeeeccc
Confidence 44556788999999998888878887652210 011111111 11223444444444
Q ss_pred EEE---EEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec-cCCCCeeE
Q 005277 435 FIL---SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA-GHLSDVDC 510 (704)
Q Consensus 435 ~l~---s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~-~~~~~V~~ 510 (704)
... .++....+.+|+... .+...+-||-..+.+|+|+||+++++++..|..|++-.......+..+. ||..-|..
T Consensus 121 sv~v~dkagD~~~~di~s~~~-~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~ 199 (390)
T KOG3914|consen 121 SVLVADKAGDVYSFDILSADS-GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVST 199 (390)
T ss_pred eEEEEeecCCceeeeeecccc-cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheee
Confidence 333 445566677777766 4445566899999999999999999999999999998887665555554 79999999
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEee
Q 005277 511 VRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI 544 (704)
Q Consensus 511 v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~ 544 (704)
++.-++ ..|++|+.|++|++||+++|+++..+.
T Consensus 200 isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 200 ISLTDN-YLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred eeeccC-ceeeecCCCCcEEEEecccCCcccccc
Confidence 998765 458999999999999999999887653
No 285
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.89 E-value=1.4e-07 Score=102.34 Aligned_cols=239 Identities=17% Similarity=0.117 Sum_probs=177.3
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCC
Q 005277 354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG 433 (704)
Q Consensus 354 V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~ 433 (704)
-.++.|+|.| +||.|+ .+.|.+-|... .+.++.+.-|...|+.+.|.|..
T Consensus 18 ~~A~Dw~~~G-LiAygs-hslV~VVDs~s----------------------------~q~iqsie~h~s~V~~VrWap~~ 67 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGS-HSLVSVVDSRS----------------------------LQLIQSIELHQSAVTSVRWAPAP 67 (1062)
T ss_pred ccccccCccc-eEEEec-CceEEEEehhh----------------------------hhhhhccccCccceeEEEeccCC
Confidence 5778999876 677775 45677777554 23445566788999999998742
Q ss_pred ------------CEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcC---CC-CEEEEEeCCCeEEEEECCCCce
Q 005277 434 ------------DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP---QG-HYFASSSHDRTARIWSMDRIQP 497 (704)
Q Consensus 434 ------------~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp---~~-~~l~sgs~dg~i~lwd~~~~~~ 497 (704)
-.|+++...|.|.+||...+..+..+..|..++.+++|-+ +. ..++.-....++.+|+.++|+.
T Consensus 68 ~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k 147 (1062)
T KOG1912|consen 68 SPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK 147 (1062)
T ss_pred CchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce
Confidence 2467888889999999999999999999999999999987 33 4566666778999999999999
Q ss_pred eEEeccCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCC-------CCcEEEEeecCCC------------C--------
Q 005277 498 LRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVS-------SGECVRIFIGHRS------------M-------- 549 (704)
Q Consensus 498 ~~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~I~iwd~~-------~~~~~~~~~~h~~------------~-------- 549 (704)
...+........|+.+.| +...+..-+..|.+.+.+.- .|+.+..-..|.. .
T Consensus 148 ~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa 227 (1062)
T KOG1912|consen 148 FWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASA 227 (1062)
T ss_pred eeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcch
Confidence 988876667788899998 56677777778888777653 2334433333322 0
Q ss_pred -----EEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeee
Q 005277 550 -----ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLT 624 (704)
Q Consensus 550 -----i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (704)
.-.++|+|.-+.++.......+.++|+.-..++....-..+.+.-++|-+
T Consensus 228 ~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP------------------------- 282 (1062)
T KOG1912|consen 228 YFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLP------------------------- 282 (1062)
T ss_pred hHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEecc-------------------------
Confidence 12256788766666666677899999988878777766666666666621
Q ss_pred EEeecccCCCCCEEEEEeCCCcEEEEeCCC
Q 005277 625 IIYFGCASCEGSLLASGSADCTVKLWDVTT 654 (704)
Q Consensus 625 ~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~ 654 (704)
.+....|+++-.||.+.||-.+.
T Consensus 283 -------~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 283 -------DPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred -------CCCcceEEEEecCCeEEEEEeec
Confidence 55567899999999999998665
No 286
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.88 E-value=8.2e-07 Score=91.64 Aligned_cols=150 Identities=15% Similarity=0.197 Sum_probs=122.8
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCC-eEEEEECCCCceeEEeccCCCCeeE
Q 005277 432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR-TARIWSMDRIQPLRIMAGHLSDVDC 510 (704)
Q Consensus 432 ~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg-~i~lwd~~~~~~~~~~~~~~~~V~~ 510 (704)
+|.+++..|. |...|.+...+-.+. -+|.+.|.-..+..++.-++.|..|| .+-++|.++++..+ +....+.|.+
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~a 406 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEA 406 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCccceEE
Confidence 5788888876 567777665443333 35677798888888888999999999 99999999876544 4557789999
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCC----eEEEEeCCCCeeeeee
Q 005277 511 VRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG----TIMMWDLASGRCVTPL 585 (704)
Q Consensus 511 v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg----~I~iwdl~~~~~~~~~ 585 (704)
+..+|+|++++++.....+.+.|+.+|+....-+...+-|+.+.|+|+++++|-+--+| .|+++|+.+++.....
T Consensus 407 v~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT 485 (668)
T COG4946 407 VKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT 485 (668)
T ss_pred EEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEec
Confidence 99999999999999999999999999987766666778899999999999999887766 6899999988765543
No 287
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.88 E-value=2.4e-08 Score=95.45 Aligned_cols=175 Identities=21% Similarity=0.232 Sum_probs=111.1
Q ss_pred cCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccce
Q 005277 335 SSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSY 414 (704)
Q Consensus 335 ~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (704)
|......-.+.++..|.+.-.|-+.+--++-+++|..||.+.+++.+... ....
T Consensus 73 ~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~-~~~~------------------------- 126 (319)
T KOG4714|consen 73 WERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDL-ALMS------------------------- 126 (319)
T ss_pred hhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHH-hhhh-------------------------
Confidence 33333334444555555555555556667889999999999999976511 0000
Q ss_pred eeccCCccCeEEEEEcCCCCEEEEEe-----CCCeEEEEeCCCCceeEEeecCCcCeeEEEEcC-CCCEEEEEeCCCeEE
Q 005277 415 TLYQGHSGPVYSASFSPLGDFILSSS-----ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTAR 488 (704)
Q Consensus 415 ~~~~~h~~~V~~l~~sp~~~~l~s~s-----~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~ 488 (704)
+.-.-|.+. .+.+....++++.++. .-+..++|+++..+....-+.-...|.+++-+| +.+.+++|+.||.+.
T Consensus 127 ~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~ 205 (319)
T KOG4714|consen 127 RIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVG 205 (319)
T ss_pred hcccccccc-cccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEE
Confidence 000011111 1222223344444332 123456777765443332222233499999999 566788889999999
Q ss_pred EEECCCCc-eeEEeccCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCC
Q 005277 489 IWSMDRIQ-PLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSS 536 (704)
Q Consensus 489 lwd~~~~~-~~~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~I~iwd~~~ 536 (704)
+||.++.. +...+..|..++..+-||| ++..|++++.||.+..||..+
T Consensus 206 l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 206 LWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred EEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 99998864 4455678999999999998 578999999999999999764
No 288
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.88 E-value=1.4e-06 Score=94.96 Aligned_cols=202 Identities=11% Similarity=0.017 Sum_probs=128.1
Q ss_pred CeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCE-EEEEeC---CCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCC
Q 005277 443 TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY-FASSSH---DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCN 518 (704)
Q Consensus 443 g~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~-l~sgs~---dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~ 518 (704)
..|.+-|.+... ...+.... .+..-.|+|+|+. ++..+. +..|.++|+.+++...... ..+......|+|||+
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGS 245 (419)
T ss_pred ceEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCC
Confidence 355555555333 33333333 7788999999984 554433 3568889998887665544 445566788999998
Q ss_pred EEEEEE-C--CCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCC-C--eEEEEeCCCCeeeeeecCCCcee
Q 005277 519 YIATGS-S--DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED-G--TIMMWDLASGRCVTPLMGHTSCV 592 (704)
Q Consensus 519 ~l~tgs-~--dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~d-g--~I~iwdl~~~~~~~~~~~h~~~V 592 (704)
.++... . +..|.++|+.++...+ +..+........|+|||+.|+..+.. | .|.++|+.+++....... ..
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~-- 321 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLTQ-ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK-- 321 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEEE-cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC--
Confidence 776543 2 3568888988887544 44444434566899999988766532 2 688888887765333221 11
Q ss_pred eeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCC---------CcEEEEeCCCCcccccccc
Q 005277 593 WTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSAD---------CTVKLWDVTTSTKVLKTEE 663 (704)
Q Consensus 593 ~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~D---------g~V~iWd~~~~~~~~~~~~ 663 (704)
....| +|+|+.|+..+.. ..|.+.|+.++..
T Consensus 322 ~~~~~----------------------------------SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~------ 361 (419)
T PRK04043 322 NNSSV----------------------------------STYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI------ 361 (419)
T ss_pred cCceE----------------------------------CCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe------
Confidence 12356 9999988766543 2577777766542
Q ss_pred ccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277 664 KSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 702 (704)
Q Consensus 664 ~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg 702 (704)
+.+..- .......|+|||..++..+..+
T Consensus 362 -------~~LT~~----~~~~~p~~SPDG~~I~f~~~~~ 389 (419)
T PRK04043 362 -------RRLTAN----GVNQFPRFSSDGGSIMFIKYLG 389 (419)
T ss_pred -------EECCCC----CCcCCeEECCCCCEEEEEEccC
Confidence 112221 1223578999999888876554
No 289
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.88 E-value=4.6e-09 Score=104.04 Aligned_cols=156 Identities=18% Similarity=0.277 Sum_probs=120.8
Q ss_pred EEEcC--CCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC-----cEEE
Q 005277 469 VQFNP--QGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG-----ECVR 541 (704)
Q Consensus 469 v~~sp--~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~-----~~~~ 541 (704)
++|+- .|.. ++.+.+..|-+-|++++-. +.|. ..++|.++.|+..+++++.|+.+|.|..+|++.+ .+..
T Consensus 217 CawSlni~gyh-fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~ 293 (425)
T KOG2695|consen 217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ 293 (425)
T ss_pred hhhhhccceee-ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceE
Confidence 35543 3444 4455667888999988643 3333 6788999999999999999999999999999865 3444
Q ss_pred EeecCCCCEEEEEEec-CCCEEEEEeCCCeEEEEeCCCCee---eeeecCCCceeeeeeeeeeehccccccccccccccc
Q 005277 542 IFIGHRSMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRC---VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTG 617 (704)
Q Consensus 542 ~~~~h~~~i~~l~~sp-dg~~l~sg~~dg~I~iwdl~~~~~---~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~ 617 (704)
.+ -|...|+++..-. ++++|++.+.+|+|++||++.-++ +.++.||...-.-+.+..
T Consensus 294 rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v------------------ 354 (425)
T KOG2695|consen 294 RL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHV------------------ 354 (425)
T ss_pred EE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccc------------------
Confidence 34 4888999998777 789999999999999999998777 888888875444443311
Q ss_pred eeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccc
Q 005277 618 FLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLK 660 (704)
Q Consensus 618 ~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~ 660 (704)
.+....++++|.|...|||.+..+..+.+
T Consensus 355 --------------~~eeg~I~s~GdDcytRiWsl~~ghLl~t 383 (425)
T KOG2695|consen 355 --------------KEEEGSIFSVGDDCYTRIWSLDSGHLLCT 383 (425)
T ss_pred --------------ccccceEEEccCeeEEEEEecccCceeec
Confidence 66777899999999999999998876543
No 290
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.87 E-value=2.1e-08 Score=101.75 Aligned_cols=161 Identities=17% Similarity=0.233 Sum_probs=116.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce----eEEeecCCcCeeEEEEcCCCCEEEEE---eCCCeEEEEECCCC
Q 005277 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNAN----LVCYKGHNYPVWDVQFNPQGHYFASS---SHDRTARIWSMDRI 495 (704)
Q Consensus 423 ~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~----~~~~~~h~~~V~~v~~sp~~~~l~sg---s~dg~i~lwd~~~~ 495 (704)
.+..+..++.+++|+++..+....++++..... +..+. -...-+.+.|..+......+ +....+.+|....
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~- 141 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS- 141 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccc-
Confidence 345566778888888888888877777664432 22221 22233455555555554444 4445566666555
Q ss_pred ceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEe-ecCCCCEEEEEEecCCCEEEEEeCCCeEEEE
Q 005277 496 QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF-IGHRSMILSLAMSPDGRYMASGDEDGTIMMW 574 (704)
Q Consensus 496 ~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~-~~h~~~i~~l~~spdg~~l~sg~~dg~I~iw 574 (704)
.+...+-||.+.+..|+|+||+++|+++..|..||+-....-..+..| -||+.-|..++.-++ +.|++||.|++|++|
T Consensus 142 ~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~W 220 (390)
T KOG3914|consen 142 GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLW 220 (390)
T ss_pred cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEE
Confidence 344555689999999999999999999999999999887665555554 479999999999854 568999999999999
Q ss_pred eCCCCeeeeeec
Q 005277 575 DLASGRCVTPLM 586 (704)
Q Consensus 575 dl~~~~~~~~~~ 586 (704)
|+.+|+.+.++.
T Consensus 221 d~~sgk~L~t~d 232 (390)
T KOG3914|consen 221 DITSGKLLDTCD 232 (390)
T ss_pred ecccCCcccccc
Confidence 999999886553
No 291
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.87 E-value=2e-06 Score=84.38 Aligned_cols=231 Identities=13% Similarity=0.149 Sum_probs=134.1
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEE
Q 005277 357 ASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFI 436 (704)
Q Consensus 357 ~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l 436 (704)
++.+.||++||+- .|..|.|=..+..-.... ..........-.=.-++||||+.+|
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~-----------------------~kcqVpkD~~PQWRkl~WSpD~tlL 58 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSII-----------------------GKCQVPKDPNPQWRKLAWSPDCTLL 58 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchhee-----------------------EEEecCCCCCchheEEEECCCCcEE
Confidence 5678899988876 688887776543211100 0111111122234578999999999
Q ss_pred EEEeCCCeEEEEeCCCCceeEEeec-------CCcCeeEEEEcCC------CCEEEEEeCCCeEEEEECCC-----Ccee
Q 005277 437 LSSSADTTIRLWSTKLNANLVCYKG-------HNYPVWDVQFNPQ------GHYFASSSHDRTARIWSMDR-----IQPL 498 (704)
Q Consensus 437 ~s~s~Dg~I~lwd~~~~~~~~~~~~-------h~~~V~~v~~sp~------~~~l~sgs~dg~i~lwd~~~-----~~~~ 498 (704)
+.+...|+|+++|+.. ..+..+.. -...|.++.|.+. ...|++-..+|.++-|-+.. .+..
T Consensus 59 a~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~ 137 (282)
T PF15492_consen 59 AYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQEN 137 (282)
T ss_pred EEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceee
Confidence 9999999999999984 44433332 1356777777652 22466666778777776532 2222
Q ss_pred EEec---cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEE---ecCCCEEEEEeCCC---
Q 005277 499 RIMA---GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAM---SPDGRYMASGDEDG--- 569 (704)
Q Consensus 499 ~~~~---~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~---spdg~~l~sg~~dg--- 569 (704)
..+. .+...|.++.|+|..++|++|+.... ..+. -+.....+++-.. +|..+. ++...|+
T Consensus 138 hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~-v~~~~~~~~~ 206 (282)
T PF15492_consen 138 HSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQ-VTSSEDDITA 206 (282)
T ss_pred EEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEE-ccccCccccc
Confidence 3332 24668999999999999988774332 0000 0011112222111 111111 1122221
Q ss_pred ---eEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCc
Q 005277 570 ---TIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCT 646 (704)
Q Consensus 570 ---~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~ 646 (704)
+-.+|.+-+.+...........|..|.. ||||+.||+...+|.
T Consensus 207 ~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSl----------------------------------SPdg~~La~ih~sG~ 252 (282)
T PF15492_consen 207 SSKRRGLLRIPSFKFFSRQGQEQDGIFKMSL----------------------------------SPDGSLLACIHFSGS 252 (282)
T ss_pred cccccceeeccceeeeeccccCCCceEEEEE----------------------------------CCCCCEEEEEEcCCe
Confidence 1234444333222222234567777777 999999999999999
Q ss_pred EEEEeCCCCcc
Q 005277 647 VKLWDVTTSTK 657 (704)
Q Consensus 647 V~iWd~~~~~~ 657 (704)
|.+|++.+-..
T Consensus 253 lsLW~iPsL~~ 263 (282)
T PF15492_consen 253 LSLWEIPSLRL 263 (282)
T ss_pred EEEEecCcchh
Confidence 99999987543
No 292
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.85 E-value=7.4e-07 Score=107.41 Aligned_cols=215 Identities=13% Similarity=0.182 Sum_probs=135.9
Q ss_pred EEEEEEcCCCCEEEEE-eCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcC-
Q 005277 354 LNCASISQDGSLVAGG-FSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP- 431 (704)
Q Consensus 354 V~~~~fs~dg~~lasg-~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp- 431 (704)
...++++++++.|.++ ..++.|+++|+.+......... +..... . ..+....... . ..-.+++|+|
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~--G~~g~~-----~-~gg~~~~~~~---l-n~P~gVa~dp~ 693 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGN--GTKGSD-----Y-QGGKKGTSQV---L-NSPWDVCFEPV 693 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEecc--CcccCC-----C-CCChhhhHhh---c-CCCeEEEEecC
Confidence 4778898887765554 4467799998765221111000 000000 0 0000000000 1 1235789999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEeecC---------------CcCeeEEEEcCCCCEE-EEEeCCCeEEEEECCCC
Q 005277 432 LGDFILSSSADTTIRLWSTKLNANLVCYKGH---------------NYPVWDVQFNPQGHYF-ASSSHDRTARIWSMDRI 495 (704)
Q Consensus 432 ~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h---------------~~~V~~v~~sp~~~~l-~sgs~dg~i~lwd~~~~ 495 (704)
++..+++.+.++.|++||..++... .+.+. -...+.|+++|++.++ ++-+.++.|++||++++
T Consensus 694 ~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg 772 (1057)
T PLN02919 694 NEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTG 772 (1057)
T ss_pred CCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCC
Confidence 4556667778899999998866432 22111 1235679999998854 55567799999999875
Q ss_pred ceeEEecc---------------------CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEee-c--------
Q 005277 496 QPLRIMAG---------------------HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-G-------- 545 (704)
Q Consensus 496 ~~~~~~~~---------------------~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~-------- 545 (704)
.......+ ......+++++++|+++++-+.++.|++||..++....... +
T Consensus 773 ~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~ 852 (1057)
T PLN02919 773 GSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGK 852 (1057)
T ss_pred cEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCc
Confidence 43211100 01123588999999988888899999999998876554321 1
Q ss_pred ----CCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCee
Q 005277 546 ----HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC 581 (704)
Q Consensus 546 ----h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~ 581 (704)
.-.....++++++|+.+++-+.++.|++||+.+++.
T Consensus 853 ~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 853 ALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 112577899999999999889999999999988764
No 293
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.85 E-value=5.7e-06 Score=86.61 Aligned_cols=217 Identities=13% Similarity=0.146 Sum_probs=130.8
Q ss_pred EcCCCCEEEEEeC----------CCeEEEEeCCCCceeEEeecC-------CcCeeEEEEcCCCCEEEEEe-C-CCeEEE
Q 005277 429 FSPLGDFILSSSA----------DTTIRLWSTKLNANLVCYKGH-------NYPVWDVQFNPQGHYFASSS-H-DRTARI 489 (704)
Q Consensus 429 ~sp~~~~l~s~s~----------Dg~I~lwd~~~~~~~~~~~~h-------~~~V~~v~~sp~~~~l~sgs-~-dg~i~l 489 (704)
++||++.|+.+.. +..|.+||..+.+.+..+... ......++++|+|+++++.. . +..|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 8999998886654 789999999999998877632 12234789999999988776 3 799999
Q ss_pred EECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC-CCcEE----EEeecCCCCEEE-EEEec-CCCEE
Q 005277 490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS-SGECV----RIFIGHRSMILS-LAMSP-DGRYM 562 (704)
Q Consensus 490 wd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~-~~~~~----~~~~~h~~~i~~-l~~sp-dg~~l 562 (704)
.|+.+++.+..+.-. +...-+..+.+..+ +-+.||......+. +|+.. ..|.+...++.. -.|++ +|+++
T Consensus 133 vD~~~~kvv~ei~vp-~~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~ 209 (352)
T TIGR02658 133 VDLEGKAFVRMMDVP-DCYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLV 209 (352)
T ss_pred EECCCCcEEEEEeCC-CCcEEEEecCCccE--EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEE
Confidence 999999888877632 11222222222222 12234444443332 12211 111110111000 04466 88888
Q ss_pred EEEeCCCeEEEEeCCCCee-----eeeecC-------CCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecc
Q 005277 563 ASGDEDGTIMMWDLASGRC-----VTPLMG-------HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGC 630 (704)
Q Consensus 563 ~sg~~dg~I~iwdl~~~~~-----~~~~~~-------h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (704)
.+... |.|.+.|+..... ...+.. ..+...-+++
T Consensus 210 ~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~--------------------------------- 255 (352)
T TIGR02658 210 WPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAY--------------------------------- 255 (352)
T ss_pred EEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEE---------------------------------
Confidence 77776 9999999754322 221110 0111111333
Q ss_pred cCCCCCEEEEEe----------CCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCc-EEEEee
Q 005277 631 ASCEGSLLASGS----------ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL-LFAAGA 699 (704)
Q Consensus 631 ~s~~g~~lasgs----------~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~-~La~gs 699 (704)
+++++.+++.. ..+.|.++|..+.+.+ ..++. ...+..++|+||++ +|.+..
T Consensus 256 -~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi---------------~~i~v-G~~~~~iavS~Dgkp~lyvtn 318 (352)
T TIGR02658 256 -HRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRL---------------RKIEL-GHEIDSINVSQDAKPLLYALS 318 (352)
T ss_pred -cCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEE---------------EEEeC-CCceeeEEECCCCCeEEEEeC
Confidence 88888887743 2257999999887653 33333 35789999999999 666554
No 294
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.85 E-value=4.6e-08 Score=95.64 Aligned_cols=244 Identities=16% Similarity=0.326 Sum_probs=157.1
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-----eeEEeecCC------------cCeeEEEEcCCC--CEEEEE
Q 005277 421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA-----NLVCYKGHN------------YPVWDVQFNPQG--HYFASS 481 (704)
Q Consensus 421 ~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~-----~~~~~~~h~------------~~V~~v~~sp~~--~~l~sg 481 (704)
...|+++.|...|.||++|...|.|.++.-.... ....+++|. ..|..|.|..++ ..|+..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4678999999999999999999999999765432 122355554 347788887643 457778
Q ss_pred eCCCeEEEEECCCC------------------------------------------ceeEEe-ccCCCCeeEEEEcCCCC
Q 005277 482 SHDRTARIWSMDRI------------------------------------------QPLRIM-AGHLSDVDCVRWHINCN 518 (704)
Q Consensus 482 s~dg~i~lwd~~~~------------------------------------------~~~~~~-~~~~~~V~~v~~~p~~~ 518 (704)
+.|++|++|.+... .+.+.+ ..|.-.+.+++|+.+..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 89999999987421 011222 35666788899988877
Q ss_pred EEEEEECCCcEEEEeCCCCc-E--EEEeecCC-----CCEEEEEEecC-CCEEEEEeCCCeEEEEeCCCCeee------e
Q 005277 519 YIATGSSDKTVRLWDVSSGE-C--VRIFIGHR-----SMILSLAMSPD-GRYMASGDEDGTIMMWDLASGRCV------T 583 (704)
Q Consensus 519 ~l~tgs~dg~I~iwd~~~~~-~--~~~~~~h~-----~~i~~l~~spd-g~~l~sg~~dg~I~iwdl~~~~~~------~ 583 (704)
.++++ .|-.|.+|.+.--. + +-.++.|. .-|++..|+|. ...+.-.+..|.|++-|++....- .
T Consensus 186 t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf 264 (460)
T COG5170 186 TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF 264 (460)
T ss_pred eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence 77776 57789999886322 1 22233443 35888999995 456666778899999999853211 1
Q ss_pred e--e--------cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCC
Q 005277 584 P--L--------MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVT 653 (704)
Q Consensus 584 ~--~--------~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~ 653 (704)
. + .+-...|..+.| +++|+++++-+. .+|+|||+.
T Consensus 265 e~~~D~v~~~ff~eivsSISD~kF----------------------------------s~ngryIlsRdy-ltvkiwDvn 309 (460)
T COG5170 265 ELTIDGVDVDFFEEIVSSISDFKF----------------------------------SDNGRYILSRDY-LTVKIWDVN 309 (460)
T ss_pred hhccCcccchhHHHHhhhhcceEE----------------------------------cCCCcEEEEecc-ceEEEEecc
Confidence 0 1 111234455555 999999988776 599999999
Q ss_pred CCccccccccccCccccccccccCCCCcCe---EEEEEccCCcEEEEeecCC
Q 005277 654 TSTKVLKTEEKSGTNRLRSLKTLPTKSTPV---YSLQFSRRNLLFAAGALSK 702 (704)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V---~~l~fs~~g~~La~gs~dg 702 (704)
..........-... -...+.... ....| ..+.||.|...+.+|++.+
T Consensus 310 m~k~pikTi~~h~~-l~~~l~d~Y-EnDaifdkFeisfSgd~~~v~sgsy~N 359 (460)
T COG5170 310 MAKNPIKTIPMHCD-LMDELNDVY-ENDAIFDKFEISFSGDDKHVLSGSYSN 359 (460)
T ss_pred cccCCceeechHHH-HHHHHHhhh-hccceeeeEEEEecCCccccccccccc
Confidence 87654433210000 000011110 11222 4577888888888888765
No 295
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.82 E-value=9.5e-06 Score=82.19 Aligned_cols=206 Identities=16% Similarity=0.150 Sum_probs=138.1
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEc-CCC
Q 005277 356 CASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS-PLG 433 (704)
Q Consensus 356 ~~~fs~-dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s-p~~ 433 (704)
+..|.+ ++.++++-...+.|..|+..+.. ..... ..+ ..++.+. +++
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~-----------------------------~~~~~-~~~-~~G~~~~~~~g 52 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGE-----------------------------VEVID-LPG-PNGMAFDRPDG 52 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTE-----------------------------EEEEE-SSS-EEEEEEECTTS
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCe-----------------------------EEEEe-cCC-CceEEEEccCC
Confidence 567887 78888888889999999976521 11111 111 6677777 565
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeEEeec-----CCcCeeEEEEcCCCCEEEEEeCC--------CeEEEEECCCCceeEE
Q 005277 434 DFILSSSADTTIRLWSTKLNANLVCYKG-----HNYPVWDVQFNPQGHYFASSSHD--------RTARIWSMDRIQPLRI 500 (704)
Q Consensus 434 ~~l~s~s~Dg~I~lwd~~~~~~~~~~~~-----h~~~V~~v~~sp~~~~l~sgs~d--------g~i~lwd~~~~~~~~~ 500 (704)
.|+.+...+ +.++|..+++....... ......++++.|+|++.++.... |.+..++.+ ++. ..
T Consensus 53 -~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~-~~ 128 (246)
T PF08450_consen 53 -RLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV-TV 128 (246)
T ss_dssp -EEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE-EE
T ss_pred -EEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeE-EE
Confidence 455555544 56669888755443332 34568899999999977776543 557777776 443 33
Q ss_pred eccCCCCeeEEEEcCCCCEEE-EEECCCcEEEEeCCCCcE----EEEe---ecCCCCEEEEEEecCCCEEEEEeCCCeEE
Q 005277 501 MAGHLSDVDCVRWHINCNYIA-TGSSDKTVRLWDVSSGEC----VRIF---IGHRSMILSLAMSPDGRYMASGDEDGTIM 572 (704)
Q Consensus 501 ~~~~~~~V~~v~~~p~~~~l~-tgs~dg~I~iwd~~~~~~----~~~~---~~h~~~i~~l~~spdg~~l~sg~~dg~I~ 572 (704)
........+.++|+|+++.|+ +-+..+.|..+++..... .+.+ ....+..-.+++..+|++.++....+.|.
T Consensus 129 ~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~ 208 (246)
T PF08450_consen 129 VADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIV 208 (246)
T ss_dssp EEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEE
T ss_pred EecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEE
Confidence 333456678999999998776 456678899999863221 1222 22223488899999999888888899999
Q ss_pred EEeCCCCeeeeeecCCCceeeeeee
Q 005277 573 MWDLASGRCVTPLMGHTSCVWTLAY 597 (704)
Q Consensus 573 iwdl~~~~~~~~~~~h~~~V~sl~~ 597 (704)
++|.. |+.+..+......+++++|
T Consensus 209 ~~~p~-G~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 209 VFDPD-GKLLREIELPVPRPTNCAF 232 (246)
T ss_dssp EEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred EECCC-ccEEEEEcCCCCCEEEEEE
Confidence 99977 8888877655557788877
No 296
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.82 E-value=1.9e-06 Score=86.58 Aligned_cols=187 Identities=17% Similarity=0.142 Sum_probs=126.0
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe-ccCCC---C
Q 005277 432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM-AGHLS---D 507 (704)
Q Consensus 432 ~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~-~~~~~---~ 507 (704)
++..+++++.++.+..||..+++.+..+.. ..++.... ...+..+++++.++.++.+|..+++.+... ..... .
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~ 112 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV 112 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccccccccceeeeEecccCCcceeeeecccccccccc
Confidence 467788888999999999999999888775 22322221 224556777778889999999999998874 32211 1
Q ss_pred eeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCC----------EEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 005277 508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM----------ILSLAMSPDGRYMASGDEDGTIMMWDLA 577 (704)
Q Consensus 508 V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~----------i~~l~~spdg~~l~sg~~dg~I~iwdl~ 577 (704)
.........++.++++..++.|..+|.++|+.+......... +.+-....++ .++.++.+|.+..+|+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~ 191 (238)
T PF13360_consen 113 RSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLA 191 (238)
T ss_dssp B--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETT
T ss_pred ccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECC
Confidence 122223334788999999999999999999998888664422 1122222245 77777777754444999
Q ss_pred CCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcc
Q 005277 578 SGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTK 657 (704)
Q Consensus 578 ~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~ 657 (704)
+++.+-... ...+..+ . ...+..|+.++.++.|..||+.+++.
T Consensus 192 tg~~~w~~~--~~~~~~~-~----------------------------------~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 192 TGEKLWSKP--ISGIYSL-P----------------------------------SVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp TTEEEEEEC--SS-ECEC-E----------------------------------ECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred CCCEEEEec--CCCccCC-c----------------------------------eeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 998654322 1112211 1 45677888888999999999999875
Q ss_pred c
Q 005277 658 V 658 (704)
Q Consensus 658 ~ 658 (704)
.
T Consensus 235 ~ 235 (238)
T PF13360_consen 235 V 235 (238)
T ss_dssp E
T ss_pred E
Confidence 4
No 297
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.82 E-value=3.3e-08 Score=106.54 Aligned_cols=203 Identities=25% Similarity=0.360 Sum_probs=147.9
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCC--cCeeEEEEcCCC--CEEEEEeCCCeEEEEECCCC-
Q 005277 421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN--YPVWDVQFNPQG--HYFASSSHDRTARIWSMDRI- 495 (704)
Q Consensus 421 ~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~--~~V~~v~~sp~~--~~l~sgs~dg~i~lwd~~~~- 495 (704)
.+++.++..+|.|+-++.++.-| +.+.|++..-..-.+-.|. -.|-++.|+|+. .+-++........+|++...
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 46788899999999999998877 5566766543322222242 346778888853 34444555567788988543
Q ss_pred --ceeEEeccCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCc-EEEEeecCCCCEEEEEEecCCCEEEEEeCCCeE
Q 005277 496 --QPLRIMAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGE-CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTI 571 (704)
Q Consensus 496 --~~~~~~~~~~~~V~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~-~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I 571 (704)
.....+.+|...|+.+.|+|. ...+++++.|-.+..||+++-. ++..+..-....+.++|+-....+.+.+....|
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i 182 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI 182 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCce
Confidence 233455689999999999985 5688999999999999998753 455444444566789998754445555666789
Q ss_pred EEEeCCCC-eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEE
Q 005277 572 MMWDLASG-RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLW 650 (704)
Q Consensus 572 ~iwdl~~~-~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iW 650 (704)
.+||++.| .++..+++|...|.+++|. ...-..+.+.+.||+|++|
T Consensus 183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fn---------------------------------r~~~s~~~s~~~d~tvkfw 229 (1081)
T KOG0309|consen 183 FVWDLRKGSTPLCSLKGHVSSVNSIDFN---------------------------------RFKYSEIMSSSNDGTVKFW 229 (1081)
T ss_pred EEEeccCCCcceEEecccceeeehHHHh---------------------------------hhhhhhhcccCCCCceeee
Confidence 99999876 5778889999999999883 3334578899999999999
Q ss_pred eCCCCcc
Q 005277 651 DVTTSTK 657 (704)
Q Consensus 651 d~~~~~~ 657 (704)
|......
T Consensus 230 ~y~kSt~ 236 (1081)
T KOG0309|consen 230 DYSKSTT 236 (1081)
T ss_pred ccccccc
Confidence 9987654
No 298
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.80 E-value=3.6e-09 Score=115.62 Aligned_cols=199 Identities=17% Similarity=0.239 Sum_probs=149.3
Q ss_pred EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (704)
Q Consensus 346 ~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (704)
+|..|....+|++||-+.+.|++|+..|.|+++++.++ .......+|..+|+
T Consensus 1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG----------------------------~~e~s~ncH~SavT 1147 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG----------------------------SMEESVNCHQSAVT 1147 (1516)
T ss_pred hhhccccceeeEEeecCCceEEeeeccceEEEEEccCc----------------------------cccccccccccccc
Confidence 57788899999999999999999999999999998862 22334567999999
Q ss_pred EEEEcCCCCEEEEEeCCC--eEEEEeCCC-CceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec
Q 005277 426 SASFSPLGDFILSSSADT--TIRLWSTKL-NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA 502 (704)
Q Consensus 426 ~l~~sp~~~~l~s~s~Dg--~I~lwd~~~-~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~ 502 (704)
-+.-+.+|..+++.+.-. -..+|++.+ +...++|.+ -.++.|+.....-+.|+....+.+||+.+..++..+-
T Consensus 1148 ~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tyl 1223 (1516)
T KOG1832|consen 1148 LVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYL 1223 (1516)
T ss_pred cccccCCcceeeeeccccCchHHHhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhc
Confidence 999999999877554433 478999864 444555543 3478898765555666666789999999988876632
Q ss_pred -c---CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 005277 503 -G---HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578 (704)
Q Consensus 503 -~---~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~ 578 (704)
+ ....-++..|+|...+++- || .+||++..+.++.|...+..+ .-.|+|.|.-++..+. |||+++
T Consensus 1224 t~~~~~~y~~n~a~FsP~D~LIln---dG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINSE-----IwD~RT 1292 (1516)
T KOG1832|consen 1224 TDTVTSSYSNNLAHFSPCDTLILN---DG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINSE-----IWDMRT 1292 (1516)
T ss_pred CcchhhhhhccccccCCCcceEee---Cc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeech-----hhhhHH
Confidence 1 2223478899998887763 44 489999888888776544322 3469999999888764 899999
Q ss_pred CeeeeeecC
Q 005277 579 GRCVTPLMG 587 (704)
Q Consensus 579 ~~~~~~~~~ 587 (704)
.+.+.....
T Consensus 1293 F~lLh~VP~ 1301 (1516)
T KOG1832|consen 1293 FKLLHSVPS 1301 (1516)
T ss_pred HHHHhcCcc
Confidence 887766543
No 299
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.75 E-value=1.8e-05 Score=80.17 Aligned_cols=215 Identities=15% Similarity=0.156 Sum_probs=136.7
Q ss_pred EEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEc-CCCCEEEEEeCCCeEEEEECCCCceeEEecc
Q 005277 426 SASFSP-LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN-PQGHYFASSSHDRTARIWSMDRIQPLRIMAG 503 (704)
Q Consensus 426 ~l~~sp-~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~s-p~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~ 503 (704)
++.|.+ ++.++++-...+.|..|+..++.... +.... ...+.+. +++. ++.+...+ +.++|..+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~-l~v~~~~~-~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGR-LYVADSGG-IAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSE-EEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCE-EEEEEcCc-eEEEecCCCcEEEEeec
Confidence 578888 66666677788999999998765543 33222 6677777 5654 55555544 55569888755444332
Q ss_pred -----CCCCeeEEEEcCCCCEEEEEECC--------CcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEE-EEeCCC
Q 005277 504 -----HLSDVDCVRWHINCNYIATGSSD--------KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMA-SGDEDG 569 (704)
Q Consensus 504 -----~~~~V~~v~~~p~~~~l~tgs~d--------g~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~-sg~~dg 569 (704)
.....+.+++.|+|++.++.... |.|..++.. ++..... ..-...+.|+|+|+++.|+ +-+..+
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEEEEETTSSEEEEEETTTT
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccceEECCcchheeecccccc
Confidence 33457889999999977776543 557888876 5544443 3345678999999999776 556778
Q ss_pred eEEEEeCCCCee-------eeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEe
Q 005277 570 TIMMWDLASGRC-------VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGS 642 (704)
Q Consensus 570 ~I~iwdl~~~~~-------~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs 642 (704)
.|..+++..... +..+....+..-.+++ ..+|++.++..
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~v----------------------------------D~~G~l~va~~ 202 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAV----------------------------------DSDGNLWVADW 202 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEE----------------------------------BTTS-EEEEEE
T ss_pred eeEEEeccccccceeeeeeEEEcCCCCcCCCcceE----------------------------------cCCCCEEEEEc
Confidence 899999853221 1112222223444555 88999888888
Q ss_pred CCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEc-cCCc-EEEE
Q 005277 643 ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFS-RRNL-LFAA 697 (704)
Q Consensus 643 ~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs-~~g~-~La~ 697 (704)
..+.|.+++-. ++.. ..+......+++++|. ++.. ++++
T Consensus 203 ~~~~I~~~~p~-G~~~---------------~~i~~p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 203 GGGRIVVFDPD-GKLL---------------REIELPVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp TTTEEEEEETT-SCEE---------------EEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred CCCEEEEECCC-ccEE---------------EEEcCCCCCEEEEEEECCCCCEEEEE
Confidence 88999999977 4432 2222223478999994 5544 4444
No 300
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.73 E-value=1.2e-08 Score=111.80 Aligned_cols=220 Identities=16% Similarity=0.237 Sum_probs=159.4
Q ss_pred ccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCC-C-eEE
Q 005277 411 KRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD-R-TAR 488 (704)
Q Consensus 411 ~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~d-g-~i~ 488 (704)
.+.++.+..|....+|++|+-+.++|+.|+..|.|+++++.+|.....+.+|.++|+-+.-+.+|..+++.+.- . -..
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence 34556677899999999999999999999999999999999999999999999999999999999887766532 2 577
Q ss_pred EEECCC-CceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEe-ec---CCCCEEEEEEecCCCEEE
Q 005277 489 IWSMDR-IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF-IG---HRSMILSLAMSPDGRYMA 563 (704)
Q Consensus 489 lwd~~~-~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~-~~---h~~~i~~l~~spdg~~l~ 563 (704)
+|++.. +.+...|. .-.++.|+.....-+.|+......+||+.++..+.++ .+ .+..-++..|+|+..++.
T Consensus 1171 LW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred HhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 899864 44444444 3457888766555566766678999999999877653 21 222346788999988775
Q ss_pred EEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeC
Q 005277 564 SGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSA 643 (704)
Q Consensus 564 sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~ 643 (704)
.|| .+||++..+.+..+...+..+. -.| +|.|..++.-+.
T Consensus 1247 ---ndG--vLWDvR~~~aIh~FD~ft~~~~-G~F----------------------------------HP~g~eVIINSE 1286 (1516)
T KOG1832|consen 1247 ---NDG--VLWDVRIPEAIHRFDQFTDYGG-GGF----------------------------------HPSGNEVIINSE 1286 (1516)
T ss_pred ---eCc--eeeeeccHHHHhhhhhheeccc-ccc----------------------------------cCCCceEEeech
Confidence 466 5799998877776654332111 123 999998887764
Q ss_pred CCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEE
Q 005277 644 DCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFA 696 (704)
Q Consensus 644 Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La 696 (704)
|||+.+-.. +.+.|..+ -..|.|+..|.++.
T Consensus 1287 -----IwD~RTF~l---------------Lh~VP~Ld--qc~VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1287 -----IWDMRTFKL---------------LHSVPSLD--QCAVTFNSTGDVMY 1317 (1516)
T ss_pred -----hhhhHHHHH---------------HhcCcccc--ceEEEeccCccchh
Confidence 899988543 33333322 24566777776553
No 301
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.72 E-value=5.9e-06 Score=89.46 Aligned_cols=186 Identities=13% Similarity=0.077 Sum_probs=122.1
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeE-EEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCee-
Q 005277 432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWD-VQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVD- 509 (704)
Q Consensus 432 ~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~-v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~- 509 (704)
++..++.++.+|.+..+|..+++.+....... .+.+ ... .+..++.++.+|.+..||.++++.+..+......+.
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~ 180 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTL 180 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceee
Confidence 36778888899999999999999887665332 2221 111 345677788899999999999988776653322111
Q ss_pred ----EEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCC----C---EEEEEEec--CCCEEEEEeCCCeEEEEeC
Q 005277 510 ----CVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS----M---ILSLAMSP--DGRYMASGDEDGTIMMWDL 576 (704)
Q Consensus 510 ----~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~----~---i~~l~~sp--dg~~l~sg~~dg~I~iwdl 576 (704)
+... .+..++.++.+|.+..+|.++|+.+........ . ...+.-+| .+..+++++.+|.+..||.
T Consensus 181 ~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~ 258 (377)
T TIGR03300 181 RGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDL 258 (377)
T ss_pred cCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEEC
Confidence 1111 134678888899999999999987765431100 0 00111111 3567888888999999999
Q ss_pred CCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCc
Q 005277 577 ASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTST 656 (704)
Q Consensus 577 ~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~ 656 (704)
.+|+.+...... . .... ...+..++.++.||.|..+|..+++
T Consensus 259 ~tG~~~W~~~~~-~-~~~p------------------------------------~~~~~~vyv~~~~G~l~~~d~~tG~ 300 (377)
T TIGR03300 259 RSGRVLWKRDAS-S-YQGP------------------------------------AVDDNRLYVTDADGVVVALDRRSGS 300 (377)
T ss_pred CCCcEEEeeccC-C-ccCc------------------------------------eEeCCEEEEECCCCeEEEEECCCCc
Confidence 999766444310 0 0000 2346678888899999999999887
Q ss_pred cccc
Q 005277 657 KVLK 660 (704)
Q Consensus 657 ~~~~ 660 (704)
....
T Consensus 301 ~~W~ 304 (377)
T TIGR03300 301 ELWK 304 (377)
T ss_pred EEEc
Confidence 6544
No 302
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=5.4e-07 Score=98.85 Aligned_cols=154 Identities=15% Similarity=0.198 Sum_probs=119.8
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEE
Q 005277 421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI 500 (704)
Q Consensus 421 ~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~ 500 (704)
...++|++++ +++++-|+.+|.|++.+... .. .+...|... ..+|.|+++|+.||++.|..+.+.+....
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 3567777877 78999999999999999873 33 444445443 55899999999999999999988777766
Q ss_pred eccCCCCeeEEEEcCC-----CCEEEEEECCCcEEEEeCC---CCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEE
Q 005277 501 MAGHLSDVDCVRWHIN-----CNYIATGSSDKTVRLWDVS---SGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM 572 (704)
Q Consensus 501 ~~~~~~~V~~v~~~p~-----~~~l~tgs~dg~I~iwd~~---~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~ 572 (704)
+. ...++.+|+++|+ .+.+++|+..| +.++.-+ ....+ ......++|.++.| .|.++|-++.+| |+
T Consensus 109 ~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W--~g~lIAWand~G-v~ 182 (846)
T KOG2066|consen 109 YD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKW--RGNLIAWANDDG-VK 182 (846)
T ss_pred Ee-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEe--cCcEEEEecCCC-cE
Confidence 65 4478999999997 67899999888 7777543 22222 35566789999999 588999998888 99
Q ss_pred EEeCCCCeeeeeecCCCc
Q 005277 573 MWDLASGRCVTPLMGHTS 590 (704)
Q Consensus 573 iwdl~~~~~~~~~~~h~~ 590 (704)
+||+.+++.+..+.....
T Consensus 183 vyd~~~~~~l~~i~~p~~ 200 (846)
T KOG2066|consen 183 VYDTPTRQRLTNIPPPSQ 200 (846)
T ss_pred EEeccccceeeccCCCCC
Confidence 999999988877764433
No 303
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.69 E-value=1.1e-06 Score=84.62 Aligned_cols=201 Identities=15% Similarity=0.098 Sum_probs=129.4
Q ss_pred CCCeEEEEeCCCCc--eeEEeecCCcCeeEEEEcC-----CCCEEEEEeCCCeEEEEECCCCc-eeEEeccCCCCeeEEE
Q 005277 441 ADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNP-----QGHYFASSSHDRTARIWSMDRIQ-PLRIMAGHLSDVDCVR 512 (704)
Q Consensus 441 ~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~v~~sp-----~~~~l~sgs~dg~i~lwd~~~~~-~~~~~~~~~~~V~~v~ 512 (704)
....+-+|++-+.. .+..+. .+.|-| ...+++.|+..|...+|...+.+ .......|...|+-+.
T Consensus 50 ~t~sv~i~~~y~N~~~iv~~y~-------g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~ 122 (344)
T KOG4532|consen 50 KTISVPINSHYSNPKGIVEFYT-------GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVK 122 (344)
T ss_pred ceeeeEeccccCCchhhEEeee-------cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhh
Confidence 33457777776543 233332 344444 45689999999999999998644 3333344444433221
Q ss_pred -EcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCC-ee-eeee-cCC
Q 005277 513 -WHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG-RC-VTPL-MGH 588 (704)
Q Consensus 513 -~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~-~~-~~~~-~~h 588 (704)
..-..--+..++.|.++++.++.-+..-.......-.+.++.+++|++++++.+....|..|.+... .. +... ..-
T Consensus 123 r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t 202 (344)
T KOG4532|consen 123 RYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPT 202 (344)
T ss_pred hhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEeccc
Confidence 1112334667778888888887644332222111123889999999999999999999999988643 22 2212 222
Q ss_pred CceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCcc
Q 005277 589 TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTN 668 (704)
Q Consensus 589 ~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~ 668 (704)
...-.+.+| +.....+|++..||++.|||+.....+..
T Consensus 203 ~D~gF~~S~----------------------------------s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~-------- 240 (344)
T KOG4532|consen 203 SDHGFYNSF----------------------------------SENDLQFAVVFQDGTCAIYDVRNMATPMA-------- 240 (344)
T ss_pred CCCceeeee----------------------------------ccCcceEEEEecCCcEEEEEecccccchh--------
Confidence 233345556 77888999999999999999987543321
Q ss_pred ccccccccCCCCcCeEEEEEccCC
Q 005277 669 RLRSLKTLPTKSTPVYSLQFSRRN 692 (704)
Q Consensus 669 ~~~~l~~~~~~~~~V~~l~fs~~g 692 (704)
....+-+.|.+.+..+.|++-|
T Consensus 241 --~~sstrp~hnGa~R~c~Fsl~g 262 (344)
T KOG4532|consen 241 --EISSTRPHHNGAFRVCRFSLYG 262 (344)
T ss_pred --hhcccCCCCCCceEEEEecCCC
Confidence 1223456789999999999865
No 304
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.66 E-value=4.7e-07 Score=100.24 Aligned_cols=149 Identities=16% Similarity=0.294 Sum_probs=118.8
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeC---------CCeEEEEEC
Q 005277 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH---------DRTARIWSM 492 (704)
Q Consensus 422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~---------dg~i~lwd~ 492 (704)
+.|.-++.+ ++++.+|...|+|.+-|..+.+.+.++..|.+.|.++.. .|+.+++||. |..|+|||+
T Consensus 178 ~~v~imR~N--nr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDL 253 (1118)
T KOG1275|consen 178 SGVTIMRYN--NRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDL 253 (1118)
T ss_pred CceEEEEec--CcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhh
Confidence 346666654 889999999999999999999999999999999987766 6999999973 667899999
Q ss_pred CCCceeEEeccCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCC---CC-cEEEEeecCCCCEEEEEEecCCCEEEEEeC
Q 005277 493 DRIQPLRIMAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVS---SG-ECVRIFIGHRSMILSLAMSPDGRYMASGDE 567 (704)
Q Consensus 493 ~~~~~~~~~~~~~~~V~~v~~~p~-~~~l~tgs~dg~I~iwd~~---~~-~~~~~~~~h~~~i~~l~~spdg~~l~sg~~ 567 (704)
+..+.+.-+.-+.++ .-+.|+|. ...+++.+..|.+.+.|.. +. ..+..+......+..+++|++|+.|+.|..
T Consensus 254 Rmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~ 332 (1118)
T KOG1275|consen 254 RMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDH 332 (1118)
T ss_pred hhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecc
Confidence 887655544444333 56788986 5678889999999999943 22 223334444556999999999999999999
Q ss_pred CCeEEEEe
Q 005277 568 DGTIMMWD 575 (704)
Q Consensus 568 dg~I~iwd 575 (704)
+|.|.+|-
T Consensus 333 ~g~v~~wa 340 (1118)
T KOG1275|consen 333 EGHVNLWA 340 (1118)
T ss_pred cCcEeeec
Confidence 99999997
No 305
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.64 E-value=1.2e-07 Score=94.10 Aligned_cols=148 Identities=14% Similarity=0.201 Sum_probs=117.6
Q ss_pred EEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCC-----ceeEEeccCCCCeeEE
Q 005277 437 LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-----QPLRIMAGHLSDVDCV 511 (704)
Q Consensus 437 ~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~-----~~~~~~~~~~~~V~~v 511 (704)
++.+.+..|-+-|+.++-.. .+. ..+.|.++.|...++.+..|+.+|.|..+|++.. .+...+. |.+.|+++
T Consensus 228 fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtsl 304 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSL 304 (425)
T ss_pred ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhh
Confidence 55566777888898876432 233 5678999999998999999999999999999864 3344443 88999998
Q ss_pred EEcC-CCCEEEEEECCCcEEEEeCCCCcE---EEEeecCCCCEEE--EEEecCCCEEEEEeCCCeEEEEeCCCCeeeeee
Q 005277 512 RWHI-NCNYIATGSSDKTVRLWDVSSGEC---VRIFIGHRSMILS--LAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL 585 (704)
Q Consensus 512 ~~~p-~~~~l~tgs~dg~I~iwd~~~~~~---~~~~~~h~~~i~~--l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~ 585 (704)
..-. ++++|.+.+.+|+|.+||++--++ +..+.||-+.-.- +-+.+....+++++.|...+||.++.|..+.++
T Consensus 305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred hhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence 8766 788999999999999999997666 8999998664322 334556678888999999999999999999887
Q ss_pred cC
Q 005277 586 MG 587 (704)
Q Consensus 586 ~~ 587 (704)
..
T Consensus 385 pf 386 (425)
T KOG2695|consen 385 PF 386 (425)
T ss_pred CC
Confidence 53
No 306
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.64 E-value=4.2e-05 Score=77.48 Aligned_cols=207 Identities=16% Similarity=0.166 Sum_probs=141.6
Q ss_pred EEEEEEcC-CCCEEEEEeCCCc-EEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcC
Q 005277 354 LNCASISQ-DGSLVAGGFSDSS-LKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (704)
Q Consensus 354 V~~~~fs~-dg~~lasg~~dg~-I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 431 (704)
...++.+| .+..+|.+-.-|. ..+||..+........ ...-+.+.|| -.||+
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~--------------------a~~gRHFyGH------g~fs~ 60 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW--------------------APPGRHFYGH------GVFSP 60 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc--------------------CCCCCEEecC------EEEcC
Confidence 34567788 5667777777665 6778876633222111 1122445666 46999
Q ss_pred CCCEEEEEe-----CCCeEEEEeCC-CCceeEEeecCCcCeeEEEEcCCCCEEEEEe------------------CCCeE
Q 005277 432 LGDFILSSS-----ADTTIRLWSTK-LNANLVCYKGHNYPVWDVQFNPQGHYFASSS------------------HDRTA 487 (704)
Q Consensus 432 ~~~~l~s~s-----~Dg~I~lwd~~-~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs------------------~dg~i 487 (704)
||++|++.- ..|.|-|||.. +...+..+..|.-.-..+.+.|+|..|+++. .+-++
T Consensus 61 dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL 140 (305)
T PF07433_consen 61 DGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSL 140 (305)
T ss_pred CCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCce
Confidence 999999863 45889999999 6677888888877778899999998888763 23345
Q ss_pred EEEECCCCceeEE--e--ccCCCCeeEEEEcCCCCEEEEEECCCc-------EEEEeCCCCcEEEEee-------cCCCC
Q 005277 488 RIWSMDRIQPLRI--M--AGHLSDVDCVRWHINCNYIATGSSDKT-------VRLWDVSSGECVRIFI-------GHRSM 549 (704)
Q Consensus 488 ~lwd~~~~~~~~~--~--~~~~~~V~~v~~~p~~~~l~tgs~dg~-------I~iwd~~~~~~~~~~~-------~h~~~ 549 (704)
.+.|..+++.+.. + ..|...|..+++.++|..++..-..|. |.+++ .+..+..+. .-.+.
T Consensus 141 ~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y 218 (305)
T PF07433_consen 141 VYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGY 218 (305)
T ss_pred EEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCc
Confidence 5666777776655 3 237778999999999876665443332 34443 233233222 33578
Q ss_pred EEEEEEecCCCEEEEEe-CCCeEEEEeCCCCeeeeeecCC
Q 005277 550 ILSLAMSPDGRYMASGD-EDGTIMMWDLASGRCVTPLMGH 588 (704)
Q Consensus 550 i~~l~~spdg~~l~sg~-~dg~I~iwdl~~~~~~~~~~~h 588 (704)
+-+|+++++|.++++.+ ..|.+.+||..+++.+....-.
T Consensus 219 ~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~ 258 (305)
T PF07433_consen 219 IGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP 258 (305)
T ss_pred eEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC
Confidence 99999999998876555 6678999999999988766533
No 307
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.63 E-value=7.9e-06 Score=80.20 Aligned_cols=203 Identities=14% Similarity=0.155 Sum_probs=115.0
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCC-
Q 005277 355 NCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG- 433 (704)
Q Consensus 355 ~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~- 433 (704)
.-++||||+.+||.+...|+|+++|+.+........ .. .....-+..|-++.|.+..
T Consensus 47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p---~~-------------------~~~~d~~~Aiagl~Fl~~~~ 104 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPP---AM-------------------SFPGDLSDAIAGLIFLEYKK 104 (282)
T ss_pred eEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCc---cc-------------------ccCCccccceeeeEeecccc
Confidence 457899999999999999999999987522111100 00 0001123556666665432
Q ss_pred -----CEEEEEeCCCeEEEEeCCC-----CceeEEee--c-CCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEE
Q 005277 434 -----DFILSSSADTTIRLWSTKL-----NANLVCYK--G-HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI 500 (704)
Q Consensus 434 -----~~l~s~s~Dg~I~lwd~~~-----~~~~~~~~--~-h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~ 500 (704)
..|++-..+|.++-|-+.. .+....+. . +...|.++.++|..+.|++||.... +.+ .
T Consensus 105 s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~-~--- 174 (282)
T PF15492_consen 105 SAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDG-M--- 174 (282)
T ss_pred ccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCc-c---
Confidence 1355666677777766532 22233332 2 3678999999999888888764322 000 0
Q ss_pred eccCCCCeeEEEEcCCCCE-E-EEEECCC------cEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEE
Q 005277 501 MAGHLSDVDCVRWHINCNY-I-ATGSSDK------TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM 572 (704)
Q Consensus 501 ~~~~~~~V~~v~~~p~~~~-l-~tgs~dg------~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~ 572 (704)
-......+++-..-.+..+ . ++...|+ +-.+|.+-+.+...........|..|..||||..||+...+|.|.
T Consensus 175 s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~ls 254 (282)
T PF15492_consen 175 SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLS 254 (282)
T ss_pred ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEE
Confidence 0011111222111111111 1 1111111 123333333222221223457899999999999999999999999
Q ss_pred EEeCCCCeeeeeecCCC
Q 005277 573 MWDLASGRCVTPLMGHT 589 (704)
Q Consensus 573 iwdl~~~~~~~~~~~h~ 589 (704)
+|++.+-+.......+.
T Consensus 255 LW~iPsL~~~~~W~~~e 271 (282)
T PF15492_consen 255 LWEIPSLRLQRSWKQDE 271 (282)
T ss_pred EEecCcchhhcccchhh
Confidence 99999887777665443
No 308
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=2.9e-06 Score=93.24 Aligned_cols=180 Identities=14% Similarity=0.263 Sum_probs=132.0
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcC
Q 005277 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (704)
Q Consensus 352 ~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 431 (704)
+.++|++++ ++++|.|+-+|.|++++.... . .....|+.. ..
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-----------------------------~-~~~~~~s~~------~~ 81 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGN-----------------------------P-KTNFDHSSS------IL 81 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCc-----------------------------c-ccccccccc------cc
Confidence 446677775 578999999999999997641 1 122234433 56
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCC-----CCEEEEEeCCCeEEEEECC---CCceeEEecc
Q 005277 432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ-----GHYFASSSHDRTARIWSMD---RIQPLRIMAG 503 (704)
Q Consensus 432 ~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~-----~~~l~sgs~dg~i~lwd~~---~~~~~~~~~~ 503 (704)
+|.+++|||.||+|.|-.+.+.+...++. ...++.+|+++|+ .+.|++||.-| +.++.-+ ....+ ....
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~ 158 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSE 158 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeec
Confidence 79999999999999999999988888776 4568999999997 57899999888 7776432 11222 3455
Q ss_pred CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCC------EEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 005277 504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM------ILSLAMSPDGRYMASGDEDGTIMMWDLA 577 (704)
Q Consensus 504 ~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~------i~~l~~spdg~~l~sg~~dg~I~iwdl~ 577 (704)
..++|.++.|+ |++||-++.+| |++||+.+++.+..+...... ...+.|.++.+ |+.|=.| +|+|..++
T Consensus 159 ~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 159 GEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGWGD-SVKICSIK 233 (846)
T ss_pred CccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEecCC-eEEEEEEe
Confidence 67899999995 77999987666 999999998887766543332 34577776554 5555444 68888887
No 309
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.59 E-value=1.4e-07 Score=90.38 Aligned_cols=162 Identities=18% Similarity=0.233 Sum_probs=105.3
Q ss_pred ccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee-EEeecCCcCeeEEEEcCCCCEEEEEe-----CCCeEEEE
Q 005277 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL-VCYKGHNYPVWDVQFNPQGHYFASSS-----HDRTARIW 490 (704)
Q Consensus 417 ~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~-~~~~~h~~~V~~v~~sp~~~~l~sgs-----~dg~i~lw 490 (704)
+.-|+++-.+-+.+--+..++++..||.+.+.+.+.-..+ ..+..-...-.+.+....+..+.++. .-+..+.|
T Consensus 85 ~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~ 164 (319)
T KOG4714|consen 85 LAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYAN 164 (319)
T ss_pred eeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeee
Confidence 3345544444344444667999999999999998752111 11111111112233333455555443 22345666
Q ss_pred ECCCCceeEEeccCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCc-EEEEeecCCCCEEEEEEec-CCCEEEEEeC
Q 005277 491 SMDRIQPLRIMAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGE-CVRIFIGHRSMILSLAMSP-DGRYMASGDE 567 (704)
Q Consensus 491 d~~~~~~~~~~~~~~~~V~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~-~~~~~~~h~~~i~~l~~sp-dg~~l~sg~~ 567 (704)
+++..+....-......|.+++-||. .+.+++|+.||.+.+||.++.. ++..+..|+.+|..+-|+| ++..|+++++
T Consensus 165 ~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~se 244 (319)
T KOG4714|consen 165 TLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSE 244 (319)
T ss_pred cccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecC
Confidence 66544333222223345999999996 4567788999999999999763 3445678999999999999 6889999999
Q ss_pred CCeEEEEeCCC
Q 005277 568 DGTIMMWDLAS 578 (704)
Q Consensus 568 dg~I~iwdl~~ 578 (704)
||.+.-||..+
T Consensus 245 dGslw~wdas~ 255 (319)
T KOG4714|consen 245 DGSLWHWDAST 255 (319)
T ss_pred CCcEEEEcCCC
Confidence 99999999764
No 310
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.51 E-value=0.00016 Score=73.32 Aligned_cols=199 Identities=14% Similarity=0.134 Sum_probs=137.9
Q ss_pred eEEEEEcC-CCCEEEEEeCCCe-EEEEeCCCCceeEEeecCCcCe--eEEEEcCCCCEEEEE-----eCCCeEEEEECC-
Q 005277 424 VYSASFSP-LGDFILSSSADTT-IRLWSTKLNANLVCYKGHNYPV--WDVQFNPQGHYFASS-----SHDRTARIWSMD- 493 (704)
Q Consensus 424 V~~l~~sp-~~~~l~s~s~Dg~-I~lwd~~~~~~~~~~~~h~~~V--~~v~~sp~~~~l~sg-----s~dg~i~lwd~~- 493 (704)
.-.++.+| ....++.+-.-|+ ..+||..+++....+....+.- -.-.|+++|++|++. +..|.|-|||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 34577888 4455667777666 6779999988876665322221 135799999999986 356899999998
Q ss_pred CCceeEEeccCCCCeeEEEEcCCCCEEEEEE------------------CCCcEEEEeCCCCcEEEEee----cCCCCEE
Q 005277 494 RIQPLRIMAGHLSDVDCVRWHINCNYIATGS------------------SDKTVRLWDVSSGECVRIFI----GHRSMIL 551 (704)
Q Consensus 494 ~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs------------------~dg~I~iwd~~~~~~~~~~~----~h~~~i~ 551 (704)
+.+.+..+..|.-.-..+.+.|+|..|+++. ++.++...|..+|+.+.... -|...|.
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiR 166 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIR 166 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccccee
Confidence 6677778887777777888999998777753 23456777888898877643 3777899
Q ss_pred EEEEecCCCEEEEEeCCC-------eEEEEeCCCCeeeeeec-------CCCceeeeeeeeeeehccccccccccccccc
Q 005277 552 SLAMSPDGRYMASGDEDG-------TIMMWDLASGRCVTPLM-------GHTSCVWTLAYRFLLLVTNAYLKISDKVSTG 617 (704)
Q Consensus 552 ~l~~spdg~~l~sg~~dg-------~I~iwdl~~~~~~~~~~-------~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~ 617 (704)
.+++.++|..++..-..| .|-+++. +..+..+. .-.+.+-++++
T Consensus 167 HLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~-------------------- 224 (305)
T PF07433_consen 167 HLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAA-------------------- 224 (305)
T ss_pred eEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEE--------------------
Confidence 999999998777655444 2333432 22222221 22355666666
Q ss_pred eeeeeeeEEeecccCCCCCEEEEE-eCCCcEEEEeCCCCccc
Q 005277 618 FLFYSLTIIYFGCASCEGSLLASG-SADCTVKLWDVTTSTKV 658 (704)
Q Consensus 618 ~~~~~~~~~~~~~~s~~g~~lasg-s~Dg~V~iWd~~~~~~~ 658 (704)
+.++.++++. -.-|.+.+||..++..+
T Consensus 225 --------------~~~g~~ia~tsPrGg~~~~~d~~tg~~~ 252 (305)
T PF07433_consen 225 --------------DRDGRLIAVTSPRGGRVAVWDAATGRLL 252 (305)
T ss_pred --------------eCCCCEEEEECCCCCEEEEEECCCCCEe
Confidence 8888877544 46789999999988654
No 311
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=1.5e-05 Score=88.33 Aligned_cols=213 Identities=10% Similarity=0.112 Sum_probs=144.3
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC-eEEEEEcC
Q 005277 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP-VYSASFSP 431 (704)
Q Consensus 353 ~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~l~~sp 431 (704)
.|+| |++.+..+|.|+.+|.|.+.+-. ....+.++.+... |..+....
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s-----------------------------~~~~~~fqa~~~siv~~L~~~~ 75 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNSS-----------------------------FQLIRGFQAYEQSIVQFLYILN 75 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEeccc-----------------------------ceeeehheecchhhhhHhhccc
Confidence 4554 56888899999999999887733 1223445566666 44444443
Q ss_pred CCCEEEEEeCCC-----eEEEEeCCCC------cee--EEeec-----CCcCeeEEEEcCCCCEEEEEeCCCeEEEEECC
Q 005277 432 LGDFILSSSADT-----TIRLWSTKLN------ANL--VCYKG-----HNYPVWDVQFNPQGHYFASSSHDRTARIWSMD 493 (704)
Q Consensus 432 ~~~~l~s~s~Dg-----~I~lwd~~~~------~~~--~~~~~-----h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~ 493 (704)
+..+|++.+.|+ .+++|+++.- .++ ..+.+ ...|+.+++.+.+-+.+|+|-.+|.|..+.-+
T Consensus 76 ~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GD 155 (933)
T KOG2114|consen 76 KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGD 155 (933)
T ss_pred CceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCc
Confidence 346788777664 4899998632 223 11112 35678999999999999999999999998532
Q ss_pred ----CCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCc-EEEEeecCCCCEEEEEEecCCCEEEEEeCC
Q 005277 494 ----RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE-CVRIFIGHRSMILSLAMSPDGRYMASGDED 568 (704)
Q Consensus 494 ----~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~-~~~~~~~h~~~i~~l~~spdg~~l~sg~~d 568 (704)
.+...........+|+.+.+..++..++....-..|.+|.+.... .......|+..+.|..+++....+++++..
T Consensus 156 i~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e 235 (933)
T KOG2114|consen 156 ILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSE 235 (933)
T ss_pred chhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCc
Confidence 233333334456799999999888774444445679999987433 244466778899999999765546555544
Q ss_pred CeEEEEeCCCCeeeeeec-CCCceeeeeee
Q 005277 569 GTIMMWDLASGRCVTPLM-GHTSCVWTLAY 597 (704)
Q Consensus 569 g~I~iwdl~~~~~~~~~~-~h~~~V~sl~~ 597 (704)
.+.+||.....+-..+. +|......+.+
T Consensus 236 -~l~fY~sd~~~~cfaf~~g~kk~~~~~~~ 264 (933)
T KOG2114|consen 236 -FLYFYDSDGRGPCFAFEVGEKKEMLVFSF 264 (933)
T ss_pred -eEEEEcCCCcceeeeecCCCeEEEEEEec
Confidence 69999987666666666 77765555544
No 312
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=2.6e-06 Score=87.61 Aligned_cols=246 Identities=15% Similarity=0.154 Sum_probs=165.9
Q ss_pred CccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC--C-ceeEEeecCCcCeeEEEEcCCCCEEEEEeC-CCeEEEEECCCC
Q 005277 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKL--N-ANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DRTARIWSMDRI 495 (704)
Q Consensus 420 h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~--~-~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~-dg~i~lwd~~~~ 495 (704)
|...|+.+.-. -.+++++++.||.++.|--.. + ..+..+..|...|.+++.+-++..+.|.+. |..++++|+++.
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 77777776554 467899999999999997653 1 334556788999999999999999999877 999999999876
Q ss_pred ceeEEeccC--CCCeeEEEEcCCC---CEEEEE-ECCCcEEEEeCCCCc-EEE-EeecCCCCEEEEEEecCCCEEEEEeC
Q 005277 496 QPLRIMAGH--LSDVDCVRWHINC---NYIATG-SSDKTVRLWDVSSGE-CVR-IFIGHRSMILSLAMSPDGRYMASGDE 567 (704)
Q Consensus 496 ~~~~~~~~~--~~~V~~v~~~p~~---~~l~tg-s~dg~I~iwd~~~~~-~~~-~~~~h~~~i~~l~~spdg~~l~sg~~ 567 (704)
..+..+.-. .+.+.++ +..| ..|+++ -.+|.|.++|-.... ... .-.-|..+|.++.++|-+..+++...
T Consensus 87 DminmiKL~~lPg~a~wv--~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~ 164 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEWV--TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI 164 (558)
T ss_pred chhhhcccccCCCceEEe--cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc
Confidence 555333311 1222222 2222 134443 367899999987543 222 23458999999999999999999999
Q ss_pred CCeEEEEeCCC------Ceeeeeec---------CCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccC
Q 005277 568 DGTIMMWDLAS------GRCVTPLM---------GHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCAS 632 (704)
Q Consensus 568 dg~I~iwdl~~------~~~~~~~~---------~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 632 (704)
.|.|..|.... .+....++ .......++.+ +
T Consensus 165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Ef----------------------------------s 210 (558)
T KOG0882|consen 165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEF----------------------------------S 210 (558)
T ss_pred cceeEeecCCCcccCccccccccccccchhhcccccccCccceEE----------------------------------c
Confidence 99999998763 11111111 11122334444 9
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCccccccccccCcc--------ccc---------cccccCCC-CcCeEEEEEccCCcE
Q 005277 633 CEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTN--------RLR---------SLKTLPTK-STPVYSLQFSRRNLL 694 (704)
Q Consensus 633 ~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~--------~~~---------~l~~~~~~-~~~V~~l~fs~~g~~ 694 (704)
|+|..+.+-+.|..|+++++.++..+..+.+..... .+. .-..+..+ ..+-....|...|.+
T Consensus 211 p~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~f 290 (558)
T KOG0882|consen 211 PDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNF 290 (558)
T ss_pred cccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCE
Confidence 999999999999999999999998877664421100 000 00111122 344567889999999
Q ss_pred EEEeecCC
Q 005277 695 FAAGALSK 702 (704)
Q Consensus 695 La~gs~dg 702 (704)
|..|+.-|
T Consensus 291 lly~t~~g 298 (558)
T KOG0882|consen 291 LLYGTILG 298 (558)
T ss_pred EEeeccee
Confidence 98887543
No 313
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.42 E-value=4.6e-05 Score=87.69 Aligned_cols=201 Identities=14% Similarity=0.177 Sum_probs=135.6
Q ss_pred eCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEE
Q 005277 349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS 428 (704)
Q Consensus 349 ~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 428 (704)
+..+.|.++.|-.++.-++.++.+|.|.+-|..+.. ......-.+.|.+++
T Consensus 66 ~gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~-----------------------------~eivg~vd~GI~aas 116 (1265)
T KOG1920|consen 66 DGDDEIVSVQFLADTNSICVITALGDIILVDPETLE-----------------------------LEIVGNVDNGISAAS 116 (1265)
T ss_pred CCCcceEEEEEecccceEEEEecCCcEEEEcccccc-----------------------------eeeeeeccCceEEEe
Confidence 344679999999999999999999999998765421 111122357899999
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCC----C-------------------CceeEEeecCCc---------------------
Q 005277 429 FSPLGDFILSSSADTTIRLWSTK----L-------------------NANLVCYKGHNY--------------------- 464 (704)
Q Consensus 429 ~sp~~~~l~s~s~Dg~I~lwd~~----~-------------------~~~~~~~~~h~~--------------------- 464 (704)
|+||.+.++..+..+++.+-+-. . |+.-..++|..+
T Consensus 117 wS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~ 196 (1265)
T KOG1920|consen 117 WSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDD 196 (1265)
T ss_pred ecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhcc
Confidence 99999999988888887765421 0 111112322111
Q ss_pred CeeEEEEcCCCCEEEEEe----CC-CeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEE---CCCcEEEEeCCC
Q 005277 465 PVWDVQFNPQGHYFASSS----HD-RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS---SDKTVRLWDVSS 536 (704)
Q Consensus 465 ~V~~v~~sp~~~~l~sgs----~d-g~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs---~dg~I~iwd~~~ 536 (704)
.=++|.|--||.+||+.. .+ +.+++||-+ +..-..-....+--.+++|-|.|..+++-. +|+.|.+|.- +
T Consensus 197 ~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-N 274 (1265)
T KOG1920|consen 197 HKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-N 274 (1265)
T ss_pred CCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-C
Confidence 123589999999999843 33 899999987 322222222333446899999999998843 5667888874 4
Q ss_pred CcEEEE----eecCCCCEEEEEEecCCCEEEE---EeCCCeEEEEeCCCCe
Q 005277 537 GECVRI----FIGHRSMILSLAMSPDGRYMAS---GDEDGTIMMWDLASGR 580 (704)
Q Consensus 537 ~~~~~~----~~~h~~~i~~l~~spdg~~l~s---g~~dg~I~iwdl~~~~ 580 (704)
|-.... +......|..++|+.++..|++ ......|++|-+.+..
T Consensus 275 GL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 275 GLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred CccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 432222 2233345899999999999987 5555569999887653
No 314
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.42 E-value=8.6e-07 Score=61.40 Aligned_cols=39 Identities=62% Similarity=1.108 Sum_probs=37.0
Q ss_pred CcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEe
Q 005277 537 GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD 575 (704)
Q Consensus 537 ~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwd 575 (704)
|+++..+.+|.+.|.+++|+|++.+|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 315
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.39 E-value=0.00011 Score=80.14 Aligned_cols=187 Identities=10% Similarity=-0.034 Sum_probs=118.1
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCee-EEEEcC--CCCEEEEEeCCCeEEEEECCCCceeEEeccCCC---
Q 005277 433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVW-DVQFNP--QGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS--- 506 (704)
Q Consensus 433 ~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~-~v~~sp--~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~--- 506 (704)
+..++.++.+|.+..+|..+++.+..+......+. ...-+| .+..++.++.+|.+..+|..+++.+........
T Consensus 160 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~ 239 (394)
T PRK11138 160 DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGA 239 (394)
T ss_pred CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCc
Confidence 44577788889999999999998887764311100 000122 233567778889999999998877655431100
Q ss_pred ----CeeEEEEcC--CCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCe
Q 005277 507 ----DVDCVRWHI--NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR 580 (704)
Q Consensus 507 ----~V~~v~~~p--~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~ 580 (704)
....+.-+| .+..+++++.+|.+..+|..+|+.+..... .....+.. .+..|+.++.+|.+..+|..+|+
T Consensus 240 ~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~ 315 (394)
T PRK11138 240 TEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGV 315 (394)
T ss_pred cchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcEE--ECCEEEEEcCCCeEEEEECCCCc
Confidence 011111122 355777788899999999999988765432 11122222 46678888899999999999987
Q ss_pred eeeeecCCCcee-eeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccc
Q 005277 581 CVTPLMGHTSCV-WTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVL 659 (704)
Q Consensus 581 ~~~~~~~h~~~V-~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~ 659 (704)
.+-....-.... .+. ...+..|+.++.||.|++.|..+++...
T Consensus 316 ~~W~~~~~~~~~~~sp------------------------------------~v~~g~l~v~~~~G~l~~ld~~tG~~~~ 359 (394)
T PRK11138 316 ELWSQSDLLHRLLTAP------------------------------------VLYNGYLVVGDSEGYLHWINREDGRFVA 359 (394)
T ss_pred EEEcccccCCCcccCC------------------------------------EEECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 654332111110 000 1125678889999999999999887543
No 316
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=1.7e-05 Score=80.77 Aligned_cols=81 Identities=12% Similarity=0.297 Sum_probs=70.8
Q ss_pred eeeccCCccCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCC-CEEEEEeCCCeEEEEE
Q 005277 414 YTLYQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWS 491 (704)
Q Consensus 414 ~~~~~~h~~~V~~l~~sp~~~-~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~-~~l~sgs~dg~i~lwd 491 (704)
...+.+|...|.+++|+|..+ ++..++.+..|+|.|+++...+..+..+ .++|+++|.-+. +++..|...|.|.+||
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD 264 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYD 264 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEE
Confidence 446778889999999999888 6779999999999999999999999888 799999999854 5677778999999999
Q ss_pred CCCC
Q 005277 492 MDRI 495 (704)
Q Consensus 492 ~~~~ 495 (704)
++..
T Consensus 265 ~R~~ 268 (463)
T KOG1645|consen 265 MRQP 268 (463)
T ss_pred ccCC
Confidence 9853
No 317
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.38 E-value=1.7e-05 Score=87.27 Aligned_cols=111 Identities=12% Similarity=0.123 Sum_probs=86.1
Q ss_pred EEEEEEcCCCCEEEEEeC----CCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEE
Q 005277 354 LNCASISQDGSLVAGGFS----DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (704)
Q Consensus 354 V~~~~fs~dg~~lasg~~----dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 429 (704)
-+-..|+|...++|+++- .|+|.||--.+.+ ..-... .-.+++++|
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfadtGEP---------------------------qr~Vt~---P~hatSLCW 67 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFADTGEP---------------------------QRDVTY---PVHATSLCW 67 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEecCCCC---------------------------Cccccc---ceehhhhcc
Confidence 344578898888888764 5788888532210 000111 123567999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 005277 430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR 494 (704)
Q Consensus 430 sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~ 494 (704)
+|..-.|++|-.-|.+.+|...+.+.-.....|..+|..+.||++|..++++..-|.+.+|..+.
T Consensus 68 Hpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 68 HPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred ChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 99888888999999999999988777777778999999999999999999999999999998873
No 318
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.38 E-value=6.8e-06 Score=91.37 Aligned_cols=180 Identities=13% Similarity=0.132 Sum_probs=134.4
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEE
Q 005277 433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR 512 (704)
Q Consensus 433 ~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~ 512 (704)
+..++.|+.-..+..+|+++.+......-..+.|.-+.. +++++.+|...|+|.+-|.++.+.+..+..|.+.|..+.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD 224 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD 224 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence 345666666667888899988777666544545655554 689999999999999999999999999999999998776
Q ss_pred EcCCCCEEEEEE---------CCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecC-CCEEEEEeCCCeEEEEeCC---CC
Q 005277 513 WHINCNYIATGS---------SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD-GRYMASGDEDGTIMMWDLA---SG 579 (704)
Q Consensus 513 ~~p~~~~l~tgs---------~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spd-g~~l~sg~~dg~I~iwdl~---~~ 579 (704)
. .|+.|++++ .|..|.+||+|.-+.+.-+.-+.++ .-+.|.|. ...+++++..|...+-|.. +.
T Consensus 225 v--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP 301 (1118)
T KOG1275|consen 225 V--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP 301 (1118)
T ss_pred c--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCC
Confidence 4 678888876 3667999999987766544444443 45677774 4578888899999999933 22
Q ss_pred -eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEe
Q 005277 580 -RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWD 651 (704)
Q Consensus 580 -~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd 651 (704)
..+..+..-+..+..+++ |++|+.++.|..+|.|.+|.
T Consensus 302 ~~~~~~v~p~~s~i~~fDi----------------------------------Ssn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 302 PAGVKMVNPNGSGISAFDI----------------------------------SSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccceeEEccCCCcceeEEe----------------------------------cCCCceEEEecccCcEeeec
Confidence 112222223344666666 99999999999999999998
No 319
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.35 E-value=0.00018 Score=72.12 Aligned_cols=145 Identities=14% Similarity=0.130 Sum_probs=102.5
Q ss_pred CCeEEEEeCCCCceeEEeecCCcCeeEEE--EcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCE
Q 005277 442 DTTIRLWSTKLNANLVCYKGHNYPVWDVQ--FNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNY 519 (704)
Q Consensus 442 Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~--~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~ 519 (704)
+|+|..||..+++.+..+..-. .+.... ..+++..+++++.++.+..||..+++.+..+.. ...+...- ...+..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGP-GIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSS-SCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCC-CCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccc
Confidence 6899999999999988886411 122222 233566788888999999999999998877765 23222221 234567
Q ss_pred EEEEECCCcEEEEeCCCCcEEEEe-ecCC---CCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCC
Q 005277 520 IATGSSDKTVRLWDVSSGECVRIF-IGHR---SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT 589 (704)
Q Consensus 520 l~tgs~dg~I~iwd~~~~~~~~~~-~~h~---~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~ 589 (704)
+++++.++.|+.+|..+|+.+... .... ..........++..++++..+|.|..+|+.+|+.+.......
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~ 152 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGE 152 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESST
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCC
Confidence 777778899999999999998884 3221 122333344458889999989999999999999987776533
No 320
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=2.7e-06 Score=87.51 Aligned_cols=273 Identities=14% Similarity=0.119 Sum_probs=177.5
Q ss_pred eCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEE
Q 005277 349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS 428 (704)
Q Consensus 349 ~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 428 (704)
-|++.|+.+.- .-.+++.+++.||.++.|.-... .....+..+..|-+.|.+++
T Consensus 7 mhrd~i~hv~~-tka~fiiqASlDGh~KFWkKs~i-------------------------sGvEfVKhFraHL~~I~sl~ 60 (558)
T KOG0882|consen 7 MHRDVITHVFP-TKAKFIIQASLDGHKKFWKKSRI-------------------------SGVEFVKHFRAHLGVILSLA 60 (558)
T ss_pred cccceeeeEee-ehhheEEeeecchhhhhcCCCCc-------------------------cceeehhhhHHHHHHHHhhh
Confidence 35566665544 34679999999999999974320 01234455678999999999
Q ss_pred EcCCCCEEEEEeC-CCeEEEEeCCCCceeEEeecCCcCeeEEEEc-CCC---CEEEE-EeCCCeEEEEECCCCc-ee-EE
Q 005277 429 FSPLGDFILSSSA-DTTIRLWSTKLNANLVCYKGHNYPVWDVQFN-PQG---HYFAS-SSHDRTARIWSMDRIQ-PL-RI 500 (704)
Q Consensus 429 ~sp~~~~l~s~s~-Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~s-p~~---~~l~s-gs~dg~i~lwd~~~~~-~~-~~ 500 (704)
.+-++.++.|.+. |..++++|+.+...+..++.-.-|= .+.|. ..| ..+++ .-.++.+.++|-.... +. ..
T Consensus 61 ~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg-~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~f 139 (558)
T KOG0882|consen 61 VSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPG-FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYF 139 (558)
T ss_pred ccccceeEeeccCcccceeEEEeeccchhhhcccccCCC-ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCcccee
Confidence 9999998889777 9999999998765553333221111 12222 122 12333 3467899999976543 33 33
Q ss_pred eccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC------CcE---------EEEeecCCCCEEEEEEecCCCEEEEE
Q 005277 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS------GEC---------VRIFIGHRSMILSLAMSPDGRYMASG 565 (704)
Q Consensus 501 ~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~------~~~---------~~~~~~h~~~i~~l~~spdg~~l~sg 565 (704)
-.-|.++|.++.+.|-+..+++....|.|.-|.... .+. +..+...+...+++.|+|+|..+.+-
T Consensus 140 kklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl 219 (558)
T KOG0882|consen 140 KKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTL 219 (558)
T ss_pred cccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCccccc
Confidence 346999999999999999999999999999998762 111 11223345678899999999999999
Q ss_pred eCCCeEEEEeCCCCeeeeeecC-----C-----CceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCC
Q 005277 566 DEDGTIMMWDLASGRCVTPLMG-----H-----TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEG 635 (704)
Q Consensus 566 ~~dg~I~iwdl~~~~~~~~~~~-----h-----~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g 635 (704)
+.|..|++++..+|+.++.+.. | .-.+..+.|.-...... ... -.....-...|+...|
T Consensus 220 ~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaver---------ele--k~~~~~~~~~~fdes~ 288 (558)
T KOG0882|consen 220 NPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVER---------ELE--KHGSTVGTNAVFDESG 288 (558)
T ss_pred CcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHh---------hHh--hhcCcccceeEEcCCC
Confidence 9999999999999988876632 1 11223333311000000 000 0111112233457788
Q ss_pred CEEEEEeCCCcEEEEeCCCCccccc
Q 005277 636 SLLASGSADCTVKLWDVTTSTKVLK 660 (704)
Q Consensus 636 ~~lasgs~Dg~V~iWd~~~~~~~~~ 660 (704)
++|+-|+-=| |+|.++.++.....
T Consensus 289 ~flly~t~~g-ikvin~~tn~v~ri 312 (558)
T KOG0882|consen 289 NFLLYGTILG-IKVINLDTNTVVRI 312 (558)
T ss_pred CEEEeeccee-EEEEEeecCeEEEE
Confidence 8888887653 78888888765543
No 321
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=8.5e-05 Score=82.64 Aligned_cols=169 Identities=15% Similarity=0.193 Sum_probs=114.8
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcC-eeEEEEcCCCCEEEEEeCCC-----eEEEEECCCC------
Q 005277 428 SFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYP-VWDVQFNPQGHYFASSSHDR-----TARIWSMDRI------ 495 (704)
Q Consensus 428 ~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~-V~~v~~sp~~~~l~sgs~dg-----~i~lwd~~~~------ 495 (704)
+|++.+..++.|+.+|.|.+.+-. .+.+..++.+... |..+....+..++++.+.|+ .+++|+++..
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 467788899999999998887754 3444667777666 44444433446777766554 5899999643
Q ss_pred cee---EEec----cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC----CCcEEEEeecCCCCEEEEEEecCCCEEEE
Q 005277 496 QPL---RIMA----GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS----SGECVRIFIGHRSMILSLAMSPDGRYMAS 564 (704)
Q Consensus 496 ~~~---~~~~----~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~----~~~~~~~~~~h~~~i~~l~~spdg~~l~s 564 (704)
.++ +.+. ....++.+++.|.+-+.+|+|-.+|.|..+.-. .|...........+|+.+++..++..++-
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 222 2222 134678899999999999999999999998421 12222223344679999999999987444
Q ss_pred EeCCCeEEEEeCCCCee-eeeecCCCceeeeeee
Q 005277 565 GDEDGTIMMWDLASGRC-VTPLMGHTSCVWTLAY 597 (704)
Q Consensus 565 g~~dg~I~iwdl~~~~~-~~~~~~h~~~V~sl~~ 597 (704)
+.....|.+|.+....+ ...+..|+.++.|.++
T Consensus 189 v~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~ 222 (933)
T KOG2114|consen 189 VATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSF 222 (933)
T ss_pred EEecceeEEEEecCCCcceeeeccCCccceeeec
Confidence 44455799999874332 4456777778887776
No 322
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.32 E-value=1.8e-06 Score=59.79 Aligned_cols=38 Identities=29% Similarity=0.725 Sum_probs=36.2
Q ss_pred ceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEE
Q 005277 454 ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS 491 (704)
Q Consensus 454 ~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd 491 (704)
+++..+.+|..+|++++|+|++.+|++|+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56788999999999999999999999999999999997
No 323
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.26 E-value=0.00025 Score=76.47 Aligned_cols=112 Identities=22% Similarity=0.313 Sum_probs=82.1
Q ss_pred eeEEEEcC-CCCEEEEE----eCCCe----EEEEECCCCceeEE---eccCCCCeeEEEEcCCCCEEEEEECCCcEEEEe
Q 005277 466 VWDVQFNP-QGHYFASS----SHDRT----ARIWSMDRIQPLRI---MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWD 533 (704)
Q Consensus 466 V~~v~~sp-~~~~l~sg----s~dg~----i~lwd~~~~~~~~~---~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd 533 (704)
..++.|+- +++.+.+. +.+|. -.+|++...+..+. --...+.|.|++++|+...++.|+.||+|.+||
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD 287 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD 287 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence 35777776 44445543 23443 34566654432211 124678899999999999999999999999999
Q ss_pred CCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCC
Q 005277 534 VSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579 (704)
Q Consensus 534 ~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~ 579 (704)
...+... +....-.++.++|+|+|..+++|+..|.+.+||+.-.
T Consensus 288 ~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 288 TTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred cCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 8777433 3344567889999999999999999999999998754
No 324
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.25 E-value=0.00081 Score=72.00 Aligned_cols=204 Identities=19% Similarity=0.223 Sum_probs=111.0
Q ss_pred cCCCCEEEEEeC---------CCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEc
Q 005277 360 SQDGSLVAGGFS---------DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (704)
Q Consensus 360 s~dg~~lasg~~---------dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 430 (704)
|||+++++.... .+.+.|||+.+.. ...+......+....||
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~-----------------------------~~~l~~~~~~~~~~~~s 51 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGE-----------------------------ITPLTPPPPKLQDAKWS 51 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTE-----------------------------EEESS-EETTBSEEEE-
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCc-----------------------------eEECcCCccccccceee
Confidence 688888877432 3567788877521 12222225678899999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCceeEE-eec-------C---------CcCeeEEEEcCCCCEEEEEeCC-C-------
Q 005277 431 PLGDFILSSSADTTIRLWSTKLNANLVC-YKG-------H---------NYPVWDVQFNPQGHYFASSSHD-R------- 485 (704)
Q Consensus 431 p~~~~l~s~s~Dg~I~lwd~~~~~~~~~-~~~-------h---------~~~V~~v~~sp~~~~l~sgs~d-g------- 485 (704)
|+|+.++-.. ++.|.+++..++...+. ..+ - -..-..+.|||++++|+....| .
T Consensus 52 P~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~ 130 (353)
T PF00930_consen 52 PDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPL 130 (353)
T ss_dssp SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEE
T ss_pred cCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEe
Confidence 9999988776 46899999877643321 112 0 1123568899999998876422 1
Q ss_pred ----------------------------eEEEEECCCCceeEE--e---ccCCCCeeEEEEcCCCCEEEEE--ECC---C
Q 005277 486 ----------------------------TARIWSMDRIQPLRI--M---AGHLSDVDCVRWHINCNYIATG--SSD---K 527 (704)
Q Consensus 486 ----------------------------~i~lwd~~~~~~~~~--~---~~~~~~V~~v~~~p~~~~l~tg--s~d---g 527 (704)
.+.++|+.+++.... . .....-+..+.|.+++..|+.. +.+ .
T Consensus 131 ~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~ 210 (353)
T PF00930_consen 131 PDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRL 210 (353)
T ss_dssp EEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEE
T ss_pred eccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEE
Confidence 133344444433211 1 1223346788999998844443 332 2
Q ss_pred cEEEEeCCCCcEEEEeec-CCCCE---EEEEEe-cCCC-EEEEEeCCCe--EEEEeCCCCeeeeeecCCCceeee
Q 005277 528 TVRLWDVSSGECVRIFIG-HRSMI---LSLAMS-PDGR-YMASGDEDGT--IMMWDLASGRCVTPLMGHTSCVWT 594 (704)
Q Consensus 528 ~I~iwd~~~~~~~~~~~~-h~~~i---~~l~~s-pdg~-~l~sg~~dg~--I~iwdl~~~~~~~~~~~h~~~V~s 594 (704)
.+.++|..++.+...... ..+.| ....|. +++. +|.....||. |.+++...+.. ..+....-.|..
T Consensus 211 ~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~lT~G~~~V~~ 284 (353)
T PF00930_consen 211 DLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-RQLTSGDWEVTS 284 (353)
T ss_dssp EEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-EESS-SSS-EEE
T ss_pred EEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccce-eccccCceeecc
Confidence 367778877765443332 22222 345554 5554 5555556664 55556555543 344434444543
No 325
>KOG1333 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=7.4e-06 Score=75.27 Aligned_cols=114 Identities=21% Similarity=0.313 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCCCCCCCCCCCCchhhhccccccccccCChhhHHHHHHHHHHHHhhcc-
Q 005277 4 LQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSL- 82 (704)
Q Consensus 4 ~~~~~~v~~yl~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l- 82 (704)
+-+++.|.+||--|||+.|.++|.+|++..+.++ +.-..|-+.+... .+-.|-+.....+..|.+-|.++|
T Consensus 6 ~~tDelvReYL~frgf~~tLkalD~E~~~~Ke~~-------frvdrivdq~~~a-~q~~Dl~aLr~~W~~l~~r~Fs~Le 77 (241)
T KOG1333|consen 6 ERTDELVREYLLFRGFTHTLKALDAEIKADKEKG-------FRVDRIVDQLQQA-MQVYDLAALRDYWSYLERRLFSRLE 77 (241)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhHHHhhhhhcC-------CcHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999998765432 2233333333311 234578888999999999999999
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhHH
Q 005277 83 DLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHE 125 (704)
Q Consensus 83 d~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~ 125 (704)
++|++...++=-.+|-+....-|++++++.|.+||+|-+.+..
T Consensus 78 ~~y~~~~~kle~Sl~r~yLV~~~q~nr~~K~~EFF~K~a~~lq 120 (241)
T KOG1333|consen 78 DIYRPTIHKLETSLFRFYLVYTIQTNRNDKAQEFFAKQATELQ 120 (241)
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHh
Confidence 7999999999999999999999999999999999999987743
No 326
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.24 E-value=0.00017 Score=79.66 Aligned_cols=196 Identities=11% Similarity=0.087 Sum_probs=112.9
Q ss_pred CCCEEEEEeC-CCeEEEEeCCCCceeEEeec-CCcCeeE-------------------EEEcCCCCEEEE-EeCCCeEEE
Q 005277 432 LGDFILSSSA-DTTIRLWSTKLNANLVCYKG-HNYPVWD-------------------VQFNPQGHYFAS-SSHDRTARI 489 (704)
Q Consensus 432 ~~~~l~s~s~-Dg~I~lwd~~~~~~~~~~~~-h~~~V~~-------------------v~~sp~~~~l~s-gs~dg~i~l 489 (704)
||+||+.-.. +..|-..+++..++-..+.- ....+.. +-++|+|+.+.. .-..+.+.+
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSv 219 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTA 219 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEE
Confidence 6778876653 55666667766655433321 1111222 223445554422 224466777
Q ss_pred EECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEE----------------------------------------CCCcE
Q 005277 490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS----------------------------------------SDKTV 529 (704)
Q Consensus 490 wd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs----------------------------------------~dg~I 529 (704)
.|.++.+....+.-. .....+.++|+|+++++.+ .++.|
T Consensus 220 ID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V 298 (635)
T PRK02888 220 VDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKV 298 (635)
T ss_pred EECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEE
Confidence 888876665554422 2445677788888887765 12457
Q ss_pred EEEeCCC----C-cEEEEeecCCCCEEEEEEecCCCEEEEEe-CCCeEEEEeCCCCeeee--eecCCCceeeeeeeeeee
Q 005277 530 RLWDVSS----G-ECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLASGRCVT--PLMGHTSCVWTLAYRFLL 601 (704)
Q Consensus 530 ~iwd~~~----~-~~~~~~~~h~~~i~~l~~spdg~~l~sg~-~dg~I~iwdl~~~~~~~--~~~~h~~~V~sl~~~~~~ 601 (704)
.+.|.++ + ..+..+ .-......+.++|||+++++++ .+++|.|.|+.+.+... .+.....-+-.+..
T Consensus 299 ~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev---- 373 (635)
T PRK02888 299 PVVDGRKAANAGSALTRYV-PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL---- 373 (635)
T ss_pred EEEECCccccCCcceEEEE-ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc----
Confidence 7777776 3 333333 3445678899999999887655 58999999998754311 01000000000000
Q ss_pred hccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCC
Q 005277 602 LVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTT 654 (704)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~ 654 (704)
...+-...+.++|+...|-..|..|..|++..
T Consensus 374 ---------------------GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 374 ---------------------GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ---------------------CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 00011111277888888889999999999987
No 327
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.18 E-value=6e-07 Score=96.06 Aligned_cols=198 Identities=14% Similarity=0.251 Sum_probs=131.9
Q ss_pred CCEEEEEEcCC--CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEE
Q 005277 352 NGLNCASISQD--GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (704)
Q Consensus 352 ~~V~~~~fs~d--g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 429 (704)
..+.|++++-+ ..++++|..+|.|.+-.+..... .......+|..++++++|
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd--------------------------Ss~E~tp~~ar~Ct~lAw 110 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHD--------------------------SSAEVTPGYARPCTSLAW 110 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCccc--------------------------ccceeccccccccccccc
Confidence 45677776654 45899999999999988764110 112334568889999999
Q ss_pred cCC-CCEEEEE----eCCCeEEEEeCCCCc--e--eEEeec-CCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeE
Q 005277 430 SPL-GDFILSS----SADTTIRLWSTKLNA--N--LVCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR 499 (704)
Q Consensus 430 sp~-~~~l~s~----s~Dg~I~lwd~~~~~--~--~~~~~~-h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~ 499 (704)
++- .+.|+.| -.|..+.|||+.+.- + ...+.+ ......+++|..+.+.+.+|...+.+.++|++... .+
T Consensus 111 neLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~-~~ 189 (783)
T KOG1008|consen 111 NELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL-DS 189 (783)
T ss_pred ccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhh-hh
Confidence 984 4456655 346789999998761 1 122222 33445688999889999999999999999997421 11
Q ss_pred EeccCCCCeeEEEEcC-CCCEEEEEECCCcEEEEe-CCCC-cEEEEeecCC----CCEEEEEEecC--CCEEEEEeCCCe
Q 005277 500 IMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWD-VSSG-ECVRIFIGHR----SMILSLAMSPD--GRYMASGDEDGT 570 (704)
Q Consensus 500 ~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~I~iwd-~~~~-~~~~~~~~h~----~~i~~l~~spd--g~~l~sg~~dg~ 570 (704)
...-.+..+..+...| .++|+++-. ||.|.+|| .++- +++....... ..+..++|+|. |...+..-..++
T Consensus 190 ~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~t 268 (783)
T KOG1008|consen 190 VSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSIT 268 (783)
T ss_pred hhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcce
Confidence 1122334566777888 788888776 99999999 4332 2222222222 24899999994 433334446688
Q ss_pred EEEEeCC
Q 005277 571 IMMWDLA 577 (704)
Q Consensus 571 I~iwdl~ 577 (704)
|+++|+.
T Consensus 269 Irlydi~ 275 (783)
T KOG1008|consen 269 IRLYDIC 275 (783)
T ss_pred EEEeccc
Confidence 9999985
No 328
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.16 E-value=0.00066 Score=75.13 Aligned_cols=149 Identities=13% Similarity=0.018 Sum_probs=99.3
Q ss_pred EEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEe-----------------------
Q 005277 427 ASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS----------------------- 482 (704)
Q Consensus 427 l~~sp~~~~l~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs----------------------- 482 (704)
+=++|||+.+. +.-..+.+.+.|..+.+...++.--. ....++++|+|.++++.+
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvf 276 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVF 276 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEE
Confidence 34566776554 33345667777877766655554322 335567777777766654
Q ss_pred -----------------CCCeEEEEECCC----C-ceeEEeccCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCcE
Q 005277 483 -----------------HDRTARIWSMDR----I-QPLRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGEC 539 (704)
Q Consensus 483 -----------------~dg~i~lwd~~~----~-~~~~~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~ 539 (704)
.++.|.+.|..+ + ..+..+. -......+.++|||+++++++ .+.+|.+.|+.+.+.
T Consensus 277 ni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~ 355 (635)
T PRK02888 277 NIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDD 355 (635)
T ss_pred chHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhh
Confidence 234577777766 2 3333332 345567899999999988765 589999999987552
Q ss_pred ------------EEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 005277 540 ------------VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578 (704)
Q Consensus 540 ------------~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~ 578 (704)
+....-. -.....+|.++|+...+-.-|..|..||+..
T Consensus 356 ~~~~~~~~~~~vvaevevG-lGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 356 LFDGKIKPRDAVVAEPELG-LGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhhccCCccceEEEeeccC-CCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 3333322 2345678999999888899999999999876
No 329
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.15 E-value=0.00066 Score=72.94 Aligned_cols=234 Identities=12% Similarity=0.098 Sum_probs=129.7
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCC----------CCCCcccccC---CC--CCccceeec
Q 005277 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGEN----------DTTPREDIIG---PN--GRKRSYTLY 417 (704)
Q Consensus 353 ~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~----------~~~~~~~~~~---~~--~~~~~~~~~ 417 (704)
.|+++.|+++..-||+|...|.|.||.+................ ......++.. +. ........+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58899999998899999999999999987643221000000000 0000001111 11 113344556
Q ss_pred cCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEe--ec------CCcCeeEEEEcC-----CC---CEEEEE
Q 005277 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY--KG------HNYPVWDVQFNP-----QG---HYFASS 481 (704)
Q Consensus 418 ~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~--~~------h~~~V~~v~~sp-----~~---~~l~sg 481 (704)
....++|++++.| |=-+++.|..+|++.|.|++....+..- .. ....|+++.|+- |+ -.+++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 6668999999998 5568999999999999999876665442 11 234678888863 33 468899
Q ss_pred eCCCeEEEEECCC---Cce----eEEeccCCCCeeEEE-EcCC--------------------CCEEEEEECCCcEEEEe
Q 005277 482 SHDRTARIWSMDR---IQP----LRIMAGHLSDVDCVR-WHIN--------------------CNYIATGSSDKTVRLWD 533 (704)
Q Consensus 482 s~dg~i~lwd~~~---~~~----~~~~~~~~~~V~~v~-~~p~--------------------~~~l~tgs~dg~I~iwd 533 (704)
+..|.+.+|.+.- +.. ......+.+.|..+. ++.+ -+-+++...+..|+++.
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~ 241 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK 241 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence 9999999998741 111 111223455555544 3211 02244445577899999
Q ss_pred CCCCcEEEEeecCCCCEEEEEEe-----cCCCEEEEEeCCCeEEEEeCCCCeeeeeecC
Q 005277 534 VSSGECVRIFIGHRSMILSLAMS-----PDGRYMASGDEDGTIMMWDLASGRCVTPLMG 587 (704)
Q Consensus 534 ~~~~~~~~~~~~h~~~i~~l~~s-----pdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~ 587 (704)
..+.+.........-....+++- ..+..|++-..+|.|+++.+..-+.+..+.-
T Consensus 242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l 300 (395)
T PF08596_consen 242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSL 300 (395)
T ss_dssp TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-
T ss_pred CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccC
Confidence 98887766554332333444553 3577889999999999999999888776654
No 330
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.15 E-value=0.00014 Score=83.93 Aligned_cols=197 Identities=18% Similarity=0.216 Sum_probs=135.8
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECC----C---
Q 005277 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD----R--- 494 (704)
Q Consensus 422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~----~--- 494 (704)
+.|.++.|..+..-++.+..+|.|.+-|..+.... ....-...|.+++|+||+..++..+.++++.+-+-+ .
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~ 147 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP 147 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence 68999999999999999999999999988765432 223346689999999999999999988888775431 0
Q ss_pred ----------------CceeEEeccCC---------------------CCeeEEEEcCCCCEEEEEE----CC-CcEEEE
Q 005277 495 ----------------IQPLRIMAGHL---------------------SDVDCVRWHINCNYIATGS----SD-KTVRLW 532 (704)
Q Consensus 495 ----------------~~~~~~~~~~~---------------------~~V~~v~~~p~~~~l~tgs----~d-g~I~iw 532 (704)
++....|.|.. +.=..|+|.-||.++|+.. .+ +.|++|
T Consensus 148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~ 227 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY 227 (1265)
T ss_pred cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence 01111122111 1123589999999999832 23 789999
Q ss_pred eCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEe---CCCeEEEEeCCCCee----eeeecCCCceeeeeeeeeeehccc
Q 005277 533 DVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD---EDGTIMMWDLASGRC----VTPLMGHTSCVWTLAYRFLLLVTN 605 (704)
Q Consensus 533 d~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~---~dg~I~iwdl~~~~~----~~~~~~h~~~V~sl~~~~~~~~~~ 605 (704)
|-. |..-.+-....+--.+++|-|.|..+++-. .|+.|.++.- +|-. ...+......|..+.|
T Consensus 228 drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~W-------- 297 (1265)
T KOG1920|consen 228 DRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEELAW-------- 297 (1265)
T ss_pred ccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchheeee--------
Confidence 976 544333333334456899999999998753 5567999983 4422 2223333445889999
Q ss_pred cccccccccccceeeeeeeEEeecccCCCCCEEEE---EeCCCcEEEEeCCCC
Q 005277 606 AYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLAS---GSADCTVKLWDVTTS 655 (704)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~las---gs~Dg~V~iWd~~~~ 655 (704)
+.++.+||+ ......|++|-+.+-
T Consensus 298 --------------------------ns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 298 --------------------------NSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred --------------------------cCCCCceeeeecccccceEEEEEecCe
Confidence 888888887 444455999988764
No 331
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.14 E-value=0.00061 Score=74.20 Aligned_cols=178 Identities=12% Similarity=0.042 Sum_probs=114.8
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeEEeecCCc-------CeeEEEEcC--CCCEEEEEeCCCeEEEEECCCCceeEEeccC
Q 005277 434 DFILSSSADTTIRLWSTKLNANLVCYKGHNY-------PVWDVQFNP--QGHYFASSSHDRTARIWSMDRIQPLRIMAGH 504 (704)
Q Consensus 434 ~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~-------~V~~v~~sp--~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~ 504 (704)
..++.++.+|.+..+|..+++.+..+..... ....+.-+| .+..++.++.+|.+..+|..+++.+....-
T Consensus 206 ~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~- 284 (394)
T PRK11138 206 GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY- 284 (394)
T ss_pred CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC-
Confidence 3466777889999999988877665431110 011122223 355677778899999999999887655431
Q ss_pred CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCC-CEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeee
Q 005277 505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS-MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583 (704)
Q Consensus 505 ~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~-~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~ 583 (704)
.....+. ..+..++.++.+|.+..+|..+|+.+.....-.. ...+..+ .+..|+.++.+|.|.+.|..+|+.+.
T Consensus 285 -~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~ 359 (394)
T PRK11138 285 -GSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVA 359 (394)
T ss_pred -CCccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 1111122 2466788888999999999999987764432111 1222222 25678889999999999999998877
Q ss_pred eecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeC
Q 005277 584 PLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDV 652 (704)
Q Consensus 584 ~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~ 652 (704)
........+.+-- -..+..|+.++.||.|+.++.
T Consensus 360 ~~~~~~~~~~s~P-----------------------------------~~~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 360 QQKVDSSGFLSEP-----------------------------------VVADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EEEcCCCcceeCC-----------------------------------EEECCEEEEEeCCceEEEEeC
Confidence 6654322222210 112457888899999988764
No 332
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.03 E-value=0.00019 Score=79.31 Aligned_cols=70 Identities=14% Similarity=0.276 Sum_probs=61.1
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCC
Q 005277 354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG 433 (704)
Q Consensus 354 V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~ 433 (704)
+++++|+|..-.||.|-.-|.+.+|.... .........|+.+|..+.||++|
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~----------------------------~e~htv~~th~a~i~~l~wS~~G 113 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNT----------------------------TETHTVVETHPAPIQGLDWSHDG 113 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCC----------------------------ceeeeeccCCCCCceeEEecCCC
Confidence 67899999999999999999999998765 22334455799999999999999
Q ss_pred CEEEEEeCCCeEEEEeCC
Q 005277 434 DFILSSSADTTIRLWSTK 451 (704)
Q Consensus 434 ~~l~s~s~Dg~I~lwd~~ 451 (704)
..++++..-|.|.+|..+
T Consensus 114 ~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 114 TVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred CeEEEcCCCceeEEEEee
Confidence 999999999999999876
No 333
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.00 E-value=0.0008 Score=73.29 Aligned_cols=220 Identities=15% Similarity=0.112 Sum_probs=108.7
Q ss_pred CccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeE
Q 005277 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR 499 (704)
Q Consensus 420 h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~ 499 (704)
..-....++++|+|++++.+ .||...|+......... .+......|.+.+ .+|+-...++|.++.--......
T Consensus 31 ~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k 103 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-----FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVK 103 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-----EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT-
T ss_pred CCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc-----cCceeEEEEecCc-cEEEEECCCeEEEEEcCccccce
Confidence 33457899999999998885 46788888854443322 2344578899854 47777778999996322222222
Q ss_pred EeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCC
Q 005277 500 IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579 (704)
Q Consensus 500 ~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~ 579 (704)
.+... ..+..+-. |..|+..+.+ .|.+||+.+++.++.+... +|..+.|+++|.+++..+.+ .+.|++....
T Consensus 104 ~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~ 175 (443)
T PF04053_consen 104 SIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLE 175 (443)
T ss_dssp ----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HH
T ss_pred EEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecch
Confidence 33221 23444432 7777777654 8999999999999988643 48999999999999998866 5777765432
Q ss_pred -----------eeeeeecCCCceeeeeeee--eeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCc
Q 005277 580 -----------RCVTPLMGHTSCVWTLAYR--FLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCT 646 (704)
Q Consensus 580 -----------~~~~~~~~h~~~V~sl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~ 646 (704)
..+..+..-...|.+..|. .+...+...++.......+.+.+...........+..+.+.....|+.
T Consensus 176 ~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT~~~lkYl~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~ 255 (443)
T PF04053_consen 176 AVAAIPEEGVEDAFELIHEISERIKSGCWVEDCFIYTTSNHLKYLVNGETGIIAHLDKPLYLLGYLPKENRLYLIDRDGN 255 (443)
T ss_dssp HHHHBTTTB-GGGEEEEEEE-S--SEEEEETTEEEEE-TTEEEEEETTEEEEEEE-SS--EEEEEETTTTEEEEE-TT--
T ss_pred hcccccccCchhceEEEEEecceeEEEEEEcCEEEEEcCCeEEEEEcCCcceEEEcCCceEEEEEEccCCEEEEEECCCC
Confidence 0222222223456666662 111222222222222222222222223333333444556666666666
Q ss_pred EEEEeCCC
Q 005277 647 VKLWDVTT 654 (704)
Q Consensus 647 V~iWd~~~ 654 (704)
|..+.+..
T Consensus 256 v~~~~ld~ 263 (443)
T PF04053_consen 256 VISYELDL 263 (443)
T ss_dssp EEEEE--H
T ss_pred EEEEEECH
Confidence 66666543
No 334
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.00 E-value=0.00029 Score=76.05 Aligned_cols=150 Identities=20% Similarity=0.243 Sum_probs=94.9
Q ss_pred CeeEEEEcC-CCCEEEEE----ECCCc----EEEEeCCCCcEEEE---eecCCCCEEEEEEecCCCEEEEEeCCCeEEEE
Q 005277 507 DVDCVRWHI-NCNYIATG----SSDKT----VRLWDVSSGECVRI---FIGHRSMILSLAMSPDGRYMASGDEDGTIMMW 574 (704)
Q Consensus 507 ~V~~v~~~p-~~~~l~tg----s~dg~----I~iwd~~~~~~~~~---~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iw 574 (704)
...++.|+- +++.+.+. +.+|. -++|++..++..+. -......|.|++++|+...|+.|+.||.|.+|
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLy 286 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILY 286 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEE
Confidence 335566664 33444432 23333 34566655433221 12567889999999999999999999999999
Q ss_pred eCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCC
Q 005277 575 DLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTT 654 (704)
Q Consensus 575 dl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~ 654 (704)
|...+.. ......-..+.++| +|+|.++++|+..|.+.+||+.-
T Consensus 287 D~~~~~t--~~~ka~~~P~~iaW----------------------------------Hp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 287 DTTRGVT--LLAKAEFIPTLIAW----------------------------------HPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EcCCCee--eeeeecccceEEEE----------------------------------cCCCcEEEEEcCCceEEEEEeec
Confidence 9876632 22233445677888 99999999999999999999976
Q ss_pred Cccccccc-cccCccccccccccCCCCcCeEEEEEccCC
Q 005277 655 STKVLKTE-EKSGTNRLRSLKTLPTKSTPVYSLQFSRRN 692 (704)
Q Consensus 655 ~~~~~~~~-~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g 692 (704)
.......- +.......-.+..+-.+...+..+.|++..
T Consensus 331 spi~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~~ 369 (545)
T PF11768_consen 331 SPIKMQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPAP 369 (545)
T ss_pred CccceeeccccCCCccEEeeehhccCcchhheeEeccCC
Confidence 54332221 111111112233444555667777787443
No 335
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.97 E-value=0.0024 Score=61.94 Aligned_cols=70 Identities=19% Similarity=0.043 Sum_probs=47.7
Q ss_pred CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE-EEEEcCCCCEEEEEe
Q 005277 362 DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY-SASFSPLGDFILSSS 440 (704)
Q Consensus 362 dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~l~~sp~~~~l~s~s 440 (704)
-|++++.|+..|.+.+.+++++.. +..+..- +.|. .....+++..+..|+
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~----------------------------~w~f~~~-~~vk~~a~~d~~~glIycgs 112 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQ----------------------------IWNFVIL-ETVKVRAQCDFDGGLIYCGS 112 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhh----------------------------eeeeeeh-hhhccceEEcCCCceEEEec
Confidence 367899999999999888876321 1111110 1111 223456788999999
Q ss_pred CCCeEEEEeCCCCceeEEee
Q 005277 441 ADTTIRLWSTKLNANLVCYK 460 (704)
Q Consensus 441 ~Dg~I~lwd~~~~~~~~~~~ 460 (704)
.|++.+..|..+..++...+
T Consensus 113 hd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 113 HDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred CCCcEEEecccccceEEecc
Confidence 99999999999888776654
No 336
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.96 E-value=5e-06 Score=89.20 Aligned_cols=174 Identities=18% Similarity=0.339 Sum_probs=117.8
Q ss_pred cCeEEEEEcCCCC--EEEEEeCCCeEEEEeCCCCce--eEEeecCCcCeeEEEEcC-CCCEEEEEe----CCCeEEEEEC
Q 005277 422 GPVYSASFSPLGD--FILSSSADTTIRLWSTKLNAN--LVCYKGHNYPVWDVQFNP-QGHYFASSS----HDRTARIWSM 492 (704)
Q Consensus 422 ~~V~~l~~sp~~~--~l~s~s~Dg~I~lwd~~~~~~--~~~~~~h~~~V~~v~~sp-~~~~l~sgs----~dg~i~lwd~ 492 (704)
..+.|+++.-+.+ .++.|..+|.|.+-.++...- .....+|..++++++|++ |.+.+|.|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 3466777665443 677899999999988764322 334567888999999999 566677663 4677999999
Q ss_pred CCC--cee--EEec-cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEec-CCCEEEEEe
Q 005277 493 DRI--QPL--RIMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP-DGRYMASGD 566 (704)
Q Consensus 493 ~~~--~~~--~~~~-~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~sp-dg~~l~sg~ 566 (704)
.+. .|. ..|. +......+++|-.+.+.+.+|...+.+.++|++...... ..-.+..+..+.++| .+.++++..
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~-~svnTk~vqG~tVdp~~~nY~cs~~ 215 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSV-SSVNTKYVQGITVDPFSPNYFCSNS 215 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhh-hhhhhhhcccceecCCCCCceeccc
Confidence 875 222 1222 244566789999899999999999999999998332111 111234566788888 777877665
Q ss_pred CCCeEEEEe-CCCC-eeeeeecCCC----ceeeeeee
Q 005277 567 EDGTIMMWD-LASG-RCVTPLMGHT----SCVWTLAY 597 (704)
Q Consensus 567 ~dg~I~iwd-l~~~-~~~~~~~~h~----~~V~sl~~ 597 (704)
||.|.+|| .++- .++..+.... ..+..++|
T Consensus 216 -dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~ay 251 (783)
T KOG1008|consen 216 -DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAY 251 (783)
T ss_pred -cCceeeccchhhhccHHHHHhhCCCCcccceeeEEe
Confidence 99999999 3332 2333332222 24777888
No 337
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=0.00013 Score=74.60 Aligned_cols=92 Identities=12% Similarity=0.198 Sum_probs=78.1
Q ss_pred EEEEeCCCCceeEEeecCCcCeeEEEEcCCCC-EEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCC-CCEEEE
Q 005277 445 IRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHIN-CNYIAT 522 (704)
Q Consensus 445 I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~-~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~-~~~l~t 522 (704)
|++.+..+.+....+.+|...|.+++|+|..+ ++..++.+..|.|.|+++...+..+..+ ..+++++|.-+ .++|..
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 66666666666666778889999999999776 7888999999999999999888888877 88999999865 577888
Q ss_pred EECCCcEEEEeCCCC
Q 005277 523 GSSDKTVRLWDVSSG 537 (704)
Q Consensus 523 gs~dg~I~iwd~~~~ 537 (704)
|...|.|.+||++..
T Consensus 254 Gl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQP 268 (463)
T ss_pred eccCceEEEEEccCC
Confidence 899999999999854
No 338
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.90 E-value=0.00079 Score=73.74 Aligned_cols=141 Identities=13% Similarity=0.051 Sum_probs=90.1
Q ss_pred CeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCC
Q 005277 330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG 409 (704)
Q Consensus 330 ~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (704)
..+++.+........++..+..+.+..+..|++..++|+|+..|.|.|+-+.......
T Consensus 55 G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~---------------------- 112 (726)
T KOG3621|consen 55 GSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD---------------------- 112 (726)
T ss_pred ceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc----------------------
Confidence 3455555544444444444455567778889999999999999999999887521110
Q ss_pred CccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----ceeEEeecCCcCeeEEEEcCCCCEEEEEeCCC
Q 005277 410 RKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN----ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR 485 (704)
Q Consensus 410 ~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~----~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg 485 (704)
.......-..|...|++++|++++..+++|...|.|.+-.+++. ...+.+....++|-.+... ++..+++...
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVStl~-- 189 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVSTLT-- 189 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhhhh--
Confidence 00011111238899999999999999999999999999988872 1123333445677677665 3333333322
Q ss_pred eEEEEECCCC
Q 005277 486 TARIWSMDRI 495 (704)
Q Consensus 486 ~i~lwd~~~~ 495 (704)
...+++++..
T Consensus 190 r~~Lc~tE~e 199 (726)
T KOG3621|consen 190 RCILCQTEAE 199 (726)
T ss_pred hhheeecchh
Confidence 3455666543
No 339
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.87 E-value=0.017 Score=64.64 Aligned_cols=152 Identities=10% Similarity=0.164 Sum_probs=98.2
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeEEeecCCcC--eeEEEEcC--CCCEEEEEe---------CCCeEEEEECCCCceeEE
Q 005277 434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYP--VWDVQFNP--QGHYFASSS---------HDRTARIWSMDRIQPLRI 500 (704)
Q Consensus 434 ~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~--V~~v~~sp--~~~~l~sgs---------~dg~i~lwd~~~~~~~~~ 500 (704)
..++.++.+|.|..+|..+++.+..+...... -..+.-+| .+..++.++ .+|.+..+|..+++.+..
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence 57788888999999999999998877643221 01112222 224454553 368899999999988776
Q ss_pred eccCCCC--------------------e-eEEEEcCCCCEEEEEECCC------------------cEEEEeCCCCcEEE
Q 005277 501 MAGHLSD--------------------V-DCVRWHINCNYIATGSSDK------------------TVRLWDVSSGECVR 541 (704)
Q Consensus 501 ~~~~~~~--------------------V-~~v~~~p~~~~l~tgs~dg------------------~I~iwd~~~~~~~~ 541 (704)
+...... + ...++.+.+..+++++.++ .|.-+|..+|+.+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W 270 (488)
T cd00216 191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKW 270 (488)
T ss_pred eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEE
Confidence 6532110 1 1234445567788887665 69999999999988
Q ss_pred EeecCCCCE------EEEEEe----cCCC---EEEEEeCCCeEEEEeCCCCeeeeee
Q 005277 542 IFIGHRSMI------LSLAMS----PDGR---YMASGDEDGTIMMWDLASGRCVTPL 585 (704)
Q Consensus 542 ~~~~h~~~i------~~l~~s----pdg~---~l~sg~~dg~I~iwdl~~~~~~~~~ 585 (704)
.+..-.... ....+. -+|. .+++++.+|.+...|..+|+.+-..
T Consensus 271 ~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~ 327 (488)
T cd00216 271 FYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISAR 327 (488)
T ss_pred EeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEe
Confidence 764211110 111111 1343 6788889999999999999887654
No 340
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.86 E-value=0.026 Score=61.90 Aligned_cols=214 Identities=16% Similarity=0.149 Sum_probs=114.8
Q ss_pred EEEEEEcCCCCEEEEEeC-CC----cEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEE
Q 005277 354 LNCASISQDGSLVAGGFS-DS----SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS 428 (704)
Q Consensus 354 V~~~~fs~dg~~lasg~~-dg----~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 428 (704)
+....+||||+++|.+-+ .| .|+++|+.++... ...+.. .....+.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l---------------------------~d~i~~--~~~~~~~ 176 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFL---------------------------PDGIEN--PKFSSVS 176 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEE---------------------------EEEEEE--EESEEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCc---------------------------CCcccc--cccceEE
Confidence 346789999999997743 34 4999998763110 011111 1112399
Q ss_pred EcCCCCEEEEEeCC-----------CeEEEEeCCCCcee--EEeecCCcC--eeEEEEcCCCCEEEEEeC---C-CeEEE
Q 005277 429 FSPLGDFILSSSAD-----------TTIRLWSTKLNANL--VCYKGHNYP--VWDVQFNPQGHYFASSSH---D-RTARI 489 (704)
Q Consensus 429 ~sp~~~~l~s~s~D-----------g~I~lwd~~~~~~~--~~~~~h~~~--V~~v~~sp~~~~l~sgs~---d-g~i~l 489 (704)
|.++++.|+....+ ..|+.|.+.+...- ..+...... ...+..++++++++..+. + ..+.+
T Consensus 177 W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~ 256 (414)
T PF02897_consen 177 WSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYL 256 (414)
T ss_dssp ECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEE
T ss_pred EeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEE
Confidence 99998877655433 23788888876543 555554433 567889999999776542 2 35777
Q ss_pred EECCCC----ceeEEeccCCCCeeEEEEcCCCCEEEEEE---CCCcEEEEeCCCCcE---EEEeecCCCCEEEEEEecCC
Q 005277 490 WSMDRI----QPLRIMAGHLSDVDCVRWHINCNYIATGS---SDKTVRLWDVSSGEC---VRIFIGHRSMILSLAMSPDG 559 (704)
Q Consensus 490 wd~~~~----~~~~~~~~~~~~V~~v~~~p~~~~l~tgs---~dg~I~iwd~~~~~~---~~~~~~h~~~i~~l~~spdg 559 (704)
.++... .....+......+....-+.++.+++... ..+.|...++.+... ...+..+...+.-..+...+
T Consensus 257 ~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~ 336 (414)
T PF02897_consen 257 LDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFK 336 (414)
T ss_dssp EECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEET
T ss_pred EeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEEC
Confidence 788764 23344444444444433333444444332 346677778876542 33555666543333334445
Q ss_pred CEEEE-EeCCC--eEEEEeCCCCeeeeeec-CCCceeeeee
Q 005277 560 RYMAS-GDEDG--TIMMWDLASGRCVTPLM-GHTSCVWTLA 596 (704)
Q Consensus 560 ~~l~s-g~~dg--~I~iwdl~~~~~~~~~~-~h~~~V~sl~ 596 (704)
.+|+. .-.++ .|+++|+..+.....+. .-.+.|..+.
T Consensus 337 ~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~ 377 (414)
T PF02897_consen 337 DYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVS 377 (414)
T ss_dssp TEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEE
T ss_pred CEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccC
Confidence 55554 33443 68889988344433332 2234444443
No 341
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.82 E-value=0.0089 Score=59.84 Aligned_cols=198 Identities=12% Similarity=0.169 Sum_probs=110.9
Q ss_pred EeeCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277 347 FINTHNGLNCASISQDG-SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (704)
Q Consensus 347 ~~~~~~~V~~~~fs~dg-~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (704)
+.+-...+..++|+|+. +++|+....+.|...+.++ . ......+.+ .+..-
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G--~-------------------------vlr~i~l~g-~~D~E 68 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDG--K-------------------------VLRRIPLDG-FGDYE 68 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT-----------------------------EEEEEE-SS--SSEE
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCC--C-------------------------EEEEEeCCC-CCCce
Confidence 33445669999999984 5666666677776666542 0 001112333 35678
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCce------eEEee-----cCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 005277 426 SASFSPLGDFILSSSADTTIRLWSTKLNAN------LVCYK-----GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR 494 (704)
Q Consensus 426 ~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~------~~~~~-----~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~ 494 (704)
+|++..++.++++.-.++.+.++++..... ...+. .++..+-.++|.|.++.|+.+-...-..+|.++.
T Consensus 69 gI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~ 148 (248)
T PF06977_consen 69 GITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNG 148 (248)
T ss_dssp EEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEES
T ss_pred eEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcc
Confidence 899988888777776789999998843221 11221 2456689999999877777777766666776653
Q ss_pred ---CceeEEe--------ccCCCCeeEEEEcCCC-CEEEEEECCCcEEEEeCCCCcEEEEeecCC---------CCEEEE
Q 005277 495 ---IQPLRIM--------AGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECVRIFIGHR---------SMILSL 553 (704)
Q Consensus 495 ---~~~~~~~--------~~~~~~V~~v~~~p~~-~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~---------~~i~~l 553 (704)
...+... ......+.+++++|.. .+++.......|..+| .+|+.+..+.-.. ...-.|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGI 227 (248)
T PF06977_consen 149 FPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGI 227 (248)
T ss_dssp TT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEE
T ss_pred ccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEE
Confidence 2121111 1244568899999965 5555666778899999 6788776654322 257889
Q ss_pred EEecCCCEEEEEeCCCeEEEE
Q 005277 554 AMSPDGRYMASGDEDGTIMMW 574 (704)
Q Consensus 554 ~~spdg~~l~sg~~dg~I~iw 574 (704)
+|.++|++.++ ++-+..+++
T Consensus 228 a~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 228 AFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp EE-TT--EEEE-ETTTEEEEE
T ss_pred EECCCCCEEEE-cCCceEEEe
Confidence 99999965544 455555443
No 342
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.82 E-value=0.0065 Score=66.17 Aligned_cols=168 Identities=13% Similarity=0.100 Sum_probs=90.5
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-------eEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 005277 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN-------LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR 494 (704)
Q Consensus 422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~-------~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~ 494 (704)
+.|.++.|+.+. .|++-..||+++++|+. |.. +....-....+....+..+| ++.-..++.+.+..--.
T Consensus 81 ~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~ 156 (410)
T PF04841_consen 81 GRIVGMGWTDDE-ELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNID 156 (410)
T ss_pred CCEEEEEECCCC-eEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCcc
Confidence 789999999754 56677789999999987 333 11111112223333343355 33333445444442211
Q ss_pred Cc-eeEEeccCCCCee---------E-EEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEE
Q 005277 495 IQ-PLRIMAGHLSDVD---------C-VRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMA 563 (704)
Q Consensus 495 ~~-~~~~~~~~~~~V~---------~-v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~ 563 (704)
.. ..+.+..-..... . ..++.+....+....++.+.+.+-...+. + ...+++..|++||+|++||
T Consensus 157 ~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i-~~~~~i~~iavSpng~~iA 232 (410)
T PF04841_consen 157 EPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I-DSDGPIIKIAVSPNGKFIA 232 (410)
T ss_pred ccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c-cCCCCeEEEEECCCCCEEE
Confidence 11 1111110000000 0 12333444444444445555333222111 1 2346899999999999999
Q ss_pred EEeCCCeEEEEeCCCCeeeeeecCC-Cceeeeeee
Q 005277 564 SGDEDGTIMMWDLASGRCVTPLMGH-TSCVWTLAY 597 (704)
Q Consensus 564 sg~~dg~I~iwdl~~~~~~~~~~~h-~~~V~sl~~ 597 (704)
.-..+|.+.+.+..-.+.+..+... ......+.|
T Consensus 233 l~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~W 267 (410)
T PF04841_consen 233 LFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAW 267 (410)
T ss_pred EEECCCCEEEEECcccceeEEeecCcCCCCcEEEE
Confidence 9999999999987666666555433 345556667
No 343
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.81 E-value=0.0018 Score=71.15 Aligned_cols=110 Identities=14% Similarity=0.161 Sum_probs=83.0
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEE
Q 005277 358 SISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFIL 437 (704)
Q Consensus 358 ~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~ 437 (704)
+++-.+++++.|++-|.+.+|+-..... ......+-.+.+..+..+++..+++
T Consensus 40 c~dst~~~l~~GsS~G~lyl~~R~~~~~---------------------------~~~~~~~~~~~~~~~~vs~~e~lvA 92 (726)
T KOG3621|consen 40 CVDATEEYLAMGSSAGSVYLYNRHTGEM---------------------------RKLKNEGATGITCVRSVSSVEYLVA 92 (726)
T ss_pred EeecCCceEEEecccceEEEEecCchhh---------------------------hcccccCccceEEEEEecchhHhhh
Confidence 4455788999999999999998654211 1111222445677778888888888
Q ss_pred EEeCCCeEEEEeCCCCcee---EE---eecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 005277 438 SSSADTTIRLWSTKLNANL---VC---YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR 494 (704)
Q Consensus 438 s~s~Dg~I~lwd~~~~~~~---~~---~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~ 494 (704)
.|+..|.|.++-+...... .. -+.|...|++++|++++..+++|...|.|.+-.++.
T Consensus 93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 9999999999988764321 11 124788999999999999999999999999988877
No 344
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.81 E-value=0.0049 Score=66.98 Aligned_cols=175 Identities=16% Similarity=0.162 Sum_probs=106.9
Q ss_pred eEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEe---CC-CeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCE
Q 005277 444 TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS---HD-RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNY 519 (704)
Q Consensus 444 ~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs---~d-g~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~ 519 (704)
.+.+-|.+ +.....+..-...+..-.|+|++..++..+ .. ..+.+++++++....... ..+.-..-+|+|+|+.
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~ 251 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSK 251 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCE
Confidence 34444444 445555555556777788999887755442 22 469999999887665554 2333445689999988
Q ss_pred EEEEE-CCCc--EEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCC-C--eEEEEeCCCCeeeeeecCCCceee
Q 005277 520 IATGS-SDKT--VRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED-G--TIMMWDLASGRCVTPLMGHTSCVW 593 (704)
Q Consensus 520 l~tgs-~dg~--I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~d-g--~I~iwdl~~~~~~~~~~~h~~~V~ 593 (704)
|+... .||. |+++|+.++...+ +....+.-+.=.|+|||++++-.+.. | .|.++|+..+.. ..+....+.-.
T Consensus 252 l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~ 329 (425)
T COG0823 252 LAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNS 329 (425)
T ss_pred EEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCc
Confidence 87654 4555 6667887776444 44333334467899999998876543 3 466667665544 22222222111
Q ss_pred eeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCC-Cc--EEEEeCCCCc
Q 005277 594 TLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSAD-CT--VKLWDVTTST 656 (704)
Q Consensus 594 sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~D-g~--V~iWd~~~~~ 656 (704)
.-.| +|+|++++..+.. |. |.+.|+.++.
T Consensus 330 ~p~~----------------------------------SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 330 NPVW----------------------------------SPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred CccC----------------------------------CCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 4444 9999998777643 44 5555555544
No 345
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=97.80 E-value=3.1e-05 Score=48.25 Aligned_cols=27 Identities=22% Similarity=0.477 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHH
Q 005277 4 LQVVEFVATYLKKKGFSEAENALQAEI 30 (704)
Q Consensus 4 ~~~~~~v~~yl~~~~~~~~~~~~~~e~ 30 (704)
++||++|.+||.++||..|..+|++|+
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 589999999999999999999999985
No 346
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.78 E-value=0.0075 Score=60.36 Aligned_cols=168 Identities=16% Similarity=0.180 Sum_probs=102.8
Q ss_pred eccCCccCeEEEEEcCCCCE-EEEEeCCCeEEEEeCCCCceeEEeecC-CcCeeEEEEcCCCCEEEEEeCCCeEEEEECC
Q 005277 416 LYQGHSGPVYSASFSPLGDF-ILSSSADTTIRLWSTKLNANLVCYKGH-NYPVWDVQFNPQGHYFASSSHDRTARIWSMD 493 (704)
Q Consensus 416 ~~~~h~~~V~~l~~sp~~~~-l~s~s~Dg~I~lwd~~~~~~~~~~~~h-~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~ 493 (704)
.+.+-...+.+++|.|+... +++....+.|...+.. ++.+..+.-. .+..-+|++..++.++++.-.++.+.+++++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 34455567999999998664 5566777888888875 7777776543 3567789998888777776678999999884
Q ss_pred CCc------eeEEec-----cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC---CcEEEEe--------ecCCCCEE
Q 005277 494 RIQ------PLRIMA-----GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS---GECVRIF--------IGHRSMIL 551 (704)
Q Consensus 494 ~~~------~~~~~~-----~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~---~~~~~~~--------~~h~~~i~ 551 (704)
... ....+. .+...+..++|.|.++.|+++-......+|.+.. ...+... ......+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 321 111221 2445689999999988888887777777776653 2222111 11334688
Q ss_pred EEEEecC-CCEEEEEeCCCeEEEEeCCCCeeeeee
Q 005277 552 SLAMSPD-GRYMASGDEDGTIMMWDLASGRCVTPL 585 (704)
Q Consensus 552 ~l~~spd-g~~l~sg~~dg~I~iwdl~~~~~~~~~ 585 (704)
+++++|. |.+++....+..|.++| .+|+.+..+
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~ 208 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSL 208 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEE
Confidence 9999995 66777788889999999 677776655
No 347
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.74 E-value=0.0098 Score=61.65 Aligned_cols=207 Identities=12% Similarity=0.166 Sum_probs=128.2
Q ss_pred EEcCCCC-EEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEE
Q 005277 358 SISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFI 436 (704)
Q Consensus 358 ~fs~dg~-~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l 436 (704)
.|.++.. ++.+--..+.|.-|+..+.. ...+ .+.+.+.++..-..+..|
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~-----------------------------~~~~-~~p~~~~~~~~~d~~g~L 80 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGK-----------------------------KRVF-PSPGGFSSGALIDAGGRL 80 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCc-----------------------------eEEE-ECCCCcccceeecCCCeE
Confidence 4666655 55555567778778765311 1111 122333444444444555
Q ss_pred EEEeCCCeEEEEeCCCCceeEEee----c-CCcCeeEEEEcCCCCEEEEEeC---------CCeEEEEECC-CCceeEEe
Q 005277 437 LSSSADTTIRLWSTKLNANLVCYK----G-HNYPVWDVQFNPQGHYFASSSH---------DRTARIWSMD-RIQPLRIM 501 (704)
Q Consensus 437 ~s~s~Dg~I~lwd~~~~~~~~~~~----~-h~~~V~~v~~sp~~~~l~sgs~---------dg~i~lwd~~-~~~~~~~~ 501 (704)
+++.. .+.+++.+++..+..+. + ......++...|+|.+.++... -..-.+|-++ .+..++.+
T Consensus 81 v~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~ 158 (307)
T COG3386 81 IACEH--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLL 158 (307)
T ss_pred EEEcc--ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEee
Confidence 55543 36777776555532221 1 1245668888999886655433 1122455555 56677777
Q ss_pred ccCCCCeeEEEEcCCCCEEEEEEC-CCcEEEEeCCC--C----cE-EEEeecCCCCEEEEEEecCCCEEEEEeCCC-eEE
Q 005277 502 AGHLSDVDCVRWHINCNYIATGSS-DKTVRLWDVSS--G----EC-VRIFIGHRSMILSLAMSPDGRYMASGDEDG-TIM 572 (704)
Q Consensus 502 ~~~~~~V~~v~~~p~~~~l~tgs~-dg~I~iwd~~~--~----~~-~~~~~~h~~~i~~l~~spdg~~l~sg~~dg-~I~ 572 (704)
..+...-+.++|+|+++.|+.+.. .+.|+-|++.. + +. ...+....+..-.++...+|.+.+++..+| .|.
T Consensus 159 ~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~ 238 (307)
T COG3386 159 DDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVV 238 (307)
T ss_pred cCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEE
Confidence 766777789999999988887765 47788887752 1 11 122223456667788888888776555554 899
Q ss_pred EEeCCCCeeeeeecCCCceeeeeee
Q 005277 573 MWDLASGRCVTPLMGHTSCVWTLAY 597 (704)
Q Consensus 573 iwdl~~~~~~~~~~~h~~~V~sl~~ 597 (704)
+|+.. |+++..+......+++++|
T Consensus 239 ~~~pd-G~l~~~i~lP~~~~t~~~F 262 (307)
T COG3386 239 RFNPD-GKLLGEIKLPVKRPTNPAF 262 (307)
T ss_pred EECCC-CcEEEEEECCCCCCccceE
Confidence 99987 9998888777677777777
No 348
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.67 E-value=0.029 Score=58.97 Aligned_cols=155 Identities=12% Similarity=0.046 Sum_probs=79.8
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEc--CCCCEEEEEe---------------------
Q 005277 426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN--PQGHYFASSS--------------------- 482 (704)
Q Consensus 426 ~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~s--p~~~~l~sgs--------------------- 482 (704)
+..++|+++.++-......|+-.|+.+.+....+......+-...|. .++..++-.-
T Consensus 85 g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a 164 (386)
T PF14583_consen 85 GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEA 164 (386)
T ss_dssp T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC
T ss_pred ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhh
Confidence 46677888887655555688999999988877777666666556664 3555544321
Q ss_pred -CCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEEC----CC-cEEEEeCC-CCcEEEEeecCC--CCEEEE
Q 005277 483 -HDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS----DK-TVRLWDVS-SGECVRIFIGHR--SMILSL 553 (704)
Q Consensus 483 -~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~----dg-~I~iwd~~-~~~~~~~~~~h~--~~i~~l 553 (704)
....|.-.|+.+++....+. ....+..+.|+|...-+++=|. +. .-|||-++ .|...+.+..+. ..+..=
T Consensus 165 ~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHE 243 (386)
T PF14583_consen 165 RPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHE 243 (386)
T ss_dssp ---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEE
T ss_pred CCCceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccc
Confidence 12345556777776655554 4566788999996555544332 22 23666554 233344343332 234555
Q ss_pred EEecCCCEEEEEe-----CCCeEEEEeCCCCee
Q 005277 554 AMSPDGRYMASGD-----EDGTIMMWDLASGRC 581 (704)
Q Consensus 554 ~~spdg~~l~sg~-----~dg~I~iwdl~~~~~ 581 (704)
-|.|||..|.--+ .+..|.-+|+.+++.
T Consensus 244 fw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~ 276 (386)
T PF14583_consen 244 FWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER 276 (386)
T ss_dssp EE-TTSS-EEEEEEETTT--EEEEEE-TTT--E
T ss_pred cccCCCCEEEEEeecCCCCceEEEeeCCCCCCc
Confidence 7899998765422 244566677777644
No 349
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.65 E-value=0.006 Score=65.64 Aligned_cols=208 Identities=13% Similarity=0.135 Sum_probs=117.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-------------------------------------------eEEe
Q 005277 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNAN-------------------------------------------LVCY 459 (704)
Q Consensus 423 ~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~-------------------------------------------~~~~ 459 (704)
.|+.+.|+++..-|++|...|.|.||.+...+. ...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 588999999988999999999999986542211 0112
Q ss_pred ecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec--c------CCCCeeEEEEcC-----C---CCEEEEE
Q 005277 460 KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA--G------HLSDVDCVRWHI-----N---CNYIATG 523 (704)
Q Consensus 460 ~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~--~------~~~~V~~v~~~p-----~---~~~l~tg 523 (704)
....++|++++.| +=-+++.|..+|.+.|.|++....+..-. . ....|+++.|.. | +-.+++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 2245889999998 55589999999999999998776654421 1 223578888862 2 2578999
Q ss_pred ECCCcEEEEeCC--C-Cc----EEEEeecCCCCEEEEE-EecC-C-------------------CEEEEEeCCCeEEEEe
Q 005277 524 SSDKTVRLWDVS--S-GE----CVRIFIGHRSMILSLA-MSPD-G-------------------RYMASGDEDGTIMMWD 575 (704)
Q Consensus 524 s~dg~I~iwd~~--~-~~----~~~~~~~h~~~i~~l~-~spd-g-------------------~~l~sg~~dg~I~iwd 575 (704)
+..|.+.+|.+. . +. .......+.++|..+. ++.+ | ..++....+..++++.
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~ 241 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK 241 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence 999999999875 1 21 1111224556666655 3221 1 1233344466799999
Q ss_pred CCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCC
Q 005277 576 LASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTS 655 (704)
Q Consensus 576 l~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~ 655 (704)
..+.+.........-.+..+.+-. ... ...+..|++-..+|.|+++.+..-
T Consensus 242 ~~~~k~~~K~~~~~~~~~~~~vv~--~~~---------------------------~~~~~~Lv~l~~~G~i~i~SLP~L 292 (395)
T PF08596_consen 242 PPKSKGAHKSFDDPFLCSSASVVP--TIS---------------------------RNGGYCLVCLFNNGSIRIYSLPSL 292 (395)
T ss_dssp TT---EEEEE-SS-EEEEEEEEEE--EE----------------------------EEEEEEEEEEETTSEEEEEETTT-
T ss_pred CCCCcccceeeccccccceEEEEe--ecc---------------------------cCCceEEEEEECCCcEEEEECCCc
Confidence 887776554442211222222200 000 123557888889999999999886
Q ss_pred ccccc
Q 005277 656 TKVLK 660 (704)
Q Consensus 656 ~~~~~ 660 (704)
+.+..
T Consensus 293 kei~~ 297 (395)
T PF08596_consen 293 KEIKS 297 (395)
T ss_dssp -EEEE
T ss_pred hHhhc
Confidence 65433
No 350
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.65 E-value=0.0027 Score=68.97 Aligned_cols=160 Identities=19% Similarity=0.195 Sum_probs=100.6
Q ss_pred CCccCeEEEEEcCCCCEEEEE---eCC-CeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEE-eCCCeE--EEEE
Q 005277 419 GHSGPVYSASFSPLGDFILSS---SAD-TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS-SHDRTA--RIWS 491 (704)
Q Consensus 419 ~h~~~V~~l~~sp~~~~l~s~---s~D-g~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sg-s~dg~i--~lwd 491 (704)
.-...+..-.|+|++..++-. ... ..+.++++.++....... ..+.-..-+|+|+|+.++.+ ..||.. .+.|
T Consensus 190 ~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~d 268 (425)
T COG0823 190 DSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMD 268 (425)
T ss_pred ccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEc
Confidence 344567778899999865532 222 469999999887654443 22333457899999887665 456654 5556
Q ss_pred CCCCceeEEeccCCCCeeEEEEcCCCCEEEEEEC-CC--cEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeC-
Q 005277 492 MDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-DK--TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE- 567 (704)
Q Consensus 492 ~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~-dg--~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~- 567 (704)
+......+ +....+.-..=.|+|+|++|+..+. .| .|.++|...+... .+....+.-..-.|+|||++|+..+.
T Consensus 269 l~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~-riT~~~~~~~~p~~SpdG~~i~~~~~~ 346 (425)
T COG0823 269 LDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT-RLTFSGGGNSNPVWSPDGDKIVFESSS 346 (425)
T ss_pred CCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee-EeeccCCCCcCccCCCCCCEEEEEecc
Confidence 66655333 3323233335678999999987764 33 3667777665543 33333333337889999999987664
Q ss_pred CCe--EEEEeCCCCee
Q 005277 568 DGT--IMMWDLASGRC 581 (704)
Q Consensus 568 dg~--I~iwdl~~~~~ 581 (704)
+|. |.+.|+.++..
T Consensus 347 ~g~~~i~~~~~~~~~~ 362 (425)
T COG0823 347 GGQWDIDKNDLASGGK 362 (425)
T ss_pred CCceeeEEeccCCCCc
Confidence 344 66666665543
No 351
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.64 E-value=0.007 Score=64.81 Aligned_cols=93 Identities=18% Similarity=0.272 Sum_probs=62.9
Q ss_pred cCCCCEEEEE---------eCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEE
Q 005277 430 SPLGDFILSS---------SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI 500 (704)
Q Consensus 430 sp~~~~l~s~---------s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~ 500 (704)
|||+++++.. +..+.+.+||+.+++....... ...+....|||+|+.++... ++.|.+++..++...+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 5778877653 2346789999998655443333 56788999999999998885 58899999877754433
Q ss_pred eccC-----------------CCCeeEEEEcCCCCEEEEEE
Q 005277 501 MAGH-----------------LSDVDCVRWHINCNYIATGS 524 (704)
Q Consensus 501 ~~~~-----------------~~~V~~v~~~p~~~~l~tgs 524 (704)
-... .+.-..+-|+|++++|+...
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence 2211 12335788999999998754
No 352
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.61 E-value=0.036 Score=57.27 Aligned_cols=247 Identities=13% Similarity=0.091 Sum_probs=141.4
Q ss_pred EEEEcCCCCEEEEEe----------CCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277 356 CASISQDGSLVAGGF----------SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (704)
Q Consensus 356 ~~~fs~dg~~lasg~----------~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (704)
.+..|||++.+.++. ..-.|.+||..+......... |.+. +. ... ....
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~i---------------P~k~-R~---~~~--~~~~ 98 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEI---------------PPKP-RA---QVV--PYKN 98 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEE---------------TTS--B-----BS----GG
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEec---------------CCcc-hh---eec--cccc
Confidence 366799999888743 345699999887433221111 1100 00 000 1123
Q ss_pred EEEEcCCCCEEEEE--eCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECC-CCceeEEe-
Q 005277 426 SASFSPLGDFILSS--SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD-RIQPLRIM- 501 (704)
Q Consensus 426 ~l~~sp~~~~l~s~--s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~-~~~~~~~~- 501 (704)
.++++.|+++++.. +--.+|.|.|+...+.+..+.-. .++.+--+ ...-|.+-|.||.+.-..++ .++..+..
T Consensus 99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~iyP~-~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t 175 (342)
T PF06433_consen 99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLIYPS-GNRGFSMLCGDGSLLTVTLDADGKEAQKST 175 (342)
T ss_dssp GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEEEEEE-ETTEEEEEETTSCEEEEEETSTSSEEEEEE
T ss_pred ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEEEEec-CCCceEEEecCCceEEEEECCCCCEeEeec
Confidence 45788999987765 45567999999988887776632 22222222 23458888999999999998 45443222
Q ss_pred ---ccCCCCe-eEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEE--Eeec----------CCCCEEEEEEecCCCEEEEE
Q 005277 502 ---AGHLSDV-DCVRWHINCNYIATGSSDKTVRLWDVSSGECVR--IFIG----------HRSMILSLAMSPDGRYMASG 565 (704)
Q Consensus 502 ---~~~~~~V-~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~--~~~~----------h~~~i~~l~~spdg~~l~sg 565 (704)
.....++ ..-.+...+..++.-+.+|.|+--|+....... .+.. ..+...-+++++..+.|++.
T Consensus 176 ~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvL 255 (342)
T PF06433_consen 176 KVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVL 255 (342)
T ss_dssp EESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEE
T ss_pred cccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEE
Confidence 1111222 223344455555557789999998887554221 1110 01223447777765555542
Q ss_pred e---CC-------CeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCC
Q 005277 566 D---ED-------GTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEG 635 (704)
Q Consensus 566 ~---~d-------g~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g 635 (704)
- .+ ..|.++|+.+++.+.++.. ..++.++.. +.+.
T Consensus 256 Mh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~V----------------------------------sqd~ 300 (342)
T PF06433_consen 256 MHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAV----------------------------------SQDD 300 (342)
T ss_dssp EEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEE----------------------------------ESSS
T ss_pred ecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEE----------------------------------ccCC
Confidence 2 11 1588889999999988863 235666666 4444
Q ss_pred C-EEEE-EeCCCcEEEEeCCCCcccccc
Q 005277 636 S-LLAS-GSADCTVKLWDVTTSTKVLKT 661 (704)
Q Consensus 636 ~-~las-gs~Dg~V~iWd~~~~~~~~~~ 661 (704)
. +|++ ...++.+.|||..+++.+...
T Consensus 301 ~P~L~~~~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 301 KPLLYALSAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp S-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred CcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence 3 5554 456899999999999776544
No 353
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=0.035 Score=60.01 Aligned_cols=199 Identities=18% Similarity=0.194 Sum_probs=138.4
Q ss_pred eEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeC---CCeEEEEECCCCceeE
Q 005277 424 VYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH---DRTARIWSMDRIQPLR 499 (704)
Q Consensus 424 V~~l~~sp~~~~l~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~---dg~i~lwd~~~~~~~~ 499 (704)
-.+++.++.+..++ +...++.|.+.|..+.........-. ....++++|++..+.++.. ++++.+.|..+.+.+.
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 34677888887554 44456899999988777766655333 5568999999988777765 6889999988888777
Q ss_pred EeccCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCcEEE-E---eecCCCCEEEEEEecCCCEEEEEeCC---CeE
Q 005277 500 IMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVR-I---FIGHRSMILSLAMSPDGRYMASGDED---GTI 571 (704)
Q Consensus 500 ~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~-~---~~~h~~~i~~l~~spdg~~l~sg~~d---g~I 571 (704)
.......+ ..+++.|+|+.+++.. .++.|.+.|..+....+ . ...-......+.++|+|.++.+.... +.+
T Consensus 155 ~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v 233 (381)
T COG3391 155 TIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNV 233 (381)
T ss_pred EEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceE
Confidence 75544344 8899999999776665 78999999977665553 1 01122334678999999977665443 589
Q ss_pred EEEeCCCCeeeeeecCCCc-eeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEe-CCCcEEE
Q 005277 572 MMWDLASGRCVTPLMGHTS-CVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGS-ADCTVKL 649 (704)
Q Consensus 572 ~iwdl~~~~~~~~~~~h~~-~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs-~Dg~V~i 649 (704)
...|..++.....-..-.. ....+.. +|+|..+.+.. ..+.|.+
T Consensus 234 ~~id~~~~~v~~~~~~~~~~~~~~v~~----------------------------------~p~g~~~yv~~~~~~~V~v 279 (381)
T COG3391 234 LKIDTATGNVTATDLPVGSGAPRGVAV----------------------------------DPAGKAAYVANSQGGTVSV 279 (381)
T ss_pred EEEeCCCceEEEeccccccCCCCceeE----------------------------------CCCCCEEEEEecCCCeEEE
Confidence 9999888876654211111 2223333 88999887774 4488999
Q ss_pred EeCCCCccc
Q 005277 650 WDVTTSTKV 658 (704)
Q Consensus 650 Wd~~~~~~~ 658 (704)
-|..+....
T Consensus 280 id~~~~~v~ 288 (381)
T COG3391 280 IDGATDRVV 288 (381)
T ss_pred EeCCCCcee
Confidence 888876544
No 354
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.57 E-value=0.03 Score=60.54 Aligned_cols=204 Identities=16% Similarity=0.181 Sum_probs=142.4
Q ss_pred EEEEEEcCCCC-EEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCC
Q 005277 354 LNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL 432 (704)
Q Consensus 354 V~~~~fs~dg~-~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 432 (704)
-.+++.++++. ..++...+..|.+.|...... ......+. ....++++|+
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~---------------------------~~~~~vG~--~P~~~~~~~~ 126 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV---------------------------LGSIPVGL--GPVGLAVDPD 126 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccce---------------------------eeEeeecc--CCceEEECCC
Confidence 35677888877 555555678899998543111 11111122 4568999999
Q ss_pred CCEEEEEeC---CCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEe-CCCeEEEEECCCCceeE-E---eccC
Q 005277 433 GDFILSSSA---DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWSMDRIQPLR-I---MAGH 504 (704)
Q Consensus 433 ~~~l~s~s~---Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs-~dg~i~lwd~~~~~~~~-~---~~~~ 504 (704)
++.+..+.. ++++.+.|..+.+.+.....-..+ ..+++.|+|..++.+. .++++.+.|.......+ . ...-
T Consensus 127 ~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~ 205 (381)
T COG3391 127 GKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGV 205 (381)
T ss_pred CCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceecccccccccc
Confidence 987776654 789999999988888775544455 8999999999766665 78999999977655443 1 0112
Q ss_pred CCCeeEEEEcCCCCEEEEEECC---CcEEEEeCCCCcEEEE-ee-cCCCCEEEEEEecCCCEEEEEeC-CCeEEEEeCCC
Q 005277 505 LSDVDCVRWHINCNYIATGSSD---KTVRLWDVSSGECVRI-FI-GHRSMILSLAMSPDGRYMASGDE-DGTIMMWDLAS 578 (704)
Q Consensus 505 ~~~V~~v~~~p~~~~l~tgs~d---g~I~iwd~~~~~~~~~-~~-~h~~~i~~l~~spdg~~l~sg~~-dg~I~iwdl~~ 578 (704)
...-..+.+.|+++++.+.... +.+...|..++..... .. +.. ....+.++|+|.++.+... .+.+.+-|..+
T Consensus 206 ~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~ 284 (381)
T COG3391 206 GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGAT 284 (381)
T ss_pred CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCC
Confidence 2334568899999977665543 5899999998877665 22 222 5667899999999888744 48899999988
Q ss_pred CeeeeeecCC
Q 005277 579 GRCVTPLMGH 588 (704)
Q Consensus 579 ~~~~~~~~~h 588 (704)
......+...
T Consensus 285 ~~v~~~~~~~ 294 (381)
T COG3391 285 DRVVKTGPTG 294 (381)
T ss_pred Cceeeeeccc
Confidence 8777765443
No 355
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.55 E-value=0.047 Score=53.31 Aligned_cols=143 Identities=8% Similarity=-0.015 Sum_probs=96.6
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEE
Q 005277 433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR 512 (704)
Q Consensus 433 ~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~ 512 (704)
..+++.||..+.+..-|..+|+....-.- ...|-+-+.- -|.+++.|+..|.+++.+..++.....+..-..--....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ 100 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence 35677888888888888888877654321 1122221111 477899999999999999999988877764322222334
Q ss_pred EcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 005277 513 WHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA 577 (704)
Q Consensus 513 ~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~ 577 (704)
..+++..+..|+.|++.+..|.++..++...+-..+.-.+-+..|-...|+.+...|.+.--...
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~ 165 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKN 165 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccC
Confidence 56889999999999999999999999998765444444445566633344455555555444433
No 356
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.49 E-value=0.064 Score=55.10 Aligned_cols=148 Identities=15% Similarity=0.143 Sum_probs=92.1
Q ss_pred CCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEe
Q 005277 361 QDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSS 440 (704)
Q Consensus 361 ~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s 440 (704)
..++.|+.|+.+| +.++++.... ..... .+..+|..+...|+-+.|++-+
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~---------------------------~~~~i--~~~~~I~ql~vl~~~~~llvLs 54 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPS---------------------------KPTRI--LKLSSITQLSVLPELNLLLVLS 54 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCc---------------------------cceeE--eecceEEEEEEecccCEEEEEc
Confidence 3578899999999 8888872210 01111 1223499999999888777665
Q ss_pred CCCeEEEEeCCCCceeEEe--------------ecCCcCeeEEE--EcCCCCEEEEEeCCCeEEEEECCCC-----ceeE
Q 005277 441 ADTTIRLWSTKLNANLVCY--------------KGHNYPVWDVQ--FNPQGHYFASSSHDRTARIWSMDRI-----QPLR 499 (704)
Q Consensus 441 ~Dg~I~lwd~~~~~~~~~~--------------~~h~~~V~~v~--~sp~~~~l~sgs~dg~i~lwd~~~~-----~~~~ 499 (704)
|+.+.++++......... ......+..++ -...+...+.....+.|.+|..... ...+
T Consensus 55 -d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~k 133 (275)
T PF00780_consen 55 -DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLK 133 (275)
T ss_pred -CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeE
Confidence 499999998765443311 11223344444 1123334444445568999887653 3444
Q ss_pred EeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEe
Q 005277 500 IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF 543 (704)
Q Consensus 500 ~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~ 543 (704)
.+. -...+.+++|. ++.++.|..+ ...+.|+.++.....+
T Consensus 134 e~~-lp~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 134 EIS-LPDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELL 173 (275)
T ss_pred EEE-cCCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEe
Confidence 444 34778899998 5678888754 4889999987765544
No 357
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.43 E-value=0.0076 Score=65.78 Aligned_cols=215 Identities=15% Similarity=0.169 Sum_probs=104.3
Q ss_pred eeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCccc--ccCCCCCccceeeccCCc----
Q 005277 348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRED--IIGPNGRKRSYTLYQGHS---- 421 (704)
Q Consensus 348 ~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~h~---- 421 (704)
....-....+.++|+|++++++ .||.-.|+................ ....... ...........+.+....
T Consensus 29 g~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~G~g~~~--vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i 105 (443)
T PF04053_consen 29 GSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAFGSGLSF--VWSSRNRYAVLESSSTIKIYKNFKNEVVKSI 105 (443)
T ss_dssp EE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEEEE-SEE--EE-TSSEEEEE-TTS-EEEEETTEE-TT---
T ss_pred CCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccccCceeEE--EEecCccEEEEECCCeEEEEEcCccccceEE
Confidence 3344457889999999999995 577777777432221111111000 0000000 000001111111111111
Q ss_pred ---cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCC---
Q 005277 422 ---GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI--- 495 (704)
Q Consensus 422 ---~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~--- 495 (704)
..+..|-. |..|+..+.+ .|.+||+.+++.+..+... +|..+.|+++|.+++..+.+ ++.+++.+..
T Consensus 106 ~~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~ 178 (443)
T PF04053_consen 106 KLPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVA 178 (443)
T ss_dssp --SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHH
T ss_pred cCCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecchhcc
Confidence 12222222 7777766654 8999999999999888743 48999999999999998754 6777765432
Q ss_pred --------ceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeC
Q 005277 496 --------QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE 567 (704)
Q Consensus 496 --------~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~ 567 (704)
.....+..-...|.+.+|..+ .++..+.. .++. +..|..- ++..-..++.=+.+.|..+.++....
T Consensus 179 ~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~-~i~~ld~~~yllgy~~~~~~ly~~Dr 252 (443)
T PF04053_consen 179 AIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETG-IIAHLDKPLYLLGYLPKENRLYLIDR 252 (443)
T ss_dssp HBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEE-EEEE-SS--EEEEEETTTTEEEEE-T
T ss_pred cccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcc-eEEEcCCceEEEEEEccCCEEEEEEC
Confidence 023333322567888888765 44444434 5555 3344432 22222456667777777778888888
Q ss_pred CCeEEEEeCCC
Q 005277 568 DGTIMMWDLAS 578 (704)
Q Consensus 568 dg~I~iwdl~~ 578 (704)
|+.|..+.+..
T Consensus 253 ~~~v~~~~ld~ 263 (443)
T PF04053_consen 253 DGNVISYELDL 263 (443)
T ss_dssp T--EEEEE--H
T ss_pred CCCEEEEEECH
Confidence 88888887653
No 358
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.00078 Score=72.92 Aligned_cols=94 Identities=15% Similarity=0.167 Sum_probs=81.8
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCee-EEEEcCCCCEEEEEeCCCeEEEEECCCCceeE
Q 005277 421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVW-DVQFNPQGHYFASSSHDRTARIWSMDRIQPLR 499 (704)
Q Consensus 421 ~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~-~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~ 499 (704)
...|.-+.|+|.-..+|.+..+|.|.+..+. .+.+.++.-|..+++ +++|.|||+.+|+|-.||+|++.|++++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4568899999999999999999999999998 889999987888888 99999999999999999999999999988776
Q ss_pred Eec-cCCCCeeEEEEcC
Q 005277 500 IMA-GHLSDVDCVRWHI 515 (704)
Q Consensus 500 ~~~-~~~~~V~~v~~~p 515 (704)
.+. .-..+|.++-|.+
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 632 2446788888863
No 359
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.33 E-value=0.024 Score=63.42 Aligned_cols=202 Identities=12% Similarity=0.094 Sum_probs=121.8
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEeecCCc------Cee--EEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccC
Q 005277 433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNY------PVW--DVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH 504 (704)
Q Consensus 433 ~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~------~V~--~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~ 504 (704)
+..++.++.++.+...|..+++.+..+..... .+. .+... ++..++.++.++.|..+|.++++.+..+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 45577778889999999999988877654322 110 11111 2267888889999999999999988776643
Q ss_pred CCC-----ee-EEEEcCCCCEEEEEE---------CCCcEEEEeCCCCcEEEEeecCCCC--------------------
Q 005277 505 LSD-----VD-CVRWHINCNYIATGS---------SDKTVRLWDVSSGECVRIFIGHRSM-------------------- 549 (704)
Q Consensus 505 ~~~-----V~-~v~~~p~~~~l~tgs---------~dg~I~iwd~~~~~~~~~~~~h~~~-------------------- 549 (704)
... +. ...+. +..++.++ .+|.+..+|..+|+.+..+......
T Consensus 140 ~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 140 DQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred CCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 221 11 11221 24555554 3678999999999988876532110
Q ss_pred E-EEEEEecCCCEEEEEeCCC------------------eEEEEeCCCCeeeeeecCCCceeeeeeeeeeehcccccccc
Q 005277 550 I-LSLAMSPDGRYMASGDEDG------------------TIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKI 610 (704)
Q Consensus 550 i-~~l~~spdg~~l~sg~~dg------------------~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~ 610 (704)
+ .+.++.+.+..++.++.++ .|.-+|+.+|+.+-.++.-....+.+......
T Consensus 218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p--------- 288 (488)
T cd00216 218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQP--------- 288 (488)
T ss_pred ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCC---------
Confidence 0 1344555567788887665 68888999988876653211111111000000
Q ss_pred ccccccceeeeeeeEEeecccCCCCC---EEEEEeCCCcEEEEeCCCCcccccc
Q 005277 611 SDKVSTGFLFYSLTIIYFGCASCEGS---LLASGSADCTVKLWDVTTSTKVLKT 661 (704)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~s~~g~---~lasgs~Dg~V~iWd~~~~~~~~~~ 661 (704)
.+. ....-++. .++.++.+|.+...|..+++.+...
T Consensus 289 --------------~~~-~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~ 327 (488)
T cd00216 289 --------------SLA-DIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISAR 327 (488)
T ss_pred --------------eEE-eccccCCCeeEEEEEECCCceEEEEECCCCcEeeEe
Confidence 000 00011232 6778888999999999998877654
No 360
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.30 E-value=0.052 Score=57.25 Aligned_cols=185 Identities=14% Similarity=0.181 Sum_probs=108.6
Q ss_pred CCEEEEEeC---------C-CcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCC
Q 005277 363 GSLVAGGFS---------D-SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL 432 (704)
Q Consensus 363 g~~lasg~~---------d-g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 432 (704)
..+|++|+. . |.|.++++...+. ....-....-....++|++++-.
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~----------------------~~~~l~~i~~~~~~g~V~ai~~~-- 97 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPE----------------------NNFKLKLIHSTEVKGPVTAICSF-- 97 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS---------------------------EEEEEEEEEESS-EEEEEEE--
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccc----------------------cceEEEEEEEEeecCcceEhhhh--
Confidence 578888864 2 8899999876200 00001111122346889999877
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEeecC--CcCeeEEEEcCCCCEEEEEeCCCeEEEEECCC-CceeEEecc--CCCC
Q 005277 433 GDFILSSSADTTIRLWSTKLNANLVCYKGH--NYPVWDVQFNPQGHYFASSSHDRTARIWSMDR-IQPLRIMAG--HLSD 507 (704)
Q Consensus 433 ~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h--~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~-~~~~~~~~~--~~~~ 507 (704)
+.+|+.+. .+.|.+|++...+.+.....+ ...+.++.. .++++++|...+.+.++..+. ...+..+.. ....
T Consensus 98 ~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~ 174 (321)
T PF03178_consen 98 NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRW 174 (321)
T ss_dssp TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BE
T ss_pred CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCcc
Confidence 34455554 468999999877723222222 335555555 467999999888898886543 222333332 3345
Q ss_pred eeEEEEcCCCCEEEEEECCCcEEEEeCCC-------Cc--EEEEee-cCCCCEEEE---EEec--CCC------EEEEEe
Q 005277 508 VDCVRWHINCNYIATGSSDKTVRLWDVSS-------GE--CVRIFI-GHRSMILSL---AMSP--DGR------YMASGD 566 (704)
Q Consensus 508 V~~v~~~p~~~~l~tgs~dg~I~iwd~~~-------~~--~~~~~~-~h~~~i~~l---~~sp--dg~------~l~sg~ 566 (704)
+.++.|-++++.++++..+|.+.++.... +. ...... .....|+++ ++.| .+. .++.++
T Consensus 175 v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T 254 (321)
T PF03178_consen 175 VTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGT 254 (321)
T ss_dssp EEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEE
T ss_pred EEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEe
Confidence 78888886778999999999999998752 22 222222 233567777 5455 222 477888
Q ss_pred CCCeEEEE
Q 005277 567 EDGTIMMW 574 (704)
Q Consensus 567 ~dg~I~iw 574 (704)
.+|.|.+.
T Consensus 255 ~~G~Ig~l 262 (321)
T PF03178_consen 255 VDGSIGVL 262 (321)
T ss_dssp TTS-EEEE
T ss_pred cCCEEEEE
Confidence 89988844
No 361
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.29 E-value=0.13 Score=56.23 Aligned_cols=157 Identities=18% Similarity=0.147 Sum_probs=91.9
Q ss_pred CeEEEEEcCCCCEEEEE-eCCC----eEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCC-----------Ce
Q 005277 423 PVYSASFSPLGDFILSS-SADT----TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD-----------RT 486 (704)
Q Consensus 423 ~V~~l~~sp~~~~l~s~-s~Dg----~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~d-----------g~ 486 (704)
.+...+++|++++++-+ +..| +++++|+.+++.+...-... ....+.|.++++.|+....+ ..
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 34567899999988743 4434 49999999997665321111 12239999998887766533 34
Q ss_pred EEEEECCCCce--eEEeccCCCC--eeEEEEcCCCCEEEEEECC----CcEEEEeCCCC----cEEEEeecCCCCEEEEE
Q 005277 487 ARIWSMDRIQP--LRIMAGHLSD--VDCVRWHINCNYIATGSSD----KTVRLWDVSSG----ECVRIFIGHRSMILSLA 554 (704)
Q Consensus 487 i~lwd~~~~~~--~~~~~~~~~~--V~~v~~~p~~~~l~tgs~d----g~I~iwd~~~~----~~~~~~~~h~~~i~~l~ 554 (704)
|+.|.+.+... ...+...... ...+..++++++|+..+.. ..+++.|+..+ .....+......+....
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV 283 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence 78888877643 3555544433 5678889999998865432 34788888775 22333333333443333
Q ss_pred EecCCCEEEEE---eCCCeEEEEeCCCCe
Q 005277 555 MSPDGRYMASG---DEDGTIMMWDLASGR 580 (704)
Q Consensus 555 ~spdg~~l~sg---~~dg~I~iwdl~~~~ 580 (704)
-+..+.+++.. ...+.|.-.++....
T Consensus 284 ~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~ 312 (414)
T PF02897_consen 284 DHHGDRLYILTNDDAPNGRLVAVDLADPS 312 (414)
T ss_dssp EEETTEEEEEE-TT-TT-EEEEEETTSTS
T ss_pred EccCCEEEEeeCCCCCCcEEEEecccccc
Confidence 33344444433 234567777776654
No 362
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.25 E-value=0.0065 Score=69.92 Aligned_cols=142 Identities=15% Similarity=0.176 Sum_probs=99.0
Q ss_pred CCEEEEE-eCCCeEEEEeCCCCceeEEeecCCcC-eeEEEEcC-----CCCEEEEEeCCCeEEEEECCCCc-eeEEec--
Q 005277 433 GDFILSS-SADTTIRLWSTKLNANLVCYKGHNYP-VWDVQFNP-----QGHYFASSSHDRTARIWSMDRIQ-PLRIMA-- 502 (704)
Q Consensus 433 ~~~l~s~-s~Dg~I~lwd~~~~~~~~~~~~h~~~-V~~v~~sp-----~~~~l~sgs~dg~i~lwd~~~~~-~~~~~~-- 502 (704)
..+|+.. .....|+-.|++.|+.+..++.|... |.+++-.. ....-+.|-.++.+..||.+-.. .+..-.
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 3444433 45577999999999999999877643 55443221 13345677788999999998532 221111
Q ss_pred --cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 005277 503 --GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576 (704)
Q Consensus 503 --~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl 576 (704)
.......|++-..+| +||+|+.+|.||+||--..+....+.+-..+|.+|..+.||+||++.+. ..+.+++.
T Consensus 573 ~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred ccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 234567788766665 8999999999999995333334455677889999999999999987664 56777775
No 363
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.24 E-value=0.061 Score=56.74 Aligned_cols=140 Identities=16% Similarity=0.175 Sum_probs=89.5
Q ss_pred CCEEEEEeC----------CCeEEEEeCCCC----ceeEEe--ecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 005277 433 GDFILSSSA----------DTTIRLWSTKLN----ANLVCY--KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ 496 (704)
Q Consensus 433 ~~~l~s~s~----------Dg~I~lwd~~~~----~~~~~~--~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~ 496 (704)
..+++.|+. .|.|.++++... ..+... ....++|++++-- ++. ++++. ++.+.+|++...+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcc
Confidence 457776643 289999999874 222222 2357889988876 444 44443 4899999998877
Q ss_pred eeEEeccCC--CCeeEEEEcCCCCEEEEEECCCcEEEEeCCC-CcEEEEee--cCCCCEEEEEEecCCCEEEEEeCCCeE
Q 005277 497 PLRIMAGHL--SDVDCVRWHINCNYIATGSSDKTVRLWDVSS-GECVRIFI--GHRSMILSLAMSPDGRYMASGDEDGTI 571 (704)
Q Consensus 497 ~~~~~~~~~--~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~-~~~~~~~~--~h~~~i~~l~~spdg~~l~sg~~dg~I 571 (704)
.+.....+. ..+.++.. .+++|++|.....+.++..+. +..+..+. .....++++.|-++++.++++..+|.+
T Consensus 119 ~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl 196 (321)
T PF03178_consen 119 TLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNL 196 (321)
T ss_dssp SEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEE
T ss_pred cchhhheecceEEEEEEec--cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeE
Confidence 232222222 34555554 467999999999998885543 33233332 234468899998777899999999999
Q ss_pred EEEeCC
Q 005277 572 MMWDLA 577 (704)
Q Consensus 572 ~iwdl~ 577 (704)
.++...
T Consensus 197 ~~l~~~ 202 (321)
T PF03178_consen 197 FVLRYN 202 (321)
T ss_dssp EEEEE-
T ss_pred EEEEEC
Confidence 999875
No 364
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.0014 Score=71.07 Aligned_cols=93 Identities=20% Similarity=0.283 Sum_probs=78.4
Q ss_pred CcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCee-EEEEcCCCCEEEEEECCCcEEEEeCCCCcEEE
Q 005277 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVD-CVRWHINCNYIATGSSDKTVRLWDVSSGECVR 541 (704)
Q Consensus 463 ~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~-~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~ 541 (704)
...|.-+.|+|.-..+|++..+|.+.+..+. .+.+..+.-+...++ +++|.|+|+.||+|-.||+|++.|+.++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3457789999999999999999999999988 777888876777777 99999999999999999999999999988776
Q ss_pred Eee-cCCCCEEEEEEe
Q 005277 542 IFI-GHRSMILSLAMS 556 (704)
Q Consensus 542 ~~~-~h~~~i~~l~~s 556 (704)
.+. .-...|+++-|+
T Consensus 99 ~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWD 114 (665)
T ss_pred ccccccccchheeecc
Confidence 632 234567777786
No 365
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.23 E-value=0.11 Score=53.81 Aligned_cols=146 Identities=15% Similarity=0.132 Sum_probs=89.3
Q ss_pred EEEcCCCCEE-EEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc--
Q 005277 427 ASFSPLGDFI-LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG-- 503 (704)
Q Consensus 427 l~~sp~~~~l-~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~-- 503 (704)
-.|.++...| .+--..+.|.-|+..++.... +. +...+.++..-..+..++++. ..+.+++.+++..+..+..
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~-~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRV-FP-SPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEE-EE-CCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEecccc
Confidence 3577777744 466677889999988654332 22 222334444443444455543 3466677765555333321
Q ss_pred ---CCCCeeEEEEcCCCCEEEEEEC-----------CCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCC-
Q 005277 504 ---HLSDVDCVRWHINCNYIATGSS-----------DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED- 568 (704)
Q Consensus 504 ---~~~~V~~v~~~p~~~~l~tgs~-----------dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~d- 568 (704)
.....+.+...|+|.+.++... -|.|+.+|. .+..++....+-..-+.|+||||++.|+.+...
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~ 184 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPA 184 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCC
Confidence 1234566788899887766433 133444443 577777776666667889999999888777654
Q ss_pred CeEEEEeCC
Q 005277 569 GTIMMWDLA 577 (704)
Q Consensus 569 g~I~iwdl~ 577 (704)
+.|.-|++.
T Consensus 185 ~~i~r~~~d 193 (307)
T COG3386 185 NRIHRYDLD 193 (307)
T ss_pred CeEEEEecC
Confidence 778888775
No 366
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.21 E-value=0.037 Score=62.87 Aligned_cols=126 Identities=13% Similarity=0.154 Sum_probs=73.4
Q ss_pred CCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEe------CCCeEEEEECC-CCceeEEeccCCCCeeEEEEc
Q 005277 442 DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS------HDRTARIWSMD-RIQPLRIMAGHLSDVDCVRWH 514 (704)
Q Consensus 442 Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs------~dg~i~lwd~~-~~~~~~~~~~~~~~V~~v~~~ 514 (704)
+|.+.-.+-..-..+.-..+....+.+.+++|+|..++... .|..-.||-.. .+.......+. ....-.|+
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWs 405 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWS 405 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceEC
Confidence 56665443222122222223334678899999999887665 24444555432 22232223332 37888999
Q ss_pred CCCCEEEEEECC------------CcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEE
Q 005277 515 INCNYIATGSSD------------KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMM 573 (704)
Q Consensus 515 p~~~~l~tgs~d------------g~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~i 573 (704)
|+|..|++.+.. +.+.+.++..+.... ...+.|..+.|||||..++... +|.|.+
T Consensus 406 pDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 406 LDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred CCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 999888877533 223333443333222 2346799999999999888765 477776
No 367
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.12 E-value=0.036 Score=62.90 Aligned_cols=146 Identities=13% Similarity=0.107 Sum_probs=87.9
Q ss_pred cCeEEEEEcCCCCEEEEEe------CCC--eEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCC---------
Q 005277 422 GPVYSASFSPLGDFILSSS------ADT--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD--------- 484 (704)
Q Consensus 422 ~~V~~l~~sp~~~~l~s~s------~Dg--~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~d--------- 484 (704)
..+.+.+++|+|+.++... .|. .|.+++.. +.......+. ..+.-.|+|+|..+++.+..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceECCCCCceEEEecCcceEEEecc
Confidence 3577889999999877544 244 44444542 2222222322 37788999998888777532
Q ss_pred ---CeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEE---EeCCCCcEEEE-----e-ecCCCCEEE
Q 005277 485 ---RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRL---WDVSSGECVRI-----F-IGHRSMILS 552 (704)
Q Consensus 485 ---g~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~i---wd~~~~~~~~~-----~-~~h~~~i~~ 552 (704)
+.+.+.+++.+.... .....|..+.|+|||..++... +|.|++ -....|. .+. + .+-...+.+
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~~ 501 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAVS 501 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc-eeecccEEeecccCCcccc
Confidence 223333443333222 2345799999999999998876 577777 4434453 221 2 223334688
Q ss_pred EEEecCCCEEEEEeCCCeEEEEeC
Q 005277 553 LAMSPDGRYMASGDEDGTIMMWDL 576 (704)
Q Consensus 553 l~~spdg~~l~sg~~dg~I~iwdl 576 (704)
+.|.+++.++ ++..++...+|.+
T Consensus 502 l~W~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 502 LDWRTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred ceEecCCEEE-EEecCCCCceEEE
Confidence 9999998854 5555554555544
No 368
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.12 E-value=0.16 Score=55.46 Aligned_cols=172 Identities=13% Similarity=0.059 Sum_probs=91.5
Q ss_pred eEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe-------ccCCCCeeEEEEcCC
Q 005277 444 TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM-------AGHLSDVDCVRWHIN 516 (704)
Q Consensus 444 ~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~-------~~~~~~V~~v~~~p~ 516 (704)
.|++|+.. |+.+..+.-..+.|.++.|..+.. +++-..||.++++|+.... ...+ .-....+.+..+..+
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~ 138 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKN 138 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCCe-EEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCC
Confidence 58999887 666665543337899999997654 5566689999999986433 1111 111111222233335
Q ss_pred CCEEEEEECCCcEEEEeCCCCc-EEEEee---c-------CCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeee
Q 005277 517 CNYIATGSSDKTVRLWDVSSGE-CVRIFI---G-------HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL 585 (704)
Q Consensus 517 ~~~l~tgs~dg~I~iwd~~~~~-~~~~~~---~-------h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~ 585 (704)
|-.+.+ .++.+.+..--... ..+.+. + +........++.+....+....++.+.+.+-...+. +
T Consensus 139 GivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i 213 (410)
T PF04841_consen 139 GIVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I 213 (410)
T ss_pred CEEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c
Confidence 533333 34444444322211 111110 0 000000023344444444445555555444322211 1
Q ss_pred cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccc
Q 005277 586 MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKV 658 (704)
Q Consensus 586 ~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~ 658 (704)
. ..+++..++. ||+|+++|.-..+|.+.|....-.+..
T Consensus 214 ~-~~~~i~~iav----------------------------------Spng~~iAl~t~~g~l~v~ssDf~~~~ 251 (410)
T PF04841_consen 214 D-SDGPIIKIAV----------------------------------SPNGKFIALFTDSGNLWVVSSDFSEKL 251 (410)
T ss_pred c-CCCCeEEEEE----------------------------------CCCCCEEEEEECCCCEEEEECccccee
Confidence 1 2356777777 999999999999999999886655443
No 369
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.11 E-value=0.0015 Score=43.35 Aligned_cols=39 Identities=49% Similarity=0.969 Sum_probs=34.6
Q ss_pred CcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEe
Q 005277 537 GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD 575 (704)
Q Consensus 537 ~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwd 575 (704)
+++...+..|...|.++.|++++.++++++.||.+++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 355667778899999999999999999999999999996
No 370
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.06 E-value=0.36 Score=52.07 Aligned_cols=44 Identities=30% Similarity=0.404 Sum_probs=38.6
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCc
Q 005277 547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTS 590 (704)
Q Consensus 547 ~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~ 590 (704)
...+.+++.+|++++.++...=|.|.++|+.++..++.++|..+
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRd 350 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRD 350 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCcc
Confidence 34578899999999999988889999999999999999888764
No 371
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.04 E-value=0.18 Score=52.22 Aligned_cols=153 Identities=13% Similarity=0.125 Sum_probs=94.1
Q ss_pred CEEEEEeCCCeEEEEeCCC-CceeEE----eecCCcCee-EEEEcCCCCEEEEEeCCCeEEEEECCCCcee--EEec---
Q 005277 434 DFILSSSADTTIRLWSTKL-NANLVC----YKGHNYPVW-DVQFNPQGHYFASSSHDRTARIWSMDRIQPL--RIMA--- 502 (704)
Q Consensus 434 ~~l~s~s~Dg~I~lwd~~~-~~~~~~----~~~h~~~V~-~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~--~~~~--- 502 (704)
+.+.+-|.||++.-..++. |+.... |..-..++. .-++...+..++--+.+|.|+--|+...... ..+.
T Consensus 148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t 227 (342)
T PF06433_consen 148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLT 227 (342)
T ss_dssp TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-
T ss_pred CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccC
Confidence 4577888899999888874 443322 111122222 2234444545555678899988888765432 1111
Q ss_pred -------cCCCCeeEEEEcCCCCEEEEEEC---CC-------cEEEEeCCCCcEEEEeecCCCCEEEEEEecCCC-EEEE
Q 005277 503 -------GHLSDVDCVRWHINCNYIATGSS---DK-------TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR-YMAS 564 (704)
Q Consensus 503 -------~~~~~V~~v~~~p~~~~l~tgs~---dg-------~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~-~l~s 564 (704)
...+.-.-+++|+..+.|++.-. +| .|.++|+.+++.+..+.. ..++.+|+.+.+.+ +|++
T Consensus 228 ~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~ 306 (342)
T PF06433_consen 228 DAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYA 306 (342)
T ss_dssp HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEE
T ss_pred ccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEE
Confidence 01123455788887766666321 22 388899999999988863 34677999999776 5654
Q ss_pred E-eCCCeEEEEeCCCCeeeeeecC
Q 005277 565 G-DEDGTIMMWDLASGRCVTPLMG 587 (704)
Q Consensus 565 g-~~dg~I~iwdl~~~~~~~~~~~ 587 (704)
. ..++.+.+||..+|+.+.++..
T Consensus 307 ~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 307 LSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EETTTTEEEEEETTT--EEEEE--
T ss_pred EcCCCCeEEEEeCcCCcEEeehhc
Confidence 4 4689999999999999988864
No 372
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.04 E-value=0.047 Score=62.00 Aligned_cols=217 Identities=15% Similarity=0.180 Sum_probs=113.1
Q ss_pred CCEEEEEeCC------CeEEEEeCCCCceeEEeec-CCcCeeEEEEcCCCCEEEEEeCC------CeEEEEECCCCceeE
Q 005277 433 GDFILSSSAD------TTIRLWSTKLNANLVCYKG-HNYPVWDVQFNPQGHYFASSSHD------RTARIWSMDRIQPLR 499 (704)
Q Consensus 433 ~~~l~s~s~D------g~I~lwd~~~~~~~~~~~~-h~~~V~~v~~sp~~~~l~sgs~d------g~i~lwd~~~~~~~~ 499 (704)
+..++.|+.+ ..+..+|..++.-...... +...-.+++.. ++..+++||.| .++-.||.++.+-..
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~ 363 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP 363 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceec
Confidence 3445555555 3577888776633222111 22223334443 56788899988 356677777655322
Q ss_pred E--eccCCCCeeEEEEcCCCCEEEEEECCCc-----EEEEeCCCCcEEEEeecCCCCEEEEE-EecCCCEEEEEeCCC--
Q 005277 500 I--MAGHLSDVDCVRWHINCNYIATGSSDKT-----VRLWDVSSGECVRIFIGHRSMILSLA-MSPDGRYMASGDEDG-- 569 (704)
Q Consensus 500 ~--~~~~~~~V~~v~~~p~~~~l~tgs~dg~-----I~iwd~~~~~~~~~~~~h~~~i~~l~-~spdg~~l~sg~~dg-- 569 (704)
. +........... -+|.+.++|+.||. |-.||..+.+--..- .......+.+ ..-+|+..++||.++
T Consensus 364 ~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va-~m~~~r~~~gv~~~~g~iYi~GG~~~~~ 440 (571)
T KOG4441|consen 364 VAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA-PMLTRRSGHGVAVLGGKLYIIGGGDGSS 440 (571)
T ss_pred cCCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCCcccccC-CCCcceeeeEEEEECCEEEEEcCcCCCc
Confidence 1 111111111122 26778889998864 777887765432211 1111222222 222788888888654
Q ss_pred ----eEEEEeCCCCee--eeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeC
Q 005277 570 ----TIMMWDLASGRC--VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSA 643 (704)
Q Consensus 570 ----~I~iwdl~~~~~--~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~ 643 (704)
.+..||..+... +..+..-....... .-++.+.+.||.
T Consensus 441 ~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a------------------------------------~~~~~iYvvGG~ 484 (571)
T KOG4441|consen 441 NCLNSVECYDPETNTWTLIAPMNTRRSGFGVA------------------------------------VLNGKIYVVGGF 484 (571)
T ss_pred cccceEEEEcCCCCceeecCCcccccccceEE------------------------------------EECCEEEEECCc
Confidence 466777766532 22222111111111 346778888888
Q ss_pred CCc-----EEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCCC
Q 005277 644 DCT-----VKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKTS 704 (704)
Q Consensus 644 Dg~-----V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt~ 704 (704)
||. |..||..+.+ +..+..+....+.+..+. -++.+.|+|++||++
T Consensus 485 ~~~~~~~~VE~ydp~~~~-------------W~~v~~m~~~rs~~g~~~--~~~~ly~vGG~~~~~ 535 (571)
T KOG4441|consen 485 DGTSALSSVERYDPETNQ-------------WTMVAPMTSPRSAVGVVV--LGGKLYAVGGFDGNN 535 (571)
T ss_pred cCCCccceEEEEcCCCCc-------------eeEcccCccccccccEEE--ECCEEEEEecccCcc
Confidence 773 5666665532 333433433333333222 367888999998863
No 373
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.01 E-value=0.89 Score=52.64 Aligned_cols=273 Identities=17% Similarity=0.188 Sum_probs=143.4
Q ss_pred CCCEEEEEEcCC------CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeecc--CCcc
Q 005277 351 HNGLNCASISQD------GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ--GHSG 422 (704)
Q Consensus 351 ~~~V~~~~fs~d------g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~ 422 (704)
...|.|+.++|- .+++|+|..+..+.+.-........ ....+. .-..
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~-------------------------~~~~l~~~~iPR 584 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILI-------------------------THEQLSGEIIPR 584 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCccee-------------------------eeeccCCCccch
Confidence 456999999973 2389999887776655443211100 000011 1123
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEeCCC--CceeEEe--ecCCcCeeEEEEcCCCC----------------------
Q 005277 423 PVYSASFSPLGDFILSSSADTTIRLWSTKL--NANLVCY--KGHNYPVWDVQFNPQGH---------------------- 476 (704)
Q Consensus 423 ~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~--~~~~~~~--~~h~~~V~~v~~sp~~~---------------------- 476 (704)
.|.-..|-.|..+|+++..||.+.-+.++. +..-..- .-...|+.--.|+..+.
T Consensus 585 SIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~ 664 (1096)
T KOG1897|consen 585 SILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVY 664 (1096)
T ss_pred heeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEE
Confidence 455566666688999999999988775543 2211000 00122222222222111
Q ss_pred ---------------------EEEEEeCCCeEEEEECCCCce--eEEeccCCCCeeEEEEcCCCCEEEEEECC-------
Q 005277 477 ---------------------YFASSSHDRTARIWSMDRIQP--LRIMAGHLSDVDCVRWHINCNYIATGSSD------- 526 (704)
Q Consensus 477 ---------------------~l~sgs~dg~i~lwd~~~~~~--~~~~~~~~~~V~~v~~~p~~~~l~tgs~d------- 526 (704)
.++++ ..+.+++..++..+. +++.. -......+++++....+++.+..
T Consensus 665 spls~kev~~~c~f~s~a~~d~l~~~-~~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~~sl~~~v~s~r~e~~~~~ 742 (1096)
T KOG1897|consen 665 SPLSLKEVNHMCPFNSDAYPDSLASA-NGGALTIGTIDEIQKLHIRTVP-LGESPRRICYQESSLTFGVLSNRIESSAEY 742 (1096)
T ss_pred eccchHHhhhhcccccccCCceEEEe-cCCceEEEEecchhhcceeeec-CCCChhheEecccceEEEEEecccccchhh
Confidence 12222 234455554443322 22222 22445667777755555544321
Q ss_pred -------CcEEEEeCCCCcEEEEeec-CC---CCEEEEEEecC-CCEEEEEe----------CCCeEEEEeCCCCeeeee
Q 005277 527 -------KTVRLWDVSSGECVRIFIG-HR---SMILSLAMSPD-GRYMASGD----------EDGTIMMWDLASGRCVTP 584 (704)
Q Consensus 527 -------g~I~iwd~~~~~~~~~~~~-h~---~~i~~l~~spd-g~~l~sg~----------~dg~I~iwdl~~~~~~~~ 584 (704)
..++++|-.+.+.+....- .. -.|.++.|..| +.++++|. ..|.|.++....++.+..
T Consensus 743 ~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~ 822 (1096)
T KOG1897|consen 743 YGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLEL 822 (1096)
T ss_pred cCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceee
Confidence 1356666555544332211 01 13555568777 67777775 247788887766444433
Q ss_pred ecCC--CceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccc
Q 005277 585 LMGH--TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTE 662 (704)
Q Consensus 585 ~~~h--~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~ 662 (704)
...+ .+.+.++. --+|+++|.-+ ..|++|+..+.+.
T Consensus 823 v~e~~v~Gav~aL~-----------------------------------~fngkllA~In--~~vrLye~t~~~e----- 860 (1096)
T KOG1897|consen 823 VAETVVKGAVYALV-----------------------------------EFNGKLLAGIN--QSVRLYEWTTERE----- 860 (1096)
T ss_pred eeeeeeccceeehh-----------------------------------hhCCeEEEecC--cEEEEEEccccce-----
Confidence 3222 24444443 23677776654 5899999988643
Q ss_pred cccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277 663 EKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 702 (704)
Q Consensus 663 ~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg 702 (704)
+..-..+..++..+...-.|..+++|...+
T Consensus 861 ----------Lr~e~~~~~~~~aL~l~v~gdeI~VgDlm~ 890 (1096)
T KOG1897|consen 861 ----------LRIECNISNPIIALDLQVKGDEIAVGDLMR 890 (1096)
T ss_pred ----------ehhhhcccCCeEEEEEEecCcEEEEeeccc
Confidence 223334566777777777777777776543
No 374
>PHA02713 hypothetical protein; Provisional
Probab=96.98 E-value=0.049 Score=61.92 Aligned_cols=184 Identities=10% Similarity=0.048 Sum_probs=92.1
Q ss_pred CCCEEEEEeCC------CeEEEEeCCCCcee--EEeecCCcCeeEEEEcCCCCEEEEEeCCC-----eEEEEECCCCcee
Q 005277 432 LGDFILSSSAD------TTIRLWSTKLNANL--VCYKGHNYPVWDVQFNPQGHYFASSSHDR-----TARIWSMDRIQPL 498 (704)
Q Consensus 432 ~~~~l~s~s~D------g~I~lwd~~~~~~~--~~~~~h~~~V~~v~~sp~~~~l~sgs~dg-----~i~lwd~~~~~~~ 498 (704)
++...+.|+.+ .++..||..+..-. ..+.........+.+ +|+..+.||.++ ++..||..+.+-.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 45555666643 34677887665321 111111111112222 678888888654 4778888765322
Q ss_pred E--EeccCCCCeeEEEEcCCCCEEEEEECCC-----------------------cEEEEeCCCCcEEEEeecCCCCEEEE
Q 005277 499 R--IMAGHLSDVDCVRWHINCNYIATGSSDK-----------------------TVRLWDVSSGECVRIFIGHRSMILSL 553 (704)
Q Consensus 499 ~--~~~~~~~~V~~v~~~p~~~~l~tgs~dg-----------------------~I~iwd~~~~~~~~~~~~h~~~i~~l 553 (704)
. .+.........+. -++.+.+.|+.++ .+..||..+.+-...-.-.......-
T Consensus 381 ~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~ 458 (557)
T PHA02713 381 MLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPG 458 (557)
T ss_pred ECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCc
Confidence 2 1111111112222 2577777777542 47778877664322111111111111
Q ss_pred EEecCCCEEEEEeCCC------eEEEEeCCC-C--eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeee
Q 005277 554 AMSPDGRYMASGDEDG------TIMMWDLAS-G--RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLT 624 (704)
Q Consensus 554 ~~spdg~~l~sg~~dg------~I~iwdl~~-~--~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (704)
+..-+|+..+.||.++ .+..||..+ . ..+..+..........
T Consensus 459 ~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~----------------------------- 509 (557)
T PHA02713 459 VVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTI----------------------------- 509 (557)
T ss_pred EEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeE-----------------------------
Confidence 2223677777776542 356788765 3 2333332222211111
Q ss_pred EEeecccCCCCCEEEEEeCCC--cEEEEeCCCC
Q 005277 625 IIYFGCASCEGSLLASGSADC--TVKLWDVTTS 655 (704)
Q Consensus 625 ~~~~~~~s~~g~~lasgs~Dg--~V~iWd~~~~ 655 (704)
.-+|.+.++||.|| ++..||..+.
T Consensus 510 -------~~~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 510 -------LHDNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred -------EECCEEEEEeeecceeehhhcCcccc
Confidence 34678889999888 6777777664
No 375
>PHA02713 hypothetical protein; Provisional
Probab=96.96 E-value=0.059 Score=61.30 Aligned_cols=92 Identities=9% Similarity=0.043 Sum_probs=45.7
Q ss_pred CCCEEEEEeCC------CeEEEEECCCCceeEE--eccCCCCeeEEEEcCCCCEEEEEECCC-----cEEEEeCCCCcEE
Q 005277 474 QGHYFASSSHD------RTARIWSMDRIQPLRI--MAGHLSDVDCVRWHINCNYIATGSSDK-----TVRLWDVSSGECV 540 (704)
Q Consensus 474 ~~~~l~sgs~d------g~i~lwd~~~~~~~~~--~~~~~~~V~~v~~~p~~~~l~tgs~dg-----~I~iwd~~~~~~~ 540 (704)
++..++.||.+ ..+..||..+..-... +.........+. -++.+.+.|+.++ ++..||..+..-.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~--~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV--IDDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE--ECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 56667777643 3466778766532211 111111111222 3567777887654 4788998776432
Q ss_pred EE--eecCCCCEEEEEEecCCCEEEEEeCCC
Q 005277 541 RI--FIGHRSMILSLAMSPDGRYMASGDEDG 569 (704)
Q Consensus 541 ~~--~~~h~~~i~~l~~spdg~~l~sg~~dg 569 (704)
.. +.........+ .-+|+..+.||.++
T Consensus 381 ~~~~mp~~r~~~~~~--~~~g~IYviGG~~~ 409 (557)
T PHA02713 381 MLPDMPIALSSYGMC--VLDQYIYIIGGRTE 409 (557)
T ss_pred ECCCCCcccccccEE--EECCEEEEEeCCCc
Confidence 21 11111111122 22677777787653
No 376
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.93 E-value=0.0025 Score=42.20 Aligned_cols=38 Identities=45% Similarity=0.786 Sum_probs=33.8
Q ss_pred ceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEE
Q 005277 454 ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS 491 (704)
Q Consensus 454 ~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd 491 (704)
.....+..|...|+++.|.+.+.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45566778889999999999999999999999999996
No 377
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.88 E-value=0.019 Score=66.27 Aligned_cols=133 Identities=18% Similarity=0.190 Sum_probs=96.4
Q ss_pred eCCCeEEEEECCCCceeEEeccCCCC-eeEEEEcCC-------CCEEEEEECCCcEEEEeCCCC--cEEEEe---ecCCC
Q 005277 482 SHDRTARIWSMDRIQPLRIMAGHLSD-VDCVRWHIN-------CNYIATGSSDKTVRLWDVSSG--ECVRIF---IGHRS 548 (704)
Q Consensus 482 s~dg~i~lwd~~~~~~~~~~~~~~~~-V~~v~~~p~-------~~~l~tgs~dg~I~iwd~~~~--~~~~~~---~~h~~ 548 (704)
.....++-.|+++++.+..+..+... |..++ |+ ..-.++|-.+..+..||.|-. +++... .....
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~--p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~ 578 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIA--PDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKN 578 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEec--ccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCC
Confidence 45688999999999999998877643 54443 43 345677888999999999853 233211 12345
Q ss_pred CEEEEEEecCCCEEEEEeCCCeEEEEeCCCCee-eeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEe
Q 005277 549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGRC-VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIY 627 (704)
Q Consensus 549 ~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~-~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (704)
..+|++-+.+| +||+|+.+|.|++||- .|+. -..+.+-..+|..+..
T Consensus 579 ~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDv------------------------------ 626 (794)
T PF08553_consen 579 NFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDV------------------------------ 626 (794)
T ss_pred CceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEe------------------------------
Confidence 67888888777 6899999999999994 4433 3345667889999988
Q ss_pred ecccCCCCCEEEEEeCCCcEEEEeCC
Q 005277 628 FGCASCEGSLLASGSADCTVKLWDVT 653 (704)
Q Consensus 628 ~~~~s~~g~~lasgs~Dg~V~iWd~~ 653 (704)
+.||++|++.+. ..+.+++..
T Consensus 627 ----t~DGkwilaTc~-tyLlLi~t~ 647 (794)
T PF08553_consen 627 ----TADGKWILATCK-TYLLLIDTL 647 (794)
T ss_pred ----cCCCcEEEEeec-ceEEEEEEe
Confidence 999999876664 577777764
No 378
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.82 E-value=0.0013 Score=62.84 Aligned_cols=142 Identities=17% Similarity=0.136 Sum_probs=85.2
Q ss_pred EEEEeCCCeEEEEECCCCcee-EEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC-CcEEEEeecCCCCEEEE-E
Q 005277 478 FASSSHDRTARIWSMDRIQPL-RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-GECVRIFIGHRSMILSL-A 554 (704)
Q Consensus 478 l~sgs~dg~i~lwd~~~~~~~-~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~-~~~~~~~~~h~~~i~~l-~ 554 (704)
+..-+.||.|+-++++..+.. +.-.-+.... ....-+..+++|+.+|.|.+|...- |.....+..-...|.++ .
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~---~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip 109 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEGQ---RVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP 109 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcce---eecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence 344456788877777643221 1111111111 1112356789999999999998762 11111122222233332 2
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCC-ceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCC
Q 005277 555 MSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT-SCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASC 633 (704)
Q Consensus 555 ~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~-~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 633 (704)
-..++.+..+++.||.|+.|++.-++.+.....|. .++..... +.
T Consensus 110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~iv----------------------------------v~ 155 (238)
T KOG2444|consen 110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIV----------------------------------VG 155 (238)
T ss_pred cccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEE----------------------------------ec
Confidence 23356688899999999999999888887777776 44443333 45
Q ss_pred CCCEEEEE--eCCCcEEEEeCCCCc
Q 005277 634 EGSLLASG--SADCTVKLWDVTTST 656 (704)
Q Consensus 634 ~g~~lasg--s~Dg~V~iWd~~~~~ 656 (704)
.+.+++.+ |.|..++.|++..-.
T Consensus 156 sd~~i~~a~~S~d~~~k~W~ve~~~ 180 (238)
T KOG2444|consen 156 SDEFLKIADTSHDRVLKKWNVEKIK 180 (238)
T ss_pred CCceEEeeccccchhhhhcchhhhh
Confidence 56677777 788888888887543
No 379
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=96.79 E-value=0.0023 Score=42.33 Aligned_cols=31 Identities=23% Similarity=0.431 Sum_probs=28.1
Q ss_pred chHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Q 005277 2 DELQVVEFVATYLKKKGFSEAENALQAEIQR 32 (704)
Q Consensus 2 ~~~~~~~~v~~yl~~~~~~~~~~~~~~e~~~ 32 (704)
...+++++|++||.+.||..|..+|.+|+..
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~ 32 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGL 32 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCC
Confidence 4578999999999999999999999999764
No 380
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.78 E-value=0.62 Score=52.58 Aligned_cols=99 Identities=8% Similarity=0.032 Sum_probs=64.7
Q ss_pred CCeEEEEeCCCCceeEEeecC-------------------------------CcCee-EEEEcCCCCEEEEEeCC-----
Q 005277 442 DTTIRLWSTKLNANLVCYKGH-------------------------------NYPVW-DVQFNPQGHYFASSSHD----- 484 (704)
Q Consensus 442 Dg~I~lwd~~~~~~~~~~~~h-------------------------------~~~V~-~v~~sp~~~~l~sgs~d----- 484 (704)
+|.|..+|..+++.+..+..- ...+| .+++.|...+++.+..+
T Consensus 180 ~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~ 259 (527)
T TIGR03075 180 RGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWN 259 (527)
T ss_pred CcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCC
Confidence 678888898888877654321 11233 24666666666655421
Q ss_pred C-----------eEEEEECCCCceeEEeccCCCCeeE---------EEEcCCCC---EEEEEECCCcEEEEeCCCCcEE
Q 005277 485 R-----------TARIWSMDRIQPLRIMAGHLSDVDC---------VRWHINCN---YIATGSSDKTVRLWDVSSGECV 540 (704)
Q Consensus 485 g-----------~i~lwd~~~~~~~~~~~~~~~~V~~---------v~~~p~~~---~l~tgs~dg~I~iwd~~~~~~~ 540 (704)
+ .|.-.|+++++....++....++.. +....+|+ .++.+..+|.+++.|.++|+.+
T Consensus 260 ~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 260 SHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred CCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 2 6777788899888777643332221 22224665 7788999999999999999886
No 381
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.75 E-value=0.3 Score=57.13 Aligned_cols=111 Identities=12% Similarity=0.089 Sum_probs=74.1
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEeecCCcC--------eeEEEEcC----------------CCCEEEEEeCCCeEE
Q 005277 433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYP--------VWDVQFNP----------------QGHYFASSSHDRTAR 488 (704)
Q Consensus 433 ~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~--------V~~v~~sp----------------~~~~l~sgs~dg~i~ 488 (704)
+..|+.++.++.|.-.|..+++.+..+...... ...+.+.. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 556777788888999999999888877643211 12233321 234788888999999
Q ss_pred EEECCCCceeEEeccCCCCee-------------EEEEcC--CCCEEEEEEC----------CCcEEEEeCCCCcEEEEe
Q 005277 489 IWSMDRIQPLRIMAGHLSDVD-------------CVRWHI--NCNYIATGSS----------DKTVRLWDVSSGECVRIF 543 (704)
Q Consensus 489 lwd~~~~~~~~~~~~~~~~V~-------------~v~~~p--~~~~l~tgs~----------dg~I~iwd~~~~~~~~~~ 543 (704)
-.|.++++.+..+.. .+.|. .+.-.| .+..+++|+. +|.|+-+|.++|+.+..+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999998877642 22211 111112 2346666643 688999999999998876
Q ss_pred e
Q 005277 544 I 544 (704)
Q Consensus 544 ~ 544 (704)
.
T Consensus 353 ~ 353 (764)
T TIGR03074 353 D 353 (764)
T ss_pred e
Confidence 4
No 382
>PRK10115 protease 2; Provisional
Probab=96.69 E-value=2 Score=50.30 Aligned_cols=190 Identities=9% Similarity=0.064 Sum_probs=99.9
Q ss_pred CEEEEEEcCCCCEEEEEeCC-----CcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEE
Q 005277 353 GLNCASISQDGSLVAGGFSD-----SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA 427 (704)
Q Consensus 353 ~V~~~~fs~dg~~lasg~~d-----g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 427 (704)
.+..+.|||||++||.+.+. -.|++-|+.++.. ....+. +.-..+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~---------------------------l~~~i~---~~~~~~ 177 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNW---------------------------YPELLD---NVEPSF 177 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCC---------------------------CCcccc---CcceEE
Confidence 36778899999999987553 2366666653110 000011 111468
Q ss_pred EEcCCCCEEEEEeCC------CeEEEEeCCCC--ceeEEeecCCcCee-EEEEcCCCCEEEEEe---CCCeEEEEECC--
Q 005277 428 SFSPLGDFILSSSAD------TTIRLWSTKLN--ANLVCYKGHNYPVW-DVQFNPQGHYFASSS---HDRTARIWSMD-- 493 (704)
Q Consensus 428 ~~sp~~~~l~s~s~D------g~I~lwd~~~~--~~~~~~~~h~~~V~-~v~~sp~~~~l~sgs---~dg~i~lwd~~-- 493 (704)
+|++|++.|+-+..+ ..|..|++.++ +....+.......+ .+..+.++++++..+ .++.+.+|+.+
T Consensus 178 ~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~ 257 (686)
T PRK10115 178 VWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELA 257 (686)
T ss_pred EEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCC
Confidence 999999876644332 36788888887 44445554444444 333344787766554 34578888853
Q ss_pred CCceeEEeccCCCCeeEEEEcCCCCEEEEEEC----CCcEEEEeCC-CCcEEEEeecC-C-CCEEEEEEecCCCEEEEEe
Q 005277 494 RIQPLRIMAGHLSDVDCVRWHINCNYIATGSS----DKTVRLWDVS-SGECVRIFIGH-R-SMILSLAMSPDGRYMASGD 566 (704)
Q Consensus 494 ~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~----dg~I~iwd~~-~~~~~~~~~~h-~-~~i~~l~~spdg~~l~sg~ 566 (704)
.+.+...+. +...+..-..+.. ..+..-+. ...|...++. .++. ..+..+ . ..|..+.++ .+.++++..
T Consensus 258 ~~~~~~~~~-~~~~~~~~~~~~~-~~ly~~tn~~~~~~~l~~~~~~~~~~~-~~l~~~~~~~~i~~~~~~-~~~l~~~~~ 333 (686)
T PRK10115 258 DAEPFVFLP-RRKDHEYSLDHYQ-HRFYLRSNRHGKNFGLYRTRVRDEQQW-EELIPPRENIMLEGFTLF-TDWLVVEER 333 (686)
T ss_pred CCCceEEEE-CCCCCEEEEEeCC-CEEEEEEcCCCCCceEEEecCCCcccC-eEEECCCCCCEEEEEEEE-CCEEEEEEE
Confidence 333322222 2222222122333 33333322 2234444554 2322 233344 3 368888887 335556666
Q ss_pred CCCeEEEEeC
Q 005277 567 EDGTIMMWDL 576 (704)
Q Consensus 567 ~dg~I~iwdl 576 (704)
.+|.-+++-+
T Consensus 334 ~~g~~~l~~~ 343 (686)
T PRK10115 334 QRGLTSLRQI 343 (686)
T ss_pred eCCEEEEEEE
Confidence 6776555543
No 383
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.63 E-value=0.93 Score=48.43 Aligned_cols=234 Identities=11% Similarity=0.065 Sum_probs=106.6
Q ss_pred CCCEEEEEe-CCCeEEEEeCCCC----ceeEEeec---CC----cCeeEEEEcCCCCEEEEEe------CCCeEEEEECC
Q 005277 432 LGDFILSSS-ADTTIRLWSTKLN----ANLVCYKG---HN----YPVWDVQFNPQGHYFASSS------HDRTARIWSMD 493 (704)
Q Consensus 432 ~~~~l~s~s-~Dg~I~lwd~~~~----~~~~~~~~---h~----~~V~~v~~sp~~~~l~sgs------~dg~i~lwd~~ 493 (704)
+.++|+..+ ..+.|.|.|+.+. +..+++.. +. ..-..+..-|+|..++++- .-|.+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456777665 6788999998843 23333332 10 1223345567898888863 33568888888
Q ss_pred CCceeEEeccCCC---CeeEEEEcCCCCEEEEEEC--------------------CCcEEEEeCCCCcEEEEeecCCC--
Q 005277 494 RIQPLRIMAGHLS---DVDCVRWHINCNYIATGSS--------------------DKTVRLWDVSSGECVRIFIGHRS-- 548 (704)
Q Consensus 494 ~~~~~~~~~~~~~---~V~~v~~~p~~~~l~tgs~--------------------dg~I~iwd~~~~~~~~~~~~h~~-- 548 (704)
+.+.......... --..+-|+|..+.+++... ..++.+||+.+.+.++++.-...
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 8777766653222 2345778899999988652 35799999999999988864332
Q ss_pred CEEEEEEecCC--CE-EEEEeCCCeEEEEeC-CCCe----eeeeecCC-----------------Cceeeeeeeeeeehc
Q 005277 549 MILSLAMSPDG--RY-MASGDEDGTIMMWDL-ASGR----CVTPLMGH-----------------TSCVWTLAYRFLLLV 603 (704)
Q Consensus 549 ~i~~l~~spdg--~~-l~sg~~dg~I~iwdl-~~~~----~~~~~~~h-----------------~~~V~sl~~~~~~~~ 603 (704)
....+.|..+. .+ ++.+.-.++|..|-- ..++ .+..+..- ..-|+.|..
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~i------ 319 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILI------ 319 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE------
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEE------
Confidence 35567776543 32 333334455555533 3332 12222110 011222222
Q ss_pred cccccccccccccceeeeeeeEEeecccCCCCCEEEEEe-CCCcEEEEeCCCCccccccccc--cCcc-cc-ccccccCC
Q 005277 604 TNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGS-ADCTVKLWDVTTSTKVLKTEEK--SGTN-RL-RSLKTLPT 678 (704)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs-~Dg~V~iWd~~~~~~~~~~~~~--~~~~-~~-~~l~~~~~ 678 (704)
|.|.++|.... .+|.|+.||+...........- .+.. .. .....-..
T Consensus 320 ----------------------------SlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~ 371 (461)
T PF05694_consen 320 ----------------------------SLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKR 371 (461)
T ss_dssp -----------------------------TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS----
T ss_pred ----------------------------ccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccc
Confidence 88888886555 7899999999987654332110 0000 00 00000011
Q ss_pred CCcCeEEEEEccCCcEEEEee
Q 005277 679 KSTPVYSLQFSRRNLLFAAGA 699 (704)
Q Consensus 679 ~~~~V~~l~fs~~g~~La~gs 699 (704)
..+...-|+.|.||+.|.+..
T Consensus 372 l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 372 LRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp --S----EEE-TTSSEEEEE-
T ss_pred cCCCCCeEEEccCCeEEEEEe
Confidence 233457788999998776543
No 384
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.61 E-value=0.03 Score=59.89 Aligned_cols=143 Identities=14% Similarity=0.175 Sum_probs=99.6
Q ss_pred CCCEEE-EEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCC-------EEEEEeCCCeEEEEECCCCce--eEEe
Q 005277 432 LGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-------YFASSSHDRTARIWSMDRIQP--LRIM 501 (704)
Q Consensus 432 ~~~~l~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~-------~l~sgs~dg~i~lwd~~~~~~--~~~~ 501 (704)
+.++|+ ++..-..++-.|++.|+.+...+-|.. |.-+.+.|+.+ .-+.|-.|..|.-||.+-... +...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 444444 555556688889999999998887765 77777887543 234566788999999874322 2222
Q ss_pred ccC----CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 005277 502 AGH----LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA 577 (704)
Q Consensus 502 ~~~----~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~ 577 (704)
.+| .....|.+-..+ .+|++||.+|.||+||--..+....+.+-..+|..+..+.+|++|++.+ +..+.+.++.
T Consensus 423 q~kqy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred eccccccccccceeeecCC-ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 222 234566665444 4899999999999999743344455778888999999999999987655 4566666653
No 385
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.61 E-value=0.022 Score=65.68 Aligned_cols=100 Identities=20% Similarity=0.286 Sum_probs=76.2
Q ss_pred CCEEEEEeCCCeEEEEeCCCCce-eEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEE
Q 005277 433 GDFILSSSADTTIRLWSTKLNAN-LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCV 511 (704)
Q Consensus 433 ~~~l~s~s~Dg~I~lwd~~~~~~-~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v 511 (704)
+..++.|+..|.|-..|+...-+ ...-..-.++|++++|+.+|..++.|-.+|.|.+||+.++++++.+..|..+.+.+
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV 178 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence 55688888888888888764311 12222346899999999999999999999999999999999999988887777766
Q ss_pred EEc---CCCCEEEEEECCCcEEEEeC
Q 005277 512 RWH---INCNYIATGSSDKTVRLWDV 534 (704)
Q Consensus 512 ~~~---p~~~~l~tgs~dg~I~iwd~ 534 (704)
-++ .++..+.++...|. +|.+
T Consensus 179 i~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 179 IFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEeCCCcEEEEccCCCc--eEEE
Confidence 544 34556777777776 5544
No 386
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.57 E-value=0.065 Score=57.39 Aligned_cols=137 Identities=15% Similarity=0.237 Sum_probs=90.9
Q ss_pred CCCEE-EEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCE-------EEEEeCCCeEEEEeCCCCe--eeeee
Q 005277 516 NCNYI-ATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRY-------MASGDEDGTIMMWDLASGR--CVTPL 585 (704)
Q Consensus 516 ~~~~l-~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~-------l~sg~~dg~I~iwdl~~~~--~~~~~ 585 (704)
+.++| .++.....++-.|+..|+.+..+.-+.. |+-+.+.|+++. -+.|-.|..|.-||.+-.. .+..-
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 34444 4466677899999999999999887766 777888886542 2346678889999987321 12222
Q ss_pred cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccccccccc
Q 005277 586 MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKS 665 (704)
Q Consensus 586 ~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~ 665 (704)
++|.- .+.-.| .+. . .....+||+||.+|.||+||- .+.
T Consensus 423 q~kqy-~~k~nF-----------------------sc~------a-TT~sG~IvvgS~~GdIRLYdr-i~~--------- 461 (644)
T KOG2395|consen 423 QSKQY-STKNNF-----------------------SCF------A-TTESGYIVVGSLKGDIRLYDR-IGR--------- 461 (644)
T ss_pred ecccc-cccccc-----------------------cee------e-ecCCceEEEeecCCcEEeehh-hhh---------
Confidence 22210 000001 000 0 334458999999999999997 322
Q ss_pred CccccccccccCCCCcCeEEEEEccCCcEEEEee
Q 005277 666 GTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 699 (704)
Q Consensus 666 ~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs 699 (704)
+.-..+|+...+|..|..+.+|.++.+.+
T Consensus 462 -----~AKTAlPgLG~~I~hVdvtadGKwil~Tc 490 (644)
T KOG2395|consen 462 -----RAKTALPGLGDAIKHVDVTADGKWILATC 490 (644)
T ss_pred -----hhhhcccccCCceeeEEeeccCcEEEEec
Confidence 12346889999999999999999877654
No 387
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.57 E-value=0.71 Score=48.80 Aligned_cols=139 Identities=14% Similarity=0.127 Sum_probs=77.0
Q ss_pred EEEcCCCCEEE-EEeCCCe--EEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc
Q 005277 427 ASFSPLGDFIL-SSSADTT--IRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG 503 (704)
Q Consensus 427 l~~sp~~~~l~-s~s~Dg~--I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~ 503 (704)
=+|.++|+.|+ ++..||. +.+.|+.+++..+--.+-........++|+++.++-...+..++-.|+++.+....+..
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~ 120 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV 120 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence 35778887655 4554555 55567777665554443223334677889888877666678899999999887777766
Q ss_pred CCCCeeEEEEc--CCCCEEEEEE---C-------------------CCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCC
Q 005277 504 HLSDVDCVRWH--INCNYIATGS---S-------------------DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG 559 (704)
Q Consensus 504 ~~~~V~~v~~~--p~~~~l~tgs---~-------------------dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg 559 (704)
...-+....|. .++..++-.- . ...|...|+.+|+....+. ....+..+.|||..
T Consensus 121 p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~d 199 (386)
T PF14583_consen 121 PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTD 199 (386)
T ss_dssp -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTE
T ss_pred CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCC
Confidence 66666556664 4565554321 1 1236666888887655553 55678899999966
Q ss_pred CEEEEEe
Q 005277 560 RYMASGD 566 (704)
Q Consensus 560 ~~l~sg~ 566 (704)
..+++-|
T Consensus 200 p~li~fC 206 (386)
T PF14583_consen 200 PTLIMFC 206 (386)
T ss_dssp EEEEEEE
T ss_pred CCEEEEe
Confidence 5555543
No 388
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.50 E-value=0.009 Score=68.70 Aligned_cols=101 Identities=15% Similarity=0.289 Sum_probs=77.1
Q ss_pred CCCEEEEEeCCCeEEEEECCCC-ceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEE
Q 005277 474 QGHYFASSSHDRTARIWSMDRI-QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILS 552 (704)
Q Consensus 474 ~~~~l~sgs~dg~i~lwd~~~~-~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~ 552 (704)
.+..++.|+..|.+-..|+... .+...-..-.++|++++|+.+|..++.|-.+|.|.+||+..++.++.+..|..+.++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 4567888888899988888653 222222234578999999999999999999999999999999999988877766555
Q ss_pred EE---EecCCCEEEEEeCCCeEEEEeC
Q 005277 553 LA---MSPDGRYMASGDEDGTIMMWDL 576 (704)
Q Consensus 553 l~---~spdg~~l~sg~~dg~I~iwdl 576 (704)
+- +..++..+.++...|. +|.+
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 44 4445667888877775 5554
No 389
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.49 E-value=0.31 Score=56.52 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=21.2
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCeEEE
Q 005277 421 SGPVYSASFSPLGDFILSSSADTTIRL 447 (704)
Q Consensus 421 ~~~V~~l~~sp~~~~l~s~s~Dg~I~l 447 (704)
.-.|..|.++|+|.+|+..|..|.+.+
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~ 110 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVL 110 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEE
Confidence 357889999999999998887664433
No 390
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.46 E-value=0.21 Score=42.84 Aligned_cols=100 Identities=17% Similarity=0.119 Sum_probs=67.7
Q ss_pred eEEEEEcC---CC-CEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeE
Q 005277 424 VYSASFSP---LG-DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR 499 (704)
Q Consensus 424 V~~l~~sp---~~-~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~ 499 (704)
|+++++.. +| +.|+.||.|..||+|+-+ ..+..+.. ...|+++.-... ..|+.+..+|+|.+|+-.. .+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--RLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--eee
Confidence 56666654 33 479999999999999864 45555654 456777776655 6799999999999997632 333
Q ss_pred EeccCCCCeeEEEEcC-CC---CEEEEEECCCcEE
Q 005277 500 IMAGHLSDVDCVRWHI-NC---NYIATGSSDKTVR 530 (704)
Q Consensus 500 ~~~~~~~~V~~v~~~p-~~---~~l~tgs~dg~I~ 530 (704)
..+ ....+.++.+.. ++ ..|++|-.+|.|-
T Consensus 76 RiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 333 233466665543 32 4788888888774
No 391
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.45 E-value=1.6 Score=46.24 Aligned_cols=237 Identities=17% Similarity=0.149 Sum_probs=116.6
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCC-
Q 005277 354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL- 432 (704)
Q Consensus 354 V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~- 432 (704)
-++|+|.|||+++++ ...|.|++++........... ..............++++|+
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~~----------------------~~~v~~~~~~gllgia~~p~f 60 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVAD----------------------LPEVFADGERGLLGIAFHPDF 60 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEETTTEECEEEEE-----------------------TTTBTSTTBSEEEEEE-TTC
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEeCCCcCcceecc----------------------cccccccccCCcccceecccc
Confidence 578999999987765 569999999833211000000 00112334567899999994
Q ss_pred --CCEEEEEeC-C--------CeEEEEeCCCC-------ceeE-Eeec---CCcCeeEEEEcCCCCEEEEEeCCC-----
Q 005277 433 --GDFILSSSA-D--------TTIRLWSTKLN-------ANLV-CYKG---HNYPVWDVQFNPQGHYFASSSHDR----- 485 (704)
Q Consensus 433 --~~~l~s~s~-D--------g~I~lwd~~~~-------~~~~-~~~~---h~~~V~~v~~sp~~~~l~sgs~dg----- 485 (704)
+.+|..... . ..|.-|..... +.+. .+.. ....-..|.|.|+|.++++.+..+
T Consensus 61 ~~n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~ 140 (331)
T PF07995_consen 61 ASNGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNA 140 (331)
T ss_dssp CCC-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGG
T ss_pred CCCCEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccc
Confidence 334443322 1 23444444333 1111 1122 233456799999997766665332
Q ss_pred --------eEEEEECCCCc------------eeEEeccCCCCeeEEEEcCC-CCEEEE-EECCCcEEEEeCCCC------
Q 005277 486 --------TARIWSMDRIQ------------PLRIMAGHLSDVDCVRWHIN-CNYIAT-GSSDKTVRLWDVSSG------ 537 (704)
Q Consensus 486 --------~i~lwd~~~~~------------~~~~~~~~~~~V~~v~~~p~-~~~l~t-gs~dg~I~iwd~~~~------ 537 (704)
.|.-.+.+..- ....+.........++|+|. |.+.++ .+.++.=.|--+..|
T Consensus 141 ~~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP 220 (331)
T PF07995_consen 141 QDPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWP 220 (331)
T ss_dssp CSTTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TT
T ss_pred cccccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCC
Confidence 23223322110 01111111223457899998 555443 123332233222221
Q ss_pred -----------------------cEEEEeecCCCCEEEEEEec-------CCCEEEEEeCCCeEEEEeCCCCeeee---e
Q 005277 538 -----------------------ECVRIFIGHRSMILSLAMSP-------DGRYMASGDEDGTIMMWDLASGRCVT---P 584 (704)
Q Consensus 538 -----------------------~~~~~~~~h~~~i~~l~~sp-------dg~~l~sg~~dg~I~iwdl~~~~~~~---~ 584 (704)
.++..+..| ..+..+.|-. .|.++++.-..+.|....+..+..+. .
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 299 (331)
T PF07995_consen 221 YCEGGPKYSGPPIGDAPSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEE 299 (331)
T ss_dssp TBSSSCSTTSS-ECTGSS-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEE
T ss_pred CCcCCCCCCCCccccccCCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEE
Confidence 122333333 5566777764 45566666666777777776443221 1
Q ss_pred -ecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEE
Q 005277 585 -LMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVK 648 (704)
Q Consensus 585 -~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~ 648 (704)
+......+..+.+ .|||.++++-+.+|.|.
T Consensus 300 ~~~~~~~r~~~v~~----------------------------------~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 300 FLGGFGGRPRDVAQ----------------------------------GPDGALYVSDDSDGKIY 330 (331)
T ss_dssp ECTTSSS-EEEEEE----------------------------------ETTSEEEEEE-TTTTEE
T ss_pred ccccCCCCceEEEE----------------------------------cCCCeEEEEECCCCeEe
Confidence 1233346667776 88998888888888764
No 392
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.42 E-value=0.26 Score=42.25 Aligned_cols=100 Identities=16% Similarity=0.179 Sum_probs=68.4
Q ss_pred eeEEEEcC---CC-CEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEE
Q 005277 466 VWDVQFNP---QG-HYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVR 541 (704)
Q Consensus 466 V~~v~~sp---~~-~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~ 541 (704)
|+++++.. +| +.|++||.|..|++|+-+ ..+..+. -.+.|.+++-... ..++.+..+|+|.+|+- ...+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence 56666655 22 579999999999999865 3555555 3466777776554 67999999999999985 22333
Q ss_pred EeecCCCCEEEEEEec-C--C-CEEEEEeCCCeEE
Q 005277 542 IFIGHRSMILSLAMSP-D--G-RYMASGDEDGTIM 572 (704)
Q Consensus 542 ~~~~h~~~i~~l~~sp-d--g-~~l~sg~~dg~I~ 572 (704)
..+ .+..++++++.. + | .-|++|-.+|.|-
T Consensus 76 RiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 333 334466666654 3 2 3688898888774
No 393
>PHA03098 kelch-like protein; Provisional
Probab=96.41 E-value=0.14 Score=58.28 Aligned_cols=146 Identities=12% Similarity=0.034 Sum_probs=68.2
Q ss_pred CCCEEEEEeCCC------eEEEEeCCCCceeEE--eecCCcCeeEEEEcCCCCEEEEEeCC-----CeEEEEECCCCcee
Q 005277 432 LGDFILSSSADT------TIRLWSTKLNANLVC--YKGHNYPVWDVQFNPQGHYFASSSHD-----RTARIWSMDRIQPL 498 (704)
Q Consensus 432 ~~~~l~s~s~Dg------~I~lwd~~~~~~~~~--~~~h~~~V~~v~~sp~~~~l~sgs~d-----g~i~lwd~~~~~~~ 498 (704)
++..++.|+.++ .+..||..+.+-... +.........+.+ ++..++.||.+ ..+..||..+.+-.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 345555665432 467777765543221 1111111222222 67778888765 34667887664422
Q ss_pred EEecc-CCCCeeEEEEcCCCCEEEEEECC------CcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCC--
Q 005277 499 RIMAG-HLSDVDCVRWHINCNYIATGSSD------KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG-- 569 (704)
Q Consensus 499 ~~~~~-~~~~V~~v~~~p~~~~l~tgs~d------g~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg-- 569 (704)
..-.. +...-.+++ .-++.+.+.|+.+ ..+..||..+++-...-..........+...++...+.||.++
T Consensus 372 ~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~ 450 (534)
T PHA03098 372 EEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYID 450 (534)
T ss_pred eCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCC
Confidence 21110 001111122 2356666777632 4588899877643221110001001112223566666666432
Q ss_pred ------eEEEEeCCCCe
Q 005277 570 ------TIMMWDLASGR 580 (704)
Q Consensus 570 ------~I~iwdl~~~~ 580 (704)
.+.+||..+.+
T Consensus 451 ~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 451 NIKVYNIVESYNPVTNK 467 (534)
T ss_pred CCcccceEEEecCCCCc
Confidence 37777876654
No 394
>PRK10115 protease 2; Provisional
Probab=96.39 E-value=2 Score=50.24 Aligned_cols=111 Identities=8% Similarity=-0.019 Sum_probs=68.8
Q ss_pred cCeEEEEEcCCCCEEEEE-----eCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCC------CeEEEE
Q 005277 422 GPVYSASFSPLGDFILSS-----SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD------RTARIW 490 (704)
Q Consensus 422 ~~V~~l~~sp~~~~l~s~-----s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~d------g~i~lw 490 (704)
-.+..+.|+|++++|+.+ +...+|++.|+.++..+...-.... ..++|.++++.|+....+ ..|..+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 456788999999988744 2234588889987764322211211 459999998877665432 367778
Q ss_pred ECCCC--ceeEEeccCCCCeeEEEEcC-CCCEEEEEEC---CCcEEEEeC
Q 005277 491 SMDRI--QPLRIMAGHLSDVDCVRWHI-NCNYIATGSS---DKTVRLWDV 534 (704)
Q Consensus 491 d~~~~--~~~~~~~~~~~~V~~v~~~p-~~~~l~tgs~---dg~I~iwd~ 534 (704)
++.+. +-...+...........+.+ ++.+++..+. ++.+.+|+.
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 88776 34445554333333223334 7887766543 457888885
No 395
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.38 E-value=0.62 Score=46.49 Aligned_cols=157 Identities=13% Similarity=0.157 Sum_probs=91.9
Q ss_pred EEcCCCCEEEEEeCC-----CeEEEEeCCCC-ceeEEeecCCcCeeEEEEcCCCCEEEEEeCC-----------------
Q 005277 428 SFSPLGDFILSSSAD-----TTIRLWSTKLN-ANLVCYKGHNYPVWDVQFNPQGHYFASSSHD----------------- 484 (704)
Q Consensus 428 ~~sp~~~~l~s~s~D-----g~I~lwd~~~~-~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~d----------------- 484 (704)
.|||||.+|+..-.| |.|-|||.+.+ +.+..+..|.-.-..+.|.+||+.++.+...
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsM 199 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSM 199 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhc
Confidence 589999999876443 78999998754 4566777887778899999999999887420
Q ss_pred -CeEEEEECCCCceeEEe--c--cCCCCeeEEEEcCCCCEEEEEECCCc-----EEEEeCCCCcEEEEee-------cCC
Q 005277 485 -RTARIWSMDRIQPLRIM--A--GHLSDVDCVRWHINCNYIATGSSDKT-----VRLWDVSSGECVRIFI-------GHR 547 (704)
Q Consensus 485 -g~i~lwd~~~~~~~~~~--~--~~~~~V~~v~~~p~~~~l~tgs~dg~-----I~iwd~~~~~~~~~~~-------~h~ 547 (704)
-++.+.|..++..+... . .+.-.|..++..++|...+.+-..|. -.+=-.+.|+.+..+. ...
T Consensus 200 ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~a 279 (366)
T COG3490 200 EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFA 279 (366)
T ss_pred CccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHH
Confidence 11222232233222211 1 12334666666666655444322211 1111112333333221 123
Q ss_pred CCEEEEEEecCCCEEEEEe-CCCeEEEEeCCCCeeeee
Q 005277 548 SMILSLAMSPDGRYMASGD-EDGTIMMWDLASGRCVTP 584 (704)
Q Consensus 548 ~~i~~l~~spdg~~l~sg~-~dg~I~iwdl~~~~~~~~ 584 (704)
..|-+++.+.+..+++..+ ..+...+||..+|..+..
T Consensus 280 nYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~ 317 (366)
T COG3490 280 NYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSE 317 (366)
T ss_pred hhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEec
Confidence 4577888887666665555 455678999999987654
No 396
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.35 E-value=0.52 Score=53.19 Aligned_cols=199 Identities=13% Similarity=0.031 Sum_probs=118.4
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEeecCC-cCee----------EEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe
Q 005277 433 GDFILSSSADTTIRLWSTKLNANLVCYKGHN-YPVW----------DVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM 501 (704)
Q Consensus 433 ~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~-~~V~----------~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~ 501 (704)
+..++.++.++.|.-.|..+++.+..+.... ..+. .+++ .+..++.++.|+.+.-.|.++++.+...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4567777778899999999999887765321 1111 1122 2346777888999999999999988765
Q ss_pred ccCCCC-eeEEEEcC--CCCEEEEEEC------CCcEEEEeCCCCcEEEEeecCCC------------------------
Q 005277 502 AGHLSD-VDCVRWHI--NCNYIATGSS------DKTVRLWDVSSGECVRIFIGHRS------------------------ 548 (704)
Q Consensus 502 ~~~~~~-V~~v~~~p--~~~~l~tgs~------dg~I~iwd~~~~~~~~~~~~h~~------------------------ 548 (704)
...... -..+.-+| .+..+++++. +|.|.-+|..+|+.+..+..-..
T Consensus 147 ~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~ 226 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGD 226 (527)
T ss_pred ccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCC
Confidence 421110 00111112 1335555542 68999999999998876532110
Q ss_pred --------CEEEEEEecCCCEEEEEeCC-----C-----------eEEEEeCCCCeeeeeecCCCceeeeeeeeeeehcc
Q 005277 549 --------MILSLAMSPDGRYMASGDED-----G-----------TIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVT 604 (704)
Q Consensus 549 --------~i~~l~~spdg~~l~sg~~d-----g-----------~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~ 604 (704)
.-..+++.|...+++.+... + .|.-.|+++|+..-.++.....++......
T Consensus 227 ~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~----- 301 (527)
T TIGR03075 227 AWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVN----- 301 (527)
T ss_pred ccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCC-----
Confidence 01134566655566655422 1 566667777877766654333344332200
Q ss_pred ccccccccccccceeeeeeeEEeecccCCCCC---EEEEEeCCCcEEEEeCCCCccc
Q 005277 605 NAYLKISDKVSTGFLFYSLTIIYFGCASCEGS---LLASGSADCTVKLWDVTTSTKV 658 (704)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~---~lasgs~Dg~V~iWd~~~~~~~ 658 (704)
.....-...+|+ .++.++.+|.+.+.|-.+++.+
T Consensus 302 --------------------~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 302 --------------------EMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred --------------------CcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 000000023554 7889999999999999998765
No 397
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.34 E-value=0.012 Score=56.40 Aligned_cols=105 Identities=17% Similarity=0.187 Sum_probs=70.5
Q ss_pred CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE-EEEEcCCCCEEEEEeC
Q 005277 363 GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY-SASFSPLGDFILSSSA 441 (704)
Q Consensus 363 g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~l~~sp~~~~l~s~s~ 441 (704)
+.-+++|+.+|.|.+|++...+... .....-...|. .+.-..++.+.++++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~---------------------------d~~~s~~e~i~~~Ip~~~~~~~~c~~~~ 122 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHS---------------------------DRVCSGEESIDLGIPNGRDSSLGCVGAQ 122 (238)
T ss_pred CceEEeecccceEEEecCCccchHH---------------------------HhhhcccccceeccccccccceeEEecc
Confidence 4568999999999999987321110 11111112222 2223334557889999
Q ss_pred CCeEEEEeCCCCceeEEeecCC-cCeeEEEEcCCCCEEEEE--eCCCeEEEEECCC
Q 005277 442 DTTIRLWSTKLNANLVCYKGHN-YPVWDVQFNPQGHYFASS--SHDRTARIWSMDR 494 (704)
Q Consensus 442 Dg~I~lwd~~~~~~~~~~~~h~-~~V~~v~~sp~~~~l~sg--s~dg~i~lwd~~~ 494 (704)
||.|+.|++..++.+.....|+ .++.....+..+..++++ |.|..++.|++..
T Consensus 123 dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 123 DGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 9999999999888887777777 566666666666777777 7777777787764
No 398
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.32 E-value=0.35 Score=54.96 Aligned_cols=148 Identities=15% Similarity=0.157 Sum_probs=76.9
Q ss_pred EEEEcCCCCEEEEEeCC------CeEEEEeCCCCceeE--EeecCCcCeeEEEEcCCCCEEEEEeCCCe-----EEEEEC
Q 005277 426 SASFSPLGDFILSSSAD------TTIRLWSTKLNANLV--CYKGHNYPVWDVQFNPQGHYFASSSHDRT-----ARIWSM 492 (704)
Q Consensus 426 ~l~~sp~~~~l~s~s~D------g~I~lwd~~~~~~~~--~~~~h~~~V~~v~~sp~~~~l~sgs~dg~-----i~lwd~ 492 (704)
+++.. ++...++|+.| .++..||..+.+-.. .+...........+ +|...|+||.||. +-.||.
T Consensus 327 ~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp 403 (571)
T KOG4441|consen 327 GVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDP 403 (571)
T ss_pred cEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecC
Confidence 44444 34566788887 356677776654222 11111111111112 7888999998865 555666
Q ss_pred CCCce--eEEeccCCCCeeEEEEcCCCCEEEEEECCC------cEEEEeCCCCcEEEEe--ecCCCCEEEEEEecCCCEE
Q 005277 493 DRIQP--LRIMAGHLSDVDCVRWHINCNYIATGSSDK------TVRLWDVSSGECVRIF--IGHRSMILSLAMSPDGRYM 562 (704)
Q Consensus 493 ~~~~~--~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg------~I~iwd~~~~~~~~~~--~~h~~~i~~l~~spdg~~l 562 (704)
.+.+- +..+......+..+. -+|.+.++|+.++ ++..||..++.-...- ........ ++ .-++...
T Consensus 404 ~~~~W~~va~m~~~r~~~gv~~--~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a-~~~~~iY 479 (571)
T KOG4441|consen 404 VTNKWTPVAPMLTRRSGHGVAV--LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VA-VLNGKIY 479 (571)
T ss_pred CCCcccccCCCCcceeeeEEEE--ECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EE-EECCEEE
Confidence 55332 111111111122222 3677778887554 4678888776543221 11111111 22 2267888
Q ss_pred EEEeCCCe-----EEEEeCCCCe
Q 005277 563 ASGDEDGT-----IMMWDLASGR 580 (704)
Q Consensus 563 ~sg~~dg~-----I~iwdl~~~~ 580 (704)
+.||.||. |..||..+.+
T Consensus 480 vvGG~~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 480 VVGGFDGTSALSSVERYDPETNQ 502 (571)
T ss_pred EECCccCCCccceEEEEcCCCCc
Confidence 88887762 6667776544
No 399
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.28 E-value=0.13 Score=56.17 Aligned_cols=149 Identities=15% Similarity=0.208 Sum_probs=91.2
Q ss_pred ccCeEEEEEcCCCCEEE-EEe--CCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCC----CCEEEEEeCCCeEEEEECC
Q 005277 421 SGPVYSASFSPLGDFIL-SSS--ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ----GHYFASSSHDRTARIWSMD 493 (704)
Q Consensus 421 ~~~V~~l~~sp~~~~l~-s~s--~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~----~~~l~sgs~dg~i~lwd~~ 493 (704)
-.+|.+++|. ||+.++ +.- .+|.+++=|. ..+ |.-..|..+.|.|- -..+...-+...|.+|-+.
T Consensus 19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---KVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred hccccceEec-CCCEEEEEeeeeeCCccccCCc---cEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 3589999998 565444 432 3344433221 122 23346889999994 3345556678999999875
Q ss_pred -----CCceeEEeccC---CCC--eeEEEEcCCCCEEEEEECCCcEEEEeCCC-CcEEEEeecCCCCEEEEEEecCCCEE
Q 005277 494 -----RIQPLRIMAGH---LSD--VDCVRWHINCNYIATGSSDKTVRLWDVSS-GECVRIFIGHRSMILSLAMSPDGRYM 562 (704)
Q Consensus 494 -----~~~~~~~~~~~---~~~--V~~v~~~p~~~~l~tgs~dg~I~iwd~~~-~~~~~~~~~h~~~i~~l~~spdg~~l 562 (704)
+.+.+..-..+ .-+ -..+.|||....|++-.....-.+++++. +..+..-....+.|.|.+|.+||+.|
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RL 170 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRL 170 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEE
Confidence 22222221111 111 24578999999998876665555677763 33343333567889999999999988
Q ss_pred EEEeC-CCeEEEEeCC
Q 005277 563 ASGDE-DGTIMMWDLA 577 (704)
Q Consensus 563 ~sg~~-dg~I~iwdl~ 577 (704)
+++-. .=.-+|||-.
T Consensus 171 VVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 171 VVAVGSSLHSYIWDSA 186 (671)
T ss_pred EEEeCCeEEEEEecCc
Confidence 76543 3346788743
No 400
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.13 E-value=2.4 Score=45.83 Aligned_cols=82 Identities=18% Similarity=0.290 Sum_probs=60.0
Q ss_pred CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEE-EEEecC-----------------CCEE-EEEe
Q 005277 506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILS-LAMSPD-----------------GRYM-ASGD 566 (704)
Q Consensus 506 ~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~-l~~spd-----------------g~~l-~sg~ 566 (704)
..+.+++.+|++++.|+...=|.|.++|+.++..++.++|-.+.=.. +..... ..+| +-+-
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap 387 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP 387 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence 45778999999999999888899999999999999988876553111 111001 1123 3456
Q ss_pred CCCeEEEEeCCCCeeeeeecC
Q 005277 567 EDGTIMMWDLASGRCVTPLMG 587 (704)
Q Consensus 567 ~dg~I~iwdl~~~~~~~~~~~ 587 (704)
.-|.|-||.+++|..+..+..
T Consensus 388 rRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 388 RRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred cCCeEEEEecCCCCEEEEEEe
Confidence 789999999999998887753
No 401
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.95 E-value=1.7 Score=43.79 Aligned_cols=118 Identities=14% Similarity=0.207 Sum_probs=89.1
Q ss_pred ecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc-CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCc
Q 005277 460 KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG-HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE 538 (704)
Q Consensus 460 ~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~-~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~ 538 (704)
.+-...+.++.|+|+.+.+++........+|=...+..++.+.- ...+...+.+..+++++++--.++.+.++.+..+.
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 34455699999999999988888888888887778888887752 23556778888888888888888999888776542
Q ss_pred EEEEe---------ecC-CCCEEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 005277 539 CVRIF---------IGH-RSMILSLAMSPDGRYMASGDEDGTIMMWDLA 577 (704)
Q Consensus 539 ~~~~~---------~~h-~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~ 577 (704)
.+... ..+ +...-.++|+|....|..+-+-.-+.||...
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence 22111 122 4567889999999989888888878777765
No 402
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.91 E-value=0.66 Score=46.64 Aligned_cols=166 Identities=11% Similarity=0.170 Sum_probs=115.1
Q ss_pred CCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecC-CcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 005277 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH-NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP 497 (704)
Q Consensus 419 ~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h-~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~ 497 (704)
|-...|.++.|+|+.+.|++......-.||=...|+.+.++.-. -...-.|.+..+|.+.++--.++.+.++.++....
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence 44456999999999999998888888878777778888776531 22344688888888888877899999988875432
Q ss_pred eEEe----------ccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCc-E--EEEeecCC-------CCEEEEEEec
Q 005277 498 LRIM----------AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE-C--VRIFIGHR-------SMILSLAMSP 557 (704)
Q Consensus 498 ~~~~----------~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~-~--~~~~~~h~-------~~i~~l~~sp 557 (704)
+... .........++|.|....|+.+-...-+.||.+..+. . +.....+. ..|+++.|.+
T Consensus 163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~ 242 (316)
T COG3204 163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNA 242 (316)
T ss_pred EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecC
Confidence 2211 1224567889999999999998888888888775332 1 11111111 2467788887
Q ss_pred -CCCEEEEEeCCCeEEEEeCCCCeeeeee
Q 005277 558 -DGRYMASGDEDGTIMMWDLASGRCVTPL 585 (704)
Q Consensus 558 -dg~~l~sg~~dg~I~iwdl~~~~~~~~~ 585 (704)
.+..|+-+.+++.+.-.|.. |.++..+
T Consensus 243 ~~~~LLVLS~ESr~l~Evd~~-G~~~~~l 270 (316)
T COG3204 243 ITNSLLVLSDESRRLLEVDLS-GEVIELL 270 (316)
T ss_pred CCCcEEEEecCCceEEEEecC-CCeeeeE
Confidence 46677778888888888854 4444444
No 403
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.89 E-value=5 Score=46.86 Aligned_cols=183 Identities=9% Similarity=0.145 Sum_probs=113.8
Q ss_pred EEEEEeCCCeEEEEeCCCCce--eEEeecCCcCeeEEEEcCCCCEEEEEeCC--------------CeEEEEECCCCcee
Q 005277 435 FILSSSADTTIRLWSTKLNAN--LVCYKGHNYPVWDVQFNPQGHYFASSSHD--------------RTARIWSMDRIQPL 498 (704)
Q Consensus 435 ~l~s~s~Dg~I~lwd~~~~~~--~~~~~~h~~~V~~v~~sp~~~~l~sgs~d--------------g~i~lwd~~~~~~~ 498 (704)
.|+++.. +.+++--++.-+. +++.. -..+...+++.+....+++.+.. ..++++|-++.+.+
T Consensus 686 ~l~~~~~-~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl 763 (1096)
T KOG1897|consen 686 SLASANG-GALTIGTIDEIQKLHIRTVP-LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVL 763 (1096)
T ss_pred eEEEecC-CceEEEEecchhhcceeeec-CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEE
Confidence 4555554 4577766654332 23333 23456677787755555554421 23566666665544
Q ss_pred EEeccC----CCCeeEEEEcCC-CCEEEEEE----------CCCcEEEEeCCCCcEEEEeecC--CCCEEEEEEecCCCE
Q 005277 499 RIMAGH----LSDVDCVRWHIN-CNYIATGS----------SDKTVRLWDVSSGECVRIFIGH--RSMILSLAMSPDGRY 561 (704)
Q Consensus 499 ~~~~~~----~~~V~~v~~~p~-~~~l~tgs----------~dg~I~iwd~~~~~~~~~~~~h--~~~i~~l~~spdg~~ 561 (704)
....-. .-.+.++.|+.+ +.++++|+ ..|.|.++.+..++.+.....+ .+.+.++..- +|++
T Consensus 764 ~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkl 842 (1096)
T KOG1897|consen 764 SSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKL 842 (1096)
T ss_pred eeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeE
Confidence 332211 123555668776 77888876 3477888887775545444332 3445444432 6777
Q ss_pred EEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEE
Q 005277 562 MASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASG 641 (704)
Q Consensus 562 l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasg 641 (704)
||.- ...|++|++.+.+.++.-..|..++..+.. ...|..+++|
T Consensus 843 lA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l----------------------------------~v~gdeI~Vg 886 (1096)
T KOG1897|consen 843 LAGI--NQSVRLYEWTTERELRIECNISNPIIALDL----------------------------------QVKGDEIAVG 886 (1096)
T ss_pred EEec--CcEEEEEEccccceehhhhcccCCeEEEEE----------------------------------EecCcEEEEe
Confidence 7644 558999999999887777778888888877 6788999999
Q ss_pred eCCCcEEEEeCCCCc
Q 005277 642 SADCTVKLWDVTTST 656 (704)
Q Consensus 642 s~Dg~V~iWd~~~~~ 656 (704)
..-+++.+......+
T Consensus 887 Dlm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 887 DLMRSITLLQYKGDE 901 (1096)
T ss_pred eccceEEEEEEeccC
Confidence 988888877766544
No 404
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.85 E-value=0.61 Score=47.24 Aligned_cols=153 Identities=17% Similarity=0.129 Sum_probs=93.9
Q ss_pred CeeEEEEcCCCCEEEEEE---CCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEe-CCCCeee
Q 005277 507 DVDCVRWHINCNYIATGS---SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD-LASGRCV 582 (704)
Q Consensus 507 ~V~~v~~~p~~~~l~tgs---~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwd-l~~~~~~ 582 (704)
.+...+++++++.++... ....++++. .+....... ....++.-.|+++|...+....+...+++. ..++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688899999999887655 333455554 333333321 223788889999988777767666667763 3333221
Q ss_pred -eeecC--CCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEe---CCCcEEEEeCCCCc
Q 005277 583 -TPLMG--HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGS---ADCTVKLWDVTTST 656 (704)
Q Consensus 583 -~~~~~--h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs---~Dg~V~iWd~~~~~ 656 (704)
..... -.+.|.++.+ ||||..+|... .++.|.|=-+....
T Consensus 102 ~~~v~~~~~~~~I~~l~v----------------------------------SpDG~RvA~v~~~~~~~~v~va~V~r~~ 147 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRV----------------------------------SPDGTRVAVVVEDGGGGRVYVAGVVRDG 147 (253)
T ss_pred eEEecccccCCceEEEEE----------------------------------CCCCcEEEEEEecCCCCeEEEEEEEeCC
Confidence 11111 1127888888 99999887665 45778887665433
Q ss_pred cccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277 657 KVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 702 (704)
Q Consensus 657 ~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg 702 (704)
.-. .......+.........+..+.|.+++.+++.+...+
T Consensus 148 ~g~------~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 148 DGV------PRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred CCC------cceeccceEecccccCcceeeeecCCCEEEEEeCCCC
Confidence 210 0000011222334467899999999999888876654
No 405
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.78 E-value=2.4 Score=45.39 Aligned_cols=151 Identities=16% Similarity=0.198 Sum_probs=78.0
Q ss_pred EcCCCCEEEEEe------CCCeEEEEeCCCCceeEEeecC---CcCeeEEEEcCCCCEEEEEeC----------------
Q 005277 429 FSPLGDFILSSS------ADTTIRLWSTKLNANLVCYKGH---NYPVWDVQFNPQGHYFASSSH---------------- 483 (704)
Q Consensus 429 ~sp~~~~l~s~s------~Dg~I~lwd~~~~~~~~~~~~h---~~~V~~v~~sp~~~~l~sgs~---------------- 483 (704)
.-|+|+.++|+- .-|-+.+.|-++.......... ..--.++-|.|..+.++|...
T Consensus 137 clp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~ 216 (461)
T PF05694_consen 137 CLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLE 216 (461)
T ss_dssp E-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHH
T ss_pred ecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhh
Confidence 346888888752 2256888888877776665532 233467888888888888642
Q ss_pred ----CCeEEEEECCCCceeEEeccCCC--CeeEEEEc--CCCCEEEEEE-CCCcEEEEeC-CCCc----EEEEeec----
Q 005277 484 ----DRTARIWSMDRIQPLRIMAGHLS--DVDCVRWH--INCNYIATGS-SDKTVRLWDV-SSGE----CVRIFIG---- 545 (704)
Q Consensus 484 ----dg~i~lwd~~~~~~~~~~~~~~~--~V~~v~~~--p~~~~l~tgs-~dg~I~iwd~-~~~~----~~~~~~~---- 545 (704)
..++.+||+.+.+.++.+.-... ....|.|. |+..+=++|+ -.++|..|-- ..+. .+-.+..
T Consensus 217 ~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~ 296 (461)
T PF05694_consen 217 AGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVE 296 (461)
T ss_dssp HH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--
T ss_pred cccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccC
Confidence 47899999999999998874332 34567775 4455555544 3444544433 3332 1111111
Q ss_pred -C------------CCCEEEEEEecCCCEEEEEe-CCCeEEEEeCCCC
Q 005277 546 -H------------RSMILSLAMSPDGRYMASGD-EDGTIMMWDLASG 579 (704)
Q Consensus 546 -h------------~~~i~~l~~spdg~~l~sg~-~dg~I~iwdl~~~ 579 (704)
- ..-|+.|.+|.|.++|...+ .+|.|+.||+...
T Consensus 297 ~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 297 GWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred cccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 0 24579999999999988765 7899999999764
No 406
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.67 E-value=1.6 Score=43.75 Aligned_cols=196 Identities=13% Similarity=0.065 Sum_probs=108.5
Q ss_pred CeeEEEEcCCCCEEEEEeCCC--eEEEEECCCCceeEEeccCC-CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEE
Q 005277 465 PVWDVQFNPQGHYFASSSHDR--TARIWSMDRIQPLRIMAGHL-SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVR 541 (704)
Q Consensus 465 ~V~~v~~sp~~~~l~sgs~dg--~i~lwd~~~~~~~~~~~~~~-~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~ 541 (704)
-...+.|..+|.++-+.+.-| .|+.+|+.+++......-.. ---..++... +......-.++...+||..+.+.+.
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEEEEETTTTEEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEEEEccccceEEE
Confidence 345688877888888887655 78999999988776544221 1123344432 2333334478899999999999888
Q ss_pred EeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCC--Cceeee---eeeeeeehcccccccccccccc
Q 005277 542 IFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH--TSCVWT---LAYRFLLLVTNAYLKISDKVST 616 (704)
Q Consensus 542 ~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h--~~~V~s---l~~~~~~~~~~~~~~~~~~~~~ 616 (704)
.+.-. +.=..++ .||..|+.......|+++|..+.+....+... ..+|.. +.|
T Consensus 125 ~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~------------------- 182 (264)
T PF05096_consen 125 TFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEY------------------- 182 (264)
T ss_dssp EEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEE-------------------
T ss_pred EEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEE-------------------
Confidence 87533 3334555 47888888888889999999888776665432 223322 333
Q ss_pred ceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccC-CcEE
Q 005277 617 GFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRR-NLLF 695 (704)
Q Consensus 617 ~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~-g~~L 695 (704)
-+|.+.|-.=....|..-|..++.....+.-..-......-........-.+.++|.|. +.++
T Consensus 183 ----------------i~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~ 246 (264)
T PF05096_consen 183 ----------------INGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLF 246 (264)
T ss_dssp ----------------ETTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEE
T ss_pred ----------------EcCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEE
Confidence 14444454445556666676666654333211000000000001112456789999875 5666
Q ss_pred EEee
Q 005277 696 AAGA 699 (704)
Q Consensus 696 a~gs 699 (704)
++|-
T Consensus 247 vTGK 250 (264)
T PF05096_consen 247 VTGK 250 (264)
T ss_dssp EEET
T ss_pred EEeC
Confidence 6663
No 407
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.67 E-value=2.7 Score=42.19 Aligned_cols=158 Identities=11% Similarity=0.057 Sum_probs=100.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCC--eEEEEeCCCCceeEEeecC-CcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeE
Q 005277 423 PVYSASFSPLGDFILSSSADT--TIRLWSTKLNANLVCYKGH-NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR 499 (704)
Q Consensus 423 ~V~~l~~sp~~~~l~s~s~Dg--~I~lwd~~~~~~~~~~~~h-~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~ 499 (704)
-..++.|..++.++-|.+.-| .|+.+|+.+++......-. ..---.++.. +++.+.-.=.++.+.+||.++.+.+.
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEE
Confidence 345788877787777887766 6899999999876554422 1112233333 22333333467899999999998888
Q ss_pred EeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCC-----CCEEEEEEecCCCEEEEEeCCCeEEEE
Q 005277 500 IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-----SMILSLAMSPDGRYMASGDEDGTIMMW 574 (704)
Q Consensus 500 ~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-----~~i~~l~~spdg~~l~sg~~dg~I~iw 574 (704)
.+. ..+.=..++ .+++.|+.......++.+|..+.+..+.+.... ..++-+.|- +|...|=.=....|...
T Consensus 125 ~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~I 200 (264)
T PF05096_consen 125 TFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRI 200 (264)
T ss_dssp EEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred EEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEE
Confidence 876 334556666 567777777777789999998887776654322 245667776 67666656667788888
Q ss_pred eCCCCeeeeee
Q 005277 575 DLASGRCVTPL 585 (704)
Q Consensus 575 dl~~~~~~~~~ 585 (704)
|..+|+.+..+
T Consensus 201 dp~tG~V~~~i 211 (264)
T PF05096_consen 201 DPETGKVVGWI 211 (264)
T ss_dssp ETTT-BEEEEE
T ss_pred eCCCCeEEEEE
Confidence 99999877655
No 408
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.59 E-value=0.035 Score=39.77 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=29.0
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 005277 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMA 381 (704)
Q Consensus 350 ~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~ 381 (704)
....|.+++|+|...+||.|+.+|.|.|+.++
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 34569999999999999999999999999985
No 409
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.57 E-value=1 Score=45.00 Aligned_cols=101 Identities=14% Similarity=0.176 Sum_probs=68.8
Q ss_pred eeEEEEcCC-CCEEEEEeCCCe-EEEEECCCCceeEEeccCCCC--eeEEEEcCCCCEEEEEEC-----CCcEEEEeCCC
Q 005277 466 VWDVQFNPQ-GHYFASSSHDRT-ARIWSMDRIQPLRIMAGHLSD--VDCVRWHINCNYIATGSS-----DKTVRLWDVSS 536 (704)
Q Consensus 466 V~~v~~sp~-~~~l~sgs~dg~-i~lwd~~~~~~~~~~~~~~~~--V~~v~~~p~~~~l~tgs~-----dg~I~iwd~~~ 536 (704)
...|.|+|. ..-++.+-.-|+ ..++|....+....+....+. .-.-.|||+|.+|...-. .|.|-+||.+.
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence 335777774 444555555454 567888776655444322211 112368999999987543 37899999985
Q ss_pred C-cEEEEeecCCCCEEEEEEecCCCEEEEEe
Q 005277 537 G-ECVRIFIGHRSMILSLAMSPDGRYMASGD 566 (704)
Q Consensus 537 ~-~~~~~~~~h~~~i~~l~~spdg~~l~sg~ 566 (704)
+ +.+..+..|.-....+.|.+||+.|+.+.
T Consensus 150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred ccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 4 45667778888889999999999998764
No 410
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.47 E-value=2.7 Score=40.86 Aligned_cols=133 Identities=12% Similarity=0.224 Sum_probs=85.1
Q ss_pred CcCeeEEEEcCCCCEEEEEeC---------CCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEE-EECCCcEEEE
Q 005277 463 NYPVWDVQFNPQGHYFASSSH---------DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIAT-GSSDKTVRLW 532 (704)
Q Consensus 463 ~~~V~~v~~sp~~~~l~sgs~---------dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~t-gs~dg~I~iw 532 (704)
.....+-..+|+|++++-.-. .|.++.|-... .+..+.....--+.++|+.+.+.+.. -+.+-+|.-|
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h--~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH--QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccCC--CceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence 345667778999998543222 24444444322 22222222233457889877766654 5567778778
Q ss_pred e--CCCCcE-----EEEeec----CCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeee
Q 005277 533 D--VSSGEC-----VRIFIG----HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY 597 (704)
Q Consensus 533 d--~~~~~~-----~~~~~~----h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~ 597 (704)
| ..+|.. +..+.. ..-..-.+++..+|++.++.-..|+|...|..+|+.+..+.-....|++++|
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccF 261 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCF 261 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEe
Confidence 7 555532 222221 0111234566668888888889999999999999999999888889999988
No 411
>PHA03098 kelch-like protein; Provisional
Probab=95.47 E-value=0.47 Score=53.92 Aligned_cols=64 Identities=13% Similarity=0.094 Sum_probs=33.5
Q ss_pred CCCEEEEEECC-----CcEEEEeCCCCcEEEEeec-CCCCEEEEEEecCCCEEEEEeCC------CeEEEEeCCCCe
Q 005277 516 NCNYIATGSSD-----KTVRLWDVSSGECVRIFIG-HRSMILSLAMSPDGRYMASGDED------GTIMMWDLASGR 580 (704)
Q Consensus 516 ~~~~l~tgs~d-----g~I~iwd~~~~~~~~~~~~-h~~~i~~l~~spdg~~l~sg~~d------g~I~iwdl~~~~ 580 (704)
++.+++.|+.+ ..+..||..+++-...-.- +...-.+++ .-+++..+.||.+ ..+..||+.+.+
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~ 417 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNK 417 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence 56677777755 3477888876643221110 111111122 2356767777632 357788876653
No 412
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.29 E-value=1.4 Score=49.79 Aligned_cols=159 Identities=13% Similarity=0.164 Sum_probs=85.2
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEe----ecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 005277 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY----KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP 497 (704)
Q Consensus 422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~----~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~ 497 (704)
+.+..+.|+.+. .|++...+|++++|++. |..+..+ ......|..+.+..+|- ++-..+|.+.+-.-.....
T Consensus 84 ~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~GV--avlt~~g~v~~i~~~~~~~ 159 (829)
T KOG2280|consen 84 GELIGMGWSDDE-ELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNGV--AVLTVSGQVILINGVEEPK 159 (829)
T ss_pred CCeeeecccCCc-eEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCce--EEEecCCcEEEEcCCCcch
Confidence 478899999655 47777899999999987 3333221 22233455555554553 3333445555443222212
Q ss_pred eEEecc-CCCCeeEEEEc--CCC---CEEEEEE-CCCcEEEEeC--CCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCC
Q 005277 498 LRIMAG-HLSDVDCVRWH--INC---NYIATGS-SDKTVRLWDV--SSGECVRIFIGHRSMILSLAMSPDGRYMASGDED 568 (704)
Q Consensus 498 ~~~~~~-~~~~V~~v~~~--p~~---~~l~tgs-~dg~I~iwd~--~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~d 568 (704)
++.+.. ......+.+|. +++ ..++--. ..+ ..++.. .+.+... +......+..+..||++++|+--..+
T Consensus 160 ~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~-~~~~~~~~~ki~VS~n~~~laLyt~~ 237 (829)
T KOG2280|consen 160 LRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHA-LSWPNSSVVKISVSPNRRFLALYTET 237 (829)
T ss_pred hhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccc-cCCCCceEEEEEEcCCcceEEEEecC
Confidence 222221 11222222332 221 1111110 000 011111 1222222 22223568889999999999999999
Q ss_pred CeEEEEeCCCCeeeeeec
Q 005277 569 GTIMMWDLASGRCVTPLM 586 (704)
Q Consensus 569 g~I~iwdl~~~~~~~~~~ 586 (704)
|.|.+-+....++...+.
T Consensus 238 G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 238 GKIWVVSIDLSQILCEFN 255 (829)
T ss_pred CcEEEEecchhhhhhccC
Confidence 999999988877776665
No 413
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.25 E-value=6 Score=46.57 Aligned_cols=153 Identities=12% Similarity=0.156 Sum_probs=96.6
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCe-------------eEEEEcC--CCCEEEEEeC----------CCe
Q 005277 432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPV-------------WDVQFNP--QGHYFASSSH----------DRT 486 (704)
Q Consensus 432 ~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V-------------~~v~~sp--~~~~l~sgs~----------dg~ 486 (704)
++..++.++.|+.+.-.|..+++.+..+.. .+.| ..+.-.| .+..+++|+. +|.
T Consensus 259 ~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~ 337 (764)
T TIGR03074 259 CARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGV 337 (764)
T ss_pred cCCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcE
Confidence 345788888999999999999998877642 2111 0112222 2445666643 688
Q ss_pred EEEEECCCCceeEEeccC---------C--------CCe-eEEEEcCCCCEEEEEE------------------CCCcEE
Q 005277 487 ARIWSMDRIQPLRIMAGH---------L--------SDV-DCVRWHINCNYIATGS------------------SDKTVR 530 (704)
Q Consensus 487 i~lwd~~~~~~~~~~~~~---------~--------~~V-~~v~~~p~~~~l~tgs------------------~dg~I~ 530 (704)
|+-+|.++++.+..+..- . ..+ ..+++.|....++.+. ..++|.
T Consensus 338 I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slv 417 (764)
T TIGR03074 338 IRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLV 417 (764)
T ss_pred EEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEE
Confidence 999999999888765421 0 011 2344555544544422 124577
Q ss_pred EEeCCCCcEEEEeec-CCC--------CEEEEEEec-CCC---EEEEEeCCCeEEEEeCCCCeeeeee
Q 005277 531 LWDVSSGECVRIFIG-HRS--------MILSLAMSP-DGR---YMASGDEDGTIMMWDLASGRCVTPL 585 (704)
Q Consensus 531 iwd~~~~~~~~~~~~-h~~--------~i~~l~~sp-dg~---~l~sg~~dg~I~iwdl~~~~~~~~~ 585 (704)
-.|..+|+....++. |.+ ...-+.+.. +|+ .++.++.+|.+.++|.++|+.+...
T Consensus 418 ALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 418 ALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred EEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 778889998887754 211 111222333 563 7899999999999999999887654
No 414
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.19 E-value=4.1 Score=41.23 Aligned_cols=130 Identities=20% Similarity=0.173 Sum_probs=79.1
Q ss_pred CeeEEEEcCCCCEEEEEe---CCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEe-CCCCcE-
Q 005277 465 PVWDVQFNPQGHYFASSS---HDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWD-VSSGEC- 539 (704)
Q Consensus 465 ~V~~v~~sp~~~~l~sgs---~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd-~~~~~~- 539 (704)
.+.+.++++++..++... ....+.++... ....... ....+..-+|++++...+....+...+++. ..++..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999998876665 33445555443 3333322 223778889999977777666666677773 333332
Q ss_pred -EEEeecCC-CCEEEEEEecCCCEEEEEe---CCCeEEEEeCC---CC------eeeeeecCCCceeeeeee
Q 005277 540 -VRIFIGHR-SMILSLAMSPDGRYMASGD---EDGTIMMWDLA---SG------RCVTPLMGHTSCVWTLAY 597 (704)
Q Consensus 540 -~~~~~~h~-~~i~~l~~spdg~~l~sg~---~dg~I~iwdl~---~~------~~~~~~~~h~~~V~sl~~ 597 (704)
+..-.... +.|+.+.+||||..++... .++.|.+=-+. .+ ..+.........+.++.|
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W 173 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAW 173 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeee
Confidence 22211111 2899999999999877654 45777776443 22 111222233467889999
No 415
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.11 E-value=4.9 Score=41.65 Aligned_cols=273 Identities=15% Similarity=0.117 Sum_probs=121.6
Q ss_pred eeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEE
Q 005277 348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA 427 (704)
Q Consensus 348 ~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 427 (704)
.+....+..+.|..+..-+|+|. .|.| +.....+..-.. ........-.-..++|
T Consensus 13 l~t~~~l~dV~F~d~~~G~~VG~-~g~i--l~T~DGG~tW~~----------------------~~~~~~~~~~~~l~~I 67 (302)
T PF14870_consen 13 LPTDKPLLDVAFVDPNHGWAVGA-YGTI--LKTTDGGKTWQP----------------------VSLDLDNPFDYHLNSI 67 (302)
T ss_dssp -S-SS-EEEEEESSSS-EEEEET-TTEE--EEESSTTSS-EE---------------------------S-----EEEEE
T ss_pred cCCCCceEEEEEecCCEEEEEec-CCEE--EEECCCCccccc----------------------cccCCCccceeeEEEE
Confidence 34556789999997677777774 4543 333321110000 0000000001235677
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee---cCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCce-eEEecc
Q 005277 428 SFSPLGDFILSSSADTTIRLWSTKLNANLVCYK---GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP-LRIMAG 503 (704)
Q Consensus 428 ~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~---~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~-~~~~~~ 503 (704)
.|..+ ..+++ +..+ +.+...+.++.-..+. .-.+....+....++...+ ++..|.|.. ..+.++. ......
T Consensus 68 ~f~~~-~g~iv-G~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~iy~-T~DgG~tW~~~~~~ 142 (302)
T PF14870_consen 68 SFDGN-EGWIV-GEPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAIYR-TTDGGKTWQAVVSE 142 (302)
T ss_dssp EEETT-EEEEE-EETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--EEE-ESSTTSSEEEEE-S
T ss_pred EecCC-ceEEE-cCCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcEEE-eCCCCCCeeEcccC
Confidence 77643 33444 4445 4455555454433322 1122233444443443333 334444322 2233332 223344
Q ss_pred CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCC-CCeee
Q 005277 504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA-SGRCV 582 (704)
Q Consensus 504 ~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~-~~~~~ 582 (704)
..+.+..+.-.++|.++++++......-||--...-...-......|.+|.|+|++...+++ ..|.|+.=+.. ....-
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w 221 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETW 221 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcccc
Confidence 55778888889999999998766666678754322222223456789999999998876644 78888887722 11111
Q ss_pred ----eeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccc
Q 005277 583 ----TPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKV 658 (704)
Q Consensus 583 ----~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~ 658 (704)
..+..-.-.+.+++| .+++...++|+. |.+.+ ..+.++
T Consensus 222 ~~~~~~~~~~~~~~ld~a~----------------------------------~~~~~~wa~gg~-G~l~~-S~DgGk-- 263 (302)
T PF14870_consen 222 SEPIIPIKTNGYGILDLAY----------------------------------RPPNEIWAVGGS-GTLLV-STDGGK-- 263 (302)
T ss_dssp ---B-TTSS--S-EEEEEE----------------------------------SSSS-EEEEEST-T-EEE-ESSTTS--
T ss_pred ccccCCcccCceeeEEEEe----------------------------------cCCCCEEEEeCC-ccEEE-eCCCCc--
Confidence 111112233566677 667777776654 43332 223322
Q ss_pred cccccccCccccccccccCCCCcCeEEEEEccCCcEEEEee
Q 005277 659 LKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 699 (704)
Q Consensus 659 ~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs 699 (704)
.++.........+.++.+.|.+..+-+|.|.
T Consensus 264 ----------tW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~ 294 (302)
T PF14870_consen 264 ----------TWQKDRVGENVPSNLYRIVFVNPDKGFVLGQ 294 (302)
T ss_dssp ----------S-EE-GGGTTSSS---EEEEEETTEEEEE-S
T ss_pred ----------cceECccccCCCCceEEEEEcCCCceEEECC
Confidence 1222223333455689999988888787764
No 416
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.01 E-value=0.24 Score=57.86 Aligned_cols=143 Identities=13% Similarity=0.025 Sum_probs=93.7
Q ss_pred cCeEEEEEcCCCCEEE--EEeCCCeEEEEeCCCCcee-----EEee------cCCcCeeEEEEcCC-CCEEEEEeCCCeE
Q 005277 422 GPVYSASFSPLGDFIL--SSSADTTIRLWSTKLNANL-----VCYK------GHNYPVWDVQFNPQ-GHYFASSSHDRTA 487 (704)
Q Consensus 422 ~~V~~l~~sp~~~~l~--s~s~Dg~I~lwd~~~~~~~-----~~~~------~h~~~V~~v~~sp~-~~~l~sgs~dg~i 487 (704)
-++..+...+|+...+ ..+.+-.|..||++....- .-+. ....-..++.|+|. -..++.+..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 4566666677766544 3344457888998754321 1111 12234567889884 3346777889999
Q ss_pred EEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeec----CCCCEEEEEEecCCCEEE
Q 005277 488 RIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG----HRSMILSLAMSPDGRYMA 563 (704)
Q Consensus 488 ~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~----h~~~i~~l~~spdg~~l~ 563 (704)
++..+....+...--.....++|++|+|.|+.+++|-..|++.-|-. +++..+.+.+ ....|.+++|-..-.+++
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv 259 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQEFLV 259 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEecceeEEE
Confidence 99887654333222235567899999999999999999999988865 3333333321 146899999988777776
Q ss_pred EE
Q 005277 564 SG 565 (704)
Q Consensus 564 sg 565 (704)
+-
T Consensus 260 vy 261 (1405)
T KOG3630|consen 260 VY 261 (1405)
T ss_pred Ee
Confidence 53
No 417
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=94.99 E-value=4.8 Score=41.04 Aligned_cols=208 Identities=16% Similarity=0.122 Sum_probs=114.5
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEE--EcC
Q 005277 354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS--FSP 431 (704)
Q Consensus 354 V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~--~sp 431 (704)
|..+...++-+.|++-+ |+.+.++++.............. + ..............+...+ -..
T Consensus 38 I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~------------~--~~~~~~~~~~~~~~v~~f~~~~~~ 102 (275)
T PF00780_consen 38 ITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAF------------P--KSRSLPTKLPETKGVSFFAVNGGH 102 (275)
T ss_pred EEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccc------------c--ccccccccccccCCeeEEeecccc
Confidence 88888888877666654 59999999986432221100000 0 0000001111223344433 112
Q ss_pred CC-CEEEEEeCCCeEEEEeCCCC-----ceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCC
Q 005277 432 LG-DFILSSSADTTIRLWSTKLN-----ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL 505 (704)
Q Consensus 432 ~~-~~l~s~s~Dg~I~lwd~~~~-----~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~ 505 (704)
.+ ..|+.+. ...|.+|.+... .....+. -...+.+++|. ++.++.|.. +...+.|+.++.....+....
T Consensus 103 ~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~-~~f~~idl~~~~~~~l~~~~~ 177 (275)
T PF00780_consen 103 EGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTS-KGFYLIDLNTGSPSELLDPSD 177 (275)
T ss_pred ccceEEEEEE-CCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeC-CceEEEecCCCCceEEeCccC
Confidence 33 3444444 458999887653 2334444 34678899998 667777765 458888998776655543211
Q ss_pred ------------CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEE--EeecCCCCEEEEEEecCCCEEEEEeCCCeE
Q 005277 506 ------------SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVR--IFIGHRSMILSLAMSPDGRYMASGDEDGTI 571 (704)
Q Consensus 506 ------------~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~--~~~~h~~~i~~l~~spdg~~l~sg~~dg~I 571 (704)
.++..+.. +++.+|++- +..-...|. .|+..+ .+. -...+.++++. ..+|++.+. +.|
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~-W~~~p~~~~~~--~pyli~~~~-~~i 249 (275)
T PF00780_consen 178 SSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKSTIQ-WSSAPQSVAYS--SPYLIAFSS-NSI 249 (275)
T ss_pred CcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccEEE-cCCchhEEEEE--CCEEEEECC-CEE
Confidence 22333333 345555543 333333343 444433 121 12355566663 457777666 459
Q ss_pred EEEeCCCCeeeeeecCCC
Q 005277 572 MMWDLASGRCVTPLMGHT 589 (704)
Q Consensus 572 ~iwdl~~~~~~~~~~~h~ 589 (704)
.||++.+++.++.+...+
T Consensus 250 EV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 250 EVRSLETGELVQTIPLPN 267 (275)
T ss_pred EEEECcCCcEEEEEECCC
Confidence 999999999998887544
No 418
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.96 E-value=0.084 Score=37.83 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=29.9
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Q 005277 421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN 455 (704)
Q Consensus 421 ~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~ 455 (704)
...|.+++|+|..++|+.++.+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 456999999999999999999999999998 4544
No 419
>PHA02790 Kelch-like protein; Provisional
Probab=94.94 E-value=1.1 Score=50.16 Aligned_cols=141 Identities=9% Similarity=-0.041 Sum_probs=66.2
Q ss_pred CCEEEEEeCC-----CeEEEEeCCCCceeE--EeecCCcCeeEEEEcCCCCEEEEEeCC--CeEEEEECCCCceeEE--e
Q 005277 433 GDFILSSSAD-----TTIRLWSTKLNANLV--CYKGHNYPVWDVQFNPQGHYFASSSHD--RTARIWSMDRIQPLRI--M 501 (704)
Q Consensus 433 ~~~l~s~s~D-----g~I~lwd~~~~~~~~--~~~~h~~~V~~v~~sp~~~~l~sgs~d--g~i~lwd~~~~~~~~~--~ 501 (704)
+..++.|+.+ .++..||..++.-.. .+.........+. -++...+.||.+ .++..||..+.+-... +
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence 4445566543 246677776644322 1111111111222 267777888754 3577788765432211 1
Q ss_pred ccCCCCeeEEEEcCCCCEEEEEECCC---cEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 005277 502 AGHLSDVDCVRWHINCNYIATGSSDK---TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578 (704)
Q Consensus 502 ~~~~~~V~~v~~~p~~~~l~tgs~dg---~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~ 578 (704)
.........+. -+|.+.+.|+.++ .+..||..++.-...-.-....-...+..-+|+..+.|+ .+.+||..+
T Consensus 350 ~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG---~~e~ydp~~ 424 (480)
T PHA02790 350 LKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR---NAEFYCESS 424 (480)
T ss_pred CCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECC---ceEEecCCC
Confidence 11111111222 3577777777553 477888876543221110001011112233566666663 467788765
Q ss_pred Ce
Q 005277 579 GR 580 (704)
Q Consensus 579 ~~ 580 (704)
.+
T Consensus 425 ~~ 426 (480)
T PHA02790 425 NT 426 (480)
T ss_pred Cc
Confidence 53
No 420
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.80 E-value=1.4 Score=47.41 Aligned_cols=100 Identities=12% Similarity=0.131 Sum_probs=56.4
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-----ceeEE---eec----CCcCeeEEEEcCCCCEEEEEeCC-----
Q 005277 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLN-----ANLVC---YKG----HNYPVWDVQFNPQGHYFASSSHD----- 484 (704)
Q Consensus 422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~-----~~~~~---~~~----h~~~V~~v~~sp~~~~l~sgs~d----- 484 (704)
....++++.+++ |+.++.....++.+.... +.... +.. +......+.|.|+|.+.++-+..
T Consensus 72 ~~p~Gi~~~~~G--lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~ 149 (367)
T TIGR02604 72 SMVTGLAVAVGG--VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKV 149 (367)
T ss_pred CCccceeEecCC--EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCcee
Confidence 345789999888 444555543444455421 11111 221 13447789999999876654421
Q ss_pred --------------CeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEE
Q 005277 485 --------------RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS 524 (704)
Q Consensus 485 --------------g~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs 524 (704)
|.+.-++.+... ...+.........++|+|+|+++++-.
T Consensus 150 ~~~~~~~~~~~~~~g~i~r~~pdg~~-~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 150 TRPGTSDESRQGLGGGLFRYNPDGGK-LRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred ccCCCccCcccccCceEEEEecCCCe-EEEEecCcCCCccceECCCCCEEEEcc
Confidence 345555555443 333333334456889999888876643
No 421
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.64 E-value=0.035 Score=62.80 Aligned_cols=165 Identities=13% Similarity=0.156 Sum_probs=103.5
Q ss_pred eeccCCccCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCC--Cce-----eEEeecCCcCeeEEEEcC---CCCEEEEEeC
Q 005277 415 TLYQGHSGPVYSASFSPLG-DFILSSSADTTIRLWSTKL--NAN-----LVCYKGHNYPVWDVQFNP---QGHYFASSSH 483 (704)
Q Consensus 415 ~~~~~h~~~V~~l~~sp~~-~~l~s~s~Dg~I~lwd~~~--~~~-----~~~~~~h~~~V~~v~~sp---~~~~l~sgs~ 483 (704)
...+|.+|.|-.+.|.... ..+. -.-|...+|+++- |+. +........++.-|.|+| +..++..+-.
T Consensus 126 ~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~ 203 (1283)
T KOG1916|consen 126 ELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLK 203 (1283)
T ss_pred HHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccC
Confidence 4566788888888885422 1222 3336788998763 322 222333445567777877 5677888888
Q ss_pred CCeEEEEECCCCceeEEeccCCCCeeEE-----------EEcCCCCEEEEEECCCcEEEEeCC-----CCcEEEEeecCC
Q 005277 484 DRTARIWSMDRIQPLRIMAGHLSDVDCV-----------RWHINCNYIATGSSDKTVRLWDVS-----SGECVRIFIGHR 547 (704)
Q Consensus 484 dg~i~lwd~~~~~~~~~~~~~~~~V~~v-----------~~~p~~~~l~tgs~dg~I~iwd~~-----~~~~~~~~~~h~ 547 (704)
++++++..+++... ..+.+|...+..+ ..+|||..+++++.||.++.|.+. .-.|+...+.|.
T Consensus 204 ~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 204 GGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHD 282 (1283)
T ss_pred CCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCC
Confidence 99999988876433 3444566554443 257999999999999999888764 334556666776
Q ss_pred C-CEEEEEEecC-------C--CEEEEEe-CCCeEEEEeCCCCeee
Q 005277 548 S-MILSLAMSPD-------G--RYMASGD-EDGTIMMWDLASGRCV 582 (704)
Q Consensus 548 ~-~i~~l~~spd-------g--~~l~sg~-~dg~I~iwdl~~~~~~ 582 (704)
+ +-.|.-|..+ | .++++++ ....+++|....++|+
T Consensus 283 ~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 283 KHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred CCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 3 3333333322 1 2344444 3456889988777665
No 422
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.61 E-value=0.32 Score=56.89 Aligned_cols=133 Identities=14% Similarity=0.089 Sum_probs=85.2
Q ss_pred CcCeeEEEEcCCCCEEEEE--eCCCeEEEEECCCCceeE-----Eec------cCCCCeeEEEEcCCC-CEEEEEECCCc
Q 005277 463 NYPVWDVQFNPQGHYFASS--SHDRTARIWSMDRIQPLR-----IMA------GHLSDVDCVRWHINC-NYIATGSSDKT 528 (704)
Q Consensus 463 ~~~V~~v~~sp~~~~l~sg--s~dg~i~lwd~~~~~~~~-----~~~------~~~~~V~~v~~~p~~-~~l~tgs~dg~ 528 (704)
..++..+...+|+...++. +.+-.|..||++.....+ -+. .......++.|+|.- ...++...|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 3456667777776654443 344478899987543211 111 122346788999863 34466678999
Q ss_pred EEEEeCCCCcE-EEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCC----Cceeeeeee
Q 005277 529 VRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH----TSCVWTLAY 597 (704)
Q Consensus 529 I~iwd~~~~~~-~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h----~~~V~sl~~ 597 (704)
|++..+..... +..+ ......+|++|+|.|+.++.|...|++.-|-. +++....+.+. ...|.++.|
T Consensus 180 l~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~W 251 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTW 251 (1405)
T ss_pred hhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEE
Confidence 99987753322 2222 34567899999999999999999999998874 34433333221 356788888
No 423
>PHA02790 Kelch-like protein; Provisional
Probab=94.57 E-value=1.5 Score=48.96 Aligned_cols=65 Identities=12% Similarity=0.028 Sum_probs=34.3
Q ss_pred CCCCEEEEEECC--CcEEEEeCCCCcEEEEeecCCCCE-EEEEEecCCCEEEEEeCCC---eEEEEeCCCCe
Q 005277 515 INCNYIATGSSD--KTVRLWDVSSGECVRIFIGHRSMI-LSLAMSPDGRYMASGDEDG---TIMMWDLASGR 580 (704)
Q Consensus 515 p~~~~l~tgs~d--g~I~iwd~~~~~~~~~~~~h~~~i-~~l~~spdg~~l~sg~~dg---~I~iwdl~~~~ 580 (704)
-++...++|+.+ .++..||..+++-.. ...-..+. ......-+|+..+.||.++ .+..||..+.+
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~-~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~ 387 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAWVN-MPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQ 387 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeEEE-CCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCE
Confidence 366677777753 457888876654322 11111111 1112223677777777553 35667766543
No 424
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.56 E-value=0.26 Score=50.63 Aligned_cols=148 Identities=17% Similarity=0.189 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCCCCCCCCCCC-CchhhhccccccccccCChhhHHHHHHHHHHHHhhcc
Q 005277 4 LQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDIL-NDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSL 82 (704)
Q Consensus 4 ~~~~~~v~~yl~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 82 (704)
..++++|.+||-+.||.+|-..|-++++..+-.. ..++ +--.|.+.|. ...+.-...|+...=
T Consensus 116 ~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD----~Dv~~~~~~I~~sll------------~~~l~~~Lswc~ehk 179 (389)
T KOG0396|consen 116 NKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVD----SDVYKRAYGIRDSLL------------AGELEPALSWCKEHK 179 (389)
T ss_pred HHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHh----HHHHHHHHHHHHHHH------------hcchHHHHHHHHHHH
Confidence 4689999999999999999999998887643210 0000 0001222221 122445677887765
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhHHhhhHHHHHHHhcCCChhhhccCHHHHHhh-cCceEEE
Q 005277 83 DLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLR-HSKVNIK 161 (704)
Q Consensus 83 d~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~ 161 (704)
-..|.+=+.|=|-+=..=|++||.-+...+|.+|++||=.-+...|..+|+.+.+...- ..|- ..||..-
T Consensus 180 ~~LkK~~S~lEf~lRlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF---------~~~t~~sky~~l 250 (389)
T KOG0396|consen 180 VELKKEESSLEFQLRLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAF---------PKYTSSSKYLNL 250 (389)
T ss_pred HHHHhccchhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcC---------ccccCcccccCc
Confidence 55555556677888889999999999999999999999999988999999987664321 0111 3557777
Q ss_pred EchhhHHHHH-HHHhh
Q 005277 162 ICQYSYELLL-QYLHK 176 (704)
Q Consensus 162 ~~~~~~~~l~-~~l~~ 176 (704)
++..-++-|- .|+++
T Consensus 251 ~~~~rw~~l~~lF~s~ 266 (389)
T KOG0396|consen 251 LTADRWSVLADLFLSE 266 (389)
T ss_pred ccHHHHHHHHHHhhHH
Confidence 7777777665 35543
No 425
>PRK13684 Ycf48-like protein; Provisional
Probab=94.51 E-value=4.1 Score=43.13 Aligned_cols=114 Identities=18% Similarity=0.177 Sum_probs=66.0
Q ss_pred CcCeeEEEEcCCCCEEEEEeCCCeEEE-EECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEE
Q 005277 463 NYPVWDVQFNPQGHYFASSSHDRTARI-WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVR 541 (704)
Q Consensus 463 ~~~V~~v~~sp~~~~l~sgs~dg~i~l-wd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~ 541 (704)
...+.++.+.|++.+++++. .|.+.. ++-....-..........+.++.+.+++..+++| ..|.+++=....|..-.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccc
Confidence 45688999999987776664 454433 2222111222223445678999999999887776 45766533344444322
Q ss_pred Eeec----CCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCe
Q 005277 542 IFIG----HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR 580 (704)
Q Consensus 542 ~~~~----h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~ 580 (704)
.... ....+..+.+.|++..+++ +.+|.|. .....++
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~-~S~d~G~ 290 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLL-VSKDGGK 290 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEEE-cCCCeEE-EeCCCCC
Confidence 2211 1235788999998876554 4567554 3444443
No 426
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.49 E-value=2.5 Score=41.16 Aligned_cols=131 Identities=11% Similarity=0.063 Sum_probs=81.5
Q ss_pred eEEEEEcCCCCEEEEEeCC---------CeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEE-EEeCCCeEEEEE--
Q 005277 424 VYSASFSPLGDFILSSSAD---------TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA-SSSHDRTARIWS-- 491 (704)
Q Consensus 424 V~~l~~sp~~~~l~s~s~D---------g~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~-sgs~dg~i~lwd-- 491 (704)
.+.-..+|+|++..-.-.| |.++.|-. +..+..+...-.--..++|+.+.+.|. +-+.+-+|.-||
T Consensus 111 ~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~--~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd 188 (310)
T KOG4499|consen 111 LNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLA--GHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYD 188 (310)
T ss_pred cccCccCCCCceeeeeeccccccccccccEEEEecc--CCCceeeehhccCCccccccccCcEEEEEccCceEEeeeecC
Confidence 3444567888874422222 33444433 223333333333445788887766554 456677787787
Q ss_pred CCCCc-----eeEEecc----CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEe
Q 005277 492 MDRIQ-----PLRIMAG----HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMS 556 (704)
Q Consensus 492 ~~~~~-----~~~~~~~----~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~s 556 (704)
+.++. .+..+.. ..-.-..++...+|++.++.-..++|...|..+|+.+..+.-....|+|++|-
T Consensus 189 ~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 189 CPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred CCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence 43332 2222221 11112345556688888888889999999999999999998889999999995
No 427
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.40 E-value=8 Score=40.86 Aligned_cols=100 Identities=9% Similarity=0.119 Sum_probs=53.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce---eEEe----ecCCcCeeEEEEcCC----CCEEEEEeCC--------
Q 005277 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNAN---LVCY----KGHNYPVWDVQFNPQ----GHYFASSSHD-------- 484 (704)
Q Consensus 424 V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~---~~~~----~~h~~~V~~v~~sp~----~~~l~sgs~d-------- 484 (704)
-.+|+|.|+++.+++ ...|.|++++. .+.. +... .........++++|+ +...++.+..
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~~-~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVDK-DGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEET-TTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEeC-CCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 478999999886664 56999999993 3333 2222 123456789999994 3333333321
Q ss_pred CeEEEEECCCC-------cee-EEecc---CCCCeeEEEEcCCCCEEEEEEC
Q 005277 485 RTARIWSMDRI-------QPL-RIMAG---HLSDVDCVRWHINCNYIATGSS 525 (704)
Q Consensus 485 g~i~lwd~~~~-------~~~-~~~~~---~~~~V~~v~~~p~~~~l~tgs~ 525 (704)
..|.-|..... +.+ ..... ....-..+.|.|+|.+.++.+.
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 23444444332 111 11122 2234567999999976666543
No 428
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.38 E-value=1.9 Score=46.38 Aligned_cols=142 Identities=12% Similarity=0.121 Sum_probs=92.0
Q ss_pred CCCEEE-EEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCC-------EEEEEeCCCeEEEEECCC-CceeEEec
Q 005277 432 LGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-------YFASSSHDRTARIWSMDR-IQPLRIMA 502 (704)
Q Consensus 432 ~~~~l~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~-------~l~sgs~dg~i~lwd~~~-~~~~~~~~ 502 (704)
+..+|+ .|.....++-.|++.|+.+....-|..- -+.|.|... .-++|-.+..|.-.|.+- +..+....
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e 555 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE 555 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence 344444 5566667777888889888888877654 477877432 234455566666666543 22222211
Q ss_pred ----cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 005277 503 ----GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA 577 (704)
Q Consensus 503 ----~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~ 577 (704)
.......|..- ....|+|+|+..|.|++||--..+....+.+-...|..+..+.+|+++++.+. ..+.+-|++
T Consensus 556 sKdY~tKn~Fss~~t-TesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 556 SKDYKTKNKFSSGMT-TESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred ehhcccccccccccc-ccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 11122333322 24569999999999999996544444456677788999999999999887765 467777765
No 429
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.33 E-value=2.4 Score=48.56 Aligned_cols=173 Identities=16% Similarity=0.172 Sum_probs=98.4
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEc
Q 005277 351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (704)
Q Consensus 351 ~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 430 (704)
.+.++|+. . ..+|+++. .+.|.||+.+......... +.......+ ........ ........|+ |+.|...
T Consensus 40 KNNLtals--q-~n~LFiA~-~s~I~Vy~~d~l~~~p~~~-p~~~~~t~p-~~~~~~D~--~~s~~p~PHt--IN~i~v~ 109 (717)
T PF08728_consen 40 KNNLTALS--Q-RNLLFIAY-QSEIYVYDPDGLTQLPSRK-PCLRFDTKP-EFTSTPDR--LISTWPFPHT--INFIKVG 109 (717)
T ss_pred ccceeEEe--c-CCEEEEEE-CCEEEEEecCCcccccccc-cccccccCc-cccccccc--cccCCCCCce--eeEEEec
Confidence 34444443 2 66777764 7899999987643321100 000000000 00000000 0001113343 4444433
Q ss_pred --CCCCEEEEEeCCCeEEEEeCCC-------C----c---------eeEEeecCCcCeeEEEEc--CCCCEEEEEeCCCe
Q 005277 431 --PLGDFILSSSADTTIRLWSTKL-------N----A---------NLVCYKGHNYPVWDVQFN--PQGHYFASSSHDRT 486 (704)
Q Consensus 431 --p~~~~l~s~s~Dg~I~lwd~~~-------~----~---------~~~~~~~h~~~V~~v~~s--p~~~~l~sgs~dg~ 486 (704)
-....|+.|..||.|.+|.+++ . . +...++ -...+|+++++ ...+++|+++....
T Consensus 110 ~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~ 188 (717)
T PF08728_consen 110 DLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQE 188 (717)
T ss_pred ccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCce
Confidence 3456889999999999997531 0 0 111122 24579999999 78889999998898
Q ss_pred EEEEECCCC--c-eeEEeccCCCCeeEEEEcCCC---C---EEEEEECCCcEEEEeC
Q 005277 487 ARIWSMDRI--Q-PLRIMAGHLSDVDCVRWHINC---N---YIATGSSDKTVRLWDV 534 (704)
Q Consensus 487 i~lwd~~~~--~-~~~~~~~~~~~V~~v~~~p~~---~---~l~tgs~dg~I~iwd~ 534 (704)
|.||-.... + ....-..+...|-+|+|-++. . +|++++-.|.+.+|++
T Consensus 189 VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 189 VTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 988866432 1 111111356678999997643 2 7888889999999887
No 430
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.29 E-value=7.7 Score=40.20 Aligned_cols=229 Identities=12% Similarity=0.119 Sum_probs=107.2
Q ss_pred CccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEe--ecC---CcCeeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 005277 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY--KGH---NYPVWDVQFNPQGHYFASSSHDRTARIWSMDR 494 (704)
Q Consensus 420 h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~--~~h---~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~ 494 (704)
-..++.+|.|..+..-+++|. .++| +-..+.++.=... ... .....+|.|..+ ..+++| ..+ +.+...+.
T Consensus 15 t~~~l~dV~F~d~~~G~~VG~-~g~i-l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~ivG-~~g-~ll~T~Dg 89 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVGA-YGTI-LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIVG-EPG-LLLHTTDG 89 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEET-TTEE-EEESSTTSS-EE-----S-----EEEEEEEETT-EEEEEE-ETT-EEEEESST
T ss_pred CCCceEEEEEecCCEEEEEec-CCEE-EEECCCCccccccccCCCccceeeEEEEEecCC-ceEEEc-CCc-eEEEecCC
Confidence 345899999995555555554 4544 2233323221111 111 234667888643 344444 444 44444554
Q ss_pred CceeEEec---cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEE-EEeecCCCCEEEEEEecCCCEEEEEeCCCe
Q 005277 495 IQPLRIMA---GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECV-RIFIGHRSMILSLAMSPDGRYMASGDEDGT 570 (704)
Q Consensus 495 ~~~~~~~~---~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~-~~~~~h~~~i~~l~~spdg~~l~sg~~dg~ 570 (704)
++.-..+. .-......+....++..+++ +..|.|+.= ...|+.- .......+.+..+..++||++++++.....
T Consensus 90 G~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~-~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~ 167 (302)
T PF14870_consen 90 GKTWERVPLSSKLPGSPFGITALGDGSAELA-GDRGAIYRT-TDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNF 167 (302)
T ss_dssp TSS-EE----TT-SS-EEEEEEEETTEEEEE-ETT--EEEE-SSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSE
T ss_pred CCCcEEeecCCCCCCCeeEEEEcCCCcEEEE-cCCCcEEEe-CCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccE
Confidence 44333221 11223333443344433333 344544332 2233322 223345577899999999999998877666
Q ss_pred EEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEE
Q 005277 571 IMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLW 650 (704)
Q Consensus 571 I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iW 650 (704)
..-||-....-...-+.-...|.+|.| ++++.+.+.+ ..|.|++=
T Consensus 168 ~~s~~~G~~~w~~~~r~~~~riq~~gf----------------------------------~~~~~lw~~~-~Gg~~~~s 212 (302)
T PF14870_consen 168 YSSWDPGQTTWQPHNRNSSRRIQSMGF----------------------------------SPDGNLWMLA-RGGQIQFS 212 (302)
T ss_dssp EEEE-TT-SS-EEEE--SSS-EEEEEE-----------------------------------TTS-EEEEE-TTTEEEEE
T ss_pred EEEecCCCccceEEccCccceehhcee----------------------------------cCCCCEEEEe-CCcEEEEc
Confidence 778886533222333334578899998 8888776655 77888887
Q ss_pred eCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeec
Q 005277 651 DVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL 700 (704)
Q Consensus 651 d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~ 700 (704)
+......... ..+.......-.+..++|.+++.+.|+|+.
T Consensus 213 ~~~~~~~~w~----------~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~ 252 (302)
T PF14870_consen 213 DDPDDGETWS----------EPIIPIKTNGYGILDLAYRPPNEIWAVGGS 252 (302)
T ss_dssp E-TTEEEEE-------------B-TTSS--S-EEEEEESSSS-EEEEEST
T ss_pred cCCCCccccc----------cccCCcccCceeeEEEEecCCCCEEEEeCC
Confidence 7222111100 112223334455899999999998888765
No 431
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.27 E-value=5.6 Score=46.42 Aligned_cols=29 Identities=17% Similarity=0.357 Sum_probs=21.8
Q ss_pred CcCeeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 005277 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSM 492 (704)
Q Consensus 463 ~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~ 492 (704)
...|..|.++|+|++++..|..|. .|..+
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v-~V~~L 112 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGV-VVLEL 112 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcE-EEEEe
Confidence 456889999999999999887554 44433
No 432
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.09 E-value=2.7 Score=45.21 Aligned_cols=141 Identities=9% Similarity=0.082 Sum_probs=79.4
Q ss_pred CeEEEEEcCCCCEEEEEe-----------CCC-eEEEEeCCC--Cc--eeEEeecCCcCeeEEEEcCCCCEEEEEeCCCe
Q 005277 423 PVYSASFSPLGDFILSSS-----------ADT-TIRLWSTKL--NA--NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT 486 (704)
Q Consensus 423 ~V~~l~~sp~~~~l~s~s-----------~Dg-~I~lwd~~~--~~--~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~ 486 (704)
....|+|.++|+++++.. ..+ .|.+++-.. +. ....+-..-.....+++.++| .++ ++....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeE
Confidence 456889999999776643 223 677775432 22 223443334456789999888 444 444443
Q ss_pred EEEEECCCC-----ceeEE---ecc----CCCCeeEEEEcCCCCEEEEEECC-------------------CcEEEEeCC
Q 005277 487 ARIWSMDRI-----QPLRI---MAG----HLSDVDCVRWHINCNYIATGSSD-------------------KTVRLWDVS 535 (704)
Q Consensus 487 i~lwd~~~~-----~~~~~---~~~----~~~~V~~v~~~p~~~~l~tgs~d-------------------g~I~iwd~~ 535 (704)
.++.|.+.. +.... +.. +......++|.|+|.+.++-+.. |.|.-+|..
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd 172 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD 172 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence 344455321 22112 211 12346789999999876654421 445555655
Q ss_pred CCcEEEEeecCCCCEEEEEEecCCCEEEEEe
Q 005277 536 SGECVRIFIGHRSMILSLAMSPDGRYMASGD 566 (704)
Q Consensus 536 ~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~ 566 (704)
+++....-.++ .....++|+|+|+++++-.
T Consensus 173 g~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 173 GGKLRVVAHGF-QNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCeEEEEecCc-CCCccceECCCCCEEEEcc
Confidence 44432222233 3356899999998877644
No 433
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.09 E-value=7.8 Score=39.54 Aligned_cols=221 Identities=17% Similarity=0.247 Sum_probs=121.2
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeecc-----CCccCeEEEEE
Q 005277 355 NCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ-----GHSGPVYSASF 429 (704)
Q Consensus 355 ~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~h~~~V~~l~~ 429 (704)
..++|+|.+.+-++....+...+||........... ....... .-.+..+.+.|
T Consensus 26 WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~---------------------~L~vtiP~~~~~~~~~~PTGiVf 84 (336)
T TIGR03118 26 WGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQD---------------------PLVVVIPAPPPLAAEGTPTGQVF 84 (336)
T ss_pred ceeEecCCCCEEEecCCcceEEeecCCcccccCCcc---------------------ceEEEecCCCCCCCCCCccEEEE
Confidence 568999999888888888999999987311100000 0000000 01233455555
Q ss_pred cCCCC------------EEEEEeCCCeEEEEeCCCCce-----eEEee-cCCcCe-eEEEEcC--CCCEEEEE-eCCCeE
Q 005277 430 SPLGD------------FILSSSADTTIRLWSTKLNAN-----LVCYK-GHNYPV-WDVQFNP--QGHYFASS-SHDRTA 487 (704)
Q Consensus 430 sp~~~------------~l~s~s~Dg~I~lwd~~~~~~-----~~~~~-~h~~~V-~~v~~sp--~~~~l~sg-s~dg~i 487 (704)
+.... .++.+++||+|.-|....... ...+. +....| ..+++.. .+.+|..+ -..++|
T Consensus 85 N~~~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~I 164 (336)
T TIGR03118 85 NGSDTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRI 164 (336)
T ss_pred eCCCceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCce
Confidence 53222 367789999999998532221 22222 112233 3445443 34555444 367888
Q ss_pred EEEECCCCcee--EEecc-----CCCC--eeE------EEE---cCCCCEEEEEECCCcEEEEeCCCCcEEEEee--cCC
Q 005277 488 RIWSMDRIQPL--RIMAG-----HLSD--VDC------VRW---HINCNYIATGSSDKTVRLWDVSSGECVRIFI--GHR 547 (704)
Q Consensus 488 ~lwd~~~~~~~--~~~~~-----~~~~--V~~------v~~---~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~--~h~ 547 (704)
.++|-.-.... ..+.. .-.+ |.. |.| .++.+.=+.|..-|.|-+||. .|+.++.+. +.-
T Consensus 165 DVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~L 243 (336)
T TIGR03118 165 DVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRL 243 (336)
T ss_pred EEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcc
Confidence 88876432211 00110 0000 111 111 122222223344578999997 677777773 222
Q ss_pred CCEEEEEEec------CCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCc------eeeeeee
Q 005277 548 SMILSLAMSP------DGRYMASGDEDGTIMMWDLASGRCVTPLMGHTS------CVWTLAY 597 (704)
Q Consensus 548 ~~i~~l~~sp------dg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~------~V~sl~~ 597 (704)
.....|+..| .|.+|+--..||+|..+|..+++.+-.+....+ .+|.+.|
T Consensus 244 NaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~f 305 (336)
T TIGR03118 244 NAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTF 305 (336)
T ss_pred cCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeee
Confidence 3455677766 577888888899999999999988877765432 3455555
No 434
>PRK13684 Ycf48-like protein; Provisional
Probab=93.79 E-value=11 Score=40.01 Aligned_cols=144 Identities=17% Similarity=0.169 Sum_probs=77.9
Q ss_pred CCCeeEEEEcCCCCEEEEEECCCcEEE-EeCCCCcEE-EEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeee
Q 005277 505 LSDVDCVRWHINCNYIATGSSDKTVRL-WDVSSGECV-RIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582 (704)
Q Consensus 505 ~~~V~~v~~~p~~~~l~tgs~dg~I~i-wd~~~~~~~-~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~ 582 (704)
...+.++.+.|++.++++|. .|.+.. +| ..++.- .....-...++++.+.++++.+++| ..|.+.+=....|..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 45688899999987776664 554443 22 122222 2222344678999999999877665 4576653223333322
Q ss_pred eeecCC----CceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccc
Q 005277 583 TPLMGH----TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKV 658 (704)
Q Consensus 583 ~~~~~h----~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~ 658 (704)
.....+ ...+.++.+ .+++..+++| .+|.|. .....+..
T Consensus 249 ~~~~~~~~~~~~~l~~v~~----------------------------------~~~~~~~~~G-~~G~v~-~S~d~G~t- 291 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAY----------------------------------RTPGEIWAGG-GNGTLL-VSKDGGKT- 291 (334)
T ss_pred ccccCCccccccceeeEEE----------------------------------cCCCCEEEEc-CCCeEE-EeCCCCCC-
Confidence 211111 123455555 6666655544 566554 33333221
Q ss_pred cccccccCccccccccccCCCCcCeEEEEEccCCcEEEEee
Q 005277 659 LKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 699 (704)
Q Consensus 659 ~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs 699 (704)
+..+..........+.+.|..++..+++|.
T Consensus 292 -----------W~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 321 (334)
T PRK13684 292 -----------WEKDPVGEEVPSNFYKIVFLDPEKGFVLGQ 321 (334)
T ss_pred -----------CeECCcCCCCCcceEEEEEeCCCceEEECC
Confidence 111211112234688888888888888765
No 435
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=93.75 E-value=0.18 Score=48.92 Aligned_cols=169 Identities=14% Similarity=0.215 Sum_probs=103.0
Q ss_pred chHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCCCCCCCCCCCCch-hhhccccccccccCChhhHHHHHHHHHHHHhh
Q 005277 2 DELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDP-ELSKFFRTFSESEDGPARYQDEYSKLRSWTYS 80 (704)
Q Consensus 2 ~~~~~~~~v~~yl~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 80 (704)
..+|++++|++||---||.++-+.|..|+....+.-.... +.+- .|...+ . -.+...|..++.+--=.
T Consensus 25 ~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~---~~eR~~Ir~~I-----~---~G~Ie~Aie~in~l~Pe 93 (228)
T KOG2659|consen 25 MREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDS---MDERLQIRRAI-----E---EGQIEEAIEKVNQLNPE 93 (228)
T ss_pred chhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhh---HhHHHHHHHHH-----H---hccHHHHHHHHHHhChH
Confidence 5689999999999999999999999999887653111100 0000 111111 1 11234455555433322
Q ss_pred ccccchhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhHH---hhhHHHHHHHhcCCChhhhccCHHHHHhhcCc
Q 005277 81 SLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHE---MMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSK 157 (704)
Q Consensus 81 ~ld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 157 (704)
-||.-+ .|+|=+-..-+++||..|..++|-+|+..--.-+. ..+.+.+++.-.+.--+.-+..|.+. +-+..
T Consensus 94 iLd~n~----~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~~-l~~~s 168 (228)
T KOG2659|consen 94 ILDTNR----ELFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSAE-LLSQS 168 (228)
T ss_pred HHccch----hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHHH-HHHHH
Confidence 222222 26777777788999999999999999988655542 13556666533332222223344444 45566
Q ss_pred eEEEEchhhHHHHHHHHhhcCcchHHHhh
Q 005277 158 VNIKICQYSYELLLQYLHKTQSTKMLGII 186 (704)
Q Consensus 158 ~~~~~~~~~~~~l~~~l~~~~~~~~~~i~ 186 (704)
|+-++....-.-++.+.+......|..|+
T Consensus 169 ~R~kvA~~vN~aiL~~~~~~~~~~l~~ll 197 (228)
T KOG2659|consen 169 LRQKVASEVNSAILASQEHESEPKLPFLL 197 (228)
T ss_pred HHHHHHHHHHHHHHHHhcccccchHHHHH
Confidence 67777777777777777766556666666
No 436
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=93.69 E-value=12 Score=40.52 Aligned_cols=187 Identities=14% Similarity=0.111 Sum_probs=102.0
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCC------------------
Q 005277 434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI------------------ 495 (704)
Q Consensus 434 ~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~------------------ 495 (704)
.+++.-+.||++.+++-+.......+.+ ---.-.+.+++.-..|++++.+..+.-|.....
T Consensus 146 ~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~ 224 (418)
T PF14727_consen 146 DFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDIS 224 (418)
T ss_pred eEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhcccccccccccccccc
Confidence 4677889999999999875544443433 222234778888889999998888888864210
Q ss_pred --c---eeEEeccC--CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEE-Eec----CC---C
Q 005277 496 --Q---PLRIMAGH--LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLA-MSP----DG---R 560 (704)
Q Consensus 496 --~---~~~~~~~~--~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~-~sp----dg---~ 560 (704)
+ +-..+.-. --+|..+.++.+...+++-+ ..++.+.+- +|.. +..+.......|++ |.. ++ .
T Consensus 225 ~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~-~G~l-~~~krLd~~p~~~~~Y~~~~~~~~~~~~ 301 (418)
T PF14727_consen 225 SGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG-ERSLFCLKD-NGSL-RFQKRLDYNPSCFCPYRVPWYNEPSTRL 301 (418)
T ss_pred ccccccceeEEECCceeEEEEEEEcCCCCceEEEEe-cceEEEEcC-CCeE-EEEEecCCceeeEEEEEeecccCCCCce
Confidence 0 11111111 11233444443444444443 345555554 4533 33333333333332 211 22 2
Q ss_pred EEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEE
Q 005277 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLAS 640 (704)
Q Consensus 561 ~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~las 640 (704)
.++.++.++.+.||.=. +.+-.-+....+| ++.. +.+..-...|++
T Consensus 302 ~llV~t~t~~LlVy~d~--~L~WsA~l~~~PV-al~v-------------------------------~~~~~~~G~IV~ 347 (418)
T PF14727_consen 302 NLLVGTHTGTLLVYEDT--TLVWSAQLPHVPV-ALSV-------------------------------ANFNGLKGLIVS 347 (418)
T ss_pred EEEEEecCCeEEEEeCC--eEEEecCCCCCCE-EEEe-------------------------------cccCCCCceEEE
Confidence 58889999999998632 2222222122222 2211 111333568889
Q ss_pred EeCCCcEEEEeCCCCccc
Q 005277 641 GSADCTVKLWDVTTSTKV 658 (704)
Q Consensus 641 gs~Dg~V~iWd~~~~~~~ 658 (704)
-+.+|.+.+-=+-+....
T Consensus 348 Ls~~G~L~v~YLGTdPs~ 365 (418)
T PF14727_consen 348 LSDEGQLSVSYLGTDPSL 365 (418)
T ss_pred EcCCCcEEEEEeCCCCcc
Confidence 999999999888775543
No 437
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=93.48 E-value=10 Score=38.77 Aligned_cols=205 Identities=16% Similarity=0.219 Sum_probs=114.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeCC------CC-ceeEEeec-----CCcCeeEEEEcCCCC------------EEE
Q 005277 424 VYSASFSPLGDFILSSSADTTIRLWSTK------LN-ANLVCYKG-----HNYPVWDVQFNPQGH------------YFA 479 (704)
Q Consensus 424 V~~l~~sp~~~~l~s~s~Dg~I~lwd~~------~~-~~~~~~~~-----h~~~V~~v~~sp~~~------------~l~ 479 (704)
-..|+++|.+.+-++....+...+||.. .. ..+..+.. .....+.+.|+.... .|+
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4689999999888888888999999986 22 22334432 124567787775322 367
Q ss_pred EEeCCCeEEEEECCCCce-----eEEec-cCCCCe-eEEEEcCC--CCEEEEE-ECCCcEEEEeCCCCcEEEE---eecC
Q 005277 480 SSSHDRTARIWSMDRIQP-----LRIMA-GHLSDV-DCVRWHIN--CNYIATG-SSDKTVRLWDVSSGECVRI---FIGH 546 (704)
Q Consensus 480 sgs~dg~i~lwd~~~~~~-----~~~~~-~~~~~V-~~v~~~p~--~~~l~tg-s~dg~I~iwd~~~~~~~~~---~~~h 546 (704)
.++.||+|.-|...-... ...+. .....| ..+++... +++|..+ -..++|.+||-.=.+ +.. |...
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~-~~~~g~F~DP 183 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRP-PPLPGSFIDP 183 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccc-ccCCCCccCC
Confidence 888999999998532211 12222 111222 34555433 5566554 367889999853222 111 1100
Q ss_pred ----------------CCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecC--CCceeeeeeeeeeehcccccc
Q 005277 547 ----------------RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG--HTSCVWTLAYRFLLLVTNAYL 608 (704)
Q Consensus 547 ----------------~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~--h~~~V~sl~~~~~~~~~~~~~ 608 (704)
.-.|+-..-.++++.=+.|..-|.|-+||+ .|+.++++.. .-..-|.|+..+
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~AP--------- 253 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAP--------- 253 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeCh---------
Confidence 001111111222222233445578999996 5677776631 112233333210
Q ss_pred ccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccc
Q 005277 609 KISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKV 658 (704)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~ 658 (704)
..+=...+.+|+---.||+|..+|..++.-+
T Consensus 254 -------------------a~FG~~sg~lLVGNFGDG~InaFD~~sG~~~ 284 (336)
T TIGR03118 254 -------------------ESFGSLSGALLVGNFGDGTINAYDPQSGAQL 284 (336)
T ss_pred -------------------hhhCCCCCCeEEeecCCceeEEecCCCCcee
Confidence 0011456777877778999999999887654
No 438
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.35 E-value=0.94 Score=49.73 Aligned_cols=117 Identities=14% Similarity=0.236 Sum_probs=75.0
Q ss_pred CCccCeEEEEEcCCC----CEEEEEeCCCeEEEEeCCC-----CceeEEeecC---CcC--eeEEEEcCCCCEEEEEeCC
Q 005277 419 GHSGPVYSASFSPLG----DFILSSSADTTIRLWSTKL-----NANLVCYKGH---NYP--VWDVQFNPQGHYFASSSHD 484 (704)
Q Consensus 419 ~h~~~V~~l~~sp~~----~~l~s~s~Dg~I~lwd~~~-----~~~~~~~~~h---~~~--V~~v~~sp~~~~l~sgs~d 484 (704)
|.-..|.++.|.|-+ ..|+.......|.+|.+.. ++.+.....+ ..+ -..+.|+|....+++-...
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~ 133 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR 133 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence 344569999999963 3566666678999998762 2222222211 112 2457899999888887766
Q ss_pred CeEEEEECCCCc-eeEEeccCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCC
Q 005277 485 RTARIWSMDRIQ-PLRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVS 535 (704)
Q Consensus 485 g~i~lwd~~~~~-~~~~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~ 535 (704)
..-.++++.... .+..--...+-|.|.+|.+||+.|+++- +.=.-++||-.
T Consensus 134 dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 134 DVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred ceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 665666664322 2222224567899999999999887753 23346788854
No 439
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.25 E-value=0.19 Score=57.23 Aligned_cols=31 Identities=6% Similarity=0.229 Sum_probs=21.7
Q ss_pred CCEEEEEEcC---CCCEEEEEeCCCcEEEEEccc
Q 005277 352 NGLNCASISQ---DGSLVAGGFSDSSLKVWDMAK 382 (704)
Q Consensus 352 ~~V~~~~fs~---dg~~lasg~~dg~I~iwdl~~ 382 (704)
..+.-+.|.| +.-++..|-.+|.|++.+++.
T Consensus 181 s~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~r 214 (1283)
T KOG1916|consen 181 SDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINR 214 (1283)
T ss_pred CCcceeeecccccccceeeeccCCCceeEeeech
Confidence 3344455544 667888888899999888764
No 440
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.07 E-value=1.9 Score=48.96 Aligned_cols=113 Identities=10% Similarity=0.108 Sum_probs=72.5
Q ss_pred CEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeec-CCCceeeeeeeeeeehccccccccccccccceeeeeeeEEe
Q 005277 549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM-GHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIY 627 (704)
Q Consensus 549 ~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~-~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (704)
.++-+.-|.-++.-++-+....+.|||.+.+.....-. ...+.|.+++|..
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWts---------------------------- 82 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTS---------------------------- 82 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeee----------------------------
Confidence 34445555556655555556689999999887544332 4578899999943
Q ss_pred ecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCcccccccccc--CC-CCcCeEEEEEccCCcEEEEee
Q 005277 628 FGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTL--PT-KSTPVYSLQFSRRNLLFAAGA 699 (704)
Q Consensus 628 ~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~--~~-~~~~V~~l~fs~~g~~La~gs 699 (704)
.|+|+.+.+.|-.+.|.++--....-. .....+..+..+ .. ...+|.+..|.++|.++++++
T Consensus 83 ----t~d~qsiLaVGf~~~v~l~~Q~R~dy~------~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG 147 (631)
T PF12234_consen 83 ----TPDGQSILAVGFPHHVLLYTQLRYDYT------NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG 147 (631)
T ss_pred ----cCCCCEEEEEEcCcEEEEEEccchhhh------cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC
Confidence 789999999999999999865321111 001111222221 12 235899999999998877654
No 441
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.93 E-value=2.9 Score=47.47 Aligned_cols=110 Identities=12% Similarity=0.056 Sum_probs=73.4
Q ss_pred CeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec-cCCCCeeEEEEc--CCCCEEEEEECCCcEEEEeCC-----C
Q 005277 465 PVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA-GHLSDVDCVRWH--INCNYIATGSSDKTVRLWDVS-----S 536 (704)
Q Consensus 465 ~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~-~~~~~V~~v~~~--p~~~~l~tgs~dg~I~iwd~~-----~ 536 (704)
.+.-+.-+.-++..++-+....+.|||.+.+.....-. ...+.|..+.|. |+++.+++.+-.+.|.+|.-. .
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 34445555556555555566789999998876433222 346789999987 688888888889999888531 1
Q ss_pred ----CcEEEEe--ecCC-CCEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 005277 537 ----GECVRIF--IGHR-SMILSLAMSPDGRYMASGDEDGTIMMWDL 576 (704)
Q Consensus 537 ----~~~~~~~--~~h~-~~i~~l~~spdg~~l~sg~~dg~I~iwdl 576 (704)
-..++.+ ..|+ .+|.+..|.++|..++.+| +.+.|+|-
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 1223322 2333 5799999999997665543 46888874
No 442
>PLN02153 epithiospecifier protein
Probab=92.74 E-value=15 Score=38.85 Aligned_cols=64 Identities=6% Similarity=0.097 Sum_probs=32.7
Q ss_pred CCCEEEEEeCC-----CeEEEEECCCCceeEE--ecc---CCCC-eeEEEEcCCCCEEEEEECC-----------CcEEE
Q 005277 474 QGHYFASSSHD-----RTARIWSMDRIQPLRI--MAG---HLSD-VDCVRWHINCNYIATGSSD-----------KTVRL 531 (704)
Q Consensus 474 ~~~~l~sgs~d-----g~i~lwd~~~~~~~~~--~~~---~~~~-V~~v~~~p~~~~l~tgs~d-----------g~I~i 531 (704)
++++++.|+.+ ..+.+||..+.+-... +.. .... -.+++. -++++++.|+.+ ..+.+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~~ 163 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTIEA 163 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCcccceEEE
Confidence 56677777643 3577788776433221 100 0011 112222 345666666643 24778
Q ss_pred EeCCCCc
Q 005277 532 WDVSSGE 538 (704)
Q Consensus 532 wd~~~~~ 538 (704)
||..+..
T Consensus 164 yd~~~~~ 170 (341)
T PLN02153 164 YNIADGK 170 (341)
T ss_pred EECCCCe
Confidence 8887654
No 443
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.53 E-value=4.5 Score=46.47 Aligned_cols=142 Identities=10% Similarity=0.116 Sum_probs=91.5
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeE------Eee----------------cCCcCeeEEEEcC--CCCEEEEEeCCCeEE
Q 005277 433 GDFILSSSADTTIRLWSTKLNANLV------CYK----------------GHNYPVWDVQFNP--QGHYFASSSHDRTAR 488 (704)
Q Consensus 433 ~~~l~s~s~Dg~I~lwd~~~~~~~~------~~~----------------~h~~~V~~v~~sp--~~~~l~sgs~dg~i~ 488 (704)
..+|+.|. .+.|.||+.+.-.... .+. .....|.-|.... +...|+.|..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 56677766 5689999976432211 110 0112344444433 456788899999999
Q ss_pred EEECCC-------C-------------ceeEEeccCCCCeeEEEEc--CCCCEEEEEECCCcEEEEeCCCC--cE-EEEe
Q 005277 489 IWSMDR-------I-------------QPLRIMAGHLSDVDCVRWH--INCNYIATGSSDKTVRLWDVSSG--EC-VRIF 543 (704)
Q Consensus 489 lwd~~~-------~-------------~~~~~~~~~~~~V~~v~~~--p~~~~l~tgs~dg~I~iwd~~~~--~~-~~~~ 543 (704)
+|.+++ . +|...+. -...++++++| ...++||+++....|.||-+... +. ...-
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s 206 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS 206 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence 997632 0 1112222 33578899999 88899999999998988865432 11 1111
Q ss_pred ecCCCCEEEEEEecCC---C---EEEEEeCCCeEEEEeC
Q 005277 544 IGHRSMILSLAMSPDG---R---YMASGDEDGTIMMWDL 576 (704)
Q Consensus 544 ~~h~~~i~~l~~spdg---~---~l~sg~~dg~I~iwdl 576 (704)
..|...|.+|+|-++. . +|++++-.|.+.+|++
T Consensus 207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 1356678899998743 2 7888999999999887
No 444
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.31 E-value=8.2 Score=37.41 Aligned_cols=138 Identities=14% Similarity=0.249 Sum_probs=80.5
Q ss_pred CEEEEEeCCCeEEEEeCCCC--ceeEEeecCCcCeeEEEEcCCCCEEEEEeCC---C---eEEEE-ECC----CCceeE-
Q 005277 434 DFILSSSADTTIRLWSTKLN--ANLVCYKGHNYPVWDVQFNPQGHYFASSSHD---R---TARIW-SMD----RIQPLR- 499 (704)
Q Consensus 434 ~~l~s~s~Dg~I~lwd~~~~--~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~d---g---~i~lw-d~~----~~~~~~- 499 (704)
+.|+.+...+.|.+|++... .....+.. -+.|..+.++..|+|++|--.+ . .+|+| +++ ..++++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 45555466678999999833 34455553 4789999999999999986322 2 56665 222 123333
Q ss_pred EeccC---------------------CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcE-E-----EEee----cC--
Q 005277 500 IMAGH---------------------LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC-V-----RIFI----GH-- 546 (704)
Q Consensus 500 ~~~~~---------------------~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~-~-----~~~~----~h-- 546 (704)
.+.|| ..++.|++..|...-|++|+ ++++.+|.+..+.. . ..|. .|
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~ 186 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHID 186 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechhhhhheec
Confidence 22222 23567888888655566664 56788998764332 1 1111 11
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 005277 547 RSMILSLAMSPDGRYMASGDEDGTIMMWDL 576 (704)
Q Consensus 547 ~~~i~~l~~spdg~~l~sg~~dg~I~iwdl 576 (704)
+-.+..+++ .+.|+|..+. -.+++..+
T Consensus 187 ~~~p~~v~i--c~~yiA~~s~-~ev~Vlkl 213 (215)
T PF14761_consen 187 NFKPTQVAI--CEGYIAVMSD-LEVLVLKL 213 (215)
T ss_pred CceEEEEEE--EeeEEEEecC-CEEEEEEE
Confidence 112444555 3667776654 35666554
No 445
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=91.87 E-value=25 Score=39.28 Aligned_cols=117 Identities=17% Similarity=0.109 Sum_probs=66.9
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCC---CeeEEEEcCCCCEEEEEEC-------------CCcEEEE
Q 005277 469 VQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS---DVDCVRWHINCNYIATGSS-------------DKTVRLW 532 (704)
Q Consensus 469 v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~---~V~~v~~~p~~~~l~tgs~-------------dg~I~iw 532 (704)
+...++|.+++..+ +.+..+|+. ++.+..+..... .-..+..-|+|++|+.+.. .-.|..+
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev 229 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV 229 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence 67778898776655 788888885 445444432221 1245667799999998872 1236667
Q ss_pred eCCCCcEEEEee--cC----C---------------------CCEEEEEEec-CCCEEEEEeCCCeEEEEeCCCCeeeee
Q 005277 533 DVSSGECVRIFI--GH----R---------------------SMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVTP 584 (704)
Q Consensus 533 d~~~~~~~~~~~--~h----~---------------------~~i~~l~~sp-dg~~l~sg~~dg~I~iwdl~~~~~~~~ 584 (704)
| .+|+.+..+. .| . --+.++.+.+ ++.+|+++-.-..|...|.++++....
T Consensus 230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wi 308 (477)
T PF05935_consen 230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWI 308 (477)
T ss_dssp --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEE
T ss_pred C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEE
Confidence 7 7787776532 11 0 1378999999 666666666666899999899988877
Q ss_pred ecCCC
Q 005277 585 LMGHT 589 (704)
Q Consensus 585 ~~~h~ 589 (704)
+..|.
T Consensus 309 lg~~~ 313 (477)
T PF05935_consen 309 LGPPG 313 (477)
T ss_dssp ES-ST
T ss_pred eCCCC
Confidence 76665
No 446
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.54 E-value=7.8 Score=47.09 Aligned_cols=32 Identities=13% Similarity=0.203 Sum_probs=26.7
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 005277 351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAK 382 (704)
Q Consensus 351 ~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~ 382 (704)
......++|+|...++|.|+.+|.|+++....
T Consensus 35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCCcceeeccccceEEEEEecccEEEecccc
Confidence 34556788999999999999999999997543
No 447
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.31 E-value=4.9 Score=42.84 Aligned_cols=116 Identities=12% Similarity=0.164 Sum_probs=78.1
Q ss_pred CccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE----EeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCC-
Q 005277 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV----CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR- 494 (704)
Q Consensus 420 h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~----~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~- 494 (704)
..|+|.++.||+|++.|+.--.+++|.+++....+... ..+..+..|....|+.+ .-+|..+..| +-+|.+..
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence 45799999999999999999999999999985433322 22334556888999855 4566555444 55665543
Q ss_pred CceeEEeccCCCCeeEEEEcCCCCEEEEEE--CCCcEEEEeCCCC
Q 005277 495 IQPLRIMAGHLSDVDCVRWHINCNYIATGS--SDKTVRLWDVSSG 537 (704)
Q Consensus 495 ~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs--~dg~I~iwd~~~~ 537 (704)
.+.++....|...|.-..|+++.+.+.-++ ..+++.=+.++++
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 345666677888899999999877655443 3344434444433
No 448
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=91.24 E-value=23 Score=37.61 Aligned_cols=17 Identities=18% Similarity=0.188 Sum_probs=12.5
Q ss_pred EEEccCCcEEEEeecCC
Q 005277 686 LQFSRRNLLFAAGALSK 702 (704)
Q Consensus 686 l~fs~~g~~La~gs~dg 702 (704)
.+..-++.++++|+.+.
T Consensus 316 ~~~~~~~~iyv~GG~~~ 332 (346)
T TIGR03547 316 VSVSWNNGVLLIGGENS 332 (346)
T ss_pred EEEEcCCEEEEEeccCC
Confidence 34556888999998764
No 449
>PLN02193 nitrile-specifier protein
Probab=90.76 E-value=31 Score=38.40 Aligned_cols=105 Identities=8% Similarity=0.026 Sum_probs=52.6
Q ss_pred CCCEEEEEeCC-----CeEEEEECCCCceeEEecc----CCCCeeEEEEcCCCCEEEEEECCC-----cEEEEeCCCCcE
Q 005277 474 QGHYFASSSHD-----RTARIWSMDRIQPLRIMAG----HLSDVDCVRWHINCNYIATGSSDK-----TVRLWDVSSGEC 539 (704)
Q Consensus 474 ~~~~l~sgs~d-----g~i~lwd~~~~~~~~~~~~----~~~~V~~v~~~p~~~~l~tgs~dg-----~I~iwd~~~~~~ 539 (704)
++..++.|+.+ ..+..||+.+.+-...-.. ....-.+++. -++++++.|+.++ .+..||+.+.+-
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W 306 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKW 306 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEE
Confidence 56666777654 3577888876543221110 0011112222 2456666776543 467788776543
Q ss_pred EEEee-----cCCCCEEEEEEecCCCEEEEEeCC----CeEEEEeCCCCee
Q 005277 540 VRIFI-----GHRSMILSLAMSPDGRYMASGDED----GTIMMWDLASGRC 581 (704)
Q Consensus 540 ~~~~~-----~h~~~i~~l~~spdg~~l~sg~~d----g~I~iwdl~~~~~ 581 (704)
...-. ...... +++ .-+++.++.|+.+ ..+.+||+.+.+-
T Consensus 307 ~~~~~~~~~~~~R~~~-~~~-~~~gkiyviGG~~g~~~~dv~~yD~~t~~W 355 (470)
T PLN02193 307 FHCSTPGDSFSIRGGA-GLE-VVQGKVWVVYGFNGCEVDDVHYYDPVQDKW 355 (470)
T ss_pred EeCCCCCCCCCCCCCc-EEE-EECCcEEEEECCCCCccCceEEEECCCCEE
Confidence 22110 011111 122 2267777777755 3578888876543
No 450
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=90.75 E-value=20 Score=38.88 Aligned_cols=148 Identities=12% Similarity=0.088 Sum_probs=84.8
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCce----
Q 005277 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP---- 497 (704)
Q Consensus 422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~---- 497 (704)
+....+..++++.+++.+..-..++-||-....-...-......+..+.|.+++..++++ .+|.+ +|..+.+..
T Consensus 239 Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~~ 316 (398)
T PLN00033 239 GTFSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEEDF 316 (398)
T ss_pred cceeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCccccc
Confidence 345666778888877766654333344432111011122334568899999999877766 45554 344444431
Q ss_pred -eEEecc--CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEee---cCCCCEEEEEEecCCCEEEEEeCCCeE
Q 005277 498 -LRIMAG--HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI---GHRSMILSLAMSPDGRYMASGDEDGTI 571 (704)
Q Consensus 498 -~~~~~~--~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~---~h~~~i~~l~~spdg~~l~sg~~dg~I 571 (704)
...... ....+..+.|.+++..+++| ..|.+.... ..|+.-.... .-....+.+.|.++++.+++ +.+|.|
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~-G~~G~i 393 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVL-GNDGVL 393 (398)
T ss_pred ceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEE-eCCcEE
Confidence 222221 22358889998887766665 577666553 4454433322 22456889999877665554 567776
Q ss_pred EEE
Q 005277 572 MMW 574 (704)
Q Consensus 572 ~iw 574 (704)
.-|
T Consensus 394 l~~ 396 (398)
T PLN00033 394 LRY 396 (398)
T ss_pred EEe
Confidence 655
No 451
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=90.34 E-value=22 Score=36.04 Aligned_cols=151 Identities=16% Similarity=0.135 Sum_probs=95.5
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeec--CCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCce-
Q 005277 421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG--HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP- 497 (704)
Q Consensus 421 ~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~--h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~- 497 (704)
.+-+..+.++ +++...+.++.-++|.|+.+...-..... ..+--.++.. .|++..++..|.-+.+.|+.+.+.
T Consensus 86 ~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP 161 (370)
T COG5276 86 RDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSP 161 (370)
T ss_pred hhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCc
Confidence 3556677787 66777777888899999987655333221 1133344444 588988888777788888876432
Q ss_pred --eEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecC---CCCEEEEEEecCCCEEEEEeCCCeEE
Q 005277 498 --LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH---RSMILSLAMSPDGRYMASGDEDGTIM 572 (704)
Q Consensus 498 --~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h---~~~i~~l~~spdg~~l~sg~~dg~I~ 572 (704)
...+......-..++. .|++-..+..|+-+.+.|+.+..... +.+| ...+.++..+++-.+++..++ -+.
T Consensus 162 ~lagrya~~~~d~~~v~I--SGn~AYvA~~d~GL~ivDVSnp~sPv-li~~~n~g~g~~sv~vsdnr~y~vvy~e--gvl 236 (370)
T COG5276 162 QLAGRYALPGGDTHDVAI--SGNYAYVAWRDGGLTIVDVSNPHSPV-LIGSYNTGPGTYSVSVSDNRAYLVVYDE--GVL 236 (370)
T ss_pred eeeeeeccCCCCceeEEE--ecCeEEEEEeCCCeEEEEccCCCCCe-EEEEEecCCceEEEEecCCeeEEEEccc--ceE
Confidence 2233333333344544 47788888899999999997654322 2222 236788888877666655433 366
Q ss_pred EEeCCCCe
Q 005277 573 MWDLASGR 580 (704)
Q Consensus 573 iwdl~~~~ 580 (704)
+-|..+.+
T Consensus 237 ivd~s~~s 244 (370)
T COG5276 237 IVDVSGPS 244 (370)
T ss_pred EEecCCCC
Confidence 77766554
No 452
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=90.05 E-value=31 Score=37.17 Aligned_cols=53 Identities=9% Similarity=0.051 Sum_probs=25.3
Q ss_pred CCCEEEEEeCCC-----------eEEEEECCCCceeEEeccCCCCee-EEEEc-CCCCEEEEEECC
Q 005277 474 QGHYFASSSHDR-----------TARIWSMDRIQPLRIMAGHLSDVD-CVRWH-INCNYIATGSSD 526 (704)
Q Consensus 474 ~~~~l~sgs~dg-----------~i~lwd~~~~~~~~~~~~~~~~V~-~v~~~-p~~~~l~tgs~d 526 (704)
++..++.|+.+. .+..||..+.+-...-........ ..+.. -++.+.+.|+.+
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 566777776532 466778766432221110011111 11121 366777777754
No 453
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=89.72 E-value=51 Score=39.26 Aligned_cols=119 Identities=13% Similarity=0.194 Sum_probs=72.0
Q ss_pred cCCcCeeEEEEc---C----CCCEEEEEeCCCeEEEEECC------C---------CceeEEec---cCCCCeeEEEEcC
Q 005277 461 GHNYPVWDVQFN---P----QGHYFASSSHDRTARIWSMD------R---------IQPLRIMA---GHLSDVDCVRWHI 515 (704)
Q Consensus 461 ~h~~~V~~v~~s---p----~~~~l~sgs~dg~i~lwd~~------~---------~~~~~~~~---~~~~~V~~v~~~p 515 (704)
....||..|+|. . ...+|++-. ...+.|+... . ..++..+. -...+...|+|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 356788888888 2 224555554 3556666611 1 12333333 1234677899998
Q ss_pred -CCCEEEEEECCCcEEEEeCCCC-----cEEEEeecCCC----------CEEEEEEecCCCEEEEEeCCCeEEEEeCCCC
Q 005277 516 -NCNYIATGSSDKTVRLWDVSSG-----ECVRIFIGHRS----------MILSLAMSPDGRYMASGDEDGTIMMWDLASG 579 (704)
Q Consensus 516 -~~~~l~tgs~dg~I~iwd~~~~-----~~~~~~~~h~~----------~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~ 579 (704)
+...||+....|...|||+..+ ..++....+.+ ....+.|.++-..|++++. ..+.++|+.+.
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~ 234 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESN 234 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCC
Confidence 4578999999999999999211 11111112222 2346788877777776654 46888888876
Q ss_pred ee
Q 005277 580 RC 581 (704)
Q Consensus 580 ~~ 581 (704)
..
T Consensus 235 ~~ 236 (765)
T PF10214_consen 235 WQ 236 (765)
T ss_pred Cc
Confidence 54
No 454
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=89.24 E-value=1.4 Score=30.69 Aligned_cols=32 Identities=19% Similarity=0.323 Sum_probs=26.8
Q ss_pred CCEEEEEEecCC---CEEEEEeCCCeEEEEeCCCC
Q 005277 548 SMILSLAMSPDG---RYMASGDEDGTIMMWDLASG 579 (704)
Q Consensus 548 ~~i~~l~~spdg---~~l~sg~~dg~I~iwdl~~~ 579 (704)
+.|.++.|||.. .+|+.+-.-|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468999999854 58888888899999999953
No 455
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=89.24 E-value=13 Score=35.80 Aligned_cols=150 Identities=16% Similarity=0.116 Sum_probs=80.8
Q ss_pred CCCEEEEEeC--CCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEE-eCCCeEEEEECCCCceeEEeccCCCCe
Q 005277 432 LGDFILSSSA--DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS-SHDRTARIWSMDRIQPLRIMAGHLSDV 508 (704)
Q Consensus 432 ~~~~l~s~s~--Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sg-s~dg~i~lwd~~~~~~~~~~~~~~~~V 508 (704)
+|.++.+.+. ...|++||+.+++.+..-+-....+..=-...-|.+|..- -.+|....+|.++.+.+..+. ..+.=
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc
Confidence 3455555543 3469999999988776544221111110001113333322 257888899998887776654 23333
Q ss_pred eEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEee--cCCC---CEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeee
Q 005277 509 DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI--GHRS---MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583 (704)
Q Consensus 509 ~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~--~h~~---~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~ 583 (704)
..++ .++.-|+.++...+++.-|..+-....... .... .++.+.|- +|...|-.-.+..|...|..+|+.+.
T Consensus 134 WgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 134 WGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred eeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence 4444 455556666556667776765543332221 1111 23334443 56666555555566667777777665
Q ss_pred ee
Q 005277 584 PL 585 (704)
Q Consensus 584 ~~ 585 (704)
.+
T Consensus 211 wi 212 (262)
T COG3823 211 WI 212 (262)
T ss_pred EE
Confidence 44
No 456
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.93 E-value=4.8 Score=48.50 Aligned_cols=136 Identities=17% Similarity=0.303 Sum_probs=87.3
Q ss_pred eCCCeEEEEeCCCCceeEEeecCCcCeeEEEE--------cCCCCEEEEEeCCCeEEEEECCCCc---ee------EEec
Q 005277 440 SADTTIRLWSTKLNANLVCYKGHNYPVWDVQF--------NPQGHYFASSSHDRTARIWSMDRIQ---PL------RIMA 502 (704)
Q Consensus 440 s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~--------sp~~~~l~sgs~dg~i~lwd~~~~~---~~------~~~~ 502 (704)
+.|+.+.+|+.+++.....+.+-...|..|.. -|.=+++..-+.--.|.++-+.-.. .. ..+.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 45778999999998888888877777766653 2222333333333455555432110 11 1222
Q ss_pred cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC----CC---c-E----------------EEEee-cCCCCEEEEEEec
Q 005277 503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS----SG---E-C----------------VRIFI-GHRSMILSLAMSP 557 (704)
Q Consensus 503 ~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~----~~---~-~----------------~~~~~-~h~~~i~~l~~sp 557 (704)
.....|.|+....+|+.+++| .|| .+|.+. .| + | +..+. .+..+|..+++..
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred cCCceEEEEEeccCCcEEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence 345678999977888877776 566 444431 11 1 1 11123 5677999999998
Q ss_pred CCCEEEEEeCCCeEEEEeCCC
Q 005277 558 DGRYMASGDEDGTIMMWDLAS 578 (704)
Q Consensus 558 dg~~l~sg~~dg~I~iwdl~~ 578 (704)
.-..+.+-+..|+|.+||+..
T Consensus 253 SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 253 SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccceeeeeccCceEEEEEccC
Confidence 888999999999999999976
No 457
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.79 E-value=6.3 Score=42.81 Aligned_cols=98 Identities=16% Similarity=0.140 Sum_probs=56.7
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEE
Q 005277 421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI 500 (704)
Q Consensus 421 ~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~ 500 (704)
.-.|+.+..++.|..++-++.+|.+.++=.+.+..-..|......|.|=.++-+.. |++.+
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~-~ftss------------------ 163 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAER-FFTSS------------------ 163 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccce-eeccC------------------
Confidence 34688899999999999889999776654443444344443333344433332221 22211
Q ss_pred eccCCCCeeEEEEcCCC---CEEEEEECCCcEEEEeCCCCcEE
Q 005277 501 MAGHLSDVDCVRWHINC---NYIATGSSDKTVRLWDVSSGECV 540 (704)
Q Consensus 501 ~~~~~~~V~~v~~~p~~---~~l~tgs~dg~I~iwd~~~~~~~ 540 (704)
..-.+..++|||++ ..+..-+.|..||+||+.....+
T Consensus 164 ---~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 164 ---TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred ---CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence 01123456677754 56666667788888887654433
No 458
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=88.65 E-value=5.8 Score=42.90 Aligned_cols=138 Identities=16% Similarity=0.197 Sum_probs=86.2
Q ss_pred EEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCC-------CEEEEEECCCcEEEEeCCC-CcEEEEeecCCCC
Q 005277 478 FASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINC-------NYIATGSSDKTVRLWDVSS-GECVRIFIGHRSM 549 (704)
Q Consensus 478 l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~-------~~l~tgs~dg~I~iwd~~~-~~~~~~~~~h~~~ 549 (704)
+..|+....++-.|++.++.+.....|... -|.|.|.- ..-++|-++..|.-.|.+- |..+... .....
T Consensus 483 ~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~-esKdY 559 (776)
T COG5167 483 YLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV-ESKDY 559 (776)
T ss_pred EecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee-eehhc
Confidence 344556667788888899888888766543 67777742 2234566677777777763 3333222 12222
Q ss_pred EEEEEEec----CCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeE
Q 005277 550 ILSLAMSP----DGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTI 625 (704)
Q Consensus 550 i~~l~~sp----dg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (704)
++.-.||. ...++|+|+..|.|++||--.-+.-..+.+....|..+..
T Consensus 560 ~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idv---------------------------- 611 (776)
T COG5167 560 KTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDV---------------------------- 611 (776)
T ss_pred cccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEe----------------------------
Confidence 22222332 3458999999999999995443444445666677777776
Q ss_pred EeecccCCCCCEEEEEeCCCcEEEEeCC
Q 005277 626 IYFGCASCEGSLLASGSADCTVKLWDVT 653 (704)
Q Consensus 626 ~~~~~~s~~g~~lasgs~Dg~V~iWd~~ 653 (704)
+.+|.++++.+. ..+.+-|+.
T Consensus 612 ------ta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 612 ------TANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred ------ecCCcEEEEeec-ceEEEEecc
Confidence 778887766554 466666664
No 459
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=87.96 E-value=44 Score=36.24 Aligned_cols=140 Identities=14% Similarity=0.142 Sum_probs=76.9
Q ss_pred eeEEEEcCCCCEEEEEECCCcEEEEeCCCCcE--EEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCe-----
Q 005277 508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGEC--VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR----- 580 (704)
Q Consensus 508 V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~--~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~----- 580 (704)
...+...+++.++++|.....++-||- |.. ...-......++++.|.++|..++++ .+|.+. |....++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~ 316 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDF 316 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCccccc
Confidence 334556678877777754433344542 322 11222345578999999999887766 455543 3434443
Q ss_pred eeeeecC--CCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccc
Q 005277 581 CVTPLMG--HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKV 658 (704)
Q Consensus 581 ~~~~~~~--h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~ 658 (704)
....... -...+.++.+ .+++..+++| ..|.+.... ..++.
T Consensus 317 ~f~~~~~~~~~~~l~~v~~----------------------------------~~d~~~~a~G-~~G~v~~s~-D~G~t- 359 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGY----------------------------------RSKKEAWAAG-GSGILLRST-DGGKS- 359 (398)
T ss_pred ceeecccCCCCcceEEEEE----------------------------------cCCCcEEEEE-CCCcEEEeC-CCCcc-
Confidence 1222211 1134666666 6666655554 567666653 22211
Q ss_pred cccccccCccccccccccCCCCcCeEEEEEccCCcEEEEee
Q 005277 659 LKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 699 (704)
Q Consensus 659 ~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs 699 (704)
+.....-..-..+.+.+.|.+++..+++|.
T Consensus 360 -----------W~~~~~~~~~~~~ly~v~f~~~~~g~~~G~ 389 (398)
T PLN00033 360 -----------WKRDKGADNIAANLYSVKFFDDKKGFVLGN 389 (398)
T ss_pred -----------eeEccccCCCCcceeEEEEcCCCceEEEeC
Confidence 111111223346789999999888888764
No 460
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=87.62 E-value=1.6 Score=30.41 Aligned_cols=31 Identities=19% Similarity=0.389 Sum_probs=26.4
Q ss_pred CCEEEEEEcCC-C--CEEEEEeCCCcEEEEEccc
Q 005277 352 NGLNCASISQD-G--SLVAGGFSDSSLKVWDMAK 382 (704)
Q Consensus 352 ~~V~~~~fs~d-g--~~lasg~~dg~I~iwdl~~ 382 (704)
+.|.|+.|||+ + .+||..-..|.|.|+|+..
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 46899999985 4 5999998899999999873
No 461
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=87.62 E-value=18 Score=34.79 Aligned_cols=122 Identities=12% Similarity=0.175 Sum_probs=72.2
Q ss_pred eCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc--CCC---CeeEEEEc
Q 005277 440 SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG--HLS---DVDCVRWH 514 (704)
Q Consensus 440 s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~--~~~---~V~~v~~~ 514 (704)
-.+|.-..+|.++.+++..+. ..+.=|.++- ++.-++.++...+++.-|.++........- ... .++-+.|
T Consensus 108 w~egvaf~~d~~t~~~lg~~~-y~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~- 183 (262)
T COG3823 108 WKEGVAFKYDADTLEELGRFS-YEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW- 183 (262)
T ss_pred eccceeEEEChHHhhhhcccc-cCCcceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-
Confidence 357788889998888776654 3445566655 555577766666777777665443332221 111 2233344
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCcEEEEee------------cCCCCEEEEEEecCC-CEEEEE
Q 005277 515 INCNYIATGSSDKTVRLWDVSSGECVRIFI------------GHRSMILSLAMSPDG-RYMASG 565 (704)
Q Consensus 515 p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~------------~h~~~i~~l~~spdg-~~l~sg 565 (704)
-+|...|-.-.+..|...|..+|+.+..+. .|.+-.+.+++.|++ +++++|
T Consensus 184 VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 184 VDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred eccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 245555544455566666777777665442 244567889999977 555555
No 462
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=87.62 E-value=0.091 Score=55.87 Aligned_cols=147 Identities=12% Similarity=0.212 Sum_probs=101.1
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEE-EEeCCCeEEEEECCCCceeEE
Q 005277 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA-SSSHDRTARIWSMDRIQPLRI 500 (704)
Q Consensus 422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~-sgs~dg~i~lwd~~~~~~~~~ 500 (704)
..-....|-|.+.-++.++.+..+..||-. ++...... .++...+++|..++..++ .+-..+.+.+||+.+....+.
T Consensus 35 v~pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqL 112 (615)
T KOG2247|consen 35 VGPIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQL 112 (615)
T ss_pred cccceeeEecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHH
Confidence 334456788888778888888889899865 33322222 344556788887776544 445778999999976443322
Q ss_pred eccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeE
Q 005277 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTI 571 (704)
Q Consensus 501 ~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I 571 (704)
-.+....-.-+.|++....++.|...|.+.+++..+.+.+-..-.|...+++++|.+.+.. +.++.|..+
T Consensus 113 E~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~v-il~dcd~~L 182 (615)
T KOG2247|consen 113 ESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYV-ILCDCDNTL 182 (615)
T ss_pred hccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEeccccee-eecCcHHHH
Confidence 2222333333789999999999999999999998877766555458899999999987754 444444433
No 463
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=87.39 E-value=42 Score=35.94 Aligned_cols=106 Identities=16% Similarity=0.060 Sum_probs=64.8
Q ss_pred EEEEeCCCeEEEEECCCCceeEEeccC--CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCC-CCEEEEE
Q 005277 478 FASSSHDRTARIWSMDRIQPLRIMAGH--LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-SMILSLA 554 (704)
Q Consensus 478 l~sgs~dg~i~lwd~~~~~~~~~~~~~--~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-~~i~~l~ 554 (704)
+..+..+|.+.-.|.+++..+.....- ...+.+-.+..+|+ +++++.+|.++.+|.++|..+..+.... ..+..-.
T Consensus 71 v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~ 149 (370)
T COG1520 71 VYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPP 149 (370)
T ss_pred EEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecCc
Confidence 444467777777787777655433221 12222222223555 7888889999999999999988887655 1122222
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCCeeeeee
Q 005277 555 MSPDGRYMASGDEDGTIMMWDLASGRCVTPL 585 (704)
Q Consensus 555 ~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~ 585 (704)
.-.++ .+..++.+|.+...|..+|...-..
T Consensus 150 v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~ 179 (370)
T COG1520 150 VVGDG-TVYVGTDDGHLYALNADTGTLKWTY 179 (370)
T ss_pred EEcCc-EEEEecCCCeEEEEEccCCcEEEEE
Confidence 22233 3344447788888888888776554
No 464
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=87.19 E-value=37 Score=35.72 Aligned_cols=143 Identities=15% Similarity=0.215 Sum_probs=85.9
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCe------EEEEeCCCC----cee-----EEeecCCc--------CeeEEEEcCCCCE
Q 005277 421 SGPVYSASFSPLGDFILSSSADTT------IRLWSTKLN----ANL-----VCYKGHNY--------PVWDVQFNPQGHY 477 (704)
Q Consensus 421 ~~~V~~l~~sp~~~~l~s~s~Dg~------I~lwd~~~~----~~~-----~~~~~h~~--------~V~~v~~sp~~~~ 477 (704)
-+.+.+|.+.+++..+++.|.+|. +...++... ..+ ..++.-.+ ..-+|++.++|.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 367889999976666777777777 555555431 111 11111111 2347888778887
Q ss_pred EEEEeCC------CeEEEEECCCCceeEEec---------------cCCCCeeEEEEcCCCCEEEEEEC-----CC--c-
Q 005277 478 FASSSHD------RTARIWSMDRIQPLRIMA---------------GHLSDVDCVRWHINCNYIATGSS-----DK--T- 528 (704)
Q Consensus 478 l~sgs~d------g~i~lwd~~~~~~~~~~~---------------~~~~~V~~v~~~p~~~~l~tgs~-----dg--~- 528 (704)
+++.-.+ ..|..++.+ ++.+..+. .....+.+++++|+|+.|+++.. |+ .
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 7776666 778888876 44433331 13346789999999997766542 22 1
Q ss_pred ------EEEE--eCCC-CcEEEEe--ec-------CCCCEEEEEEecCCCEEEE
Q 005277 529 ------VRLW--DVSS-GECVRIF--IG-------HRSMILSLAMSPDGRYMAS 564 (704)
Q Consensus 529 ------I~iw--d~~~-~~~~~~~--~~-------h~~~i~~l~~spdg~~l~s 564 (704)
++++ |..+ +.....+ .- ....|+.+.+-+++++|+.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 4554 4444 3222222 11 3467888999999987765
No 465
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=87.13 E-value=4.7 Score=39.76 Aligned_cols=70 Identities=16% Similarity=0.249 Sum_probs=52.7
Q ss_pred EcCCCCEEEEEECCCcEEEEeCCCCcEEEEe-------e-------cCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 005277 513 WHINCNYIATGSSDKTVRLWDVSSGECVRIF-------I-------GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578 (704)
Q Consensus 513 ~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~-------~-------~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~ 578 (704)
+..+++++++-+.+|.+++||+.+++++..- . .....|..+.++.+|.-|++-+ +|..+.|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 4467889999999999999999998765422 1 2456788999998888777654 57889998765
Q ss_pred Ceeee
Q 005277 579 GRCVT 583 (704)
Q Consensus 579 ~~~~~ 583 (704)
+.-+.
T Consensus 97 ~~W~~ 101 (219)
T PF07569_consen 97 GCWIR 101 (219)
T ss_pred ceeEE
Confidence 54433
No 466
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.98 E-value=9.2 Score=40.90 Aligned_cols=136 Identities=9% Similarity=0.085 Sum_probs=85.6
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCce--eEEe-ecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEE--
Q 005277 426 SASFSPLGDFILSSSADTTIRLWSTKLNAN--LVCY-KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI-- 500 (704)
Q Consensus 426 ~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~--~~~~-~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~-- 500 (704)
.+-|...++.|+ |...|.+.-|-+..... ...+ ....++|.+|.|++|.+.+|+--.+++|.+++....++...
T Consensus 27 gvFfDDaNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~ 105 (657)
T KOG2377|consen 27 GVFFDDANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT 105 (657)
T ss_pred ceeeccCcceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH
Confidence 444543344443 33344566665543321 1222 23467999999999999999999999999999844333222
Q ss_pred --eccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC-CcEEEEeecCCCCEEEEEEecCCCEEEE
Q 005277 501 --MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-GECVRIFIGHRSMILSLAMSPDGRYMAS 564 (704)
Q Consensus 501 --~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~-~~~~~~~~~h~~~i~~l~~spdg~~l~s 564 (704)
.+.....|....|..+. -+|.-+.. .+-+|.+.. .+.++..+.|+..|.-..|.++.+.+.-
T Consensus 106 ~~ck~k~~~IlGF~W~~s~-e~A~i~~~-G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL 170 (657)
T KOG2377|consen 106 QECKTKNANILGFCWTSST-EIAFITDQ-GIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILL 170 (657)
T ss_pred HHhccCcceeEEEEEecCe-eEEEEecC-CeEEEEEchhhhhhhhhhhcccCccEEEEccccceEee
Confidence 22334568899998774 45554433 366666543 3456667778888888889888775443
No 467
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=86.94 E-value=43 Score=35.07 Aligned_cols=106 Identities=5% Similarity=0.070 Sum_probs=51.8
Q ss_pred CCCEEEEEeCC-----CeEEEEECCCCce---eEEeccCCCCe--eEEEEcCCCCEEEEEEC-----CCcEEEEeCCCCc
Q 005277 474 QGHYFASSSHD-----RTARIWSMDRIQP---LRIMAGHLSDV--DCVRWHINCNYIATGSS-----DKTVRLWDVSSGE 538 (704)
Q Consensus 474 ~~~~l~sgs~d-----g~i~lwd~~~~~~---~~~~~~~~~~V--~~v~~~p~~~~l~tgs~-----dg~I~iwd~~~~~ 538 (704)
++..++.|+.+ ..+..+|+.+... ...+..-..+. .+++. -++.+.+.|+. ...+..||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 56677777754 3466667665442 11221111111 12222 24566666664 2458888987665
Q ss_pred EEEEee-cCCCCEEEEEEecCCCEEEEEeCCCe----EEEEeCCCCe
Q 005277 539 CVRIFI-GHRSMILSLAMSPDGRYMASGDEDGT----IMMWDLASGR 580 (704)
Q Consensus 539 ~~~~~~-~h~~~i~~l~~spdg~~l~sg~~dg~----I~iwdl~~~~ 580 (704)
-...-. .........+...++++.+.|+.++. +.+||+.+.+
T Consensus 151 W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 151 WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred eeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 332111 11112222333346777777776542 4567776543
No 468
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=86.15 E-value=44 Score=34.44 Aligned_cols=60 Identities=10% Similarity=0.113 Sum_probs=39.1
Q ss_pred eEEEEECCCCceeEEecc------CCCCeeEEEEcCCC-----CEEEEEE-CCCcEEEEeCCCCcEEEEeec
Q 005277 486 TARIWSMDRIQPLRIMAG------HLSDVDCVRWHINC-----NYIATGS-SDKTVRLWDVSSGECVRIFIG 545 (704)
Q Consensus 486 ~i~lwd~~~~~~~~~~~~------~~~~V~~v~~~p~~-----~~l~tgs-~dg~I~iwd~~~~~~~~~~~~ 545 (704)
.|.+||+.+.+.++.+.- ..+.+..+.+.... .++..+. ..+.|.++|+.+++..+....
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~ 106 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHN 106 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETC
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecC
Confidence 677788888887776642 23456667776522 2444433 346799999999988776643
No 469
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=85.55 E-value=0.13 Score=54.69 Aligned_cols=135 Identities=12% Similarity=0.119 Sum_probs=91.3
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEE
Q 005277 357 ASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFI 436 (704)
Q Consensus 357 ~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l 436 (704)
..|-+.+.-++.++.+-.|..||-.+. ...-...++....++|..+++.+
T Consensus 40 ~~w~~e~~nlavaca~tiv~~YD~agq------------------------------~~le~n~tg~aldm~wDkegdvl 89 (615)
T KOG2247|consen 40 HRWRPEGHNLAVACANTIVIYYDKAGQ------------------------------VILELNPTGKALDMAWDKEGDVL 89 (615)
T ss_pred eeEecCCCceehhhhhhHHHhhhhhcc------------------------------eecccCCchhHhhhhhccccchh
Confidence 345666656888888888888885431 01111234566778888887754
Q ss_pred E-EEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcC
Q 005277 437 L-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHI 515 (704)
Q Consensus 437 ~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p 515 (704)
+ .+-..+.+.+|++.+......-.+.+..-.-+.|++.+..++.+...|.+.+++..+.+.+-....|...+.+++|.+
T Consensus 90 avlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l 169 (615)
T KOG2247|consen 90 AVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL 169 (615)
T ss_pred hhhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecc
Confidence 4 566778999999985432211111111222278999888899999999999999988766665555999999999988
Q ss_pred CCCEEE
Q 005277 516 NCNYIA 521 (704)
Q Consensus 516 ~~~~l~ 521 (704)
.+..+.
T Consensus 170 Ed~vil 175 (615)
T KOG2247|consen 170 EDYVIL 175 (615)
T ss_pred cceeee
Confidence 764443
No 470
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.19 E-value=3.9 Score=42.87 Aligned_cols=122 Identities=19% Similarity=0.280 Sum_probs=84.1
Q ss_pred hHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCCCCCCCCCCCCch-hhhccccccccccCChhhHHHHHHHHHHHHhhc
Q 005277 3 ELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDP-ELSKFFRTFSESEDGPARYQDEYSKLRSWTYSS 81 (704)
Q Consensus 3 ~~~~~~~v~~yl~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 81 (704)
.+.++.|+..++-+.|-.+.-..|.+|+....... ... .+- ++...+......+..| ..+|+.+.
T Consensus 116 ~~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~--~~~---~~F~el~~Iv~~lke~Dl~~---------aLeWa~~~ 181 (394)
T KOG2817|consen 116 SQVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDES--KSR---TEFVELNQIVEALKERDLEP---------ALEWAESN 181 (394)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcch--hhh---hhHHHHHHHHHHHHhccchh---------HHHHHHHh
Confidence 44579999999999999999999999997754200 000 000 0001111111112222 35788887
Q ss_pred cccchhhhhhhhHHHHHHHHHHHHhcCCHH--HHHHHHHHhhhhHHhhhHHHHHHHhcC
Q 005277 82 LDLYKHELLHVLYPVFIHCFMDLVAKGHIQ--EARTFFNNFREDHEMMHLRDLQKLEGV 138 (704)
Q Consensus 82 ld~~k~el~~~l~p~f~~~~l~l~~~~~~~--~a~~f~~~~~~~~~~~~~~~~~~l~~~ 138 (704)
-+..+.+=+.|=|=++-+-|++++..|..+ +|-.+-.++-.-|...|..||+.+...
T Consensus 182 ~~~L~~~~s~LE~~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQklm~s 240 (394)
T KOG2817|consen 182 RQKLKEKSSSLEFKLHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKLMGS 240 (394)
T ss_pred hhhhccccccHHHHHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHHHHH
Confidence 777777667777888999999999999988 998888888777877788899987553
No 471
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=83.93 E-value=9.4 Score=36.06 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=25.5
Q ss_pred cCeEEEEEcCCC------CEEEEEeCCCeEEEEeCCC
Q 005277 422 GPVYSASFSPLG------DFILSSSADTTIRLWSTKL 452 (704)
Q Consensus 422 ~~V~~l~~sp~~------~~l~s~s~Dg~I~lwd~~~ 452 (704)
..|.+++|||.| ..|++.+.+|.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 479999999955 3688889999999998663
No 472
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=83.57 E-value=63 Score=34.01 Aligned_cols=102 Identities=19% Similarity=0.280 Sum_probs=62.6
Q ss_pred cCeeEEEEcCCCCEEEEEeCCCe------EEEEECCC----CceeEE-----eccC--------CCCeeEEEEcCCCCEE
Q 005277 464 YPVWDVQFNPQGHYFASSSHDRT------ARIWSMDR----IQPLRI-----MAGH--------LSDVDCVRWHINCNYI 520 (704)
Q Consensus 464 ~~V~~v~~sp~~~~l~sgs~dg~------i~lwd~~~----~~~~~~-----~~~~--------~~~V~~v~~~p~~~~l 520 (704)
+.+..+.+.+++..+++.+.+|. +..+++.. ...+.. +... .-+..+|++.+++.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 45677888865556666666666 55555433 111111 1111 1155678887788777
Q ss_pred EEEECC------CcEEEEeCCCCcEEEEee---------------cCCCCEEEEEEecCCCEEEEEe
Q 005277 521 ATGSSD------KTVRLWDVSSGECVRIFI---------------GHRSMILSLAMSPDGRYMASGD 566 (704)
Q Consensus 521 ~tgs~d------g~I~iwd~~~~~~~~~~~---------------~h~~~i~~l~~spdg~~l~sg~ 566 (704)
++.-.+ ..|+.++.. |+....+. ..+...-+|+++|+|+.|+++.
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 776666 778888866 66544431 1344688999999999776654
No 473
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=83.41 E-value=36 Score=34.89 Aligned_cols=112 Identities=16% Similarity=0.251 Sum_probs=72.1
Q ss_pred CeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEE------CCCcEEEEeCCCCcEEEEeec-----CCCCEEEE
Q 005277 485 RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS------SDKTVRLWDVSSGECVRIFIG-----HRSMILSL 553 (704)
Q Consensus 485 g~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs------~dg~I~iwd~~~~~~~~~~~~-----h~~~i~~l 553 (704)
..|++||..+.+-...-.+-.+.|..+.|..+.+.++.|. ....+..||..+..- ..+.+ -.++|..+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEEEE
Confidence 4699999988766555555667899999986666776664 355688899876643 22333 13678888
Q ss_pred EEec-CCC-EEEEEe---CCCeEEEEeCCCCeeeee-ecCCCceeeeeee
Q 005277 554 AMSP-DGR-YMASGD---EDGTIMMWDLASGRCVTP-LMGHTSCVWTLAY 597 (704)
Q Consensus 554 ~~sp-dg~-~l~sg~---~dg~I~iwdl~~~~~~~~-~~~h~~~V~sl~~ 597 (704)
.+.. |+. +.++|. .+..|..||=.+...+.. .......|..+.+
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~ 144 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQV 144 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEE
Confidence 7754 333 333333 234577787666666555 3334567777766
No 474
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=83.29 E-value=7.7 Score=38.26 Aligned_cols=28 Identities=25% Similarity=0.691 Sum_probs=24.2
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCCeee
Q 005277 555 MSPDGRYMASGDEDGTIMMWDLASGRCV 582 (704)
Q Consensus 555 ~spdg~~l~sg~~dg~I~iwdl~~~~~~ 582 (704)
+..++.+|++-+.+|.+++||+.+++.+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~ 45 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAV 45 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeec
Confidence 4457899999999999999999988764
No 475
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=83.11 E-value=34 Score=36.72 Aligned_cols=160 Identities=15% Similarity=0.082 Sum_probs=93.0
Q ss_pred CCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCcee-EEec-cCCCC----ee-EEEEcCCCCEEEEEECCCcEEEE-e
Q 005277 462 HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL-RIMA-GHLSD----VD-CVRWHINCNYIATGSSDKTVRLW-D 533 (704)
Q Consensus 462 h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~-~~~~-~~~~~----V~-~v~~~p~~~~l~tgs~dg~I~iw-d 533 (704)
...+|..+-..|+|+.+..-+. ..+.++++.+.... +.+. ...++ |+ .+..-..|.-+.+++.||.|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeee
Confidence 3456778889999998877665 78899988764321 1111 11111 22 11122356678888999998877 6
Q ss_pred CCCCc-----EEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehcccccc
Q 005277 534 VSSGE-----CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYL 608 (704)
Q Consensus 534 ~~~~~-----~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~ 608 (704)
++.+. .++.++-....+..+.-..+.+-+++-...|++.++.-...+.+-.-.... ...-+++
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~-~~~~~~~----------- 365 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQ-APQLVAM----------- 365 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhc-Ccceeee-----------
Confidence 65432 223332222334433333344567777778888877654443332221111 2333444
Q ss_pred ccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccc
Q 005277 609 KISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKV 658 (704)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~ 658 (704)
||.+.++++-. .|.++++.+++....
T Consensus 366 -----------------------Sp~~~~Ll~e~-~gki~~~~l~Nr~Pe 391 (733)
T COG4590 366 -----------------------SPNQAYLLSED-QGKIRLAQLENRNPE 391 (733)
T ss_pred -----------------------Ccccchheeec-CCceEEEEecCCCCC
Confidence 88888887764 478999999886653
No 476
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=83.05 E-value=60 Score=33.44 Aligned_cols=154 Identities=14% Similarity=0.214 Sum_probs=88.5
Q ss_pred CeEEEEEcCCCCEEE--EEeCC----------CeEEEEeCCCCceeEEeecC------CcCeeEEEEcCCC-----CEE-
Q 005277 423 PVYSASFSPLGDFIL--SSSAD----------TTIRLWSTKLNANLVCYKGH------NYPVWDVQFNPQG-----HYF- 478 (704)
Q Consensus 423 ~V~~l~~sp~~~~l~--s~s~D----------g~I~lwd~~~~~~~~~~~~h------~~~V~~v~~sp~~-----~~l- 478 (704)
.|+.+...+++++-+ +|..+ -.|.+||+.+++.++++.-. .+.+.++.+.... .++
T Consensus 2 sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY 81 (287)
T PF03022_consen 2 SVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY 81 (287)
T ss_dssp -EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Confidence 367777777776433 34211 26889999999988877532 4556777776622 233
Q ss_pred EEEeCCCeEEEEECCCCceeEEeccCCC-------------------CeeEEEEcC---CCCEEEEEECCCcEEEEeCCC
Q 005277 479 ASSSHDRTARIWSMDRIQPLRIMAGHLS-------------------DVDCVRWHI---NCNYIATGSSDKTVRLWDVSS 536 (704)
Q Consensus 479 ~sgs~dg~i~lwd~~~~~~~~~~~~~~~-------------------~V~~v~~~p---~~~~l~tgs~dg~I~iwd~~~ 536 (704)
++=+..+-+.++|+.+++..+....+.. .+..++.+| ++++|..+...+ -++|.+.+
T Consensus 82 ItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T 160 (287)
T PF03022_consen 82 ITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPT 160 (287)
T ss_dssp EEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEH
T ss_pred EeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEH
Confidence 3334556899999998877666543221 234444443 444555444322 12232211
Q ss_pred -----C---------cEEEEeecCC-CCEEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 005277 537 -----G---------ECVRIFIGHR-SMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578 (704)
Q Consensus 537 -----~---------~~~~~~~~h~-~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~ 578 (704)
. ..+..+ +.. .....++++++|..+++--..+.|..|+..+
T Consensus 161 ~~L~~~~~~~~~~~~~~v~~l-G~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~ 216 (287)
T PF03022_consen 161 SVLRDPSLSDAQALASQVQDL-GDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDG 216 (287)
T ss_dssp HHHCSTT--HHH-HHHT-EEE-EE---SECEEEEETTTEEEEEECCCTEEEEEETTT
T ss_pred HHhhCccccccccccccceec-cccCCCCceEEECCCCcEEEecCCCCeEEEEeCCC
Confidence 1 111222 222 3567789999999999999999999999876
No 477
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.90 E-value=12 Score=45.33 Aligned_cols=92 Identities=16% Similarity=0.226 Sum_probs=56.3
Q ss_pred eCCCeEEEEECCCCceeEEeccCCCCeeEEEE--------cCCCCEEEEEECCCcEEEEeCC----CCcEE-----EEee
Q 005277 482 SHDRTARIWSMDRIQPLRIMAGHLSDVDCVRW--------HINCNYIATGSSDKTVRLWDVS----SGECV-----RIFI 544 (704)
Q Consensus 482 s~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~--------~p~~~~l~tgs~dg~I~iwd~~----~~~~~-----~~~~ 544 (704)
+.|+.+.+|+.+++.....+.+-...|..|.. -|.=+++++-+.--.|.++-+. ++..- ..+.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 45789999999998777777776666666543 2333455544445556666442 21110 1122
Q ss_pred cCCCCEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 005277 545 GHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576 (704)
Q Consensus 545 ~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl 576 (704)
.....|+|+....+|+.+++|- || .+|.+
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl 204 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGR-DG--NLYEL 204 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeec-CC--CEEEE
Confidence 2355789999888898777664 55 45543
No 478
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=82.75 E-value=57 Score=32.94 Aligned_cols=154 Identities=12% Similarity=0.128 Sum_probs=99.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEE--
Q 005277 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI-- 500 (704)
Q Consensus 423 ~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~-- 500 (704)
.-+.++-.|||..-+++...+.|--.|-.+++....-.+....-..|...|+|..-++-+.. -|.-.|-++.+..+.
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~l 141 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPL 141 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeec
Confidence 34677888999888888888888888988888766655666667788888988765554433 455555544432221
Q ss_pred -eccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeec-CCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 005277 501 -MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG-HRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578 (704)
Q Consensus 501 -~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~-h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~ 578 (704)
............|.+.|++-+++.. |.---.|-. ...+++|.. .....+.|+..|+|..-++.-.+..|-..|..+
T Consensus 142 p~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa-~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~ 219 (353)
T COG4257 142 PLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPA-RNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFA 219 (353)
T ss_pred ccccCCCcccceeeCCCccEEEeecc-ccceecCcc-cCceeeeccCCCCCCcceEECCCCcEEEEeccccceEEccccc
Confidence 1223456778889999998888752 211111211 122333332 223567789999999888776777777777766
Q ss_pred C
Q 005277 579 G 579 (704)
Q Consensus 579 ~ 579 (704)
+
T Consensus 220 ~ 220 (353)
T COG4257 220 G 220 (353)
T ss_pred C
Confidence 5
No 479
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=82.56 E-value=87 Score=34.94 Aligned_cols=150 Identities=16% Similarity=0.149 Sum_probs=75.5
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcC---eeEEEEcCCCCEEEEEeC-------------CCeEEEE
Q 005277 427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYP---VWDVQFNPQGHYFASSSH-------------DRTARIW 490 (704)
Q Consensus 427 l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~---V~~v~~sp~~~~l~sgs~-------------dg~i~lw 490 (704)
+...++|.+++..+ ..+..+|+. |+.+..+...... =.++.+.|+|++|+.+.. .-.|..+
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev 229 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV 229 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence 56678888776555 678888886 6665555432211 356888899999888771 1124444
Q ss_pred ECCCCceeEEec--cCC-------------------------CCeeEEEEcCCCCEEEEEEC-CCcEEEEeCCCCcEEEE
Q 005277 491 SMDRIQPLRIMA--GHL-------------------------SDVDCVRWHINCNYIATGSS-DKTVRLWDVSSGECVRI 542 (704)
Q Consensus 491 d~~~~~~~~~~~--~~~-------------------------~~V~~v~~~p~~~~l~tgs~-dg~I~iwd~~~~~~~~~ 542 (704)
| .+++.+..+. .|. -.++++.+.+..+.|+..+. -..|...|.++++....
T Consensus 230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wi 308 (477)
T PF05935_consen 230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWI 308 (477)
T ss_dssp --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEE
T ss_pred C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEE
Confidence 4 4454443321 110 13778999985555555555 45899999999988887
Q ss_pred eecCCCCEE---EEEEec------------------CCCEEEEEeCCC---eEEEEeCCCCe
Q 005277 543 FIGHRSMIL---SLAMSP------------------DGRYMASGDEDG---TIMMWDLASGR 580 (704)
Q Consensus 543 ~~~h~~~i~---~l~~sp------------------dg~~l~sg~~dg---~I~iwdl~~~~ 580 (704)
+-.+.+.-. ...+.| .|++-+.--.+| .|.++|=..++
T Consensus 309 lg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~~~gQH~~~~~~~g~~~~l~vFDNg~~r 370 (477)
T PF05935_consen 309 LGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDWFWGQHTAHLIPDGPQGNLLVFDNGNGR 370 (477)
T ss_dssp ES-STT--TTTGGGB-EEB-TTS-B-EBSSSS----SS-EEEEE-TTS---SEEEEE--TTG
T ss_pred eCCCCCCCcccchheeeeeccCCceeeccCCCCcccccccceEEcCCCCeEEEEEEECCCCC
Confidence 755533111 001111 245555556677 88888855443
No 480
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.52 E-value=28 Score=38.06 Aligned_cols=98 Identities=12% Similarity=0.035 Sum_probs=54.6
Q ss_pred CEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEee
Q 005277 549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYF 628 (704)
Q Consensus 549 ~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (704)
.|..+..++.|..++-.|.+|.+.++=.+..-+-..+......|.|-.+... ..-+...+...+-.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~--------------~~~ftss~~ltl~Q 170 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVA--------------ERFFTSSTSLTLKQ 170 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeeccc--------------ceeeccCCceeeee
Confidence 4677888999999999999996655432322222233333333433332100 00000011112222
Q ss_pred cccCCCC---CEEEEEeCCCcEEEEeCCCCccccc
Q 005277 629 GCASCEG---SLLASGSADCTVKLWDVTTSTKVLK 660 (704)
Q Consensus 629 ~~~s~~g---~~lasgs~Dg~V~iWd~~~~~~~~~ 660 (704)
+.++|++ ..|..-+.|++||+||......+..
T Consensus 171 a~WHP~S~~D~hL~iL~sdnviRiy~lS~~telyl 205 (741)
T KOG4460|consen 171 AAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYL 205 (741)
T ss_pred ccccCCccCCceEEEEecCcEEEEEecCCcchhhc
Confidence 3336654 6788888899999999988766533
No 481
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=82.17 E-value=25 Score=36.02 Aligned_cols=71 Identities=14% Similarity=0.236 Sum_probs=47.3
Q ss_pred CCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEe------CCCeEEEEeCCCCeeeeeecC-----CCceeee
Q 005277 526 DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD------EDGTIMMWDLASGRCVTPLMG-----HTSCVWT 594 (704)
Q Consensus 526 dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~------~dg~I~iwdl~~~~~~~~~~~-----h~~~V~s 594 (704)
-..|++||..+.+-...-.+-.+.|+++.|..+.+.+++|. ....+..||+.+.... .+.+ -.++|..
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGPVTA 93 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCcEEE
Confidence 34599999887766555555668899999986666666664 4567888998766432 2222 1356666
Q ss_pred eee
Q 005277 595 LAY 597 (704)
Q Consensus 595 l~~ 597 (704)
+.+
T Consensus 94 ~~~ 96 (281)
T PF12768_consen 94 LTF 96 (281)
T ss_pred EEe
Confidence 655
No 482
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=81.12 E-value=5.3 Score=42.55 Aligned_cols=166 Identities=16% Similarity=0.109 Sum_probs=100.6
Q ss_pred eccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee-EEe-ecCC----cCee-EEEEcCCCCEEEEEeCCCeEE
Q 005277 416 LYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL-VCY-KGHN----YPVW-DVQFNPQGHYFASSSHDRTAR 488 (704)
Q Consensus 416 ~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~-~~~-~~h~----~~V~-~v~~sp~~~~l~sgs~dg~i~ 488 (704)
.+..-...|..+-..|||+.|..-+. .++.++++...... ..+ .... ..|+ .+..-..|..+.+++.||-|.
T Consensus 215 ~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vs 293 (733)
T COG4590 215 LLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVS 293 (733)
T ss_pred hcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCcee
Confidence 34455677888999999998886665 57888888754321 111 1101 1122 222233566688888999988
Q ss_pred EE-ECCCC-c----eeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEE
Q 005277 489 IW-SMDRI-Q----PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYM 562 (704)
Q Consensus 489 lw-d~~~~-~----~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l 562 (704)
-| |.+.. + .++.+.-....+..+.-..+.+-+++-+.+|++.++.....+.+- +..--..+.-+++||++.+|
T Consensus 294 QWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL-~~~~~~~~~~~~~Sp~~~~L 372 (733)
T COG4590 294 QWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL-FERAYQAPQLVAMSPNQAYL 372 (733)
T ss_pred eeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCccee-hhhhhcCcceeeeCcccchh
Confidence 87 44332 1 233333333444444333345567777788888888765554443 22223366778999999998
Q ss_pred EEEeCCCeEEEEeCCCCeeeee
Q 005277 563 ASGDEDGTIMMWDLASGRCVTP 584 (704)
Q Consensus 563 ~sg~~dg~I~iwdl~~~~~~~~ 584 (704)
++-. .|.|+++.+.+..+--+
T Consensus 373 l~e~-~gki~~~~l~Nr~Peis 393 (733)
T COG4590 373 LSED-QGKIRLAQLENRNPEIS 393 (733)
T ss_pred eeec-CCceEEEEecCCCCCcc
Confidence 8754 46799998877654433
No 483
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=80.70 E-value=9.1 Score=36.16 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=24.9
Q ss_pred CCeeEEEEcCCC------CEEEEEECCCcEEEEeCC
Q 005277 506 SDVDCVRWHINC------NYIATGSSDKTVRLWDVS 535 (704)
Q Consensus 506 ~~V~~v~~~p~~------~~l~tgs~dg~I~iwd~~ 535 (704)
..|..++|+|.| .+|++-+.+|.|.||.-.
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 478999999954 578888999999999765
No 484
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=80.54 E-value=75 Score=33.22 Aligned_cols=65 Identities=8% Similarity=0.203 Sum_probs=35.0
Q ss_pred CCCEEEEEeC-----CCeEEEEECCCCceeEE--eccCCCCeeEEEEcCCCCEEEEEECCC----cEEEEeCCCCcE
Q 005277 474 QGHYFASSSH-----DRTARIWSMDRIQPLRI--MAGHLSDVDCVRWHINCNYIATGSSDK----TVRLWDVSSGEC 539 (704)
Q Consensus 474 ~~~~l~sgs~-----dg~i~lwd~~~~~~~~~--~~~~~~~V~~v~~~p~~~~l~tgs~dg----~I~iwd~~~~~~ 539 (704)
+++.++.|+. ...+..||+.+.+-... +.. .......+...++++.+.|+.++ .+..||..+.+-
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCC-CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 5667777764 24577788776543221 111 11112222234567777777654 356888877653
No 485
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=80.40 E-value=87 Score=33.53 Aligned_cols=135 Identities=16% Similarity=0.181 Sum_probs=82.1
Q ss_pred CeEEEEeCCCC-ceeEEeecC-------CcCeeEEEE--cC-CCC-EEEEEeCCCeEEEEECC---CC----ceeEEecc
Q 005277 443 TTIRLWSTKLN-ANLVCYKGH-------NYPVWDVQF--NP-QGH-YFASSSHDRTARIWSMD---RI----QPLRIMAG 503 (704)
Q Consensus 443 g~I~lwd~~~~-~~~~~~~~h-------~~~V~~v~~--sp-~~~-~l~sgs~dg~i~lwd~~---~~----~~~~~~~~ 503 (704)
.+|++|.+... ..+..+... ...+..+|+ +| +|. +++....+|.+.-|-+. .+ +.++.|..
T Consensus 127 n~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~ 206 (381)
T PF02333_consen 127 NSLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV 206 (381)
T ss_dssp -EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-
T ss_pred CeEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC
Confidence 47999987632 223333211 123566776 34 454 56667788988888764 22 35677764
Q ss_pred CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC-----CcEEEEeec--CCCCEEEEEEec--CC--CEEEEEeCCCeEE
Q 005277 504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-----GECVRIFIG--HRSMILSLAMSP--DG--RYMASGDEDGTIM 572 (704)
Q Consensus 504 ~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~-----~~~~~~~~~--h~~~i~~l~~sp--dg--~~l~sg~~dg~I~ 572 (704)
.+.+..|.......+|+.|-.+.-|+-|+... +..+....+ ....|-.|++-. +| .+|++.-.+++..
T Consensus 207 -~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~ 285 (381)
T PF02333_consen 207 -GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFA 285 (381)
T ss_dssp -SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEE
T ss_pred -CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEE
Confidence 45788888888888999999998888888762 222322222 345677777753 33 3555666788999
Q ss_pred EEeCCC
Q 005277 573 MWDLAS 578 (704)
Q Consensus 573 iwdl~~ 578 (704)
|||...
T Consensus 286 Vy~r~~ 291 (381)
T PF02333_consen 286 VYDREG 291 (381)
T ss_dssp EEESST
T ss_pred EEecCC
Confidence 999764
No 486
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=80.16 E-value=68 Score=35.10 Aligned_cols=31 Identities=32% Similarity=0.669 Sum_probs=25.4
Q ss_pred CCEEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 005277 548 SMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578 (704)
Q Consensus 548 ~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~ 578 (704)
..|.+++..+..+.|++...+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 4489999999889999999999999999974
No 487
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=79.79 E-value=52 Score=37.97 Aligned_cols=223 Identities=14% Similarity=0.118 Sum_probs=103.5
Q ss_pred CeEeecCCCCCCeEEE-EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCC
Q 005277 330 NRVHLSSAALPSVSFY-TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (704)
Q Consensus 330 ~~~~l~~~~~p~~~~~-~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (704)
+.+++...+.|.-..+ ..-+-.++|...+||.|.+.++.-..+..|.+++-.-.. ....... ..+.......+..
T Consensus 90 Dii~~~~dp~p~e~~~eivG~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k~fd~-ise~~L~--~~dl~ef~khi~V- 165 (1243)
T COG5290 90 DIIHLVNDPTPAELEMEIVGKVSNGIVAASWSADEKTWCVVTSTREILLFDKYFDP-ISEYHLK--KSDLVEFGKHIRV- 165 (1243)
T ss_pred cEEEEEcCCCcccchhhhhccccCceEEEeeccCCceEEEEEcCceEEEEeccccc-cchhhcc--hhHHHHhccceEe-
Confidence 3444444444533322 334557899999999999988888888888888743210 0000000 0000000000000
Q ss_pred CCccceeeccC----------------CccCe-------EEEEEcCCCCEEEEEeCC----CeEEEEeCCCCceeEEeec
Q 005277 409 GRKRSYTLYQG----------------HSGPV-------YSASFSPLGDFILSSSAD----TTIRLWSTKLNANLVCYKG 461 (704)
Q Consensus 409 ~~~~~~~~~~~----------------h~~~V-------~~l~~sp~~~~l~s~s~D----g~I~lwd~~~~~~~~~~~~ 461 (704)
+-++..+.+.| ..|.+ .-+.|-.|..+.+.+... ..+++|... |+.-..-..
T Consensus 166 gWgkketqfrgk~~raqlrdptmp~~vD~G~l~avd~~k~~i~wrgD~~y~~v~r~Ee~prra~rvysre-g~lds~sep 244 (1243)
T COG5290 166 GWGKKETQFRGKGARAQLRDPTMPYMVDYGDLFAVDTNKKIIFWRGDTEYNLVGRSEERPRRAFRVYSRE-GQLDSASEP 244 (1243)
T ss_pred eecccchhccccchhhhccCCCCcccccccceeEeeCCceEEEEccCcceeeecchhcccccceeeeccc-cccccccCC
Confidence 00000000000 11111 234555555555544322 224444432 211111111
Q ss_pred CCcCeeEEEEcCCCCEEEEEeCCC-----eEEEEECCC---CceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEe
Q 005277 462 HNYPVWDVQFNPQGHYFASSSHDR-----TARIWSMDR---IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWD 533 (704)
Q Consensus 462 h~~~V~~v~~sp~~~~l~sgs~dg-----~i~lwd~~~---~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd 533 (704)
.++.-..++|-|+|..+++-+.|| .|.++.-+. +..-.. .+-...+..++|+-....++++ ....|.+|-
T Consensus 245 ~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr-~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwt 322 (1243)
T COG5290 245 VTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLR-VGCDEKAFLENWNLLSTVLAVA-EGNLLKLWT 322 (1243)
T ss_pred cccchhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCcccc-CCchhhhhhhhhhHHHHHHHHh-hcceEEEEE
Confidence 223334589999999999987554 244443221 211000 1122345567777666555554 456799997
Q ss_pred CCCCcEEEEeecCCCCEEEEEEecCC
Q 005277 534 VSSGECVRIFIGHRSMILSLAMSPDG 559 (704)
Q Consensus 534 ~~~~~~~~~~~~h~~~i~~l~~spdg 559 (704)
..+-.-.....-.-..+.-+.|+|..
T Consensus 323 tkNyhWYLK~e~~ip~~s~vkwhpe~ 348 (1243)
T COG5290 323 TKNYHWYLKVERQIPGISYVKWHPEE 348 (1243)
T ss_pred ccceEEEEEEeecCCCcceeeecccc
Confidence 65543322222233456667888843
No 488
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=79.66 E-value=87 Score=33.08 Aligned_cols=12 Identities=8% Similarity=0.293 Sum_probs=8.5
Q ss_pred CCCCEEEEEeCC
Q 005277 473 PQGHYFASSSHD 484 (704)
Q Consensus 473 p~~~~l~sgs~d 484 (704)
-+++..+.|+.+
T Consensus 117 ~~g~IYviGG~~ 128 (346)
T TIGR03547 117 HNGQAYFTGGVN 128 (346)
T ss_pred eCCEEEEEcCcC
Confidence 367788888754
No 489
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=79.64 E-value=23 Score=35.37 Aligned_cols=140 Identities=14% Similarity=0.162 Sum_probs=75.7
Q ss_pred EEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeC---CCeEEEEECCCC--cee-EE----eccCCCCeeEEEEc
Q 005277 445 IRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH---DRTARIWSMDRI--QPL-RI----MAGHLSDVDCVRWH 514 (704)
Q Consensus 445 I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~---dg~i~lwd~~~~--~~~-~~----~~~~~~~V~~v~~~ 514 (704)
-.+||+.+++.....-....-+.+-.+.++|+++.+|+. ...+++++.... .+- .. +. ....-.++.--
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~-~~RWYpT~~~L 126 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ-SGRWYPTATTL 126 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc-CCCccccceEC
Confidence 346777766543222222223344567789999999874 234777765430 000 00 11 11112223334
Q ss_pred CCCCEEEEEECCC-cEEEEeCCC--CcEEEE-eec------CCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeee
Q 005277 515 INCNYIATGSSDK-TVRLWDVSS--GECVRI-FIG------HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP 584 (704)
Q Consensus 515 p~~~~l~tgs~dg-~I~iwd~~~--~~~~~~-~~~------h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~ 584 (704)
|||+.|+.|+... +..+|.-.. ...... +.. ...----+...|+|+.++.+..++ .|||..+.+.++.
T Consensus 127 ~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~ 204 (243)
T PF07250_consen 127 PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRT 204 (243)
T ss_pred CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEee
Confidence 7999999988764 345555421 111111 111 112223466788999999888764 5678888877776
Q ss_pred ecC
Q 005277 585 LMG 587 (704)
Q Consensus 585 ~~~ 587 (704)
+..
T Consensus 205 lP~ 207 (243)
T PF07250_consen 205 LPD 207 (243)
T ss_pred CCC
Confidence 654
No 490
>PLN02193 nitrile-specifier protein
Probab=79.60 E-value=1.1e+02 Score=34.12 Aligned_cols=105 Identities=6% Similarity=-0.019 Sum_probs=52.4
Q ss_pred CCCEEEEEeCCC-----eEEEEECCCCceeEEec-----cCCCCeeEEEEcCCCCEEEEEECC----CcEEEEeCCCCcE
Q 005277 474 QGHYFASSSHDR-----TARIWSMDRIQPLRIMA-----GHLSDVDCVRWHINCNYIATGSSD----KTVRLWDVSSGEC 539 (704)
Q Consensus 474 ~~~~l~sgs~dg-----~i~lwd~~~~~~~~~~~-----~~~~~V~~v~~~p~~~~l~tgs~d----g~I~iwd~~~~~~ 539 (704)
++++++.|+.++ .+..||+.+.+-...-. ...... +++. -++++++.|+.+ ..+.+||+.+.+-
T Consensus 278 ~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~-~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~W 355 (470)
T PLN02193 278 EENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGA-GLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDKW 355 (470)
T ss_pred CCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCc-EEEE-ECCcEEEEECCCCCccCceEEEECCCCEE
Confidence 566677776543 46677776643222110 001111 1222 256677777655 4589999987764
Q ss_pred EEEeec---CCCCEEEEEEecCCCEEEEEeCC--------------CeEEEEeCCCCe
Q 005277 540 VRIFIG---HRSMILSLAMSPDGRYMASGDED--------------GTIMMWDLASGR 580 (704)
Q Consensus 540 ~~~~~~---h~~~i~~l~~spdg~~l~sg~~d--------------g~I~iwdl~~~~ 580 (704)
...-.. ........+..-++++++.|+.+ ..+.+||+.+.+
T Consensus 356 ~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~ 413 (470)
T PLN02193 356 TQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQ 413 (470)
T ss_pred EEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCE
Confidence 332211 11111111222356777777753 246777776554
No 491
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=79.26 E-value=43 Score=32.58 Aligned_cols=100 Identities=15% Similarity=0.241 Sum_probs=61.0
Q ss_pred EEEEEeCCCeEEEEECC--CCceeEEeccCCCCeeEEEEcCCCCEEEEEECC------CcEEEE---eCC--CCcEEE-E
Q 005277 477 YFASSSHDRTARIWSMD--RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD------KTVRLW---DVS--SGECVR-I 542 (704)
Q Consensus 477 ~l~sgs~dg~i~lwd~~--~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d------g~I~iw---d~~--~~~~~~-~ 542 (704)
.++.+...+.|.+|++. ..++...|. .-+.|..+.++..|+||+|--.+ ..+|+| ... ...+++ .
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR 108 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR 108 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence 34343566889999988 334455555 45889999999999999995322 256664 222 122222 1
Q ss_pred eec---------------------CCCCEEEEEEec-CCCEEEEEeCCCeEEEEeCCCC
Q 005277 543 FIG---------------------HRSMILSLAMSP-DGRYMASGDEDGTIMMWDLASG 579 (704)
Q Consensus 543 ~~~---------------------h~~~i~~l~~sp-dg~~l~sg~~dg~I~iwdl~~~ 579 (704)
+.| -..++.+++..| .|+.+ .|+ ++.+.+|.+...
T Consensus 109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~Ll-Vg~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLL-VGC-GNKLVLFTLKYQ 165 (215)
T ss_pred EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEE-EEc-CCEEEEEEEEEE
Confidence 112 133567777777 45544 444 457999987543
No 492
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=78.68 E-value=99 Score=33.14 Aligned_cols=143 Identities=17% Similarity=0.208 Sum_probs=86.7
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEc----CCCCE--EEEEe-CC---CeEEEEECCCC-ceeE
Q 005277 431 PLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN----PQGHY--FASSS-HD---RTARIWSMDRI-QPLR 499 (704)
Q Consensus 431 p~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~s----p~~~~--l~sgs-~d---g~i~lwd~~~~-~~~~ 499 (704)
|...+++....++-+.+||+. |+.+..+.. +.+..+..- -.|+. ++.++ .+ .+|++|.++.. ..+.
T Consensus 66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~ 142 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT 142 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT-S-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred cccceEEEEeCCCCEEEEcCC-CcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence 345578888888999999998 666666642 233333321 13433 44444 22 57999987632 2333
Q ss_pred Eecc-------CCCCeeEEEEc--C-CCC-EEEEEECCCcEEEEeCC---CC----cEEEEeecCCCCEEEEEEecCCCE
Q 005277 500 IMAG-------HLSDVDCVRWH--I-NCN-YIATGSSDKTVRLWDVS---SG----ECVRIFIGHRSMILSLAMSPDGRY 561 (704)
Q Consensus 500 ~~~~-------~~~~V~~v~~~--p-~~~-~l~tgs~dg~I~iwd~~---~~----~~~~~~~~h~~~i~~l~~spdg~~ 561 (704)
.+.. ....+..+|+- | +|. ++++...+|.+..|-+. .+ +.++.|.. ...+..|.......+
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~ 221 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGR 221 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTE
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCC
Confidence 3321 12345666663 3 344 66677889988888764 33 46788864 347899999988889
Q ss_pred EEEEeCCCeEEEEeCC
Q 005277 562 MASGDEDGTIMMWDLA 577 (704)
Q Consensus 562 l~sg~~dg~I~iwdl~ 577 (704)
|+.|-++.-|+-|+..
T Consensus 222 LYvgEE~~GIW~y~Ae 237 (381)
T PF02333_consen 222 LYVGEEDVGIWRYDAE 237 (381)
T ss_dssp EEEEETTTEEEEEESS
T ss_pred EEEecCccEEEEEecC
Confidence 9999999888888875
No 493
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=78.55 E-value=9.7 Score=43.39 Aligned_cols=39 Identities=26% Similarity=0.379 Sum_probs=29.3
Q ss_pred cCeEEEEEcC----CCCEEEEEeCCCeEEEEeCCCCceeEEee
Q 005277 422 GPVYSASFSP----LGDFILSSSADTTIRLWSTKLNANLVCYK 460 (704)
Q Consensus 422 ~~V~~l~~sp----~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~ 460 (704)
+.+.++++++ +..+|++.+.|+++|+||+.+++++....
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence 4455666666 67899999999999999999999976654
No 494
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=78.01 E-value=86 Score=34.58 Aligned_cols=115 Identities=10% Similarity=0.141 Sum_probs=0.0
Q ss_pred eeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe-------ccCCCCeeEEEEcCCC------CEEE
Q 005277 455 NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM-------AGHLSDVDCVRWHINC------NYIA 521 (704)
Q Consensus 455 ~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~-------~~~~~~V~~v~~~p~~------~~l~ 521 (704)
.+..+-..-...|.|+|.|+|++|++--..|.|++++..+....... .........|++||+- .+|.
T Consensus 21 ~~~~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lY 100 (454)
T TIGR03606 21 DKKVLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVY 100 (454)
T ss_pred EEEEEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEE
Q ss_pred EEE----------CCCcEEEEeCC-----CCcEEEEeecCCCC----EEEEEEecCCCEEEEEeCCC
Q 005277 522 TGS----------SDKTVRLWDVS-----SGECVRIFIGHRSM----ILSLAMSPDGRYMASGDEDG 569 (704)
Q Consensus 522 tgs----------~dg~I~iwd~~-----~~~~~~~~~~h~~~----i~~l~~spdg~~l~sg~~dg 569 (704)
+.. ....|.-|.+. -......+.+.... -..|+|.|||.+.++.++.+
T Consensus 101 vsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g 167 (454)
T TIGR03606 101 ISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQG 167 (454)
T ss_pred EEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCC
No 495
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=77.40 E-value=67 Score=35.13 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=19.0
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCCC
Q 005277 632 SCEGSLLASGSADCTVKLWDVTTS 655 (704)
Q Consensus 632 s~~g~~lasgs~Dg~V~iWd~~~~ 655 (704)
.+..+.+++.+.+|.|.+|++..+
T Consensus 198 d~~r~~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 198 DPSRRLLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp ETTTTEEEEEESSE-EEEEEE-SS
T ss_pred cCCcCEEEEEeCCCcEEEEEEeCC
Confidence 556689999999999999999863
No 496
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=76.90 E-value=92 Score=31.84 Aligned_cols=200 Identities=17% Similarity=0.171 Sum_probs=118.3
Q ss_pred EEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCe
Q 005277 345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (704)
Q Consensus 345 ~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 424 (704)
..+.+..+-+..+.++.+ +...+..+.-++|.|+.+..... ....+ .-.+--
T Consensus 80 ~~~i~~~~l~~Dv~vse~--yvyvad~ssGL~IvDIS~P~sP~-------------------------~~~~l-nt~gya 131 (370)
T COG5276 80 LSVINARDLFADVRVSEE--YVYVADWSSGLRIVDISTPDSPT-------------------------LIGFL-NTDGYA 131 (370)
T ss_pred EEEEehhhhhheeEeccc--EEEEEcCCCceEEEeccCCCCcc-------------------------eeccc-cCCceE
Confidence 345667777888888765 55555567779999998632111 11111 111334
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCce---eEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCc-eeEE
Q 005277 425 YSASFSPLGDFILSSSADTTIRLWSTKLNAN---LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ-PLRI 500 (704)
Q Consensus 425 ~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~---~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~-~~~~ 500 (704)
+++..+ |++...+..|.-..+.|+.+.+. ...+......-+.++.| |++-..+..|+-+.+-|+.... |...
T Consensus 132 ygv~vs--Gn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli 207 (370)
T COG5276 132 YGVYVS--GNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLI 207 (370)
T ss_pred EEEEec--CCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEE
Confidence 555555 89988888666677888876533 33444444555677776 7788888899999999997653 2222
Q ss_pred ecc-CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEee--cCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 005277 501 MAG-HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI--GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA 577 (704)
Q Consensus 501 ~~~-~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~--~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~ 577 (704)
-.- ....+.++..+++-.+++.. +--+.+-|..+.+....+- ....++.--.+.-.|++...+..+.-+-+-|+.
T Consensus 208 ~~~n~g~g~~sv~vsdnr~y~vvy--~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idis 285 (370)
T COG5276 208 GSYNTGPGTYSVSVSDNRAYLVVY--DEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDIS 285 (370)
T ss_pred EEEecCCceEEEEecCCeeEEEEc--ccceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEecc
Confidence 111 22267777777776666654 3347777776655444332 122222111233346666666666666666665
Q ss_pred C
Q 005277 578 S 578 (704)
Q Consensus 578 ~ 578 (704)
+
T Consensus 286 n 286 (370)
T COG5276 286 N 286 (370)
T ss_pred C
Confidence 4
No 497
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=76.74 E-value=8.9 Score=43.68 Aligned_cols=72 Identities=22% Similarity=0.302 Sum_probs=44.4
Q ss_pred CCCCEEEEEECCCcEEEEeCCC----CcEEEEe--e--------------------cCCCCEEEEEEec----CCCEEEE
Q 005277 515 INCNYIATGSSDKTVRLWDVSS----GECVRIF--I--------------------GHRSMILSLAMSP----DGRYMAS 564 (704)
Q Consensus 515 p~~~~l~tgs~dg~I~iwd~~~----~~~~~~~--~--------------------~h~~~i~~l~~sp----dg~~l~s 564 (704)
++...++++..||.+....... +...... . ...+.+..+++++ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4666777777888877776553 2111110 0 0123456666666 6789999
Q ss_pred EeCCCeEEEEeCCCCeeeeeec
Q 005277 565 GDEDGTIMMWDLASGRCVTPLM 586 (704)
Q Consensus 565 g~~dg~I~iwdl~~~~~~~~~~ 586 (704)
.+.|+.+++||+.+++++.+..
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEec
Confidence 9999999999999999976653
No 498
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=76.57 E-value=1.5e+02 Score=34.14 Aligned_cols=120 Identities=10% Similarity=0.104 Sum_probs=65.8
Q ss_pred CcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeE--Eec-cCCCCeeEEEEcC------CCCEEEEEEC-C---CcE
Q 005277 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR--IMA-GHLSDVDCVRWHI------NCNYIATGSS-D---KTV 529 (704)
Q Consensus 463 ~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~--~~~-~~~~~V~~v~~~p------~~~~l~tgs~-d---g~I 529 (704)
...|-+|.|.+++..+++...+|.|.+||........ ... .+...+.--+|-+ ...++++-+. + -+.
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 5678899999999999999999999999993322111 111 1222111112211 2345555443 2 346
Q ss_pred EEEeC--CCCcEEEEee---cCCCCEE--EEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeec
Q 005277 530 RLWDV--SSGECVRIFI---GHRSMIL--SLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM 586 (704)
Q Consensus 530 ~iwd~--~~~~~~~~~~---~h~~~i~--~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~ 586 (704)
+++.+ ....+. .+. .+..... .+++. +|....- .++.|.+|++...+...++.
T Consensus 209 kL~~l~~~~~~~~-El~s~~~e~~~~~~s~f~Y~-~G~LY~l--~~~~i~~ysip~f~~~~tI~ 268 (670)
T PF10395_consen 209 KLISLSNESSSIF-ELSSTILENFGLEDSKFCYQ-FGKLYQL--SKKTISSYSIPNFQIQKTIS 268 (670)
T ss_pred EEEEeccCCcceE-EeehheeccCCcccceEEEe-CCEEEEE--eCCEEEEEEcCCceEEEEEE
Confidence 77777 222222 221 1122222 23333 4543333 67789999998877666553
No 499
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=76.54 E-value=3.4 Score=37.71 Aligned_cols=65 Identities=22% Similarity=0.305 Sum_probs=47.1
Q ss_pred hhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhHHhhhHHHHHHHhcCCChhhhcc---CHHHHHhh
Q 005277 90 LHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEE---MEFAHSLR 154 (704)
Q Consensus 90 ~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~ 154 (704)
..++|=+.+.-|++||.+|...+|.+|..++-..+...+.++++.+.++..-....+ .++...+-
T Consensus 36 ~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~~lL~~~~~~~~~~s~~~~l~~ 103 (145)
T PF10607_consen 36 SSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLMSLLAYPDPEEPLPSPYKELLS 103 (145)
T ss_pred CchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHcCCcccccchHHHHHhC
Confidence 678999999999999999999999999998654344457788888666553333333 34444333
No 500
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=76.04 E-value=1.2e+02 Score=32.55 Aligned_cols=154 Identities=11% Similarity=0.006 Sum_probs=87.6
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEeecCC-cCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCC---C
Q 005277 432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHN-YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS---D 507 (704)
Q Consensus 432 ~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~-~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~---~ 507 (704)
+|+ ++.++.+|.+...|..+++.+..+.... ..+..-....++ .+..++.++.+...+.+++........... .
T Consensus 111 ~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~ 188 (370)
T COG1520 111 DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLS 188 (370)
T ss_pred CCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccc
Confidence 555 7788888989999998899888887655 111111111133 344444678888888888877665442211 1
Q ss_pred eeEEEEcCCCCEEEEEEC--CCcEEEEeCCCCcEEEEeecCC----CCEEEEEEecC-----CCEEEEEeCCCeEEEEeC
Q 005277 508 VDCVRWHINCNYIATGSS--DKTVRLWDVSSGECVRIFIGHR----SMILSLAMSPD-----GRYMASGDEDGTIMMWDL 576 (704)
Q Consensus 508 V~~v~~~p~~~~l~tgs~--dg~I~iwd~~~~~~~~~~~~h~----~~i~~l~~spd-----g~~l~sg~~dg~I~iwdl 576 (704)
+..--. .....+..+.. ++.+.-.|..+|........+. ..+........ +..+..++.+|.+...|.
T Consensus 189 ~~~~~~-~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~ 267 (370)
T COG1520 189 IYGSPA-IASGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDA 267 (370)
T ss_pred cccCce-eecceEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEc
Confidence 100000 12334455544 5667777888887766532111 11100111111 223456777888999999
Q ss_pred CCCeeeeeecCC
Q 005277 577 ASGRCVTPLMGH 588 (704)
Q Consensus 577 ~~~~~~~~~~~h 588 (704)
.+++.+-.+...
T Consensus 268 ~~G~~~W~~~~~ 279 (370)
T COG1520 268 DTGELIWSFPAG 279 (370)
T ss_pred CCCceEEEEecc
Confidence 999888777653
Done!