Query 005277
Match_columns 704
No_of_seqs 888 out of 3961
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 20:41:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005277.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005277hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 3E-44 1E-48 391.9 40.1 281 346-703 103-403 (410)
2 3ow8_A WD repeat-containing pr 100.0 2.4E-43 8.1E-48 371.8 41.3 284 345-703 26-313 (321)
3 2ynn_A Coatomer subunit beta'; 100.0 9.1E-43 3.1E-47 364.2 41.0 283 344-703 6-295 (304)
4 1got_B GT-beta; complex (GTP-b 100.0 3.2E-42 1.1E-46 366.1 43.2 284 342-703 46-335 (340)
5 2pbi_B Guanine nucleotide-bind 100.0 2.2E-41 7.4E-46 361.9 43.4 284 343-703 56-349 (354)
6 4ery_A WD repeat-containing pr 100.0 3.8E-40 1.3E-44 344.9 45.0 288 342-703 14-304 (312)
7 3fm0_A Protein CIAO1; WDR39,SG 100.0 8E-41 2.7E-45 356.1 40.3 296 343-703 7-327 (345)
8 2j49_A Transcription initiatio 100.0 9.3E-44 3.2E-48 320.8 14.5 139 61-200 4-145 (148)
9 3frx_A Guanine nucleotide-bind 100.0 3.4E-40 1.2E-44 347.2 42.3 292 345-703 11-309 (319)
10 3iz6_a 40S ribosomal protein R 100.0 2.8E-41 9.4E-46 364.6 33.3 291 340-703 55-367 (380)
11 2nxp_A Transcription initiatio 100.0 2.8E-43 9.5E-48 323.4 14.1 152 44-196 5-156 (156)
12 4gqb_B Methylosome protein 50; 100.0 3E-40 1E-44 351.4 38.5 286 349-703 28-323 (344)
13 2xzm_R RACK1; ribosome, transl 100.0 3.7E-39 1.3E-43 342.8 43.2 298 343-703 13-332 (343)
14 1nr0_A Actin interacting prote 100.0 1.5E-39 5.1E-44 373.5 43.1 359 329-703 38-514 (611)
15 2hes_X YDR267CP; beta-propelle 100.0 1.1E-39 3.9E-44 344.9 38.8 285 343-703 6-320 (330)
16 4g56_B MGC81050 protein; prote 100.0 2.3E-40 8E-45 354.3 33.3 281 348-703 39-335 (357)
17 1erj_A Transcriptional repress 100.0 3E-39 1E-43 350.3 41.0 298 345-703 58-381 (393)
18 2j4b_A TAF5, transcription ini 100.0 4E-42 1.4E-46 307.6 14.1 134 63-197 4-137 (138)
19 3ow8_A WD repeat-containing pr 100.0 3.1E-39 1.1E-43 340.3 38.6 263 329-653 57-320 (321)
20 1vyh_C Platelet-activating fac 100.0 3.5E-39 1.2E-43 351.8 37.6 262 329-653 129-410 (410)
21 1nr0_A Actin interacting prote 100.0 1.7E-38 5.9E-43 364.6 42.5 304 329-703 169-603 (611)
22 2ymu_A WD-40 repeat protein; u 100.0 5.4E-38 1.8E-42 357.1 42.6 289 330-703 284-572 (577)
23 4gqb_B Methylosome protein 50; 100.0 3.8E-38 1.3E-42 335.2 37.1 250 347-656 78-333 (344)
24 1got_B GT-beta; complex (GTP-b 100.0 1.1E-37 3.9E-42 330.9 39.7 263 329-651 76-340 (340)
25 3zwl_B Eukaryotic translation 100.0 3.6E-37 1.2E-41 328.1 42.2 285 340-703 21-338 (369)
26 4aow_A Guanine nucleotide-bind 100.0 7.4E-37 2.5E-41 322.6 43.7 294 345-703 32-329 (340)
27 1gxr_A ESG1, transducin-like e 100.0 1.5E-36 5.2E-41 319.2 42.8 284 344-703 44-329 (337)
28 3dm0_A Maltose-binding peripla 100.0 1.1E-36 3.8E-41 355.0 41.7 300 345-703 376-685 (694)
29 2pm9_A Protein WEB1, protein t 100.0 8.1E-38 2.8E-42 339.9 29.9 314 331-703 46-406 (416)
30 1sq9_A Antiviral protein SKI8; 100.0 2.8E-37 9.5E-42 333.7 33.9 301 344-703 9-387 (397)
31 2pm7_B Protein transport prote 100.0 8.6E-37 2.9E-41 317.8 36.2 249 346-654 4-285 (297)
32 2ynn_A Coatomer subunit beta'; 100.0 6.5E-37 2.2E-41 319.8 34.7 244 413-703 5-251 (304)
33 2pbi_B Guanine nucleotide-bind 100.0 2.6E-36 9E-41 322.4 39.6 266 329-651 85-354 (354)
34 2ymu_A WD-40 repeat protein; u 100.0 3.6E-36 1.2E-40 342.1 42.9 289 330-703 243-531 (577)
35 1r5m_A SIR4-interacting protei 100.0 1.4E-36 4.7E-41 330.1 36.7 289 350-703 107-417 (425)
36 3i2n_A WD repeat-containing pr 100.0 6E-37 2.1E-41 325.3 32.9 303 339-703 6-345 (357)
37 1k8k_C P40, ARP2/3 complex 41 100.0 1.7E-36 5.7E-41 324.1 36.1 295 348-703 5-353 (372)
38 3ei3_B DNA damage-binding prot 100.0 2.2E-36 7.6E-41 325.7 36.3 289 344-703 66-374 (383)
39 3dw8_B Serine/threonine-protei 100.0 1.3E-36 4.5E-41 333.8 34.1 301 349-702 26-438 (447)
40 3k26_A Polycomb protein EED; W 100.0 1.2E-36 4.2E-41 323.9 32.6 287 347-703 14-358 (366)
41 4g56_B MGC81050 protein; prote 100.0 1.6E-36 5.5E-41 324.5 33.3 252 346-657 89-346 (357)
42 3iz6_a 40S ribosomal protein R 100.0 1.6E-36 5.6E-41 327.2 32.8 272 329-656 87-377 (380)
43 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.5E-36 1.5E-40 319.4 35.7 270 329-658 37-339 (345)
44 3odt_A Protein DOA1; ubiquitin 100.0 1.9E-35 6.5E-40 307.7 39.6 276 341-703 8-288 (313)
45 3dwl_C Actin-related protein 2 100.0 1.4E-37 4.8E-42 334.0 24.1 245 347-653 7-280 (377)
46 2hes_X YDR267CP; beta-propelle 100.0 5.8E-36 2E-40 316.5 35.8 270 329-654 33-328 (330)
47 3frx_A Guanine nucleotide-bind 100.0 1.4E-35 4.9E-40 311.9 37.7 261 330-655 40-318 (319)
48 1r5m_A SIR4-interacting protei 100.0 7.1E-36 2.4E-40 324.5 35.9 289 345-703 39-353 (425)
49 1erj_A Transcriptional repress 100.0 9.8E-36 3.3E-40 322.7 36.7 246 352-654 124-389 (393)
50 3gre_A Serine/threonine-protei 100.0 3.5E-36 1.2E-40 330.2 31.7 329 343-703 54-432 (437)
51 3mkq_A Coatomer beta'-subunit; 100.0 1.7E-35 5.8E-40 350.6 39.1 281 345-702 7-294 (814)
52 3vl1_A 26S proteasome regulato 100.0 1.2E-35 4.2E-40 323.6 34.6 280 352-700 98-409 (420)
53 2j04_B YDR362CP, TAU91; beta p 100.0 9E-37 3.1E-41 341.6 26.2 295 350-703 132-509 (524)
54 3bg1_A Protein SEC13 homolog; 100.0 2.2E-36 7.5E-41 317.7 27.4 249 346-654 8-293 (316)
55 4e54_B DNA damage-binding prot 100.0 3.8E-36 1.3E-40 330.4 30.4 291 346-700 114-420 (435)
56 4gga_A P55CDC, cell division c 100.0 2E-35 6.8E-40 323.1 35.1 298 295-657 90-398 (420)
57 3v7d_B Cell division control p 100.0 1.3E-34 4.6E-39 320.2 41.7 319 335-702 105-454 (464)
58 2pm9_A Protein WEB1, protein t 100.0 2.8E-36 9.6E-41 327.7 27.3 277 352-703 13-329 (416)
59 2xzm_R RACK1; ribosome, transl 100.0 4.2E-35 1.4E-39 311.5 35.4 260 330-655 49-341 (343)
60 3vl1_A 26S proteasome regulato 100.0 4E-36 1.4E-40 327.4 28.2 272 354-703 59-357 (420)
61 3jrp_A Fusion protein of prote 100.0 3.6E-35 1.2E-39 314.0 35.2 250 346-655 6-288 (379)
62 1yfq_A Cell cycle arrest prote 100.0 1.1E-35 3.8E-40 314.1 30.5 275 348-703 8-315 (342)
63 4ery_A WD repeat-containing pr 100.0 1.2E-34 4.2E-39 303.1 38.0 261 330-653 45-311 (312)
64 3sfz_A APAF-1, apoptotic pepti 100.0 6.3E-35 2.2E-39 362.0 41.7 320 341-703 605-1026(1249)
65 1gxr_A ESG1, transducin-like e 100.0 4.6E-35 1.6E-39 307.9 33.4 275 349-703 7-288 (337)
66 3f3f_A Nucleoporin SEH1; struc 100.0 5.1E-35 1.7E-39 307.9 33.6 253 347-657 7-340 (351)
67 2pm7_B Protein transport prote 100.0 6.4E-35 2.2E-39 303.6 33.5 245 415-703 3-277 (297)
68 4aez_A CDC20, WD repeat-contai 100.0 1.4E-34 4.7E-39 314.3 35.1 279 346-703 86-372 (401)
69 2ovr_B FBW7, F-BOX/WD repeat p 100.0 5E-34 1.7E-38 314.2 39.0 310 346-703 113-430 (445)
70 2oaj_A Protein SNI1; WD40 repe 100.0 2.8E-34 9.6E-39 342.6 39.4 221 345-597 11-279 (902)
71 4aez_A CDC20, WD repeat-contai 100.0 2.1E-34 7.2E-39 312.8 34.8 294 300-658 83-384 (401)
72 4a11_B DNA excision repair pro 100.0 1.4E-33 5E-38 304.8 38.8 296 346-703 38-357 (408)
73 3mmy_A MRNA export factor; mRN 100.0 8.5E-34 2.9E-38 301.8 35.9 285 340-703 28-338 (368)
74 1sq9_A Antiviral protein SKI8; 100.0 3.7E-34 1.3E-38 309.2 32.1 269 329-655 35-396 (397)
75 1pgu_A Actin interacting prote 100.0 6E-33 2E-37 317.2 42.0 291 331-703 143-606 (615)
76 1p22_A F-BOX/WD-repeat protein 100.0 1.4E-33 4.9E-38 309.8 35.3 274 348-703 130-406 (435)
77 4h5i_A Guanine nucleotide-exch 100.0 4.1E-34 1.4E-38 306.8 29.6 284 349-703 12-335 (365)
78 3bg1_A Protein SEC13 homolog; 100.0 1.2E-34 4.1E-39 304.4 24.4 244 415-703 7-285 (316)
79 4gga_A P55CDC, cell division c 100.0 3.2E-33 1.1E-37 305.6 36.6 271 353-703 107-387 (420)
80 3k26_A Polycomb protein EED; W 100.0 3.2E-34 1.1E-38 305.1 27.8 261 330-654 44-366 (366)
81 3dm0_A Maltose-binding peripla 100.0 3.9E-33 1.3E-37 325.0 38.6 262 329-654 404-693 (694)
82 3i2n_A WD repeat-containing pr 100.0 9.9E-34 3.4E-38 300.5 30.1 266 329-656 43-355 (357)
83 3jro_A Fusion protein of prote 100.0 4.3E-34 1.5E-38 335.8 30.0 251 346-656 4-287 (753)
84 4ggc_A P55CDC, cell division c 100.0 6E-33 2.1E-37 289.7 34.5 295 296-655 11-316 (318)
85 3sfz_A APAF-1, apoptotic pepti 100.0 6.3E-33 2.2E-37 344.0 40.3 346 329-703 636-1108(1249)
86 1k8k_C P40, ARP2/3 complex 41 100.0 6.6E-33 2.3E-37 296.1 34.1 269 329-657 29-364 (372)
87 2aq5_A Coronin-1A; WD40 repeat 100.0 1.2E-33 4E-38 306.9 28.7 276 354-699 37-332 (402)
88 3mkq_A Coatomer beta'-subunit; 100.0 1.4E-32 4.8E-37 325.5 38.9 307 330-699 35-375 (814)
89 2j04_B YDR362CP, TAU91; beta p 100.0 1.5E-33 5E-38 315.6 28.6 309 328-655 181-518 (524)
90 1pgu_A Actin interacting prote 100.0 1.4E-32 4.9E-37 314.1 37.0 271 329-657 38-331 (615)
91 4ggc_A P55CDC, cell division c 100.0 3.4E-32 1.2E-36 284.0 36.6 270 354-703 28-307 (318)
92 2oaj_A Protein SNI1; WD40 repe 100.0 1E-32 3.4E-37 329.2 36.5 309 329-703 78-653 (902)
93 3jrp_A Fusion protein of prote 100.0 8.7E-33 3E-37 295.5 30.9 247 413-703 3-279 (379)
94 3zwl_B Eukaryotic translation 100.0 8.5E-32 2.9E-36 286.5 38.2 263 330-657 54-349 (369)
95 3ei3_B DNA damage-binding prot 100.0 1.1E-32 3.7E-37 296.9 31.1 261 329-654 95-382 (383)
96 2xyi_A Probable histone-bindin 100.0 2.2E-32 7.6E-37 299.9 33.6 264 340-655 117-411 (430)
97 4aow_A Guanine nucleotide-bind 100.0 1.5E-31 5E-36 282.0 38.6 263 330-656 61-339 (340)
98 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.6E-32 8.7E-37 301.2 34.1 301 352-701 5-375 (450)
99 3odt_A Protein DOA1; ubiquitin 100.0 1.3E-31 4.3E-36 278.8 37.4 259 330-657 39-299 (313)
100 3dwl_C Actin-related protein 2 100.0 6.1E-34 2.1E-38 305.6 20.3 239 418-702 8-273 (377)
101 3f3f_A Nucleoporin SEH1; struc 100.0 2.9E-32 9.9E-37 286.8 30.0 255 415-703 5-329 (351)
102 4h5i_A Guanine nucleotide-exch 100.0 3.9E-32 1.3E-36 291.3 28.0 254 345-655 67-344 (365)
103 3vu4_A KMHSV2; beta-propeller 100.0 2E-31 6.7E-36 284.7 32.0 284 346-703 14-328 (355)
104 2xyi_A Probable histone-bindin 100.0 2.4E-31 8E-36 291.8 33.1 255 414-703 121-402 (430)
105 2j04_A TAU60, YPL007P, hypothe 100.0 1.6E-32 5.4E-37 300.7 23.0 254 350-703 14-290 (588)
106 4e54_B DNA damage-binding prot 100.0 3.3E-32 1.1E-36 299.0 25.8 266 329-656 141-432 (435)
107 3gre_A Serine/threonine-protei 100.0 5E-32 1.7E-36 297.1 25.9 259 413-703 54-351 (437)
108 1p22_A F-BOX/WD-repeat protein 100.0 5.2E-31 1.8E-35 289.3 33.2 254 329-657 152-417 (435)
109 3lrv_A PRE-mRNA-splicing facto 100.0 9.3E-32 3.2E-36 285.6 26.1 232 358-657 43-295 (343)
110 2aq5_A Coronin-1A; WD40 repeat 100.0 2.5E-31 8.7E-36 288.5 25.7 254 346-656 76-344 (402)
111 4gq1_A NUP37; propeller, trans 100.0 5.7E-31 1.9E-35 285.2 28.1 258 417-703 85-382 (393)
112 3jro_A Fusion protein of prote 100.0 6.1E-31 2.1E-35 308.9 28.2 245 415-703 3-277 (753)
113 1yfq_A Cell cycle arrest prote 100.0 6.3E-30 2.2E-34 269.9 31.3 255 329-652 32-322 (342)
114 2j04_A TAU60, YPL007P, hypothe 100.0 3.3E-31 1.1E-35 290.3 21.9 246 349-700 83-350 (588)
115 2ovr_B FBW7, F-BOX/WD repeat p 100.0 6.1E-29 2.1E-33 273.5 40.1 288 329-655 138-443 (445)
116 3dw8_B Serine/threonine-protei 100.0 2.7E-30 9.4E-35 283.4 27.5 234 419-703 26-365 (447)
117 3v7d_B Cell division control p 100.0 3.9E-29 1.3E-33 276.3 34.3 235 413-703 113-373 (464)
118 3bws_A Protein LP49; two-domai 100.0 1.2E-28 4.1E-33 269.5 35.7 283 344-702 115-423 (433)
119 4a11_B DNA excision repair pro 100.0 5.7E-29 1.9E-33 268.7 32.4 247 349-658 97-369 (408)
120 4gq1_A NUP37; propeller, trans 100.0 3.1E-30 1E-34 279.5 22.2 246 349-652 87-387 (393)
121 2vdu_B TRNA (guanine-N(7)-)-me 100.0 7.1E-29 2.4E-33 273.6 31.7 220 348-597 99-362 (450)
122 3mmy_A MRNA export factor; mRN 100.0 1.8E-28 6.1E-33 260.6 30.0 260 329-654 63-346 (368)
123 2w18_A PALB2, fancn, partner a 100.0 1.6E-27 5.5E-32 246.0 30.9 260 354-652 42-355 (356)
124 1l0q_A Surface layer protein; 100.0 2.9E-26 9.8E-31 247.0 40.1 263 330-661 12-282 (391)
125 3lrv_A PRE-mRNA-splicing facto 100.0 3.2E-28 1.1E-32 258.3 24.4 223 428-702 43-283 (343)
126 1l0q_A Surface layer protein; 100.0 1.9E-26 6.5E-31 248.4 36.1 256 364-702 3-266 (391)
127 3bws_A Protein LP49; two-domai 99.9 1.2E-25 4.2E-30 245.5 33.8 259 330-654 144-432 (433)
128 3vu4_A KMHSV2; beta-propeller 99.9 3.3E-26 1.1E-30 244.2 26.0 229 414-703 12-263 (355)
129 2w18_A PALB2, fancn, partner a 99.9 1.4E-25 4.7E-30 231.6 28.4 229 423-703 41-349 (356)
130 2hqs_A Protein TOLB; TOLB, PAL 99.9 2.4E-25 8.4E-30 242.7 29.4 278 331-692 94-409 (415)
131 2hqs_A Protein TOLB; TOLB, PAL 99.9 2.2E-24 7.5E-29 235.1 28.8 269 353-702 64-375 (415)
132 2ojh_A Uncharacterized protein 99.9 2.3E-24 8E-29 221.0 24.5 256 368-702 17-293 (297)
133 2ecf_A Dipeptidyl peptidase IV 99.9 5.8E-24 2E-28 249.2 29.6 293 351-700 36-399 (741)
134 1nir_A Nitrite reductase; hemo 99.9 1.2E-22 4.2E-27 228.6 37.9 299 329-700 158-498 (543)
135 3vgz_A Uncharacterized protein 99.9 2.1E-22 7E-27 213.1 35.4 273 349-702 38-335 (353)
136 1ri6_A Putative isomerase YBHE 99.9 5.4E-22 1.9E-26 208.6 33.0 290 329-693 14-335 (343)
137 2ecf_A Dipeptidyl peptidase IV 99.9 8.8E-23 3E-27 239.1 29.0 270 353-701 110-445 (741)
138 1nir_A Nitrite reductase; hemo 99.9 1.9E-22 6.6E-27 227.0 30.2 267 358-699 144-439 (543)
139 1xfd_A DIP, dipeptidyl aminope 99.9 6.4E-23 2.2E-27 239.5 23.8 271 353-701 18-380 (723)
140 2ojh_A Uncharacterized protein 99.9 4.9E-22 1.7E-26 203.6 27.0 250 329-645 21-293 (297)
141 3u4y_A Uncharacterized protein 99.9 9.9E-22 3.4E-26 206.3 29.8 274 358-702 4-294 (331)
142 1ri6_A Putative isomerase YBHE 99.9 6.9E-22 2.4E-26 207.8 28.3 263 364-700 6-296 (343)
143 1xfd_A DIP, dipeptidyl aminope 99.9 5E-22 1.7E-26 232.0 29.7 299 330-700 37-429 (723)
144 3o4h_A Acylamino-acid-releasin 99.9 3.1E-22 1.1E-26 227.9 26.5 258 353-702 23-303 (582)
145 2z3z_A Dipeptidyl aminopeptida 99.9 7E-22 2.4E-26 230.2 30.0 267 352-701 82-421 (706)
146 1k32_A Tricorn protease; prote 99.9 1.3E-21 4.3E-26 238.1 30.7 273 345-702 197-493 (1045)
147 3u4y_A Uncharacterized protein 99.9 2E-20 6.8E-25 196.4 32.5 263 329-656 19-306 (331)
148 2oit_A Nucleoporin 214KDA; NH2 99.9 3.3E-21 1.1E-25 211.0 26.2 213 352-579 37-279 (434)
149 1k32_A Tricorn protease; prote 99.9 1E-20 3.4E-25 230.2 29.3 298 350-702 294-629 (1045)
150 3hfq_A Uncharacterized protein 99.9 5.2E-20 1.8E-24 194.9 30.3 253 341-653 29-316 (347)
151 2oit_A Nucleoporin 214KDA; NH2 99.9 4.3E-21 1.5E-25 210.1 21.6 242 422-702 37-323 (434)
152 2z3z_A Dipeptidyl aminopeptida 99.9 1.3E-20 4.6E-25 219.4 26.9 280 354-701 28-376 (706)
153 1pby_B Quinohemoprotein amine 99.9 2.8E-20 9.7E-25 194.9 26.0 255 364-702 2-301 (337)
154 1pby_B Quinohemoprotein amine 99.9 5.8E-20 2E-24 192.5 27.3 260 330-659 11-315 (337)
155 3scy_A Hypothetical bacterial 99.9 1E-18 3.4E-23 186.1 35.8 244 350-654 48-337 (361)
156 1jmx_B Amine dehydrogenase; ox 99.9 1.3E-19 4.6E-24 190.9 27.8 234 356-658 4-329 (349)
157 3hfq_A Uncharacterized protein 99.8 3E-19 1E-23 189.0 29.3 236 419-701 37-306 (347)
158 3vgz_A Uncharacterized protein 99.8 9.1E-19 3.1E-23 185.0 32.8 243 331-597 70-321 (353)
159 3pe7_A Oligogalacturonate lyas 99.8 2.3E-19 7.8E-24 192.7 27.0 289 344-701 23-371 (388)
160 1z68_A Fibroblast activation p 99.8 3.6E-20 1.2E-24 216.3 21.6 264 356-701 20-376 (719)
161 3scy_A Hypothetical bacterial 99.8 2.1E-18 7.2E-23 183.6 32.0 234 420-701 48-326 (361)
162 1z68_A Fibroblast activation p 99.8 1.4E-19 4.8E-24 211.3 20.7 293 330-699 36-428 (719)
163 1jof_A Carboxy-CIS,CIS-muconat 99.8 4.3E-18 1.5E-22 181.9 25.2 242 352-655 40-342 (365)
164 3o4h_A Acylamino-acid-releasin 99.8 8.3E-19 2.8E-23 199.6 20.5 226 421-703 21-268 (582)
165 4a5s_A Dipeptidyl peptidase 4 99.8 8.5E-18 2.9E-22 196.9 26.5 237 354-656 19-355 (740)
166 3c5m_A Oligogalacturonate lyas 99.8 2.8E-18 9.7E-23 184.2 20.4 276 354-701 38-371 (396)
167 3azo_A Aminopeptidase; POP fam 99.8 1.8E-17 6E-22 191.5 28.1 282 347-700 19-356 (662)
168 1jof_A Carboxy-CIS,CIS-muconat 99.8 3.1E-17 1.1E-21 175.2 27.3 234 421-701 39-330 (365)
169 1jmx_B Amine dehydrogenase; ox 99.8 9.7E-18 3.3E-22 176.6 22.9 255 426-702 4-316 (349)
170 3fvz_A Peptidyl-glycine alpha- 99.8 2.3E-16 8E-21 165.9 29.9 239 352-654 24-322 (329)
171 1q7f_A NHL, brain tumor CG1071 99.8 6.7E-16 2.3E-20 158.5 31.8 242 352-655 30-281 (286)
172 2gop_A Trilobed protease; beta 99.8 3.6E-16 1.2E-20 165.0 29.1 249 353-702 16-321 (347)
173 2dg1_A DRP35, lactonase; beta 99.7 5.7E-16 2E-20 162.6 27.2 273 352-701 6-300 (333)
174 3fvz_A Peptidyl-glycine alpha- 99.7 1.4E-15 4.9E-20 159.8 29.8 235 421-702 23-313 (329)
175 4a5s_A Dipeptidyl peptidase 4 99.7 1E-16 3.4E-21 187.8 21.7 142 422-567 17-190 (740)
176 2oiz_A Aromatic amine dehydrog 99.7 2.1E-15 7.2E-20 160.8 28.5 221 417-693 47-360 (361)
177 3azo_A Aminopeptidase; POP fam 99.7 9.5E-16 3.2E-20 176.9 24.6 174 420-595 128-341 (662)
178 2xdw_A Prolyl endopeptidase; a 99.7 3.3E-15 1.1E-19 174.1 29.1 240 353-656 126-416 (710)
179 2z2n_A Virginiamycin B lyase; 99.7 1.5E-13 5.1E-18 141.0 37.9 271 347-700 10-285 (299)
180 3e5z_A Putative gluconolactona 99.7 7E-15 2.4E-19 151.8 27.6 238 347-654 23-286 (296)
181 3pe7_A Oligogalacturonate lyas 99.7 2.5E-15 8.7E-20 161.0 25.0 209 413-657 22-276 (388)
182 2gop_A Trilobed protease; beta 99.7 4.8E-15 1.6E-19 156.3 26.3 223 352-653 59-330 (347)
183 1rwi_B Serine/threonine-protei 99.7 1.2E-14 4E-19 147.5 27.8 240 353-656 25-266 (270)
184 1q7f_A NHL, brain tumor CG1071 99.7 2.5E-14 8.4E-19 146.7 30.2 231 419-702 27-271 (286)
185 3e5z_A Putative gluconolactona 99.7 2E-14 7E-19 148.3 27.0 231 415-702 21-278 (296)
186 2xdw_A Prolyl endopeptidase; a 99.7 2.4E-14 8.3E-19 166.7 29.7 229 419-698 122-397 (710)
187 2dg1_A DRP35, lactonase; beta 99.7 2.3E-13 7.8E-18 142.7 34.3 224 343-597 36-287 (333)
188 2bkl_A Prolyl endopeptidase; m 99.6 1.1E-14 3.6E-19 169.3 24.8 241 351-657 120-400 (695)
189 3c5m_A Oligogalacturonate lyas 99.6 4.1E-15 1.4E-19 159.4 17.0 224 423-699 37-301 (396)
190 3no2_A Uncharacterized protein 99.6 1.9E-13 6.6E-18 139.7 26.9 192 362-587 4-204 (276)
191 2oiz_A Aromatic amine dehydrog 99.6 1.3E-13 4.4E-18 146.9 26.5 235 330-597 31-355 (361)
192 2bkl_A Prolyl endopeptidase; m 99.6 2.8E-14 9.6E-19 165.7 22.6 226 419-698 118-380 (695)
193 2qc5_A Streptogramin B lactona 99.6 9.5E-12 3.2E-16 127.6 37.3 270 349-699 17-290 (300)
194 1rwi_B Serine/threonine-protei 99.6 3.3E-13 1.1E-17 136.7 25.8 230 423-702 25-255 (270)
195 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 2.1E-12 7.3E-17 133.7 30.0 246 348-655 14-300 (314)
196 3no2_A Uncharacterized protein 99.6 5E-13 1.7E-17 136.6 24.4 191 432-662 4-203 (276)
197 1yr2_A Prolyl oligopeptidase; 99.5 3.7E-13 1.3E-17 157.5 25.2 238 353-656 164-443 (741)
198 1qks_A Cytochrome CD1 nitrite 99.5 2.1E-11 7.3E-16 136.9 38.0 298 330-700 177-522 (567)
199 3dsm_A Uncharacterized protein 99.5 5.4E-12 1.8E-16 132.4 29.4 223 422-698 44-285 (328)
200 1yr2_A Prolyl oligopeptidase; 99.5 9.7E-13 3.3E-17 153.9 25.9 226 420-698 161-424 (741)
201 3dsm_A Uncharacterized protein 99.5 4.2E-12 1.4E-16 133.2 27.9 235 354-658 46-305 (328)
202 1qks_A Cytochrome CD1 nitrite 99.5 2.3E-11 7.7E-16 136.7 34.4 266 361-699 165-458 (567)
203 2z2n_A Virginiamycin B lyase; 99.5 6.2E-11 2.1E-15 121.3 33.2 225 420-698 13-242 (299)
204 1xip_A Nucleoporin NUP159; bet 99.5 8.8E-13 3E-17 140.0 19.0 182 353-565 39-231 (388)
205 3hrp_A Uncharacterized protein 99.5 1.8E-11 6.2E-16 132.4 29.7 248 353-652 132-408 (409)
206 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 3.7E-11 1.3E-15 124.3 28.6 227 421-700 17-287 (314)
207 2qc5_A Streptogramin B lactona 99.4 4E-10 1.4E-14 115.3 34.8 216 350-597 60-279 (300)
208 3g4e_A Regucalcin; six bladed 99.4 5E-11 1.7E-15 123.0 27.7 213 353-597 14-248 (297)
209 1xip_A Nucleoporin NUP159; bet 99.4 3E-12 1E-16 135.9 17.9 161 423-597 39-221 (388)
210 3iuj_A Prolyl endopeptidase; h 99.4 3.2E-11 1.1E-15 139.8 26.4 236 351-656 128-407 (693)
211 3g4e_A Regucalcin; six bladed 99.4 2.4E-10 8.1E-15 117.9 29.8 226 420-699 11-260 (297)
212 3hrp_A Uncharacterized protein 99.4 1.1E-10 3.8E-15 126.2 28.1 256 422-701 131-400 (409)
213 3dr2_A Exported gluconolactona 99.4 1.2E-10 4E-15 120.7 25.7 231 347-648 40-301 (305)
214 2ghs_A AGR_C_1268P; regucalcin 99.4 3.1E-10 1.1E-14 118.8 29.1 209 353-597 50-278 (326)
215 2qe8_A Uncharacterized protein 99.4 6.7E-11 2.3E-15 124.8 23.4 265 352-700 17-310 (343)
216 2mad_H Methylamine dehydrogena 99.3 2.5E-09 8.6E-14 113.9 34.4 228 426-699 70-337 (373)
217 2mad_H Methylamine dehydrogena 99.3 1.2E-09 4.2E-14 116.4 31.9 241 356-658 70-354 (373)
218 2ghs_A AGR_C_1268P; regucalcin 99.3 7.7E-10 2.7E-14 115.7 29.9 220 424-700 51-291 (326)
219 3dr2_A Exported gluconolactona 99.3 2.3E-10 7.9E-15 118.4 25.3 227 417-702 40-298 (305)
220 3iuj_A Prolyl endopeptidase; h 99.2 2E-10 6.7E-15 133.2 21.1 197 420-655 127-360 (693)
221 3sjl_D Methylamine dehydrogena 99.2 9.3E-10 3.2E-14 116.3 23.6 244 356-659 82-368 (386)
222 3sjl_D Methylamine dehydrogena 99.2 2.6E-09 9E-14 112.9 25.5 255 360-698 41-349 (386)
223 2hz6_A Endoplasmic reticulum t 99.2 8.2E-12 2.8E-16 133.2 5.6 185 432-659 8-197 (369)
224 3c75_H MADH, methylamine dehyd 99.2 5.4E-09 1.8E-13 112.4 25.4 77 426-502 122-217 (426)
225 2hz6_A Endoplasmic reticulum t 99.1 2.5E-11 8.7E-16 129.4 4.7 188 362-586 8-200 (369)
226 1yiq_A Quinohemoprotein alcoho 99.1 1.4E-08 4.7E-13 117.2 25.4 186 441-661 181-512 (689)
227 1kb0_A Quinohemoprotein alcoho 99.0 1.9E-08 6.5E-13 115.7 24.7 241 362-661 127-514 (677)
228 2ece_A 462AA long hypothetical 99.0 4.7E-08 1.6E-12 104.0 23.8 151 428-579 88-290 (462)
229 3hxj_A Pyrrolo-quinoline quino 99.0 2.7E-08 9.2E-13 103.3 21.2 209 433-702 107-315 (330)
230 1npe_A Nidogen, entactin; glyc 99.0 7.5E-07 2.6E-11 89.8 31.2 158 422-580 36-200 (267)
231 1mda_H Methylamine dehydrogena 99.0 2.2E-08 7.6E-13 105.8 20.4 194 426-658 69-350 (368)
232 2qe8_A Uncharacterized protein 99.0 1E-08 3.5E-13 107.9 17.3 211 350-597 65-298 (343)
233 2ece_A 462AA long hypothetical 98.9 1.9E-07 6.5E-12 99.4 24.7 194 358-577 88-351 (462)
234 3c75_H MADH, methylamine dehyd 98.9 2.3E-07 7.7E-12 99.8 24.9 186 431-656 82-297 (426)
235 3q7m_A Lipoprotein YFGL, BAMB; 98.9 1.8E-06 6.1E-11 91.7 30.6 224 362-659 102-342 (376)
236 1fwx_A Nitrous oxide reductase 98.9 5.8E-08 2E-12 106.9 18.3 227 431-699 99-406 (595)
237 1yiq_A Quinohemoprotein alcoho 98.8 1.9E-07 6.4E-12 107.7 23.3 152 433-585 121-345 (689)
238 1kb0_A Quinohemoprotein alcoho 98.8 2E-07 6.7E-12 107.3 23.2 153 433-586 128-354 (677)
239 2fp8_A Strictosidine synthase; 98.8 8E-07 2.7E-11 92.3 25.7 267 340-655 7-314 (322)
240 3hxj_A Pyrrolo-quinoline quino 98.8 3.8E-07 1.3E-11 94.6 23.2 219 363-655 107-325 (330)
241 3q7m_A Lipoprotein YFGL, BAMB; 98.8 2.7E-06 9.1E-11 90.3 30.1 188 432-661 102-303 (376)
242 1mda_H Methylamine dehydrogena 98.8 9.2E-08 3.2E-12 101.1 17.5 208 356-589 69-357 (368)
243 1fwx_A Nitrous oxide reductase 98.8 7.4E-07 2.5E-11 98.1 24.3 188 361-578 99-361 (595)
244 1npe_A Nidogen, entactin; glyc 98.8 1E-05 3.6E-10 81.3 31.0 215 353-597 37-258 (267)
245 2iwa_A Glutamine cyclotransfer 98.7 1.6E-06 5.6E-11 86.7 23.3 193 424-655 23-238 (266)
246 1k3i_A Galactose oxidase precu 98.7 7.7E-07 2.6E-11 102.2 23.4 274 356-700 190-530 (656)
247 4a2l_A BT_4663, two-component 98.7 5.4E-05 1.9E-09 88.8 39.0 276 351-698 214-515 (795)
248 2iwa_A Glutamine cyclotransfer 98.7 7E-06 2.4E-10 82.1 24.8 200 348-579 15-238 (266)
249 4a2l_A BT_4663, two-component 98.6 7E-05 2.4E-09 87.9 37.2 269 352-698 310-603 (795)
250 2p4o_A Hypothetical protein; p 98.6 3.4E-05 1.2E-09 79.3 29.5 212 352-597 32-262 (306)
251 3nol_A Glutamine cyclotransfer 98.6 5.6E-06 1.9E-10 81.9 21.9 158 424-587 45-210 (262)
252 1kv9_A Type II quinohemoprotei 98.6 3.2E-06 1.1E-10 97.1 23.2 185 442-661 177-495 (668)
253 2ad6_A Methanol dehydrogenase 98.6 1.6E-05 5.4E-10 89.4 28.3 111 434-544 161-343 (571)
254 3nol_A Glutamine cyclotransfer 98.5 1.1E-05 3.7E-10 79.9 21.6 200 455-698 33-243 (262)
255 2p4o_A Hypothetical protein; p 98.5 0.00011 3.7E-09 75.5 29.9 226 422-700 32-277 (306)
256 2fp8_A Strictosidine synthase; 98.5 2.7E-05 9.2E-10 80.6 25.0 152 423-578 20-216 (322)
257 1w6s_A Methanol dehydrogenase 98.5 5E-05 1.7E-09 85.5 27.7 104 441-544 180-350 (599)
258 1kv9_A Type II quinohemoprotei 98.5 1.3E-05 4.6E-10 91.8 23.5 154 433-586 117-341 (668)
259 2xe4_A Oligopeptidase B; hydro 98.4 2.5E-05 8.4E-10 91.0 25.7 193 353-576 175-398 (751)
260 3nok_A Glutaminyl cyclase; bet 98.4 1.3E-05 4.3E-10 79.3 19.3 155 424-586 57-218 (268)
261 2xbg_A YCF48-like protein; pho 98.4 0.0016 5.5E-08 67.4 36.8 268 350-699 34-311 (327)
262 3mbr_X Glutamine cyclotransfer 98.4 4.9E-05 1.7E-09 74.5 23.4 159 422-586 21-187 (243)
263 3v64_C Agrin; beta propeller, 98.4 0.00029 1E-08 73.8 31.1 158 422-579 73-235 (349)
264 3qqz_A Putative uncharacterize 98.4 0.00022 7.6E-09 70.7 26.5 168 416-585 21-210 (255)
265 3mbr_X Glutamine cyclotransfer 98.4 0.00011 3.7E-09 72.1 23.8 200 455-699 11-223 (243)
266 3v9f_A Two-component system se 98.3 0.00049 1.7E-08 80.5 33.9 280 351-697 257-555 (781)
267 3v9f_A Two-component system se 98.3 0.00037 1.3E-08 81.5 32.7 275 351-698 312-600 (781)
268 1flg_A Protein (quinoprotein e 98.3 0.00014 4.9E-09 81.7 27.5 104 442-545 183-364 (582)
269 3v65_B Low-density lipoprotein 98.3 0.00049 1.7E-08 73.2 30.3 158 422-579 116-278 (386)
270 3nok_A Glutaminyl cyclase; bet 98.3 7.1E-05 2.4E-09 74.0 21.2 185 349-567 50-254 (268)
271 2xe4_A Oligopeptidase B; hydro 98.3 3E-05 1E-09 90.3 21.9 153 423-578 175-354 (751)
272 3v64_C Agrin; beta propeller, 98.3 0.00045 1.6E-08 72.3 28.6 211 348-587 69-284 (349)
273 1ijq_A LDL receptor, low-densi 98.3 0.002 6.9E-08 66.3 32.9 156 422-578 30-195 (316)
274 3qqz_A Putative uncharacterize 98.2 0.00054 1.9E-08 67.9 26.1 198 349-576 24-251 (255)
275 3tc9_A Hypothetical hydrolase; 98.2 0.00024 8.1E-09 76.8 25.3 151 354-535 139-300 (430)
276 4hw6_A Hypothetical protein, I 98.2 0.00037 1.3E-08 75.3 26.2 196 354-580 141-375 (433)
277 3v65_B Low-density lipoprotein 98.2 0.0007 2.4E-08 72.0 27.8 219 349-596 113-336 (386)
278 3p5b_L Low density lipoprotein 98.2 0.0045 1.5E-07 66.0 34.1 161 420-580 110-279 (400)
279 2ad6_A Methanol dehydrogenase 98.1 0.00054 1.8E-08 76.9 27.0 153 433-586 115-343 (571)
280 1w6s_A Methanol dehydrogenase 98.1 0.00041 1.4E-08 78.0 25.7 148 436-586 124-350 (599)
281 3p5b_L Low density lipoprotein 98.1 0.005 1.7E-07 65.7 32.3 223 348-595 108-337 (400)
282 1ijq_A LDL receptor, low-densi 98.1 0.0062 2.1E-07 62.6 31.5 212 349-586 27-246 (316)
283 3sov_A LRP-6, low-density lipo 98.1 0.0022 7.7E-08 66.0 28.0 158 422-579 35-198 (318)
284 3sov_A LRP-6, low-density lipo 98.0 0.0022 7.6E-08 66.1 27.2 206 353-586 36-246 (318)
285 3tc9_A Hypothetical hydrolase; 98.0 0.00081 2.8E-08 72.6 24.0 153 423-577 138-300 (430)
286 1k3i_A Galactose oxidase precu 97.9 0.00011 3.7E-09 84.2 16.4 115 426-540 190-327 (656)
287 1flg_A Protein (quinoprotein e 97.9 0.0038 1.3E-07 70.0 28.4 154 433-587 117-364 (582)
288 2xbg_A YCF48-like protein; pho 97.8 0.0091 3.1E-07 61.7 27.3 169 422-597 122-300 (327)
289 2p9w_A MAL S 1 allergenic prot 97.8 0.0044 1.5E-07 63.3 23.6 154 424-578 15-215 (334)
290 3kya_A Putative phosphatase; s 97.8 0.0064 2.2E-07 66.1 25.9 200 353-579 140-410 (496)
291 3m0c_C LDL receptor, low-densi 97.8 0.018 6.1E-07 66.7 30.9 162 420-581 422-592 (791)
292 3amr_A 3-phytase; beta-propell 97.8 0.0047 1.6E-07 63.6 23.0 142 432-577 39-209 (355)
293 3m0c_C LDL receptor, low-densi 97.7 0.017 5.8E-07 66.9 30.5 214 348-586 420-640 (791)
294 3s94_A LRP-6, low-density lipo 97.7 0.087 3E-06 59.3 35.3 209 350-586 38-251 (619)
295 3amr_A 3-phytase; beta-propell 97.7 0.0079 2.7E-07 61.9 24.0 193 362-586 39-272 (355)
296 2p9w_A MAL S 1 allergenic prot 97.7 0.011 3.7E-07 60.4 24.6 197 354-578 15-265 (334)
297 1n7d_A LDL receptor, low-densi 97.6 0.00082 2.8E-08 77.3 16.1 158 422-579 406-572 (699)
298 3s94_A LRP-6, low-density lipo 97.6 0.044 1.5E-06 61.8 29.7 159 422-580 40-204 (619)
299 2ism_A Putative oxidoreductase 97.6 0.026 9E-07 58.8 26.2 199 350-577 29-296 (352)
300 4a0p_A LRP6, LRP-6, low-densit 97.5 0.066 2.3E-06 60.4 30.6 158 422-580 37-199 (628)
301 2vpj_A Kelch-like protein 12; 97.5 0.0096 3.3E-07 60.3 21.4 135 443-581 31-187 (301)
302 4hw6_A Hypothetical protein, I 97.5 0.014 4.8E-07 62.8 23.5 153 423-577 229-432 (433)
303 3a9g_A Putative uncharacterize 97.5 0.094 3.2E-06 54.6 29.1 203 347-578 24-296 (354)
304 3kya_A Putative phosphatase; s 97.5 0.037 1.3E-06 60.0 26.5 153 423-576 140-339 (496)
305 2vpj_A Kelch-like protein 12; 97.5 0.0095 3.2E-07 60.4 20.7 144 432-581 62-234 (301)
306 1n7d_A LDL receptor, low-densi 97.5 0.00074 2.5E-08 77.6 13.6 211 352-587 406-623 (699)
307 4a0p_A LRP6, LRP-6, low-densit 97.4 0.13 4.5E-06 57.9 30.9 203 352-585 37-244 (628)
308 2ism_A Putative oxidoreductase 97.4 0.039 1.3E-06 57.5 24.7 138 423-565 32-220 (352)
309 3ii7_A Kelch-like protein 7; p 97.4 0.019 6.6E-07 58.2 21.7 141 435-580 14-180 (306)
310 2g8s_A Glucose/sorbosone dehyd 97.4 0.096 3.3E-06 54.5 27.3 150 351-522 17-214 (353)
311 2xn4_A Kelch-like protein 2; s 97.3 0.023 8E-07 57.5 21.0 132 444-580 31-184 (302)
312 3a9g_A Putative uncharacterize 97.3 0.13 4.4E-06 53.6 27.0 139 422-564 29-214 (354)
313 2xn4_A Kelch-like protein 2; s 97.2 0.022 7.6E-07 57.7 20.5 145 432-581 61-232 (302)
314 3ii7_A Kelch-like protein 7; p 97.2 0.045 1.5E-06 55.5 22.3 145 432-580 55-227 (306)
315 2xzh_A Clathrin heavy chain 1; 97.2 0.26 8.9E-06 49.8 29.4 204 358-594 73-306 (365)
316 1bpo_A Protein (clathrin); cla 97.1 0.39 1.3E-05 50.5 31.8 206 357-595 71-306 (494)
317 1zgk_A Kelch-like ECH-associat 97.0 0.036 1.2E-06 56.4 19.6 143 432-580 24-195 (308)
318 3das_A Putative oxidoreductase 96.9 0.5 1.7E-05 48.7 30.8 210 346-579 26-293 (347)
319 3sre_A PON1, serum paraoxonase 96.9 0.25 8.4E-06 51.3 24.1 153 423-578 51-252 (355)
320 3sre_A PON1, serum paraoxonase 96.8 0.14 4.9E-06 53.0 22.1 151 422-576 112-296 (355)
321 1cru_A Protein (soluble quinop 96.8 0.72 2.5E-05 49.6 28.5 112 351-482 26-162 (454)
322 4asc_A Kelch repeat and BTB do 96.8 0.088 3E-06 53.6 20.4 147 431-580 44-223 (315)
323 4asc_A Kelch repeat and BTB do 96.8 0.11 3.6E-06 53.0 21.0 141 436-580 8-176 (315)
324 3pbp_A Nucleoporin NUP82; beta 96.8 0.13 4.4E-06 54.1 21.1 142 430-574 29-208 (452)
325 2g8s_A Glucose/sorbosone dehyd 96.7 0.31 1E-05 50.6 23.8 141 422-564 18-214 (353)
326 3ott_A Two-component system se 96.7 1.4 4.6E-05 50.8 35.3 194 351-581 21-223 (758)
327 1zgk_A Kelch-like ECH-associat 96.7 0.071 2.4E-06 54.1 18.5 144 432-581 70-243 (308)
328 1cru_A Protein (soluble quinop 96.5 1.2 4.1E-05 47.9 28.3 103 422-524 27-162 (454)
329 2woz_A Kelch repeat and BTB do 96.5 0.28 9.4E-06 49.9 21.2 147 430-580 54-233 (318)
330 3ei3_A DNA damage-binding prot 96.4 2.3 7.8E-05 51.3 31.8 187 349-567 551-756 (1158)
331 2woz_A Kelch repeat and BTB do 96.4 0.36 1.2E-05 49.0 21.5 135 444-580 25-186 (318)
332 1bpo_A Protein (clathrin); cla 96.3 1.4 4.7E-05 46.4 28.2 242 427-701 71-331 (494)
333 3pbp_A Nucleoporin NUP82; beta 96.3 0.32 1.1E-05 51.1 19.9 103 474-578 31-158 (452)
334 1tl2_A L10, protein (tachylect 96.1 0.3 1E-05 46.6 17.3 135 433-574 4-159 (236)
335 2uvk_A YJHT; unknown function, 96.1 0.17 5.7E-06 52.5 17.2 93 432-526 19-128 (357)
336 3das_A Putative oxidoreductase 95.9 1.8 6.2E-05 44.5 30.0 146 417-564 27-218 (347)
337 1xi4_A Clathrin heavy chain; a 95.9 0.25 8.6E-06 59.5 18.9 202 359-593 73-304 (1630)
338 2be1_A Serine/threonine-protei 95.8 0.043 1.5E-06 56.5 10.9 142 434-575 11-181 (339)
339 1tl2_A L10, protein (tachylect 95.8 0.17 5.7E-06 48.3 14.0 140 423-571 42-203 (236)
340 3s25_A Hypothetical 7-bladed b 95.6 1.5 5.3E-05 44.1 21.4 140 427-580 58-218 (302)
341 2xzh_A Clathrin heavy chain 1; 95.3 2.8 9.5E-05 42.5 26.8 207 346-582 101-336 (365)
342 3ei3_A DNA damage-binding prot 95.2 7.7 0.00027 46.8 31.7 150 422-575 514-679 (1158)
343 2be1_A Serine/threonine-protei 95.2 0.27 9.1E-06 50.6 14.1 141 440-583 64-236 (339)
344 2uvk_A YJHT; unknown function, 95.0 0.71 2.4E-05 47.5 17.5 26 633-658 315-346 (357)
345 3ott_A Two-component system se 95.0 6.6 0.00023 45.0 34.8 190 352-580 63-262 (758)
346 1xi4_A Clathrin heavy chain; a 95.0 0.78 2.7E-05 55.4 18.9 240 429-701 73-331 (1630)
347 2zwa_A Leucine carboxyl methyl 94.5 2.3 7.9E-05 48.4 21.2 150 432-582 451-639 (695)
348 3sbq_A Nitrous-oxide reductase 94.4 3.2 0.00011 45.1 20.2 71 507-578 324-408 (638)
349 2zwa_A Leucine carboxyl methyl 94.2 1.2 3.9E-05 50.9 18.1 150 431-580 396-579 (695)
350 3qhy_B Beta-lactamase inhibito 94.1 3.8 0.00013 40.7 19.5 144 423-578 64-207 (282)
351 3s25_A Hypothetical 7-bladed b 94.1 5.5 0.00019 40.0 23.7 138 428-579 110-256 (302)
352 3sbq_A Nitrous-oxide reductase 92.8 5.6 0.00019 43.2 18.8 206 366-578 73-354 (638)
353 1uuj_A Platelet-activating fac 90.6 0.27 9.1E-06 39.0 4.3 30 3-32 10-39 (88)
354 3qhy_B Beta-lactamase inhibito 88.6 20 0.00069 35.3 19.3 144 423-578 25-168 (282)
355 2wg3_C Hedgehog-interacting pr 87.6 32 0.0011 36.6 29.5 30 352-381 14-44 (463)
356 2xtc_A F-box-like/WD repeat-co 82.1 1.6 5.6E-05 34.7 4.5 36 1-36 3-38 (90)
357 4gq2_M Nucleoporin NUP120; bet 79.3 58 0.002 38.2 18.7 38 506-543 236-273 (950)
358 4gq2_M Nucleoporin NUP120; bet 73.5 45 0.0016 39.2 15.6 39 422-460 236-274 (950)
359 2wg3_C Hedgehog-interacting pr 73.1 1E+02 0.0034 32.7 27.5 103 423-525 15-158 (463)
360 1iap_A Guanine nucleotide exch 70.7 4.2 0.00014 37.5 4.5 32 94-125 32-63 (211)
361 3b7f_A Glycosyl hydrolase, BNR 65.8 1.2E+02 0.0042 30.9 20.8 137 434-574 23-204 (394)
362 1suu_A DNA gyrase subunit A; t 61.8 1.3E+02 0.0045 29.9 26.0 145 431-578 6-181 (312)
363 3uc1_A DNA gyrase subunit A; D 58.7 1.5E+02 0.0052 29.6 23.6 145 432-577 108-278 (327)
364 3b7f_A Glycosyl hydrolase, BNR 56.9 1.7E+02 0.0059 29.7 23.9 149 422-575 55-259 (394)
365 3no0_A DNA gyrase subunit A; D 56.7 1.5E+02 0.0051 28.9 22.3 155 422-577 24-195 (276)
366 4hvt_A Ritya.17583.B, post-pro 56.3 2.5E+02 0.0087 31.5 24.5 135 443-580 216-383 (711)
367 3no0_A DNA gyrase subunit A; D 56.1 1.5E+02 0.0052 28.8 22.7 153 422-577 68-245 (276)
368 3cx8_B RHO guanine nucleotide 56.0 5.5 0.00019 36.7 2.4 32 94-125 50-81 (203)
369 3ab3_B RHO guanine nucleotide 53.2 3.4 0.00012 38.9 0.6 32 94-125 86-117 (246)
370 3q6k_A 43.2 kDa salivary prote 53.1 2.1E+02 0.007 29.4 24.1 124 422-569 87-245 (381)
371 4hvt_A Ritya.17583.B, post-pro 50.8 3.1E+02 0.011 30.8 22.5 153 424-579 131-330 (711)
372 4fhn_B Nucleoporin NUP120; pro 46.9 48 0.0016 39.9 9.4 38 507-544 239-276 (1139)
373 4fhn_B Nucleoporin NUP120; pro 46.7 4.4E+02 0.015 31.4 19.4 37 549-585 239-275 (1139)
374 2d68_A FOP, FGFR1OP; alpha hel 46.2 21 0.00071 27.9 3.9 29 5-33 20-48 (82)
375 3zwu_A Alkaline phosphatase PH 45.4 68 0.0023 35.2 9.5 59 507-565 477-548 (592)
376 1sqj_A OXG-RCBH, oligoxylogluc 41.5 4.4E+02 0.015 29.9 27.1 146 351-526 14-190 (789)
377 4a9v_A PHOX; hydrolase, beta-p 41.4 92 0.0031 34.0 9.5 61 506-566 476-549 (592)
378 3f7f_A Nucleoporin NUP120; nuc 39.4 1.5E+02 0.0051 33.3 11.0 38 422-461 222-259 (729)
379 1suu_A DNA gyrase subunit A; t 39.3 2.9E+02 0.01 27.2 28.0 196 361-578 6-231 (312)
380 3uc1_A DNA gyrase subunit A; D 38.6 3.1E+02 0.011 27.3 22.6 154 422-577 42-227 (327)
381 1zi0_A DNA gyrase subunit A; b 36.4 3.2E+02 0.011 26.8 27.6 195 361-577 1-225 (307)
382 3f7f_A Nucleoporin NUP120; nuc 34.7 48 0.0016 37.3 6.1 37 506-544 222-258 (729)
383 3mez_B Mannose-specific lectin 29.2 2.3E+02 0.008 23.0 10.1 23 552-576 60-82 (113)
384 1zi0_A DNA gyrase subunit A; b 28.6 4.3E+02 0.015 25.9 25.7 144 431-577 1-175 (307)
385 3kci_A Probable E3 ubiquitin-p 28.0 4.8E+02 0.016 26.3 29.1 151 423-577 106-292 (389)
386 3kci_A Probable E3 ubiquitin-p 26.7 5.1E+02 0.017 26.1 28.8 151 423-577 54-240 (389)
387 3l6v_A GYRA, DNA gyrase subuni 26.0 5.3E+02 0.018 26.1 28.8 154 360-534 4-178 (370)
388 3zwu_A Alkaline phosphatase PH 25.8 2E+02 0.0068 31.5 9.1 59 423-481 477-548 (592)
389 2eap_A Lymphocyte cytosolic pr 24.9 48 0.0017 26.0 2.8 18 9-26 26-43 (90)
390 4a9v_A PHOX; hydrolase, beta-p 23.7 2.7E+02 0.0092 30.4 9.4 60 465-524 477-549 (592)
391 1wp5_A Topoisomerase IV; broke 20.8 6.1E+02 0.021 25.0 26.1 233 361-653 3-276 (323)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3e-44 Score=391.94 Aligned_cols=281 Identities=28% Similarity=0.498 Sum_probs=265.2
Q ss_pred EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (704)
Q Consensus 346 ~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (704)
++.+|.+.|+|++|+|++.+|++|+.||.|+|||+.+ ......+.+|.+.|.
T Consensus 103 ~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~----------------------------~~~~~~l~~h~~~V~ 154 (410)
T 1vyh_C 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYET----------------------------GDFERTLKGHTDSVQ 154 (410)
T ss_dssp EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTT----------------------------CCCCEEECCCSSCEE
T ss_pred eecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC----------------------------CcEEEEEeccCCcEE
Confidence 4679999999999999999999999999999999875 234466789999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCC
Q 005277 426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL 505 (704)
Q Consensus 426 ~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~ 505 (704)
+++|+|++++|++|+.||+|++||+.+++++..+.+|...|++++|+|++.++++|+.|++|++||++++.++..+.+|.
T Consensus 155 ~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~ 234 (410)
T 1vyh_C 155 DISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHR 234 (410)
T ss_dssp EEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecC--------------------CCEEEEE
Q 005277 506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD--------------------GRYMASG 565 (704)
Q Consensus 506 ~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spd--------------------g~~l~sg 565 (704)
..|.++.|+|++.+|++|+.|++|++||++++.+...+.+|...|.+++|+|+ |.+|++|
T Consensus 235 ~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg 314 (410)
T 1vyh_C 235 EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG 314 (410)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE
T ss_pred ccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999996 6799999
Q ss_pred eCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCC
Q 005277 566 DEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADC 645 (704)
Q Consensus 566 ~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg 645 (704)
+.||.|++||++++.++..+.+|...|.++.| +|++.+|++|+.||
T Consensus 315 s~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~----------------------------------~~~g~~l~s~s~D~ 360 (410)
T 1vyh_C 315 SRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF----------------------------------HSGGKFILSCADDK 360 (410)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCSSCEEEEEE----------------------------------CSSSSCEEEEETTT
T ss_pred eCCCeEEEEECCCCceEEEEECCCCcEEEEEE----------------------------------cCCCCEEEEEeCCC
Confidence 99999999999999999999999999999999 99999999999999
Q ss_pred cEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 646 TVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 646 ~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
+|++||+.++. .+..+..|...|.+++|+|++.+||+|+.||+
T Consensus 361 ~i~vwd~~~~~---------------~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~ 403 (410)
T 1vyh_C 361 TLRVWDYKNKR---------------CMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQT 403 (410)
T ss_dssp EEEEECCTTSC---------------CCEEEECCSSCEEEEEECSSSSCEEEEETTSE
T ss_pred eEEEEECCCCc---------------eEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCc
Confidence 99999997754 35567788999999999999999999999985
No 2
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.4e-43 Score=371.81 Aligned_cols=284 Identities=22% Similarity=0.361 Sum_probs=262.1
Q ss_pred EEEeeCCCCEEEEEEcCC----CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCC
Q 005277 345 YTFINTHNGLNCASISQD----GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH 420 (704)
Q Consensus 345 ~~~~~~~~~V~~~~fs~d----g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 420 (704)
....+|.+.|++++|+|+ +.+|++|+.|++|+||++.... ......+.+|
T Consensus 26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~--------------------------~~~~~~l~gh 79 (321)
T 3ow8_A 26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDER--------------------------LDLQWSLEGH 79 (321)
T ss_dssp EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTE--------------------------EEEEEEECCC
T ss_pred eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCC--------------------------eeeeeeeccC
Confidence 345689999999999985 6799999999999999986411 1233457899
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEE
Q 005277 421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI 500 (704)
Q Consensus 421 ~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~ 500 (704)
...|.+++|++++.++++++.|++|++||+.+++.+..+..|...+++++|+|++++|++|+.||.+++|++++++....
T Consensus 80 ~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~ 159 (321)
T 3ow8_A 80 QLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYS 159 (321)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEE
T ss_pred CCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCe
Q 005277 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR 580 (704)
Q Consensus 501 ~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~ 580 (704)
+..|...|.+++|+|++++|++|+.||.|++||+++++.+..+.+|..+|.+++|+|+|++|++|+.||.|++||+++++
T Consensus 160 ~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~ 239 (321)
T 3ow8_A 160 LDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN 239 (321)
T ss_dssp EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCC
T ss_pred ecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccc
Q 005277 581 CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLK 660 (704)
Q Consensus 581 ~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~ 660 (704)
.+..+.+|...|.+++| +|++.+|++|+.||+|+|||+.++.
T Consensus 240 ~~~~~~~h~~~v~~~~~----------------------------------sp~~~~l~s~s~D~~v~iwd~~~~~---- 281 (321)
T 3ow8_A 240 LAGTLSGHASWVLNVAF----------------------------------CPDDTHFVSSSSDKSVKVWDVGTRT---- 281 (321)
T ss_dssp EEEEECCCSSCEEEEEE----------------------------------CTTSSEEEEEETTSCEEEEETTTTE----
T ss_pred eeEEEcCCCCceEEEEE----------------------------------CCCCCEEEEEeCCCcEEEEeCCCCE----
Confidence 99999999999999999 9999999999999999999998764
Q ss_pred cccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 661 TEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 661 ~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
++..+..|..+|.+++|+|++.+|++|+.||+
T Consensus 282 -----------~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~ 313 (321)
T 3ow8_A 282 -----------CVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQE 313 (321)
T ss_dssp -----------EEEEECCCSSCEEEEEECTTSSEEEEEETTCC
T ss_pred -----------EEEEEcCCCCcEEEEEECCCCCEEEEEeCCCe
Confidence 35567788999999999999999999999985
No 3
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=9.1e-43 Score=364.22 Aligned_cols=283 Identities=23% Similarity=0.361 Sum_probs=256.2
Q ss_pred EEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC
Q 005277 344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (704)
Q Consensus 344 ~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 423 (704)
..++.+|.+.|++++|+|++++||+|+.||.|+|||+.+ ......+.+|..+
T Consensus 6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~----------------------------~~~~~~~~~~~~~ 57 (304)
T 2ynn_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYET----------------------------QVEVRSIQVTETP 57 (304)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTT----------------------------TEEEEEEECCSSC
T ss_pred EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC----------------------------CceeEEeeccCCc
Confidence 346889999999999999999999999999999999875 2345667789999
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceeEEec
Q 005277 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-QPLRIMA 502 (704)
Q Consensus 424 V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~-~~~~~~~ 502 (704)
|.+++|+|++++|++|+.|++|++||+.+++.+..+.+|...|++++|+|++.++++|+.||+|++||++++ .....+.
T Consensus 58 v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~ 137 (304)
T 2ynn_A 58 VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE 137 (304)
T ss_dssp EEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEEC
T ss_pred EEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999877 4557788
Q ss_pred cCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCCcEEEEee-cCCCCEEEEEEec--CCCEEEEEeCCCeEEEEeCCC
Q 005277 503 GHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSP--DGRYMASGDEDGTIMMWDLAS 578 (704)
Q Consensus 503 ~~~~~V~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~i~~l~~sp--dg~~l~sg~~dg~I~iwdl~~ 578 (704)
+|...|.+++|+| ++.+|++|+.|++|++||++++.....+. +|...+..+.|+| ++.+|++|+.||.|++||+++
T Consensus 138 ~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~ 217 (304)
T 2ynn_A 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT 217 (304)
T ss_dssp CCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTT
T ss_pred ccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCC
Confidence 9999999999999 67999999999999999998877655554 5668899999987 778999999999999999999
Q ss_pred CeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccc
Q 005277 579 GRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKV 658 (704)
Q Consensus 579 ~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~ 658 (704)
++++..+.+|...|.++.| +|++.+|++|+.||+|++||+.+++.
T Consensus 218 ~~~~~~~~~h~~~v~~~~~----------------------------------~p~~~~l~s~s~Dg~i~iWd~~~~~~- 262 (304)
T 2ynn_A 218 KSCVATLEGHMSNVSFAVF----------------------------------HPTLPIIISGSEDGTLKIWNSSTYKV- 262 (304)
T ss_dssp TEEEEEEECCSSCEEEEEE----------------------------------CSSSSEEEEEETTSCEEEEETTTCCE-
T ss_pred CccceeeCCCCCCEEEEEE----------------------------------CCCCCEEEEEcCCCeEEEEECCCCce-
Confidence 9999999999999999999 99999999999999999999987643
Q ss_pred cccccccCccccccccccCCCCcCeEEEEEccCCc--EEEEeecCCC
Q 005277 659 LKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL--LFAAGALSKT 703 (704)
Q Consensus 659 ~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~--~La~gs~dgt 703 (704)
+..+..+...+.+++|+|++. ++|+|+.+|.
T Consensus 263 --------------~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~ 295 (304)
T 2ynn_A 263 --------------EKTLNVGLERSWCIATHPTGRKNYIASGFDNGF 295 (304)
T ss_dssp --------------EEEECCSSSSEEEEEECTTCGGGCEEEEETTEE
T ss_pred --------------eeeccCCCccEEEEEECCCCCceEEEEecCCce
Confidence 456667788999999999875 6899988763
No 4
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.2e-42 Score=366.09 Aligned_cols=284 Identities=21% Similarity=0.366 Sum_probs=257.9
Q ss_pred eEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCc
Q 005277 342 VSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS 421 (704)
Q Consensus 342 ~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 421 (704)
.+..++.+|.+.|++++|+||+++|++|+.||.|+|||+.. ......+..|.
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~----------------------------~~~~~~~~~~~ 97 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYT----------------------------TNKVHAIPLRS 97 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT----------------------------CCEEEEEECSS
T ss_pred hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC----------------------------CCcceEeecCC
Confidence 34567889999999999999999999999999999999865 23445567899
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc----eeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 005277 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNA----NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP 497 (704)
Q Consensus 422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~----~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~ 497 (704)
..|.+++|+|++++|++|+.|+.|++|++.+.. ....+.+|...|.++.|++++. +++++.|++|++||+++++.
T Consensus 98 ~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~ 176 (340)
T 1got_B 98 SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQ 176 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEE
T ss_pred ccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcE
Confidence 999999999999999999999999999998753 4566789999999999998775 89999999999999999999
Q ss_pred eEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 005277 498 LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA 577 (704)
Q Consensus 498 ~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~ 577 (704)
+..+.+|...|.+++|+|+++++++|+.||+|++||++++.++..+.+|...|.+++|+|+|++|++|+.||.|++||++
T Consensus 177 ~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~ 256 (340)
T 1got_B 177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeeeecC--CCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCC
Q 005277 578 SGRCVTPLMG--HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTS 655 (704)
Q Consensus 578 ~~~~~~~~~~--h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~ 655 (704)
+++.+..+.. +...|.++.| +|+|.+|++|+.||.|++||+.++
T Consensus 257 ~~~~~~~~~~~~~~~~v~~~~~----------------------------------s~~g~~l~~g~~d~~i~vwd~~~~ 302 (340)
T 1got_B 257 ADQELMTYSHDNIICGITSVSF----------------------------------SKSGRLLLAGYDDFNCNVWDALKA 302 (340)
T ss_dssp TTEEEEEECCTTCCSCEEEEEE----------------------------------CTTSSEEEEEETTSEEEEEETTTC
T ss_pred CCcEEEEEccCCcccceEEEEE----------------------------------CCCCCEEEEECCCCeEEEEEcccC
Confidence 9988776653 3357899999 999999999999999999999876
Q ss_pred ccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 656 TKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 656 ~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
.. +..+.+|..+|.+++|+|+|.+||+|+.||+
T Consensus 303 ~~---------------~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~ 335 (340)
T 1got_B 303 DR---------------AGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 335 (340)
T ss_dssp CE---------------EEEEECCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred cE---------------eeEeecCCCcEEEEEEcCCCCEEEEEcCCcc
Confidence 43 4567789999999999999999999999985
No 5
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.2e-41 Score=361.87 Aligned_cols=284 Identities=24% Similarity=0.373 Sum_probs=256.1
Q ss_pred EEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCcc
Q 005277 343 SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG 422 (704)
Q Consensus 343 ~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 422 (704)
...++.+|.+.|+|++|+|++++||+|+.||+|+|||..+ ......+..|..
T Consensus 56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~----------------------------~~~~~~~~~~~~ 107 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFT----------------------------TNKEHAVTMPCT 107 (354)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT----------------------------CCEEEEEECSSS
T ss_pred EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCC----------------------------CCcceEEecCCC
Confidence 4457889999999999999999999999999999999764 123344567888
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC------ceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 005277 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLN------ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ 496 (704)
Q Consensus 423 ~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~------~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~ 496 (704)
.|.+++|+|++.+|++|+.|+.+++|++... .....+.+|...|.+++|+|++..+++|+.|++|++||+++++
T Consensus 108 ~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~ 187 (354)
T 2pbi_B 108 WVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ 187 (354)
T ss_dssp CCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC
T ss_pred CEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCe
Confidence 9999999999999999999999999998654 3456677899999999999999999999999999999999999
Q ss_pred eeEEeccCCCCeeEEEEcC--CCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEE
Q 005277 497 PLRIMAGHLSDVDCVRWHI--NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMW 574 (704)
Q Consensus 497 ~~~~~~~~~~~V~~v~~~p--~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iw 574 (704)
.+..+.+|...|.+++|+| ++++|++|+.||+|++||+++++++..+.+|...|.+++|+|+|.+|++|+.||.|++|
T Consensus 188 ~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lw 267 (354)
T 2pbi_B 188 LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLY 267 (354)
T ss_dssp EEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 9999999999999999988 47899999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCeeeeeecCC--CceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeC
Q 005277 575 DLASGRCVTPLMGH--TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDV 652 (704)
Q Consensus 575 dl~~~~~~~~~~~h--~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~ 652 (704)
|+++++.+..+..+ ...+.++.| +|++.+|++|+.||+|++||+
T Consensus 268 d~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------s~~g~~l~~g~~d~~i~vwd~ 313 (354)
T 2pbi_B 268 DLRADREVAIYSKESIIFGASSVDF----------------------------------SLSGRLLFAGYNDYTINVWDV 313 (354)
T ss_dssp ETTTTEEEEEECCTTCCSCEEEEEE----------------------------------CTTSSEEEEEETTSCEEEEET
T ss_pred ECCCCcEEEEEcCCCcccceeEEEE----------------------------------eCCCCEEEEEECCCcEEEEEC
Confidence 99998887766544 346788888 999999999999999999999
Q ss_pred CCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 653 TTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
.++.. +..+.+|..+|.+++|+|+|.+||+|+.||+
T Consensus 314 ~~~~~---------------~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~ 349 (354)
T 2pbi_B 314 LKGSR---------------VSILFGHENRVSTLRVSPDGTAFCSGSWDHT 349 (354)
T ss_dssp TTCSE---------------EEEECCCSSCEEEEEECTTSSCEEEEETTSE
T ss_pred CCCce---------------EEEEECCCCcEEEEEECCCCCEEEEEcCCCC
Confidence 87643 4566789999999999999999999999985
No 6
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3.8e-40 Score=344.93 Aligned_cols=288 Identities=25% Similarity=0.490 Sum_probs=257.8
Q ss_pred eEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCc
Q 005277 342 VSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS 421 (704)
Q Consensus 342 ~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 421 (704)
...+++.+|.+.|++++|+|++++||+|+.||.|++|++.. ......+.+|.
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~----------------------------~~~~~~~~~h~ 65 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD----------------------------GKFEKTISGHK 65 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT----------------------------CCEEEEECCCS
T ss_pred eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCC----------------------------cccchhhccCC
Confidence 34567889999999999999999999999999999999865 23445677899
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe
Q 005277 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM 501 (704)
Q Consensus 422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~ 501 (704)
..|.+++|+|++++|++|+.||+|++||+.+++.+..+.+|...|.+++|+|++.++++|+.||+|++||+++++.+..+
T Consensus 66 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 145 (312)
T 4ery_A 66 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 145 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred CceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEee-cCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCe
Q 005277 502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR 580 (704)
Q Consensus 502 ~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~ 580 (704)
..|...|.+++|+|++++|++|+.||.|++||+++++.+..+. .+...+.+++|+|+|++|++++.||.|++||+++++
T Consensus 146 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 225 (312)
T 4ery_A 146 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK 225 (312)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTE
T ss_pred cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 9999999999999999999999999999999999998887764 566789999999999999999999999999999999
Q ss_pred eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccc
Q 005277 581 CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLK 660 (704)
Q Consensus 581 ~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~ 660 (704)
.+..+.+|...+..+...+ ..+++.+|++|+.||.|++||+.++..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~l~sg~~dg~i~vwd~~~~~~--- 271 (312)
T 4ery_A 226 CLKTYTGHKNEKYCIFANF-------------------------------SVTGGKWIVSGSEDNLVYIWNLQTKEI--- 271 (312)
T ss_dssp EEEEECSSCCSSSCCCEEE-------------------------------ECSSSCEEEECCTTSCEEEEETTTCCE---
T ss_pred EEEEEEecCCceEEEEEEE-------------------------------EeCCCcEEEEECCCCEEEEEECCCchh---
Confidence 9999998876554443210 046788999999999999999987643
Q ss_pred cccccCccccccccccCCCCcCeEEEEEccCCcEEEEee--cCCC
Q 005277 661 TEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA--LSKT 703 (704)
Q Consensus 661 ~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs--~dgt 703 (704)
+..+..|..+|.+++|+|++.+|++++ .|++
T Consensus 272 ------------~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~ 304 (312)
T 4ery_A 272 ------------VQKLQGHTDVVISTACHPTENIIASAALENDKT 304 (312)
T ss_dssp ------------EEEECCCSSCEEEEEECSSSSEEEEEECTTTCC
T ss_pred ------------hhhhhccCCcEEEEeecCcCCceEEEEccCCcc
Confidence 556778999999999999999999987 3553
No 7
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=8e-41 Score=356.08 Aligned_cols=296 Identities=22% Similarity=0.413 Sum_probs=248.4
Q ss_pred EEEEEeeCCC-CEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCc
Q 005277 343 SFYTFINTHN-GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS 421 (704)
Q Consensus 343 ~~~~~~~~~~-~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 421 (704)
+..++.+|.. .|.+++|+|+|++||+|+.||.|+||++..... ........+|.
T Consensus 7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~-------------------------~~~~~~~~~h~ 61 (345)
T 3fm0_A 7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW-------------------------ICKSVLSEGHQ 61 (345)
T ss_dssp EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEE-------------------------EEEEEECSSCS
T ss_pred EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc-------------------------eeeeeeccccC
Confidence 4556778887 899999999999999999999999999875210 01122346899
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--ceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCc---
Q 005277 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLN--ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ--- 496 (704)
Q Consensus 422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~--~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~--- 496 (704)
+.|.+++|+|++++|++|+.|++|++|++..+ .++..+.+|..+|.+++|+|++++|++|+.|++|++||++...
T Consensus 62 ~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~ 141 (345)
T 3fm0_A 62 RTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE 141 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEE
T ss_pred CcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeE
Confidence 99999999999999999999999999999876 3577889999999999999999999999999999999998764
Q ss_pred eeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCc--EEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEE
Q 005277 497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE--CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMW 574 (704)
Q Consensus 497 ~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~--~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iw 574 (704)
.+..+.+|...|.+++|+|++++|++|+.|++|++||++++. +...+.+|...|.+++|+|+|++|++|+.||.|++|
T Consensus 142 ~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW 221 (345)
T 3fm0_A 142 CVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221 (345)
T ss_dssp EEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEe
Confidence 456778899999999999999999999999999999998875 456788999999999999999999999999999999
Q ss_pred eCCCC---------------eeeeeecC-CCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEE
Q 005277 575 DLASG---------------RCVTPLMG-HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLL 638 (704)
Q Consensus 575 dl~~~---------------~~~~~~~~-h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l 638 (704)
|.... +++..+.+ |...|++++| ++++..|
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~----------------------------------~~~~~~l 267 (345)
T 3fm0_A 222 RQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAW----------------------------------CQLTGAL 267 (345)
T ss_dssp EEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEE----------------------------------CTTTCCE
T ss_pred ccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEE----------------------------------ecCCCEE
Confidence 96422 23444444 7888999999 9999999
Q ss_pred EEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCC-cEEEEeecCCC
Q 005277 639 ASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRN-LLFAAGALSKT 703 (704)
Q Consensus 639 asgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g-~~La~gs~dgt 703 (704)
++++.|+.|++|+.......... ...........|...|.+|+|+|++ .+||+|+.||+
T Consensus 268 ~s~~~d~~i~vw~~~~~~~~~~~------~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~ 327 (345)
T 3fm0_A 268 ATACGDDAIRVFQEDPNSDPQQP------TFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGE 327 (345)
T ss_dssp EEEETTSCEEEEEECTTSCTTSC------CEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSC
T ss_pred EEEeCCCeEEEEEeCCCCCccee------eEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCc
Confidence 99999999999998765321100 0000122345789999999999998 59999999986
No 8
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=100.00 E-value=9.3e-44 Score=320.78 Aligned_cols=139 Identities=32% Similarity=0.584 Sum_probs=130.3
Q ss_pred cCChhhHHHHHHHHHHHHhhccccchhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhHHhhhHHHHHHHhcCCC
Q 005277 61 EDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLS 140 (704)
Q Consensus 61 ~~~~~~~~~~~~~l~~~~~~~ld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~~~~~~~~~~l~~~~~ 140 (704)
++||+.|+++|.+|++||++|||+||+||++|||||||||||+||++| .++|++||++|+++|..+|.++|++|++|++
T Consensus 4 ~~dp~~y~~~y~~Lr~wv~~sld~yk~EL~~lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~ 82 (148)
T 2j49_A 4 MNAPENYIRAYSMLKNWVDSSLEIYKPELSYIMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKDFHGSEINRLFSVNS 82 (148)
T ss_dssp ---CTTHHHHHHHHHHHHHTSCTTTHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHHHHHHHHHTTTTCCS
T ss_pred ccCHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHHHHHHHHHHHhcCCC
Confidence 578999999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred hhhhccCHHHHHhhcCceEEEEchhhHHHHHHHHhhcCcc---hHHHhhcceeEEEEccCCCC
Q 005277 141 PSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQST---KMLGIINERINFQVSPGQPS 200 (704)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---~~~~i~~~~~~~~~~~~~~~ 200 (704)
|+|+++|++++.||+|||+|+||++++++|++||+++++. +|++|||+||+|++++|.|+
T Consensus 83 p~hl~~n~~~~~fr~nKy~I~ls~~s~~lL~~fL~~~~~~gg~~ll~Iin~~i~i~v~~~~p~ 145 (148)
T 2j49_A 83 IDHIKENEVASAFQSHKYRITMSKTTLNLLLYFLNENESIGGSLIISVINQHLDPNIVESVTA 145 (148)
T ss_dssp HHHHHHCHHHHHHHSSCEEEEECHHHHHHHHHHHHHTGGGTHHHHHHHHHHHEEEEEC-----
T ss_pred HHHHhhCHHHHHHHhCCeEEEECHHHHHHHHHHHHHcCcccHHHHHHHHHHheeEeeeCCCCC
Confidence 9999999999999999999999999999999999999988 99999999999999998775
No 9
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3.4e-40 Score=347.24 Aligned_cols=292 Identities=26% Similarity=0.385 Sum_probs=253.6
Q ss_pred EEEeeCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC
Q 005277 345 YTFINTHNGLNCASISQDG-SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (704)
Q Consensus 345 ~~~~~~~~~V~~~~fs~dg-~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 423 (704)
.++.+|.+.|++++|+|++ ++|++|+.|++|++|++...... .......+.+|...
T Consensus 11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~-----------------------~~~~~~~~~~h~~~ 67 (319)
T 3frx_A 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK-----------------------FGVPVRSFKGHSHI 67 (319)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE-----------------------EEEEEEEEECCSSC
T ss_pred EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc-----------------------ccccceEEeCCccc
Confidence 4678999999999999964 89999999999999998642110 12345678899999
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc
Q 005277 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG 503 (704)
Q Consensus 424 V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~ 503 (704)
|.+++|+|++++|++|+.|++|++||+.+++.+..+.+|..+|.+++|+|++.++++|+.|++|++||++. ..+..+.+
T Consensus 68 v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~ 146 (319)
T 3frx_A 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLG 146 (319)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEEEECC
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999964 57788889
Q ss_pred CCCCeeEEEEcCC------CCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 005277 504 HLSDVDCVRWHIN------CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA 577 (704)
Q Consensus 504 ~~~~V~~v~~~p~------~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~ 577 (704)
|...|.+++|+|+ +..+++|+.|+.|++||+++++....+.+|...|.+++|+|+|++|++|+.||.|++||+.
T Consensus 147 h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~ 226 (319)
T 3frx_A 147 HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226 (319)
T ss_dssp CSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETT
T ss_pred cCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 9999999999985 4589999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcc
Q 005277 578 SGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTK 657 (704)
Q Consensus 578 ~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~ 657 (704)
+++.+..+..+ ..|.+++| +|++.+|++++.+ .+++|++.....
T Consensus 227 ~~~~~~~~~~~-~~v~~~~~----------------------------------sp~~~~la~~~~~-~i~v~~~~~~~~ 270 (319)
T 3frx_A 227 AKKAMYTLSAQ-DEVFSLAF----------------------------------SPNRYWLAAATAT-GIKVFSLDPQYL 270 (319)
T ss_dssp TTEEEEEEECC-SCEEEEEE----------------------------------CSSSSEEEEEETT-EEEEEEETTEEE
T ss_pred CCcEEEEecCC-CcEEEEEE----------------------------------cCCCCEEEEEcCC-CcEEEEeCcCee
Confidence 99999888755 57999999 9999999988865 599999987543
Q ss_pred ccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 658 VLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 658 ~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
....... .......+...|.+++|+|+|++|++|+.||+
T Consensus 271 ~~~~~~~-------~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~ 309 (319)
T 3frx_A 271 VDDLRPE-------FAGYSKAAEPHAVSLAWSADGQTLFAGYTDNV 309 (319)
T ss_dssp EEEECCC-------CTTCCGGGCCCEEEEEECTTSSEEEEEETTSC
T ss_pred eeccCcc-------ccccccCcCcceeEEEECCCCCEEEEeecCce
Confidence 3221110 01122345677999999999999999999985
No 10
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.8e-41 Score=364.63 Aligned_cols=291 Identities=23% Similarity=0.378 Sum_probs=254.9
Q ss_pred CCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccC
Q 005277 340 PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG 419 (704)
Q Consensus 340 p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (704)
...+..++.+|.+.|+|++|+|++++||+|+.||+|+|||+.+ ......+.+
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~----------------------------~~~~~~~~~ 106 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALT----------------------------SQKTHAIKL 106 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTT----------------------------TEEEEEEEC
T ss_pred eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCC----------------------------CccceEEec
Confidence 3456678899999999999999999999999999999999865 234556778
Q ss_pred CccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-------eeEEeecCCcCeeEEEEcCC-CCEEEEEeCCCeEEEEE
Q 005277 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA-------NLVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWS 491 (704)
Q Consensus 420 h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~-------~~~~~~~h~~~V~~v~~sp~-~~~l~sgs~dg~i~lwd 491 (704)
|...|.+++|+|++++|++|+.|++|++|++.+.. ....+.+|...|.++.|+|+ +..|++|+.|++|++||
T Consensus 107 h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd 186 (380)
T 3iz6_a 107 HCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWD 186 (380)
T ss_dssp CCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEEC
T ss_pred CCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEE
Confidence 99999999999999999999999999999987532 34567899999999999996 56799999999999999
Q ss_pred CCCCceeEEe-----ccCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCC-CCcEEEEeecCCCCEEEEEEecCCCEEEE
Q 005277 492 MDRIQPLRIM-----AGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVS-SGECVRIFIGHRSMILSLAMSPDGRYMAS 564 (704)
Q Consensus 492 ~~~~~~~~~~-----~~~~~~V~~v~~~p-~~~~l~tgs~dg~I~iwd~~-~~~~~~~~~~h~~~i~~l~~spdg~~l~s 564 (704)
+.+++.+..+ .+|...|.+++|+| ++++|++|+.||+|++||++ .+.++..+.+|.+.|.+++|+|+|++|++
T Consensus 187 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s 266 (380)
T 3iz6_a 187 VTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGT 266 (380)
T ss_dssp TTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEE
T ss_pred cCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEE
Confidence 9999988877 67899999999987 88999999999999999998 56788899999999999999999999999
Q ss_pred EeCCCeEEEEeCCCCeeeeeecCCC-------ceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCE
Q 005277 565 GDEDGTIMMWDLASGRCVTPLMGHT-------SCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSL 637 (704)
Q Consensus 565 g~~dg~I~iwdl~~~~~~~~~~~h~-------~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 637 (704)
|+.||.|++||+++++.+..+..+. ..|++++| +|+|.+
T Consensus 267 ~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----------------------------------s~~g~~ 312 (380)
T 3iz6_a 267 GSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAF----------------------------------SISGRL 312 (380)
T ss_dssp ECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEE----------------------------------CSSSSE
T ss_pred EcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEE----------------------------------CCCCCE
Confidence 9999999999999999888776543 24778888 999999
Q ss_pred EEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 638 LASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 638 lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
|++|+.||.|++||+..+...... ......|...|.+++|+|+|.+|++|+.||+
T Consensus 313 l~~g~~dg~i~vwd~~~~~~~~~~-----------~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~ 367 (380)
T 3iz6_a 313 LFAGYSNGDCYVWDTLLAEMVLNL-----------GTLQNSHEGRISCLGLSSDGSALCTGSWDKN 367 (380)
T ss_dssp EEEECTTSCEEEEETTTCCEEEEE-----------CCSCSSCCCCCCEEEECSSSSEEEEECTTSC
T ss_pred EEEEECCCCEEEEECCCCceEEEE-----------ecccCCCCCceEEEEECCCCCEEEEeeCCCC
Confidence 999999999999999876543211 1122578899999999999999999999986
No 11
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=100.00 E-value=2.8e-43 Score=323.38 Aligned_cols=152 Identities=28% Similarity=0.553 Sum_probs=144.9
Q ss_pred CCCchhhhccccccccccCChhhHHHHHHHHHHHHhhccccchhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh
Q 005277 44 ILNDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFRED 123 (704)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~ 123 (704)
+.+|+++++.+.+++ +++||+.|+++|.+||+||++|||+||+||++|||||||||||+||++|+.++|+.||++|+++
T Consensus 5 ~~~e~~~~~~~~~~~-~~~dp~~y~~~y~~L~~wv~~sld~yk~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~ 83 (156)
T 2nxp_A 5 VEDQPDVSAVLSAYN-QQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGD 83 (156)
T ss_dssp ---CCCHHHHHGGGS-SCCCTTSHHHHHHHHHHHHHTSCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG
T ss_pred ccCCchHHHHHHHhh-ccCCHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHH
Confidence 348889999998775 5679999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhHHHHHHHhcCCChhhhccCHHHHHhhcCceEEEEchhhHHHHHHHHhhcCcchHHHhhcceeEEEEcc
Q 005277 124 HEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQVSP 196 (704)
Q Consensus 124 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~ 196 (704)
|+.+|+++|++|++|++|+|+++|++++.||+|||+|+||++++++|++||+++++.+|++|||+||+|++++
T Consensus 84 ~~~~~~~~i~~L~~i~~~~~l~~n~~~~~fr~~Ky~I~ls~~s~~lL~~fL~~~~~~~ll~Iin~~i~i~v~~ 156 (156)
T 2nxp_A 84 QECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFD 156 (156)
T ss_dssp SCGGGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHHHHHHHHHHTTSTTCHHHHHHHHTCEEEEEC
T ss_pred hHHHHHHHHHHHhcCCCHHHHhhcHHHHHHHhCCeEEEECHHHHHHHHHHHHHcCChHHHHHHHHheeeeeeC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999863
No 12
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3e-40 Score=351.41 Aligned_cols=286 Identities=23% Similarity=0.272 Sum_probs=237.0
Q ss_pred eCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEE
Q 005277 349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS 428 (704)
Q Consensus 349 ~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 428 (704)
.|...|.+++|+|||++|++|+ |+++++||.......... .............|..+|.+++
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~v~~~~ 89 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPC-----------------AAPNEGFCSAGVQTEAGVADLT 89 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGG-----------------GTTCGGGCSEEEEESSCEEEEE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeecccc-----------------ccCCcceeeeeeccCCCEEEEE
Confidence 3566799999999999999887 778888874320000000 0000111222334667899999
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceeEE----eecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccC
Q 005277 429 FSPLGDFILSSSADTTIRLWSTKLNANLVC----YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH 504 (704)
Q Consensus 429 ~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~----~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~ 504 (704)
|+|++ .|++|+.||+|+|||+.+++.+.. ..+|...|++++|+|+|++|++|+.|++|++||+++++++..+.+|
T Consensus 90 ~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h 168 (344)
T 4gqb_B 90 WVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAH 168 (344)
T ss_dssp EETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred EeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCc
Confidence 99985 688999999999999999876544 3489999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEcCCC-CEEEEEECCCcEEEEeCCCCcEEEEee--cCCCCEEEEEEecC-CCEEEEEeCCCeEEEEeCCCCe
Q 005277 505 LSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECVRIFI--GHRSMILSLAMSPD-GRYMASGDEDGTIMMWDLASGR 580 (704)
Q Consensus 505 ~~~V~~v~~~p~~-~~l~tgs~dg~I~iwd~~~~~~~~~~~--~h~~~i~~l~~spd-g~~l~sg~~dg~I~iwdl~~~~ 580 (704)
...|.+++|+|++ .+|++|+.|++|++||++++++...+. .|...+.+++|+|+ +++|++|+.||.|++||+++++
T Consensus 169 ~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~ 248 (344)
T 4gqb_B 169 AAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS 248 (344)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--
T ss_pred CCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCc
Confidence 9999999999987 578999999999999999999888764 45667999999994 6789999999999999999999
Q ss_pred eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCC-CEEEEEeCCCcEEEEeCCCCcccc
Q 005277 581 CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEG-SLLASGSADCTVKLWDVTTSTKVL 659 (704)
Q Consensus 581 ~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g-~~lasgs~Dg~V~iWd~~~~~~~~ 659 (704)
++..+.+|...|+++.| +|++ ++|++|+.||+|+|||+.+++
T Consensus 249 ~~~~~~~h~~~v~~v~f----------------------------------sp~g~~~lasgs~D~~i~vwd~~~~~--- 291 (344)
T 4gqb_B 249 CVLSSAVHSQCVTGLVF----------------------------------SPHSVPFLASLSEDCSLAVLDSSLSE--- 291 (344)
T ss_dssp CCEEEECCSSCEEEEEE----------------------------------CSSSSCCEEEEETTSCEEEECTTCCE---
T ss_pred EEEEEcCCCCCEEEEEE----------------------------------ccCCCeEEEEEeCCCeEEEEECCCCc---
Confidence 99999999999999999 9987 589999999999999998754
Q ss_pred ccccccCccccccccccCCCCcCeEEEEEccCCc-EEEEeecCCC
Q 005277 660 KTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL-LFAAGALSKT 703 (704)
Q Consensus 660 ~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~-~La~gs~dgt 703 (704)
+..+.+|...|++|+|+|++. +|++|+.||+
T Consensus 292 -------------~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~ 323 (344)
T 4gqb_B 292 -------------LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQ 323 (344)
T ss_dssp -------------EEEECCCSSCEEEEEECSSSTTEEEEEETTSC
T ss_pred -------------EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCe
Confidence 234568999999999999985 7889999986
No 13
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.7e-39 Score=342.79 Aligned_cols=298 Identities=22% Similarity=0.343 Sum_probs=245.1
Q ss_pred EEEEEeeCCCCEEEEEE-----cC-CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceee
Q 005277 343 SFYTFINTHNGLNCASI-----SQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL 416 (704)
Q Consensus 343 ~~~~~~~~~~~V~~~~f-----s~-dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (704)
+..++.+|.+.|+|++| ++ ++++||+|+.|++|+||++....... ........
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~---------------------~~~~~~~~ 71 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNG---------------------YFGIPHKA 71 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSS---------------------BSEEEEEE
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccc---------------------ccccccch
Confidence 34567899999999999 77 89999999999999999987521100 01234566
Q ss_pred ccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 005277 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ 496 (704)
Q Consensus 417 ~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~ 496 (704)
+.+|...|.+++|+|++.+|++|+.|++|++||+.+++.+..+.+|..+|++++|+|+++++++|+.|++|++||+...
T Consensus 72 l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~- 150 (343)
T 2xzm_R 72 LTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE- 150 (343)
T ss_dssp ECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-
T ss_pred hccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999999999843
Q ss_pred eeEEec---cCCCCeeEEEEcCCC----------CEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEE
Q 005277 497 PLRIMA---GHLSDVDCVRWHINC----------NYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMA 563 (704)
Q Consensus 497 ~~~~~~---~~~~~V~~v~~~p~~----------~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~ 563 (704)
...... +|...|.+++|+|++ .+|++|+.||.|++|| .++.....+.+|...|.+++|+|+|++|+
T Consensus 151 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~ 229 (343)
T 2xzm_R 151 CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIA 229 (343)
T ss_dssp EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEE
Confidence 333333 688899999999987 7999999999999999 46677788899999999999999999999
Q ss_pred EEeCCCeEEEEeCCCC-eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEe
Q 005277 564 SGDEDGTIMMWDLASG-RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGS 642 (704)
Q Consensus 564 sg~~dg~I~iwdl~~~-~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs 642 (704)
+|+.||.|++||+... .....+ .+...|.+++| +|++.++++|
T Consensus 230 sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~----------------------------------sp~~~~la~~- 273 (343)
T 2xzm_R 230 TGGKDKKLLIWDILNLTYPQREF-DAGSTINQIAF----------------------------------NPKLQWVAVG- 273 (343)
T ss_dssp EEETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEE----------------------------------CSSSCEEEEE-
T ss_pred EEcCCCeEEEEECCCCcccceee-cCCCcEEEEEE----------------------------------CCCCCEEEEE-
Confidence 9999999999999544 333333 35567999999 9999887755
Q ss_pred CCCcEEEEeCCCCcccc--ccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 643 ADCTVKLWDVTTSTKVL--KTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 643 ~Dg~V~iWd~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
.|+.|++|++.+..... .... ...........|...|.+++|+|+|.+|++|+.||+
T Consensus 274 ~d~~v~iw~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~ 332 (343)
T 2xzm_R 274 TDQGVKIFNLMTQSKAPVCTIEA----EPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGV 332 (343)
T ss_dssp ESSCEEEEESSSCCSCSEEECCC----CSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSE
T ss_pred CCCCEEEEEeCCCCCCceEEeec----CcchhhhhhcCCCCceEEEEECCCCCeEEEecCCce
Confidence 57889999998765432 1110 000112223467788999999999999999999985
No 14
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.5e-39 Score=373.46 Aligned_cols=359 Identities=20% Similarity=0.273 Sum_probs=271.5
Q ss_pred cCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCcccc--ccccCCCC---CCCCccc
Q 005277 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAV--SSGLQGEN---DTTPRED 403 (704)
Q Consensus 329 ~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~--~~~~~~~~---~~~~~~~ 403 (704)
.+.+.+|....+.. ..++.+|...|++++|||||++||+|+.||.|+|||+........ ........ ...+...
T Consensus 38 ~~~v~l~~~~~~~~-~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~ 116 (611)
T 1nr0_A 38 GTSVYTVPVGSLTD-TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESK 116 (611)
T ss_dssp TTEEEEEETTCSSC-CEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSC
T ss_pred CCEEEEecCCCccc-CeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCC
Confidence 35778887654432 345679999999999999999999999999999999864322111 01000000 0000000
Q ss_pred --------------ccCCCCCccceeeccCCccCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeE
Q 005277 404 --------------IIGPNGRKRSYTLYQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWD 468 (704)
Q Consensus 404 --------------~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~ 468 (704)
+..-+ .......+.+|.+.|++++|+|++. .|++|+.|++|++||..+++....+.+|...|++
T Consensus 117 ~l~~~~~~~~~~~~v~~wd-~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~ 195 (611)
T 1nr0_A 117 RIAAVGEGRERFGHVFLFD-TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHS 195 (611)
T ss_dssp EEEEEECCSSCSEEEEETT-TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEE
T ss_pred EEEEEECCCCceeEEEEee-CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEE
Confidence 00000 1223345789999999999999987 5999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec-------cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEE
Q 005277 469 VQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA-------GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVR 541 (704)
Q Consensus 469 v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~-------~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~ 541 (704)
++|+|+|++|++|+.|++|++||+.+++.+..+. +|...|.+++|+|++++|++|+.|++|++||+.+++++.
T Consensus 196 v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~ 275 (611)
T 1nr0_A 196 VRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEK 275 (611)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred EEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceee
Confidence 9999999999999999999999999998888874 799999999999999999999999999999999876544
Q ss_pred E-------------------------------------------eecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 005277 542 I-------------------------------------------FIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578 (704)
Q Consensus 542 ~-------------------------------------------~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~ 578 (704)
. +.+|...|++++|+|+|++|++++.||.|++||+.+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~ 355 (611)
T 1nr0_A 276 TIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIST 355 (611)
T ss_dssp EEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred eecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Confidence 3 347899999999999999999999999999999999
Q ss_pred Ceeeeee-cCCCceeeeeeeee----eehcccccccccccccc------------------------c------------
Q 005277 579 GRCVTPL-MGHTSCVWTLAYRF----LLLVTNAYLKISDKVST------------------------G------------ 617 (704)
Q Consensus 579 ~~~~~~~-~~h~~~V~sl~~~~----~~~~~~~~~~~~~~~~~------------------------~------------ 617 (704)
++....+ .+|...|.++.|.. .....++.++++..... +
T Consensus 356 ~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~ 435 (611)
T 1nr0_A 356 GISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIA 435 (611)
T ss_dssp CCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEE
T ss_pred CceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEE
Confidence 9887766 57888888887731 11111112222211100 0
Q ss_pred -----ee--eeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEcc
Q 005277 618 -----FL--FYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSR 690 (704)
Q Consensus 618 -----~~--~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~ 690 (704)
.. ......+...+++|+|++|++|+.||+|++||+..+.. ..+.. ..|...|.+++|+|
T Consensus 436 ~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~-------------~~~~~-~~h~~~v~~v~fsp 501 (611)
T 1nr0_A 436 IYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASV-------------SEVKT-IVHPAEITSVAFSN 501 (611)
T ss_dssp EEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEE-------------EEEEE-EECSSCEEEEEECT
T ss_pred EEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCce-------------eeeec-cCCCCceEEEEECC
Confidence 00 00001233456799999999999999999999976432 11223 46888999999999
Q ss_pred CCcEEEEeecCCC
Q 005277 691 RNLLFAAGALSKT 703 (704)
Q Consensus 691 ~g~~La~gs~dgt 703 (704)
+|.+||+|+.|++
T Consensus 502 dg~~las~s~d~~ 514 (611)
T 1nr0_A 502 NGAFLVATDQSRK 514 (611)
T ss_dssp TSSEEEEEETTSC
T ss_pred CCCEEEEEcCCCC
Confidence 9999999999875
No 15
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-39 Score=344.90 Aligned_cols=285 Identities=22% Similarity=0.399 Sum_probs=234.0
Q ss_pred EEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeec-c-CC
Q 005277 343 SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY-Q-GH 420 (704)
Q Consensus 343 ~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~h 420 (704)
+..++.+|.+.|.+++|+|+ +||+|+.||.|+||++.... ......+ . +|
T Consensus 6 ~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~--------------------------~~~~~~~~~~~h 57 (330)
T 2hes_X 6 LIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDD--------------------------FTLIDVLDETAH 57 (330)
T ss_dssp EEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSC--------------------------CEEEEEECTTCC
T ss_pred cceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCC--------------------------eEEEEEEecCCc
Confidence 34567899999999999998 99999999999999986411 1122223 3 49
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC-------CceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECC
Q 005277 421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKL-------NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD 493 (704)
Q Consensus 421 ~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~-------~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~ 493 (704)
.++|.+++|+|++++|++|+.|++|++|++.. ...+..+.+|...|++++|+|++++|++|+.|++|++||++
T Consensus 58 ~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~ 137 (330)
T 2hes_X 58 KKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETD 137 (330)
T ss_dssp CSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECC
T ss_pred cCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEecc
Confidence 99999999999999999999999999999853 34567788999999999999999999999999999999995
Q ss_pred C----CceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC--cEEEEeecCCCCEEEEEEecC--CCEEEEE
Q 005277 494 R----IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG--ECVRIFIGHRSMILSLAMSPD--GRYMASG 565 (704)
Q Consensus 494 ~----~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~--~~~~~~~~h~~~i~~l~~spd--g~~l~sg 565 (704)
. .+.+..+.+|...|.+++|+|++.+|++|+.|++|++||..++ +++..+.+|.+.|.+++|+|+ +.+|++|
T Consensus 138 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~ 217 (330)
T 2hes_X 138 ESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSG 217 (330)
T ss_dssp TTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEE
T ss_pred CCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEE
Confidence 3 2456778899999999999999999999999999999999876 678889999999999999998 7799999
Q ss_pred eCCCeEEEEeCCCC--------eeeeeecC-CCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCC
Q 005277 566 DEDGTIMMWDLASG--------RCVTPLMG-HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGS 636 (704)
Q Consensus 566 ~~dg~I~iwdl~~~--------~~~~~~~~-h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 636 (704)
+.|++|++||+.++ .....+.+ |...|++++| ++++
T Consensus 218 s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~----------------------------------s~~~- 262 (330)
T 2hes_X 218 SDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAW----------------------------------GFNG- 262 (330)
T ss_dssp ETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEE----------------------------------CTTS-
T ss_pred eCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEE----------------------------------cCCC-
Confidence 99999999998764 34455554 8999999999 7554
Q ss_pred EEEEEeCCCcEEEEeCCCCccccccccccCccccccc-cccCCCCc-CeEEEEEcc--CCcEEEEeecCCC
Q 005277 637 LLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSL-KTLPTKST-PVYSLQFSR--RNLLFAAGALSKT 703 (704)
Q Consensus 637 ~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~-~V~~l~fs~--~g~~La~gs~dgt 703 (704)
+|++|+.||+|+||+..++.. ..+ .....|.. .|.+++|+| ++.+||+|+.||+
T Consensus 263 ~l~s~~~dg~v~iw~~~~~~~-------------~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~ 320 (330)
T 2hes_X 263 LIASVGADGVLAVYEEVDGEW-------------KVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGI 320 (330)
T ss_dssp CEEEEETTSCEEEEEEETTEE-------------EEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSE
T ss_pred EEEEEeCCCEEEEEEcCCCce-------------EEEeccccccccceEEEEEEecCCCceEEEEecCCCc
Confidence 899999999999999875421 111 12345665 899999999 7899999999985
No 16
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.3e-40 Score=354.29 Aligned_cols=281 Identities=20% Similarity=0.259 Sum_probs=235.4
Q ss_pred eeCCCCEEEEEEcCCCCEEEEEeC------CCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCc
Q 005277 348 INTHNGLNCASISQDGSLVAGGFS------DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS 421 (704)
Q Consensus 348 ~~~~~~V~~~~fs~dg~~lasg~~------dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 421 (704)
..|...|+|++|||||++||+|+. ||.|++|+....... ........+|.
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~------------------------~~~~~~~~~~~ 94 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPN------------------------ESLCTAGVQTE 94 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---C------------------------GGGCSEEEECS
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcc------------------------eeEecccCCCC
Confidence 358889999999999999999998 677888886542111 12233445688
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE----EeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 005277 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV----CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP 497 (704)
Q Consensus 422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~----~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~ 497 (704)
..|++++|+|++. +++++.||+|+|||+.+++... ...+|..+|++++|+|++++|++|+.||+|++||+++++.
T Consensus 95 ~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~ 173 (357)
T 4g56_B 95 AGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAV 173 (357)
T ss_dssp SCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEE
T ss_pred CCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 9999999999976 5667889999999998876543 3447999999999999999999999999999999999999
Q ss_pred eEEeccCCCCeeEEEEcCCCC-EEEEEECCCcEEEEeCCCCcEEEEee--cCCCCEEEEEEecC-CCEEEEEeCCCeEEE
Q 005277 498 LRIMAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSGECVRIFI--GHRSMILSLAMSPD-GRYMASGDEDGTIMM 573 (704)
Q Consensus 498 ~~~~~~~~~~V~~v~~~p~~~-~l~tgs~dg~I~iwd~~~~~~~~~~~--~h~~~i~~l~~spd-g~~l~sg~~dg~I~i 573 (704)
+..+.+|...|.+++|+|++. ++++++.||+|++||+++++++..+. .|...+++++|+|+ +.+|++|+.|+.|++
T Consensus 174 ~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~ 253 (357)
T 4g56_B 174 LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSL 253 (357)
T ss_dssp EEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEE
T ss_pred EEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeE
Confidence 999999999999999999874 78999999999999999988776543 56778999999997 568999999999999
Q ss_pred EeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCC-CEEEEEeCCCcEEEEeC
Q 005277 574 WDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEG-SLLASGSADCTVKLWDV 652 (704)
Q Consensus 574 wdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g-~~lasgs~Dg~V~iWd~ 652 (704)
||+++++.+..+.+|...|++++| +|++ ++|++|+.||+|+|||+
T Consensus 254 wd~~~~~~~~~~~~~~~~v~~l~~----------------------------------sp~~~~~lasgs~D~~i~iwd~ 299 (357)
T 4g56_B 254 VNIKNPDSAQTSAVHSQNITGLAY----------------------------------SYHSSPFLASISEDCTVAVLDA 299 (357)
T ss_dssp EESSCGGGCEEECCCSSCEEEEEE----------------------------------CSSSSCCEEEEETTSCEEEECT
T ss_pred EECCCCcEeEEEeccceeEEEEEE----------------------------------cCCCCCEEEEEeCCCEEEEEEC
Confidence 999999999999999999999999 8887 68999999999999999
Q ss_pred CCCccccccccccCccccccccccCCCCcCeEEEEEcc-CCcEEEEeecCCC
Q 005277 653 TTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSR-RNLLFAAGALSKT 703 (704)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~-~g~~La~gs~dgt 703 (704)
.+++.. ....|..+|++|+|+| ++.+||+|+.||+
T Consensus 300 ~~~~~~----------------~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~ 335 (357)
T 4g56_B 300 DFSEVF----------------RDLSHRDFVTGVAWSPLDHSKFTTVGWDHK 335 (357)
T ss_dssp TSCEEE----------------EECCCSSCEEEEEECSSSTTEEEEEETTSC
T ss_pred CCCcEe----------------EECCCCCCEEEEEEeCCCCCEEEEEcCCCe
Confidence 876432 2236889999999998 7999999999986
No 17
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3e-39 Score=350.34 Aligned_cols=298 Identities=26% Similarity=0.437 Sum_probs=246.4
Q ss_pred EEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCe
Q 005277 345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (704)
Q Consensus 345 ~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 424 (704)
....+|.+.|+|++|||||++||+|+ ++.++||++................ .............+...|
T Consensus 58 ~~~~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~----------~~~~~~~~~~~~~~~~~v 126 (393)
T 1erj_A 58 HKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAAN----------KDPENLNTSSSPSSDLYI 126 (393)
T ss_dssp EEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC---------------------------CCCCBE
T ss_pred EEecCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccc----------cccccccccccCCCceeE
Confidence 34457999999999999999999986 7899999987643322111100000 000000111112344569
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccC
Q 005277 425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH 504 (704)
Q Consensus 425 ~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~ 504 (704)
.+++|+|++++|++|+.|++|++||+.+++.+..+.+|...|++++|+|++.+|++|+.|++|++||+++++....+. +
T Consensus 127 ~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~ 205 (393)
T 1erj_A 127 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-I 205 (393)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-C
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-c
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988877776 5
Q ss_pred CCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCCcEEEEe-------ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 005277 505 LSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIF-------IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576 (704)
Q Consensus 505 ~~~V~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~~~~~~~-------~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl 576 (704)
...+.+++|+| ++++|++|+.||.|++||++++..+..+ .+|...|.+++|+|+|++|++|+.||.|++||+
T Consensus 206 ~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~ 285 (393)
T 1erj_A 206 EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL 285 (393)
T ss_dssp SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred CCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 67899999999 8999999999999999999999888776 579999999999999999999999999999999
Q ss_pred CCC------------eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCC
Q 005277 577 ASG------------RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSAD 644 (704)
Q Consensus 577 ~~~------------~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~D 644 (704)
++. .+...+.+|...|.++.| ++++.+|++|+.|
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~----------------------------------~~~~~~l~sgs~D 331 (393)
T 1erj_A 286 QNANNKSDSKTPNSGTCEVTYIGHKDFVLSVAT----------------------------------TQNDEYILSGSKD 331 (393)
T ss_dssp ---------------CEEEEEECCSSCEEEEEE----------------------------------CGGGCEEEEEETT
T ss_pred CCCCCcccccCCCCCcceEEEecccCcEEEEEE----------------------------------CCCCCEEEEEeCC
Confidence 763 345567789999999999 9999999999999
Q ss_pred CcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEcc------CCcEEEEeecCCC
Q 005277 645 CTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSR------RNLLFAAGALSKT 703 (704)
Q Consensus 645 g~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~------~g~~La~gs~dgt 703 (704)
|.|++||+.++.. +..+.+|...|.+++|++ ++.+||+|+.||+
T Consensus 332 ~~v~iwd~~~~~~---------------~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~ 381 (393)
T 1erj_A 332 RGVLFWDKKSGNP---------------LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCK 381 (393)
T ss_dssp SEEEEEETTTCCE---------------EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSE
T ss_pred CeEEEEECCCCeE---------------EEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCc
Confidence 9999999988653 456678999999999986 7899999999985
No 18
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=100.00 E-value=4e-42 Score=307.62 Aligned_cols=134 Identities=31% Similarity=0.694 Sum_probs=127.8
Q ss_pred ChhhHHHHHHHHHHHHhhccccchhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhHHhhhHHHHHHHhcCCChh
Q 005277 63 GPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPS 142 (704)
Q Consensus 63 ~~~~~~~~~~~l~~~~~~~ld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~~~~~~~~~~l~~~~~~~ 142 (704)
-|+.|+++|.+|++||++|||+||+||++|||||||||||+||++|+.++|++||++|+++|+.+ .++|++|++|++|+
T Consensus 4 ~~~~y~~~y~~L~~wv~~sld~yk~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e 82 (138)
T 2j4b_A 4 MKDQMETSYVSLKTWIEDSLDLFKNDLLPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQ 82 (138)
T ss_dssp ---CHHHHHHHHHHHHHHSCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHH
T ss_pred hHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred hhccCHHHHHhhcCceEEEEchhhHHHHHHHHhhcCcchHHHhhcceeEEEEccC
Q 005277 143 HLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQVSPG 197 (704)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~ 197 (704)
|+++|++++.||+|||+|+||++++++|++||+++++.+|++|||+||+|++++|
T Consensus 83 ~l~~n~~~~~fr~nKy~I~ls~~s~~lL~~fL~~~~~~~ll~Iin~~i~i~v~~g 137 (138)
T 2j4b_A 83 HIHENNFAYTFKNSKYHLSMGRYAFDLLINFLEERNLTYILKILNQHLDIKVYVG 137 (138)
T ss_dssp HHHHCHHHHHHHHSCEEEEEEHHHHHHHHHHHHHTTCHHHHHHHHHHEEEEEECC
T ss_pred HHhhCHHHHHHHhCCeEEEECHHHHHHHHHHHHHCCChHHHHHHHHheeeEeeCC
Confidence 9999999999999999999999999999999999999999999999999999876
No 19
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.1e-39 Score=340.32 Aligned_cols=263 Identities=18% Similarity=0.394 Sum_probs=244.8
Q ss_pred cCeEeecCCCCCCe-EEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCC
Q 005277 329 RNRVHLSSAALPSV-SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP 407 (704)
Q Consensus 329 ~~~~~l~~~~~p~~-~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (704)
...+++|....... ..+++.+|...|.+++|++++.++++|+.|+.|++||+..
T Consensus 57 D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~------------------------- 111 (321)
T 3ow8_A 57 DDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLEN------------------------- 111 (321)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-------------------------
T ss_pred CCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC-------------------------
Confidence 45678887654443 3456789999999999999999999999999999999875
Q ss_pred CCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeE
Q 005277 408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTA 487 (704)
Q Consensus 408 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i 487 (704)
......+.+|...+.+++|+|++++|++|+.||.|++|++.+++....+..|...|.+++|+|++++|++|+.||.|
T Consensus 112 ---~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i 188 (321)
T 3ow8_A 112 ---GKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGII 188 (321)
T ss_dssp ---TEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred ---CCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeE
Confidence 23445566788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeC
Q 005277 488 RIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE 567 (704)
Q Consensus 488 ~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~ 567 (704)
++||+++++.+..+.+|...|.+++|+|++++|++|+.|++|++||++++..+..+.+|...|.+++|+|+|++|++|+.
T Consensus 189 ~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~ 268 (321)
T 3ow8_A 189 NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSS 268 (321)
T ss_dssp EEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcE
Q 005277 568 DGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTV 647 (704)
Q Consensus 568 dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V 647 (704)
||.|++||+.+++++..+.+|...|++++| ++++.+|++++.||+|
T Consensus 269 D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~----------------------------------s~~g~~l~s~~~d~~i 314 (321)
T 3ow8_A 269 DKSVKVWDVGTRTCVHTFFDHQDQVWGVKY----------------------------------NGNGSKIVSVGDDQEI 314 (321)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEE----------------------------------CTTSSEEEEEETTCCE
T ss_pred CCcEEEEeCCCCEEEEEEcCCCCcEEEEEE----------------------------------CCCCCEEEEEeCCCeE
Confidence 999999999999999999999999999999 9999999999999999
Q ss_pred EEEeCC
Q 005277 648 KLWDVT 653 (704)
Q Consensus 648 ~iWd~~ 653 (704)
+|||+.
T Consensus 315 ~vwd~p 320 (321)
T 3ow8_A 315 HIYDCP 320 (321)
T ss_dssp EEEECC
T ss_pred EEEeCC
Confidence 999973
No 20
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.5e-39 Score=351.84 Aligned_cols=262 Identities=28% Similarity=0.526 Sum_probs=242.5
Q ss_pred cCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCC
Q 005277 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (704)
Q Consensus 329 ~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (704)
...+++|+...... ..++.+|.+.|++++|+|++++||+|+.||+|+|||+..
T Consensus 129 Dg~i~vwd~~~~~~-~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~-------------------------- 181 (410)
T 1vyh_C 129 DATIKVWDYETGDF-ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG-------------------------- 181 (410)
T ss_dssp SSCEEEEETTTCCC-CEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS--------------------------
T ss_pred CCeEEEEECCCCcE-EEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC--------------------------
Confidence 34677887654332 346788999999999999999999999999999999865
Q ss_pred CCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEE
Q 005277 409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR 488 (704)
Q Consensus 409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~ 488 (704)
......+.+|...|.+++|+|++++|++|+.|++|++||+.++.++..+.+|...|.++.|+|++.++++|+.|++|+
T Consensus 182 --~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~ 259 (410)
T 1vyh_C 182 --FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR 259 (410)
T ss_dssp --SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred --CceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEE
Confidence 234566789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCceeEEeccCCCCeeEEEEcCC--------------------CCEEEEEECCCcEEEEeCCCCcEEEEeecCCC
Q 005277 489 IWSMDRIQPLRIMAGHLSDVDCVRWHIN--------------------CNYIATGSSDKTVRLWDVSSGECVRIFIGHRS 548 (704)
Q Consensus 489 lwd~~~~~~~~~~~~~~~~V~~v~~~p~--------------------~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~ 548 (704)
+||+.++.....+.+|...|.+++|+|+ +.+|++|+.|++|++||++++.++..+.+|..
T Consensus 260 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~ 339 (410)
T 1vyh_C 260 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN 339 (410)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred EEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCC
Confidence 9999999999999999999999999996 67899999999999999999999999999999
Q ss_pred CEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEee
Q 005277 549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYF 628 (704)
Q Consensus 549 ~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (704)
.|++++|+|+|++|++|+.||.|++||+.+++++..+.+|...|+++.|
T Consensus 340 ~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~------------------------------- 388 (410)
T 1vyh_C 340 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDF------------------------------- 388 (410)
T ss_dssp CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEE-------------------------------
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEE-------------------------------
Confidence 9999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCEEEEEeCCCcEEEEeCC
Q 005277 629 GCASCEGSLLASGSADCTVKLWDVT 653 (704)
Q Consensus 629 ~~~s~~g~~lasgs~Dg~V~iWd~~ 653 (704)
+|++.+|++|+.||+|+||++.
T Consensus 389 ---~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 389 ---HKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp ---CSSSSCEEEEETTSEEEEEC--
T ss_pred ---cCCCCEEEEEeCCCcEEEEeCC
Confidence 9999999999999999999863
No 21
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.7e-38 Score=364.58 Aligned_cols=304 Identities=21% Similarity=0.303 Sum_probs=247.6
Q ss_pred cCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCC
Q 005277 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (704)
Q Consensus 329 ~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (704)
...+++|... +..+..++.+|...|++++|+|||++||+|+.||+|+|||+..........
T Consensus 169 D~~v~lwd~~-~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~------------------ 229 (611)
T 1nr0_A 169 DNTVAIFEGP-PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFE------------------ 229 (611)
T ss_dssp TSCEEEEETT-TBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECB------------------
T ss_pred CCeEEEEECC-CCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeec------------------
Confidence 3467777643 345566788999999999999999999999999999999986532111000
Q ss_pred CCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE-------------------------------
Q 005277 409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV------------------------------- 457 (704)
Q Consensus 409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~------------------------------- 457 (704)
.......+|.+.|++++|+|++++|++++.|++|++||+.+++.+.
T Consensus 230 ---~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i 306 (611)
T 1nr0_A 230 ---DDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFI 306 (611)
T ss_dssp ---CTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCE
T ss_pred ---cccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcE
Confidence 0000123799999999999999999999999999999998776543
Q ss_pred ------------EeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe-c----------------------
Q 005277 458 ------------CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM-A---------------------- 502 (704)
Q Consensus 458 ------------~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~-~---------------------- 502 (704)
.+.+|...|++++|+|+|++|++++.|++|++||+.++.....+ .
T Consensus 307 ~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~ 386 (611)
T 1nr0_A 307 NFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSW 386 (611)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEET
T ss_pred EEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEc
Confidence 33578999999999999999999999999999998765433221 0
Q ss_pred -----------------------------------------------------------cCCCCeeEEEEcCCCCEEEEE
Q 005277 503 -----------------------------------------------------------GHLSDVDCVRWHINCNYIATG 523 (704)
Q Consensus 503 -----------------------------------------------------------~~~~~V~~v~~~p~~~~l~tg 523 (704)
.|...+.+++|+|+|++|++|
T Consensus 387 d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasg 466 (611)
T 1nr0_A 387 DDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVG 466 (611)
T ss_dssp TTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEE
T ss_pred CCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEe
Confidence 123456789999999999999
Q ss_pred ECCCcEEEEeCCCCcE--EEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCC-Ceeeee--ecCCCceeeeeeee
Q 005277 524 SSDKTVRLWDVSSGEC--VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS-GRCVTP--LMGHTSCVWTLAYR 598 (704)
Q Consensus 524 s~dg~I~iwd~~~~~~--~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~-~~~~~~--~~~h~~~V~sl~~~ 598 (704)
+.|++|++||+.++.. +.. .+|...|++++|+|+|++|++++.|+.|++||+.+ ++.+.. +.+|...|++++|
T Consensus 467 s~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~f- 544 (611)
T 1nr0_A 467 GQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSW- 544 (611)
T ss_dssp ETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEE-
T ss_pred CCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEE-
Confidence 9999999999987653 333 68999999999999999999999999999999987 666554 3459999999999
Q ss_pred eeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCC
Q 005277 599 FLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT 678 (704)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~ 678 (704)
+|+|++|++|+.|++|+|||+.++... .+..+..
T Consensus 545 ---------------------------------spdg~~lasgs~D~~v~lW~~~~~~~~-------------~~~~~~~ 578 (611)
T 1nr0_A 545 ---------------------------------SPDNVRLATGSLDNSVIVWNMNKPSDH-------------PIIIKGA 578 (611)
T ss_dssp ---------------------------------CTTSSEEEEEETTSCEEEEETTCTTSC-------------CEEETTS
T ss_pred ---------------------------------CCCCCEEEEEECCCcEEEEECCCcccc-------------cchhhcc
Confidence 999999999999999999999875421 1134557
Q ss_pred C-CcCeEEEEEccCCcEEEEeecCCC
Q 005277 679 K-STPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 679 ~-~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
| ...|.+++|+|++. |++|+.|++
T Consensus 579 h~~~~v~~v~fs~d~~-l~s~~~D~~ 603 (611)
T 1nr0_A 579 HAMSSVNSVIWLNETT-IVSAGQDSN 603 (611)
T ss_dssp STTSCEEEEEEEETTE-EEEEETTSC
T ss_pred CcccCeeEEEEcCCCE-EEEecCCCC
Confidence 7 78999999999999 999999986
No 22
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=5.4e-38 Score=357.06 Aligned_cols=289 Identities=34% Similarity=0.555 Sum_probs=260.6
Q ss_pred CeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCC
Q 005277 330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG 409 (704)
Q Consensus 330 ~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (704)
..+++|... ......+.+|...|.+++|+|++++|++|+.||.|++|++..
T Consensus 284 ~~i~~w~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~--------------------------- 334 (577)
T 2ymu_A 284 KTVKLWNRN--GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG--------------------------- 334 (577)
T ss_dssp SCEEEEETT--SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS---------------------------
T ss_pred CEEEEEeCC--CcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC---------------------------
Confidence 456677643 334456778999999999999999999999999999999764
Q ss_pred CccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEE
Q 005277 410 RKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARI 489 (704)
Q Consensus 410 ~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~l 489 (704)
.....+.+|...|.+++|+|++++|++++.||+|++|+. +++.+..+.+|...|.+++|+|++++|++++.|+.|++
T Consensus 335 --~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~ 411 (577)
T 2ymu_A 335 --QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL 411 (577)
T ss_dssp --CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred --CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEE
Confidence 234556789999999999999999999999999999996 47788889999999999999999999999999999999
Q ss_pred EECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCC
Q 005277 490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG 569 (704)
Q Consensus 490 wd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg 569 (704)
||. +++.+..+.+|...|.+++|+|++++|++++.|++|++||. +++.+..+.+|...|++++|+|+|++|++++.|+
T Consensus 412 ~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~ 489 (577)
T 2ymu_A 412 WNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK 489 (577)
T ss_dssp ECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTS
T ss_pred EeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence 996 56788888999999999999999999999999999999996 6778888999999999999999999999999999
Q ss_pred eEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEE
Q 005277 570 TIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKL 649 (704)
Q Consensus 570 ~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~i 649 (704)
.|++||. +++.+..+.+|...|++++| +|+|++|++|+.||.|+|
T Consensus 490 ~i~iw~~-~~~~~~~~~~h~~~v~~l~~----------------------------------s~dg~~l~s~~~dg~v~l 534 (577)
T 2ymu_A 490 TVKLWNR-NGQLLQTLTGHSSSVRGVAF----------------------------------SPDGQTIASASDDKTVKL 534 (577)
T ss_dssp EEEEEET-TSCEEEEEECCSSCEEEEEE----------------------------------CTTSSCEEEEETTSEEEE
T ss_pred EEEEEcC-CCCEEEEEeCCCCCEEEEEE----------------------------------cCCCCEEEEEECcCEEEE
Confidence 9999994 78899999999999999999 999999999999999999
Q ss_pred EeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 650 WDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 650 Wd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
||... ..+..+.+|..+|.+++|+|||++|++|+.|++
T Consensus 535 wd~~~----------------~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~ 572 (577)
T 2ymu_A 535 WNRNG----------------QLLQTLTGHSSSVWGVAFSPDGQTIASASSDKT 572 (577)
T ss_dssp ECTTS----------------CEEEEEECCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred EeCCC----------------CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCE
Confidence 99632 235677889999999999999999999999986
No 23
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.8e-38 Score=335.16 Aligned_cols=250 Identities=21% Similarity=0.250 Sum_probs=217.7
Q ss_pred EeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEE
Q 005277 347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (704)
Q Consensus 347 ~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 426 (704)
...+..+|++++|+|++ .|++|+.||.|+|||+.+.... ......+.+|.+.|++
T Consensus 78 ~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~------------------------~~~~~~~~~H~~~V~~ 132 (344)
T 4gqb_B 78 GVQTEAGVADLTWVGER-GILVASDSGAVELWELDENETL------------------------IVSKFCKYEHDDIVST 132 (344)
T ss_dssp EEEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSC------------------------EEEEEEEECCSSCEEE
T ss_pred eeccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCce------------------------eEeeccccCCCCCEEE
Confidence 34567889999999985 6789999999999999763211 1122345689999999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCC-CEEEEEeCCCeEEEEECCCCceeEEec--c
Q 005277 427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRIQPLRIMA--G 503 (704)
Q Consensus 427 l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~-~~l~sgs~dg~i~lwd~~~~~~~~~~~--~ 503 (704)
++|+|++++|++|+.||+|++||+.+++.+..+.+|...|++++|+|++ .+|++|+.|++|++||++++++...+. .
T Consensus 133 v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~ 212 (344)
T 4gqb_B 133 VSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSA 212 (344)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC---
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecce
Confidence 9999999999999999999999999999999999999999999999987 578999999999999999999888764 4
Q ss_pred CCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCC-CEEEEEeCCCeEEEEeCCCCee
Q 005277 504 HLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG-RYMASGDEDGTIMMWDLASGRC 581 (704)
Q Consensus 504 ~~~~V~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg-~~l~sg~~dg~I~iwdl~~~~~ 581 (704)
+...+.+++|+|+ +++|++|+.||+|++||+++++++..+.+|...|++++|+|+| ++|++|+.||+|+|||+.++++
T Consensus 213 ~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~ 292 (344)
T 4gqb_B 213 PGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL 292 (344)
T ss_dssp -CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE
T ss_pred eeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE
Confidence 5567999999985 6789999999999999999999999999999999999999998 5799999999999999999876
Q ss_pred eeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCC-EEEEEeCCCcEEEEeCCCCc
Q 005277 582 VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGS-LLASGSADCTVKLWDVTTST 656 (704)
Q Consensus 582 ~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~lasgs~Dg~V~iWd~~~~~ 656 (704)
+ .+.+|.+.|++++| +|++. +|++||.||+|++|++.+..
T Consensus 293 ~-~~~~H~~~V~~v~~----------------------------------sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 293 F-RSQAHRDFVRDATW----------------------------------SPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp E-EECCCSSCEEEEEE----------------------------------CSSSTTEEEEEETTSCEEEEECCC--
T ss_pred E-EEcCCCCCEEEEEE----------------------------------eCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 5 57899999999999 99875 67899999999999998753
No 24
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.1e-37 Score=330.93 Aligned_cols=263 Identities=24% Similarity=0.380 Sum_probs=237.4
Q ss_pred cCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCC
Q 005277 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (704)
Q Consensus 329 ~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (704)
...+++|+..... +..++..|...|.+++|+|++++||+|+.|+.|++|++....
T Consensus 76 Dg~v~iWd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~------------------------ 130 (340)
T 1got_B 76 DGKLIIWDSYTTN-KVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE------------------------ 130 (340)
T ss_dssp TTEEEEEETTTCC-EEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCS------------------------
T ss_pred CCcEEEEECCCCC-cceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCC------------------------
Confidence 3577888765443 345667888999999999999999999999999999987521
Q ss_pred CCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEE
Q 005277 409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR 488 (704)
Q Consensus 409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~ 488 (704)
........+.+|.+.|.++.|++++. +++++.|++|++||+.+++.+..+.+|...|++++|+|++.++++|+.||+|+
T Consensus 131 ~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~ 209 (340)
T 1got_B 131 GNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 209 (340)
T ss_dssp BSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEE
Confidence 11234556789999999999998775 88999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeec--CCCCEEEEEEecCCCEEEEEe
Q 005277 489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG--HRSMILSLAMSPDGRYMASGD 566 (704)
Q Consensus 489 lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~--h~~~i~~l~~spdg~~l~sg~ 566 (704)
+||++++..+..+.+|...|.+++|+|++++|++|+.||+|++||+++++.+..+.. +...|++++|+|+|++|++|+
T Consensus 210 ~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~ 289 (340)
T 1got_B 210 LWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY 289 (340)
T ss_dssp EEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE
T ss_pred EEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEEC
Confidence 999999999999999999999999999999999999999999999999988877653 234799999999999999999
Q ss_pred CCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCc
Q 005277 567 EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCT 646 (704)
Q Consensus 567 ~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~ 646 (704)
.||.|++||+.+++.+..+.+|...|.++.| +|+|.+|++|+.||+
T Consensus 290 ~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~----------------------------------s~dg~~l~s~s~D~~ 335 (340)
T 1got_B 290 DDFNCNVWDALKADRAGVLAGHDNRVSCLGV----------------------------------TDDGMAVATGSWDSF 335 (340)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSCEEEEEE----------------------------------CTTSSCEEEEETTSC
T ss_pred CCCeEEEEEcccCcEeeEeecCCCcEEEEEE----------------------------------cCCCCEEEEEcCCcc
Confidence 9999999999999999999999999999999 999999999999999
Q ss_pred EEEEe
Q 005277 647 VKLWD 651 (704)
Q Consensus 647 V~iWd 651 (704)
|+|||
T Consensus 336 i~iWd 340 (340)
T 1got_B 336 LKIWN 340 (340)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99997
No 25
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-37 Score=328.07 Aligned_cols=285 Identities=19% Similarity=0.338 Sum_probs=257.8
Q ss_pred CCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccC
Q 005277 340 PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG 419 (704)
Q Consensus 340 p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (704)
.......+.+|.+.|+|++|+|++++|++|+.||.|+|||+.. ......+.+
T Consensus 21 ~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~----------------------------~~~~~~~~~ 72 (369)
T 3zwl_B 21 SHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLN----------------------------GERLGTLDG 72 (369)
T ss_dssp CSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTT----------------------------CCEEEEECC
T ss_pred cccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCC----------------------------chhhhhhhh
Confidence 3456677899999999999999999999999999999999875 235566788
Q ss_pred CccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCC-----CeEEEEECCC
Q 005277 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD-----RTARIWSMDR 494 (704)
Q Consensus 420 h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~d-----g~i~lwd~~~ 494 (704)
|.+.|.+++|+|++++|++++.||+|++||+.+++.+..+. |..+|.+++|+|++.++++++.+ |.|++||+..
T Consensus 73 h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~ 151 (369)
T 3zwl_B 73 HTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIER 151 (369)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEE
T ss_pred cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecC
Confidence 99999999999999999999999999999999999998888 88899999999999999999999 9999999976
Q ss_pred Cc-----------eeEEeccCCC--CeeEEEEcCCCCEEEEEECCCcEEEEeCCC-CcEEEEeecCCCCEEEEEEecCCC
Q 005277 495 IQ-----------PLRIMAGHLS--DVDCVRWHINCNYIATGSSDKTVRLWDVSS-GECVRIFIGHRSMILSLAMSPDGR 560 (704)
Q Consensus 495 ~~-----------~~~~~~~~~~--~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~-~~~~~~~~~h~~~i~~l~~spdg~ 560 (704)
.. .+..+..|.. .+.+++|+|++++|++|+.||.|++||+++ +..+..+..|...|.+++|+|+++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 231 (369)
T 3zwl_B 152 DSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLT 231 (369)
T ss_dssp CTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSS
T ss_pred CccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCC
Confidence 43 4455556666 899999999999999999999999999998 788899999999999999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEE
Q 005277 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLAS 640 (704)
Q Consensus 561 ~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~las 640 (704)
+|++++.||.|++||+++++.+..+. +...+.++.| +|++.++++
T Consensus 232 ~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~----------------------------------~~~~~~l~~ 276 (369)
T 3zwl_B 232 YFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVI----------------------------------TPLKEFIIL 276 (369)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEE----------------------------------CSSSSEEEE
T ss_pred EEEEecCCceEEEEECCCCceeeeec-CCCCceeEEe----------------------------------cCCCceEEE
Confidence 99999999999999999999888887 7788899999 999999999
Q ss_pred EeCCC--------------cEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 641 GSADC--------------TVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 641 gs~Dg--------------~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
++.++ .|++||+.++.. +..+..|..+|.+++|+|++.+|++|+.||+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~---------------~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 338 (369)
T 3zwl_B 277 GGGQEAKDVTTTSANEGKFEARFYHKIFEEE---------------IGRVQGHFGPLNTVAISPQGTSYASGGEDGF 338 (369)
T ss_dssp EECCC-------------CEEEEEETTTCCE---------------EEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred eecCCCceEEEEecCCCcceeEEEecCCCcc---------------hhheecccCcEEEEEECCCCCEEEEEcCCCe
Confidence 99998 899999887643 4566778999999999999999999999974
No 26
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=7.4e-37 Score=322.59 Aligned_cols=294 Identities=23% Similarity=0.375 Sum_probs=250.9
Q ss_pred EEEeeCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC
Q 005277 345 YTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (704)
Q Consensus 345 ~~~~~~~~~V~~~~fs~d-g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 423 (704)
.++.+|.+.|+|++|+|+ +++||+|+.||+|+|||+..... ........+.+|...
T Consensus 32 ~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~-----------------------~~~~~~~~l~~h~~~ 88 (340)
T 4aow_A 32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDET-----------------------NYGIPQRALRGHSHF 88 (340)
T ss_dssp EEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSS-----------------------CSEEEEEEECCCSSC
T ss_pred EEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc-----------------------ccceeeEEEeCCCCC
Confidence 468899999999999998 68999999999999999875221 112345678899999
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCcee-EEec
Q 005277 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL-RIMA 502 (704)
Q Consensus 424 V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~-~~~~ 502 (704)
|.+++|+|++++|++++.|+.|++|+............+...+..+.+++++.+|++|+.|+.+++||+...... ....
T Consensus 89 V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~ 168 (340)
T 4aow_A 89 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDE 168 (340)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSS
T ss_pred EEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEec
Confidence 999999999999999999999999999999998888889999999999999999999999999999999876543 3456
Q ss_pred cCCCCeeEEEEcCCC--CEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCe
Q 005277 503 GHLSDVDCVRWHINC--NYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR 580 (704)
Q Consensus 503 ~~~~~V~~v~~~p~~--~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~ 580 (704)
+|...+.+++|++++ .++++++.|+.|++||+++++.+..+.+|.+.|++++|+|+|++|++|+.||.|++||+++++
T Consensus 169 ~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~ 248 (340)
T 4aow_A 169 SHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK 248 (340)
T ss_dssp SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE
T ss_pred cccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCc
Confidence 789999999999764 678999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccc
Q 005277 581 CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLK 660 (704)
Q Consensus 581 ~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~ 660 (704)
.+..+..+ ..|.++.| +|++.+ ++++.|+.|++||+.+......
T Consensus 249 ~~~~~~~~-~~v~~~~~----------------------------------~~~~~~-~~~~~d~~i~iwd~~~~~~~~~ 292 (340)
T 4aow_A 249 HLYTLDGG-DIINALCF----------------------------------SPNRYW-LCAATGPSIKIWDLEGKIIVDE 292 (340)
T ss_dssp EEEEEECS-SCEEEEEE----------------------------------CSSSSE-EEEEETTEEEEEETTTTEEEEE
T ss_pred eeeeecCC-ceEEeeec----------------------------------CCCCce-eeccCCCEEEEEECCCCeEEEe
Confidence 98888755 57888888 887754 5566799999999988765433
Q ss_pred cccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 661 TEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 661 ~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
.... ........|...|++++|+|+|.+|++|+.||+
T Consensus 293 ~~~~------~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~ 329 (340)
T 4aow_A 293 LKQE------VISTSSKAEPPQCTSLAWSADGQTLFAGYTDNL 329 (340)
T ss_dssp ECCC-------------CCCCCEEEEEECTTSSEEEEEETTSC
T ss_pred cccc------ceeeeccCCCCCEEEEEECCCCCEEEEEeCCCE
Confidence 3221 122345578899999999999999999999985
No 27
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.5e-36 Score=319.25 Aligned_cols=284 Identities=20% Similarity=0.333 Sum_probs=250.6
Q ss_pred EEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC
Q 005277 344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (704)
Q Consensus 344 ~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 423 (704)
.....+|.+.|++++|+|++++|++|+ ||.|++|++....... ........+|...
T Consensus 44 ~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~-----------------------~~~~~~~~~~~~~ 99 (337)
T 1gxr_A 44 QINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS-----------------------PVSQLDCLNRDNY 99 (337)
T ss_dssp EEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS-----------------------CSEEEECSCTTSB
T ss_pred cceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee-----------------------eeecccccCCCCc
Confidence 344568999999999999999999998 9999999987522110 1111223378999
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe
Q 005277 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM 501 (704)
Q Consensus 424 V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~ 501 (704)
|.+++|+|++++|++++.||.|++||+.+++ ....+..|...|++++|+|+++++++++.||.|++||+++++.+..+
T Consensus 100 v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~ 179 (337)
T 1gxr_A 100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF 179 (337)
T ss_dssp EEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred EEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeee
Confidence 9999999999999999999999999999887 56778889999999999999999999999999999999999999999
Q ss_pred ccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCee
Q 005277 502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC 581 (704)
Q Consensus 502 ~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~ 581 (704)
..|...|.+++|+|++++|++++.||.|++||+++++.+..+ .+...+.+++|+|+|++|++++.||.|++||+.+++.
T Consensus 180 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~ 258 (337)
T 1gxr_A 180 QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK 258 (337)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE
T ss_pred ecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe
Confidence 999999999999999999999999999999999999988877 4778899999999999999999999999999998865
Q ss_pred eeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccccc
Q 005277 582 VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKT 661 (704)
Q Consensus 582 ~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~ 661 (704)
..+..|...|.++.| +|++++|++++.||.|++||+.++...
T Consensus 259 -~~~~~~~~~v~~~~~----------------------------------~~~~~~l~~~~~dg~i~~~~~~~~~~~--- 300 (337)
T 1gxr_A 259 -YQLHLHESCVLSLKF----------------------------------AYCGKWFVSTGKDNLLNAWRTPYGASI--- 300 (337)
T ss_dssp -EEECCCSSCEEEEEE----------------------------------CTTSSEEEEEETTSEEEEEETTTCCEE---
T ss_pred -EEEcCCccceeEEEE----------------------------------CCCCCEEEEecCCCcEEEEECCCCeEE---
Confidence 467789999999999 999999999999999999999887542
Q ss_pred ccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 662 EEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 662 ~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
....+..+|.++.|+|++.+|++|+.||+
T Consensus 301 -------------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 329 (337)
T 1gxr_A 301 -------------FQSKESSSVLSCDISVDDKYIVTGSGDKK 329 (337)
T ss_dssp -------------EEEECSSCEEEEEECTTSCEEEEEETTSC
T ss_pred -------------EEecCCCcEEEEEECCCCCEEEEecCCCe
Confidence 12246788999999999999999999985
No 28
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.1e-36 Score=354.97 Aligned_cols=300 Identities=26% Similarity=0.407 Sum_probs=248.4
Q ss_pred EEEeeCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC
Q 005277 345 YTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (704)
Q Consensus 345 ~~~~~~~~~V~~~~fs~d-g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 423 (704)
-.+.+|.+.|+|++|+|+ +++|++|+.||+|+||++..... ........+.+|...
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~-----------------------~~~~~~~~~~~h~~~ 432 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDK-----------------------AYGVAQRRLTGHSHF 432 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTT-----------------------CSCEEEEEEECCSSC
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCc-----------------------ccccccceecCCCCc
Confidence 357799999999999987 57999999999999999875211 012344667899999
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe--
Q 005277 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM-- 501 (704)
Q Consensus 424 V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~-- 501 (704)
|.+++|+|++++|++|+.||+|++||+.++..+..+.+|...|++++|+|++++|++|+.|++|++||+.........
T Consensus 433 v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~ 512 (694)
T 3dm0_A 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEG 512 (694)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSS
T ss_pred EEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998765443332
Q ss_pred -ccCCCCeeEEEEcCCC--CEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 005277 502 -AGHLSDVDCVRWHINC--NYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578 (704)
Q Consensus 502 -~~~~~~V~~v~~~p~~--~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~ 578 (704)
.+|...|.|++|+|++ ..|++|+.|++|++||++++++...+.+|.+.|++++|+|+|++|++|+.||.|++||+++
T Consensus 513 ~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~ 592 (694)
T 3dm0_A 513 GEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAE 592 (694)
T ss_dssp TTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTT
T ss_pred CCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence 3688899999999986 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccc
Q 005277 579 GRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKV 658 (704)
Q Consensus 579 ~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~ 658 (704)
++.+..+.. ...|.++.| +|++.++++++ |+.|+|||+.++..+
T Consensus 593 ~~~~~~~~~-~~~v~~~~~----------------------------------sp~~~~l~~~~-~~~i~iwd~~~~~~~ 636 (694)
T 3dm0_A 593 GKKLYSLEA-NSVIHALCF----------------------------------SPNRYWLCAAT-EHGIKIWDLESKSIV 636 (694)
T ss_dssp TEEEECCBC-SSCEEEEEE----------------------------------CSSSSEEEEEE-TTEEEEEETTTTEEE
T ss_pred CceEEEecC-CCcEEEEEE----------------------------------cCCCcEEEEEc-CCCEEEEECCCCCCh
Confidence 998887764 457888888 99998887776 566999999987765
Q ss_pred cccccccCccc--c--ccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 659 LKTEEKSGTNR--L--RSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 659 ~~~~~~~~~~~--~--~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
........... . ........+...+.+++|+|+|.+|++|+.||+
T Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~ 685 (694)
T 3dm0_A 637 EDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGV 685 (694)
T ss_dssp EEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSE
T ss_pred hhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCe
Confidence 43321100000 0 000011122234789999999999999999985
No 29
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.1e-38 Score=339.91 Aligned_cols=314 Identities=18% Similarity=0.304 Sum_probs=260.0
Q ss_pred eEeecCCCCCCe-EEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCC
Q 005277 331 RVHLSSAALPSV-SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG 409 (704)
Q Consensus 331 ~~~l~~~~~p~~-~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (704)
.+++|....... .......|...|++++|+|++++||+|+.||.|++|++.... .
T Consensus 46 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~------------------------~ 101 (416)
T 2pm9_A 46 SLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEAN------------------------N 101 (416)
T ss_dssp CCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTT------------------------S
T ss_pred eEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeeccccc------------------------c
Confidence 566665543321 111234688899999999999999999999999999987511 0
Q ss_pred CccceeeccCCccCeEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCc------eeE---EeecCCcCeeEEEEcCC-CCEE
Q 005277 410 RKRSYTLYQGHSGPVYSASFSPL-GDFILSSSADTTIRLWSTKLNA------NLV---CYKGHNYPVWDVQFNPQ-GHYF 478 (704)
Q Consensus 410 ~~~~~~~~~~h~~~V~~l~~sp~-~~~l~s~s~Dg~I~lwd~~~~~------~~~---~~~~h~~~V~~v~~sp~-~~~l 478 (704)
.......+.+|.+.|.+++|+|+ +.+|++++.||+|++||+.++. ... ....|...|.+++|+|+ +.+|
T Consensus 102 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 181 (416)
T 2pm9_A 102 AINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVF 181 (416)
T ss_dssp CCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEE
T ss_pred cccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEE
Confidence 12355677889999999999998 8899999999999999999876 333 24679999999999998 7899
Q ss_pred EEEeCCCeEEEEECCCCceeEEeccC------CCCeeEEEEcCCC-CEEEEEECCC---cEEEEeCCCC-cEEEEee-cC
Q 005277 479 ASSSHDRTARIWSMDRIQPLRIMAGH------LSDVDCVRWHINC-NYIATGSSDK---TVRLWDVSSG-ECVRIFI-GH 546 (704)
Q Consensus 479 ~sgs~dg~i~lwd~~~~~~~~~~~~~------~~~V~~v~~~p~~-~~l~tgs~dg---~I~iwd~~~~-~~~~~~~-~h 546 (704)
++++.||.|++||+++++.+..+..+ ...|.+++|+|++ .++++++.|+ .|++||++++ .++..+. +|
T Consensus 182 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~ 261 (416)
T 2pm9_A 182 ASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGH 261 (416)
T ss_dssp EEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCC
T ss_pred EEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCc
Confidence 99999999999999999998888876 7899999999997 6999999998 9999999986 6777787 89
Q ss_pred CCCEEEEEEec-CCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeE
Q 005277 547 RSMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTI 625 (704)
Q Consensus 547 ~~~i~~l~~sp-dg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (704)
...|.+++|+| ++++|++++.||.|++||+.+++.+..+.+|...|.++.|
T Consensus 262 ~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~---------------------------- 313 (416)
T 2pm9_A 262 QKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKF---------------------------- 313 (416)
T ss_dssp SSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEE----------------------------
T ss_pred cCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEE----------------------------
Confidence 99999999999 9999999999999999999999999999999999999999
Q ss_pred EeecccCCCC-CEEEEEeCCCcEEEEeCCCCcccccccc--------------------c-cCccccccccccCCCCcCe
Q 005277 626 IYFGCASCEG-SLLASGSADCTVKLWDVTTSTKVLKTEE--------------------K-SGTNRLRSLKTLPTKSTPV 683 (704)
Q Consensus 626 ~~~~~~s~~g-~~lasgs~Dg~V~iWd~~~~~~~~~~~~--------------------~-~~~~~~~~l~~~~~~~~~V 683 (704)
+|++ .+|++++.||.|++|++.+......... . ....... +.....+..+|
T Consensus 314 ------s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 386 (416)
T 2pm9_A 314 ------APEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFH-LQAPTWYGEPS 386 (416)
T ss_dssp ------CTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSC-CCCCSTTCCCS
T ss_pred ------CCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccccccccccccccc-ccCCccccCCc
Confidence 9998 8999999999999999988764332211 0 0000001 12223367889
Q ss_pred EEEEEccCCcEEEEeecCCC
Q 005277 684 YSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 684 ~~l~fs~~g~~La~gs~dgt 703 (704)
.+++|+|+|++||+|+.||+
T Consensus 387 ~~~~~s~dg~~la~~~~d~~ 406 (416)
T 2pm9_A 387 PAAHWAFGGKLVQITPDGKG 406 (416)
T ss_dssp CCCEEETTTEEECBCTTSSC
T ss_pred cceEEeeCCeEEEEeCCCCe
Confidence 99999999999999999885
No 30
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.8e-37 Score=333.72 Aligned_cols=301 Identities=17% Similarity=0.213 Sum_probs=252.4
Q ss_pred EEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC
Q 005277 344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (704)
Q Consensus 344 ~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 423 (704)
..++.+|.+.|+|++|+| ++|++|+.||.|+||++...... ........+.+|..+
T Consensus 9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~----------------------~~~~~~~~~~~h~~~ 64 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNE----------------------NPKDKSYSHFVHKSG 64 (397)
T ss_dssp EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTC----------------------CGGGGEEEEECCTTC
T ss_pred hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccc----------------------cCCCcceEEecCCCc
Confidence 345678999999999999 89999999999999998763210 012345667799999
Q ss_pred eEEEEEcCC----C---CEEEEEeCCCeEEEEeCCCCce-----eEEeecC-----CcCeeEEEEc----CCCCE-EEEE
Q 005277 424 VYSASFSPL----G---DFILSSSADTTIRLWSTKLNAN-----LVCYKGH-----NYPVWDVQFN----PQGHY-FASS 481 (704)
Q Consensus 424 V~~l~~sp~----~---~~l~s~s~Dg~I~lwd~~~~~~-----~~~~~~h-----~~~V~~v~~s----p~~~~-l~sg 481 (704)
|.+++|+|+ + ++|++++.||.|++|++.++.. ...+..| ...|++++|+ |++.+ |++|
T Consensus 65 v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~ 144 (397)
T 1sq9_A 65 LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVAT 144 (397)
T ss_dssp EEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEE
T ss_pred EEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEE
Confidence 999999999 9 9999999999999999998887 8888888 5899999999 99999 9999
Q ss_pred eCCCeEEEEECCC------CceeE-----Ee-------ccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEe
Q 005277 482 SHDRTARIWSMDR------IQPLR-----IM-------AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF 543 (704)
Q Consensus 482 s~dg~i~lwd~~~------~~~~~-----~~-------~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~ 543 (704)
+.||.|++||+++ .+.+. .+ ..|...|.+++|+|++ +|++|+.||.|++||+++++.+..+
T Consensus 145 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~ 223 (397)
T 1sq9_A 145 DVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNF 223 (397)
T ss_dssp ETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEE
T ss_pred eCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEE
Confidence 9999999999988 66655 66 4488999999999999 9999999999999999999999999
Q ss_pred ec---C---CCCEEEEEEecCCCEEEEEeCC---CeEEEEeCCCCeeeeeecC-------------CCceeeeeeeeeee
Q 005277 544 IG---H---RSMILSLAMSPDGRYMASGDED---GTIMMWDLASGRCVTPLMG-------------HTSCVWTLAYRFLL 601 (704)
Q Consensus 544 ~~---h---~~~i~~l~~spdg~~l~sg~~d---g~I~iwdl~~~~~~~~~~~-------------h~~~V~sl~~~~~~ 601 (704)
.. | ...|.+++|+|++++|++++.| |.|++||+++++.+..+.+ |...|.++.|
T Consensus 224 ~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---- 299 (397)
T 1sq9_A 224 ESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSF---- 299 (397)
T ss_dssp ECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEE----
T ss_pred eccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEE----
Confidence 98 9 9999999999999999999999 9999999999999999988 9999999999
Q ss_pred hccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccccccccc---C---ccccccccc
Q 005277 602 LVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKS---G---TNRLRSLKT 675 (704)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~---~---~~~~~~l~~ 675 (704)
+|++++|++|+.||.|++||+.++..+....... . .........
T Consensus 300 ------------------------------~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 349 (397)
T 1sq9_A 300 ------------------------------NDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHG 349 (397)
T ss_dssp ------------------------------CSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTS
T ss_pred ------------------------------CCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhcccccc
Confidence 9999999999999999999999876543332100 0 000000001
Q ss_pred cCCCCcCeEEEEEccCC----------cEEEEeecCCC
Q 005277 676 LPTKSTPVYSLQFSRRN----------LLFAAGALSKT 703 (704)
Q Consensus 676 ~~~~~~~V~~l~fs~~g----------~~La~gs~dgt 703 (704)
...|..+|.+++|+|++ .+|++|+.||+
T Consensus 350 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~ 387 (397)
T 1sq9_A 350 DSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRS 387 (397)
T ss_dssp CBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTE
T ss_pred ccccCCceeEEEeccccccccccccccceEEEecCCCc
Confidence 12238999999999998 79999999874
No 31
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=8.6e-37 Score=317.77 Aligned_cols=249 Identities=23% Similarity=0.391 Sum_probs=217.5
Q ss_pred EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (704)
Q Consensus 346 ~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (704)
.+.+|.+.|++++|+|+|++||+|+.||.|+||++... .......+.+|.++|.
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~--------------------------~~~~~~~l~gH~~~V~ 57 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGE--------------------------THKLIDTLTGHEGPVW 57 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSS--------------------------CBCCCEEECCCSSCEE
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCC--------------------------CcEEEEEEccccCCeE
Confidence 46689999999999999999999999999999998641 1234567889999999
Q ss_pred EEEEcCC--CCEEEEEeCCCeEEEEeCCCCc--eeEEeecCCcCeeEEEEcCC--CCEEEEEeCCCeEEEEECCCCc--e
Q 005277 426 SASFSPL--GDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQ--GHYFASSSHDRTARIWSMDRIQ--P 497 (704)
Q Consensus 426 ~l~~sp~--~~~l~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~v~~sp~--~~~l~sgs~dg~i~lwd~~~~~--~ 497 (704)
+++|+|+ +++|++|+.||+|++||+.++. .+..+.+|...|.+++|+|+ +.+|++|+.|++|++||++... .
T Consensus 58 ~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~ 137 (297)
T 2pm7_B 58 RVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS 137 (297)
T ss_dssp EEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC
T ss_pred EEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee
Confidence 9999864 8899999999999999998774 56677889999999999997 8999999999999999998753 2
Q ss_pred eEEeccCCCCeeEEEEcCC-------------CCEEEEEECCCcEEEEeCCCCc----EEEEeecCCCCEEEEEEecCC-
Q 005277 498 LRIMAGHLSDVDCVRWHIN-------------CNYIATGSSDKTVRLWDVSSGE----CVRIFIGHRSMILSLAMSPDG- 559 (704)
Q Consensus 498 ~~~~~~~~~~V~~v~~~p~-------------~~~l~tgs~dg~I~iwd~~~~~----~~~~~~~h~~~i~~l~~spdg- 559 (704)
...+.+|...|.+++|+|+ +++|++|+.|++|++||++++. ....+.+|...|.+++|+|++
T Consensus 138 ~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~ 217 (297)
T 2pm7_B 138 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL 217 (297)
T ss_dssp CEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS
T ss_pred eeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCC
Confidence 4667789999999999997 5799999999999999998876 667788999999999999985
Q ss_pred --CEEEEEeCCCeEEEEeCCCCe---eeeee--cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccC
Q 005277 560 --RYMASGDEDGTIMMWDLASGR---CVTPL--MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCAS 632 (704)
Q Consensus 560 --~~l~sg~~dg~I~iwdl~~~~---~~~~~--~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 632 (704)
.+|++|+.|+.|+|||+.++. ....+ ..|...|++++| +
T Consensus 218 ~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~----------------------------------s 263 (297)
T 2pm7_B 218 LRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASW----------------------------------S 263 (297)
T ss_dssp SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEE----------------------------------C
T ss_pred CceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEE----------------------------------C
Confidence 899999999999999998743 11223 568889999999 9
Q ss_pred CCCCEEEEEeCCCcEEEEeCCC
Q 005277 633 CEGSLLASGSADCTVKLWDVTT 654 (704)
Q Consensus 633 ~~g~~lasgs~Dg~V~iWd~~~ 654 (704)
|+|++|++|+.||+|+||+...
T Consensus 264 ~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 264 LSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp SSSCCEEEEETTSCEEEEEECT
T ss_pred CCCCEEEEEcCCCcEEEEEECC
Confidence 9999999999999999999764
No 32
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=6.5e-37 Score=319.77 Aligned_cols=244 Identities=22% Similarity=0.352 Sum_probs=222.4
Q ss_pred ceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 005277 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM 492 (704)
Q Consensus 413 ~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~ 492 (704)
....+.+|.+.|++++|+|++++|++|+.||+|++||+.++..+..+..|..+|.+++|+|+++++++|+.|++|++||+
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~ 84 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 44667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC-cEEEEeecCCCCEEEEEEec-CCCEEEEEeCCCe
Q 005277 493 DRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSP-DGRYMASGDEDGT 570 (704)
Q Consensus 493 ~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~-~~~~~~~~h~~~i~~l~~sp-dg~~l~sg~~dg~ 570 (704)
.+++.+..+.+|...|.+++|+|++++|++|+.||+|++||++++ .....+.+|...|.+++|+| ++.+|++|+.||.
T Consensus 85 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~ 164 (304)
T 2ynn_A 85 NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT 164 (304)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSE
T ss_pred CCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCe
Confidence 999999999999999999999999999999999999999999987 55677889999999999999 6889999999999
Q ss_pred EEEEeCCCCeeeeeec-CCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEE
Q 005277 571 IMMWDLASGRCVTPLM-GHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKL 649 (704)
Q Consensus 571 I~iwdl~~~~~~~~~~-~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~i 649 (704)
|++||++++.....+. +|...+..+.|.+ .+++.+|++|+.||+|++
T Consensus 165 v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~--------------------------------~~~~~~l~s~s~D~~i~i 212 (304)
T 2ynn_A 165 VKVWSLGQSTPNFTLTTGQERGVNYVDYYP--------------------------------LPDKPYMITASDDLTIKI 212 (304)
T ss_dssp EEEEETTCSSCSEEEECCCTTCEEEEEECC--------------------------------STTCCEEEEEETTSEEEE
T ss_pred EEEEECCCCCccceeccCCcCcEEEEEEEE--------------------------------cCCCCEEEEEcCCCeEEE
Confidence 9999998887665554 5667888888721 457889999999999999
Q ss_pred EeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 650 WDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 650 Wd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
||+.++. ++..+.+|...|.+++|+|++.+|++|+.||+
T Consensus 213 Wd~~~~~---------------~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~ 251 (304)
T 2ynn_A 213 WDYQTKS---------------CVATLEGHMSNVSFAVFHPTLPIIISGSEDGT 251 (304)
T ss_dssp EETTTTE---------------EEEEEECCSSCEEEEEECSSSSEEEEEETTSC
T ss_pred EeCCCCc---------------cceeeCCCCCCEEEEEECCCCCEEEEEcCCCe
Confidence 9998764 35667789999999999999999999999986
No 33
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.6e-36 Score=322.41 Aligned_cols=266 Identities=27% Similarity=0.363 Sum_probs=237.4
Q ss_pred cCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCC
Q 005277 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (704)
Q Consensus 329 ~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (704)
...+++|+.... .....+..|...|.+++|+|+|.+||+|+.|+.|++|++......
T Consensus 85 Dg~v~vWd~~~~-~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~---------------------- 141 (354)
T 2pbi_B 85 DGKVIVWDSFTT-NKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNE---------------------- 141 (354)
T ss_dssp TSEEEEEETTTC-CEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTC----------------------
T ss_pred CCeEEEEECCCC-CcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccc----------------------
Confidence 357888875443 334556778889999999999999999999999999998642110
Q ss_pred CCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcC--CCCEEEEEeCCCe
Q 005277 409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRT 486 (704)
Q Consensus 409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp--~~~~l~sgs~dg~ 486 (704)
........+.+|.+.|.+++|+|++..|++++.|++|++||+.+++.+..+.+|...|.+++|+| ++.+|++|+.||+
T Consensus 142 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~ 221 (354)
T 2pbi_B 142 NMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKK 221 (354)
T ss_dssp CSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSC
T ss_pred cccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCe
Confidence 01123455668999999999999999999999999999999999999999999999999999988 5789999999999
Q ss_pred EEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecC--CCCEEEEEEecCCCEEEE
Q 005277 487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH--RSMILSLAMSPDGRYMAS 564 (704)
Q Consensus 487 i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h--~~~i~~l~~spdg~~l~s 564 (704)
|++||+++++++..+.+|...|.+++|+|++++|++|+.|++|++||+++++.+..+..+ ...+.+++|+|+|++|++
T Consensus 222 v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~ 301 (354)
T 2pbi_B 222 AMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFA 301 (354)
T ss_dssp EEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEE
T ss_pred EEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEE
Confidence 999999999999999999999999999999999999999999999999999888777644 347899999999999999
Q ss_pred EeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCC
Q 005277 565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSAD 644 (704)
Q Consensus 565 g~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~D 644 (704)
|+.||.|++||+.+++.+..+.+|...|++++| +|+|.+|++|+.|
T Consensus 302 g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~----------------------------------spdg~~l~sgs~D 347 (354)
T 2pbi_B 302 GYNDYTINVWDVLKGSRVSILFGHENRVSTLRV----------------------------------SPDGTAFCSGSWD 347 (354)
T ss_dssp EETTSCEEEEETTTCSEEEEECCCSSCEEEEEE----------------------------------CTTSSCEEEEETT
T ss_pred EECCCcEEEEECCCCceEEEEECCCCcEEEEEE----------------------------------CCCCCEEEEEcCC
Confidence 999999999999999999999999999999999 9999999999999
Q ss_pred CcEEEEe
Q 005277 645 CTVKLWD 651 (704)
Q Consensus 645 g~V~iWd 651 (704)
|+|+||+
T Consensus 348 ~~v~vW~ 354 (354)
T 2pbi_B 348 HTLRVWA 354 (354)
T ss_dssp SEEEEEC
T ss_pred CCEEecC
Confidence 9999996
No 34
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.6e-36 Score=342.06 Aligned_cols=289 Identities=34% Similarity=0.572 Sum_probs=259.7
Q ss_pred CeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCC
Q 005277 330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG 409 (704)
Q Consensus 330 ~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (704)
..+++|+... ....++.+|...|++++|+|++++|++|+.|+.|++|+...
T Consensus 243 ~~i~~w~~~~--~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~--------------------------- 293 (577)
T 2ymu_A 243 KTVKLWNRNG--QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG--------------------------- 293 (577)
T ss_dssp SCEEEECTTS--CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS---------------------------
T ss_pred CEEEEEeCCC--CEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC---------------------------
Confidence 4677777543 34556788999999999999999999999999999999653
Q ss_pred CccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEE
Q 005277 410 RKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARI 489 (704)
Q Consensus 410 ~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~l 489 (704)
.....+.+|.+.|.+++|+|++++|++++.||+|++||+. +..+..+.+|..+|++++|+|++.++++|+.||.+++
T Consensus 294 --~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~ 370 (577)
T 2ymu_A 294 --QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 370 (577)
T ss_dssp --CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred --cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence 3445678899999999999999999999999999999986 5567778899999999999999999999999999999
Q ss_pred EECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCC
Q 005277 490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG 569 (704)
Q Consensus 490 wd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg 569 (704)
||. +++.+..+.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+.+|...|++++|+|++++|++++.|+
T Consensus 371 ~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~ 448 (577)
T 2ymu_A 371 WNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDK 448 (577)
T ss_dssp EET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCC
Confidence 996 56778888999999999999999999999999999999995 6788888999999999999999999999999999
Q ss_pred eEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEE
Q 005277 570 TIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKL 649 (704)
Q Consensus 570 ~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~i 649 (704)
.|++||+ +++.+..+.+|...|.+++| +|++++|++++.|+.|++
T Consensus 449 ~v~~w~~-~~~~~~~~~~~~~~v~~~~~----------------------------------spd~~~las~~~d~~i~i 493 (577)
T 2ymu_A 449 TVKLWNR-NGQLLQTLTGHSSSVRGVAF----------------------------------SPDGQTIASASDDKTVKL 493 (577)
T ss_dssp EEEEEET-TSCEEEEEECCSSCEEEEEE----------------------------------CTTSCEEEEEETTSEEEE
T ss_pred EEEEEEC-CCCEEEEEcCCCCCEEEEEE----------------------------------cCCCCEEEEEeCCCEEEE
Confidence 9999996 67788899999999999999 999999999999999999
Q ss_pred EeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 650 WDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 650 Wd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
||... ..+..+..|..+|++++|+|+|.+||+|+.||+
T Consensus 494 w~~~~----------------~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~ 531 (577)
T 2ymu_A 494 WNRNG----------------QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 531 (577)
T ss_dssp EETTS----------------CEEEEEECCSSCEEEEEECTTSSCEEEEETTSE
T ss_pred EcCCC----------------CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCE
Confidence 99643 235567789999999999999999999999874
No 35
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-36 Score=330.12 Aligned_cols=289 Identities=16% Similarity=0.293 Sum_probs=252.6
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEE
Q 005277 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (704)
Q Consensus 350 ~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 429 (704)
|.+.|+|++|+|++++|++|+.||.|++|+... .....+.+|..+|.+++|
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~-----------------------------~~~~~~~~~~~~v~~~~~ 157 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNKTG-----------------------------ALLNVLNFHRAPIVSVKW 157 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEETTS-----------------------------CEEEEECCCCSCEEEEEE
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCC-----------------------------CeeeeccCCCccEEEEEE
Confidence 567999999999999999999999999999432 345567789999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcC---------------eeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 005277 430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYP---------------VWDVQFNPQGHYFASSSHDRTARIWSMDR 494 (704)
Q Consensus 430 sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~---------------V~~v~~sp~~~~l~sgs~dg~i~lwd~~~ 494 (704)
+|++++|++++.||.|++||+.+++.+..+..+... +.++.|+|++ .+++++.+|.|++||+++
T Consensus 158 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~ 236 (425)
T 1r5m_A 158 NKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITE 236 (425)
T ss_dssp CTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTC
T ss_pred CCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCC
Confidence 999999999999999999999999999988888777 9999999875 588999999999999999
Q ss_pred CceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEE
Q 005277 495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMW 574 (704)
Q Consensus 495 ~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iw 574 (704)
++++..+..|...|.+++|+|++++|++++.||.|++||+++++.+..+.+|...|.+++|+|++ ++++++.||.|++|
T Consensus 237 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~ 315 (425)
T 1r5m_A 237 KTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLW 315 (425)
T ss_dssp SSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEE
T ss_pred CceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred eCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCC
Q 005277 575 DLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTT 654 (704)
Q Consensus 575 dl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~ 654 (704)
|+.+++.+..+..|...|.++.| +|++++|++|+.||.|++||+.+
T Consensus 316 d~~~~~~~~~~~~~~~~i~~~~~----------------------------------s~~~~~l~~~~~dg~i~i~~~~~ 361 (425)
T 1r5m_A 316 SLKQNTLLALSIVDGVPIFAGRI----------------------------------SQDGQKYAVAFMDGQVNVYDLKK 361 (425)
T ss_dssp ETTTTEEEEEEECTTCCEEEEEE----------------------------------CTTSSEEEEEETTSCEEEEECHH
T ss_pred ECCCCcEeEecccCCccEEEEEE----------------------------------cCCCCEEEEEECCCeEEEEECCC
Confidence 99999999999999999999999 99999999999999999999987
Q ss_pred Cccccccccc-----cCccccccccccCCCCc--CeEEEEEccCCcEEEEeecCCC
Q 005277 655 STKVLKTEEK-----SGTNRLRSLKTLPTKST--PVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 655 ~~~~~~~~~~-----~~~~~~~~l~~~~~~~~--~V~~l~fs~~g~~La~gs~dgt 703 (704)
+......... ........+..+..+.. +|.+++|+|++.+|++|+.||+
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 417 (425)
T 1r5m_A 362 LNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQE 417 (425)
T ss_dssp HHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSC
T ss_pred CccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCce
Confidence 5421111000 00011125667777866 9999999999999999999985
No 36
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=6e-37 Score=325.34 Aligned_cols=303 Identities=13% Similarity=0.214 Sum_probs=251.7
Q ss_pred CCCeEEEEEeeCCCCEEEEEEcCCCC-EEEEEeC---CCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccce
Q 005277 339 LPSVSFYTFINTHNGLNCASISQDGS-LVAGGFS---DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSY 414 (704)
Q Consensus 339 ~p~~~~~~~~~~~~~V~~~~fs~dg~-~lasg~~---dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (704)
.|......+.+|...|++++|+|++. ++++|+. ||.|+||++.+.. ...
T Consensus 6 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~---------------------------~~~ 58 (357)
T 3i2n_A 6 KPQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGD---------------------------LKL 58 (357)
T ss_dssp CCCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSS---------------------------EEE
T ss_pred hhHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCc---------------------------ccc
Confidence 45666677788999999999999985 5566766 9999999987521 111
Q ss_pred eeccCCccCeEEEEEcCC---CCEEEEEeCCCeEEEEeCCCCc-eeEEeecCCcCeeEEEE------cCCCCEEEEEeCC
Q 005277 415 TLYQGHSGPVYSASFSPL---GDFILSSSADTTIRLWSTKLNA-NLVCYKGHNYPVWDVQF------NPQGHYFASSSHD 484 (704)
Q Consensus 415 ~~~~~h~~~V~~l~~sp~---~~~l~s~s~Dg~I~lwd~~~~~-~~~~~~~h~~~V~~v~~------sp~~~~l~sgs~d 484 (704)
....+|..+|.+++|+|+ +.+|++|+.||.|++||+.+++ .+..+.+|...|.++.| +|++++|++|+.|
T Consensus 59 ~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d 138 (357)
T 3i2n_A 59 LREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRD 138 (357)
T ss_dssp EEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETT
T ss_pred eeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCC
Confidence 223378999999999999 6999999999999999999988 88899999999999955 6799999999999
Q ss_pred CeEEEEECCCCc-eeEEeccCCC----CeeEEE----EcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEE
Q 005277 485 RTARIWSMDRIQ-PLRIMAGHLS----DVDCVR----WHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAM 555 (704)
Q Consensus 485 g~i~lwd~~~~~-~~~~~~~~~~----~V~~v~----~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~ 555 (704)
|.|++||++++. ++..+..|.. .+.+++ |+|++++|++|+.||.|++||+++++.... ..|...|.+++|
T Consensus 139 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~ 217 (357)
T 3i2n_A 139 GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEF 217 (357)
T ss_dssp SCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEE
T ss_pred CeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEc
Confidence 999999999887 7788776555 788998 678999999999999999999999987554 578899999999
Q ss_pred ec---CCCEEEEEeCCCeEEEEeCCCCeeeeeec-----CCCceeeeeeeeeeehccccccccccccccceeeeeeeEEe
Q 005277 556 SP---DGRYMASGDEDGTIMMWDLASGRCVTPLM-----GHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIY 627 (704)
Q Consensus 556 sp---dg~~l~sg~~dg~I~iwdl~~~~~~~~~~-----~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (704)
+| ++.+|++|+.||.|++||+++++.+..+. +|...|+++.|
T Consensus 218 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~------------------------------ 267 (357)
T 3i2n_A 218 DRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRH------------------------------ 267 (357)
T ss_dssp SCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEE------------------------------
T ss_pred CCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEE------------------------------
Confidence 99 99999999999999999999887766555 89999999999
Q ss_pred ecccCCCCC-EEEEEeCCCcEEEEeCCCCccccccccc----cCccccccccccCCCCcCeEEEEEccCCcEEE-EeecC
Q 005277 628 FGCASCEGS-LLASGSADCTVKLWDVTTSTKVLKTEEK----SGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFA-AGALS 701 (704)
Q Consensus 628 ~~~~s~~g~-~lasgs~Dg~V~iWd~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La-~gs~d 701 (704)
+|++. +|++|+.||.|++||+..+......... ........+..+..|..+|.+++|+|++.+|+ +|+.|
T Consensus 268 ----~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d 343 (357)
T 3i2n_A 268 ----LPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFD 343 (357)
T ss_dssp ----ETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETT
T ss_pred ----CCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCC
Confidence 99988 8999999999999999876543222111 11112245677888999999999999999998 79888
Q ss_pred CC
Q 005277 702 KT 703 (704)
Q Consensus 702 gt 703 (704)
|+
T Consensus 344 ~~ 345 (357)
T 3i2n_A 344 QT 345 (357)
T ss_dssp SE
T ss_pred Cc
Confidence 74
No 37
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.7e-36 Score=324.09 Aligned_cols=295 Identities=18% Similarity=0.217 Sum_probs=247.5
Q ss_pred eeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEE
Q 005277 348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA 427 (704)
Q Consensus 348 ~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 427 (704)
..|.+.|+|++|+|++++||+|+.||.|++|++.... ......+.+|.+.|.++
T Consensus 5 ~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~--------------------------~~~~~~~~~h~~~v~~~ 58 (372)
T 1k8k_C 5 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK--------------------------WVQVHELKEHNGQVTGV 58 (372)
T ss_dssp ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE--------------------------EEEEEEEECCSSCEEEE
T ss_pred cccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc--------------------------EEeeeeecCCCCcccEE
Confidence 3488899999999999999999999999999987521 12456677899999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCceeEE--eecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCce----eEEe
Q 005277 428 SFSPLGDFILSSSADTTIRLWSTKLNANLVC--YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP----LRIM 501 (704)
Q Consensus 428 ~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~--~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~----~~~~ 501 (704)
+|+|++++|++++.||.|++||+.+++.... +..|...|.+++|+|++++|++|+.||.|++||++.... ....
T Consensus 59 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~ 138 (372)
T 1k8k_C 59 DWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIK 138 (372)
T ss_dssp EEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEEC
T ss_pred EEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeee
Confidence 9999999999999999999999988865444 467899999999999999999999999999999988763 2333
Q ss_pred ccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeC------------------CCCcEEEEeecCCCCEEEEEEecCCCEEE
Q 005277 502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDV------------------SSGECVRIFIGHRSMILSLAMSPDGRYMA 563 (704)
Q Consensus 502 ~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~------------------~~~~~~~~~~~h~~~i~~l~~spdg~~l~ 563 (704)
.+|...|.+++|+|++++|++|+.||.|++||+ ..++++..+.+|...|.+++|+|++++|+
T Consensus 139 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 218 (372)
T 1k8k_C 139 KPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA 218 (372)
T ss_dssp TTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEE
T ss_pred cccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEE
Confidence 678899999999999999999999999999995 46888999999999999999999999999
Q ss_pred EEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeC
Q 005277 564 SGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSA 643 (704)
Q Consensus 564 sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~ 643 (704)
+++.||.|++||+++++.+..+..|...|.++.| +|++.++++| .
T Consensus 219 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~----------------------------------~~~~~~l~~~-~ 263 (372)
T 1k8k_C 219 WVSHDSTVCLADADKKMAVATLASETLPLLAVTF----------------------------------ITESSLVAAG-H 263 (372)
T ss_dssp EEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEE----------------------------------EETTEEEEEE-T
T ss_pred EEeCCCEEEEEECCCCceeEEEccCCCCeEEEEE----------------------------------ecCCCEEEEE-e
Confidence 9999999999999999999999999999999999 8999888888 8
Q ss_pred CCcEEEEeCCC--Ccc--ccccccccC---------------ccccccc------ccc-CCCCcCeEEEEEc-cCC---c
Q 005277 644 DCTVKLWDVTT--STK--VLKTEEKSG---------------TNRLRSL------KTL-PTKSTPVYSLQFS-RRN---L 693 (704)
Q Consensus 644 Dg~V~iWd~~~--~~~--~~~~~~~~~---------------~~~~~~l------~~~-~~~~~~V~~l~fs-~~g---~ 693 (704)
||.|++|++.. +.- ......... ....... ..+ ..|..+|.+++|+ ++| .
T Consensus 264 d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~ 343 (372)
T 1k8k_C 264 DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCS 343 (372)
T ss_dssp TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCS
T ss_pred CCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCccee
Confidence 99999999987 320 000000000 0000011 233 4889999999976 666 9
Q ss_pred EEEEeecCCC
Q 005277 694 LFAAGALSKT 703 (704)
Q Consensus 694 ~La~gs~dgt 703 (704)
+|++|+.||+
T Consensus 344 ~l~s~~~Dg~ 353 (372)
T 1k8k_C 344 QFCTTGMDGG 353 (372)
T ss_dssp EEEEEETTSE
T ss_pred eEEEecCCCc
Confidence 9999999985
No 38
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.2e-36 Score=325.72 Aligned_cols=289 Identities=15% Similarity=0.178 Sum_probs=236.8
Q ss_pred EEEEeeCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCcc
Q 005277 344 FYTFINTHNGLNCASISQDG-SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG 422 (704)
Q Consensus 344 ~~~~~~~~~~V~~~~fs~dg-~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 422 (704)
..++.+|...|+|++|+|++ ++||+|+.||.|+||++.... ........+|.+
T Consensus 66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--------------------------~~~~~~~~~h~~ 119 (383)
T 3ei3_B 66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQN--------------------------KTSFIQGMGPGD 119 (383)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTT--------------------------CEEEECCCSTTC
T ss_pred EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcc--------------------------cceeeecCCcCC
Confidence 44678899999999999999 999999999999999987521 112223357999
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEeecC---CcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCcee
Q 005277 423 PVYSASFSP-LGDFILSSSADTTIRLWSTKLNANLVCYKGH---NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL 498 (704)
Q Consensus 423 ~V~~l~~sp-~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h---~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~ 498 (704)
.|.+++|+| ++.+|++++.|++|++||+.. ..+..+..| ...|.+++|+|++.+|++|+.||.|++||+ +++++
T Consensus 120 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~ 197 (383)
T 3ei3_B 120 AITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEI 197 (383)
T ss_dssp BEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEE
T ss_pred ceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEE
Confidence 999999999 678999999999999999995 555566544 488999999999999999999999999999 56788
Q ss_pred EEeccCCCCeeEEEEcCCCC-EEEEEECCCcEEEEeCCC----CcEEEEeecCCCCEEEEEEec-CCCEEEEEeCCCeEE
Q 005277 499 RIMAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSS----GECVRIFIGHRSMILSLAMSP-DGRYMASGDEDGTIM 572 (704)
Q Consensus 499 ~~~~~~~~~V~~v~~~p~~~-~l~tgs~dg~I~iwd~~~----~~~~~~~~~h~~~i~~l~~sp-dg~~l~sg~~dg~I~ 572 (704)
..+.+|...|.+++|+|+++ +|++|+.|+.|++||+++ +.++..+ +|...|.+++|+| +|++|++++.||.|+
T Consensus 198 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~ 276 (383)
T 3ei3_B 198 FKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIR 276 (383)
T ss_dssp EEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEE
T ss_pred EEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEE
Confidence 88999999999999999998 999999999999999997 6677766 7999999999999 999999999999999
Q ss_pred EEeCCCCeeeeeecCCCc-------eeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCC
Q 005277 573 MWDLASGRCVTPLMGHTS-------CVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADC 645 (704)
Q Consensus 573 iwdl~~~~~~~~~~~h~~-------~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg 645 (704)
+||+++++.+..+.+|.. .+. ..|.+ .......+++|++.+ +|+.||
T Consensus 277 iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p-----------------------~~~~~~~~~s~dg~~--s~s~d~ 330 (383)
T 3ei3_B 277 VYSSYDWSKPDQIIIHPHRQFQHLTPIK-ATWHP-----------------------MYDLIVAGRYPDDQL--LLNDKR 330 (383)
T ss_dssp EEETTBTTSCSEEEECCBCCCTTSCCCC-CEECS-----------------------SSSEEEEECBCCTTT--CTTCCC
T ss_pred EEECCCCccccccccccccccccccceE-EeccC-----------------------CCCceEEEecCCccc--ccCCCC
Confidence 999999888777765542 222 12200 001111233788877 888999
Q ss_pred cEEEEeCCCCccccccccccCccccccccccCC--CCcCeEEEEEccCCcEEEEeecCCC
Q 005277 646 TVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT--KSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 646 ~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
.|+|||+.++..+ ..+.. +...+..++|+|++.+|++|+ ||+
T Consensus 331 ~i~iwd~~~~~~~---------------~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~ 374 (383)
T 3ei3_B 331 TIDIYDANSGGLV---------------HQLRDPNAAGIISLNKFSPTGDVLASGM-GFN 374 (383)
T ss_dssp CEEEEETTTCCEE---------------EEECBTTBCSCCCEEEECTTSSEEEEEE-TTE
T ss_pred eEEEEecCCCcee---------------eeecCCCCCceEEEEEEecCccEEEEec-CCc
Confidence 9999999887643 33333 567788889999999999997 653
No 39
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.3e-36 Score=333.83 Aligned_cols=301 Identities=18% Similarity=0.291 Sum_probs=237.5
Q ss_pred eCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCc-------
Q 005277 349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS------- 421 (704)
Q Consensus 349 ~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------- 421 (704)
.+.+.|+|++|+|+|++||+|+.||.|+||++........ ...........+.+|.
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~-----------------~~~~~~~~~~~~~~h~~~~~~~~ 88 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQS-----------------HSRGEYNVYSTFQSHEPEFDYLK 88 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----C-----------------CCCCCEEEEEEEECCCCEEEGGG
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCc-----------------ccccceeEecccccccccccccc
Confidence 4567899999999999999999999999999876321100 0011233466778898
Q ss_pred -----cCeEEEEEcCCC--CEEEEEeCCCeEEEEeCCCCcee--------------------------------------
Q 005277 422 -----GPVYSASFSPLG--DFILSSSADTTIRLWSTKLNANL-------------------------------------- 456 (704)
Q Consensus 422 -----~~V~~l~~sp~~--~~l~s~s~Dg~I~lwd~~~~~~~-------------------------------------- 456 (704)
++|++++|+|++ .+|++++.||+|++|++.++...
T Consensus 89 ~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (447)
T 3dw8_B 89 SLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASP 168 (447)
T ss_dssp TEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEE
T ss_pred cccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccc
Confidence 889999999998 79999999999999998764331
Q ss_pred -EE-eecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCC-CceeEE-------eccCCCCeeEEEEcCCC-CEEEEEEC
Q 005277 457 -VC-YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR-IQPLRI-------MAGHLSDVDCVRWHINC-NYIATGSS 525 (704)
Q Consensus 457 -~~-~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~-~~~~~~-------~~~~~~~V~~v~~~p~~-~~l~tgs~ 525 (704)
.. ..+|...|++++|+|++++|++| .|+.|++||+++ ...+.. +.+|...|.+++|+|++ ++|++|+.
T Consensus 169 ~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~ 247 (447)
T 3dw8_B 169 RRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS 247 (447)
T ss_dssp EEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET
T ss_pred eEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC
Confidence 12 36799999999999999999999 799999999984 334442 55899999999999998 99999999
Q ss_pred CCcEEEEeCCCCcE----EEEeecCCC------------CEEEEEEecCCCEEEEEeCCCeEEEEeCCC-CeeeeeecCC
Q 005277 526 DKTVRLWDVSSGEC----VRIFIGHRS------------MILSLAMSPDGRYMASGDEDGTIMMWDLAS-GRCVTPLMGH 588 (704)
Q Consensus 526 dg~I~iwd~~~~~~----~~~~~~h~~------------~i~~l~~spdg~~l~sg~~dg~I~iwdl~~-~~~~~~~~~h 588 (704)
||.|++||+++++. +..+.+|.. .|.+++|+|+|++|++++. |.|++||+++ ++++..+.+|
T Consensus 248 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~ 326 (447)
T 3dw8_B 248 KGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVH 326 (447)
T ss_dssp TSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESC
T ss_pred CCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecc
Confidence 99999999999887 788888876 8999999999999999999 9999999997 8888888888
Q ss_pred Cceee---------------eeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCC
Q 005277 589 TSCVW---------------TLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVT 653 (704)
Q Consensus 589 ~~~V~---------------sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~ 653 (704)
...+. .++| +|++.+|++|+.||.|++||+.
T Consensus 327 ~~~~~~l~~~~~~~~i~~~~~~~~----------------------------------s~~~~~l~s~s~dg~v~iwd~~ 372 (447)
T 3dw8_B 327 EYLRSKLCSLYENDCIFDKFECCW----------------------------------NGSDSVVMTGSYNNFFRMFDRN 372 (447)
T ss_dssp GGGTTTHHHHHHTSGGGCCCCEEE----------------------------------CTTSSEEEEECSTTEEEEEETT
T ss_pred ccccccccccccccccccceEEEE----------------------------------CCCCCEEEEeccCCEEEEEEcC
Confidence 64322 2556 9999999999999999999999
Q ss_pred CCccccccccccCcc-----------------ccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277 654 TSTKVLKTEEKSGTN-----------------RLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 702 (704)
Q Consensus 654 ~~~~~~~~~~~~~~~-----------------~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg 702 (704)
++............. ..............|..++|+|++.+||+|+.++
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~ 438 (447)
T 3dw8_B 373 TKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN 438 (447)
T ss_dssp TCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC
T ss_pred CCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce
Confidence 876542111100000 0000011123467899999999999999998875
No 40
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.2e-36 Score=323.88 Aligned_cols=287 Identities=16% Similarity=0.276 Sum_probs=243.2
Q ss_pred EeeCCCCEEEEEEcCC----CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCcc
Q 005277 347 FINTHNGLNCASISQD----GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG 422 (704)
Q Consensus 347 ~~~~~~~V~~~~fs~d----g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 422 (704)
..+|.+.|+|++|+|+ ...+++++.++.|+||++........ ........|..
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~-----------------------~~~~~~~~~~~ 70 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRL-----------------------LQSYVDADADE 70 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEE-----------------------EEEEECSCTTC
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEe-----------------------eeeccccCCCC
Confidence 3478999999999984 55667777788999999875221110 00011223778
Q ss_pred CeEEEEEcCC----CCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcC-CCCEEEEEeCCCeEEEEECCCCce
Q 005277 423 PVYSASFSPL----GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQP 497 (704)
Q Consensus 423 ~V~~l~~sp~----~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~lwd~~~~~~ 497 (704)
.|++++|+|+ +.+|++|+.||+|++||+.+++.+..+.+|..+|.+++|+| ++.+|++|+.||.|++||+++++.
T Consensus 71 ~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 150 (366)
T 3k26_A 71 NFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL 150 (366)
T ss_dssp CEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE
T ss_pred cEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE
Confidence 9999999999 66999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred eEEe---ccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEee----------------------------cC
Q 005277 498 LRIM---AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI----------------------------GH 546 (704)
Q Consensus 498 ~~~~---~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~----------------------------~h 546 (704)
+..+ .+|...|.+++|+|++++|++|+.||.|++||+++++.+..+. +|
T Consensus 151 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (366)
T 3k26_A 151 VAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIH 230 (366)
T ss_dssp EEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSC
T ss_pred EEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCC
Confidence 8888 6899999999999999999999999999999999876543333 39
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCee--------------eeeecCCCceeeeeeeeeeehcccccccccc
Q 005277 547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC--------------VTPLMGHTSCVWTLAYRFLLLVTNAYLKISD 612 (704)
Q Consensus 547 ~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~--------------~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~ 612 (704)
...|.+++|+ +++|++++.||.|++||+.++.. +..+.+|...|+++.|
T Consensus 231 ~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--------------- 293 (366)
T 3k26_A 231 RNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRF--------------- 293 (366)
T ss_dssp SSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCC---------------
T ss_pred cceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEE---------------
Confidence 9999999998 78999999999999999988744 6777888888999988
Q ss_pred ccccceeeeeeeEEeecccCCC--CCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCC--CcCeEEEEE
Q 005277 613 KVSTGFLFYSLTIIYFGCASCE--GSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTK--STPVYSLQF 688 (704)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~s~~--g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~V~~l~f 688 (704)
+|+ +++|++|+.||.|++||+.++.... ..+..+..| ..+|.+++|
T Consensus 294 -------------------s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-----------~~~~~~~~~~~~~~v~~~~~ 343 (366)
T 3k26_A 294 -------------------SMDFWQKMLALGNQVGKLYVWDLEVEDPHK-----------AKCTTLTHHKCGAAIRQTSF 343 (366)
T ss_dssp -------------------EECTTSSEEEEECTTSCEEEEECCSSSGGG-----------CEEEEECCTTCCSCEEEEEE
T ss_pred -------------------cCCCCCcEEEEEecCCcEEEEECCCCCCcc-----------ccceEEcccccCCceEEEEe
Confidence 777 9999999999999999998875421 123345555 789999999
Q ss_pred ccCCcEEEEeecCCC
Q 005277 689 SRRNLLFAAGALSKT 703 (704)
Q Consensus 689 s~~g~~La~gs~dgt 703 (704)
+|++.+|++|+.||+
T Consensus 344 s~~~~~l~s~~~dg~ 358 (366)
T 3k26_A 344 SRDSSILIAVCDDAS 358 (366)
T ss_dssp CTTSSEEEEEETTSE
T ss_pred CCCCCeEEEEeCCCE
Confidence 999999999999974
No 41
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.6e-36 Score=324.50 Aligned_cols=252 Identities=19% Similarity=0.245 Sum_probs=215.5
Q ss_pred EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (704)
Q Consensus 346 ~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (704)
...+|..+|++++|+|++.+| +|+.||.|+|||+.+..... .......+|.+.|+
T Consensus 89 ~~~~~~~~V~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~~------------------------~~~~~~~~h~~~V~ 143 (357)
T 4g56_B 89 AGVQTEAGVTDVAWVSEKGIL-VASDSGAVELWEILEKESLL------------------------VNKFAKYEHDDIVK 143 (357)
T ss_dssp EEEECSSCEEEEEEETTTEEE-EEETTSCEEEC--------C------------------------CCCEEECCCSSCEE
T ss_pred ccCCCCCCEEEEEEcCCCCEE-EEECCCEEEEeeccccceeE------------------------EEeeccCCCCCCEE
Confidence 456788999999999998755 56789999999987632111 11233458999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCC-EEEEEeCCCeEEEEECCCCceeEEec--
Q 005277 426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-YFASSSHDRTARIWSMDRIQPLRIMA-- 502 (704)
Q Consensus 426 ~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~-~l~sgs~dg~i~lwd~~~~~~~~~~~-- 502 (704)
+++|+|++++|++|+.||+|++||+.+++.+..+.+|...|++++|+|++. ++++++.||+|++||++++++...+.
T Consensus 144 ~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~ 223 (357)
T 4g56_B 144 TLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFC 223 (357)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCT
T ss_pred EEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeec
Confidence 999999999999999999999999999999999999999999999999874 78999999999999999988776544
Q ss_pred cCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCC-CEEEEEeCCCeEEEEeCCCCe
Q 005277 503 GHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG-RYMASGDEDGTIMMWDLASGR 580 (704)
Q Consensus 503 ~~~~~V~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg-~~l~sg~~dg~I~iwdl~~~~ 580 (704)
.+...+.+++|+|+ +.+|++|+.|+.|++||+++++++..+.+|...|++++|+|++ ++|++|+.||.|+|||+.+++
T Consensus 224 ~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~ 303 (357)
T 4g56_B 224 ASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSE 303 (357)
T ss_dssp TCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCE
T ss_pred cccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCc
Confidence 56678999999997 5789999999999999999999999999999999999999987 579999999999999999998
Q ss_pred eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCC-CCCEEEEEeCCCcEEEEeCCCCcc
Q 005277 581 CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASC-EGSLLASGSADCTVKLWDVTTSTK 657 (704)
Q Consensus 581 ~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~lasgs~Dg~V~iWd~~~~~~ 657 (704)
++..+ +|.+.|++++| +| ++.+|++||.||+|++|++.+...
T Consensus 304 ~~~~~-~H~~~V~~vaf----------------------------------sP~d~~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 304 VFRDL-SHRDFVTGVAW----------------------------------SPLDHSKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp EEEEC-CCSSCEEEEEE----------------------------------CSSSTTEEEEEETTSCEEEEECC----
T ss_pred EeEEC-CCCCCEEEEEE----------------------------------eCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence 87654 79999999999 98 799999999999999999977543
No 42
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.6e-36 Score=327.25 Aligned_cols=272 Identities=24% Similarity=0.418 Sum_probs=238.2
Q ss_pred cCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCC
Q 005277 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (704)
Q Consensus 329 ~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (704)
...+++|+.... .+..++..|...|.+++|+|+|++||+|+.|+.|+||++..... ..
T Consensus 87 D~~v~iWd~~~~-~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~---------------------~~ 144 (380)
T 3iz6_a 87 DGRLIVWNALTS-QKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQAD---------------------RD 144 (380)
T ss_dssp TSEEEEEETTTT-EEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSS---------------------CC
T ss_pred CCeEEEEECCCC-ccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCcc---------------------cc
Confidence 457888876543 44567788999999999999999999999999999999875211 01
Q ss_pred CCccceeeccCCccCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEe-----ecCCcCeeEEEEcC-CCCEEEEE
Q 005277 409 GRKRSYTLYQGHSGPVYSASFSPLG-DFILSSSADTTIRLWSTKLNANLVCY-----KGHNYPVWDVQFNP-QGHYFASS 481 (704)
Q Consensus 409 ~~~~~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~Dg~I~lwd~~~~~~~~~~-----~~h~~~V~~v~~sp-~~~~l~sg 481 (704)
........+.+|.+.|.++.|+|++ ..|++|+.|++|++||+.+++.+..+ .+|...|.+++|++ ++.+|++|
T Consensus 145 ~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg 224 (380)
T 3iz6_a 145 GNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISG 224 (380)
T ss_dssp CSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEE
T ss_pred CCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEE
Confidence 1123445678999999999999975 46999999999999999999988877 67999999999987 88999999
Q ss_pred eCCCeEEEEECC-CCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCC-------CEEEE
Q 005277 482 SHDRTARIWSMD-RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS-------MILSL 553 (704)
Q Consensus 482 s~dg~i~lwd~~-~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~-------~i~~l 553 (704)
+.||+|++||++ ....+..+.+|...|.+++|+|++++|++|+.||+|++||+++++++..+..+.. .|+++
T Consensus 225 s~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~ 304 (380)
T 3iz6_a 225 SCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSV 304 (380)
T ss_dssp ETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEE
T ss_pred ECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEE
Confidence 999999999998 4578889999999999999999999999999999999999999999988765432 48999
Q ss_pred EEecCCCEEEEEeCCCeEEEEeCCCCeeeeee----cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeec
Q 005277 554 AMSPDGRYMASGDEDGTIMMWDLASGRCVTPL----MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFG 629 (704)
Q Consensus 554 ~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~----~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (704)
+|+|+|++|++|+.||.|++||+.+++.+..+ .+|.+.|.+++|
T Consensus 305 ~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~-------------------------------- 352 (380)
T 3iz6_a 305 AFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGL-------------------------------- 352 (380)
T ss_dssp EECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEE--------------------------------
T ss_pred EECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEE--------------------------------
Confidence 99999999999999999999999999887776 689999999999
Q ss_pred ccCCCCCEEEEEeCCCcEEEEeCCCCc
Q 005277 630 CASCEGSLLASGSADCTVKLWDVTTST 656 (704)
Q Consensus 630 ~~s~~g~~lasgs~Dg~V~iWd~~~~~ 656 (704)
+|+|.+|++|+.||+|+||++....
T Consensus 353 --s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 353 --SSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp --CSSSSEEEEECTTSCEEEEECCSSS
T ss_pred --CCCCCEEEEeeCCCCEEEEecCCCc
Confidence 9999999999999999999997653
No 43
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.5e-36 Score=319.39 Aligned_cols=270 Identities=21% Similarity=0.293 Sum_probs=225.5
Q ss_pred cCeEeecCCCCCCeE-EE-EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccC
Q 005277 329 RNRVHLSSAALPSVS-FY-TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG 406 (704)
Q Consensus 329 ~~~~~l~~~~~p~~~-~~-~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (704)
...+++|........ .. ...+|...|.+++|+|+|++||+|+.|+.|+||++...
T Consensus 37 D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~----------------------- 93 (345)
T 3fm0_A 37 DRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQD----------------------- 93 (345)
T ss_dssp TSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-----------------------
T ss_pred CCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCC-----------------------
Confidence 356788876544322 22 23578999999999999999999999999999998641
Q ss_pred CCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc---eeEEeecCCcCeeEEEEcCCCCEEEEEeC
Q 005277 407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA---NLVCYKGHNYPVWDVQFNPQGHYFASSSH 483 (704)
Q Consensus 407 ~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~---~~~~~~~h~~~V~~v~~sp~~~~l~sgs~ 483 (704)
.......+.+|.++|.+++|+|++++|++|+.|++|++||+..+. ++..+.+|...|.+++|+|++.+|++|+.
T Consensus 94 ---~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~ 170 (345)
T 3fm0_A 94 ---DFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASY 170 (345)
T ss_dssp ----EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEET
T ss_pred ---CeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeC
Confidence 123456788999999999999999999999999999999998764 45667889999999999999999999999
Q ss_pred CCeEEEEECCCCc--eeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC---------------cEEEEeec-
Q 005277 484 DRTARIWSMDRIQ--PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG---------------ECVRIFIG- 545 (704)
Q Consensus 484 dg~i~lwd~~~~~--~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~---------------~~~~~~~~- 545 (704)
|++|++||.+... +...+.+|...|.+++|+|++++|++|+.|++|++||.... +++..+.+
T Consensus 171 d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (345)
T 3fm0_A 171 DDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGF 250 (345)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSS
T ss_pred CCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCC
Confidence 9999999998765 45678899999999999999999999999999999996321 33445554
Q ss_pred CCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCee---------eeeecCCCceeeeeeeeeeehcccccccccccccc
Q 005277 546 HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC---------VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVST 616 (704)
Q Consensus 546 h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~---------~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~ 616 (704)
|...|.+++|+|++..|++++.|+.|++|+...+.. .....+|...|.+++|
T Consensus 251 h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~------------------- 311 (345)
T 3fm0_A 251 HSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAW------------------- 311 (345)
T ss_dssp CSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEE-------------------
T ss_pred CCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEE-------------------
Confidence 888999999999999999999999999999876421 1233689999999999
Q ss_pred ceeeeeeeEEeecccCCCC-CEEEEEeCCCcEEEEeCCCCccc
Q 005277 617 GFLFYSLTIIYFGCASCEG-SLLASGSADCTVKLWDVTTSTKV 658 (704)
Q Consensus 617 ~~~~~~~~~~~~~~~s~~g-~~lasgs~Dg~V~iWd~~~~~~~ 658 (704)
+|++ .+||+|+.||+|++|++.+++..
T Consensus 312 ---------------~p~~~~~laS~s~Dg~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 312 ---------------NPKEPGLLASCSDDGEVAFWKYQRPEGL 339 (345)
T ss_dssp ---------------CSSSTTEEEEEETTSCEEEEEECC----
T ss_pred ---------------eCCCceEEEEcCCCCcEEEEEecCCCCc
Confidence 9987 59999999999999999887643
No 44
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-35 Score=307.70 Aligned_cols=276 Identities=22% Similarity=0.314 Sum_probs=244.8
Q ss_pred CeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCC
Q 005277 341 SVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH 420 (704)
Q Consensus 341 ~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 420 (704)
.....++.+|.+.|+|++| +++++|++|+.||.|++||+.. ......+..|
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~----------------------------~~~~~~~~~~ 58 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDD----------------------------QWLGTVVYTG 58 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESS----------------------------SEEEEEEEEC
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCC----------------------------CEEEEEeecC
Confidence 3455678899999999999 9999999999999999999865 2344556678
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC---ceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 005277 421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLN---ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP 497 (704)
Q Consensus 421 ~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~---~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~ 497 (704)
.+.|.+++|+|++++|++++.||.|++|++... +.+..+.+|..+|.++.| ++.++++++.||.|++|| ....
T Consensus 59 ~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~ 134 (313)
T 3odt_A 59 QGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSL 134 (313)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEE
T ss_pred CccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcE
Confidence 999999999999999999999999999998754 557778899999999999 578999999999999999 6678
Q ss_pred eEEeccCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCCcEEEEeec-CCCCEEEEEEecCCCEEEEEeCCCeEEEEe
Q 005277 498 LRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIG-HRSMILSLAMSPDGRYMASGDEDGTIMMWD 575 (704)
Q Consensus 498 ~~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~-h~~~i~~l~~spdg~~l~sg~~dg~I~iwd 575 (704)
...+..|...+.++.|+| +++++++++.||.|++|| .++.+..+.. |...|.+++|+|++. +++++.||.|++||
T Consensus 135 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d 211 (313)
T 3odt_A 135 VYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVD 211 (313)
T ss_dssp EEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEE
T ss_pred EEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEE
Confidence 888889999999999998 899999999999999999 5667777777 899999999999998 99999999999999
Q ss_pred CCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCC
Q 005277 576 LASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTS 655 (704)
Q Consensus 576 l~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~ 655 (704)
+++++.+..+.+|...|.++.| +|++ .|++|+.||.|++||+.++
T Consensus 212 ~~~~~~~~~~~~~~~~i~~~~~----------------------------------~~~~-~l~~~~~dg~v~iwd~~~~ 256 (313)
T 3odt_A 212 MHTGDVLRTYEGHESFVYCIKL----------------------------------LPNG-DIVSCGEDRTVRIWSKENG 256 (313)
T ss_dssp TTTCCEEEEEECCSSCEEEEEE----------------------------------CTTS-CEEEEETTSEEEEECTTTC
T ss_pred CCchhhhhhhhcCCceEEEEEE----------------------------------ecCC-CEEEEecCCEEEEEECCCC
Confidence 9999999999999999999999 9998 6899999999999999887
Q ss_pred ccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 656 TKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 656 ~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
.. +..+..+..+|.+++|+|++.+ ++|+.||+
T Consensus 257 ~~---------------~~~~~~~~~~i~~~~~~~~~~~-~~~~~dg~ 288 (313)
T 3odt_A 257 SL---------------KQVITLPAISIWSVDCMSNGDI-IVGSSDNL 288 (313)
T ss_dssp CE---------------EEEEECSSSCEEEEEECTTSCE-EEEETTSC
T ss_pred ce---------------eEEEeccCceEEEEEEccCCCE-EEEeCCCc
Confidence 53 4455677889999999999995 45777764
No 45
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-37 Score=334.04 Aligned_cols=245 Identities=13% Similarity=0.184 Sum_probs=209.9
Q ss_pred EeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEE
Q 005277 347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (704)
Q Consensus 347 ~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 426 (704)
+..+.+.|+|++|+|++++||+|+.||.|+||++.... ......+.+|.++|.+
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~--------------------------~~~~~~~~~h~~~v~~ 60 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG--------------------------WKHARTFSDHDKIVTC 60 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE--------------------------EEECCCBCCCSSCEEE
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc--------------------------eEEEEEEecCCceEEE
Confidence 34467789999999999999999999999999987521 1344567789999999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCc---eeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCc---eeEE
Q 005277 427 ASFSPLGDFILSSSADTTIRLWSTKLNA---NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ---PLRI 500 (704)
Q Consensus 427 l~~sp~~~~l~s~s~Dg~I~lwd~~~~~---~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~---~~~~ 500 (704)
++|+|++++|++++.||+|++||+.++. ....+.+|...|++++|+|++++|++|+.|+.|++||+++.+ ....
T Consensus 61 ~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 140 (377)
T 3dwl_C 61 VDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKH 140 (377)
T ss_dssp EEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEE
T ss_pred EEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeE
Confidence 9999999999999999999999999877 677788899999999999999999999999999999999876 3677
Q ss_pred ecc-CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC------------------CCcEEEEeecCCCCEEEEEEecCCCE
Q 005277 501 MAG-HLSDVDCVRWHINCNYIATGSSDKTVRLWDVS------------------SGECVRIFIGHRSMILSLAMSPDGRY 561 (704)
Q Consensus 501 ~~~-~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~------------------~~~~~~~~~~h~~~i~~l~~spdg~~ 561 (704)
+.+ |...|.+++|+|++++|++|+.|+.|++||+. .++++..+ +|...|.+++|+|+|++
T Consensus 141 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~ 219 (377)
T 3dwl_C 141 LKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNA 219 (377)
T ss_dssp ECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSC
T ss_pred eecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCE
Confidence 777 99999999999999999999999999999985 35567777 89999999999999999
Q ss_pred EEEEeCCCeEEEEeCCCCee----eeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCE
Q 005277 562 MASGDEDGTIMMWDLASGRC----VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSL 637 (704)
Q Consensus 562 l~sg~~dg~I~iwdl~~~~~----~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 637 (704)
|++|+.||.|++||+.+++. +..+.+|...|.++.| +|++.+
T Consensus 220 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~----------------------------------s~~~~~ 265 (377)
T 3dwl_C 220 LAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLW----------------------------------ANESAI 265 (377)
T ss_dssp EEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEE----------------------------------EETTEE
T ss_pred EEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEE----------------------------------cCCCCE
Confidence 99999999999999999987 8889999999999999 999999
Q ss_pred EEEEeCCCcEEEEeCC
Q 005277 638 LASGSADCTVKLWDVT 653 (704)
Q Consensus 638 lasgs~Dg~V~iWd~~ 653 (704)
|++|+.|+.+ +|+..
T Consensus 266 l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 266 VAAGYNYSPI-LLQGN 280 (377)
T ss_dssp EEEESSSSEE-EECCC
T ss_pred EEEEcCCcEE-EEEeC
Confidence 9999876655 66665
No 46
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-36 Score=316.47 Aligned_cols=270 Identities=21% Similarity=0.380 Sum_probs=215.3
Q ss_pred cCeEeecCCCCCC-eEEEEE-ee-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCccccc
Q 005277 329 RNRVHLSSAALPS-VSFYTF-IN-THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII 405 (704)
Q Consensus 329 ~~~~~l~~~~~p~-~~~~~~-~~-~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (704)
...+++|...... ....++ .+ |...|.+++|+|++++||+|+.|+.|+||++......
T Consensus 33 D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~------------------- 93 (330)
T 2hes_X 33 DRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADR------------------- 93 (330)
T ss_dssp SSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------------------------
T ss_pred CCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCc-------------------
Confidence 3467777665433 223333 33 8899999999999999999999999999998541100
Q ss_pred CCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----ceeEEeecCCcCeeEEEEcCCCCEEEEE
Q 005277 406 GPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN----ANLVCYKGHNYPVWDVQFNPQGHYFASS 481 (704)
Q Consensus 406 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~----~~~~~~~~h~~~V~~v~~sp~~~~l~sg 481 (704)
.........+.+|.+.|.+++|+|++++|++|+.|++|++||+... +++..+.+|...|.+++|+|++.+|++|
T Consensus 94 --~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~ 171 (330)
T 2hes_X 94 --TFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASS 171 (330)
T ss_dssp ---CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEE
T ss_pred --cccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEE
Confidence 0012345667899999999999999999999999999999999532 4567788999999999999999999999
Q ss_pred eCCCeEEEEECCCC--ceeEEeccCCCCeeEEEEcCC--CCEEEEEECCCcEEEEeCCCC--------cEEEEeec-CCC
Q 005277 482 SHDRTARIWSMDRI--QPLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSG--------ECVRIFIG-HRS 548 (704)
Q Consensus 482 s~dg~i~lwd~~~~--~~~~~~~~~~~~V~~v~~~p~--~~~l~tgs~dg~I~iwd~~~~--------~~~~~~~~-h~~ 548 (704)
+.|++|++||..+. +++..+.+|...|.+++|+|+ +.+|++|+.|++|++||++++ .+...+.+ |..
T Consensus 172 s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~ 251 (330)
T 2hes_X 172 SYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKR 251 (330)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSS
T ss_pred cCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccccccc
Confidence 99999999998766 577889999999999999998 779999999999999999764 34555555 899
Q ss_pred CEEEEEEecCCCEEEEEeCCCeEEEEeCCCCe--eeee-ecCCCc-eeeeeeeeeeehccccccccccccccceeeeeee
Q 005277 549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGR--CVTP-LMGHTS-CVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLT 624 (704)
Q Consensus 549 ~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~--~~~~-~~~h~~-~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (704)
.|.+++|++++ +|++++.||.|++||..++. .+.. ..+|.. .|.+++|
T Consensus 252 ~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~--------------------------- 303 (330)
T 2hes_X 252 QVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKW--------------------------- 303 (330)
T ss_dssp CEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEE---------------------------
T ss_pred ceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEE---------------------------
Confidence 99999999765 89999999999999998874 3333 367887 8999999
Q ss_pred EEeecccCC--CCCEEEEEeCCCcEEEEeCCC
Q 005277 625 IIYFGCASC--EGSLLASGSADCTVKLWDVTT 654 (704)
Q Consensus 625 ~~~~~~~s~--~g~~lasgs~Dg~V~iWd~~~ 654 (704)
+| ++++|++|+.||+|+||++..
T Consensus 304 -------~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 304 -------LELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp -------C-----CCEEEEETTSEEEEEEC--
T ss_pred -------ecCCCceEEEEecCCCcEEEEEecc
Confidence 77 689999999999999999865
No 47
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.4e-35 Score=311.92 Aligned_cols=261 Identities=23% Similarity=0.411 Sum_probs=229.1
Q ss_pred CeEeecCCCC----CCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCccccc
Q 005277 330 NRVHLSSAAL----PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII 405 (704)
Q Consensus 330 ~~~~l~~~~~----p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (704)
..+++|.... ...+..++.+|...|.+++|+|++++|++|+.||+|+|||+.+
T Consensus 40 ~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~----------------------- 96 (319)
T 3frx_A 40 KTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT----------------------- 96 (319)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-----------------------
T ss_pred ccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCC-----------------------
Confidence 4566665421 1234567889999999999999999999999999999999875
Q ss_pred CCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCC------CCEEE
Q 005277 406 GPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ------GHYFA 479 (704)
Q Consensus 406 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~------~~~l~ 479 (704)
......+.+|.+.|.+++|+|++.+|++|+.|++|++||+. +.++..+.+|...|.++.|+|. +..++
T Consensus 97 -----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~ 170 (319)
T 3frx_A 97 -----GETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTII 170 (319)
T ss_dssp -----TEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEE
T ss_pred -----CCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEE
Confidence 34556778999999999999999999999999999999997 6678888999999999999985 45899
Q ss_pred EEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCC
Q 005277 480 SSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG 559 (704)
Q Consensus 480 sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg 559 (704)
+++.|++|++||+++.+....+.+|...|.+++|+|++++|++|+.||+|++||+.+++++..+.. ...|.+++|+|+|
T Consensus 171 s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~ 249 (319)
T 3frx_A 171 SAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNR 249 (319)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEECSSS
T ss_pred EEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEEcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999988875 4689999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeeeeecC--------CCceeeeeeeeeeehccccccccccccccceeeeeeeEEeeccc
Q 005277 560 RYMASGDEDGTIMMWDLASGRCVTPLMG--------HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCA 631 (704)
Q Consensus 560 ~~l~sg~~dg~I~iwdl~~~~~~~~~~~--------h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (704)
.+|++++.+ .+++|++..+..+..+.. |...+.+++|
T Consensus 250 ~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---------------------------------- 294 (319)
T 3frx_A 250 YWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAW---------------------------------- 294 (319)
T ss_dssp SEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEE----------------------------------
T ss_pred CEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEE----------------------------------
Confidence 999988765 599999998877666543 3556788888
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCCC
Q 005277 632 SCEGSLLASGSADCTVKLWDVTTS 655 (704)
Q Consensus 632 s~~g~~lasgs~Dg~V~iWd~~~~ 655 (704)
+|+|++|++|+.||.|+|||+.++
T Consensus 295 spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 295 SADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp CTTSSEEEEEETTSCEEEEEEEEC
T ss_pred CCCCCEEEEeecCceEEEEEEeec
Confidence 999999999999999999998653
No 48
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-36 Score=324.49 Aligned_cols=289 Identities=17% Similarity=0.248 Sum_probs=246.6
Q ss_pred EEEeeCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEEc----ccCCc------cccccccCCCCCCCCcccccCCCCCccc
Q 005277 345 YTFINTHNGLNCASISQDGS-LVAGGFSDSSLKVWDM----AKLGQ------QAVSSGLQGENDTTPREDIIGPNGRKRS 413 (704)
Q Consensus 345 ~~~~~~~~~V~~~~fs~dg~-~lasg~~dg~I~iwdl----~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (704)
+..+.|.+.|+|++|+|+++ +||+|+.||.|++|++ ..... ...... ....
T Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~ 100 (425)
T 1r5m_A 39 LKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRH------------------PFAL 100 (425)
T ss_dssp CEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEEC------------------CCCC
T ss_pred eeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccc------------------cccc
Confidence 34567779999999999999 9999999999999999 54221 000000 0000
Q ss_pred eeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECC
Q 005277 414 YTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD 493 (704)
Q Consensus 414 ~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~ 493 (704)
.....+|.+.|++++|+|++++|++|+.||.|++|| .++..+..+.+|..+|.+++|+|++++|++++.||.|++||+.
T Consensus 101 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 179 (425)
T 1r5m_A 101 SASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVI 179 (425)
T ss_dssp C------CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETT
T ss_pred cccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECC
Confidence 012234788999999999999999999999999999 5688888999999999999999999999999999999999999
Q ss_pred CCceeEEeccCCCC---------------eeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecC
Q 005277 494 RIQPLRIMAGHLSD---------------VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD 558 (704)
Q Consensus 494 ~~~~~~~~~~~~~~---------------V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spd 558 (704)
+++.+..+..+... +.+++|+|++ .+++++.+|.|++||+++++.+..+.+|...|.+++|+|+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~ 258 (425)
T 1r5m_A 180 SGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDT 258 (425)
T ss_dssp TTEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETT
T ss_pred CCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCC
Confidence 99999988887776 9999999975 6888999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEE
Q 005277 559 GRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLL 638 (704)
Q Consensus 559 g~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l 638 (704)
+++|++++.||.|++||+.+++.+..+.+|...|.++.| +|++ ++
T Consensus 259 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~----------------------------------~~~~-~l 303 (425)
T 1r5m_A 259 NKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASW----------------------------------VGDD-KV 303 (425)
T ss_dssp TTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEE----------------------------------ETTT-EE
T ss_pred CCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEE----------------------------------CCCC-EE
Confidence 999999999999999999999999999999999999999 8988 99
Q ss_pred EEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 639 ASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 639 asgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
++++.||.|++||+.++.. +..+..+..+|.+++|+|++.+|++|+.||+
T Consensus 304 ~~~~~d~~i~i~d~~~~~~---------------~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 353 (425)
T 1r5m_A 304 ISCSMDGSVRLWSLKQNTL---------------LALSIVDGVPIFAGRISQDGQKYAVAFMDGQ 353 (425)
T ss_dssp EEEETTSEEEEEETTTTEE---------------EEEEECTTCCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEeCCCcEEEEECCCCcE---------------eEecccCCccEEEEEEcCCCCEEEEEECCCe
Confidence 9999999999999987643 4455677889999999999999999999874
No 49
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=9.8e-36 Score=322.66 Aligned_cols=246 Identities=29% Similarity=0.583 Sum_probs=219.1
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcC
Q 005277 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (704)
Q Consensus 352 ~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 431 (704)
..|++++|+|+|++||+|+.||.|+|||+.+ ......+.+|...|++++|+|
T Consensus 124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~----------------------------~~~~~~~~~h~~~v~~~~~~p 175 (393)
T 1erj_A 124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIEN----------------------------RKIVMILQGHEQDIYSLDYFP 175 (393)
T ss_dssp CBEEEEEECTTSSEEEEEETTSCEEEEETTT----------------------------TEEEEEECCCSSCEEEEEECT
T ss_pred eeEEEEEECCCCCEEEEEcCCCeEEEEECCC----------------------------CcEEEEEccCCCCEEEEEEcC
Confidence 3599999999999999999999999999875 234566789999999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeEEe-------cc
Q 005277 432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPLRIM-------AG 503 (704)
Q Consensus 432 ~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~lwd~~~~~~~~~~-------~~ 503 (704)
++++|++|+.|++|++||+.++++...+. +...+.+++|+| ++.+|++|+.||+|++||++++..+..+ .+
T Consensus 176 ~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~ 254 (393)
T 1erj_A 176 SGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTG 254 (393)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CC
T ss_pred CCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCC
Confidence 99999999999999999999998887776 566899999999 8999999999999999999998877766 57
Q ss_pred CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC------------CcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeE
Q 005277 504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS------------GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTI 571 (704)
Q Consensus 504 ~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~------------~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I 571 (704)
|...|.+++|+|++++|++|+.||+|++||+++ +.+...+.+|...|.+++|+|++.+|++|+.||.|
T Consensus 255 h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v 334 (393)
T 1erj_A 255 HKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGV 334 (393)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEE
T ss_pred CCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeE
Confidence 899999999999999999999999999999975 34566788999999999999999999999999999
Q ss_pred EEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEe
Q 005277 572 MMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWD 651 (704)
Q Consensus 572 ~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd 651 (704)
++||+.+++++..+.+|...|.++.|... .+++|++++|++|+.||+|+||+
T Consensus 335 ~iwd~~~~~~~~~l~~h~~~v~~v~~~~~----------------------------~~~~p~~~~l~sgs~Dg~i~iW~ 386 (393)
T 1erj_A 335 LFWDKKSGNPLLMLQGHRNSVISVAVANG----------------------------SSLGPEYNVFATGSGDCKARIWK 386 (393)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECSS----------------------------CTTCTTCEEEEEEETTSEEEEEE
T ss_pred EEEECCCCeEEEEECCCCCCEEEEEecCC----------------------------cCcCCCCCEEEEECCCCcEEECc
Confidence 99999999999999999999999988210 01156889999999999999999
Q ss_pred CCC
Q 005277 652 VTT 654 (704)
Q Consensus 652 ~~~ 654 (704)
+..
T Consensus 387 ~~~ 389 (393)
T 1erj_A 387 YKK 389 (393)
T ss_dssp EEE
T ss_pred ccc
Confidence 864
No 50
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-36 Score=330.21 Aligned_cols=329 Identities=14% Similarity=0.193 Sum_probs=246.3
Q ss_pred EEEEE-eeCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCC
Q 005277 343 SFYTF-INTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH 420 (704)
Q Consensus 343 ~~~~~-~~~~~~V~~~~fs~-dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 420 (704)
...++ .+|.+.|+|++|+| ++++||+|+.||.|+|||+....... ....... .+|
T Consensus 54 ~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~----------------------~~~~~~~-~~h 110 (437)
T 3gre_A 54 LIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE----------------------VYSSSLT-YDC 110 (437)
T ss_dssp EEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC----------------------CCSCSEE-EEC
T ss_pred EEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc----------------------ccceeee-ccC
Confidence 34455 66789999999999 99999999999999999986511000 0011111 258
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCeEEEEeCC---CCceeEEeec------------CCcCeeEEE--EcCCCCEEEEEeC
Q 005277 421 SGPVYSASFSPLGDFILSSSADTTIRLWSTK---LNANLVCYKG------------HNYPVWDVQ--FNPQGHYFASSSH 483 (704)
Q Consensus 421 ~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~---~~~~~~~~~~------------h~~~V~~v~--~sp~~~~l~sgs~ 483 (704)
.++|.+++|+|++++|++|+.||+|++||+. +++......+ +...+.++. +++++.++++|+.
T Consensus 111 ~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 190 (437)
T 3gre_A 111 SSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTN 190 (437)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEET
T ss_pred CCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeC
Confidence 9999999999999999999999999999995 5555444332 445566666 5678999999999
Q ss_pred CCeEEEEECCCCceeEEecc--CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEee-cCCCCEEEEEEec---
Q 005277 484 DRTARIWSMDRIQPLRIMAG--HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSP--- 557 (704)
Q Consensus 484 dg~i~lwd~~~~~~~~~~~~--~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~i~~l~~sp--- 557 (704)
||.|++||+++++++..+.+ |...|.+++|+|++++|++|+.||.|++||+++++++..+. .|...|.+++|+|
T Consensus 191 d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s 270 (437)
T 3gre_A 191 LSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYG 270 (437)
T ss_dssp TSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTC
T ss_pred CCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccC
Confidence 99999999999999999988 89999999999999999999999999999999999999886 7888999996664
Q ss_pred -CCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCC
Q 005277 558 -DGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGS 636 (704)
Q Consensus 558 -dg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 636 (704)
++.+|++|+.||.|++||+++++.+..+.+|...+..+.|.+....... ....+ ......+...+++ ++.
T Consensus 271 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~--~~~~~~v~~l~~~-~~~ 341 (437)
T 3gre_A 271 KNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEE------LNFCG--IRSLNALSTISVS-NDK 341 (437)
T ss_dssp TTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGG------CCCCC--CCSGGGGCCEEEE-TTE
T ss_pred CCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccccccccc------ceecc--cccCCceEEEEEC-Cce
Confidence 6889999999999999999999999999999888877766322100000 00000 0000111222336 678
Q ss_pred EEEEEeCCCcEEEEeCCCCccccccccccC----------------------ccccccccccCCCCcCeEEEEEccC--C
Q 005277 637 LLASGSADCTVKLWDVTTSTKVLKTEEKSG----------------------TNRLRSLKTLPTKSTPVYSLQFSRR--N 692 (704)
Q Consensus 637 ~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~----------------------~~~~~~l~~~~~~~~~V~~l~fs~~--g 692 (704)
+|++|+.||.|++||+.++........... ......+.....|...|++++|+++ +
T Consensus 342 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~ 421 (437)
T 3gre_A 342 ILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDET 421 (437)
T ss_dssp EEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSS
T ss_pred EEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCc
Confidence 999999999999999998876544432100 0001112234458999999999998 8
Q ss_pred cEEEEeecCCC
Q 005277 693 LLFAAGALSKT 703 (704)
Q Consensus 693 ~~La~gs~dgt 703 (704)
.+|++|+.||+
T Consensus 422 ~~l~s~~~dG~ 432 (437)
T 3gre_A 422 PLLVACDNSGL 432 (437)
T ss_dssp EEEEEEETTSC
T ss_pred eEEEEEcCCce
Confidence 89999999985
No 51
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.7e-35 Score=350.60 Aligned_cols=281 Identities=22% Similarity=0.361 Sum_probs=255.7
Q ss_pred EEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCe
Q 005277 345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (704)
Q Consensus 345 ~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 424 (704)
.++.+|.+.|+|++|+|++++||+|+.||.|+|||+.+ ......+.+|.++|
T Consensus 7 ~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~----------------------------~~~~~~~~~~~~~v 58 (814)
T 3mkq_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYET----------------------------QVEVRSIQVTETPV 58 (814)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTT----------------------------TEEEEEEECCSSCE
T ss_pred eeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCC----------------------------CceEEEEecCCCcE
Confidence 45788999999999999999999999999999999865 33556677899999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceeEEecc
Q 005277 425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-QPLRIMAG 503 (704)
Q Consensus 425 ~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~-~~~~~~~~ 503 (704)
.+++|+|++++|++|+.||.|++||+.+++.+..+.+|...|++++|+|++.++++|+.||+|++||++++ .....+.+
T Consensus 59 ~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 138 (814)
T 3mkq_A 59 RAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG 138 (814)
T ss_dssp EEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEEC
T ss_pred EEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999886 66778889
Q ss_pred CCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCCcEEEEeecCC-CCEEEEEEec--CCCEEEEEeCCCeEEEEeCCCC
Q 005277 504 HLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-SMILSLAMSP--DGRYMASGDEDGTIMMWDLASG 579 (704)
Q Consensus 504 ~~~~V~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-~~i~~l~~sp--dg~~l~sg~~dg~I~iwdl~~~ 579 (704)
|...|.+++|+| +++.|++++.||.|++||+.++.....+..+. ..+.+++|+| ++.+|++|+.||.|++||+.++
T Consensus 139 ~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 218 (814)
T 3mkq_A 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK 218 (814)
T ss_dssp CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT
T ss_pred CCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 999999999999 88999999999999999999888777776655 8899999999 9999999999999999999999
Q ss_pred eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccc
Q 005277 580 RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVL 659 (704)
Q Consensus 580 ~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~ 659 (704)
+.+..+.+|...|.++.| +|++.+|++|+.||.|++||+.++..
T Consensus 219 ~~~~~~~~~~~~v~~~~~----------------------------------~~~~~~l~~~~~dg~v~vwd~~~~~~-- 262 (814)
T 3mkq_A 219 SCVATLEGHMSNVSFAVF----------------------------------HPTLPIIISGSEDGTLKIWNSSTYKV-- 262 (814)
T ss_dssp EEEEEEECCSSCEEEEEE----------------------------------CSSSSEEEEEETTSCEEEEETTTCSE--
T ss_pred cEEEEEcCCCCCEEEEEE----------------------------------cCCCCEEEEEeCCCeEEEEECCCCcE--
Confidence 999999999999999999 99999999999999999999987643
Q ss_pred ccccccCccccccccccCCCCcCeEEEEEccCCc--EEEEeecCC
Q 005277 660 KTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL--LFAAGALSK 702 (704)
Q Consensus 660 ~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~--~La~gs~dg 702 (704)
+..+..+..+|.+++|+|+|. ++++|+.++
T Consensus 263 -------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 294 (814)
T 3mkq_A 263 -------------EKTLNVGLERSWCIATHPTGRKNYIASGFDNG 294 (814)
T ss_dssp -------------EEEECCSSSSEEEEEECTTCGGGEEEEEETTE
T ss_pred -------------EEEeecCCCcEEEEEEccCCCceEEEEEeCCC
Confidence 445566778899999999986 577776543
No 52
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.2e-35 Score=323.55 Aligned_cols=280 Identities=20% Similarity=0.289 Sum_probs=235.6
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcC
Q 005277 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (704)
Q Consensus 352 ~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 431 (704)
..+.+..|++++++||+|+.||.|++||+.. ......+.+|.+.|++++|+|
T Consensus 98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------------------------~~~~~~~~~h~~~v~~~~~~~ 149 (420)
T 3vl1_A 98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNF----------------------------NLQREIDQAHVSEITKLKFFP 149 (420)
T ss_dssp CEEEEEEECSSSCEEEEEETTSCEEEECTTS----------------------------CEEEEETTSSSSCEEEEEECT
T ss_pred CceEEEEEecCCCEEEEEECCCCEEEEeCCC----------------------------cceeeecccccCccEEEEECC
Confidence 4456668899999999999999999999865 234556678999999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc---CC---
Q 005277 432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG---HL--- 505 (704)
Q Consensus 432 ~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~---~~--- 505 (704)
++++|++|+.||+|++||+.+++.+..+.+|..+|++++|+|++.+|++|+.||+|++||+++++.+..+.. +.
T Consensus 150 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v 229 (420)
T 3vl1_A 150 SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGV 229 (420)
T ss_dssp TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCE
T ss_pred CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999998888874 33
Q ss_pred ------------------CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEee-cCCCCEEEEEEecCCC-EEEEE
Q 005277 506 ------------------SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSPDGR-YMASG 565 (704)
Q Consensus 506 ------------------~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~i~~l~~spdg~-~l~sg 565 (704)
..+.+++|+|++++|++|+.||.|++||+++++.+..+. +|...|.+++|+|++. +|++|
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g 309 (420)
T 3vl1_A 230 NSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAG 309 (420)
T ss_dssp EEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEE
T ss_pred cEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEE
Confidence 445555568899999999999999999999998777664 5788999999999999 99999
Q ss_pred eCCCeEEEEeCCCCee-eeeecC-CCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeC
Q 005277 566 DEDGTIMMWDLASGRC-VTPLMG-HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSA 643 (704)
Q Consensus 566 ~~dg~I~iwdl~~~~~-~~~~~~-h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~ 643 (704)
+.||.|++||+++++. +..+.+ |...|.++.+ +++.+|++|+.
T Consensus 310 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-----------------------------------~~~~~l~s~~~ 354 (420)
T 3vl1_A 310 YENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-----------------------------------AAGALFVSSGF 354 (420)
T ss_dssp ETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-----------------------------------ETTEEEEEETT
T ss_pred eCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-----------------------------------CCCCEEEEecC
Confidence 9999999999998754 667766 6677877754 46789999999
Q ss_pred CCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCc----EEEEeec
Q 005277 644 DCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL----LFAAGAL 700 (704)
Q Consensus 644 Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~----~La~gs~ 700 (704)
||.|++|++........... ......+..+...|.+++|+|++. ++++|+.
T Consensus 355 d~~v~iw~~~~~~~~~~~~~------~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~ 409 (420)
T 3vl1_A 355 DTSIKLDIISDPESERPAIE------FETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKN 409 (420)
T ss_dssp TEEEEEEEECCTTCCSCEEC------TTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETT
T ss_pred CccEEEEeccCCCCCcccee------ccCccEEccCCcceEEEEEccCCCCcceEEEEcCC
Confidence 99999999987543221111 111233567888999999999999 5665543
No 53
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9e-37 Score=341.62 Aligned_cols=295 Identities=10% Similarity=0.022 Sum_probs=228.5
Q ss_pred CCCCEEEEEEcCCC---------CEEEE-------------------EeCCCcEEEEEcccCCccccccccCCCCCCCCc
Q 005277 350 THNGLNCASISQDG---------SLVAG-------------------GFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPR 401 (704)
Q Consensus 350 ~~~~V~~~~fs~dg---------~~las-------------------g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~ 401 (704)
+.+.|.|++|+|++ ++||+ |+.||+|+||++......
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~--------------- 196 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLH--------------- 196 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCC---------------
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCC---------------
Confidence 56677777777765 55555 557889999998652110
Q ss_pred ccccCCCCCccceeeccCCccCeEEEEEcCC------CCEEEEEeCCCeEEEEeCCCCce-----------eEEeecCCc
Q 005277 402 EDIIGPNGRKRSYTLYQGHSGPVYSASFSPL------GDFILSSSADTTIRLWSTKLNAN-----------LVCYKGHNY 464 (704)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~------~~~l~s~s~Dg~I~lwd~~~~~~-----------~~~~~~h~~ 464 (704)
......+.+|.+.|.+++|+|+ +.+|++++.||+|++||+..+.. ...+.+|..
T Consensus 197 ---------~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~ 267 (524)
T 2j04_B 197 ---------CVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADS 267 (524)
T ss_dssp ---------EEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTT
T ss_pred ---------ceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCC
Confidence 0112335568899999999997 57999999999999999986642 246788999
Q ss_pred CeeEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceeEEeccCCCCeeEE--EEcCCC-CEEEEEECCCcEEEEeCCCCcEE
Q 005277 465 PVWDVQFNPQGHYFASSSHDRTARIWSMDRI-QPLRIMAGHLSDVDCV--RWHINC-NYIATGSSDKTVRLWDVSSGECV 540 (704)
Q Consensus 465 ~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~-~~~~~~~~~~~~V~~v--~~~p~~-~~l~tgs~dg~I~iwd~~~~~~~ 540 (704)
+|++++|++++ .|++|+.||+|++||++++ .+...+.+|...|.+| .|+|++ .+|++|+.|++|++||+++++++
T Consensus 268 ~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~ 346 (524)
T 2j04_B 268 LITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATT 346 (524)
T ss_dssp CEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHH
T ss_pred CEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcc
Confidence 99999999864 8999999999999999876 4566788999999999 567887 89999999999999999998887
Q ss_pred EEeecCCC--CEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccce
Q 005277 541 RIFIGHRS--MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGF 618 (704)
Q Consensus 541 ~~~~~h~~--~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~ 618 (704)
..+.+|.. .|.+++|+|+++.+++++.|++|++||++++.++..+.+|.+.|++++|
T Consensus 347 ~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~--------------------- 405 (524)
T 2j04_B 347 KTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGV--------------------- 405 (524)
T ss_dssp CEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEEC---------------------
T ss_pred cccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEe---------------------
Confidence 77777753 5889999999999999999999999999999988889999999999999
Q ss_pred eeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccc--------------cccccc-C----------c----cc
Q 005277 619 LFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVL--------------KTEEKS-G----------T----NR 669 (704)
Q Consensus 619 ~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~--------------~~~~~~-~----------~----~~ 669 (704)
+|+|.+|++|+.||+|++||+....... ...... + . ..
T Consensus 406 -------------Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~ 472 (524)
T 2j04_B 406 -------------SRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVN 472 (524)
T ss_dssp -------------CSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC----
T ss_pred -------------CCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccC
Confidence 9999999999999999999976431110 000000 0 0 01
Q ss_pred cccccccCCCCcCeEEEEEccCCc---EEEEeecCCC
Q 005277 670 LRSLKTLPTKSTPVYSLQFSRRNL---LFAAGALSKT 703 (704)
Q Consensus 670 ~~~l~~~~~~~~~V~~l~fs~~g~---~La~gs~dgt 703 (704)
...+..+.+|..+|.+|+|+|++. ++|+|+.+|+
T Consensus 473 g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~ 509 (524)
T 2j04_B 473 DVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGL 509 (524)
T ss_dssp ---------CCCSCCCEEECCSTTTTTEEEEECTTSE
T ss_pred CcceeeecCCCceEEEEECCCCCCccHHHHhhccCce
Confidence 234567788999999999999964 9999999874
No 54
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.2e-36 Score=317.65 Aligned_cols=249 Identities=22% Similarity=0.396 Sum_probs=211.7
Q ss_pred EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (704)
Q Consensus 346 ~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (704)
.+.+|.+.|++++|+|+|++||+|+.|++|+|||+.... ......+.+|.++|.
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~--------------------------~~~~~~l~gH~~~V~ 61 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGG--------------------------QILIADLRGHEGPVW 61 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTE--------------------------EEEEEEEECCSSCEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCC--------------------------cEEEEEEcCCCccEE
Confidence 356899999999999999999999999999999986411 123456789999999
Q ss_pred EEEEcC--CCCEEEEEeCCCeEEEEeCCCCc--eeEEeecCCcCeeEEEEcCC--CCEEEEEeCCCeEEEEECCCCce--
Q 005277 426 SASFSP--LGDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQ--GHYFASSSHDRTARIWSMDRIQP-- 497 (704)
Q Consensus 426 ~l~~sp--~~~~l~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~v~~sp~--~~~l~sgs~dg~i~lwd~~~~~~-- 497 (704)
+++|+| ++++|++|+.|++|++||+.++. ....+.+|...|++++|+|+ +.+|++|+.|++|++||++....
T Consensus 62 ~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~ 141 (316)
T 3bg1_A 62 QVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWE 141 (316)
T ss_dssp EEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEE
T ss_pred EEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcc
Confidence 999986 48899999999999999999763 56678899999999999997 88999999999999999987532
Q ss_pred -eEEeccCCCCeeEEEEcCC-----------------CCEEEEEECCCcEEEEeCCCC---cEEEEeecCCCCEEEEEEe
Q 005277 498 -LRIMAGHLSDVDCVRWHIN-----------------CNYIATGSSDKTVRLWDVSSG---ECVRIFIGHRSMILSLAMS 556 (704)
Q Consensus 498 -~~~~~~~~~~V~~v~~~p~-----------------~~~l~tgs~dg~I~iwd~~~~---~~~~~~~~h~~~i~~l~~s 556 (704)
...+.+|...|.+++|+|+ +.+|++|+.|++|++||++.+ +++..+.+|...|.+++|+
T Consensus 142 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~s 221 (316)
T 3bg1_A 142 VKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWA 221 (316)
T ss_dssp ECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECC
T ss_pred eeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEec
Confidence 3455689999999999997 478999999999999999765 4677788999999999999
Q ss_pred cCC----CEEEEEeCCCeEEEEeCCCC---e-eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEee
Q 005277 557 PDG----RYMASGDEDGTIMMWDLASG---R-CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYF 628 (704)
Q Consensus 557 pdg----~~l~sg~~dg~I~iwdl~~~---~-~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (704)
|++ .+|++|+.||.|++||+.+. . ....+..|...|++++|
T Consensus 222 p~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~------------------------------- 270 (316)
T 3bg1_A 222 PSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSW------------------------------- 270 (316)
T ss_dssp CCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEE-------------------------------
T ss_pred CCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEE-------------------------------
Confidence 987 89999999999999998763 1 22345678899999999
Q ss_pred cccCCCCCEEEEEeCCCcEEEEeCCC
Q 005277 629 GCASCEGSLLASGSADCTVKLWDVTT 654 (704)
Q Consensus 629 ~~~s~~g~~lasgs~Dg~V~iWd~~~ 654 (704)
+|++++|++|+.||+|+||+...
T Consensus 271 ---sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 271 ---SITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp ---CTTTCCEEEEESSSCEEEEEECT
T ss_pred ---cCCCCEEEEEcCCCeEEEEEECC
Confidence 99999999999999999999754
No 55
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.8e-36 Score=330.39 Aligned_cols=291 Identities=18% Similarity=0.215 Sum_probs=224.6
Q ss_pred EEeeCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCe
Q 005277 346 TFINTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (704)
Q Consensus 346 ~~~~~~~~V~~~~fs~-dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 424 (704)
+...|...|+|++|+| ++++||+|+.||.|+|||+.... ......+.+|.++|
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~--------------------------~~~~~~~~gH~~~V 167 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD--------------------------KPTFIKGIGAGGSI 167 (435)
T ss_dssp EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCS--------------------------CCEEECCCSSSCCC
T ss_pred cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCC--------------------------ceeEEEccCCCCCE
Confidence 4567889999999999 57899999999999999987521 22344567899999
Q ss_pred EEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEeec--CCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe
Q 005277 425 YSASFSP-LGDFILSSSADTTIRLWSTKLNANLVCYKG--HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM 501 (704)
Q Consensus 425 ~~l~~sp-~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~--h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~ 501 (704)
++|+|+| ++.+|++|+.||+|++||++++........ +...+.+++|+|++.+|++|+.||.|++||++. +.+..+
T Consensus 168 ~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~ 246 (435)
T 4e54_B 168 TGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNL 246 (435)
T ss_dssp CEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCS
T ss_pred EEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEE
Confidence 9999998 678999999999999999986544433333 344678999999999999999999999999975 566778
Q ss_pred ccCCCCeeEEEEcCCCC-EEEEEECCCcEEEEeCCCCcEEEE---eecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 005277 502 AGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSGECVRI---FIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA 577 (704)
Q Consensus 502 ~~~~~~V~~v~~~p~~~-~l~tgs~dg~I~iwd~~~~~~~~~---~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~ 577 (704)
.+|...|.+++|+|++. +|++|+.|++|++||+++++.... ..+|...|++++|+|+|++|++|+.||.|+|||+.
T Consensus 247 ~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~ 326 (435)
T 4e54_B 247 RMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSAS 326 (435)
T ss_dssp BCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESS
T ss_pred ecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECC
Confidence 89999999999999875 788999999999999988764433 35799999999999999999999999999999999
Q ss_pred CCeeeeeecCCCcee------eeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEe-CCCcEEEE
Q 005277 578 SGRCVTPLMGHTSCV------WTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGS-ADCTVKLW 650 (704)
Q Consensus 578 ~~~~~~~~~~h~~~V------~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs-~Dg~V~iW 650 (704)
++.....+..|.... ....|.. .......+.++++..+++++ .++.|++|
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~d~~~~~~~~~~~~~i~iw 383 (435)
T 4e54_B 327 QWDCPLGLIPHPHRHFQHLTPIKAAWHP-----------------------RYNLIVVGRYPDPNFKSCTPYELRTIDVF 383 (435)
T ss_dssp SSSSEEEECCCCCCCCSSSCCCBCEECS-----------------------SSSCEEEECCCCTTSCCSSTTCCCCEEEE
T ss_pred CCccceEEecccccccccceeEEEEEcC-----------------------CCCEEEEEEcCCCCeEEEEecCCCEEEEE
Confidence 998888777665321 1122200 00000011144444433333 44689999
Q ss_pred eCCCCccccccccccCccccccccccCCCCcCeEEE-EEccCCcEEEEeec
Q 005277 651 DVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSL-QFSRRNLLFAAGAL 700 (704)
Q Consensus 651 d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l-~fs~~g~~La~gs~ 700 (704)
|..++..+. .....|...|.++ +|+|+|.+||+|+.
T Consensus 384 d~~~g~~~~--------------~l~~~~~~~v~s~~~fspdg~~lasg~d 420 (435)
T 4e54_B 384 DGNSGKMMC--------------QLYDPESSGISSLNEFNPMGDTLASAMG 420 (435)
T ss_dssp CSSSCCEEE--------------EECCSSCCCCCCEEEECTTSSCEEEECS
T ss_pred ECCCCcEEE--------------EEeCCCCCcEEEEEEECCCCCEEEEEcC
Confidence 998876431 1234567788887 69999999999873
No 56
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2e-35 Score=323.08 Aligned_cols=298 Identities=26% Similarity=0.432 Sum_probs=259.1
Q ss_pred ccccCcCCCCCCCCCCCCCCCCChhHHHHHHHhccCeEeecCCCCCCe-EEEEEeeCCCCEEEEEEcCCCCEEEEEeCCC
Q 005277 295 RLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSV-SFYTFINTHNGLNCASISQDGSLVAGGFSDS 373 (704)
Q Consensus 295 ~~~~~~~~~~p~~~~~~~lp~~~~~~~~~~~~~~~~~~~l~~~~~p~~-~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg 373 (704)
+..+..+.++|...+++|+..++|+..+.+...+...|++|+...... ..+.+.+|...|+|++|+|+|++||+|+.||
T Consensus 90 ~~~p~~~l~ap~~~~d~y~~~l~wS~~n~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg 169 (420)
T 4gga_A 90 PSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA 169 (420)
T ss_dssp CSSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTS
T ss_pred CCCCceEEECCCCcccccceeEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCC
Confidence 344667888999999999999999876655667788999999876554 3445567888999999999999999999999
Q ss_pred cEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 005277 374 SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN 453 (704)
Q Consensus 374 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~ 453 (704)
.|+|||+.+ ......+.+|...|.+++|+ +..|++|+.|+.+++||....
T Consensus 170 ~v~iWd~~~----------------------------~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~ 219 (420)
T 4gga_A 170 EVQLWDVQQ----------------------------QKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVA 219 (420)
T ss_dssp CEEEEETTT----------------------------TEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSS
T ss_pred eEEEEEcCC----------------------------CcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeeccc
Confidence 999999875 34566778999999999886 679999999999999998865
Q ss_pred -ceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCc----eeEEeccCCCCeeEEEEcCCC-CEEEEE--EC
Q 005277 454 -ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ----PLRIMAGHLSDVDCVRWHINC-NYIATG--SS 525 (704)
Q Consensus 454 -~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~----~~~~~~~~~~~V~~v~~~p~~-~~l~tg--s~ 525 (704)
..+..+.+|...+..+.|+|++.++++++.|+.+++|+...++ .+.....|...|.+++|+|.+ .+++++ +.
T Consensus 220 ~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~ 299 (420)
T 4gga_A 220 EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS 299 (420)
T ss_dssp SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTT
T ss_pred ceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecC
Confidence 4467788999999999999999999999999999999998754 456777899999999999965 555554 47
Q ss_pred CCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEe--CCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehc
Q 005277 526 DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD--EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLV 603 (704)
Q Consensus 526 dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~--~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~ 603 (704)
|++|++||+.+++++..+..| ..+.++.|+|+++.+++++ .||.|+|||+.+++++..+.+|.+.|++++|
T Consensus 300 D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~------ 372 (420)
T 4gga_A 300 DRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTM------ 372 (420)
T ss_dssp TCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEE------
T ss_pred CCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEE------
Confidence 999999999999999888655 5789999999999988765 7899999999999999999999999999999
Q ss_pred cccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcc
Q 005277 604 TNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTK 657 (704)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~ 657 (704)
+|+|.+|+||+.||+|+|||+.....
T Consensus 373 ----------------------------spdg~~l~S~s~D~tvriWdv~~~~~ 398 (420)
T 4gga_A 373 ----------------------------SPDGATVASAAADETLRLWRCFELDP 398 (420)
T ss_dssp ----------------------------CTTSSCEEEEETTTEEEEECCSCSSC
T ss_pred ----------------------------cCCCCEEEEEecCCeEEEEECCCCCc
Confidence 99999999999999999999987543
No 57
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.3e-34 Score=320.15 Aligned_cols=319 Identities=23% Similarity=0.376 Sum_probs=262.0
Q ss_pred cCCCCCCeEEEEEeeCCCCE-EEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccc
Q 005277 335 SSAALPSVSFYTFINTHNGL-NCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRS 413 (704)
Q Consensus 335 ~~~~~p~~~~~~~~~~~~~V-~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (704)
|..........++.+|.+.| .|+.+ ++++|++|+.||.|++||+.+ ...
T Consensus 105 w~~~~~~~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~----------------------------~~~ 154 (464)
T 3v7d_B 105 WYNPKFVPQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSIN----------------------------KKF 154 (464)
T ss_dssp HHCTTCCCEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTT----------------------------TEE
T ss_pred hcCCCcCcceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCC----------------------------CcE
Confidence 43344445556788898884 66666 567999999999999999875 345
Q ss_pred eeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEc--CCCCEEEEEeCCCeEEEEE
Q 005277 414 YTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN--PQGHYFASSSHDRTARIWS 491 (704)
Q Consensus 414 ~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~s--p~~~~l~sgs~dg~i~lwd 491 (704)
...+.+|.++|.+++|+|++ +|++|+.||+|++||+.+++.+..+.+|..+|.+++|+ +++.++++|+.||+|++||
T Consensus 155 ~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd 233 (464)
T 3v7d_B 155 LLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 233 (464)
T ss_dssp EEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEE
T ss_pred EEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEee
Confidence 56678999999999999988 89999999999999999999999999999999999998 5789999999999999999
Q ss_pred CCCCce-----------------------eEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCC
Q 005277 492 MDRIQP-----------------------LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS 548 (704)
Q Consensus 492 ~~~~~~-----------------------~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~ 548 (704)
+++... +..+.+|...|.++ +++++++++|+.||.|++||+++++++..+.+|..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~ 311 (464)
T 3v7d_B 234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTD 311 (464)
T ss_dssp CCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred CCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC
Confidence 987652 45677888888887 57789999999999999999999999999999999
Q ss_pred CEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeee---hccccccccccccccceee--eee
Q 005277 549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLL---LVTNAYLKISDKVSTGFLF--YSL 623 (704)
Q Consensus 549 ~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~ 623 (704)
.|.+++|+|++++|++|+.||.|++||+++++++..+.+|...|.++.|.... ...++.+++++........ ...
T Consensus 312 ~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 391 (464)
T 3v7d_B 312 RIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHT 391 (464)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEECT
T ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCceeeeecCC
Confidence 99999999999999999999999999999999999999999999999985322 2334556666655433222 122
Q ss_pred eEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277 624 TIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 702 (704)
Q Consensus 624 ~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg 702 (704)
......++++++.++++|+ ||.|++||+.+++.+. ..+..+..+|.+++|+ .+.++++++.+|
T Consensus 392 ~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~--------------~~~~~~~~~v~~v~~~-~~~l~~~~~~~g 454 (464)
T 3v7d_B 392 NLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVH--------------ANILKDADQIWSVNFK-GKTLVAAVEKDG 454 (464)
T ss_dssp TCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEE--------------SCTTTTCSEEEEEEEE-TTEEEEEEEETT
T ss_pred CCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEe--------------hhhccCCCcEEEEEec-CCEEEEEEEeCC
Confidence 2334456689999999999 8999999999876431 1244578899999998 455666666665
No 58
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-36 Score=327.73 Aligned_cols=277 Identities=20% Similarity=0.364 Sum_probs=243.1
Q ss_pred CCEEEEEEcCCCC-EEEEE----------eCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCC
Q 005277 352 NGLNCASISQDGS-LVAGG----------FSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH 420 (704)
Q Consensus 352 ~~V~~~~fs~dg~-~lasg----------~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 420 (704)
..|.|++|+|+++ +||+| +.||.|+||++...... .......|
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~--------------------------~~~~~~~~ 66 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE--------------------------KPIASLQV 66 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC--------------------------SCSCCCCC
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC--------------------------cEEEEEec
Confidence 4688999999987 99999 88999999998752110 01112358
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC----CceeEEeecCCcCeeEEEEcCC-CCEEEEEeCCCeEEEEECCCC
Q 005277 421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKL----NANLVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRI 495 (704)
Q Consensus 421 ~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~----~~~~~~~~~h~~~V~~v~~sp~-~~~l~sgs~dg~i~lwd~~~~ 495 (704)
...|.+++|+|++++|++|+.||.|++|++.+ ...+..+.+|..+|++++|+|+ +.+|++++.||.|++||+.+.
T Consensus 67 ~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 146 (416)
T 2pm9_A 67 DSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKC 146 (416)
T ss_dssp SSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTT
T ss_pred CCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCC
Confidence 89999999999999999999999999999987 4578888999999999999998 899999999999999999887
Q ss_pred c------eeE---EeccCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCcEEEEeecC------CCCEEEEEEecCC
Q 005277 496 Q------PLR---IMAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIFIGH------RSMILSLAMSPDG 559 (704)
Q Consensus 496 ~------~~~---~~~~~~~~V~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h------~~~i~~l~~spdg 559 (704)
+ ... ....|...|.+++|+|+ +.+|++++.||.|++||+++++.+..+..| ...|.+++|+|++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 226 (416)
T 2pm9_A 147 TESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKN 226 (416)
T ss_dssp SSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSC
T ss_pred ccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCC
Confidence 6 322 23578999999999999 799999999999999999999999988876 7899999999997
Q ss_pred -CEEEEEeCCC---eEEEEeCCCC-eeeeeec-CCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCC
Q 005277 560 -RYMASGDEDG---TIMMWDLASG-RCVTPLM-GHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASC 633 (704)
Q Consensus 560 -~~l~sg~~dg---~I~iwdl~~~-~~~~~~~-~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 633 (704)
.+|++++.|+ .|++||++++ .++..+. +|...|.++.| +|
T Consensus 227 ~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~----------------------------------s~ 272 (416)
T 2pm9_A 227 STRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDW----------------------------------CH 272 (416)
T ss_dssp TTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEE----------------------------------CS
T ss_pred CCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEe----------------------------------CC
Confidence 6899999998 9999999986 6777888 89999999999 88
Q ss_pred -CCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCC-cEEEEeecCCC
Q 005277 634 -EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRN-LLFAAGALSKT 703 (704)
Q Consensus 634 -~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g-~~La~gs~dgt 703 (704)
++.+|++|+.||.|++||+.++.. +..+..|..+|.+++|+|++ .+|++|+.||+
T Consensus 273 ~~~~~l~s~~~dg~v~~wd~~~~~~---------------~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~ 329 (416)
T 2pm9_A 273 QDEHLLLSSGRDNTVLLWNPESAEQ---------------LSQFPARGNWCFKTKFAPEAPDLFACASFDNK 329 (416)
T ss_dssp SCSSCEEEEESSSEEEEECSSSCCE---------------EEEEECSSSCCCCEEECTTCTTEEEECCSSSE
T ss_pred CCCCeEEEEeCCCCEEEeeCCCCcc---------------ceeecCCCCceEEEEECCCCCCEEEEEecCCc
Confidence 899999999999999999987643 45667788999999999999 89999999874
No 59
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=4.2e-35 Score=311.51 Aligned_cols=260 Identities=25% Similarity=0.408 Sum_probs=218.4
Q ss_pred CeEeecCCCCC------CeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCccc
Q 005277 330 NRVHLSSAALP------SVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRED 403 (704)
Q Consensus 330 ~~~~l~~~~~p------~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~ 403 (704)
..+++|..... ..+..++.+|...|++++|+|++.+|++|+.||+|++||+.+
T Consensus 49 ~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~--------------------- 107 (343)
T 2xzm_R 49 KTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRT--------------------- 107 (343)
T ss_dssp SCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTS---------------------
T ss_pred CEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC---------------------
Confidence 46777765422 234556789999999999999999999999999999999875
Q ss_pred ccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee---cCCcCeeEEEEcCCC-----
Q 005277 404 IIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK---GHNYPVWDVQFNPQG----- 475 (704)
Q Consensus 404 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~---~h~~~V~~v~~sp~~----- 475 (704)
......+.+|.+.|.+++|+|++++|++|+.|++|++||+. +....... +|...|.+++|+|++
T Consensus 108 -------~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 179 (343)
T 2xzm_R 108 -------GTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL-GECKFSSAEKENHSDWVSCVRYSPIMKSANK 179 (343)
T ss_dssp -------SCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESS-SCEEEECCTTTSCSSCEEEEEECCCCCSCSC
T ss_pred -------CcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEecc-CCceeeeecccCCCceeeeeeeccccccccc
Confidence 23456678999999999999999999999999999999998 33333333 688999999999986
Q ss_pred -----CEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC-CcEEEEeecCCCC
Q 005277 476 -----HYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-GECVRIFIGHRSM 549 (704)
Q Consensus 476 -----~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~-~~~~~~~~~h~~~ 549 (704)
.+|++++.||+|++||. .......+.+|...|.+++|+|++++|++|+.||.|++||+.+ +.....+ .+...
T Consensus 180 ~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~ 257 (343)
T 2xzm_R 180 VQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF-DAGST 257 (343)
T ss_dssp CCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE-ECSSC
T ss_pred cCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceee-cCCCc
Confidence 79999999999999994 4567778889999999999999999999999999999999954 4444444 35567
Q ss_pred EEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeee--eec-----------CCCceeeeeeeeeeehcccccccccccccc
Q 005277 550 ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT--PLM-----------GHTSCVWTLAYRFLLLVTNAYLKISDKVST 616 (704)
Q Consensus 550 i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~--~~~-----------~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~ 616 (704)
|.+++|+|++.++++| .|+.|++||+.+++... .+. +|...|.+++|
T Consensus 258 v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------------------- 317 (343)
T 2xzm_R 258 INQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAW------------------- 317 (343)
T ss_dssp EEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEE-------------------
T ss_pred EEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEE-------------------
Confidence 9999999999988755 57789999998876543 333 67888999999
Q ss_pred ceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCC
Q 005277 617 GFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTS 655 (704)
Q Consensus 617 ~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~ 655 (704)
+|+|.+|++|+.||+|++|++.++
T Consensus 318 ---------------sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 318 ---------------NALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp ---------------CSSSCCEEEEETTSEEEEEEEEEE
T ss_pred ---------------CCCCCeEEEecCCceEEEEEEEcc
Confidence 999999999999999999998654
No 60
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4e-36 Score=327.37 Aligned_cols=272 Identities=17% Similarity=0.260 Sum_probs=233.8
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCC
Q 005277 354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG 433 (704)
Q Consensus 354 V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~ 433 (704)
+++++|+|++++|++|+.||.|++|++.... ....+.+| ..+....|+|++
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~----------------------------~~~~~~~~-~~~~~~~~~~~~ 109 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRD----------------------------GSKMLKRA-DYTAVDTAKLQM 109 (420)
T ss_dssp CTTCEEEEEETTEEEEEETTEEEEEECCSEE----------------------------TTTTSCSC-CEEEEEEECSSS
T ss_pred ccceeeeecCCeEEEEEcCCcEEEEEecccc----------------------------eeeEEecC-CceEEEEEecCC
Confidence 4578999999999999999999999987521 11222334 445566789999
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEE
Q 005277 434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRW 513 (704)
Q Consensus 434 ~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~ 513 (704)
++|++|+.||.|++||+.++.....+.+|...|++++|+|++.+|++|+.||+|++||+++++.+..+.+|...|.+++|
T Consensus 110 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 189 (420)
T 3vl1_A 110 RRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAI 189 (420)
T ss_dssp CEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEE
T ss_pred CEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEE
Confidence 99999999999999999999888888899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEECCCcEEEEeCCCCcEEEEeec---CCCCEEEEE---------------------EecCCCEEEEEeCCC
Q 005277 514 HINCNYIATGSSDKTVRLWDVSSGECVRIFIG---HRSMILSLA---------------------MSPDGRYMASGDEDG 569 (704)
Q Consensus 514 ~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~---h~~~i~~l~---------------------~spdg~~l~sg~~dg 569 (704)
+|++++|++|+.||+|++||+++++.+..+.. |...|.+++ |+|+|++|++|+.||
T Consensus 190 ~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 269 (420)
T 3vl1_A 190 IDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSG 269 (420)
T ss_dssp ETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTS
T ss_pred cCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCC
Confidence 99999999999999999999999999998875 344555554 578999999999999
Q ss_pred eEEEEeCCCCeeeeeec-CCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCC-EEEEEeCCCcE
Q 005277 570 TIMMWDLASGRCVTPLM-GHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGS-LLASGSADCTV 647 (704)
Q Consensus 570 ~I~iwdl~~~~~~~~~~-~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~lasgs~Dg~V 647 (704)
.|++||+++++.+..+. +|...|.++.| +|++. +|++|+.||.|
T Consensus 270 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~----------------------------------~~~~~~~l~~g~~dg~i 315 (420)
T 3vl1_A 270 VITVHNVFSKEQTIQLPSKFTCSCNSLTV----------------------------------DGNNANYIYAGYENGML 315 (420)
T ss_dssp CEEEEETTTCCEEEEECCTTSSCEEEEEE----------------------------------CSSCTTEEEEEETTSEE
T ss_pred eEEEEECCCCceeEEcccccCCCceeEEE----------------------------------eCCCCCEEEEEeCCCeE
Confidence 99999999998877764 58899999999 99998 99999999999
Q ss_pred EEEeCCCCccccccccccCccccccccccCC-CCcCeEEEEEccCCcEEEEeecCCC
Q 005277 648 KLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT-KSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 648 ~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
++||+.++... +..+.. +..+|.++.| +++.+|++|+.||+
T Consensus 316 ~vwd~~~~~~~--------------~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~ 357 (420)
T 3vl1_A 316 AQWDLRSPECP--------------VGEFLINEGTPINNVYF-AAGALFVSSGFDTS 357 (420)
T ss_dssp EEEETTCTTSC--------------SEEEEESTTSCEEEEEE-ETTEEEEEETTTEE
T ss_pred EEEEcCCCcCc--------------hhhhhccCCCCceEEEe-CCCCEEEEecCCcc
Confidence 99999886431 333333 5678888855 57889999998874
No 61
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-35 Score=314.05 Aligned_cols=250 Identities=22% Similarity=0.387 Sum_probs=222.4
Q ss_pred EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (704)
Q Consensus 346 ~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (704)
++.+|.+.|+|++|+|++++||+|+.||.|+||++... .......+.+|.++|+
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~--------------------------~~~~~~~~~~h~~~v~ 59 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE--------------------------THKLIDTLTGHEGPVW 59 (379)
T ss_dssp CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETT--------------------------EEEEEEEECCCSSCEE
T ss_pred EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCC--------------------------cceeeeEecCCCCcEE
Confidence 46789999999999999999999999999999998631 1345567789999999
Q ss_pred EEEEcCC--CCEEEEEeCCCeEEEEeCCCCc--eeEEeecCCcCeeEEEEcCC--CCEEEEEeCCCeEEEEECCCCc--e
Q 005277 426 SASFSPL--GDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQ--GHYFASSSHDRTARIWSMDRIQ--P 497 (704)
Q Consensus 426 ~l~~sp~--~~~l~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~v~~sp~--~~~l~sgs~dg~i~lwd~~~~~--~ 497 (704)
+++|+|+ +++|++|+.||+|++||+.+++ .+..+..|...|++++|+|+ +.+|++++.||.|++||++... .
T Consensus 60 ~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~ 139 (379)
T 3jrp_A 60 RVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS 139 (379)
T ss_dssp EEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCC
T ss_pred EEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCcee
Confidence 9999987 8999999999999999999887 77788889999999999999 9999999999999999998863 4
Q ss_pred eEEeccCCCCeeEEEEcC-------------CCCEEEEEECCCcEEEEeCCCCc----EEEEeecCCCCEEEEEEecC--
Q 005277 498 LRIMAGHLSDVDCVRWHI-------------NCNYIATGSSDKTVRLWDVSSGE----CVRIFIGHRSMILSLAMSPD-- 558 (704)
Q Consensus 498 ~~~~~~~~~~V~~v~~~p-------------~~~~l~tgs~dg~I~iwd~~~~~----~~~~~~~h~~~i~~l~~spd-- 558 (704)
...+.+|...|.+++|+| ++.+|++|+.||.|++||++++. .+..+.+|...|.+++|+|+
T Consensus 140 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~ 219 (379)
T 3jrp_A 140 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL 219 (379)
T ss_dssp EEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS
T ss_pred eEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCC
Confidence 456678999999999999 69999999999999999998764 45677889999999999999
Q ss_pred -CCEEEEEeCCCeEEEEeCCCCe-----eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccC
Q 005277 559 -GRYMASGDEDGTIMMWDLASGR-----CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCAS 632 (704)
Q Consensus 559 -g~~l~sg~~dg~I~iwdl~~~~-----~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 632 (704)
+++|++++.||.|++||+.++. .+.....|...|+++.| +
T Consensus 220 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~----------------------------------s 265 (379)
T 3jrp_A 220 LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASW----------------------------------S 265 (379)
T ss_dssp SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEE----------------------------------C
T ss_pred CCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEE----------------------------------c
Confidence 8999999999999999999863 23333458899999999 9
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCC
Q 005277 633 CEGSLLASGSADCTVKLWDVTTS 655 (704)
Q Consensus 633 ~~g~~lasgs~Dg~V~iWd~~~~ 655 (704)
|++.+|++++.||.|++|++...
T Consensus 266 ~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 266 LSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp SSSCCEEEEESSSSEEEEEEEET
T ss_pred CCCCEEEEecCCCcEEEEeCCCC
Confidence 99999999999999999999743
No 62
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.1e-35 Score=314.12 Aligned_cols=275 Identities=13% Similarity=0.096 Sum_probs=240.9
Q ss_pred eeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEE
Q 005277 348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA 427 (704)
Q Consensus 348 ~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 427 (704)
..|.+.|+|++|+|++++|++|+.||.|+||++..... ........+|...|.++
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~-------------------------~~~~~~~~~~~~~v~~~ 62 (342)
T 1yfq_A 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK-------------------------NVDLLQSLRYKHPLLCC 62 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT-------------------------EEEEEEEEECSSCEEEE
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCc-------------------------cccceeeeecCCceEEE
Confidence 46888999999999999999999999999999875210 11234445899999999
Q ss_pred EEcCCCC-EEEEEeCCCeEEEEeC-CCCceeEEeec--CCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCC---------
Q 005277 428 SFSPLGD-FILSSSADTTIRLWST-KLNANLVCYKG--HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR--------- 494 (704)
Q Consensus 428 ~~sp~~~-~l~s~s~Dg~I~lwd~-~~~~~~~~~~~--h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~--------- 494 (704)
+|+|+++ +|++|+.||.|++||+ .++. ...+.+ |...|++++|+| +.++++++.|+.|++||+++
T Consensus 63 ~~~~~~~~~l~~~~~dg~i~~wd~~~~~~-~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 140 (342)
T 1yfq_A 63 NFIDNTDLQIYVGTVQGEILKVDLIGSPS-FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVK 140 (342)
T ss_dssp EEEESSSEEEEEEETTSCEEEECSSSSSS-EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEE
T ss_pred EECCCCCcEEEEEcCCCeEEEEEeccCCc-eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccccccccccc
Confidence 9999999 9999999999999999 7664 477788 999999999999 99999999999999999987
Q ss_pred CceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC-Cc--EEEEeecCCCCEEEEEEec-CCCEEEEEeCCCe
Q 005277 495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-GE--CVRIFIGHRSMILSLAMSP-DGRYMASGDEDGT 570 (704)
Q Consensus 495 ~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~-~~--~~~~~~~h~~~i~~l~~sp-dg~~l~sg~~dg~ 570 (704)
.+++..+. |...|.+++|+|++ +++++.|+.|++||+++ +. .......|...|.+++|+| +++++++|+.||.
T Consensus 141 ~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~ 217 (342)
T 1yfq_A 141 NLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR 217 (342)
T ss_dssp ESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE
T ss_pred CCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCc
Confidence 66666666 88999999999987 99999999999999998 54 3344557888999999999 9999999999999
Q ss_pred EEEEeCCCC------eeeeeecCCCc---------eeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCC
Q 005277 571 IMMWDLASG------RCVTPLMGHTS---------CVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEG 635 (704)
Q Consensus 571 I~iwdl~~~------~~~~~~~~h~~---------~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g 635 (704)
|++||+... +....+..|.. .|.++.| +|++
T Consensus 218 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----------------------------------s~~~ 263 (342)
T 1yfq_A 218 VAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEF----------------------------------SPRH 263 (342)
T ss_dssp EEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEE----------------------------------CTTT
T ss_pred EEEEEEcCCCcccccccceeeecccccccccccceeEEEEEE----------------------------------cCCC
Confidence 999999887 77778888765 8999999 9999
Q ss_pred CEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCC-CcCeEEEEEccCCcEEEEeecCCC
Q 005277 636 SLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTK-STPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 636 ~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
++|++|+.||.|++||+.++.. +..+..| ..+|.+++ |++.+|++|+.||+
T Consensus 264 ~~l~~~~~dg~i~vwd~~~~~~---------------~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 264 KFLYTAGSDGIISCWNLQTRKK---------------IKNFAKFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp CCEEEEETTSCEEEEETTTTEE---------------EEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred CEEEEecCCceEEEEcCccHhH---------------hhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence 9999999999999999988643 4556677 89999999 99999999999986
No 63
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.2e-34 Score=303.06 Aligned_cols=261 Identities=30% Similarity=0.528 Sum_probs=232.4
Q ss_pred CeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCC
Q 005277 330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG 409 (704)
Q Consensus 330 ~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (704)
..+++|...... ....+.+|...|.+++|+|++++|++|+.||.|++||+..
T Consensus 45 g~i~iw~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~--------------------------- 96 (312)
T 4ery_A 45 KLIKIWGAYDGK-FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS--------------------------- 96 (312)
T ss_dssp SCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT---------------------------
T ss_pred CeEEEEeCCCcc-cchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCC---------------------------
Confidence 467777654433 3445678999999999999999999999999999999875
Q ss_pred CccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEE
Q 005277 410 RKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARI 489 (704)
Q Consensus 410 ~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~l 489 (704)
......+.+|...|.+++|+|++++|++|+.||+|++||+.+++.+..+..|..+|.+++|+|++.+|++|+.||.|++
T Consensus 97 -~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 175 (312)
T 4ery_A 97 -GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 175 (312)
T ss_dssp -CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred -CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Confidence 2345667889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCceeEEec-cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEE--EEE-ecCCCEEEEE
Q 005277 490 WSMDRIQPLRIMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILS--LAM-SPDGRYMASG 565 (704)
Q Consensus 490 wd~~~~~~~~~~~-~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~--l~~-spdg~~l~sg 565 (704)
||+++++.+..+. .+...+.+++|+|++++|++++.||.|++||+++++++..+.+|...+.+ ..+ .+++.+|++|
T Consensus 176 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg 255 (312)
T 4ery_A 176 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 255 (312)
T ss_dssp EETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEEC
T ss_pred EECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEE
Confidence 9999988877664 56678999999999999999999999999999999999999888765332 233 3678999999
Q ss_pred eCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEe--C
Q 005277 566 DEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGS--A 643 (704)
Q Consensus 566 ~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs--~ 643 (704)
+.||.|++||+.+++.+..+.+|...|.+++| +|++.++++++ .
T Consensus 256 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~----------------------------------~p~~~~l~s~~~~~ 301 (312)
T 4ery_A 256 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTAC----------------------------------HPTENIIASAALEN 301 (312)
T ss_dssp CTTSCEEEEETTTCCEEEEECCCSSCEEEEEE----------------------------------CSSSSEEEEEECTT
T ss_pred CCCCEEEEEECCCchhhhhhhccCCcEEEEee----------------------------------cCcCCceEEEEccC
Confidence 99999999999999999999999999999999 99999999997 6
Q ss_pred CCcEEEEeCC
Q 005277 644 DCTVKLWDVT 653 (704)
Q Consensus 644 Dg~V~iWd~~ 653 (704)
||+|++|+.+
T Consensus 302 d~~i~~W~~d 311 (312)
T 4ery_A 302 DKTIKLWKSD 311 (312)
T ss_dssp TCCEEEEECC
T ss_pred CccEEEecCC
Confidence 9999999864
No 64
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6.3e-35 Score=361.96 Aligned_cols=320 Identities=20% Similarity=0.304 Sum_probs=273.0
Q ss_pred CeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCC
Q 005277 341 SVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH 420 (704)
Q Consensus 341 ~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 420 (704)
......+.+|.+.|+|++|+|+|++||+|+.||.|+|||+.+ ......+.+|
T Consensus 605 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~----------------------------~~~~~~~~~h 656 (1249)
T 3sfz_A 605 NLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAET----------------------------GEKLLDIKAH 656 (1249)
T ss_dssp CCCSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT----------------------------CCEEEEECCC
T ss_pred ccceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCC----------------------------CCEEEEeccC
Confidence 344556789999999999999999999999999999999875 2345667799
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcC--CCCEEEEEeCCCeEEEEECCCCcee
Q 005277 421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRTARIWSMDRIQPL 498 (704)
Q Consensus 421 ~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp--~~~~l~sgs~dg~i~lwd~~~~~~~ 498 (704)
.+.|.+++|+|++++|++|+.||+|++||+.+++.+..+.+|...|++++|+| ++.++++|+.||.|++||+++++.+
T Consensus 657 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~ 736 (1249)
T 3sfz_A 657 EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR 736 (1249)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEE
T ss_pred CCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchh
Confidence 99999999999999999999999999999999999999999999999999999 5668999999999999999999999
Q ss_pred EEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEe-----------------------------------
Q 005277 499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF----------------------------------- 543 (704)
Q Consensus 499 ~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~----------------------------------- 543 (704)
..+.+|...|.+++|+|+++++++|+.||+|++||++++.....+
T Consensus 737 ~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~ 816 (1249)
T 3sfz_A 737 NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVA 816 (1249)
T ss_dssp EEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEE
T ss_pred heecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEE
Confidence 999999999999999999999999999999999999876544332
Q ss_pred --------------------ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeee----
Q 005277 544 --------------------IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRF---- 599 (704)
Q Consensus 544 --------------------~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~---- 599 (704)
.+|...|.+++|+|+++++++|+.||.|++||+.++..+..+.+|...|.++.|..
T Consensus 817 ~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~ 896 (1249)
T 3sfz_A 817 AKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSS 896 (1249)
T ss_dssp ETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred cCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCE
Confidence 16778899999999999999999999999999999999999999999999999842
Q ss_pred -eehcccccccccccccc----------------------------------------ceeeeeeeEEeecccCCCCCEE
Q 005277 600 -LLLVTNAYLKISDKVST----------------------------------------GFLFYSLTIIYFGCASCEGSLL 638 (704)
Q Consensus 600 -~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~s~~g~~l 638 (704)
.....++.+.+|+.... .........+...+++|+++++
T Consensus 897 l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l 976 (1249)
T 3sfz_A 897 FLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYV 976 (1249)
T ss_dssp EEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEE
T ss_pred EEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEE
Confidence 22223344444442210 0000111134556779999999
Q ss_pred EEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 639 ASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 639 asgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
++|+.||.|++|++.++.. +..+..|..+|.+++|+|+|.+|++|+.||+
T Consensus 977 ~~g~~~g~i~i~d~~~~~~---------------~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~ 1026 (1249)
T 3sfz_A 977 AFGDEDGAIKIIELPNNRV---------------FSSGVGHKKAVRHIQFTADGKTLISSSEDSV 1026 (1249)
T ss_dssp EEEETTSCCEEEETTTTSC---------------EEECCCCSSCCCCEEECSSSSCEEEECSSSB
T ss_pred EEEcCCCCEEEEEcCCCce---------------eeecccCCCceEEEEECCCCCEEEEEcCCCE
Confidence 9999999999999987643 4456688999999999999999999999874
No 65
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4.6e-35 Score=307.95 Aligned_cols=275 Identities=19% Similarity=0.273 Sum_probs=240.2
Q ss_pred eCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEE
Q 005277 349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS 428 (704)
Q Consensus 349 ~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 428 (704)
-+.++|.+++|+|||++++++..++.+.+|.... ........+|.++|.+++
T Consensus 7 ~~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~h~~~v~~~~ 58 (337)
T 1gxr_A 7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPR----------------------------HARQINTLNHGEVVCAVT 58 (337)
T ss_dssp EEEEECCEEEECSSSCEEECCCCTTSSSSTTCCS----------------------------EEEEEEEECCSSCCCEEE
T ss_pred ccCCceeEEEECCCCCEEEeecCCCcEeccccCC----------------------------ccccceeccCCCceEEEE
Confidence 3456799999999999999998877765554322 112233447999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCcee---EEee--cCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCc--eeEEe
Q 005277 429 FSPLGDFILSSSADTTIRLWSTKLNANL---VCYK--GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ--PLRIM 501 (704)
Q Consensus 429 ~sp~~~~l~s~s~Dg~I~lwd~~~~~~~---~~~~--~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~--~~~~~ 501 (704)
|+|++++|++++ ||.|++|++.++... ..+. +|..+|.+++|+|+++++++++.||.|++||+++++ ....+
T Consensus 59 ~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 137 (337)
T 1gxr_A 59 ISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAEL 137 (337)
T ss_dssp ECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEE
T ss_pred EecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeec
Confidence 999999999999 999999999876543 3333 789999999999999999999999999999999877 56677
Q ss_pred ccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCee
Q 005277 502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC 581 (704)
Q Consensus 502 ~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~ 581 (704)
..|...|.+++|+|+++++++++.||.|++||+++++.+..+.+|...|.+++|+|++++|++++.||.|++||+++++.
T Consensus 138 ~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 217 (337)
T 1gxr_A 138 TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ 217 (337)
T ss_dssp ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred ccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCce
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred eeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccccc
Q 005277 582 VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKT 661 (704)
Q Consensus 582 ~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~ 661 (704)
+..+. |...+.++.| +|++.++++|+.||.|++||+.++..
T Consensus 218 ~~~~~-~~~~v~~~~~----------------------------------s~~~~~l~~~~~~~~i~~~~~~~~~~---- 258 (337)
T 1gxr_A 218 LQQHD-FTSQIFSLGY----------------------------------CPTGEWLAVGMESSNVEVLHVNKPDK---- 258 (337)
T ss_dssp EEEEE-CSSCEEEEEE----------------------------------CTTSSEEEEEETTSCEEEEETTSSCE----
T ss_pred Eeeec-CCCceEEEEE----------------------------------CCCCCEEEEEcCCCcEEEEECCCCCe----
Confidence 87764 7788999999 99999999999999999999987542
Q ss_pred ccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 662 EEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 662 ~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
..+..|..+|.+++|+|++.+|++++.||+
T Consensus 259 ------------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 288 (337)
T 1gxr_A 259 ------------YQLHLHESCVLSLKFAYCGKWFVSTGKDNL 288 (337)
T ss_dssp ------------EEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred ------------EEEcCCccceeEEEECCCCCEEEEecCCCc
Confidence 245578889999999999999999998874
No 66
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=5.1e-35 Score=307.89 Aligned_cols=253 Identities=22% Similarity=0.385 Sum_probs=222.9
Q ss_pred EeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEE
Q 005277 347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (704)
Q Consensus 347 ~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 426 (704)
+.+|.+.|+|++|+|++++||+|+.||.|+||++.... ........+.+|.++|.+
T Consensus 7 ~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~------------------------~~~~~~~~~~~~~~~v~~ 62 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDT------------------------SNWELSDSWRAHDSSIVA 62 (351)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSS------------------------CCEEEEEEEECCSSCEEE
T ss_pred CcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCC------------------------CcceecceeccCCCcEEE
Confidence 56899999999999999999999999999999987521 112345667899999999
Q ss_pred EEEcC--CCCEEEEEeCCCeEEEEeCCCC---------ceeEEeecCCcCeeEEEEcCC--CCEEEEEeCCCeEEEEECC
Q 005277 427 ASFSP--LGDFILSSSADTTIRLWSTKLN---------ANLVCYKGHNYPVWDVQFNPQ--GHYFASSSHDRTARIWSMD 493 (704)
Q Consensus 427 l~~sp--~~~~l~s~s~Dg~I~lwd~~~~---------~~~~~~~~h~~~V~~v~~sp~--~~~l~sgs~dg~i~lwd~~ 493 (704)
++|+| ++++|++|+.||+|++||+.++ ..+..+.+|..+|++++|+|+ +.++++++.||.|++||++
T Consensus 63 ~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 142 (351)
T 3f3f_A 63 IDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL 142 (351)
T ss_dssp EEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECS
T ss_pred EEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCC
Confidence 99999 6999999999999999999877 457788899999999999999 9999999999999999998
Q ss_pred CCceeEEec-------------cCCCCeeEEEEcCC---CCEEEEEECCCcEEEEeCCCCcE--EEEeecCCCCEEEEEE
Q 005277 494 RIQPLRIMA-------------GHLSDVDCVRWHIN---CNYIATGSSDKTVRLWDVSSGEC--VRIFIGHRSMILSLAM 555 (704)
Q Consensus 494 ~~~~~~~~~-------------~~~~~V~~v~~~p~---~~~l~tgs~dg~I~iwd~~~~~~--~~~~~~h~~~i~~l~~ 555 (704)
+++.+..+. .|...+.+++|+|+ +.++++++.++.+.+|+...++. +..+.+|...|++++|
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~ 222 (351)
T 3f3f_A 143 EPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISW 222 (351)
T ss_dssp STTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEE
T ss_pred ChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEE
Confidence 876543332 67889999999997 99999999999999998887765 6777899999999999
Q ss_pred ecCC----CEEEEEeCCCeEEEEeCCCC----------------------------------------------eeeeee
Q 005277 556 SPDG----RYMASGDEDGTIMMWDLASG----------------------------------------------RCVTPL 585 (704)
Q Consensus 556 spdg----~~l~sg~~dg~I~iwdl~~~----------------------------------------------~~~~~~ 585 (704)
+|++ ++|++|+.||.|++||++++ +.+..+
T Consensus 223 ~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (351)
T 3f3f_A 223 APSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH 302 (351)
T ss_dssp CCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEE
T ss_pred CCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEE
Confidence 9998 89999999999999999875 566667
Q ss_pred cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcc
Q 005277 586 MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTK 657 (704)
Q Consensus 586 ~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~ 657 (704)
.+|...|+++.| +|++++|++|+.||.|+||++.++..
T Consensus 303 ~~h~~~v~~~~~----------------------------------s~~~~~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 303 DDHNGEVWSVSW----------------------------------NLTGTILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp CTTSSCEEEEEE----------------------------------CSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred ecccccEEEEEE----------------------------------cCCCCEEEEecCCCcEEEEecCcCcc
Confidence 788888888888 99999999999999999999998754
No 67
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=6.4e-35 Score=303.61 Aligned_cols=245 Identities=22% Similarity=0.331 Sum_probs=211.8
Q ss_pred eeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC--CceeEEeecCCcCeeEEEEcC--CCCEEEEEeCCCeEEEE
Q 005277 415 TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKL--NANLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRTARIW 490 (704)
Q Consensus 415 ~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~--~~~~~~~~~h~~~V~~v~~sp--~~~~l~sgs~dg~i~lw 490 (704)
..+.+|.+.|++++|+|++++|++|+.|++|+|||+.. .+.+..+.+|..+|++++|+| ++.+|++|+.||+|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 45678999999999999999999999999999999974 367788999999999999986 48999999999999999
Q ss_pred ECCCCc--eeEEeccCCCCeeEEEEcCC--CCEEEEEECCCcEEEEeCCCCc--EEEEeecCCCCEEEEEEecC------
Q 005277 491 SMDRIQ--PLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSGE--CVRIFIGHRSMILSLAMSPD------ 558 (704)
Q Consensus 491 d~~~~~--~~~~~~~~~~~V~~v~~~p~--~~~l~tgs~dg~I~iwd~~~~~--~~~~~~~h~~~i~~l~~spd------ 558 (704)
|+++++ .+..+.+|...|.+++|+|+ +.+|++|+.|++|++||++++. ....+.+|...|.+++|+|+
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence 998763 56777889999999999997 8999999999999999998763 24567799999999999997
Q ss_pred -------CCEEEEEeCCCeEEEEeCCCCe----eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEe
Q 005277 559 -------GRYMASGDEDGTIMMWDLASGR----CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIY 627 (704)
Q Consensus 559 -------g~~l~sg~~dg~I~iwdl~~~~----~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (704)
+++|++|+.||.|++||++++. ....+.+|...|.+++|
T Consensus 163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~------------------------------ 212 (297)
T 2pm7_B 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW------------------------------ 212 (297)
T ss_dssp -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEE------------------------------
T ss_pred cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEE------------------------------
Confidence 5799999999999999998765 56788999999999999
Q ss_pred ecccCCCC---CEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 628 FGCASCEG---SLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 628 ~~~~s~~g---~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
+|++ .+|++|+.||+|+|||+........ ..+.....+...|.+++|+|+|.+||+|+.||+
T Consensus 213 ----sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~----------~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~ 277 (297)
T 2pm7_B 213 ----SPTVLLRSYMASVSQDRTCIIWTQDNEQGPWK----------KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK 277 (297)
T ss_dssp ----CCCCSSSEEEEEEETTSCEEEEEESSTTSCCE----------EEESSSSCCSSCEEEEEECSSSCCEEEEETTSC
T ss_pred ----CCCCCCceEEEEEECCCcEEEEEeCCCCCccc----------eeeeecccCCCcEEEEEECCCCCEEEEEcCCCc
Confidence 8884 8999999999999999876431100 011112456788999999999999999999985
No 68
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-34 Score=314.31 Aligned_cols=279 Identities=20% Similarity=0.275 Sum_probs=239.5
Q ss_pred EEeeCCCC--EEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC
Q 005277 346 TFINTHNG--LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (704)
Q Consensus 346 ~~~~~~~~--V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 423 (704)
...+|... +.+++|++ ..+++++.||.|++|++.+... .......|.+.
T Consensus 86 ~~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~---------------------------~~~~~~~~~~~ 136 (401)
T 4aez_A 86 DAPGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSV---------------------------SALAETDESTY 136 (401)
T ss_dssp ECTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCE---------------------------EEEEECCTTCC
T ss_pred eCCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcE---------------------------eEeeecCCCCC
Confidence 33455554 55566665 4577888999999999875211 11222348899
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECC-CCceeEEec
Q 005277 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD-RIQPLRIMA 502 (704)
Q Consensus 424 V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~-~~~~~~~~~ 502 (704)
|.+++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++| ++.++++|+.||.|++||++ ....+..+.
T Consensus 137 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 214 (401)
T 4aez_A 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQ 214 (401)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred EEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEc
Confidence 999999999999999999999999999999999999999999999999 56799999999999999998 566788888
Q ss_pred cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCC-EEEEEe--CCCeEEEEeCCCC
Q 005277 503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR-YMASGD--EDGTIMMWDLASG 579 (704)
Q Consensus 503 ~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~-~l~sg~--~dg~I~iwdl~~~ 579 (704)
+|...|.+++|+|++++|++|+.||.|++||+++++++..+.+|...|.+++|+|++. ++++|+ .||.|++||+.++
T Consensus 215 ~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~ 294 (401)
T 4aez_A 215 GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG 294 (401)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC
T ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC
Confidence 9999999999999999999999999999999999999999999999999999999764 566655 7999999999999
Q ss_pred eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEE--EeCCCcEEEEeCCCCcc
Q 005277 580 RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLAS--GSADCTVKLWDVTTSTK 657 (704)
Q Consensus 580 ~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~las--gs~Dg~V~iWd~~~~~~ 657 (704)
+.+..+. |...|.++.| ++++.++++ |+.||.|++||+.++..
T Consensus 295 ~~~~~~~-~~~~v~~~~~----------------------------------s~~~~~l~~~~g~~dg~i~v~~~~~~~~ 339 (401)
T 4aez_A 295 ARVNTVD-AGSQVTSLIW----------------------------------SPHSKEIMSTHGFPDNNLSIWSYSSSGL 339 (401)
T ss_dssp CEEEEEE-CSSCEEEEEE----------------------------------CSSSSEEEEEECTTTCEEEEEEEETTEE
T ss_pred CEEEEEe-CCCcEEEEEE----------------------------------CCCCCeEEEEeecCCCcEEEEecCCccc
Confidence 9988886 6678999999 999999998 55899999999987543
Q ss_pred ccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 658 VLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 658 ~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
.....+..|..+|.+++|+|+|.+|++|+.||+
T Consensus 340 -------------~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~ 372 (401)
T 4aez_A 340 -------------TKQVDIPAHDTRVLYSALSPDGRILSTAASDEN 372 (401)
T ss_dssp -------------EEEEEEECCSSCCCEEEECTTSSEEEEECTTSE
T ss_pred -------------eeEEEecCCCCCEEEEEECCCCCEEEEEeCCCc
Confidence 223456678899999999999999999999874
No 69
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=5e-34 Score=314.16 Aligned_cols=310 Identities=25% Similarity=0.461 Sum_probs=256.2
Q ss_pred EEeeCCCCE-EEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCe
Q 005277 346 TFINTHNGL-NCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (704)
Q Consensus 346 ~~~~~~~~V-~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 424 (704)
.+.+|.+.| +|+. ++|++|++|+.||.|++||+.+ ......+.+|.++|
T Consensus 113 ~l~~h~~~v~~~~~--~~g~~l~sg~~dg~i~vwd~~~----------------------------~~~~~~~~~h~~~v 162 (445)
T 2ovr_B 113 VLKGHDDHVITCLQ--FCGNRIVSGSDDNTLKVWSAVT----------------------------GKCLRTLVGHTGGV 162 (445)
T ss_dssp EEECSTTSCEEEEE--EETTEEEEEETTSCEEEEETTT----------------------------CCEEEECCCCSSCE
T ss_pred EecccCCCcEEEEE--EcCCEEEEEECCCcEEEEECCC----------------------------CcEEEEEcCCCCCE
Confidence 467888875 5544 5689999999999999999875 23456678999999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccC
Q 005277 425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH 504 (704)
Q Consensus 425 ~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~ 504 (704)
.+++|+ ++++++|+.||+|++||+.+++.+..+.+|...|.++.|+ +..+++|+.||+|++||+++++.+..+.+|
T Consensus 163 ~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~ 238 (445)
T 2ovr_B 163 WSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGH 238 (445)
T ss_dssp EEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECC
T ss_pred EEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCC
Confidence 999998 6799999999999999999999999999999999999995 678999999999999999999999999999
Q ss_pred CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeee
Q 005277 505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP 584 (704)
Q Consensus 505 ~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~ 584 (704)
...|.+++| +++++++|+.||.|++||+++++++..+.+|...|.+++| ++.++++|+.||.|++||+++++.+..
T Consensus 239 ~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~ 314 (445)
T 2ovr_B 239 VAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHT 314 (445)
T ss_dssp SSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred cccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEE
Confidence 999999999 7889999999999999999999999999999999999999 899999999999999999999999999
Q ss_pred ecCCCceeeeeeeeee---ehccccccccccccccceeeeee----eEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcc
Q 005277 585 LMGHTSCVWTLAYRFL---LLVTNAYLKISDKVSTGFLFYSL----TIIYFGCASCEGSLLASGSADCTVKLWDVTTSTK 657 (704)
Q Consensus 585 ~~~h~~~V~sl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~ 657 (704)
+.+|...+.++.+... ....++.+.+++........... ....+.++..++++|++|+.||.|++||+.+++.
T Consensus 315 ~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 394 (445)
T 2ovr_B 315 LTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEF 394 (445)
T ss_dssp ECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCE
T ss_pred EcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCce
Confidence 9999999998887432 22234455666543322111100 1111223344678999999999999999998765
Q ss_pred ccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 658 VLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 658 ~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
+..... .....+.++|.+++|+|++.+||+|+.||+
T Consensus 395 ~~~~~~----------~~~~~~~~~v~~~~~s~~~~~la~~~~dg~ 430 (445)
T 2ovr_B 395 IRNLVT----------LESGGSGGVVWRIRASNTKLVCAVGSRNGT 430 (445)
T ss_dssp EEEEEE----------CTTGGGTCEEEEEEECSSEEEEEEECSSSS
T ss_pred eeeeec----------cccCCCCceEEEEEecCCEEEEEEcccCCC
Confidence 422100 111457789999999999999999999986
No 70
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-34 Score=342.64 Aligned_cols=221 Identities=12% Similarity=0.172 Sum_probs=191.4
Q ss_pred EEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCe
Q 005277 345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (704)
Q Consensus 345 ~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 424 (704)
....+|.+.|+|++|+|++++||+|+.||.|+||+.... .. .....|..+|
T Consensus 11 ~~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~----------------------------~~-~~~~~~~~~V 61 (902)
T 2oaj_A 11 TNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQV----------------------------EV-VIKLEDRSAI 61 (902)
T ss_dssp EEEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTC----------------------------EE-EEECSSCCCE
T ss_pred ccccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCc----------------------------EE-EEEcCCCCCE
Confidence 345689999999999999999999999999999997541 11 1223478899
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCcee------
Q 005277 425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL------ 498 (704)
Q Consensus 425 ~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~------ 498 (704)
.+++|+| +++|++++.|++|++||+.+++.+..+. |...|++++|+|++.++++|+.||+|++||++++...
T Consensus 62 ~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~ 139 (902)
T 2oaj_A 62 KEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDN 139 (902)
T ss_dssp EEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECC
T ss_pred EEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceecc
Confidence 9999999 8899999999999999999999988886 6789999999999999999999999999999987653
Q ss_pred -----EEeccCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCcEEEEeecC------------------CCCEEEEE
Q 005277 499 -----RIMAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIFIGH------------------RSMILSLA 554 (704)
Q Consensus 499 -----~~~~~~~~~V~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h------------------~~~i~~l~ 554 (704)
..+.+|.+.|.+++|+|+ +..+++|+.||.| +||+++++++..+..| ...|.+++
T Consensus 140 ~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~ 218 (902)
T 2oaj_A 140 LQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSL 218 (902)
T ss_dssp HHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEE
T ss_pred ccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEE
Confidence 223578899999999996 5789999999999 9999999999888766 47799999
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCCeeeee--e---cC-------------CCceeeeeee
Q 005277 555 MSPDGRYMASGDEDGTIMMWDLASGRCVTP--L---MG-------------HTSCVWTLAY 597 (704)
Q Consensus 555 ~spdg~~l~sg~~dg~I~iwdl~~~~~~~~--~---~~-------------h~~~V~sl~~ 597 (704)
|+|+|++|++|+.||.|++||+++++++.. + .. |...|++++|
T Consensus 219 fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w 279 (902)
T 2oaj_A 219 YHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYW 279 (902)
T ss_dssp ECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEE
T ss_pred EcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEE
Confidence 999999999999999999999999987653 2 12 3457888888
No 71
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-34 Score=312.85 Aligned_cols=294 Identities=23% Similarity=0.349 Sum_probs=246.1
Q ss_pred cCCCCCCCCCCCCCCCCChhHHHHHHHhccCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005277 300 TVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWD 379 (704)
Q Consensus 300 ~~~~~p~~~~~~~lp~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwd 379 (704)
.+...|....+.+...+.+.....+.......+++|+.............|...|++++|+|++++|++|+.||.|++|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 162 (401)
T 4aez_A 83 RVLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYD 162 (401)
T ss_dssp EEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eeeeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEE
Confidence 33444554555555555555433333445678999988776665555555888999999999999999999999999999
Q ss_pred cccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCceeEE
Q 005277 380 MAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTK-LNANLVC 458 (704)
Q Consensus 380 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~-~~~~~~~ 458 (704)
+.. ......+.+|.+.|.+++|+ +.+|++|+.||.|++||++ ....+..
T Consensus 163 ~~~----------------------------~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~ 212 (401)
T 4aez_A 163 VES----------------------------QTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGT 212 (401)
T ss_dssp TTT----------------------------CCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred CcC----------------------------CeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeE
Confidence 875 23456677899999999995 6799999999999999999 4667888
Q ss_pred eecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCC-CEEEEEE--CCCcEEEEeCC
Q 005277 459 YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINC-NYIATGS--SDKTVRLWDVS 535 (704)
Q Consensus 459 ~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~-~~l~tgs--~dg~I~iwd~~ 535 (704)
+.+|...|.+++|+|++.+|++|+.||.|++||++++.++..+..|...|.+++|+|++ .++++|+ .|+.|++||++
T Consensus 213 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~ 292 (401)
T 4aez_A 213 LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAA 292 (401)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETT
T ss_pred EcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECC
Confidence 89999999999999999999999999999999999999999999999999999999976 5666655 79999999999
Q ss_pred CCcEEEEeecCCCCEEEEEEecCCCEEEEE--eCCCeEEEEeCCCCeeee--eecCCCceeeeeeeeeeehccccccccc
Q 005277 536 SGECVRIFIGHRSMILSLAMSPDGRYMASG--DEDGTIMMWDLASGRCVT--PLMGHTSCVWTLAYRFLLLVTNAYLKIS 611 (704)
Q Consensus 536 ~~~~~~~~~~h~~~i~~l~~spdg~~l~sg--~~dg~I~iwdl~~~~~~~--~~~~h~~~V~sl~~~~~~~~~~~~~~~~ 611 (704)
+++++..+. +...|.+++|+|+|++|+++ +.||.|++||+.++.... .+.+|...|.++.|
T Consensus 293 ~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~-------------- 357 (401)
T 4aez_A 293 TGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSAL-------------- 357 (401)
T ss_dssp TCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEE--------------
T ss_pred CCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEE--------------
Confidence 999998885 66789999999999999994 489999999999876544 46789999999999
Q ss_pred cccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccc
Q 005277 612 DKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKV 658 (704)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~ 658 (704)
+|++.+|++|+.||.|++|++.++..+
T Consensus 358 --------------------s~dg~~l~s~~~dg~i~iw~~~~~~~~ 384 (401)
T 4aez_A 358 --------------------SPDGRILSTAASDENLKFWRVYDGDHV 384 (401)
T ss_dssp --------------------CTTSSEEEEECTTSEEEEEECCC----
T ss_pred --------------------CCCCCEEEEEeCCCcEEEEECCCCccc
Confidence 999999999999999999999987654
No 72
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.4e-33 Score=304.76 Aligned_cols=296 Identities=18% Similarity=0.269 Sum_probs=238.4
Q ss_pred EEeeCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCe
Q 005277 346 TFINTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (704)
Q Consensus 346 ~~~~~~~~V~~~~fs~-dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 424 (704)
.+..|.+.|+|++|+| ++++||+|+.||.|+||++............. ..........+|.+.|
T Consensus 38 ~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~v 102 (408)
T 4a11_B 38 VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKA---------------VCSIGRDHPDVHRYSV 102 (408)
T ss_dssp ECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECE---------------EEEECTTCTTCCSSCE
T ss_pred eeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccc---------------cccccccccccCCCcE
Confidence 4567999999999999 99999999999999999998633211110000 0000011124699999
Q ss_pred EEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCC---CCEEEEEeCCCeEEEEECCCCceeEE
Q 005277 425 YSASFSP-LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ---GHYFASSSHDRTARIWSMDRIQPLRI 500 (704)
Q Consensus 425 ~~l~~sp-~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~---~~~l~sgs~dg~i~lwd~~~~~~~~~ 500 (704)
.+++|+| ++.+|++++.||.|++||+.+++....+. +...+.++.|+|. +.++++|+.||.|++||+++++.+..
T Consensus 103 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~ 181 (408)
T 4a11_B 103 ETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHI 181 (408)
T ss_dssp EEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEE
T ss_pred EEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeee
Confidence 9999999 77899999999999999999998888776 7788999999994 45999999999999999999999999
Q ss_pred eccCCCCeeEEEEcCCCC-EEEEEECCCcEEEEeCCCCc-EEEEe---------------ecCCCCEEEEEEecCCCEEE
Q 005277 501 MAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSGE-CVRIF---------------IGHRSMILSLAMSPDGRYMA 563 (704)
Q Consensus 501 ~~~~~~~V~~v~~~p~~~-~l~tgs~dg~I~iwd~~~~~-~~~~~---------------~~h~~~i~~l~~spdg~~l~ 563 (704)
+.+|...|.+++|+|+++ ++++|+.||.|++||++++. ++..+ .+|...|.+++|+|+|++|+
T Consensus 182 ~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 261 (408)
T 4a11_B 182 LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLL 261 (408)
T ss_dssp ECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEE
T ss_pred ecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEE
Confidence 999999999999999998 58999999999999998765 44444 57889999999999999999
Q ss_pred EEeCCCeEEEEeCCCCeeeeeecCCCce--eeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEE
Q 005277 564 SGDEDGTIMMWDLASGRCVTPLMGHTSC--VWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASG 641 (704)
Q Consensus 564 sg~~dg~I~iwdl~~~~~~~~~~~h~~~--V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasg 641 (704)
+++.||.|++||+.+++....+..+... ...+.+. .....+..++++
T Consensus 262 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~ 310 (408)
T 4a11_B 262 TVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFT-------------------------------VSCGCSSEFVFV 310 (408)
T ss_dssp EEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCE-------------------------------ECCSSSSCEEEE
T ss_pred EecCCCeEEEEECCCCccceeccccccccccccceeE-------------------------------EecCCCceEEEE
Confidence 9999999999999998876655443211 1111110 003345567777
Q ss_pred eCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 642 SADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 642 s~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
+.||.|++||+.++.. +..+..|..+|.+++|+|++.+|++|+.||+
T Consensus 311 ~~~~~i~v~d~~~~~~---------------~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 357 (408)
T 4a11_B 311 PYGSTIAVYTVYSGEQ---------------ITMLKGHYKTVDCCVFQSNFQELYSGSRDCN 357 (408)
T ss_dssp EETTEEEEEETTTCCE---------------EEEECCCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred ecCCEEEEEECcCCcc---------------eeeeccCCCeEEEEEEcCCCCEEEEECCCCe
Confidence 8899999999988653 5567788999999999999999999999985
No 73
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=8.5e-34 Score=301.84 Aligned_cols=285 Identities=19% Similarity=0.309 Sum_probs=239.9
Q ss_pred CCeEEEEEeeCCCCEEEEEEcCC---CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceee
Q 005277 340 PSVSFYTFINTHNGLNCASISQD---GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL 416 (704)
Q Consensus 340 p~~~~~~~~~~~~~V~~~~fs~d---g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (704)
|......+.+|.+.|+|++|+|+ |++|++|+.||.|+||++.... ......
T Consensus 28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~--------------------------~~~~~~ 81 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG--------------------------QTIPKA 81 (368)
T ss_dssp TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS--------------------------CEEEEE
T ss_pred CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC--------------------------ceeEEE
Confidence 33344457789999999999999 6999999999999999987511 223356
Q ss_pred ccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEE--cCCCCEEEEEeCCCeEEEEECCC
Q 005277 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQF--NPQGHYFASSSHDRTARIWSMDR 494 (704)
Q Consensus 417 ~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~--sp~~~~l~sgs~dg~i~lwd~~~ 494 (704)
+.+|.++|.+++|+|++++|++++.||+|++||+.+++.+. +..|..+|++++| +|++.+|++++.||.|++||+++
T Consensus 82 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 160 (368)
T 3mmy_A 82 QQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS 160 (368)
T ss_dssp EEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSC
T ss_pred eccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCC
Confidence 77899999999999999999999999999999999887665 5669999999999 89999999999999999999999
Q ss_pred CceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEe--ecCCCCEEEEEEecCCCE----EEEEeCC
Q 005277 495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF--IGHRSMILSLAMSPDGRY----MASGDED 568 (704)
Q Consensus 495 ~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~--~~h~~~i~~l~~spdg~~----l~sg~~d 568 (704)
++++..+..+. .+.++.+. +..+++++.++.+++||++........ ..+...+.++++.+++.. +++|+.|
T Consensus 161 ~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 237 (368)
T 3mmy_A 161 SNPMMVLQLPE-RCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIE 237 (368)
T ss_dssp SSCSEEEECSS-CEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETT
T ss_pred CcEEEEEecCC-CceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCC
Confidence 99998888664 56666655 458899999999999999876543332 234456777777776654 9999999
Q ss_pred CeEEEEeCCCC---eeeeeecCCCc------------eeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCC
Q 005277 569 GTIMMWDLASG---RCVTPLMGHTS------------CVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASC 633 (704)
Q Consensus 569 g~I~iwdl~~~---~~~~~~~~h~~------------~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 633 (704)
|.|++||++.. ..+..+.+|.. .|.++.| +|
T Consensus 238 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----------------------------------sp 283 (368)
T 3mmy_A 238 GRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAF----------------------------------HP 283 (368)
T ss_dssp SEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEE----------------------------------CT
T ss_pred CcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEE----------------------------------ec
Confidence 99999999987 56677777776 6889988 99
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 634 EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 634 ~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
++++|++|+.||.|++||+.++.. +..+..|..+|.+++|+|+|.+|++|+.|+.
T Consensus 284 ~~~~l~s~~~dg~i~iwd~~~~~~---------------~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~ 338 (368)
T 3mmy_A 284 VHGTLATVGSDGRFSFWDKDARTK---------------LKTSEQLDQPISACCFNHNGNIFAYASSYDW 338 (368)
T ss_dssp TTCCEEEEETTSCEEEEETTTTEE---------------EEECCCCSSCEEEEEECTTSSCEEEEECCCS
T ss_pred CCCEEEEEccCCeEEEEECCCCcE---------------EEEecCCCCCceEEEECCCCCeEEEEecccc
Confidence 999999999999999999987643 4566788999999999999999999998863
No 74
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=3.7e-34 Score=309.19 Aligned_cols=269 Identities=16% Similarity=0.261 Sum_probs=234.9
Q ss_pred cCeEeecCCCCCC-----eEEEEEeeCCCCEEEEEEcCC----C---CEEEEEeCCCcEEEEEcccCCccccccccCCCC
Q 005277 329 RNRVHLSSAALPS-----VSFYTFINTHNGLNCASISQD----G---SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGEN 396 (704)
Q Consensus 329 ~~~~~l~~~~~p~-----~~~~~~~~~~~~V~~~~fs~d----g---~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~ 396 (704)
...+++|...... ....++.+|...|++++|+|+ + ++|++|+.||.|++|++......
T Consensus 35 dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~---------- 104 (397)
T 1sq9_A 35 DGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDET---------- 104 (397)
T ss_dssp TSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTT----------
T ss_pred CCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccc----------
Confidence 3467777665443 345667799999999999999 9 99999999999999998762210
Q ss_pred CCCCcccccCCCCCccceeeccCC-----ccCeEEEEEc----CCCCE-EEEEeCCCeEEEEeCCC------CceeE---
Q 005277 397 DTTPREDIIGPNGRKRSYTLYQGH-----SGPVYSASFS----PLGDF-ILSSSADTTIRLWSTKL------NANLV--- 457 (704)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~h-----~~~V~~l~~s----p~~~~-l~s~s~Dg~I~lwd~~~------~~~~~--- 457 (704)
.......+.+| ...|.+++|+ |++++ |++++.||.|++||+.+ +..+.
T Consensus 105 -------------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 171 (397)
T 1sq9_A 105 -------------KKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSP 171 (397)
T ss_dssp -------------CCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCC
T ss_pred -------------ccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccC
Confidence 01124566677 6999999999 99999 99999999999999998 66666
Q ss_pred --Eee-------cCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc---C---CCCeeEEEEcCCCCEEEE
Q 005277 458 --CYK-------GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG---H---LSDVDCVRWHINCNYIAT 522 (704)
Q Consensus 458 --~~~-------~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~---~---~~~V~~v~~~p~~~~l~t 522 (704)
.+. .|...|++++|+|++ ++++|+.||.|++||+++++++..+.. | ...|.+++|+|++++|++
T Consensus 172 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~ 250 (397)
T 1sq9_A 172 TLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAI 250 (397)
T ss_dssp EEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEE
T ss_pred cceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEE
Confidence 674 488999999999999 999999999999999999999999998 8 999999999999999999
Q ss_pred EECC---CcEEEEeCCCCcEEEEeec-------------CCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeec
Q 005277 523 GSSD---KTVRLWDVSSGECVRIFIG-------------HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM 586 (704)
Q Consensus 523 gs~d---g~I~iwd~~~~~~~~~~~~-------------h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~ 586 (704)
++.| |.|++||+++++.+..+.+ |...|.+++|+|++++|++++.||.|++||+.+++.+..+.
T Consensus 251 ~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 251 AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN 330 (397)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred EecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence 9999 9999999999999999988 99999999999999999999999999999999999999998
Q ss_pred ------CC---------------CceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCC----------
Q 005277 587 ------GH---------------TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEG---------- 635 (704)
Q Consensus 587 ------~h---------------~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g---------- 635 (704)
+| ...|.++.| +|++
T Consensus 331 ~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~----------------------------------~~~g~~~~~~~~~~ 376 (397)
T 1sq9_A 331 MHCDDIEIEEDILAVDEHGDSLAEPGVFDVKF----------------------------------LKKGWRSGMGADLN 376 (397)
T ss_dssp CCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEE----------------------------------ECTTTSBSTTCTTS
T ss_pred cccCcccchhhhhccccccccccCCceeEEEe----------------------------------cccccccccccccc
Confidence 88 899999999 8887
Q ss_pred CEEEEEeCCCcEEEEeCCCC
Q 005277 636 SLLASGSADCTVKLWDVTTS 655 (704)
Q Consensus 636 ~~lasgs~Dg~V~iWd~~~~ 655 (704)
.+|++|+.||.|++|++.++
T Consensus 377 ~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 377 ESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp CEEEEEETTTEEEEEEEEC-
T ss_pred ceEEEecCCCcEEEEEcCCC
Confidence 79999999999999998765
No 75
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=6e-33 Score=317.23 Aligned_cols=291 Identities=20% Similarity=0.279 Sum_probs=241.5
Q ss_pred eEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCC
Q 005277 331 RVHLSSAALPSVSFYTFINTHNGLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG 409 (704)
Q Consensus 331 ~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~-~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (704)
.+.+|.. ......+.+|...|++++|+|++. ++++|+.||.|++||+..
T Consensus 143 ~v~~~d~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~--------------------------- 192 (615)
T 1pgu_A 143 VFISWDS---GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP--------------------------- 192 (615)
T ss_dssp EEEETTT---CCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTT---------------------------
T ss_pred EEEEEEC---CCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCC---------------------------
Confidence 5666762 234556788999999999999998 899999999999999765
Q ss_pred CccceeeccCCcc---CeEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeEEe-e---cCCcCeeEEEEcCCCCEEEEE
Q 005277 410 RKRSYTLYQGHSG---PVYSASFSPL-GDFILSSSADTTIRLWSTKLNANLVCY-K---GHNYPVWDVQFNPQGHYFASS 481 (704)
Q Consensus 410 ~~~~~~~~~~h~~---~V~~l~~sp~-~~~l~s~s~Dg~I~lwd~~~~~~~~~~-~---~h~~~V~~v~~sp~~~~l~sg 481 (704)
......+.+|.. .|.+++|+|+ +++|++++.||.|++||+.+++.+..+ . .|..+|.+++|+ ++.+|+++
T Consensus 193 -~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~ 270 (615)
T 1pgu_A 193 -FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATV 270 (615)
T ss_dssp -BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEE
T ss_pred -cceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEE
Confidence 344566778988 9999999999 999999999999999999999999988 6 899999999999 99999999
Q ss_pred eCCCeEEEEECCCCceeEEec---------------------------------------------cCCCCeeEEEEcCC
Q 005277 482 SHDRTARIWSMDRIQPLRIMA---------------------------------------------GHLSDVDCVRWHIN 516 (704)
Q Consensus 482 s~dg~i~lwd~~~~~~~~~~~---------------------------------------------~~~~~V~~v~~~p~ 516 (704)
+.||.|++||+++++.+..+. +|...|.+++| |+
T Consensus 271 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~ 349 (615)
T 1pgu_A 271 GADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP 349 (615)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT
T ss_pred cCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC
Confidence 999999999998665443332 23333333332 21
Q ss_pred --------------------------------------------------------------------------------
Q 005277 517 -------------------------------------------------------------------------------- 516 (704)
Q Consensus 517 -------------------------------------------------------------------------------- 516 (704)
T Consensus 350 l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 429 (615)
T 1pgu_A 350 LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDL 429 (615)
T ss_dssp TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEE
T ss_pred cEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCce
Confidence
Q ss_pred --------------------------CCEEEEEEC-CCcEEEEeCCCCcEE-EEeecCCCCEEEEEEecCCCEEEEEeCC
Q 005277 517 --------------------------CNYIATGSS-DKTVRLWDVSSGECV-RIFIGHRSMILSLAMSPDGRYMASGDED 568 (704)
Q Consensus 517 --------------------------~~~l~tgs~-dg~I~iwd~~~~~~~-~~~~~h~~~i~~l~~spdg~~l~sg~~d 568 (704)
+++|++++. |+.|++||+.++... ..+.+|...|++++|+|+|++|++|+.|
T Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d 509 (615)
T 1pgu_A 430 LILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVM 509 (615)
T ss_dssp EEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCC
Confidence 334455555 666666666555444 4556788999999999999999999999
Q ss_pred CeEEEEeCCCCeeeeeecC-CCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCC----------CCCE
Q 005277 569 GTIMMWDLASGRCVTPLMG-HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASC----------EGSL 637 (704)
Q Consensus 569 g~I~iwdl~~~~~~~~~~~-h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~----------~g~~ 637 (704)
|.|++||+.+++.+..+.+ |...|+++.| +| ++.+
T Consensus 510 g~i~iw~~~~~~~~~~~~~~h~~~v~~~~~----------------------------------sp~~~~~~~~~~~~~~ 555 (615)
T 1pgu_A 510 GKILLYDLQSREVKTSRWAFRTSKINAISW----------------------------------KPAEKGANEEEIEEDL 555 (615)
T ss_dssp SCEEEEETTTTEEEECCSCCCSSCEEEEEE----------------------------------CCCC------CCSCCE
T ss_pred CeEEEeeCCCCcceeEeecCCCCceeEEEE----------------------------------cCccccccccccCCCE
Confidence 9999999999999999988 9999999999 89 9999
Q ss_pred EEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 638 LASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 638 lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
|++|+.||.|++||+.++.. .+..+..|..+|.+++|+|++. |++|+.||+
T Consensus 556 l~~~~~dg~i~iw~~~~~~~--------------~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~ 606 (615)
T 1pgu_A 556 VATGSLDTNIFIYSVKRPMK--------------IIKALNAHKDGVNNLLWETPST-LVSSGADAC 606 (615)
T ss_dssp EEEEETTSCEEEEESSCTTC--------------CEEETTSSTTCEEEEEEEETTE-EEEEETTSC
T ss_pred EEEEcCCCcEEEEECCCCce--------------echhhhcCccceEEEEEcCCCC-eEEecCCce
Confidence 99999999999999988632 3556778999999999999999 999999985
No 76
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.4e-33 Score=309.77 Aligned_cols=274 Identities=28% Similarity=0.565 Sum_probs=241.5
Q ss_pred eeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEE
Q 005277 348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA 427 (704)
Q Consensus 348 ~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 427 (704)
.+|..+|.|+.| ++++|++|+.||.|++||+.+ ......+.+|.++|.++
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~----------------------------~~~~~~~~~h~~~v~~l 179 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNT----------------------------LECKRILTGHTGSVLCL 179 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSS----------------------------CCEEEEECCCSSCEEEE
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCC----------------------------CeEEEEEcCCCCcEEEE
Confidence 456678999987 789999999999999999875 23456678999999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCcee---EEeccC
Q 005277 428 SFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL---RIMAGH 504 (704)
Q Consensus 428 ~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~---~~~~~~ 504 (704)
+| ++++|++|+.||+|++||+.+++.+..+.+|...|.+++|+ +.++++|+.||.|++||++++... ..+.+|
T Consensus 180 ~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 255 (435)
T 1p22_A 180 QY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGH 255 (435)
T ss_dssp EC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCC
T ss_pred EE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCC
Confidence 99 68899999999999999999999999999999999999997 459999999999999999987765 677899
Q ss_pred CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeee
Q 005277 505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP 584 (704)
Q Consensus 505 ~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~ 584 (704)
...|.+++| +++++++|+.||.|++||+++++++..+.+|...|.+++| +++++++|+.||.|++||+++++++..
T Consensus 256 ~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~ 331 (435)
T 1p22_A 256 RAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRV 331 (435)
T ss_dssp SSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEE
T ss_pred CCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEE
Confidence 999999999 7889999999999999999999999999999999999999 478999999999999999999999999
Q ss_pred ecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccc
Q 005277 585 LMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEK 664 (704)
Q Consensus 585 ~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~ 664 (704)
+.+|...|.++.| ++.+|++|+.||.|++||+.++.....
T Consensus 332 ~~~h~~~v~~~~~------------------------------------~~~~l~sg~~dg~i~vwd~~~~~~~~~---- 371 (435)
T 1p22_A 332 LEGHEELVRCIRF------------------------------------DNKRIVSGAYDGKIKVWDLVAALDPRA---- 371 (435)
T ss_dssp ECCCSSCEEEEEC------------------------------------CSSEEEEEETTSCEEEEEHHHHTSTTS----
T ss_pred EeCCcCcEEEEEe------------------------------------cCCEEEEEeCCCcEEEEECCCCCCccc----
Confidence 9999999999876 578999999999999999876542110
Q ss_pred cCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 665 SGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 665 ~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
......+..+..|..+|.+++| ++.+|++|+.||+
T Consensus 372 --~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~ 406 (435)
T 1p22_A 372 --PAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDT 406 (435)
T ss_dssp --CTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSE
T ss_pred --cccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCE
Confidence 0111246677889999999999 7888999999984
No 77
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=4.1e-34 Score=306.76 Aligned_cols=284 Identities=12% Similarity=0.104 Sum_probs=223.7
Q ss_pred eCCCCEEEEEEcCCCCEEEEEeCCC-------cEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCc
Q 005277 349 NTHNGLNCASISQDGSLVAGGFSDS-------SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS 421 (704)
Q Consensus 349 ~~~~~V~~~~fs~dg~~lasg~~dg-------~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 421 (704)
+..-+|+|++|+|||++||+|+.+. .|++|++........... .......+.+|.
T Consensus 12 ~~g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~------------------~~~~~~~l~~~~ 73 (365)
T 4h5i_A 12 NVGYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQF------------------HILSEFALEDND 73 (365)
T ss_dssp ECSSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHE------------------EEEEEEECCTTS
T ss_pred CCCCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeee------------------eeeeEEEccCCC
Confidence 3456899999999999999997643 499999875322110000 011223467888
Q ss_pred cCeEEEEEcCCCCEEEEE-----------eCCCeEEEEeCCCCceeEEe---------ecCCcCeeEEEEcCCCCEEEEE
Q 005277 422 GPVYSASFSPLGDFILSS-----------SADTTIRLWSTKLNANLVCY---------KGHNYPVWDVQFNPQGHYFASS 481 (704)
Q Consensus 422 ~~V~~l~~sp~~~~l~s~-----------s~Dg~I~lwd~~~~~~~~~~---------~~h~~~V~~v~~sp~~~~l~sg 481 (704)
..|.+++++ ++.+++| +.|+++++|++........+ ..+...+.+++|+|||++++++
T Consensus 74 ~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~a 151 (365)
T 4h5i_A 74 DSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIA 151 (365)
T ss_dssp CCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEE
T ss_pred CceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEE
Confidence 899888876 5566655 45788999998765432211 1244568899999999998765
Q ss_pred e--CCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEE--eecCCCCEEEEEEec
Q 005277 482 S--HDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI--FIGHRSMILSLAMSP 557 (704)
Q Consensus 482 s--~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~--~~~h~~~i~~l~~sp 557 (704)
+ .|++|++||+.+++++..+. |...|.+++|+|+|+++++++. +.+++|+..++..+.. ..+|...|.+++|+|
T Consensus 152 s~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fsp 229 (365)
T 4h5i_A 152 SSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIA 229 (365)
T ss_dssp ESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEE
T ss_pred ECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcC
Confidence 4 78999999999999888876 7788999999999999999984 5677777777776543 346888999999999
Q ss_pred CCCEEEEEeCCC----eEEEEeCCCCee----eeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeec
Q 005277 558 DGRYMASGDEDG----TIMMWDLASGRC----VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFG 629 (704)
Q Consensus 558 dg~~l~sg~~dg----~I~iwdl~~~~~----~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (704)
+|+++++++.|+ .+++||+..+.. ...+.+|...|++++|
T Consensus 230 dg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~-------------------------------- 277 (365)
T 4h5i_A 230 DDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDV-------------------------------- 277 (365)
T ss_dssp TTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEE--------------------------------
T ss_pred CCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEE--------------------------------
Confidence 999999999887 688999877643 3466789999999999
Q ss_pred ccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccc-cCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 630 CASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKT-LPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 630 ~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
+|+|++||+|+.||+|+|||+.+++. +.. +.+|..+|++|+|||||++||+|+.|+|
T Consensus 278 --Spdg~~lasgs~D~~V~iwd~~~~~~---------------~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~t 335 (365)
T 4h5i_A 278 --DMKGELAVLASNDNSIALVKLKDLSM---------------SKIFKQAHSFAITEVTISPDSTYVASVSAANT 335 (365)
T ss_dssp --CTTSCEEEEEETTSCEEEEETTTTEE---------------EEEETTSSSSCEEEEEECTTSCEEEEEETTSE
T ss_pred --CCCCCceEEEcCCCEEEEEECCCCcE---------------EEEecCcccCCEEEEEECCCCCEEEEEeCCCe
Confidence 99999999999999999999988653 333 4679999999999999999999999986
No 78
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.2e-34 Score=304.38 Aligned_cols=244 Identities=24% Similarity=0.334 Sum_probs=205.3
Q ss_pred eeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eeEEeecCCcCeeEEEEcC--CCCEEEEEeCCCeEEEE
Q 005277 415 TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRTARIW 490 (704)
Q Consensus 415 ~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~v~~sp--~~~~l~sgs~dg~i~lw 490 (704)
..+.+|.++|++++|+|++++|++|+.|++|++||+.++. .+..+.+|..+|++++|+| ++.+|++|+.|++|++|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 3456899999999999999999999999999999998775 4677899999999999986 48999999999999999
Q ss_pred ECCCC--ceeEEeccCCCCeeEEEEcCC--CCEEEEEECCCcEEEEeCCCCcE---EEEeecCCCCEEEEEEecC-----
Q 005277 491 SMDRI--QPLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSGEC---VRIFIGHRSMILSLAMSPD----- 558 (704)
Q Consensus 491 d~~~~--~~~~~~~~~~~~V~~v~~~p~--~~~l~tgs~dg~I~iwd~~~~~~---~~~~~~h~~~i~~l~~spd----- 558 (704)
|++++ .....+.+|...|.+++|+|+ +.+|++|+.|++|++||++++.. ...+.+|...|.+++|+|+
T Consensus 87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 166 (316)
T 3bg1_A 87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGS 166 (316)
T ss_dssp CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC--
T ss_pred ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcc
Confidence 99876 356677899999999999998 88999999999999999987632 3455689999999999997
Q ss_pred ------------CCEEEEEeCCCeEEEEeCCCC---eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeee
Q 005277 559 ------------GRYMASGDEDGTIMMWDLASG---RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSL 623 (704)
Q Consensus 559 ------------g~~l~sg~~dg~I~iwdl~~~---~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (704)
+++|++|+.|+.|++||++.+ +.+..+.+|...|.+++|
T Consensus 167 ~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~-------------------------- 220 (316)
T 3bg1_A 167 LIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAW-------------------------- 220 (316)
T ss_dssp ----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEEC--------------------------
T ss_pred ccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEe--------------------------
Confidence 478999999999999999765 467788999999999999
Q ss_pred eEEeecccCCCC----CEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEee
Q 005277 624 TIIYFGCASCEG----SLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 699 (704)
Q Consensus 624 ~~~~~~~~s~~g----~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs 699 (704)
+|++ .+|++|+.||+|+||++.+..... .....+..|..+|.+++|+|++.+||+|+
T Consensus 221 --------sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~-----------~~~~~~~~~~~~v~~v~~sp~g~~las~~ 281 (316)
T 3bg1_A 221 --------APSIGLPTSTIASCSQDGRVFIWTCDDASSNT-----------WSPKLLHKFNDVVWHVSWSITANILAVSG 281 (316)
T ss_dssp --------CCCSSCSCCEEEEEETTCEEEEEECSSTTCCC-----------CBCCEEEECSSCEEEEEECTTTCCEEEEE
T ss_pred --------cCCCCCCCceEEEEcCCCeEEEEEccCccccc-----------hhhhhhhcCCCcEEEEEEcCCCCEEEEEc
Confidence 8876 899999999999999997632100 01122345678999999999999999999
Q ss_pred cCCC
Q 005277 700 LSKT 703 (704)
Q Consensus 700 ~dgt 703 (704)
.||+
T Consensus 282 ~D~~ 285 (316)
T 3bg1_A 282 GDNK 285 (316)
T ss_dssp SSSC
T ss_pred CCCe
Confidence 9985
No 79
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=3.2e-33 Score=305.57 Aligned_cols=271 Identities=22% Similarity=0.380 Sum_probs=233.3
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCC
Q 005277 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL 432 (704)
Q Consensus 353 ~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 432 (704)
.+++++||++ ++||+|. |++|+|||+.+.. ......+.+|...|++++|+|+
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~--------------------------~~~~~~~~~~~~~V~sv~fspd 158 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGD--------------------------ILQLLQMEQPGEYISSVAWIKE 158 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCC--------------------------EEEEEECCSTTCCEEEEEECTT
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCC--------------------------EEEEEEecCCCCcEEEEEECCC
Confidence 3688999986 5888886 9999999987621 1222345678899999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceeEEeccCCCCeeEE
Q 005277 433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-QPLRIMAGHLSDVDCV 511 (704)
Q Consensus 433 ~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~-~~~~~~~~~~~~V~~v 511 (704)
|++|++|+.||+|++||+.+++.+..+.+|...+.+++|+ +.++++|+.|+.+++||.... ..+..+.+|...+.++
T Consensus 159 g~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~ 236 (420)
T 4gga_A 159 GNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGL 236 (420)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEE
T ss_pred CCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeee
Confidence 9999999999999999999999999999999999988874 789999999999999999864 4567788999999999
Q ss_pred EEcCCCCEEEEEECCCcEEEEeCCCCc----EEEEeecCCCCEEEEEEecCCC-EEEE--EeCCCeEEEEeCCCCeeeee
Q 005277 512 RWHINCNYIATGSSDKTVRLWDVSSGE----CVRIFIGHRSMILSLAMSPDGR-YMAS--GDEDGTIMMWDLASGRCVTP 584 (704)
Q Consensus 512 ~~~p~~~~l~tgs~dg~I~iwd~~~~~----~~~~~~~h~~~i~~l~~spdg~-~l~s--g~~dg~I~iwdl~~~~~~~~ 584 (704)
.|+|+++++++++.|+.|++||..+++ .+.....|...|.+++|+|++. .+++ |+.|+.|++||+.+++++..
T Consensus 237 ~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~ 316 (420)
T 4gga_A 237 RWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA 316 (420)
T ss_dssp EECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEE
T ss_pred eecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccccee
Confidence 999999999999999999999998765 3566778999999999999654 5554 45799999999999999988
Q ss_pred ecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEe--CCCcEEEEeCCCCccccccc
Q 005277 585 LMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGS--ADCTVKLWDVTTSTKVLKTE 662 (704)
Q Consensus 585 ~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs--~Dg~V~iWd~~~~~~~~~~~ 662 (704)
+..|. .+.++.| +++++.+++++ .||.|+|||+.++..
T Consensus 317 ~~~~~-~v~~~~~----------------------------------~~~~~~lv~~sg~~d~~I~iwd~~~~~~----- 356 (420)
T 4gga_A 317 VDAHS-QVCSILW----------------------------------SPHYKELISGHGFAQNQLVIWKYPTMAK----- 356 (420)
T ss_dssp EECSS-CEEEEEE----------------------------------ETTTTEEEEEECTTTCCEEEEETTTCCE-----
T ss_pred ecccc-ceeeeee----------------------------------cCCCCeEEEEEecCCCEEEEEECCCCcE-----
Confidence 87654 5677778 88888887765 799999999988643
Q ss_pred cccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 663 EKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 663 ~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
+..+.+|..+|.+|+|+|+|.+||+|+.|++
T Consensus 357 ----------v~~l~gH~~~V~~l~~spdg~~l~S~s~D~t 387 (420)
T 4gga_A 357 ----------VAELKGHTSRVLSLTMSPDGATVASAAADET 387 (420)
T ss_dssp ----------EEEECCCSSCEEEEEECTTSSCEEEEETTTE
T ss_pred ----------EEEEcCCCCCEEEEEEcCCCCEEEEEecCCe
Confidence 5677889999999999999999999999985
No 80
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=3.2e-34 Score=305.10 Aligned_cols=261 Identities=22% Similarity=0.406 Sum_probs=223.5
Q ss_pred CeEeecCCCCC-CeEEEE-E--eeCCCCEEEEEEcCC----CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCc
Q 005277 330 NRVHLSSAALP-SVSFYT-F--INTHNGLNCASISQD----GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPR 401 (704)
Q Consensus 330 ~~~~l~~~~~p-~~~~~~-~--~~~~~~V~~~~fs~d----g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~ 401 (704)
..+.+|+.... ....+. + ..|...|++++|+|+ +.+|++|+.||.|++||+.+
T Consensus 44 ~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~------------------- 104 (366)
T 3k26_A 44 NRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPIT------------------- 104 (366)
T ss_dssp TEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTT-------------------
T ss_pred CEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchh-------------------
Confidence 35777765432 222222 1 226688999999999 67999999999999999875
Q ss_pred ccccCCCCCccceeeccCCccCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEe---ecCCcCeeEEEEcCCCCE
Q 005277 402 EDIIGPNGRKRSYTLYQGHSGPVYSASFSP-LGDFILSSSADTTIRLWSTKLNANLVCY---KGHNYPVWDVQFNPQGHY 477 (704)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~Dg~I~lwd~~~~~~~~~~---~~h~~~V~~v~~sp~~~~ 477 (704)
......+.+|..+|.+++|+| ++.+|++|+.||+|++||+.+++.+..+ .+|...|.+++|+|++.+
T Consensus 105 ---------~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 175 (366)
T 3k26_A 105 ---------MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEK 175 (366)
T ss_dssp ---------CCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSE
T ss_pred ---------ceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCE
Confidence 234556778999999999999 8999999999999999999999988888 689999999999999999
Q ss_pred EEEEeCCCeEEEEECCCCceeEEec----------------------------cCCCCeeEEEEcCCCCEEEEEECCCcE
Q 005277 478 FASSSHDRTARIWSMDRIQPLRIMA----------------------------GHLSDVDCVRWHINCNYIATGSSDKTV 529 (704)
Q Consensus 478 l~sgs~dg~i~lwd~~~~~~~~~~~----------------------------~~~~~V~~v~~~p~~~~l~tgs~dg~I 529 (704)
|++++.||.|++||+++++....+. +|...|.+++|+ +++|++++.||.|
T Consensus 176 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i 253 (366)
T 3k26_A 176 IMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAI 253 (366)
T ss_dssp EEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEE
T ss_pred EEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEE
Confidence 9999999999999998765443333 399999999998 7799999999999
Q ss_pred EEEeCCCCcE--------------EEEeecCCCCEEEEEEecC--CCEEEEEeCCCeEEEEeCCCCeee----eeecCC-
Q 005277 530 RLWDVSSGEC--------------VRIFIGHRSMILSLAMSPD--GRYMASGDEDGTIMMWDLASGRCV----TPLMGH- 588 (704)
Q Consensus 530 ~iwd~~~~~~--------------~~~~~~h~~~i~~l~~spd--g~~l~sg~~dg~I~iwdl~~~~~~----~~~~~h- 588 (704)
++||++++.. +..+.+|...|.+++|+|+ |++|++|+.||.|++||+.+++.. ..+.+|
T Consensus 254 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 333 (366)
T 3k26_A 254 VCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHK 333 (366)
T ss_dssp EEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTT
T ss_pred EEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccc
Confidence 9999987744 7788899999999999999 999999999999999999988643 367777
Q ss_pred -CceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCC
Q 005277 589 -TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTT 654 (704)
Q Consensus 589 -~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~ 654 (704)
...|.++.| +|++++|++|+.||.|++||+.+
T Consensus 334 ~~~~v~~~~~----------------------------------s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 334 CGAAIRQTSF----------------------------------SRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp CCSCEEEEEE----------------------------------CTTSSEEEEEETTSEEEEEEC--
T ss_pred cCCceEEEEe----------------------------------CCCCCeEEEEeCCCEEEEEEecC
Confidence 799999999 99999999999999999999853
No 81
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.9e-33 Score=324.99 Aligned_cols=262 Identities=27% Similarity=0.428 Sum_probs=223.2
Q ss_pred cCeEeecCCCCC----CeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccc
Q 005277 329 RNRVHLSSAALP----SVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDI 404 (704)
Q Consensus 329 ~~~~~l~~~~~p----~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~ 404 (704)
...+++|..... ..+...+.+|...|+|++|+|++++|++|+.||.|+|||+..
T Consensus 404 D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~---------------------- 461 (694)
T 3dm0_A 404 DKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAA---------------------- 461 (694)
T ss_dssp TSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT----------------------
T ss_pred CCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCC----------------------
Confidence 357788865332 345567889999999999999999999999999999999875
Q ss_pred cCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEe---ecCCcCeeEEEEcCCC--CEEE
Q 005277 405 IGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY---KGHNYPVWDVQFNPQG--HYFA 479 (704)
Q Consensus 405 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~---~~h~~~V~~v~~sp~~--~~l~ 479 (704)
......+.+|.+.|.+++|+|++++|++|+.|++|++||+......... .+|...|.+++|+|++ ..++
T Consensus 462 ------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~ 535 (694)
T 3dm0_A 462 ------GVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIV 535 (694)
T ss_dssp ------TEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEE
T ss_pred ------CcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEE
Confidence 2345667899999999999999999999999999999998754333322 4688899999999986 6899
Q ss_pred EEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCC
Q 005277 480 SSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG 559 (704)
Q Consensus 480 sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg 559 (704)
+|+.|++|++||+++.+....+.+|...|.+++|+|++++|++|+.||+|++||+++++++..+. +...|.+++|+|++
T Consensus 536 s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~ 614 (694)
T 3dm0_A 536 SASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCFSPNR 614 (694)
T ss_dssp EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB-CSSCEEEEEECSSS
T ss_pred EEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec-CCCcEEEEEEcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999888775 45679999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeeeeecCCCc-------------------eeeeeeeeeeehccccccccccccccceee
Q 005277 560 RYMASGDEDGTIMMWDLASGRCVTPLMGHTS-------------------CVWTLAYRFLLLVTNAYLKISDKVSTGFLF 620 (704)
Q Consensus 560 ~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~-------------------~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (704)
.+|++++ ++.|++||+.+++.+..+..+.. .++++.|
T Consensus 615 ~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------------------- 670 (694)
T 3dm0_A 615 YWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNW----------------------- 670 (694)
T ss_dssp SEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEE-----------------------
T ss_pred cEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEE-----------------------
Confidence 9888776 55699999999998887754422 1344444
Q ss_pred eeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCC
Q 005277 621 YSLTIIYFGCASCEGSLLASGSADCTVKLWDVTT 654 (704)
Q Consensus 621 ~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~ 654 (704)
+|+|++|++|+.||+|+||++..
T Consensus 671 -----------spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 671 -----------SADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp -----------CTTSSEEEEEETTSEEEEEEC--
T ss_pred -----------cCCCCEEEEEcCCCeEEEEeccC
Confidence 99999999999999999999853
No 82
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=9.9e-34 Score=300.50 Aligned_cols=266 Identities=14% Similarity=0.251 Sum_probs=227.6
Q ss_pred cCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCC---CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCccccc
Q 005277 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQD---GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII 405 (704)
Q Consensus 329 ~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~d---g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (704)
...+++|.............+|...|+|++|+|+ +.+|++|+.||.|++|++....
T Consensus 43 d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------------------- 101 (357)
T 3i2n_A 43 TGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE--------------------- 101 (357)
T ss_dssp CEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS---------------------
T ss_pred CcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC---------------------
Confidence 3578888877666655556689999999999999 7999999999999999987521
Q ss_pred CCCCCccceeeccCCccCeEEEE------EcCCCCEEEEEeCCCeEEEEeCCCCc-eeEEeecCCc----CeeEEE----
Q 005277 406 GPNGRKRSYTLYQGHSGPVYSAS------FSPLGDFILSSSADTTIRLWSTKLNA-NLVCYKGHNY----PVWDVQ---- 470 (704)
Q Consensus 406 ~~~~~~~~~~~~~~h~~~V~~l~------~sp~~~~l~s~s~Dg~I~lwd~~~~~-~~~~~~~h~~----~V~~v~---- 470 (704)
.....+.+|.+.|.++. |+|++++|++++.||+|++||+.++. .+..+..|.. .|+++.
T Consensus 102 ------~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 175 (357)
T 3i2n_A 102 ------MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNA 175 (357)
T ss_dssp ------SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECC
T ss_pred ------ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEec
Confidence 13456778999999995 57899999999999999999999887 6777766654 899998
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcC---CCCEEEEEECCCcEEEEeCCCCcEEEEee---
Q 005277 471 FNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHI---NCNYIATGSSDKTVRLWDVSSGECVRIFI--- 544 (704)
Q Consensus 471 ~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p---~~~~l~tgs~dg~I~iwd~~~~~~~~~~~--- 544 (704)
|+|++.++++++.||.|++||+++++.... ..|...|.+++|+| ++++|++|+.||.|++||+++++.+..+.
T Consensus 176 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 254 (357)
T 3i2n_A 176 YNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVS 254 (357)
T ss_dssp CC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEE
T ss_pred cCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeec
Confidence 788999999999999999999999877544 56889999999999 99999999999999999998876554444
Q ss_pred --cCCCCEEEEEEecCCC-EEEEEeCCCeEEEEeCCCC-------------------eeeeeecCCCceeeeeeeeeeeh
Q 005277 545 --GHRSMILSLAMSPDGR-YMASGDEDGTIMMWDLASG-------------------RCVTPLMGHTSCVWTLAYRFLLL 602 (704)
Q Consensus 545 --~h~~~i~~l~~spdg~-~l~sg~~dg~I~iwdl~~~-------------------~~~~~~~~h~~~V~sl~~~~~~~ 602 (704)
+|...|++++|+|+++ +|++|+.||.|++||++++ +.+..+.+|...|.+++|
T Consensus 255 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~----- 329 (357)
T 3i2n_A 255 EKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDW----- 329 (357)
T ss_dssp EECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEE-----
T ss_pred cCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEE-----
Confidence 8999999999999998 8999999999999999754 456778889999999999
Q ss_pred ccccccccccccccceeeeeeeEEeecccCCCCCEEE-EEeCCCcEEEEeCCCCc
Q 005277 603 VTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLA-SGSADCTVKLWDVTTST 656 (704)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~la-sgs~Dg~V~iWd~~~~~ 656 (704)
+|++.+|+ +|+.||.|+|||+.+..
T Consensus 330 -----------------------------s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 330 -----------------------------SPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp -----------------------------CSSSTTEEEEEETTSEEEEEEECC--
T ss_pred -----------------------------cCCCCeEEEEecCCCcEEEEECCCcc
Confidence 99999998 89999999999998753
No 83
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-34 Score=335.79 Aligned_cols=251 Identities=22% Similarity=0.383 Sum_probs=222.2
Q ss_pred EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (704)
Q Consensus 346 ~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (704)
++.+|.+.|+|++|+|+|++|++|+.||.|+||++... .......+.+|.++|+
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~--------------------------~~~~~~~l~~h~~~V~ 57 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE--------------------------THKLIDTLTGHEGPVW 57 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETT--------------------------EEEEEEEECCCSSCEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCC--------------------------CCccceeccCCcCceE
Confidence 46789999999999999999999999999999998631 1345567889999999
Q ss_pred EEEEcCC--CCEEEEEeCCCeEEEEeCCCCc--eeEEeecCCcCeeEEEEcCC--CCEEEEEeCCCeEEEEECCCC--ce
Q 005277 426 SASFSPL--GDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQ--GHYFASSSHDRTARIWSMDRI--QP 497 (704)
Q Consensus 426 ~l~~sp~--~~~l~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~v~~sp~--~~~l~sgs~dg~i~lwd~~~~--~~ 497 (704)
+++|+|+ +++|++|+.||+|++||+.++. .+..+.+|..+|++++|+|+ +.++++|+.||.|++||+++. ..
T Consensus 58 ~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~ 137 (753)
T 3jro_A 58 RVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS 137 (753)
T ss_dssp EEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCC
T ss_pred EEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcc
Confidence 9999988 8999999999999999999886 67788899999999999999 999999999999999999876 34
Q ss_pred eEEeccCCCCeeEEEEcC-------------CCCEEEEEECCCcEEEEeCCCC----cEEEEeecCCCCEEEEEEecC--
Q 005277 498 LRIMAGHLSDVDCVRWHI-------------NCNYIATGSSDKTVRLWDVSSG----ECVRIFIGHRSMILSLAMSPD-- 558 (704)
Q Consensus 498 ~~~~~~~~~~V~~v~~~p-------------~~~~l~tgs~dg~I~iwd~~~~----~~~~~~~~h~~~i~~l~~spd-- 558 (704)
...+.+|...|.+++|+| ++.++++|+.||.|++||++++ .+...+.+|...|++++|+|+
T Consensus 138 ~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~ 217 (753)
T 3jro_A 138 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL 217 (753)
T ss_dssp CEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS
T ss_pred eeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCC
Confidence 556678999999999999 5899999999999999999877 566778899999999999999
Q ss_pred -CCEEEEEeCCCeEEEEeCCCCe-----eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccC
Q 005277 559 -GRYMASGDEDGTIMMWDLASGR-----CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCAS 632 (704)
Q Consensus 559 -g~~l~sg~~dg~I~iwdl~~~~-----~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 632 (704)
|++|++|+.||.|++||+.++. .+.....|...|+++.| +
T Consensus 218 ~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~----------------------------------s 263 (753)
T 3jro_A 218 LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASW----------------------------------S 263 (753)
T ss_dssp SSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEE----------------------------------C
T ss_pred CCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEE----------------------------------c
Confidence 9999999999999999999874 34444668899999999 9
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCc
Q 005277 633 CEGSLLASGSADCTVKLWDVTTST 656 (704)
Q Consensus 633 ~~g~~lasgs~Dg~V~iWd~~~~~ 656 (704)
|+|.+|++|+.||.|++|++..+.
T Consensus 264 pdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 264 LSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp TTTCCEEEECSSSCEECCBCCSSS
T ss_pred CCCCEEEEEcCCCEEEEEecCCCC
Confidence 999999999999999999998543
No 84
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=6e-33 Score=289.71 Aligned_cols=295 Identities=24% Similarity=0.424 Sum_probs=250.2
Q ss_pred cccCcCCCCCCCCCCCCCCCCChhHHHHHHHhccCeEeecCCCCCC-eEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCc
Q 005277 296 LEANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPS-VSFYTFINTHNGLNCASISQDGSLVAGGFSDSS 374 (704)
Q Consensus 296 ~~~~~~~~~p~~~~~~~lp~~~~~~~~~~~~~~~~~~~l~~~~~p~-~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~ 374 (704)
..|..+.++|...+++|+..++|+....+...+.+.+++|+..... ...+...+|...|+|++|+|++++||+|+.||.
T Consensus 11 ~~p~rvldap~~~~d~y~~~l~WS~~~~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~ 90 (318)
T 4ggc_A 11 SLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAE 90 (318)
T ss_dssp SSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSE
T ss_pred CCCCEEeeCCCCcccccceEEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCc
Confidence 3466678889888899988888886654445567899999876544 334456678889999999999999999999999
Q ss_pred EEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-
Q 005277 375 LKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN- 453 (704)
Q Consensus 375 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~- 453 (704)
|+||++.+ ......+.+|...+.++.+. +..+++++.++.+++|+....
T Consensus 91 v~iw~~~~----------------------------~~~~~~~~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~~~ 140 (318)
T 4ggc_A 91 VQLWDVQQ----------------------------QKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAE 140 (318)
T ss_dssp EEEEETTT----------------------------TEEEEEEECCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSS
T ss_pred EEEeecCC----------------------------ceeEEEecCccceEEEeecC--CCEEEEEecCCceEeeecCCCc
Confidence 99999876 34556678899988877665 678999999999999998876
Q ss_pred ceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCc----eeEEeccCCCCeeEEEEcCCCCEE---EEEECC
Q 005277 454 ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ----PLRIMAGHLSDVDCVRWHINCNYI---ATGSSD 526 (704)
Q Consensus 454 ~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~----~~~~~~~~~~~V~~v~~~p~~~~l---~tgs~d 526 (704)
..+..+.+|...+..+.|++++.++++++.||+|++||+++++ .......+...|.++.++|++..+ ++++.+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 220 (318)
T 4ggc_A 141 HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD 220 (318)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTT
T ss_pred eeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCC
Confidence 4456788999999999999999999999999999999998754 345566788899999999976533 456788
Q ss_pred CcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEe--CCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehcc
Q 005277 527 KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD--EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVT 604 (704)
Q Consensus 527 g~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~--~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~ 604 (704)
++|++||.+.+...... .+...+..+.|+|++..+++++ .||.|++||+.+++++..+.+|.+.|++++|
T Consensus 221 ~~i~lwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~------- 292 (318)
T 4ggc_A 221 RHIRIWNVCSGACLSAV-DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTM------- 292 (318)
T ss_dssp CEEEEEETTTCCEEEEE-ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEE-------
T ss_pred CEEEEEecccccccccc-cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEE-------
Confidence 99999999988877655 5677899999999999887755 7999999999999999999999999999999
Q ss_pred ccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCC
Q 005277 605 NAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTS 655 (704)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~ 655 (704)
+|+|++|+|||.||+|+|||+...
T Consensus 293 ---------------------------spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 293 ---------------------------SPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp ---------------------------CTTSSCEEEEETTTEEEEECCSCC
T ss_pred ---------------------------cCCCCEEEEEecCCeEEEEECCCC
Confidence 999999999999999999999764
No 85
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6.3e-33 Score=344.01 Aligned_cols=346 Identities=20% Similarity=0.275 Sum_probs=262.8
Q ss_pred cCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCC
Q 005277 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (704)
Q Consensus 329 ~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (704)
...+.+|+..... +..++.+|.+.|+|++|+|+|++||+|+.||.|+|||+.+
T Consensus 636 d~~i~vw~~~~~~-~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~-------------------------- 688 (1249)
T 3sfz_A 636 DKTLQVFKAETGE-KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT-------------------------- 688 (1249)
T ss_dssp TSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--------------------------
T ss_pred CCeEEEEECCCCC-EEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC--------------------------
Confidence 3467777765443 4556778999999999999999999999999999999875
Q ss_pred CCccceeeccCCccCeEEEEEcC--CCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCe
Q 005277 409 GRKRSYTLYQGHSGPVYSASFSP--LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT 486 (704)
Q Consensus 409 ~~~~~~~~~~~h~~~V~~l~~sp--~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~ 486 (704)
......+.+|.+.|.+++|+| ++.++++|+.||+|++||+.++.++..+.+|..+|++++|+|++.++++|+.||+
T Consensus 689 --~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~ 766 (1249)
T 3sfz_A 689 --GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGT 766 (1249)
T ss_dssp --CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSE
T ss_pred --CceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCe
Confidence 245566778999999999999 4558999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCceeEEe-------------------------------------------------------ccCCCCeeEE
Q 005277 487 ARIWSMDRIQPLRIM-------------------------------------------------------AGHLSDVDCV 511 (704)
Q Consensus 487 i~lwd~~~~~~~~~~-------------------------------------------------------~~~~~~V~~v 511 (704)
|++||+.++.....+ .+|...|.++
T Consensus 767 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~ 846 (1249)
T 3sfz_A 767 LRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYC 846 (1249)
T ss_dssp EEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEE
T ss_pred EEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEE
Confidence 999998765433222 2677889999
Q ss_pred EEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeee---------
Q 005277 512 RWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV--------- 582 (704)
Q Consensus 512 ~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~--------- 582 (704)
+|+|++.++++|+.||.|++||+.++..+..+.+|...|.+++|+|+|++|++++.||.|++||+.++...
T Consensus 847 ~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~ 926 (1249)
T 3sfz_A 847 DFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEI 926 (1249)
T ss_dssp EECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEE
T ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeeccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999997532100
Q ss_pred --------------------eee--------cCCCceeeeeeeee-----eehccccccccccccccceee---eeeeEE
Q 005277 583 --------------------TPL--------MGHTSCVWTLAYRF-----LLLVTNAYLKISDKVSTGFLF---YSLTII 626 (704)
Q Consensus 583 --------------------~~~--------~~h~~~V~sl~~~~-----~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 626 (704)
... ..+...+.++.|.+ .....++.+.+++........ .....+
T Consensus 927 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v 1006 (1249)
T 3sfz_A 927 DVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAV 1006 (1249)
T ss_dssp EEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCC
T ss_pred eEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCce
Confidence 000 01123445554421 111122233333322211110 111123
Q ss_pred eecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccC-------------------------ccccccccccCCCCc
Q 005277 627 YFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSG-------------------------TNRLRSLKTLPTKST 681 (704)
Q Consensus 627 ~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~-------------------------~~~~~~l~~~~~~~~ 681 (704)
...+++|+|++|++|+.||.|++||+.++........... ......+..+..|..
T Consensus 1007 ~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~ 1086 (1249)
T 3sfz_A 1007 RHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQG 1086 (1249)
T ss_dssp CCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSS
T ss_pred EEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCC
Confidence 3445689999999999999999999987654322111000 011133455667889
Q ss_pred CeEEEEEccCCcEEEEeecCCC
Q 005277 682 PVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 682 ~V~~l~fs~~g~~La~gs~dgt 703 (704)
+|.+++|+|++.+|++|+.||+
T Consensus 1087 ~v~~~~~s~d~~~l~s~s~d~~ 1108 (1249)
T 3sfz_A 1087 TVLSCAISSDATKFSSTSADKT 1108 (1249)
T ss_dssp CCCCEEECSSSSSCEEECCSSC
T ss_pred cEEEEEECCCCCEEEEEcCCCc
Confidence 9999999999999999999875
No 86
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=6.6e-33 Score=296.15 Aligned_cols=269 Identities=17% Similarity=0.165 Sum_probs=228.8
Q ss_pred cCeEeecCCCCCC-eEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCC
Q 005277 329 RNRVHLSSAALPS-VSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP 407 (704)
Q Consensus 329 ~~~~~l~~~~~p~-~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (704)
...+++|+..... ....++.+|...|++++|+|++++|++|+.||.|++|++....
T Consensus 29 d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----------------------- 85 (372)
T 1k8k_C 29 NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT----------------------- 85 (372)
T ss_dssp SSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE-----------------------
T ss_pred CCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCe-----------------------
Confidence 4567777665443 2455677899999999999999999999999999999986521
Q ss_pred CCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce----eEEeecCCcCeeEEEEcCCCCEEEEEeC
Q 005277 408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN----LVCYKGHNYPVWDVQFNPQGHYFASSSH 483 (704)
Q Consensus 408 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~----~~~~~~h~~~V~~v~~sp~~~~l~sgs~ 483 (704)
......+.+|...|.+++|+|++++|++++.||.|++||+..+.. .....+|...|.+++|+|++.+|++|+.
T Consensus 86 ---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 162 (372)
T 1k8k_C 86 ---WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC 162 (372)
T ss_dssp ---EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred ---eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC
Confidence 112334567899999999999999999999999999999998763 2333578999999999999999999999
Q ss_pred CCeEEEEECC------------------CCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeec
Q 005277 484 DRTARIWSMD------------------RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG 545 (704)
Q Consensus 484 dg~i~lwd~~------------------~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~ 545 (704)
||.|++||++ .++.+..+.+|...|.+++|+|++++|++++.||.|++||+++++++..+..
T Consensus 163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 242 (372)
T 1k8k_C 163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS 242 (372)
T ss_dssp TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC
T ss_pred CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEcc
Confidence 9999999953 6778888889999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCC--Cee--e------------------------------------eee
Q 005277 546 HRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS--GRC--V------------------------------------TPL 585 (704)
Q Consensus 546 h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~--~~~--~------------------------------------~~~ 585 (704)
|...|.+++|+|+|++|++| .||.|++||+.+ +.. + ..+
T Consensus 243 ~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (372)
T 1k8k_C 243 ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGL 321 (372)
T ss_dssp SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCC
T ss_pred CCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccc
Confidence 99999999999999988887 899999999987 421 1 222
Q ss_pred -cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCC---CEEEEEeCCCcEEEEeCCCCcc
Q 005277 586 -MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEG---SLLASGSADCTVKLWDVTTSTK 657 (704)
Q Consensus 586 -~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g---~~lasgs~Dg~V~iWd~~~~~~ 657 (704)
.+|...|++++|. +++| .+|++|+.||.|++|++.+++.
T Consensus 322 ~~~h~~~v~~~~~~---------------------------------~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 322 DSLHKNSVSQISVL---------------------------------SGGKAKCSQFCTTGMDGGMSIWDVRSLES 364 (372)
T ss_dssp SSSSSSCEEEEEEE---------------------------------ESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred cccccCCcceeEEe---------------------------------cCCCcceeeEEEecCCCceEEEEecChhH
Confidence 3788888888761 5677 9999999999999999977543
No 87
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.2e-33 Score=306.86 Aligned_cols=276 Identities=17% Similarity=0.320 Sum_probs=232.6
Q ss_pred EEEEEEcCCCC-EEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcC-
Q 005277 354 LNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP- 431 (704)
Q Consensus 354 V~~~~fs~dg~-~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp- 431 (704)
..+++++|+.. ++++|+.||.|+||++...+.. ......+.+|.++|++++|+|
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~------------------------~~~~~~~~~h~~~V~~~~~~p~ 92 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV------------------------DKNVPLVCGHTAPVLDIAWCPH 92 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC------------------------CTTCCCBCCCSSCEEEEEECTT
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC------------------------CCCCceEecCCCCEEEEEeCCC
Confidence 44678888865 4445788999999998652111 123445778999999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC-------ceeEEeecCCcCeeEEEEcCCC-CEEEEEeCCCeEEEEECCCCceeEEe--
Q 005277 432 LGDFILSSSADTTIRLWSTKLN-------ANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRIQPLRIM-- 501 (704)
Q Consensus 432 ~~~~l~s~s~Dg~I~lwd~~~~-------~~~~~~~~h~~~V~~v~~sp~~-~~l~sgs~dg~i~lwd~~~~~~~~~~-- 501 (704)
++++|++|+.||+|++||+.++ ..+..+.+|...|++++|+|++ .+|++|+.||+|++||+++++.+..+
T Consensus 93 ~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 172 (402)
T 2aq5_A 93 NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP 172 (402)
T ss_dssp CTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECT
T ss_pred CCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEec
Confidence 8999999999999999999987 6688899999999999999998 79999999999999999999999998
Q ss_pred ccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEe-ecCCCC-EEEEEEecCCCEEEEE---eCCCeEEEEeC
Q 005277 502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF-IGHRSM-ILSLAMSPDGRYMASG---DEDGTIMMWDL 576 (704)
Q Consensus 502 ~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~-~~h~~~-i~~l~~spdg~~l~sg---~~dg~I~iwdl 576 (704)
.+|...|.+++|+|++++|++++.||.|++||+++++.+..+ .+|.+. +.+++|+|+|++|++| +.|+.|++||+
T Consensus 173 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~ 252 (402)
T 2aq5_A 173 DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDT 252 (402)
T ss_dssp TTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEET
T ss_pred CCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcC
Confidence 789999999999999999999999999999999999999988 788776 8999999999999999 79999999999
Q ss_pred CCCee-eeee-cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEE-EEeCCCcEEEEeCC
Q 005277 577 ASGRC-VTPL-MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLA-SGSADCTVKLWDVT 653 (704)
Q Consensus 577 ~~~~~-~~~~-~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~la-sgs~Dg~V~iWd~~ 653 (704)
++++. +... ..|...+.++.| +|++.+|+ +|+.||.|++||+.
T Consensus 253 ~~~~~~~~~~~~~~~~~v~~~~~----------------------------------s~~~~~l~~~g~~dg~i~i~d~~ 298 (402)
T 2aq5_A 253 KHLEEPLSLQELDTSSGVLLPFF----------------------------------DPDTNIVYLCGKGDSSIRYFEIT 298 (402)
T ss_dssp TBCSSCSEEEECCCCSSCEEEEE----------------------------------ETTTTEEEEEETTCSCEEEEEEC
T ss_pred ccccCCceEEeccCCCceeEEEE----------------------------------cCCCCEEEEEEcCCCeEEEEEec
Confidence 98764 3333 356778889988 99999986 55579999999998
Q ss_pred CCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEee
Q 005277 654 TSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 699 (704)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs 699 (704)
++.... ..+..+. +..+|.+++|+|++.++++++
T Consensus 299 ~~~~~~-----------~~l~~~~-~~~~v~~~~~sp~~~~~~s~~ 332 (402)
T 2aq5_A 299 SEAPFL-----------HYLSMFS-SKESQRGMGYMPKRGLEVNKC 332 (402)
T ss_dssp SSTTCE-----------EEEEEEC-CSSCCSEEEECCGGGSCGGGT
T ss_pred CCCcce-----------Eeecccc-cCCcccceEEecccccceecc
Confidence 865311 1233333 568999999999998877543
No 88
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.4e-32 Score=325.53 Aligned_cols=307 Identities=22% Similarity=0.325 Sum_probs=255.0
Q ss_pred CeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCC
Q 005277 330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG 409 (704)
Q Consensus 330 ~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (704)
..+.+|+.... ....++..|...|++++|+|++++||+|+.||.|+||++.+
T Consensus 35 g~v~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~--------------------------- 86 (814)
T 3mkq_A 35 GRVEIWNYETQ-VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT--------------------------- 86 (814)
T ss_dssp SEEEEEETTTT-EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT---------------------------
T ss_pred CEEEEEECCCC-ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCC---------------------------
Confidence 46788875443 34456678999999999999999999999999999999875
Q ss_pred CccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-ceeEEeecCCcCeeEEEEcC-CCCEEEEEeCCCeE
Q 005277 410 RKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN-ANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTA 487 (704)
Q Consensus 410 ~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~-~~~~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i 487 (704)
......+.+|.+.|.+++|+|++++|++++.||+|++||+.++ .....+.+|..+|.+++|+| ++..+++++.||+|
T Consensus 87 -~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v 165 (814)
T 3mkq_A 87 -GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165 (814)
T ss_dssp -CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEE
T ss_pred -CcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeE
Confidence 2345667789999999999999999999999999999999987 66778889999999999999 88999999999999
Q ss_pred EEEECCCCceeEEeccCC-CCeeEEEEcC--CCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEE
Q 005277 488 RIWSMDRIQPLRIMAGHL-SDVDCVRWHI--NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMAS 564 (704)
Q Consensus 488 ~lwd~~~~~~~~~~~~~~-~~V~~v~~~p--~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s 564 (704)
++||+.++.....+..+. ..+.+++|+| ++.+|++|+.||.|++||+++++++..+.+|...|.+++|+|+|++|++
T Consensus 166 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 245 (814)
T 3mkq_A 166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS 245 (814)
T ss_dssp EEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEE
T ss_pred EEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence 999999888877776555 8999999999 9999999999999999999999999999999999999999999999999
Q ss_pred EeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCE-EEEEeC
Q 005277 565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSL-LASGSA 643 (704)
Q Consensus 565 g~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~-lasgs~ 643 (704)
|+.||.|++||+.+++.+..+..|...+++++| +|++.. +++++.
T Consensus 246 ~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~----------------------------------~~~~~~~~~~~~~ 291 (814)
T 3mkq_A 246 GSEDGTLKIWNSSTYKVEKTLNVGLERSWCIAT----------------------------------HPTGRKNYIASGF 291 (814)
T ss_dssp EETTSCEEEEETTTCSEEEEECCSSSSEEEEEE----------------------------------CTTCGGGEEEEEE
T ss_pred EeCCCeEEEEECCCCcEEEEeecCCCcEEEEEE----------------------------------ccCCCceEEEEEe
Confidence 999999999999999999999999999999999 888763 244444
Q ss_pred CCcEEEEeCCCCcccccccccc----------------------------CccccccccccCCCCcCeEEEEEccCCcEE
Q 005277 644 DCTVKLWDVTTSTKVLKTEEKS----------------------------GTNRLRSLKTLPTKSTPVYSLQFSRRNLLF 695 (704)
Q Consensus 644 Dg~V~iWd~~~~~~~~~~~~~~----------------------------~~~~~~~l~~~~~~~~~V~~l~fs~~g~~L 695 (704)
++.+.+|++............. ..........+..+...+.+++|+|+|+++
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l 371 (814)
T 3mkq_A 292 DNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFV 371 (814)
T ss_dssp TTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEE
T ss_pred CCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEE
Confidence 6678888877654332221100 000001112234455668888888888888
Q ss_pred EEee
Q 005277 696 AAGA 699 (704)
Q Consensus 696 a~gs 699 (704)
++++
T Consensus 372 a~~~ 375 (814)
T 3mkq_A 372 TVVG 375 (814)
T ss_dssp EEEE
T ss_pred EEec
Confidence 8887
No 89
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-33 Score=315.60 Aligned_cols=309 Identities=7% Similarity=0.015 Sum_probs=225.7
Q ss_pred ccCeEeecCCCCCCe---EEEEEeeCCCCEEEEEEcCC------CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCC
Q 005277 328 LRNRVHLSSAALPSV---SFYTFINTHNGLNCASISQD------GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDT 398 (704)
Q Consensus 328 ~~~~~~l~~~~~p~~---~~~~~~~~~~~V~~~~fs~d------g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~ 398 (704)
....+++|....... ...++..|.+.|.+++|+|+ +.+||+|+.||+|+||++..........
T Consensus 181 ~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~-------- 252 (524)
T 2j04_B 181 HSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF-------- 252 (524)
T ss_dssp -CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE--------
T ss_pred CCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc--------
Confidence 455788887543322 12455677889999999997 5799999999999999987532110000
Q ss_pred CCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-eeEEeecCCcCeeEE--EEcCCC
Q 005277 399 TPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA-NLVCYKGHNYPVWDV--QFNPQG 475 (704)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~-~~~~~~~h~~~V~~v--~~sp~~ 475 (704)
. ........+.+|.+.|++++|++++ .|++|+.||+|++||+.++. ....+.+|..+|++| .|+|++
T Consensus 253 ------~---~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g 322 (524)
T 2j04_B 253 ------K---MCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFE 322 (524)
T ss_dssp ------E---CCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTS
T ss_pred ------e---eecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCC
Confidence 0 0011234577899999999999864 89999999999999999764 456688999999999 578887
Q ss_pred -CEEEEEeCCCeEEEEECCCCceeEEeccCCC--CeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEE
Q 005277 476 -HYFASSSHDRTARIWSMDRIQPLRIMAGHLS--DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILS 552 (704)
Q Consensus 476 -~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~--~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~ 552 (704)
.+|++|+.|++|+|||+++++++..+.+|.. .|.+++|+|+++.+++++.|++|++||++++.++..+.+|.+.|++
T Consensus 323 ~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~s 402 (524)
T 2j04_B 323 DTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITA 402 (524)
T ss_dssp CCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEE
T ss_pred CeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEE
Confidence 8999999999999999998887777777653 5889999999999999999999999999999998889999999999
Q ss_pred EEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecC-----CCceeeeeeeeeeeh--cccccccccccccccee----ee
Q 005277 553 LAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG-----HTSCVWTLAYRFLLL--VTNAYLKISDKVSTGFL----FY 621 (704)
Q Consensus 553 l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~-----h~~~V~sl~~~~~~~--~~~~~~~~~~~~~~~~~----~~ 621 (704)
++|+|+|++|++|+.||+|++||+..+ .+..... +...+++++|..... .......++.....+.. ..
T Consensus 403 va~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~g 481 (524)
T 2j04_B 403 IGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDA 481 (524)
T ss_dssp EECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------
T ss_pred EEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecC
Confidence 999999999999999999999998653 2222111 112466676642110 00000111100001111 11
Q ss_pred eeeEEeecccCCCC---CEEEEEeCCCcEEEEeCCCC
Q 005277 622 SLTIIYFGCASCEG---SLLASGSADCTVKLWDVTTS 655 (704)
Q Consensus 622 ~~~~~~~~~~s~~g---~~lasgs~Dg~V~iWd~~~~ 655 (704)
....+...+++|++ .++|+|+.||.|+||++...
T Consensus 482 h~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 482 HGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred CCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 12234455678885 49999999999999998753
No 90
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.4e-32 Score=314.07 Aligned_cols=271 Identities=15% Similarity=0.180 Sum_probs=231.3
Q ss_pred cCeEeecCCCCC---CeEEEEEeeCCCC-EEEEEEcC--CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcc
Q 005277 329 RNRVHLSSAALP---SVSFYTFINTHNG-LNCASISQ--DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRE 402 (704)
Q Consensus 329 ~~~~~l~~~~~p---~~~~~~~~~~~~~-V~~~~fs~--dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~ 402 (704)
...+.+|....+ ......+.+|... |+|++|+| ++++||+|+.||.|+||++........
T Consensus 38 ~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~-------------- 103 (615)
T 1pgu_A 38 GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNS-------------- 103 (615)
T ss_dssp TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTE--------------
T ss_pred CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCccccc--------------
Confidence 456778876533 1455677889999 99999999 999999999999999999864210000
Q ss_pred cccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCC----CeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCC-E
Q 005277 403 DIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSAD----TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-Y 477 (704)
Q Consensus 403 ~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D----g~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~-~ 477 (704)
........+.+|..+|.+++|+|++++|++++.+ +.|++|| .++.+..+.+|...|++++|+|++. .
T Consensus 104 ------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~ 175 (615)
T 1pgu_A 104 ------VEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMR 175 (615)
T ss_dssp ------EEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCE
T ss_pred ------ccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcE
Confidence 0123455677899999999999999999999988 7888888 5778888999999999999999998 8
Q ss_pred EEEEeCCCeEEEEECCCCceeEEeccCCC---CeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCcEEEEe-e---cCCCC
Q 005277 478 FASSSHDRTARIWSMDRIQPLRIMAGHLS---DVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIF-I---GHRSM 549 (704)
Q Consensus 478 l~sgs~dg~i~lwd~~~~~~~~~~~~~~~---~V~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~~~~~~-~---~h~~~ 549 (704)
+++++.|+.|++||+.+++.+..+.+|.. .|.+++|+|+ +++|++++.||.|++||+++++.+..+ . +|...
T Consensus 176 l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 255 (615)
T 1pgu_A 176 SMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGG 255 (615)
T ss_dssp EEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSC
T ss_pred EEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCc
Confidence 99999999999999999999999999999 9999999999 999999999999999999999999998 6 89999
Q ss_pred EEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCC----ceeeeeeeeeeehccccccccccccccceeeeeeeE
Q 005277 550 ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT----SCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTI 625 (704)
Q Consensus 550 i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~----~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (704)
|.+++|+ ++++|++++.||.|++||+.+++.+..+..+. ..+.++.|
T Consensus 256 v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 306 (615)
T 1pgu_A 256 IFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA---------------------------- 306 (615)
T ss_dssp EEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEE----------------------------
T ss_pred eEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEe----------------------------
Confidence 9999999 99999999999999999999999998887763 45556555
Q ss_pred EeecccCCCCCEEEEEeCCCcEEEEeCCCCcc
Q 005277 626 IYFGCASCEGSLLASGSADCTVKLWDVTTSTK 657 (704)
Q Consensus 626 ~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~ 657 (704)
+ ++.++++|+.||.|++||+.++..
T Consensus 307 ------~-~~~~l~~~~~~g~i~~~d~~~~~~ 331 (615)
T 1pgu_A 307 ------T-GNGRIISLSLDGTLNFYELGHDEV 331 (615)
T ss_dssp ------E-ETTEEEEEETTSCEEEEETTEEEE
T ss_pred ------C-CCCeEEEEECCCCEEEEECCCCcE
Confidence 3 677888888888888888776443
No 91
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=3.4e-32 Score=284.00 Aligned_cols=270 Identities=21% Similarity=0.367 Sum_probs=227.8
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCC
Q 005277 354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG 433 (704)
Q Consensus 354 V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~ 433 (704)
+++++||+++ +||+|. |++|+|||+.+.. ......+.+|...|++++|+|++
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~--------------------------~~~~~~~~~~~~~V~~v~~~~~~ 79 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGD--------------------------ILQLLQMEQPGEYISSVAWIKEG 79 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCC--------------------------EEEEEECCSTTCCEEEEEECTTS
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCC--------------------------EEEEEEecCCCCeEEEEEECCCC
Confidence 5789999986 788875 9999999987621 11223456788999999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceeEEeccCCCCeeEEE
Q 005277 434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-QPLRIMAGHLSDVDCVR 512 (704)
Q Consensus 434 ~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~-~~~~~~~~~~~~V~~v~ 512 (704)
++|++|+.||+|++|++.+++.+..+.+|...+.++.+ ++..+++|+.++.+++|+.... ..+..+.+|...+.++.
T Consensus 80 ~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (318)
T 4ggc_A 80 NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLR 157 (318)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEE
T ss_pred CEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEE
Confidence 99999999999999999999999999999988877655 5789999999999999999865 45677889999999999
Q ss_pred EcCCCCEEEEEECCCcEEEEeCCCCcE----EEEeecCCCCEEEEEEecCCCE---EEEEeCCCeEEEEeCCCCeeeeee
Q 005277 513 WHINCNYIATGSSDKTVRLWDVSSGEC----VRIFIGHRSMILSLAMSPDGRY---MASGDEDGTIMMWDLASGRCVTPL 585 (704)
Q Consensus 513 ~~p~~~~l~tgs~dg~I~iwd~~~~~~----~~~~~~h~~~i~~l~~spdg~~---l~sg~~dg~I~iwdl~~~~~~~~~ 585 (704)
|+++++++++++.||+|++||+++++. ......|.+.|.+++++|++.. +++++.++.|++||..........
T Consensus 158 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~ 237 (318)
T 4ggc_A 158 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV 237 (318)
T ss_dssp ECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE
T ss_pred EcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc
Confidence 999999999999999999999987653 3455678889999999997653 346678899999999888776554
Q ss_pred cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEe--CCCcEEEEeCCCCcccccccc
Q 005277 586 MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGS--ADCTVKLWDVTTSTKVLKTEE 663 (704)
Q Consensus 586 ~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs--~Dg~V~iWd~~~~~~~~~~~~ 663 (704)
. +...+..+.| ++++..+++++ .||.|+|||+.+++.
T Consensus 238 ~-~~~~v~~~~~----------------------------------~~~~~~~~~~sg~~d~~i~iwd~~~~~~------ 276 (318)
T 4ggc_A 238 D-AHSQVCSILW----------------------------------SPHYKELISGHGFAQNQLVIWKYPTMAK------ 276 (318)
T ss_dssp E-CSSCEEEEEE----------------------------------ETTTTEEEEEECTTTCCEEEEETTTCCE------
T ss_pred c-ceeeeeeeee----------------------------------cccccceEEEEEcCCCEEEEEECCCCcE------
Confidence 4 5667778888 78888776654 799999999988643
Q ss_pred ccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 664 KSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 664 ~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
+..+.+|..+|++++|+|+|.+||+|+.||+
T Consensus 277 ---------~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~ 307 (318)
T 4ggc_A 277 ---------VAELKGHTSRVLSLTMSPDGATVASAAADET 307 (318)
T ss_dssp ---------EEEECCCSSCEEEEEECTTSSCEEEEETTTE
T ss_pred ---------EEEEcCCCCCEEEEEEcCCCCEEEEEecCCe
Confidence 5677889999999999999999999999985
No 92
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-32 Score=329.23 Aligned_cols=309 Identities=14% Similarity=0.158 Sum_probs=234.3
Q ss_pred cCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCC
Q 005277 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (704)
Q Consensus 329 ~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (704)
...+++|+...... ..++ .|.+.|++++|+|++++|++|+.||.|++||+.......... +
T Consensus 78 D~~v~lWd~~~~~~-~~~~-~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i----------------~- 138 (902)
T 2oaj_A 78 KDTVYVLSLYSQKV-LTTV-FVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKL----------------D- 138 (902)
T ss_dssp TCEEEEEETTTCSE-EEEE-ECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEE----------------C-
T ss_pred cCeEEEEECCCCcE-EEEE-cCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcccccee----------------c-
Confidence 45788888765432 2333 477899999999999999999999999999987632110000 0
Q ss_pred CCccce-eeccCCccCeEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeEEeecC------------------CcCeeE
Q 005277 409 GRKRSY-TLYQGHSGPVYSASFSPL-GDFILSSSADTTIRLWSTKLNANLVCYKGH------------------NYPVWD 468 (704)
Q Consensus 409 ~~~~~~-~~~~~h~~~V~~l~~sp~-~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h------------------~~~V~~ 468 (704)
..... ..+.+|.++|.+++|+|+ +..|++|+.||+| +||+++++.+..+..| ...|++
T Consensus 139 -~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~ 216 (902)
T 2oaj_A 139 -NLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQ 216 (902)
T ss_dssp -CHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEE
T ss_pred -cccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEE
Confidence 00000 234689999999999996 4689999999999 9999999888888765 477999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCceeEE--ec---c-------------CCCCeeEE-------------------
Q 005277 469 VQFNPQGHYFASSSHDRTARIWSMDRIQPLRI--MA---G-------------HLSDVDCV------------------- 511 (704)
Q Consensus 469 v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~--~~---~-------------~~~~V~~v------------------- 511 (704)
++|+|+|.+|++|+.||+|++||+++++++.. +. . |...|.++
T Consensus 217 v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~ 296 (902)
T 2oaj_A 217 SLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKS 296 (902)
T ss_dssp EEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEEC
T ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCC
Confidence 99999999999999999999999876543321 00 0 00111111
Q ss_pred --------------------------------------------------------------------------------
Q 005277 512 -------------------------------------------------------------------------------- 511 (704)
Q Consensus 512 -------------------------------------------------------------------------------- 511 (704)
T Consensus 297 ~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l 376 (902)
T 2oaj_A 297 ISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEI 376 (902)
T ss_dssp STTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCE
T ss_pred CCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcE
Confidence
Q ss_pred -----------------------------------------------------------------EEcCCCCEEEEEECC
Q 005277 512 -----------------------------------------------------------------RWHINCNYIATGSSD 526 (704)
Q Consensus 512 -----------------------------------------------------------------~~~p~~~~l~tgs~d 526 (704)
+|+|++++|++|+.|
T Consensus 377 ~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~D 456 (902)
T 2oaj_A 377 ETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSN 456 (902)
T ss_dssp EEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETT
T ss_pred EEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCC
Confidence 224556677888888
Q ss_pred CcEEEEeCCCCcEE----EE--ee-----cCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCe---------------
Q 005277 527 KTVRLWDVSSGECV----RI--FI-----GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR--------------- 580 (704)
Q Consensus 527 g~I~iwd~~~~~~~----~~--~~-----~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~--------------- 580 (704)
++|++||+.++... .. +. +|...|.+++|+|+|++||+|+.||+|+|||+.+++
T Consensus 457 gtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~ 536 (902)
T 2oaj_A 457 GSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEM 536 (902)
T ss_dssp SEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC--------------
T ss_pred CcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccce
Confidence 88888888766421 11 11 788899999999999999999999999999998662
Q ss_pred ------------------------------eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecc
Q 005277 581 ------------------------------CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGC 630 (704)
Q Consensus 581 ------------------------------~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (704)
++..+.+|.+.|++++|
T Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svaf--------------------------------- 583 (902)
T 2oaj_A 537 NFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINN--------------------------------- 583 (902)
T ss_dssp -CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEE---------------------------------
T ss_pred eeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEe---------------------------------
Confidence 35677889999999998
Q ss_pred cCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccC-CCCcCeEEEEEc-----cCC---cEEEEeecC
Q 005277 631 ASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLP-TKSTPVYSLQFS-----RRN---LLFAAGALS 701 (704)
Q Consensus 631 ~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~V~~l~fs-----~~g---~~La~gs~d 701 (704)
||+| +||+|+.||+|+|||+.++..+.. ..+..+. +|...|++|+|+ ||| .+|++|+.|
T Consensus 584 -SpdG-~lAsgs~D~tv~lwd~~~~~~~~~----------~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D 651 (902)
T 2oaj_A 584 -SNIG-FVGIAYAAGSLMLIDRRGPAIIYM----------ENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDM 651 (902)
T ss_dssp -CBTS-EEEEEETTSEEEEEETTTTEEEEE----------EEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETT
T ss_pred -cCCc-EEEEEeCCCcEEEEECCCCeEEEE----------eehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecC
Confidence 9999 999999999999999877543211 0123454 889999999999 885 899999999
Q ss_pred CC
Q 005277 702 KT 703 (704)
Q Consensus 702 gt 703 (704)
++
T Consensus 652 ~t 653 (902)
T 2oaj_A 652 GE 653 (902)
T ss_dssp SE
T ss_pred Cc
Confidence 85
No 93
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.7e-33 Score=295.53 Aligned_cols=247 Identities=23% Similarity=0.341 Sum_probs=217.2
Q ss_pred ceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCC--CCceeEEeecCCcCeeEEEEcCC--CCEEEEEeCCCeEE
Q 005277 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTK--LNANLVCYKGHNYPVWDVQFNPQ--GHYFASSSHDRTAR 488 (704)
Q Consensus 413 ~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~--~~~~~~~~~~h~~~V~~v~~sp~--~~~l~sgs~dg~i~ 488 (704)
....+.+|.++|++++|+|++++|++|+.||+|++|++. ++..+..+.+|..+|++++|+++ +.+|++|+.||.|+
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 345677899999999999999999999999999999998 55677788999999999999987 99999999999999
Q ss_pred EEECCCCc--eeEEeccCCCCeeEEEEcCC--CCEEEEEECCCcEEEEeCCCCc--EEEEeecCCCCEEEEEEec-----
Q 005277 489 IWSMDRIQ--PLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSGE--CVRIFIGHRSMILSLAMSP----- 557 (704)
Q Consensus 489 lwd~~~~~--~~~~~~~~~~~V~~v~~~p~--~~~l~tgs~dg~I~iwd~~~~~--~~~~~~~h~~~i~~l~~sp----- 557 (704)
+||+++++ .+..+..|...|.+++|+|+ +++|++++.||.|++||++++. ....+.+|...|.+++|+|
T Consensus 83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 162 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 162 (379)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---
T ss_pred EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccc
Confidence 99999887 77788889999999999999 9999999999999999999873 4456678999999999999
Q ss_pred --------CCCEEEEEeCCCeEEEEeCCCCe----eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeE
Q 005277 558 --------DGRYMASGDEDGTIMMWDLASGR----CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTI 625 (704)
Q Consensus 558 --------dg~~l~sg~~dg~I~iwdl~~~~----~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (704)
++.+|++|+.||.|++||++++. .+..+.+|...|.++.|
T Consensus 163 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~---------------------------- 214 (379)
T 3jrp_A 163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW---------------------------- 214 (379)
T ss_dssp -------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEE----------------------------
T ss_pred cccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEE----------------------------
Confidence 69999999999999999998764 45677899999999999
Q ss_pred EeecccCCC---CCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277 626 IYFGCASCE---GSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 702 (704)
Q Consensus 626 ~~~~~~s~~---g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg 702 (704)
+|+ +.+|++|+.||.|++||+.++..... ..+.....+..+|.+++|+|++.+|++|+.||
T Consensus 215 ------sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----------~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg 278 (379)
T 3jrp_A 215 ------SPTVLLRSYLASVSQDRTCIIWTQDNEQGPWK----------KTLLKEEKFPDVLWRASWSLSGNVLALSGGDN 278 (379)
T ss_dssp ------CCCCSSSEEEEEEETTSCEEEEEESSTTSCCE----------EEESSSSCCSSCEEEEEECSSSCCEEEEESSS
T ss_pred ------CCCCCCCCeEEEEeCCCEEEEEeCCCCCccce----------eeeeccccCCCcEEEEEEcCCCCEEEEecCCC
Confidence 999 89999999999999999988642211 12334455788999999999999999999987
Q ss_pred C
Q 005277 703 T 703 (704)
Q Consensus 703 t 703 (704)
+
T Consensus 279 ~ 279 (379)
T 3jrp_A 279 K 279 (379)
T ss_dssp S
T ss_pred c
Confidence 4
No 94
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.5e-32 Score=286.45 Aligned_cols=263 Identities=16% Similarity=0.228 Sum_probs=233.8
Q ss_pred CeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCC
Q 005277 330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG 409 (704)
Q Consensus 330 ~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (704)
..+.+|+.... ....++..|...|.+++|+|++++|++|+.||.|++||+...
T Consensus 54 g~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-------------------------- 106 (369)
T 3zwl_B 54 SSASVWYSLNG-ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNG-------------------------- 106 (369)
T ss_dssp SCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC--------------------------
T ss_pred CEEEEEeCCCc-hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--------------------------
Confidence 46778865443 334567789999999999999999999999999999998752
Q ss_pred CccceeeccCCccCeEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCc-----------eeEEeecCCc--CeeEEEE
Q 005277 410 RKRSYTLYQGHSGPVYSASFSPLGDFILSSSAD-----TTIRLWSTKLNA-----------NLVCYKGHNY--PVWDVQF 471 (704)
Q Consensus 410 ~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D-----g~I~lwd~~~~~-----------~~~~~~~h~~--~V~~v~~ 471 (704)
.....+. |..+|.+++|+|+++++++++.+ |.|++||+.... ....+..|.. .+.+++|
T Consensus 107 --~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (369)
T 3zwl_B 107 --QCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGW 183 (369)
T ss_dssp --CEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEE
T ss_pred --cEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEE
Confidence 2223333 78899999999999999999999 999999998654 3445556666 8999999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCC-CceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCE
Q 005277 472 NPQGHYFASSSHDRTARIWSMDR-IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMI 550 (704)
Q Consensus 472 sp~~~~l~sgs~dg~i~lwd~~~-~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i 550 (704)
+|+++++++++.||.|++||+++ ...+..+..|...|.+++|+|++++|++++.||.|++||+++++.+..+. +...+
T Consensus 184 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~ 262 (369)
T 3zwl_B 184 STKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPL 262 (369)
T ss_dssp CGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCE
T ss_pred cCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCc
Confidence 99999999999999999999998 78888899999999999999999999999999999999999999998886 77889
Q ss_pred EEEEEecCCCEEEEEeCCC--------------eEEEEeCCCCeeeeeecCCCceeeeeeeeeeehcccccccccccccc
Q 005277 551 LSLAMSPDGRYMASGDEDG--------------TIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVST 616 (704)
Q Consensus 551 ~~l~~spdg~~l~sg~~dg--------------~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~ 616 (704)
.+++|+|+++++++++.++ .+++||+.+++.+..+.+|...|.++.|
T Consensus 263 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~------------------- 323 (369)
T 3zwl_B 263 NTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAI------------------- 323 (369)
T ss_dssp EEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEE-------------------
T ss_pred eeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEE-------------------
Confidence 9999999999999999988 8999999999999999999999999999
Q ss_pred ceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcc
Q 005277 617 GFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTK 657 (704)
Q Consensus 617 ~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~ 657 (704)
+|++++|++|+.||.|+||++..+..
T Consensus 324 ---------------s~~~~~l~s~~~dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 324 ---------------SPQGTSYASGGEDGFIRLHHFEKSYF 349 (369)
T ss_dssp ---------------CTTSSEEEEEETTSEEEEEEECHHHH
T ss_pred ---------------CCCCCEEEEEcCCCeEEEEECccccc
Confidence 99999999999999999999987543
No 95
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.1e-32 Score=296.85 Aligned_cols=261 Identities=16% Similarity=0.189 Sum_probs=218.6
Q ss_pred cCeEeecCCCCCCeE-EEEEeeCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccC
Q 005277 329 RNRVHLSSAALPSVS-FYTFINTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG 406 (704)
Q Consensus 329 ~~~~~l~~~~~p~~~-~~~~~~~~~~V~~~~fs~-dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (704)
...+++|+....... .+...+|...|.+++|+| ++++|++|+.||.|++||+....
T Consensus 95 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~---------------------- 152 (383)
T 3ei3_B 95 GGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSV---------------------- 152 (383)
T ss_dssp TSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCE----------------------
T ss_pred CCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCc----------------------
Confidence 357788877654433 333347999999999999 78999999999999999987411
Q ss_pred CCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCC-EEEEEeCCC
Q 005277 407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-YFASSSHDR 485 (704)
Q Consensus 407 ~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~-~l~sgs~dg 485 (704)
........+|...|.+++|+|++++|++|+.||.|++||+ +++.+..+.+|...|.+++|+|++. ++++|+.|+
T Consensus 153 ----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~ 227 (383)
T 3ei3_B 153 ----IQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDA 227 (383)
T ss_dssp ----EEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTS
T ss_pred ----eEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCC
Confidence 1122223456689999999999999999999999999999 5788899999999999999999998 999999999
Q ss_pred eEEEEECCC----CceeEEeccCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCCcEEEEeecCC-------------
Q 005277 486 TARIWSMDR----IQPLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIGHR------------- 547 (704)
Q Consensus 486 ~i~lwd~~~----~~~~~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~------------- 547 (704)
+|++||+++ ...+..+ +|...|.+++|+| ++++|++++.|+.|++||+++++.+..+.+|.
T Consensus 228 ~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (383)
T 3ei3_B 228 TVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKAT 306 (383)
T ss_dssp EEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCE
T ss_pred EEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEe
Confidence 999999987 5566666 6999999999999 99999999999999999999988776666543
Q ss_pred ----CCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecC--CCceeeeeeeeeeehccccccccccccccceeee
Q 005277 548 ----SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG--HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFY 621 (704)
Q Consensus 548 ----~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~--h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (704)
+.+..++|+|+|++ +|+.||.|++||+.+++.+..+.+ |...+..++|
T Consensus 307 ~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~------------------------ 360 (383)
T 3ei3_B 307 WHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKF------------------------ 360 (383)
T ss_dssp ECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEE------------------------
T ss_pred ccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEE------------------------
Confidence 34445667777766 778999999999999999999987 4567777789
Q ss_pred eeeEEeecccCCCCCEEEEEeCCCcEEEEeCCC
Q 005277 622 SLTIIYFGCASCEGSLLASGSADCTVKLWDVTT 654 (704)
Q Consensus 622 ~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~ 654 (704)
+|++.+|++|+ ||.|+|||+.+
T Consensus 361 ----------s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 361 ----------SPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp ----------CTTSSEEEEEE-TTEEEEEECC-
T ss_pred ----------ecCccEEEEec-CCcEEEEecCC
Confidence 99999999997 99999999875
No 96
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=2.2e-32 Score=299.92 Aligned_cols=264 Identities=25% Similarity=0.440 Sum_probs=227.3
Q ss_pred CCeEEEEEeeCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeecc
Q 005277 340 PSVSFYTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ 418 (704)
Q Consensus 340 p~~~~~~~~~~~~~V~~~~fs~d-g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (704)
|.........|.+.|++++|+|+ +.+||+|+.||.|+||++........ ..........+.
T Consensus 117 ~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~------------------~~~~~~~~~~~~ 178 (430)
T 2xyi_A 117 GKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE------------------PSGECQPDLRLR 178 (430)
T ss_dssp -CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC------------------TTCCCCCSEEEE
T ss_pred CceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC------------------ccccCCCcEEec
Confidence 34445567889999999999997 78999999999999999975211100 111234556678
Q ss_pred CCccCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCce-------eEEeecCCcCeeEEEEcC-CCCEEEEEeCCCeEEE
Q 005277 419 GHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNAN-------LVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARI 489 (704)
Q Consensus 419 ~h~~~V~~l~~sp~~~-~l~s~s~Dg~I~lwd~~~~~~-------~~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~l 489 (704)
+|.+.|++++|+|++. +|++|+.||+|++|++..+.. ...+.+|...|.+++|+| ++.+|++++.||.|++
T Consensus 179 ~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i 258 (430)
T 2xyi_A 179 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMI 258 (430)
T ss_dssp CCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred CCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEE
Confidence 9999999999999998 999999999999999987432 456778999999999999 7889999999999999
Q ss_pred EECCCC---ceeEEeccCCCCeeEEEEcCCCC-EEEEEECCCcEEEEeCCC-CcEEEEeecCCCCEEEEEEecCCC-EEE
Q 005277 490 WSMDRI---QPLRIMAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSS-GECVRIFIGHRSMILSLAMSPDGR-YMA 563 (704)
Q Consensus 490 wd~~~~---~~~~~~~~~~~~V~~v~~~p~~~-~l~tgs~dg~I~iwd~~~-~~~~~~~~~h~~~i~~l~~spdg~-~l~ 563 (704)
||+++. .++..+..|...|.+++|+|++. ++++|+.||.|++||+++ +.++..+.+|...|.+++|+|+++ +|+
T Consensus 259 ~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~ 338 (430)
T 2xyi_A 259 WDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA 338 (430)
T ss_dssp EETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEE
T ss_pred EECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEE
Confidence 999986 57788889999999999999887 688999999999999998 567888999999999999999985 799
Q ss_pred EEeCCCeEEEEeCCC--------------CeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeec
Q 005277 564 SGDEDGTIMMWDLAS--------------GRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFG 629 (704)
Q Consensus 564 sg~~dg~I~iwdl~~--------------~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (704)
+++.||.|+|||+.. ...+..+.+|...|.++.|
T Consensus 339 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-------------------------------- 386 (430)
T 2xyi_A 339 SSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW-------------------------------- 386 (430)
T ss_dssp EEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEE--------------------------------
T ss_pred EEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEE--------------------------------
Confidence 999999999999987 3567778899999999999
Q ss_pred ccCCCCC-EEEEEeCCCcEEEEeCCCC
Q 005277 630 CASCEGS-LLASGSADCTVKLWDVTTS 655 (704)
Q Consensus 630 ~~s~~g~-~lasgs~Dg~V~iWd~~~~ 655 (704)
+|++. +|++++.||.|+||++...
T Consensus 387 --~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 387 --NPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp --CSSSTTEEEEEETTSEEEEEEECHH
T ss_pred --CCCCCCEEEEEECCCCEEEeEcccc
Confidence 99998 8999999999999998753
No 97
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.5e-31 Score=281.97 Aligned_cols=263 Identities=25% Similarity=0.407 Sum_probs=226.4
Q ss_pred CeEeecCCCC----CCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCccccc
Q 005277 330 NRVHLSSAAL----PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII 405 (704)
Q Consensus 330 ~~~~l~~~~~----p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (704)
..+++|+... ...+..++.+|...|.+++|+|++++|++|+.||.|++|+...
T Consensus 61 ~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~----------------------- 117 (340)
T 4aow_A 61 KTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTT----------------------- 117 (340)
T ss_dssp SCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-----------------------
T ss_pred CeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecc-----------------------
Confidence 4678886533 2345667888999999999999999999999999999999875
Q ss_pred CCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee-EEeecCCcCeeEEEEcCCC--CEEEEEe
Q 005277 406 GPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL-VCYKGHNYPVWDVQFNPQG--HYFASSS 482 (704)
Q Consensus 406 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~-~~~~~h~~~V~~v~~sp~~--~~l~sgs 482 (704)
.........+...+..+.+++++.+|++|+.|+.+++||+...... ....+|...+..++|++++ .++++++
T Consensus 118 -----~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~ 192 (340)
T 4aow_A 118 -----GTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG 192 (340)
T ss_dssp -----TEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEE
T ss_pred -----cceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEc
Confidence 2233445567788999999999999999999999999999865443 4456789999999999854 5789999
Q ss_pred CCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEE
Q 005277 483 HDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYM 562 (704)
Q Consensus 483 ~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l 562 (704)
.|+.|++||+++++.+..+.+|...|.+++|+|++++|++|+.||.|++||+++++++..+..+ ..|.+++|+|++.++
T Consensus 193 ~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~ 271 (340)
T 4aow_A 193 WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRYWL 271 (340)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEEECSSSSEE
T ss_pred CCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeeecCCCCcee
Confidence 9999999999999999999999999999999999999999999999999999999999888654 679999999988655
Q ss_pred EEEeCCCeEEEEeCCCCeeeeee---------cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCC
Q 005277 563 ASGDEDGTIMMWDLASGRCVTPL---------MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASC 633 (704)
Q Consensus 563 ~sg~~dg~I~iwdl~~~~~~~~~---------~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 633 (704)
+++.|+.|++||++++..+..+ .+|...|++++| +|
T Consensus 272 -~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~----------------------------------s~ 316 (340)
T 4aow_A 272 -CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAW----------------------------------SA 316 (340)
T ss_dssp -EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEE----------------------------------CT
T ss_pred -eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEE----------------------------------CC
Confidence 5667999999999988776655 367889999999 99
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCc
Q 005277 634 EGSLLASGSADCTVKLWDVTTST 656 (704)
Q Consensus 634 ~g~~lasgs~Dg~V~iWd~~~~~ 656 (704)
+|++|++|+.||.|+|||+.+|+
T Consensus 317 dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 317 DGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp TSSEEEEEETTSCEEEEEEEC--
T ss_pred CCCEEEEEeCCCEEEEEeCCCcC
Confidence 99999999999999999998875
No 98
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-32 Score=301.20 Aligned_cols=301 Identities=13% Similarity=0.090 Sum_probs=227.7
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCC---ccccccccCC-----CC--CCCCcccccC--C------------
Q 005277 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLG---QQAVSSGLQG-----EN--DTTPREDIIG--P------------ 407 (704)
Q Consensus 352 ~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~---~~~~~~~~~~-----~~--~~~~~~~~~~--~------------ 407 (704)
.++.|++|++||++|+++ .++.|++||+.+.. .......... .. .......... .
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 478999999999976666 58899999987755 2111110000 00 0000000000 0
Q ss_pred -----CCCccceeeccCCccCeEEEEEcCCCCEE-EEEeCCCeEEEEeCC--CCceeEEee--cCCcCeeEEEEcCCCCE
Q 005277 408 -----NGRKRSYTLYQGHSGPVYSASFSPLGDFI-LSSSADTTIRLWSTK--LNANLVCYK--GHNYPVWDVQFNPQGHY 477 (704)
Q Consensus 408 -----~~~~~~~~~~~~h~~~V~~l~~sp~~~~l-~s~s~Dg~I~lwd~~--~~~~~~~~~--~h~~~V~~v~~sp~~~~ 477 (704)
...........+|.+.|.+++|+|++++| ++|+.||+|++||+. ++..+..+. .|...|++++|+|++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 163 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT 163 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence 00000111234678899999999999996 899999999999999 888888776 56789999999999999
Q ss_pred EEEEeCCCeEEEEECCCCceeE----EeccCCCCeeEEEEcCC---CCEEEEEECCCcEEEEeCCCCcEEEE-eecCCCC
Q 005277 478 FASSSHDRTARIWSMDRIQPLR----IMAGHLSDVDCVRWHIN---CNYIATGSSDKTVRLWDVSSGECVRI-FIGHRSM 549 (704)
Q Consensus 478 l~sgs~dg~i~lwd~~~~~~~~----~~~~~~~~V~~v~~~p~---~~~l~tgs~dg~I~iwd~~~~~~~~~-~~~h~~~ 549 (704)
|++|+.+|.+++|++.+..... .+.+|...|.+++|+|+ +++|++|+.|+.|++||+++++++.. +.+|...
T Consensus 164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~ 243 (450)
T 2vdu_B 164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHF 243 (450)
T ss_dssp EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSC
T ss_pred EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCc
Confidence 9999999999999998876543 67789999999999999 99999999999999999999998877 5589999
Q ss_pred EEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCC-------------------------ceeeeeeeeeeehcc
Q 005277 550 ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT-------------------------SCVWTLAYRFLLLVT 604 (704)
Q Consensus 550 i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~-------------------------~~V~sl~~~~~~~~~ 604 (704)
|.+++|+ +|++|++|+.||.|++||+.+++++..+..+. ..|.++.|
T Consensus 244 v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~------- 315 (450)
T 2vdu_B 244 VSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIK------- 315 (450)
T ss_dssp EEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEE-------
T ss_pred eEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEE-------
Confidence 9999999 99999999999999999999999887775332 23334444
Q ss_pred ccccccccccccceeeeeeeEEeecccCCCCCEEEEEe-CCCcEEEEeC--CCCccccccccccCccccccccccCCCCc
Q 005277 605 NAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGS-ADCTVKLWDV--TTSTKVLKTEEKSGTNRLRSLKTLPTKST 681 (704)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs-~Dg~V~iWd~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 681 (704)
+|++++|++++ .|+.|+||++ ..+.. +..+..+..+ .
T Consensus 316 ---------------------------~~~~~~l~~~~~~d~~i~iw~~~~~~~~~------------l~~~~~~~~~-~ 355 (450)
T 2vdu_B 316 ---------------------------SKNLPFVAFFVEATKCIIILEMSEKQKGD------------LALKQIITFP-Y 355 (450)
T ss_dssp ---------------------------CSSSSEEEEEETTCSEEEEEEECSSSTTC------------EEEEEEEECS-S
T ss_pred ---------------------------eCCCCEEEEEECCCCeEEEEEeccCCCCc------------eeeccEeccC-C
Confidence 89999999999 8999999999 33321 1234455555 7
Q ss_pred CeEEEEEccCCcEEEEeecC
Q 005277 682 PVYSLQFSRRNLLFAAGALS 701 (704)
Q Consensus 682 ~V~~l~fs~~g~~La~gs~d 701 (704)
+|.+++|+|++.++++++.+
T Consensus 356 ~v~~~~~~~~~~~v~~~~~~ 375 (450)
T 2vdu_B 356 NVISLSAHNDEFQVTLDNKE 375 (450)
T ss_dssp CEEEEEEETTEEEEEECCTT
T ss_pred ceEEEEecCCcEEEEEeccc
Confidence 89999999977666665543
No 99
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-31 Score=278.77 Aligned_cols=259 Identities=22% Similarity=0.357 Sum_probs=229.0
Q ss_pred CeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCC
Q 005277 330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG 409 (704)
Q Consensus 330 ~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (704)
..+++|+.... .....+..|...|.+++|+|++++|++|+.||.|++|++....
T Consensus 39 g~v~vw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~------------------------- 92 (313)
T 3odt_A 39 GTVRLWSKDDQ-WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATS------------------------- 92 (313)
T ss_dssp SEEEEEEESSS-EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCT-------------------------
T ss_pred CcEEEEECCCC-EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecC-------------------------
Confidence 46778876433 3445677889999999999999999999999999999987521
Q ss_pred CccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcC-CCCEEEEEeCCCeEE
Q 005277 410 RKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTAR 488 (704)
Q Consensus 410 ~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~ 488 (704)
.......+.+|...|.+++| ++++|++++.||.|++|| .+.....+..|..+|.++.|+| ++.++++++.||.++
T Consensus 93 ~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~ 168 (313)
T 3odt_A 93 GEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIK 168 (313)
T ss_dssp TSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEE
T ss_pred CCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEE
Confidence 12334556789999999999 578999999999999999 6788888999999999999998 999999999999999
Q ss_pred EEECCCCceeEEecc-CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeC
Q 005277 489 IWSMDRIQPLRIMAG-HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE 567 (704)
Q Consensus 489 lwd~~~~~~~~~~~~-~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~ 567 (704)
+|| ..+....+.. |...|.+++|+|++. +++|+.||.|++||+++++.+..+.+|...|++++|+|+| .|++++.
T Consensus 169 i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~ 244 (313)
T 3odt_A 169 LWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGE 244 (313)
T ss_dssp EEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEET
T ss_pred EEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEec
Confidence 999 4556777776 899999999999998 9999999999999999999999999999999999999999 5889999
Q ss_pred CCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcE
Q 005277 568 DGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTV 647 (704)
Q Consensus 568 dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V 647 (704)
||.|++||+.+++.+..+..|...|.++.| +|++. +++|+.||.|
T Consensus 245 dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~----------------------------------~~~~~-~~~~~~dg~i 289 (313)
T 3odt_A 245 DRTVRIWSKENGSLKQVITLPAISIWSVDC----------------------------------MSNGD-IIVGSSDNLV 289 (313)
T ss_dssp TSEEEEECTTTCCEEEEEECSSSCEEEEEE----------------------------------CTTSC-EEEEETTSCE
T ss_pred CCEEEEEECCCCceeEEEeccCceEEEEEE----------------------------------ccCCC-EEEEeCCCcE
Confidence 999999999999999999999999999999 99998 6679999999
Q ss_pred EEEeCCCCcc
Q 005277 648 KLWDVTTSTK 657 (704)
Q Consensus 648 ~iWd~~~~~~ 657 (704)
++||+.++..
T Consensus 290 ~iw~~~~~~~ 299 (313)
T 3odt_A 290 RIFSQEKSRW 299 (313)
T ss_dssp EEEESCGGGC
T ss_pred EEEeCCCCce
Confidence 9999987654
No 100
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.1e-34 Score=305.60 Aligned_cols=239 Identities=20% Similarity=0.261 Sum_probs=206.4
Q ss_pred cCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--ceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 005277 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN--ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI 495 (704)
Q Consensus 418 ~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~--~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~ 495 (704)
..|.++|++++|+|++++|++|+.||+|++||+.++ ..+..+.+|..+|++++|+|++++|++|+.||+|++||+.++
T Consensus 8 ~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~ 87 (377)
T 3dwl_C 8 HILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPD 87 (377)
T ss_dssp EECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-----
T ss_pred ecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Confidence 346789999999999999999999999999999988 778889999999999999999999999999999999999987
Q ss_pred c---eeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCc---EEEEeec-CCCCEEEEEEecCCCEEEEEeCC
Q 005277 496 Q---PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE---CVRIFIG-HRSMILSLAMSPDGRYMASGDED 568 (704)
Q Consensus 496 ~---~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~---~~~~~~~-h~~~i~~l~~spdg~~l~sg~~d 568 (704)
. +...+.+|...|.+++|+|++++|++|+.|+.|++||+++++ ....+.+ |...|.+++|+|++++|++|+.|
T Consensus 88 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d 167 (377)
T 3dwl_C 88 GTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCAD 167 (377)
T ss_dssp -CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESS
T ss_pred CceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCC
Confidence 6 677788899999999999999999999999999999999887 4677777 99999999999999999999999
Q ss_pred CeEEEEeCC------------------CCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecc
Q 005277 569 GTIMMWDLA------------------SGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGC 630 (704)
Q Consensus 569 g~I~iwdl~------------------~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (704)
|.|++||+. .++++..+ +|...|.++.|
T Consensus 168 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~--------------------------------- 213 (377)
T 3dwl_C 168 RKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGF--------------------------------- 213 (377)
T ss_dssp SCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEE---------------------------------
T ss_pred CEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEE---------------------------------
Confidence 999999985 35566667 89999999999
Q ss_pred cCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277 631 ASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 702 (704)
Q Consensus 631 ~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg 702 (704)
+|++++|++|+.||.|++||+.++... ...+..+..|..+|.+++|+|+|.+|++|+.++
T Consensus 214 -sp~~~~l~~~~~d~~i~iwd~~~~~~~-----------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 273 (377)
T 3dwl_C 214 -SPSGNALAYAGHDSSVTIAYPSAPEQP-----------PRALITVKLSQLPLRSLLWANESAIVAAGYNYS 273 (377)
T ss_dssp -CTTSSCEEEEETTTEEC-CEECSTTSC-----------EEECCCEECSSSCEEEEEEEETTEEEEEESSSS
T ss_pred -CCCCCEEEEEeCCCcEEEEECCCCCCc-----------ceeeEeecCCCCceEEEEEcCCCCEEEEEcCCc
Confidence 999999999999999999999886531 122567778899999999999999999998765
No 101
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=2.9e-32 Score=286.79 Aligned_cols=255 Identities=18% Similarity=0.298 Sum_probs=217.4
Q ss_pred eeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----ceeEEeecCCcCeeEEEEcC--CCCEEEEEeCCCeEE
Q 005277 415 TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN----ANLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRTAR 488 (704)
Q Consensus 415 ~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~----~~~~~~~~h~~~V~~v~~sp--~~~~l~sgs~dg~i~ 488 (704)
..+.+|.++|++++|+|++++|++|+.||+|++||+.++ .....+.+|..+|++++|+| ++.+|++|+.||+|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 456799999999999999999999999999999999876 35667789999999999999 699999999999999
Q ss_pred EEECCCC---------ceeEEeccCCCCeeEEEEcCC--CCEEEEEECCCcEEEEeCCCCcEEEEee-------------
Q 005277 489 IWSMDRI---------QPLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSGECVRIFI------------- 544 (704)
Q Consensus 489 lwd~~~~---------~~~~~~~~~~~~V~~v~~~p~--~~~l~tgs~dg~I~iwd~~~~~~~~~~~------------- 544 (704)
+||++.+ +++..+.+|...|.+++|+|+ +++|++++.||.|++||+++++.+..+.
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 9999876 557788899999999999999 9999999999999999999887554332
Q ss_pred cCCCCEEEEEEecC---CCEEEEEeCCCeEEEEeCCCCee--eeeecCCCceeeeeeeeeeehcccccccccccccccee
Q 005277 545 GHRSMILSLAMSPD---GRYMASGDEDGTIMMWDLASGRC--VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFL 619 (704)
Q Consensus 545 ~h~~~i~~l~~spd---g~~l~sg~~dg~I~iwdl~~~~~--~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~ 619 (704)
+|...+.+++|+|+ +.++++++.|+.+.+|+...++. +..+.+|...|.++.|
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~---------------------- 222 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISW---------------------- 222 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEE----------------------
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEE----------------------
Confidence 67889999999997 99999999999999888887765 7778899999999999
Q ss_pred eeeeeEEeecccCCCC----CEEEEEeCCCcEEEEeCCCCccccccccc-------------------------------
Q 005277 620 FYSLTIIYFGCASCEG----SLLASGSADCTVKLWDVTTSTKVLKTEEK------------------------------- 664 (704)
Q Consensus 620 ~~~~~~~~~~~~s~~g----~~lasgs~Dg~V~iWd~~~~~~~~~~~~~------------------------------- 664 (704)
+|++ .+|++|+.||.|++||+..+.........
T Consensus 223 ------------~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (351)
T 3f3f_A 223 ------------APSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAEL 290 (351)
T ss_dssp ------------CCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------
T ss_pred ------------CCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeee
Confidence 9998 89999999999999999875332211000
Q ss_pred cCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 665 SGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 665 ~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
........+..+..|..+|++++|+|++.+|++|+.||+
T Consensus 291 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~ 329 (351)
T 3f3f_A 291 QSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGK 329 (351)
T ss_dssp CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSC
T ss_pred cccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCc
Confidence 001122456677889999999999999999999999985
No 102
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=3.9e-32 Score=291.34 Aligned_cols=254 Identities=12% Similarity=0.108 Sum_probs=202.7
Q ss_pred EEEeeCCCCEEEEEEcCCCCEEEEEe-----------CCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccc
Q 005277 345 YTFINTHNGLNCASISQDGSLVAGGF-----------SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRS 413 (704)
Q Consensus 345 ~~~~~~~~~V~~~~fs~dg~~lasg~-----------~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (704)
+++..|...|.|++++ ++.+++|. .|+.+++|++........... ...
T Consensus 67 ~~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~-------------------~~~ 125 (365)
T 4h5i_A 67 FALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLT-------------------SVD 125 (365)
T ss_dssp EECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEE-------------------EEC
T ss_pred EEccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEee-------------------eec
Confidence 3456677788888764 45666654 467899999865321110000 000
Q ss_pred eeeccCCccCeEEEEEcCCCCEEEEE--eCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEE
Q 005277 414 YTLYQGHSGPVYSASFSPLGDFILSS--SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS 491 (704)
Q Consensus 414 ~~~~~~h~~~V~~l~~sp~~~~l~s~--s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd 491 (704)
......+...+.+++|+|||++++++ +.|++|+|||+.+++.+..+. |...|++++|+|+|+++++++.+ .+++|+
T Consensus 126 ~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~ 203 (365)
T 4h5i_A 126 FDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVIS 203 (365)
T ss_dssp SSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEE
T ss_pred eeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEE
Confidence 11122345668999999999998754 478999999999999988886 77889999999999999999854 566777
Q ss_pred CCCCceeEE--eccCCCCeeEEEEcCCCCEEEEEECCC----cEEEEeCCCCcE----EEEeecCCCCEEEEEEecCCCE
Q 005277 492 MDRIQPLRI--MAGHLSDVDCVRWHINCNYIATGSSDK----TVRLWDVSSGEC----VRIFIGHRSMILSLAMSPDGRY 561 (704)
Q Consensus 492 ~~~~~~~~~--~~~~~~~V~~v~~~p~~~~l~tgs~dg----~I~iwd~~~~~~----~~~~~~h~~~i~~l~~spdg~~ 561 (704)
..++..+.. ..+|...|.+++|+|+++++++++.|+ .+++||+..+.. ...+.+|...|++++|+|+|++
T Consensus 204 ~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~ 283 (365)
T 4h5i_A 204 TVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGEL 283 (365)
T ss_dssp TTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCE
T ss_pred eccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCc
Confidence 666665533 346888899999999999999999887 688999877654 3456789999999999999999
Q ss_pred EEEEeCCCeEEEEeCCCCeeeeee-cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEE
Q 005277 562 MASGDEDGTIMMWDLASGRCVTPL-MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLAS 640 (704)
Q Consensus 562 l~sg~~dg~I~iwdl~~~~~~~~~-~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~las 640 (704)
||+|+.||.|+|||+.+++++..+ .+|...|++++| +|+|++|||
T Consensus 284 lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~f----------------------------------Spdg~~laS 329 (365)
T 4h5i_A 284 AVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTI----------------------------------SPDSTYVAS 329 (365)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEE----------------------------------CTTSCEEEE
T ss_pred eEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEE----------------------------------CCCCCEEEE
Confidence 999999999999999999999875 789999999999 999999999
Q ss_pred EeCCCcEEEEeCCCC
Q 005277 641 GSADCTVKLWDVTTS 655 (704)
Q Consensus 641 gs~Dg~V~iWd~~~~ 655 (704)
||.|++|+||++...
T Consensus 330 ~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 330 VSAANTIHIIKLPLN 344 (365)
T ss_dssp EETTSEEEEEECCTT
T ss_pred EeCCCeEEEEEcCCC
Confidence 999999999999754
No 103
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=2e-31 Score=284.74 Aligned_cols=284 Identities=12% Similarity=0.140 Sum_probs=214.9
Q ss_pred EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (704)
Q Consensus 346 ~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (704)
+...|.+.|+|++|+|||++||+|+.+| ++||++.... .... .+...+.
T Consensus 14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~----------------------------~~~~--~~~~~~~ 62 (355)
T 3vu4_A 14 PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVA----------------------------HIMS--QEMRHLS 62 (355)
T ss_dssp -----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEE----------------------------EEEE--EECSCCC
T ss_pred ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcc----------------------------eeee--eecCCeE
Confidence 3467889999999999999999998776 7899976411 1111 1122478
Q ss_pred EEEEcCCCCEE-EEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceeEEecc
Q 005277 426 SASFSPLGDFI-LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-QPLRIMAG 503 (704)
Q Consensus 426 ~l~~sp~~~~l-~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~-~~~~~~~~ 503 (704)
.+++.++++.+ ++++.|++|++||+.+++.+..+. |..+|.++.|+++. ++++ .|+.|++||+.+. +.+..+..
T Consensus 63 ~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~ 138 (355)
T 3vu4_A 63 KVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR 138 (355)
T ss_dssp EEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE
T ss_pred EEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc
Confidence 88899988877 467888999999999999988887 66799999998764 4444 4789999999987 66555543
Q ss_pred CCCCeeEEEEcCCCCEEEE--EECCCcEEEEeCCCCc----------------EEEEeecCCCCEEEEEEecCCCEEEEE
Q 005277 504 HLSDVDCVRWHINCNYIAT--GSSDKTVRLWDVSSGE----------------CVRIFIGHRSMILSLAMSPDGRYMASG 565 (704)
Q Consensus 504 ~~~~V~~v~~~p~~~~l~t--gs~dg~I~iwd~~~~~----------------~~~~~~~h~~~i~~l~~spdg~~l~sg 565 (704)
+...+++++ .++++ |+.||.|++||+.++. ++..+.+|.+.|++++|+|+|++|++|
T Consensus 139 ---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~ 213 (355)
T 3vu4_A 139 ---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATC 213 (355)
T ss_dssp ---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred ---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEE
Confidence 445566777 56666 5789999999999875 267889999999999999999999999
Q ss_pred eCCCe-EEEEeCCCCeeeeeec-C-CCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEe
Q 005277 566 DEDGT-IMMWDLASGRCVTPLM-G-HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGS 642 (704)
Q Consensus 566 ~~dg~-I~iwdl~~~~~~~~~~-~-h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs 642 (704)
+.||+ |++||+++++++..+. + |...|.+++| +|++++|++|+
T Consensus 214 s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~----------------------------------s~~~~~l~s~s 259 (355)
T 3vu4_A 214 SQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKW----------------------------------STDGSKLAVVS 259 (355)
T ss_dssp ETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEE----------------------------------CTTSCEEEEEE
T ss_pred eCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEE----------------------------------CCCCCEEEEEE
Confidence 99998 9999999999999998 5 9999999999 99999999999
Q ss_pred CCCcEEEEeCCCCccccccccc--------cCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 643 ADCTVKLWDVTTSTKVLKTEEK--------SGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 643 ~Dg~V~iWd~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
.||+|+|||+..+.......-. .................+...++|+++|.+|++|+.||+
T Consensus 260 ~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~ 328 (355)
T 3vu4_A 260 DKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRM 328 (355)
T ss_dssp TTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTE
T ss_pred CCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCe
Confidence 9999999999875421110000 000000000111122334577999999999999998873
No 104
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=2.4e-31 Score=291.77 Aligned_cols=255 Identities=18% Similarity=0.373 Sum_probs=218.1
Q ss_pred eeeccCCccCeEEEEEcCC-CCEEEEEeCCCeEEEEeCCC----------CceeEEeecCCcCeeEEEEcCCCC-EEEEE
Q 005277 414 YTLYQGHSGPVYSASFSPL-GDFILSSSADTTIRLWSTKL----------NANLVCYKGHNYPVWDVQFNPQGH-YFASS 481 (704)
Q Consensus 414 ~~~~~~h~~~V~~l~~sp~-~~~l~s~s~Dg~I~lwd~~~----------~~~~~~~~~h~~~V~~v~~sp~~~-~l~sg 481 (704)
.....+|.+.|++++|+|+ +.+|++++.||.|++|++.. ...+..+.+|...|++++|+|++. +|++|
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 200 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA 200 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence 4556789999999999997 67899999999999999986 577888899999999999999988 99999
Q ss_pred eCCCeEEEEECCCCce-------eEEeccCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCC---cEEEEeecCCCCE
Q 005277 482 SHDRTARIWSMDRIQP-------LRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSG---ECVRIFIGHRSMI 550 (704)
Q Consensus 482 s~dg~i~lwd~~~~~~-------~~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~---~~~~~~~~h~~~i 550 (704)
+.||+|++|++..... ...+.+|...|.+++|+| ++.+|++++.||.|++||++++ +.+..+..|...|
T Consensus 201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 280 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV 280 (430)
T ss_dssp CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence 9999999999987322 466778999999999999 7889999999999999999987 5777888999999
Q ss_pred EEEEEecCCC-EEEEEeCCCeEEEEeCCC-CeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEee
Q 005277 551 LSLAMSPDGR-YMASGDEDGTIMMWDLAS-GRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYF 628 (704)
Q Consensus 551 ~~l~~spdg~-~l~sg~~dg~I~iwdl~~-~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (704)
++++|+|++. +|++|+.||.|++||+++ +.++..+.+|...|.++.|
T Consensus 281 ~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~------------------------------- 329 (430)
T 2xyi_A 281 NCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQW------------------------------- 329 (430)
T ss_dssp EEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEE-------------------------------
T ss_pred EEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEE-------------------------------
Confidence 9999999987 688999999999999998 5678889999999999999
Q ss_pred cccCCCCC-EEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCc-EEEEeecCCC
Q 005277 629 GCASCEGS-LLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL-LFAAGALSKT 703 (704)
Q Consensus 629 ~~~s~~g~-~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~-~La~gs~dgt 703 (704)
+|++. +|++|+.||.|+|||+........... ........+..+.+|..+|++++|+|++. +|++++.||+
T Consensus 330 ---sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~ 402 (430)
T 2xyi_A 330 ---SPHNETILASSGTDRRLHVWDLSKIGEEQSTED-AEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNI 402 (430)
T ss_dssp ---CSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHH-HHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSE
T ss_pred ---CCCCCCEEEEEeCCCcEEEEeCCCCccccCccc-cccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCC
Confidence 99884 799999999999999987432111000 00011245667788899999999999999 9999998874
No 105
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-32 Score=300.70 Aligned_cols=254 Identities=9% Similarity=0.105 Sum_probs=209.3
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEE
Q 005277 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (704)
Q Consensus 350 ~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 429 (704)
-..+|.+++|||||+++|+++.|++|+ +... . ..+.+|...|++++|
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~----------------------------~---~~l~gh~~~v~~V~F 60 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKY----------------------------A---KDINCNSKNLFHVKE 60 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECC----------------------------C---SCCSSBGGGTEEEEE
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--cccc----------------------------c---ceecCCCccEEEEEE
Confidence 347899999999999999999999999 5322 0 123589999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCceeEEee-cCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCC--
Q 005277 430 SPLGDFILSSSADTTIRLWSTKLNANLVCYK-GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS-- 506 (704)
Q Consensus 430 sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~-~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~-- 506 (704)
+|+| .++++.+|+.+ ....+. .|...|++++|+|+|.++|+++.||+|++||.+. .+..+. |..
T Consensus 61 sPdg-------~~~~~~~~~~~---~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~ 127 (588)
T 2j04_A 61 FPLE-------FENKLDFELAQ---QNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNL 127 (588)
T ss_dssp ECCC-------CCCTTTTSCCC---SSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCS
T ss_pred CCCC-------CcceEEEEeCC---CceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCcc
Confidence 9999 45555555543 222222 4588899999999999999999999999999654 666666 665
Q ss_pred ---CeeEEEEcCCCCEEEEEECCCcEEEEeCCCCc-------EEEEe----ecCCCCEEEEEEecCCCEEEEEeCCCeEE
Q 005277 507 ---DVDCVRWHINCNYIATGSSDKTVRLWDVSSGE-------CVRIF----IGHRSMILSLAMSPDGRYMASGDEDGTIM 572 (704)
Q Consensus 507 ---~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~-------~~~~~----~~h~~~i~~l~~spdg~~l~sg~~dg~I~ 572 (704)
.|.+++|||+|++|++|+.||+|++||+.++. .+..+ .+|.+.|.+++|+|+| +++++.|+.|+
T Consensus 128 ~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVr 205 (588)
T 2j04_A 128 SSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVF 205 (588)
T ss_dssp TTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEE
T ss_pred ccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEE
Confidence 49999999999999999999999999999886 35666 6778899999999999 88899999999
Q ss_pred EEeCCCCee---eeee-cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEE
Q 005277 573 MWDLASGRC---VTPL-MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVK 648 (704)
Q Consensus 573 iwdl~~~~~---~~~~-~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~ 648 (704)
+||+.++.. ..++ .+|...|.+++| + |+.||+++ +|+|+
T Consensus 206 lWd~~~~~~~~~~~tL~~~h~~~V~svaF----------------------------------s--g~~LASa~-~~tIk 248 (588)
T 2j04_A 206 SMTVSASSHQPVSRMIQNASRRKITDLKI----------------------------------V--DYKVVLTC-PGYVH 248 (588)
T ss_dssp EECCCSSSSCCCEEEEECCCSSCCCCEEE----------------------------------E--TTEEEEEC-SSEEE
T ss_pred EEECCCCccccceeeecccccCcEEEEEE----------------------------------E--CCEEEEEe-CCeEE
Confidence 999988773 3456 478899999999 7 68999997 69999
Q ss_pred EEeCCCCccccccccccCccccccccccCCCCcCeEEEEE--ccCCcEEEEeecCCC
Q 005277 649 LWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQF--SRRNLLFAAGALSKT 703 (704)
Q Consensus 649 iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~f--s~~g~~La~gs~dgt 703 (704)
+||+.++... ....+|...|+.+.| +|++..|++++.+|+
T Consensus 249 LWd~~~~~~~---------------~~~~gh~~~V~~va~~~s~d~~~La~a~edG~ 290 (588)
T 2j04_A 249 KIDLKNYSIS---------------SLKTGSLENFHIIPLNHEKESTILLMSNKTSY 290 (588)
T ss_dssp EEETTTTEEE---------------EEECSCCSCCCEEEETTCSSCEEEEECSSCEE
T ss_pred EEECCCCeEE---------------EEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC
Confidence 9999876431 112268999999999 999999999998875
No 106
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.3e-32 Score=298.96 Aligned_cols=266 Identities=17% Similarity=0.225 Sum_probs=216.8
Q ss_pred cCeEeecCCCCCC-eEEEEEeeCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccC
Q 005277 329 RNRVHLSSAALPS-VSFYTFINTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG 406 (704)
Q Consensus 329 ~~~~~l~~~~~p~-~~~~~~~~~~~~V~~~~fs~-dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (704)
...+++|+..... .+.+.+.+|.+.|+|++|+| ++.+|++|+.||+|+|||+....
T Consensus 141 dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~---------------------- 198 (435)
T 4e54_B 141 GGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNI---------------------- 198 (435)
T ss_dssp TSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCE----------------------
T ss_pred CCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCc----------------------
Confidence 4578999875543 45566788999999999998 68999999999999999986521
Q ss_pred CCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCC-EEEEEeCCC
Q 005277 407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-YFASSSHDR 485 (704)
Q Consensus 407 ~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~-~l~sgs~dg 485 (704)
.........+...+.+++|+|++.+|++|+.||+|++||++ ++.+..+.+|..+|++++|+|++. +|++|+.|+
T Consensus 199 ----~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~ 273 (435)
T 4e54_B 199 ----LRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQ 273 (435)
T ss_dssp ----EEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTS
T ss_pred ----eeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcc
Confidence 11112223345678899999999999999999999999997 567778899999999999999875 788999999
Q ss_pred eEEEEECCCCceeEE---eccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCC------CEEEEEEe
Q 005277 486 TARIWSMDRIQPLRI---MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS------MILSLAMS 556 (704)
Q Consensus 486 ~i~lwd~~~~~~~~~---~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~------~i~~l~~s 556 (704)
+|++||+++.+.... ..+|...|.+++|+|++++|++|+.||.|++||++++.+...+..|.. .+....|+
T Consensus 274 ~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (435)
T 4e54_B 274 TVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWH 353 (435)
T ss_dssp BCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEEC
T ss_pred eeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEc
Confidence 999999987654433 357999999999999999999999999999999999988887766653 23456788
Q ss_pred cCCCEEEEEe------------CCCeEEEEeCCCCeeeeeec-CCCceeeee-eeeeeehccccccccccccccceeeee
Q 005277 557 PDGRYMASGD------------EDGTIMMWDLASGRCVTPLM-GHTSCVWTL-AYRFLLLVTNAYLKISDKVSTGFLFYS 622 (704)
Q Consensus 557 pdg~~l~sg~------------~dg~I~iwdl~~~~~~~~~~-~h~~~V~sl-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (704)
|++.++++++ .++.|++||..+++.+..+. +|...|.++ .|
T Consensus 354 ~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~f------------------------- 408 (435)
T 4e54_B 354 PRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEF------------------------- 408 (435)
T ss_dssp SSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEE-------------------------
T ss_pred CCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEE-------------------------
Confidence 8887777764 34579999999999988774 678888887 57
Q ss_pred eeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCc
Q 005277 623 LTIIYFGCASCEGSLLASGSADCTVKLWDVTTST 656 (704)
Q Consensus 623 ~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~ 656 (704)
+|+|.+|++|+ |++|+||++..++
T Consensus 409 ---------spdg~~lasg~-d~~i~iW~~~~gk 432 (435)
T 4e54_B 409 ---------NPMGDTLASAM-GYHILIWSQQEAR 432 (435)
T ss_dssp ---------CTTSSCEEEEC-SSEEEECCCC---
T ss_pred ---------CCCCCEEEEEc-CCcEEEEECCcCe
Confidence 99999999886 7899999998864
No 107
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-32 Score=297.06 Aligned_cols=259 Identities=12% Similarity=0.206 Sum_probs=210.4
Q ss_pred ceeec-cCCccCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCC---Cc---eeEEeecCCcCeeEEEEcCCCCEEEEEeCC
Q 005277 413 SYTLY-QGHSGPVYSASFSP-LGDFILSSSADTTIRLWSTKL---NA---NLVCYKGHNYPVWDVQFNPQGHYFASSSHD 484 (704)
Q Consensus 413 ~~~~~-~~h~~~V~~l~~sp-~~~~l~s~s~Dg~I~lwd~~~---~~---~~~~~~~h~~~V~~v~~sp~~~~l~sgs~d 484 (704)
....+ .+|.++|++++|+| ++++|++|+.||+|++||+.+ +. ....+ +|..+|++++|+|++.+|++|+.|
T Consensus 54 ~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~d 132 (437)
T 3gre_A 54 LIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKD 132 (437)
T ss_dssp EEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETT
T ss_pred EEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCC
Confidence 44455 88999999999999 999999999999999999876 33 23333 499999999999999999999999
Q ss_pred CeEEEEECC---CCceeEEecc------------CCCCeeEEE--EcCCCCEEEEEECCCcEEEEeCCCCcEEEEeec--
Q 005277 485 RTARIWSMD---RIQPLRIMAG------------HLSDVDCVR--WHINCNYIATGSSDKTVRLWDVSSGECVRIFIG-- 545 (704)
Q Consensus 485 g~i~lwd~~---~~~~~~~~~~------------~~~~V~~v~--~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~-- 545 (704)
|+|++||++ .++....+.+ +...+.++. ++|++++|++|+.||.|++||+++++++..+.+
T Consensus 133 g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 212 (437)
T 3gre_A 133 GQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSP 212 (437)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCG
T ss_pred CEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCC
Confidence 999999995 4444433322 455667776 558899999999999999999999999999988
Q ss_pred CCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeec-CCCceeeeeeeeeeehccccccccccccccceeeeeee
Q 005277 546 HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM-GHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLT 624 (704)
Q Consensus 546 h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~-~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (704)
|...|++++|+|++++|++|+.||.|++||+++++++..+. .|...|.++.|.+
T Consensus 213 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~------------------------- 267 (437)
T 3gre_A 213 RHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQ------------------------- 267 (437)
T ss_dssp GGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECT-------------------------
T ss_pred CCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEecc-------------------------
Confidence 89999999999999999999999999999999999999886 7888999996611
Q ss_pred EEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCcccccc---------ccccCC--CCcCeEEEEEccCCc
Q 005277 625 IIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRS---------LKTLPT--KSTPVYSLQFSRRNL 693 (704)
Q Consensus 625 ~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~---------l~~~~~--~~~~V~~l~fs~~g~ 693 (704)
.+++++.+|++|+.||.|++||+.++................. -..+.+ |..+|.+++|+ ++.
T Consensus 268 -----~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~ 341 (437)
T 3gre_A 268 -----FYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK 341 (437)
T ss_dssp -----TTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE
T ss_pred -----ccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce
Confidence 1167888999999999999999998876544432211110000 012333 78899999999 889
Q ss_pred EEEEeecCCC
Q 005277 694 LFAAGALSKT 703 (704)
Q Consensus 694 ~La~gs~dgt 703 (704)
+|++|+.||+
T Consensus 342 ~l~s~~~d~~ 351 (437)
T 3gre_A 342 ILLTDEATSS 351 (437)
T ss_dssp EEEEEGGGTE
T ss_pred EEEecCCCCe
Confidence 9999999874
No 108
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=5.2e-31 Score=289.31 Aligned_cols=254 Identities=26% Similarity=0.562 Sum_probs=221.7
Q ss_pred cCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCC
Q 005277 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (704)
Q Consensus 329 ~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (704)
...+++|+..... +..++.+|...|.|++| ++++|++|+.||.|++||+.+
T Consensus 152 dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~-------------------------- 202 (435)
T 1p22_A 152 DNTIKIWDKNTLE-CKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT-------------------------- 202 (435)
T ss_dssp SSCEEEEESSSCC-EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS--------------------------
T ss_pred CCeEEEEeCCCCe-EEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC--------------------------
Confidence 3467778764433 44567789999999999 788999999999999999875
Q ss_pred CCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee---EEeecCCcCeeEEEEcCCCCEEEEEeCCC
Q 005277 409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL---VCYKGHNYPVWDVQFNPQGHYFASSSHDR 485 (704)
Q Consensus 409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~---~~~~~h~~~V~~v~~sp~~~~l~sgs~dg 485 (704)
......+.+|.+.|.+++|+ +.++++|+.||+|++||+.++... ..+.+|...|.+++| ++.++++|+.||
T Consensus 203 --~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg 276 (435)
T 1p22_A 203 --GEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDR 276 (435)
T ss_dssp --CCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTS
T ss_pred --CcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCC
Confidence 23456677899999999997 458999999999999999988765 667889999999999 788999999999
Q ss_pred eEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEE
Q 005277 486 TARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG 565 (704)
Q Consensus 486 ~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg 565 (704)
.|++||+++++.+..+.+|...|.++.| +++++++|+.||.|++||+++++++..+.+|...|.+++| ++.+|++|
T Consensus 277 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg 352 (435)
T 1p22_A 277 TIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSG 352 (435)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEE
T ss_pred eEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEE
Confidence 9999999999999999999999999998 4689999999999999999999999999999999999999 78999999
Q ss_pred eCCCeEEEEeCCCCe---------eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCC
Q 005277 566 DEDGTIMMWDLASGR---------CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGS 636 (704)
Q Consensus 566 ~~dg~I~iwdl~~~~---------~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 636 (704)
+.||.|++||+.++. ++..+.+|.+.|.++.| ++.
T Consensus 353 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~------------------------------------~~~ 396 (435)
T 1p22_A 353 AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF------------------------------------DEF 396 (435)
T ss_dssp ETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE------------------------------------CSS
T ss_pred eCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe------------------------------------CCC
Confidence 999999999997765 78888999999999877 567
Q ss_pred EEEEEeCCCcEEEEeCCCCcc
Q 005277 637 LLASGSADCTVKLWDVTTSTK 657 (704)
Q Consensus 637 ~lasgs~Dg~V~iWd~~~~~~ 657 (704)
+|++|+.||+|++||+.+...
T Consensus 397 ~l~s~s~Dg~i~iwd~~~~~~ 417 (435)
T 1p22_A 397 QIVSSSHDDTILIWDFLNDPA 417 (435)
T ss_dssp CEEECCSSSEEEEEC------
T ss_pred EEEEEeCCCEEEEEECCCCCC
Confidence 899999999999999988654
No 109
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.3e-32 Score=285.56 Aligned_cols=232 Identities=15% Similarity=0.101 Sum_probs=191.4
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEE
Q 005277 358 SISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFIL 437 (704)
Q Consensus 358 ~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~ 437 (704)
.+.+++.+|++|+.||.|++||+.+.. ....+. ...|.++.|+|+ ++
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~----------------------------~~~~~~--~~~v~~~~~~~~---~~ 89 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSK----------------------------TITTIT--TPNPRTGGEHPA---II 89 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSS----------------------------CEEEEE--EECCCTTCCCCS---EE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCc----------------------------EEEEEe--cCCceeeeeCCc---eE
Confidence 445688999999999999999987622 112221 467888889987 99
Q ss_pred EEeCCCeEEEEeCC---------CCceeEEee-cCCcCeeEEEEcC--CCCEEEEEeCCCeEEEEECCCCceeEEec-cC
Q 005277 438 SSSADTTIRLWSTK---------LNANLVCYK-GHNYPVWDVQFNP--QGHYFASSSHDRTARIWSMDRIQPLRIMA-GH 504 (704)
Q Consensus 438 s~s~Dg~I~lwd~~---------~~~~~~~~~-~h~~~V~~v~~sp--~~~~l~sgs~dg~i~lwd~~~~~~~~~~~-~~ 504 (704)
+++.|++|++|+.. ++..+..+. +|..+|.+++|+| ++.++++|+.||+|++||+++++.+.... .+
T Consensus 90 s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~ 169 (343)
T 3lrv_A 90 SRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKS 169 (343)
T ss_dssp EECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCS
T ss_pred EecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC
Confidence 99999999999765 444444444 6778999999999 99999999999999999999998877664 45
Q ss_pred CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEE-EEeec-CCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeee
Q 005277 505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECV-RIFIG-HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582 (704)
Q Consensus 505 ~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~-~~~~~-h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~ 582 (704)
...|.+++|+|++.+|++|+.||.|++||+++++.+ ..+.+ |.++|++++|+|+|.+|++++ |+.|++||+++++.+
T Consensus 170 ~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~ 248 (343)
T 3lrv_A 170 DVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGT 248 (343)
T ss_dssp SCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTC
T ss_pred CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcc
Confidence 568999999999999999999999999999999987 77887 999999999999999999999 559999999998876
Q ss_pred eeecC---CCceee--eeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeC-CCcEEEEeCCCCc
Q 005277 583 TPLMG---HTSCVW--TLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSA-DCTVKLWDVTTST 656 (704)
Q Consensus 583 ~~~~~---h~~~V~--sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~-Dg~V~iWd~~~~~ 656 (704)
..+.. |...+. +++| +|+|++|++|+. |+.|+||++....
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~----------------------------------~~~g~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 249 LAYPTYTIPEFKTGTVTYDI----------------------------------DDSGKNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp BSSCCCBC-----CCEEEEE----------------------------------CTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred eeecccccccccccceEEEE----------------------------------CCCCCEEEEecCCCCcEEEEEEcccc
Confidence 66554 444444 4777 999999999998 9999999997754
Q ss_pred c
Q 005277 657 K 657 (704)
Q Consensus 657 ~ 657 (704)
.
T Consensus 295 ~ 295 (343)
T 3lrv_A 295 K 295 (343)
T ss_dssp C
T ss_pred c
Confidence 3
No 110
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.98 E-value=2.5e-31 Score=288.45 Aligned_cols=254 Identities=17% Similarity=0.256 Sum_probs=217.2
Q ss_pred EEeeCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCe
Q 005277 346 TFINTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (704)
Q Consensus 346 ~~~~~~~~V~~~~fs~-dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 424 (704)
.+.+|.+.|++++|+| ++++||+|+.||.|+||++....... ........+.+|...|
T Consensus 76 ~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~---------------------~~~~~~~~~~~h~~~v 134 (402)
T 2aq5_A 76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL---------------------PLREPVITLEGHTKRV 134 (402)
T ss_dssp CBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS---------------------CBCSCSEEEECCSSCE
T ss_pred eEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc---------------------ccCCceEEecCCCCeE
Confidence 3568999999999999 89999999999999999987632110 0013456678999999
Q ss_pred EEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEe--ecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe
Q 005277 425 YSASFSPLG-DFILSSSADTTIRLWSTKLNANLVCY--KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM 501 (704)
Q Consensus 425 ~~l~~sp~~-~~l~s~s~Dg~I~lwd~~~~~~~~~~--~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~ 501 (704)
.+++|+|++ .+|++|+.||+|++||+.+++.+..+ .+|...|.+++|+|++.+|++++.||.|++||+++++.+..+
T Consensus 135 ~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 214 (402)
T 2aq5_A 135 GIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEK 214 (402)
T ss_dssp EEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEE
T ss_pred EEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeee
Confidence 999999998 69999999999999999999999998 789999999999999999999999999999999999999888
Q ss_pred -ccCCCC-eeEEEEcCCCCEEEEE---ECCCcEEEEeCCCCcE-EEEee-cCCCCEEEEEEecCCCEEEE-EeCCCeEEE
Q 005277 502 -AGHLSD-VDCVRWHINCNYIATG---SSDKTVRLWDVSSGEC-VRIFI-GHRSMILSLAMSPDGRYMAS-GDEDGTIMM 573 (704)
Q Consensus 502 -~~~~~~-V~~v~~~p~~~~l~tg---s~dg~I~iwd~~~~~~-~~~~~-~h~~~i~~l~~spdg~~l~s-g~~dg~I~i 573 (704)
.+|.+. +.++.|+|++.+|++| +.|+.|++||++++.. +.... .|...+.+++|+|+|++|++ |+.||.|++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i 294 (402)
T 2aq5_A 215 DRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRY 294 (402)
T ss_dssp ECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEE
T ss_pred ccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEE
Confidence 678776 8999999999999999 7899999999998654 33332 57788999999999999975 557999999
Q ss_pred EeCCCCee-eeeecC--CCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEE
Q 005277 574 WDLASGRC-VTPLMG--HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLW 650 (704)
Q Consensus 574 wdl~~~~~-~~~~~~--h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iW 650 (704)
||+.+++. +..+.. |...|.++.| +|++.++++ .++.+++|
T Consensus 295 ~d~~~~~~~~~~l~~~~~~~~v~~~~~----------------------------------sp~~~~~~s--~~~~~~~~ 338 (402)
T 2aq5_A 295 FEITSEAPFLHYLSMFSSKESQRGMGY----------------------------------MPKRGLEVN--KCEIARFY 338 (402)
T ss_dssp EEECSSTTCEEEEEEECCSSCCSEEEE----------------------------------CCGGGSCGG--GTEEEEEE
T ss_pred EEecCCCcceEeecccccCCcccceEE----------------------------------eccccccee--cceeEEEE
Confidence 99998874 444433 5689999999 999988775 46799999
Q ss_pred eCCCCc
Q 005277 651 DVTTST 656 (704)
Q Consensus 651 d~~~~~ 656 (704)
++.++.
T Consensus 339 ~l~~~~ 344 (402)
T 2aq5_A 339 KLHERK 344 (402)
T ss_dssp EEETTE
T ss_pred EcCCCc
Confidence 998754
No 111
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.98 E-value=5.7e-31 Score=285.21 Aligned_cols=258 Identities=16% Similarity=0.120 Sum_probs=178.9
Q ss_pred ccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee-----EEeecCCcCeeEEEEcC--------CCCEEEEEeC
Q 005277 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL-----VCYKGHNYPVWDVQFNP--------QGHYFASSSH 483 (704)
Q Consensus 417 ~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~-----~~~~~h~~~V~~v~~sp--------~~~~l~sgs~ 483 (704)
...|.+.+....+++++.+|++++.|++|+|||+.++... ..+.+|...|++++|+| ++++|++|+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~ 164 (393)
T 4gq1_A 85 ENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGD 164 (393)
T ss_dssp CC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEET
T ss_pred ccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEEC
Confidence 3445566666666777788999999999999999987653 23578999999999998 7899999999
Q ss_pred CCeEEEEECCCCceeEEeccCCCCeeEEEEcCCC-CEEEEEECCCcEEEEeCCCCcEEEE--------------------
Q 005277 484 DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECVRI-------------------- 542 (704)
Q Consensus 484 dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~-~~l~tgs~dg~I~iwd~~~~~~~~~-------------------- 542 (704)
|++|+|||+.+..++..+.+|...|.+++|+|++ ++|++|+.||+|++||+++++....
T Consensus 165 D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~ 244 (393)
T 4gq1_A 165 DCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPL 244 (393)
T ss_dssp TSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGG
T ss_pred CCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccc
Confidence 9999999999888888888899999999999987 5899999999999999998764432
Q ss_pred -----eecCCCCEEEEEEe-cCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehcccccccccccccc
Q 005277 543 -----FIGHRSMILSLAMS-PDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVST 616 (704)
Q Consensus 543 -----~~~h~~~i~~l~~s-pdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~ 616 (704)
..+|...+.++.|+ |+|+.|++++.|+.+++||+.+++....+..|...+..+.+..........
T Consensus 245 ~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--------- 315 (393)
T 4gq1_A 245 VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLF--------- 315 (393)
T ss_dssp C------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSS---------
T ss_pred eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccccccc---------
Confidence 23577788999987 799999999999999999999998888888888777776652211000000
Q ss_pred ceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEE
Q 005277 617 GFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFA 696 (704)
Q Consensus 617 ~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La 696 (704)
.... .. ......++.++++|+.||+|+|||+.++.. +..+..+..+|.+|+|+|||++||
T Consensus 316 ~~~~---~~--~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~---------------~~~~~~~~~~V~svafspdG~~LA 375 (393)
T 4gq1_A 316 PSLL---GA--CPHPRYMDYFATAHSQHGLIQLINTYEKDS---------------NSIPIQLGMPIVDFCWHQDGSHLA 375 (393)
T ss_dssp CCSS---CC--EECSSCTTEEEEEETTTTEEEEEETTCTTC---------------CEEEEECSSCEEEEEECTTSSEEE
T ss_pred Ccce---eE--EEccCCCCEEEEEECCCCEEEEEECCCCcE---------------EEEecCCCCcEEEEEEcCCCCEEE
Confidence 0000 00 001133556778899999999999988753 334456778999999999999999
Q ss_pred EeecCCC
Q 005277 697 AGALSKT 703 (704)
Q Consensus 697 ~gs~dgt 703 (704)
+|+.+|.
T Consensus 376 ~as~~Gv 382 (393)
T 4gq1_A 376 IATEGSV 382 (393)
T ss_dssp EEESSEE
T ss_pred EEeCCCe
Confidence 9998863
No 112
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.1e-31 Score=308.94 Aligned_cols=245 Identities=22% Similarity=0.340 Sum_probs=215.0
Q ss_pred eeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCC--CCceeEEeecCCcCeeEEEEcCC--CCEEEEEeCCCeEEEE
Q 005277 415 TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTK--LNANLVCYKGHNYPVWDVQFNPQ--GHYFASSSHDRTARIW 490 (704)
Q Consensus 415 ~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~--~~~~~~~~~~h~~~V~~v~~sp~--~~~l~sgs~dg~i~lw 490 (704)
..+.+|.++|++++|+|++++|++|+.||+|++||+. ++..+..+.+|..+|++++|+|+ ++++++|+.||+|++|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence 4567999999999999999999999999999999998 45677888999999999999987 9999999999999999
Q ss_pred ECCCCc--eeEEeccCCCCeeEEEEcCC--CCEEEEEECCCcEEEEeCCCC--cEEEEeecCCCCEEEEEEec-------
Q 005277 491 SMDRIQ--PLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSG--ECVRIFIGHRSMILSLAMSP------- 557 (704)
Q Consensus 491 d~~~~~--~~~~~~~~~~~V~~v~~~p~--~~~l~tgs~dg~I~iwd~~~~--~~~~~~~~h~~~i~~l~~sp------- 557 (704)
|+++++ .+..+.+|...|.+++|+|+ ++++++|+.||.|++||++++ .....+.+|...|.+++|+|
T Consensus 83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~ 162 (753)
T 3jro_A 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (753)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence 999886 67788899999999999999 999999999999999999877 34456678999999999999
Q ss_pred ------CCCEEEEEeCCCeEEEEeCCCC----eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEe
Q 005277 558 ------DGRYMASGDEDGTIMMWDLASG----RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIY 627 (704)
Q Consensus 558 ------dg~~l~sg~~dg~I~iwdl~~~----~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (704)
++.+|++|+.||.|++||++++ ..+..+.+|...|+++.|
T Consensus 163 ~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~------------------------------ 212 (753)
T 3jro_A 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW------------------------------ 212 (753)
T ss_dssp ----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEE------------------------------
T ss_pred ccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEe------------------------------
Confidence 5899999999999999999887 566788899999999999
Q ss_pred ecccCCC---CCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 628 FGCASCE---GSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 628 ~~~~s~~---g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
+|+ +.+|++|+.||.|++||+.++.... ...+.....+..+|++++|+|+|.+|++|+.||+
T Consensus 213 ----sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~----------~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~ 277 (753)
T 3jro_A 213 ----SPTVLLRSYLASVSQDRTCIIWTQDNEQGPW----------KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK 277 (753)
T ss_dssp ----CCCCSSSEEEEEEESSSCEEEEEESSSSSCC----------BCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSC
T ss_pred ----ccCCCCCCEEEEEecCCEEEEecCCCCCCcc----------eeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCE
Confidence 999 8999999999999999998864311 1223445568889999999999999999999884
No 113
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=6.3e-30 Score=269.87 Aligned_cols=255 Identities=15% Similarity=0.162 Sum_probs=219.8
Q ss_pred cCeEeecCCCCCC--eEEEEEeeCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEEc-ccCCccccccccCCCCCCCCcccc
Q 005277 329 RNRVHLSSAALPS--VSFYTFINTHNGLNCASISQDGS-LVAGGFSDSSLKVWDM-AKLGQQAVSSGLQGENDTTPREDI 404 (704)
Q Consensus 329 ~~~~~l~~~~~p~--~~~~~~~~~~~~V~~~~fs~dg~-~lasg~~dg~I~iwdl-~~~~~~~~~~~~~~~~~~~~~~~~ 404 (704)
...+++|...... ........|...|++++|+|+++ +|++|+.||.|++|++ ...
T Consensus 32 d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~--------------------- 90 (342)
T 1yfq_A 32 DGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP--------------------- 90 (342)
T ss_dssp TSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS---------------------
T ss_pred CCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCC---------------------
Confidence 3567777654433 33455668999999999999999 9999999999999998 641
Q ss_pred cCCCCCccceeeccC--CccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC---------CceeEEeecCCcCeeEEEEcC
Q 005277 405 IGPNGRKRSYTLYQG--HSGPVYSASFSPLGDFILSSSADTTIRLWSTKL---------NANLVCYKGHNYPVWDVQFNP 473 (704)
Q Consensus 405 ~~~~~~~~~~~~~~~--h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~---------~~~~~~~~~h~~~V~~v~~sp 473 (704)
....+.+ |...|.+++|+| +.+|++++.|+.|++||+.+ ++.+..+. |...|.+++|+|
T Consensus 91 --------~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~ 160 (342)
T 1yfq_A 91 --------SFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS 160 (342)
T ss_dssp --------SEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS
T ss_pred --------ceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC
Confidence 2245667 999999999999 99999999999999999987 66666666 889999999998
Q ss_pred CCCEEEEEeCCCeEEEEECCC-Cc--eeEEeccCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCC------cEEEEe
Q 005277 474 QGHYFASSSHDRTARIWSMDR-IQ--PLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSG------ECVRIF 543 (704)
Q Consensus 474 ~~~~l~sgs~dg~i~lwd~~~-~~--~~~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~------~~~~~~ 543 (704)
++ +++++.|+.|++||+++ .. .......|...|.+++|+| +++++++|+.||.|++||+..+ +....+
T Consensus 161 ~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~ 238 (342)
T 1yfq_A 161 SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF 238 (342)
T ss_dssp SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE
T ss_pred Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceee
Confidence 87 99999999999999988 44 3345557888999999999 9999999999999999999887 778888
Q ss_pred ecCCC---------CEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCC-Cceeeeeeeeeeehccccccccccc
Q 005277 544 IGHRS---------MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH-TSCVWTLAYRFLLLVTNAYLKISDK 613 (704)
Q Consensus 544 ~~h~~---------~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h-~~~V~sl~~~~~~~~~~~~~~~~~~ 613 (704)
..|.. .|.+++|+|+|++|++|+.||.|++||+.+++.+..+.+| ...|.++.
T Consensus 239 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~----------------- 301 (342)
T 1yfq_A 239 RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA----------------- 301 (342)
T ss_dssp ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE-----------------
T ss_pred ecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec-----------------
Confidence 88865 9999999999999999999999999999999999999998 88887763
Q ss_pred cccceeeeeeeEEeecccCCCCCEEEEEeCCCc-EEEEeC
Q 005277 614 VSTGFLFYSLTIIYFGCASCEGSLLASGSADCT-VKLWDV 652 (704)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~-V~iWd~ 652 (704)
+++.+|++|+.||. .+.|..
T Consensus 302 -------------------~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 302 -------------------CSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp -------------------ECSSEEEEEEECTHHHHCSSS
T ss_pred -------------------CCCCeEEEEecCCcccccccc
Confidence 47899999999998 555554
No 114
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.3e-31 Score=290.29 Aligned_cols=246 Identities=9% Similarity=0.064 Sum_probs=206.5
Q ss_pred eCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCcc-----C
Q 005277 349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG-----P 423 (704)
Q Consensus 349 ~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~ 423 (704)
.|...|.+++|||||++||+++.||.|+||+... ....+. |.. .
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~------------------------------~l~~l~-~~~~~~~~s 131 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK------------------------------MLTNLD-SKGNLSSRT 131 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE------------------------------EEEECC-CSSCSTTTC
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc------------------------------eeeecc-CCCcccccc
Confidence 4467899999999999999999999999999542 223334 444 5
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-------eEEe----ecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 005277 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNAN-------LVCY----KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM 492 (704)
Q Consensus 424 V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~-------~~~~----~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~ 492 (704)
|.+++|||||++|++|+.||+|++||+.++.. +.++ .+|...|.+++|+|+| +++++.|++|++||+
T Consensus 132 v~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~ 209 (588)
T 2j04_A 132 YHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTV 209 (588)
T ss_dssp EEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECC
T ss_pred EEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEEC
Confidence 99999999999999999999999999998753 5665 5677899999999999 888999999999999
Q ss_pred CCCce---eEEe-ccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEE--ecCCCEEEEEe
Q 005277 493 DRIQP---LRIM-AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAM--SPDGRYMASGD 566 (704)
Q Consensus 493 ~~~~~---~~~~-~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~--spdg~~l~sg~ 566 (704)
..... .+.+ .+|...|.+++|+ +++||+++ +++|++||+.+++......+|.+.|..++| +|++..|++++
T Consensus 210 ~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~ 286 (588)
T 2j04_A 210 SASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSN 286 (588)
T ss_dssp CSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECS
T ss_pred CCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEc
Confidence 88763 3456 4788999999999 68999997 699999999988875444489999999999 99999999999
Q ss_pred CCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCc
Q 005277 567 EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCT 646 (704)
Q Consensus 567 ~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~ 646 (704)
.||+ ++|... .+++ +|++..+++. |++
T Consensus 287 edG~-klw~~d----------------~~~~----------------------------------spd~~l~a~~--d~~ 313 (588)
T 2j04_A 287 KTSY-KVLLED----------------ELHV----------------------------------TADNIIAPYL--EKK 313 (588)
T ss_dssp SCEE-EEEESS----------------SEEE----------------------------------ECCCSSHHHH--HHH
T ss_pred CCCC-EEEeec----------------cEEE----------------------------------CCCceEEEEc--CCE
Confidence 9999 999976 1335 8899888775 999
Q ss_pred EEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeec
Q 005277 647 VKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL 700 (704)
Q Consensus 647 V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~ 700 (704)
+++|+...+. +..+.+ ...|++++|||||.++|+++.
T Consensus 314 v~lW~~~g~~----------------l~~~~~-~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 314 FKKWSTIWNE----------------FNNYET-TLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp HHHTTTTTTS----------------SSSSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred EEEEECCCCc----------------eeeecc-ceEEEEEEECCCCCEEEEEEe
Confidence 9999975432 334444 677999999999999998874
No 115
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=6.1e-29 Score=273.46 Aligned_cols=288 Identities=25% Similarity=0.454 Sum_probs=244.5
Q ss_pred cCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCC
Q 005277 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (704)
Q Consensus 329 ~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (704)
...+++|+..... +..++.+|.+.|.+++|+ +++|++|+.||.|++||+.+
T Consensus 138 dg~i~vwd~~~~~-~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~-------------------------- 188 (445)
T 2ovr_B 138 DNTLKVWSAVTGK-CLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAET-------------------------- 188 (445)
T ss_dssp TSCEEEEETTTCC-EEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTT--------------------------
T ss_pred CCcEEEEECCCCc-EEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCc--------------------------
Confidence 3567788765433 455678899999999997 67999999999999999875
Q ss_pred CCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEE
Q 005277 409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR 488 (704)
Q Consensus 409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~ 488 (704)
......+.+|...|.++.|+ ++.+++|+.||+|++||+.+++.+..+.+|..+|.+++| ++.++++|+.||.|+
T Consensus 189 --~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~ 262 (445)
T 2ovr_B 189 --GECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVK 262 (445)
T ss_dssp --TEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEE
T ss_pred --CcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEE
Confidence 23456677899999999996 678999999999999999999999999999999999999 788999999999999
Q ss_pred EEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCC
Q 005277 489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED 568 (704)
Q Consensus 489 lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~d 568 (704)
+||+++++++..+.+|...|.++.| ++.++++|+.||.|++||+++++++..+.+|...+.++.+ ++++|++|+.|
T Consensus 263 iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d 338 (445)
T 2ovr_B 263 VWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNAD 338 (445)
T ss_dssp EEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETT
T ss_pred EEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCC
Confidence 9999999999999999999999999 7899999999999999999999999999999999998887 47799999999
Q ss_pred CeEEEEeCCCCeeeeeecC---CCceeeeeeeeeee---hccccccccccccccceeee--------eeeEEeecccCCC
Q 005277 569 GTIMMWDLASGRCVTPLMG---HTSCVWTLAYRFLL---LVTNAYLKISDKVSTGFLFY--------SLTIIYFGCASCE 634 (704)
Q Consensus 569 g~I~iwdl~~~~~~~~~~~---h~~~V~sl~~~~~~---~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~s~~ 634 (704)
|.|++||+++++.+..+.+ |...|.++.|.... ...++.+.+++......... ....+...+++|+
T Consensus 339 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 418 (445)
T 2ovr_B 339 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT 418 (445)
T ss_dssp SCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSS
T ss_pred CeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCC
Confidence 9999999999999998876 88899999984322 22345566666544332211 1224555677999
Q ss_pred CCEEEEEeCCCc----EEEEeCCCC
Q 005277 635 GSLLASGSADCT----VKLWDVTTS 655 (704)
Q Consensus 635 g~~lasgs~Dg~----V~iWd~~~~ 655 (704)
+.++++|+.||+ |.|||+...
T Consensus 419 ~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 419 KLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEEEEEECSSSSSCCEEEEEECCCC
T ss_pred EEEEEEcccCCCCccEEEEEECCCC
Confidence 999999999998 999999764
No 116
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=2.7e-30 Score=283.43 Aligned_cols=234 Identities=14% Similarity=0.315 Sum_probs=197.5
Q ss_pred CCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-----------eeEEeecCC------------cCeeEEEEcCCC
Q 005277 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA-----------NLVCYKGHN------------YPVWDVQFNPQG 475 (704)
Q Consensus 419 ~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~-----------~~~~~~~h~------------~~V~~v~~sp~~ 475 (704)
.|.+.|++++|+|++++|++|+.||.|++|++.++. ....+.+|. .+|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 478999999999999999999999999999999876 477888998 889999999998
Q ss_pred --CEEEEEeCCCeEEEEECCCCcee---------------------------------------EE-eccCCCCeeEEEE
Q 005277 476 --HYFASSSHDRTARIWSMDRIQPL---------------------------------------RI-MAGHLSDVDCVRW 513 (704)
Q Consensus 476 --~~l~sgs~dg~i~lwd~~~~~~~---------------------------------------~~-~~~~~~~V~~v~~ 513 (704)
.+|++++.||+|++||+...... +. ..+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 89999999999999998763321 12 3579999999999
Q ss_pred cCCCCEEEEEECCCcEEEEeCCC-CcEEEE-------eecCCCCEEEEEEecCC-CEEEEEeCCCeEEEEeCCCCee---
Q 005277 514 HINCNYIATGSSDKTVRLWDVSS-GECVRI-------FIGHRSMILSLAMSPDG-RYMASGDEDGTIMMWDLASGRC--- 581 (704)
Q Consensus 514 ~p~~~~l~tgs~dg~I~iwd~~~-~~~~~~-------~~~h~~~i~~l~~spdg-~~l~sg~~dg~I~iwdl~~~~~--- 581 (704)
+|++++|++| .|+.|++||+++ +..+.. +.+|...|.+++|+|+| ++|++|+.||.|++||+++++.
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 264 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR 264 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence 9999999999 899999999984 445542 55899999999999998 9999999999999999999887
Q ss_pred -eeeecCCCc------------eeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEE
Q 005277 582 -VTPLMGHTS------------CVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVK 648 (704)
Q Consensus 582 -~~~~~~h~~------------~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~ 648 (704)
+..+.+|.. .|.++.| +|++.+|++|+. |.|+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----------------------------------s~~g~~l~~~~~-~~v~ 309 (447)
T 3dw8_B 265 HSKLFEEPEDPSNRSFFSEIISSISDVKF----------------------------------SHSGRYMMTRDY-LSVK 309 (447)
T ss_dssp TCEEECCC-----CCHHHHHTTCEEEEEE----------------------------------CTTSSEEEEEES-SEEE
T ss_pred eeeEeccCCCccccccccccCceEEEEEE----------------------------------CCCCCEEEEeeC-CeEE
Confidence 778888876 8999999 999999999999 9999
Q ss_pred EEeCCC-CccccccccccCccccccccccCCCCc---------------CeEEEEEccCCcEEEEeecCCC
Q 005277 649 LWDVTT-STKVLKTEEKSGTNRLRSLKTLPTKST---------------PVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 649 iWd~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~---------------~V~~l~fs~~g~~La~gs~dgt 703 (704)
|||+.+ +... ..+..|.. .+..++|+|++.+|++|+.||+
T Consensus 310 iwd~~~~~~~~---------------~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~ 365 (447)
T 3dw8_B 310 VWDLNMENRPV---------------ETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNF 365 (447)
T ss_dssp EEETTCCSSCS---------------CCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTE
T ss_pred EEeCCCCcccc---------------ceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCE
Confidence 999987 4332 22222221 2445999999999999999874
No 117
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.97 E-value=3.9e-29 Score=276.28 Aligned_cols=235 Identities=28% Similarity=0.530 Sum_probs=212.3
Q ss_pred ceeeccCCccCe-EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEE
Q 005277 413 SYTLYQGHSGPV-YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS 491 (704)
Q Consensus 413 ~~~~~~~h~~~V-~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd 491 (704)
....+.+|.+.| .++.+ ++++|++|+.||+|++||+.+++.+..+.+|..+|++++|+|++ ++++|+.||+|++||
T Consensus 113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd 189 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWD 189 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEE
T ss_pred ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEE
Confidence 445678898885 66666 47899999999999999999999999999999999999999988 999999999999999
Q ss_pred CCCCceeEEeccCCCCeeEEEEc--CCCCEEEEEECCCcEEEEeCCCCc-----------------------EEEEeecC
Q 005277 492 MDRIQPLRIMAGHLSDVDCVRWH--INCNYIATGSSDKTVRLWDVSSGE-----------------------CVRIFIGH 546 (704)
Q Consensus 492 ~~~~~~~~~~~~~~~~V~~v~~~--p~~~~l~tgs~dg~I~iwd~~~~~-----------------------~~~~~~~h 546 (704)
+++++.+..+.+|...|.+++|+ ++++++++|+.||+|++||++++. .+..+.+|
T Consensus 190 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (464)
T 3v7d_B 190 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH 269 (464)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCC
T ss_pred CCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCc
Confidence 99999999999999999999998 578999999999999999998765 25567789
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEE
Q 005277 547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTII 626 (704)
Q Consensus 547 ~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (704)
...|.++ +++++++++|+.||.|++||+++++.+..+.+|...|.++.|
T Consensus 270 ~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~----------------------------- 318 (464)
T 3v7d_B 270 MASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIY----------------------------- 318 (464)
T ss_dssp SSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE-----------------------------
T ss_pred cceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEE-----------------------------
Confidence 8888877 678999999999999999999999999999999999999999
Q ss_pred eecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCCC
Q 005277 627 YFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 627 ~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
+++++++++|+.||.|++||+.++.. +..+..|..+|.++.|+ +.+|++|+.||+
T Consensus 319 -----~~~~~~l~sg~~dg~i~vwd~~~~~~---------------~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~ 373 (464)
T 3v7d_B 319 -----DHERKRCISASMDTTIRIWDLENGEL---------------MYTLQGHTALVGLLRLS--DKFLVSAAADGS 373 (464)
T ss_dssp -----ETTTTEEEEEETTSCEEEEETTTTEE---------------EEEECCCSSCEEEEEEC--SSEEEEEETTSE
T ss_pred -----cCCCCEEEEEeCCCcEEEEECCCCcE---------------EEEEeCCCCcEEEEEEc--CCEEEEEeCCCc
Confidence 99999999999999999999988643 55677889999999997 578999999874
No 118
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=1.2e-28 Score=269.48 Aligned_cols=283 Identities=12% Similarity=0.057 Sum_probs=232.3
Q ss_pred EEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC
Q 005277 344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (704)
Q Consensus 344 ~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 423 (704)
..........+.+++|+|++.++++++.++.|++||+.+...... .....+.+|.+.
T Consensus 115 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~-----------------------~~~~~~~~~~~~ 171 (433)
T 3bws_A 115 FISRFKTGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRL-----------------------SPPEKYKKKLGF 171 (433)
T ss_dssp EEEEEECSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEE-----------------------CCCHHHHTTCCE
T ss_pred EEEEEcCCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeee-----------------------cCcccccccCCc
Confidence 333444556677999999888889998999999999875321110 011135689999
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEE-eCCCeEEEEECCCCceeEEec
Q 005277 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS-SHDRTARIWSMDRIQPLRIMA 502 (704)
Q Consensus 424 V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sg-s~dg~i~lwd~~~~~~~~~~~ 502 (704)
|.+++|+|++.++++++.|+.|++||+.+++.+..+..|...+.+++|+|++.+++++ +.|+.|++||+++++.+..+.
T Consensus 172 v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~ 251 (433)
T 3bws_A 172 VETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD 251 (433)
T ss_dssp EEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC
T ss_pred eeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec
Confidence 9999999999999999999999999999999999999999999999999999988554 479999999999998888777
Q ss_pred cCCCCeeEEEEcCCCCEEEEEE--------CCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEE-EEEeCCCeEEE
Q 005277 503 GHLSDVDCVRWHINCNYIATGS--------SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYM-ASGDEDGTIMM 573 (704)
Q Consensus 503 ~~~~~V~~v~~~p~~~~l~tgs--------~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l-~sg~~dg~I~i 573 (704)
.+ ..+.+++|+|+++++++++ .||.|++||+++++.+..+ .|...+.+++|+|+|+.+ ++++.|+.|++
T Consensus 252 ~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v 329 (433)
T 3bws_A 252 KI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEV 329 (433)
T ss_dssp CC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEE
T ss_pred CC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEE
Confidence 54 5699999999999999988 5889999999999887765 456689999999999755 66689999999
Q ss_pred EeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeC----------
Q 005277 574 WDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSA---------- 643 (704)
Q Consensus 574 wdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~---------- 643 (704)
||+.+++.+..+. +...+.++.| +|+++++++++.
T Consensus 330 ~d~~~~~~~~~~~-~~~~~~~~~~----------------------------------s~dg~~l~~~~~~~~~~~~~~~ 374 (433)
T 3bws_A 330 YDLKEKKVQKSIP-VFDKPNTIAL----------------------------------SPDGKYLYVSCRGPNHPTEGYL 374 (433)
T ss_dssp EETTTTEEEEEEE-CSSSEEEEEE----------------------------------CTTSSEEEEEECCCCCTTTCTT
T ss_pred EECCCCcEEEEec-CCCCCCeEEE----------------------------------cCCCCEEEEEecCCCccccccc
Confidence 9999998887776 6677888888 999998888776
Q ss_pred -----CCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeec-CC
Q 005277 644 -----DCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL-SK 702 (704)
Q Consensus 644 -----Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~-dg 702 (704)
||.|++||+.+++.. ..+.. ...+.+++|+|+|.+|++++. |+
T Consensus 375 ~~g~~dg~v~~~d~~~~~~~---------------~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~ 423 (433)
T 3bws_A 375 KKGLVLGKVYVIDTTTDTVK---------------EFWEA-GNQPTGLDVSPDNRYLVISDFLDH 423 (433)
T ss_dssp SCCSSCCEEEEEETTTTEEE---------------EEEEC-SSSEEEEEECTTSCEEEEEETTTT
T ss_pred cccccceEEEEEECCCCcEE---------------EEecC-CCCCceEEEcCCCCEEEEEECCCC
Confidence 579999999886542 22322 456899999999999988765 55
No 119
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=5.7e-29 Score=268.66 Aligned_cols=247 Identities=21% Similarity=0.323 Sum_probs=207.0
Q ss_pred eCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEE
Q 005277 349 NTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA 427 (704)
Q Consensus 349 ~~~~~V~~~~fs~-dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 427 (704)
.|...|.+++|+| ++.+|++|+.||.|++||+... .....+ .+...+.++
T Consensus 97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----------------------------~~~~~~-~~~~~~~~~ 147 (408)
T 4a11_B 97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTL----------------------------QTADVF-NFEETVYSH 147 (408)
T ss_dssp CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTT----------------------------EEEEEE-ECSSCEEEE
T ss_pred cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCC----------------------------ccceec-cCCCceeee
Confidence 4889999999999 7889999999999999998752 122222 367889999
Q ss_pred EEcCCC---CEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCC-EEEEEeCCCeEEEEECCCCc-eeEEe-
Q 005277 428 SFSPLG---DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-YFASSSHDRTARIWSMDRIQ-PLRIM- 501 (704)
Q Consensus 428 ~~sp~~---~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~-~l~sgs~dg~i~lwd~~~~~-~~~~~- 501 (704)
.|+|.+ .++++++.||.|++||+.++..+..+.+|..+|.+++|+|++. .|++|+.||.|++||+++.. ++..+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~ 227 (408)
T 4a11_B 148 HMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLD 227 (408)
T ss_dssp EECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECC
T ss_pred EeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccc
Confidence 999854 4999999999999999999999999999999999999999988 59999999999999998765 44444
Q ss_pred --------------ccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCC-----CCEEEEEEecCCCEE
Q 005277 502 --------------AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-----SMILSLAMSPDGRYM 562 (704)
Q Consensus 502 --------------~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-----~~i~~l~~spdg~~l 562 (704)
.+|...|.+++|+|++++|++++.||.|++||+.+++....+.++. ..+........+..+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (408)
T 4a11_B 228 QHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEF 307 (408)
T ss_dssp TTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCE
T ss_pred ccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceE
Confidence 5688999999999999999999999999999999987765443321 122222223345667
Q ss_pred EEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEe
Q 005277 563 ASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGS 642 (704)
Q Consensus 563 ~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs 642 (704)
++++.|+.|++||+.+++.+..+.+|...|.++.| +|++.+|++|+
T Consensus 308 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~----------------------------------s~~~~~l~s~~ 353 (408)
T 4a11_B 308 VFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVF----------------------------------QSNFQELYSGS 353 (408)
T ss_dssp EEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEE----------------------------------ETTTTEEEEEE
T ss_pred EEEecCCEEEEEECcCCcceeeeccCCCeEEEEEE----------------------------------cCCCCEEEEEC
Confidence 77888999999999999999999999999999999 99999999999
Q ss_pred CCCcEEEEeCCCCccc
Q 005277 643 ADCTVKLWDVTTSTKV 658 (704)
Q Consensus 643 ~Dg~V~iWd~~~~~~~ 658 (704)
.||.|++||+.+.+.+
T Consensus 354 ~dg~i~iw~~~~~~~~ 369 (408)
T 4a11_B 354 RDCNILAWVPSLYEPV 369 (408)
T ss_dssp TTSCEEEEEECC----
T ss_pred CCCeEEEEeCCCCCcc
Confidence 9999999999987654
No 120
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=3.1e-30 Score=279.46 Aligned_cols=246 Identities=14% Similarity=0.126 Sum_probs=182.7
Q ss_pred eCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEE
Q 005277 349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS 428 (704)
Q Consensus 349 ~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 428 (704)
.|...+....+++++.+||+|+.|++|+|||+....... ......+.||.+.|++++
T Consensus 87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~-----------------------~~~~~~~~gH~~~v~~v~ 143 (393)
T 4gq1_A 87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIIT-----------------------QHVLGGKSGHHNFVNDID 143 (393)
T ss_dssp ----------CCEEEEEEEEEETTSCEEEEEEETTEEEE-----------------------EEEECTTTSCSSCEEEEE
T ss_pred ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccce-----------------------eeeecccCCCCCceEEEE
Confidence 344455666677789999999999999999987532111 123445789999999999
Q ss_pred EcC--------CCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCC-CEEEEEeCCCeEEEEECCCCceeE
Q 005277 429 FSP--------LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRIQPLR 499 (704)
Q Consensus 429 ~sp--------~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~-~~l~sgs~dg~i~lwd~~~~~~~~ 499 (704)
|+| ++++|+||+.|++|+|||+.++.++..+.+|..+|.+++|+|++ .+|++|+.||+|++||+++++...
T Consensus 144 ~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~ 223 (393)
T 4gq1_A 144 IADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAE 223 (393)
T ss_dssp EEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC---
T ss_pred EccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccc
Confidence 998 78899999999999999999998888888899999999999987 589999999999999998765432
Q ss_pred E-------------------------eccCCCCeeEEEEc-CCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEE
Q 005277 500 I-------------------------MAGHLSDVDCVRWH-INCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSL 553 (704)
Q Consensus 500 ~-------------------------~~~~~~~V~~v~~~-p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l 553 (704)
. ..+|...+.++.|+ |++..|++++.|+++++||+.+++....+..|...+..+
T Consensus 224 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~ 303 (393)
T 4gq1_A 224 ENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPK 303 (393)
T ss_dssp -------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------
T ss_pred cccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccE
Confidence 2 23577889999987 799999999999999999999887776666665555444
Q ss_pred EEec--------------------CCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccc
Q 005277 554 AMSP--------------------DGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDK 613 (704)
Q Consensus 554 ~~sp--------------------dg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~ 613 (704)
.+.| ++.++++|+.||.|++||+.+++.+....+|..+|.+++|
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svaf---------------- 367 (393)
T 4gq1_A 304 NLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCW---------------- 367 (393)
T ss_dssp CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEE----------------
T ss_pred EEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEE----------------
Confidence 3333 3446778889999999999999998888889999999999
Q ss_pred cccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeC
Q 005277 614 VSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDV 652 (704)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~ 652 (704)
+|+|++||+++.+| +.+|.+
T Consensus 368 ------------------spdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 368 ------------------HQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp ------------------CTTSSEEEEEESSE-EEEEEE
T ss_pred ------------------cCCCCEEEEEeCCC-eEEEEE
Confidence 99999999999766 666654
No 121
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.1e-29 Score=273.58 Aligned_cols=220 Identities=15% Similarity=0.087 Sum_probs=193.5
Q ss_pred eeCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEEcc--cCCccccccccCCCCCCCCcccccCCCCCccceeecc--CCcc
Q 005277 348 INTHNGLNCASISQDGSLV-AGGFSDSSLKVWDMA--KLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ--GHSG 422 (704)
Q Consensus 348 ~~~~~~V~~~~fs~dg~~l-asg~~dg~I~iwdl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~ 422 (704)
.+|.+.|+|++|+|++++| |+|+.||.|+||++. .. .....+. +|..
T Consensus 99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~----------------------------~~~~~~~~~~~~~ 150 (450)
T 2vdu_B 99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSK----------------------------NVLKLRKRFCFSK 150 (450)
T ss_dssp -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSS----------------------------SCEEEEEEEECSS
T ss_pred CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCC----------------------------ceeeeeecccCCC
Confidence 4678899999999999996 899999999999987 31 1222332 5778
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE----EeecCCcCeeEEEEcCC---CCEEEEEeCCCeEEEEECCCC
Q 005277 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV----CYKGHNYPVWDVQFNPQ---GHYFASSSHDRTARIWSMDRI 495 (704)
Q Consensus 423 ~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~----~~~~h~~~V~~v~~sp~---~~~l~sgs~dg~i~lwd~~~~ 495 (704)
.|.+++|+|++++|++|+.||.|++|++.++.... .+.+|...|++++|+|+ +.+|++|+.|++|++||++++
T Consensus 151 ~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~ 230 (450)
T 2vdu_B 151 RPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC 230 (450)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT
T ss_pred CceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC
Confidence 99999999999999999999999999998877554 77889999999999999 999999999999999999998
Q ss_pred ceeEE-eccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeec-------------------------CCCC
Q 005277 496 QPLRI-MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG-------------------------HRSM 549 (704)
Q Consensus 496 ~~~~~-~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~-------------------------h~~~ 549 (704)
+.+.. +.+|...|.+++|+ ++++|++|+.|+.|++||+++++++..+.. ....
T Consensus 231 ~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (450)
T 2vdu_B 231 FIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFA 309 (450)
T ss_dssp TCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCC
T ss_pred ceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEE
Confidence 88877 55899999999999 999999999999999999999998888763 2457
Q ss_pred EEEEEEecCCCEEEEEe-CCCeEEEEeC--CCC---eeeeeecCCCceeeeeee
Q 005277 550 ILSLAMSPDGRYMASGD-EDGTIMMWDL--ASG---RCVTPLMGHTSCVWTLAY 597 (704)
Q Consensus 550 i~~l~~spdg~~l~sg~-~dg~I~iwdl--~~~---~~~~~~~~h~~~V~sl~~ 597 (704)
|.+++|+|++++|++++ .|+.|++||+ .++ ..+..+.+| ..|.+++|
T Consensus 310 v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~ 362 (450)
T 2vdu_B 310 VSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSA 362 (450)
T ss_dssp EEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEe
Confidence 99999999999999998 8999999999 565 677778888 88999999
No 122
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=1.8e-28 Score=260.60 Aligned_cols=260 Identities=16% Similarity=0.170 Sum_probs=218.3
Q ss_pred cCeEeecCCCC-CCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCC
Q 005277 329 RNRVHLSSAAL-PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP 407 (704)
Q Consensus 329 ~~~~~l~~~~~-p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (704)
...+++|+... .......+..|...|++++|+|++++|++|+.||.|++||+...
T Consensus 63 dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~------------------------ 118 (368)
T 3mmy_A 63 ANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSN------------------------ 118 (368)
T ss_dssp TSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT------------------------
T ss_pred CCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCC------------------------
Confidence 35688888766 33434677889999999999999999999999999999998752
Q ss_pred CCCccceeeccCCccCeEEEEE--cCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCC
Q 005277 408 NGRKRSYTLYQGHSGPVYSASF--SPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR 485 (704)
Q Consensus 408 ~~~~~~~~~~~~h~~~V~~l~~--sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg 485 (704)
....+.+|..+|.+++| +|++.+|++++.||+|++||+.+++.+..+..|. .+.++.+. +..+++++.++
T Consensus 119 -----~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~ 190 (368)
T 3mmy_A 119 -----QAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVI--YPMAVVATAER 190 (368)
T ss_dssp -----EEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEE--TTEEEEEEGGG
T ss_pred -----CceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEec--CCeeEEEeCCC
Confidence 12234569999999999 8999999999999999999999999999888765 56666665 45889999999
Q ss_pred eEEEEECCCCceeEEec--cCCCCeeEEEEcCCCCE----EEEEECCCcEEEEeCCCC---cEEEEeecCCC--------
Q 005277 486 TARIWSMDRIQPLRIMA--GHLSDVDCVRWHINCNY----IATGSSDKTVRLWDVSSG---ECVRIFIGHRS-------- 548 (704)
Q Consensus 486 ~i~lwd~~~~~~~~~~~--~~~~~V~~v~~~p~~~~----l~tgs~dg~I~iwd~~~~---~~~~~~~~h~~-------- 548 (704)
.+++|+++......... .+...+.++++.++... +++|+.||.|++||++.. ..+..+.+|..
T Consensus 191 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (368)
T 3mmy_A 191 GLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAP 270 (368)
T ss_dssp CEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCC
T ss_pred cEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccccccc
Confidence 99999998765433322 34456777777765544 999999999999999987 56777777776
Q ss_pred ----CEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeee
Q 005277 549 ----MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLT 624 (704)
Q Consensus 549 ----~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (704)
.|++++|+|+|++|++|+.||.|++||+.+++++..+.+|...|.+++|
T Consensus 271 ~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--------------------------- 323 (368)
T 3mmy_A 271 QDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCF--------------------------- 323 (368)
T ss_dssp EEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEE---------------------------
T ss_pred ccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEE---------------------------
Confidence 7999999999999999999999999999999999999999999999999
Q ss_pred EEeecccCCCCCEEEEEeCCCcEEEEeCCC
Q 005277 625 IIYFGCASCEGSLLASGSADCTVKLWDVTT 654 (704)
Q Consensus 625 ~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~ 654 (704)
+|+|.+|++|+.|+..+.|++..
T Consensus 324 -------s~~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 324 -------NHNGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp -------CTTSSCEEEEECCCSTTCGGGCC
T ss_pred -------CCCCCeEEEEecccccccccccC
Confidence 99999999999998766666544
No 123
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=1.6e-27 Score=245.99 Aligned_cols=260 Identities=15% Similarity=0.108 Sum_probs=183.9
Q ss_pred EEEEEEcCCCC---EEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccc-cCCC-CCccceeeccCCccCeEEEE
Q 005277 354 LNCASISQDGS---LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDI-IGPN-GRKRSYTLYQGHSGPVYSAS 428 (704)
Q Consensus 354 V~~~~fs~dg~---~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~h~~~V~~l~ 428 (704)
+.++.|-.-|- .+++++ ...|++|+................ ..+...+ ..++ .+.-++..-.-|...|.+++
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla 118 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFA--EVPVLQIVPVPDVYNLVCVALGNLEIREIRALF 118 (356)
T ss_dssp EEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECC--SSCEEEECCCTTCCSCEEEEECSSSEEEEEEEC
T ss_pred EeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEecc--CceeEEEEEcCcccceeeeeeccccccceEEEE
Confidence 66777765443 566665 678999998764111110000000 0000000 0010 11112222233556778888
Q ss_pred EcCC----CCEEEEEeC--------------------CCeEEEEeCC-CCceeEEeecCCcCeeEEEEcC---CCCEEEE
Q 005277 429 FSPL----GDFILSSSA--------------------DTTIRLWSTK-LNANLVCYKGHNYPVWDVQFNP---QGHYFAS 480 (704)
Q Consensus 429 ~sp~----~~~l~s~s~--------------------Dg~I~lwd~~-~~~~~~~~~~h~~~V~~v~~sp---~~~~l~s 480 (704)
|+|+ ++++++++. |++|++|++. .++.+..+.+|...+..++|+| ++.+|++
T Consensus 119 ~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaS 198 (356)
T 2w18_A 119 CSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLG 198 (356)
T ss_dssp C------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEE
T ss_pred ECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEE
Confidence 8888 666666543 8889999984 4777788888998999999999 7799999
Q ss_pred EeCCCeEEEEECCCCceeEEeccCC---CCeeEEEEcCCCCEE------------EEEECCCcEEEEeCCCCcEEEEe--
Q 005277 481 SSHDRTARIWSMDRIQPLRIMAGHL---SDVDCVRWHINCNYI------------ATGSSDKTVRLWDVSSGECVRIF-- 543 (704)
Q Consensus 481 gs~dg~i~lwd~~~~~~~~~~~~~~---~~V~~v~~~p~~~~l------------~tgs~dg~I~iwd~~~~~~~~~~-- 543 (704)
|+.|++|+|||+.+++.++.+.+|. ..+.+++|+|+|.++ ++|+.|++|++||..+++.+..+
T Consensus 199 gS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~ 278 (356)
T 2w18_A 199 TTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLY 278 (356)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEE
T ss_pred ecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999998654 357778999999886 56888999999999999988766
Q ss_pred ---ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceee-eeeeeeeehcccccccccccccccee
Q 005277 544 ---IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVW-TLAYRFLLLVTNAYLKISDKVSTGFL 619 (704)
Q Consensus 544 ---~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~-sl~~~~~~~~~~~~~~~~~~~~~~~~ 619 (704)
.+|...+.+..++ +.++++|+.||+|+|||+.+++++.++.+|...+. +++|
T Consensus 279 ~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vaf---------------------- 334 (356)
T 2w18_A 279 CLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKW---------------------- 334 (356)
T ss_dssp CCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEE----------------------
T ss_pred eccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEE----------------------
Confidence 3676665555554 88999999999999999999999999999987665 4789
Q ss_pred eeeeeEEeecccCCCCCEEEEEeCCCcEEEEeC
Q 005277 620 FYSLTIIYFGCASCEGSLLASGSADCTVKLWDV 652 (704)
Q Consensus 620 ~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~ 652 (704)
+|+|++|++|+.|++|+|||+
T Consensus 335 ------------SPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 335 ------------SGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp ------------CSSSSEEEEECTTSCEEEEEE
T ss_pred ------------CCCCCEEEEEECCCcEEEecC
Confidence 999999999999999999995
No 124
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=2.9e-26 Score=247.02 Aligned_cols=263 Identities=14% Similarity=0.131 Sum_probs=213.9
Q ss_pred CeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCC
Q 005277 330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLV-AGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (704)
Q Consensus 330 ~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~l-asg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (704)
..+++|+..... ......++..+.+++|+|+|++| ++++.|+.|++||+.+.
T Consensus 12 ~~v~v~d~~~~~--~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~------------------------- 64 (391)
T 1l0q_A 12 DNISVIDVTSNK--VTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN------------------------- 64 (391)
T ss_dssp TEEEEEETTTTE--EEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT-------------------------
T ss_pred CEEEEEECCCCe--EEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCC-------------------------
Confidence 467777654332 22234455679999999999976 67778999999998652
Q ss_pred CCccceeeccCCccCeEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEE-EEEeCCCe
Q 005277 409 GRKRSYTLYQGHSGPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF-ASSSHDRT 486 (704)
Q Consensus 409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~l~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l-~sgs~dg~ 486 (704)
.....+..|. .+.+++|+|++++|+ +++.++.|++||+.+++.+..+..| ..+.+++|+|+++++ ++++.++.
T Consensus 65 ---~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~ 139 (391)
T 1l0q_A 65 ---NVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKT 139 (391)
T ss_dssp ---EEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTE
T ss_pred ---eEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCE
Confidence 2233333333 899999999999876 5556799999999999888887755 468999999999977 67888999
Q ss_pred EEEEECCCCceeEEeccCCCCeeEEEEcCCCCEE-EEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEE
Q 005277 487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI-ATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG 565 (704)
Q Consensus 487 i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l-~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg 565 (704)
|++||+.+++.+..+..+ ..+.+++|+|+++++ ++++.++.|++||+++++.+..+. +...+.+++|+|+|++|+++
T Consensus 140 v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~ 217 (391)
T 1l0q_A 140 VSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVT 217 (391)
T ss_dssp EEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEE
T ss_pred EEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEE
Confidence 999999999888888765 567999999999988 567788999999999998887775 55689999999999999988
Q ss_pred e---CCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEE-EEE
Q 005277 566 D---EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLL-ASG 641 (704)
Q Consensus 566 ~---~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l-asg 641 (704)
+ .++.|++||+.+++.+..+..|.. +.++.| +|++++| +++
T Consensus 218 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~----------------------------------s~dg~~l~~s~ 262 (391)
T 1l0q_A 218 NVDKYFNTVSMIDTGTNKITARIPVGPD-PAGIAV----------------------------------TPDGKKVYVAL 262 (391)
T ss_dssp EECSSCCEEEEEETTTTEEEEEEECCSS-EEEEEE----------------------------------CTTSSEEEEEE
T ss_pred ecCcCCCcEEEEECCCCeEEEEEecCCC-ccEEEE----------------------------------ccCCCEEEEEc
Confidence 8 689999999999999888887654 677888 9999877 677
Q ss_pred eCCCcEEEEeCCCCcccccc
Q 005277 642 SADCTVKLWDVTTSTKVLKT 661 (704)
Q Consensus 642 s~Dg~V~iWd~~~~~~~~~~ 661 (704)
+.|+.|++||+.+++.....
T Consensus 263 ~~d~~v~v~d~~~~~~~~~~ 282 (391)
T 1l0q_A 263 SFXNTVSVIDTATNTITATM 282 (391)
T ss_dssp TTTTEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEECCCCcEEEEE
Confidence 88999999999987655433
No 125
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.2e-28 Score=258.27 Aligned_cols=223 Identities=12% Similarity=0.052 Sum_probs=184.8
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECC---------CCcee
Q 005277 428 SFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD---------RIQPL 498 (704)
Q Consensus 428 ~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~---------~~~~~ 498 (704)
.+.+++.+|++|+.||+|++||+.+++.+..+. ...|.++.|+|. +++|+.|+++++|+.+ +.+.+
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~ 117 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL 117 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence 445678899999999999999999999888776 567888999988 9999999999999765 44444
Q ss_pred EEec-cCCCCeeEEEEcC--CCCEEEEEECCCcEEEEeCCCCcEEEEee-cCCCCEEEEEEecCCCEEEEEeCCCeEEEE
Q 005277 499 RIMA-GHLSDVDCVRWHI--NCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSPDGRYMASGDEDGTIMMW 574 (704)
Q Consensus 499 ~~~~-~~~~~V~~v~~~p--~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~i~~l~~spdg~~l~sg~~dg~I~iw 574 (704)
..+. +|...|.+++|+| +++++++|+.||+|++||+++++++.... .|...|++++|+|+|.+|++|+.||.|++|
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iw 197 (343)
T 3lrv_A 118 REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVY 197 (343)
T ss_dssp EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEE
T ss_pred EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 4444 6778899999999 99999999999999999999999977664 455689999999999999999999999999
Q ss_pred eCCCCeee-eeecC-CCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeC
Q 005277 575 DLASGRCV-TPLMG-HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDV 652 (704)
Q Consensus 575 dl~~~~~~-~~~~~-h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~ 652 (704)
|+++++.+ ..+.+ |.+.|.++.| +|++.+|++|+ |+.|++||+
T Consensus 198 d~~~~~~~~~~~~~~h~~~v~~l~f----------------------------------s~~g~~l~s~~-~~~v~iwd~ 242 (343)
T 3lrv_A 198 NLSSPDQASSRFPVDEEAKIKEVKF----------------------------------ADNGYWMVVEC-DQTVVCFDL 242 (343)
T ss_dssp ESSCTTSCCEECCCCTTSCEEEEEE----------------------------------CTTSSEEEEEE-SSBEEEEET
T ss_pred ECCCCCCCccEEeccCCCCEEEEEE----------------------------------eCCCCEEEEEe-CCeEEEEEc
Confidence 99999887 77887 9999999999 99999999999 559999999
Q ss_pred CCCccccccccccCccccccccccCCCCcCe--EEEEEccCCcEEEEeec-CC
Q 005277 653 TTSTKVLKTEEKSGTNRLRSLKTLPTKSTPV--YSLQFSRRNLLFAAGAL-SK 702 (704)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V--~~l~fs~~g~~La~gs~-dg 702 (704)
.+...... +..+..+..++ .+++|+|+|.+|++|+. |+
T Consensus 243 ~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~ 283 (343)
T 3lrv_A 243 RKDVGTLA------------YPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESN 283 (343)
T ss_dssp TSSTTCBS------------SCCCBC-----CCEEEEECTTSSEEEEEETTTT
T ss_pred CCCCccee------------ecccccccccccceEEEECCCCCEEEEecCCCC
Confidence 88754321 22222233333 46999999999999876 54
No 126
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=1.9e-26 Score=248.44 Aligned_cols=256 Identities=13% Similarity=0.108 Sum_probs=210.4
Q ss_pred CEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEE-EEEeCC
Q 005277 364 SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFI-LSSSAD 442 (704)
Q Consensus 364 ~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l-~s~s~D 442 (704)
.++++|+.|+.|++||+.+ ......+.+|. .+.+++|+|++++| ++++.|
T Consensus 3 ~l~vs~~~d~~v~v~d~~~----------------------------~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d 53 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTS----------------------------NKVTATIPVGS-NPMGAVISPDGTKVYVANAHS 53 (391)
T ss_dssp EEEEEETTTTEEEEEETTT----------------------------TEEEEEEECSS-SEEEEEECTTSSEEEEEEGGG
T ss_pred EEEEEcCCCCEEEEEECCC----------------------------CeEEEEeecCC-CcceEEECCCCCEEEEECCCC
Confidence 4688899999999999875 22334445554 58999999999987 577799
Q ss_pred CeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEe-CCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEE-
Q 005277 443 TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI- 520 (704)
Q Consensus 443 g~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs-~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l- 520 (704)
++|++||+.+++.+..+..+. .+.+++|+|+++++++++ .++.|++||+.+++.+..+..+ ..+.+++|+|+++++
T Consensus 54 ~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~ 131 (391)
T 1l0q_A 54 NDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLY 131 (391)
T ss_dssp TEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEE
T ss_pred CeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEE
Confidence 999999999999988887665 899999999999876554 6799999999999888887754 578999999999988
Q ss_pred EEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEE-EEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeee
Q 005277 521 ATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYM-ASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRF 599 (704)
Q Consensus 521 ~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l-~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~ 599 (704)
++++.++.|++||+.+++.+..+..+ ..+.+++|+|+|++| ++++.++.|++||+++++.+..+. +...+.++.|
T Consensus 132 ~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~-- 207 (391)
T 1l0q_A 132 VTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAV-- 207 (391)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEE--
T ss_pred EEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEE--
Confidence 67778999999999999998888765 457999999999987 577889999999999998887776 4557788888
Q ss_pred eehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEe---CCCcEEEEeCCCCccccccccccCcccccccccc
Q 005277 600 LLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGS---ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTL 676 (704)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs---~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~ 676 (704)
+|++++|++++ .++.|++||+.++... ..+
T Consensus 208 --------------------------------~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~---------------~~~ 240 (391)
T 1l0q_A 208 --------------------------------NPEGTKAYVTNVDKYFNTVSMIDTGTNKIT---------------ARI 240 (391)
T ss_dssp --------------------------------CTTSSEEEEEEECSSCCEEEEEETTTTEEE---------------EEE
T ss_pred --------------------------------CCCCCEEEEEecCcCCCcEEEEECCCCeEE---------------EEE
Confidence 99999998888 6899999999876532 233
Q ss_pred CCCCcCeEEEEEccCCcEE-EEeecCC
Q 005277 677 PTKSTPVYSLQFSRRNLLF-AAGALSK 702 (704)
Q Consensus 677 ~~~~~~V~~l~fs~~g~~L-a~gs~dg 702 (704)
..+ ..+.+++|+|+|..| ++++.|+
T Consensus 241 ~~~-~~~~~~~~s~dg~~l~~s~~~d~ 266 (391)
T 1l0q_A 241 PVG-PDPAGIAVTPDGKKVYVALSFXN 266 (391)
T ss_dssp ECC-SSEEEEEECTTSSEEEEEETTTT
T ss_pred ecC-CCccEEEEccCCCEEEEEcCCCC
Confidence 333 347899999999877 5656665
No 127
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=1.2e-25 Score=245.52 Aligned_cols=259 Identities=12% Similarity=0.111 Sum_probs=214.8
Q ss_pred CeEeecCCCCCCeEEE----EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCccccc
Q 005277 330 NRVHLSSAALPSVSFY----TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII 405 (704)
Q Consensus 330 ~~~~l~~~~~p~~~~~----~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (704)
..+++|+......... .+.+|.+.|.+++|++++.++++++.|+.|++||+.+
T Consensus 144 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~----------------------- 200 (433)
T 3bws_A 144 EGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKT----------------------- 200 (433)
T ss_dssp SSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTT-----------------------
T ss_pred CeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCC-----------------------
Confidence 3577776554433221 2346778999999999999999999999999999875
Q ss_pred CCCCCccceeeccCCccCeEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEe--
Q 005277 406 GPNGRKRSYTLYQGHSGPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-- 482 (704)
Q Consensus 406 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs-- 482 (704)
......+..|...+.+++|+|++++++ +++.|+.|++||+.+++.+..+..+ ..+.+++|+|+++++++++
T Consensus 201 -----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~ 274 (433)
T 3bws_A 201 -----LAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFS 274 (433)
T ss_dssp -----CCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEE
T ss_pred -----ceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECC
Confidence 223445557889999999999999885 5558999999999999888877755 4589999999999999988
Q ss_pred ------CCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEE-EEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEE
Q 005277 483 ------HDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI-ATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAM 555 (704)
Q Consensus 483 ------~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l-~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~ 555 (704)
.||.|++||+.+++.+..+ .|...+.+++|+|+++.+ ++++.++.|++||+.+++.+..+. +...+.+++|
T Consensus 275 ~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~ 352 (433)
T 3bws_A 275 ASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIAL 352 (433)
T ss_dssp SCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEE
T ss_pred CCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEE
Confidence 4889999999988777665 355688999999999755 566889999999999999888775 6778999999
Q ss_pred ecCCCEEEEEeC---------------CCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceee
Q 005277 556 SPDGRYMASGDE---------------DGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLF 620 (704)
Q Consensus 556 spdg~~l~sg~~---------------dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (704)
+|+|++|++++. ||.|++||+.+++.+..+..+ ..+.++.|
T Consensus 353 s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~----------------------- 408 (433)
T 3bws_A 353 SPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDV----------------------- 408 (433)
T ss_dssp CTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEE-----------------------
T ss_pred cCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEE-----------------------
Confidence 999999988876 579999999999998888764 46788888
Q ss_pred eeeeEEeecccCCCCCEEEEEeC-CCcEEEEeCCC
Q 005277 621 YSLTIIYFGCASCEGSLLASGSA-DCTVKLWDVTT 654 (704)
Q Consensus 621 ~~~~~~~~~~~s~~g~~lasgs~-Dg~V~iWd~~~ 654 (704)
+|+|++|++++. |+.|++|++..
T Consensus 409 -----------s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 409 -----------SPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp -----------CTTSCEEEEEETTTTEEEEEEETT
T ss_pred -----------cCCCCEEEEEECCCCeEEEEEecC
Confidence 999999988875 99999999863
No 128
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.95 E-value=3.3e-26 Score=244.19 Aligned_cols=229 Identities=13% Similarity=0.115 Sum_probs=183.4
Q ss_pred eeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEE-EEEeCCCeEEEEEC
Q 005277 414 YTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF-ASSSHDRTARIWSM 492 (704)
Q Consensus 414 ~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l-~sgs~dg~i~lwd~ 492 (704)
.....+|.++|++++|+|++++|++|+.+| +++|++.++........ ..+..+++.++++++ ++++.|++|++||+
T Consensus 12 ~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~ 88 (355)
T 3vu4_A 12 IVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGVKEVVHIWDD 88 (355)
T ss_dssp -------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSSTTEEEEEET
T ss_pred ccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECCccEEEEEEC
Confidence 344578999999999999999999998775 78999987766654432 257889999988887 56778899999999
Q ss_pred CCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC-cEEEEeecCCCCEEEEEEecCCCEEEE--EeCCC
Q 005277 493 DRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSPDGRYMAS--GDEDG 569 (704)
Q Consensus 493 ~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~-~~~~~~~~h~~~i~~l~~spdg~~l~s--g~~dg 569 (704)
.+++.+..+. +...|.+++|+++. ++++ .++.|++||+.++ +.+..+.. +...+++++ .++++ |+.||
T Consensus 89 ~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g 159 (355)
T 3vu4_A 89 VKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLG 159 (355)
T ss_dssp TTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTT
T ss_pred CCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCc
Confidence 9999988887 66799999998764 4444 4789999999988 66655544 455667777 56665 58999
Q ss_pred eEEEEeCCCCe----------------eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCC
Q 005277 570 TIMMWDLASGR----------------CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASC 633 (704)
Q Consensus 570 ~I~iwdl~~~~----------------~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 633 (704)
.|++||+.++. .+..+.+|...|.+++| +|
T Consensus 160 ~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~----------------------------------s~ 205 (355)
T 3vu4_A 160 QIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRL----------------------------------NR 205 (355)
T ss_dssp CEEEEECCC------------------CCEEECCCSSCEEEEEE----------------------------------CT
T ss_pred EEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEE----------------------------------CC
Confidence 99999999875 27788999999999999 99
Q ss_pred CCCEEEEEeCCCc-EEEEeCCCCccccccccccCccccccccccC-C-CCcCeEEEEEccCCcEEEEeecCCC
Q 005277 634 EGSLLASGSADCT-VKLWDVTTSTKVLKTEEKSGTNRLRSLKTLP-T-KSTPVYSLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 634 ~g~~lasgs~Dg~-V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~-~-~~~~V~~l~fs~~g~~La~gs~dgt 703 (704)
+|++|++|+.||+ |+|||+.++.. +..+. + |..+|.+++|+|+|.+|++|+.|++
T Consensus 206 ~g~~l~s~s~d~~~v~iwd~~~~~~---------------~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~ 263 (355)
T 3vu4_A 206 KSDMVATCSQDGTIIRVFKTEDGVL---------------VREFRRGLDRADVVDMKWSTDGSKLAVVSDKWT 263 (355)
T ss_dssp TSSEEEEEETTCSEEEEEETTTCCE---------------EEEEECTTCCSCEEEEEECTTSCEEEEEETTCE
T ss_pred CCCEEEEEeCCCCEEEEEECCCCcE---------------EEEEEcCCCCCcEEEEEECCCCCEEEEEECCCE
Confidence 9999999999998 99999998754 34444 3 8899999999999999999999975
No 129
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=1.4e-25 Score=231.58 Aligned_cols=229 Identities=11% Similarity=0.143 Sum_probs=174.0
Q ss_pred CeEEEEEcCCCC---EEEEEeCCCeEEEEeCCCC---ceeEEeecCCcC-------------------------eeEEEE
Q 005277 423 PVYSASFSPLGD---FILSSSADTTIRLWSTKLN---ANLVCYKGHNYP-------------------------VWDVQF 471 (704)
Q Consensus 423 ~V~~l~~sp~~~---~l~s~s~Dg~I~lwd~~~~---~~~~~~~~h~~~-------------------------V~~v~~ 471 (704)
.+.++.|-..+- .++++++ .+|++|+...+ +.+.++..|..+ |+.+++
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~ 119 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFC 119 (356)
T ss_dssp EEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC
T ss_pred EEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEE
Confidence 356677755443 5777776 58999999988 777777777654 556667
Q ss_pred cCC----CCEEEEEeC--------------------CCeEEEEEC-CCCceeEEeccCCCCeeEEEEcC---CCCEEEEE
Q 005277 472 NPQ----GHYFASSSH--------------------DRTARIWSM-DRIQPLRIMAGHLSDVDCVRWHI---NCNYIATG 523 (704)
Q Consensus 472 sp~----~~~l~sgs~--------------------dg~i~lwd~-~~~~~~~~~~~~~~~V~~v~~~p---~~~~l~tg 523 (704)
+|+ ++++++++. |+.|++|++ .+++.+..+.+|...+..++|+| ++.+|++|
T Consensus 120 spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSg 199 (356)
T 2w18_A 120 SSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGT 199 (356)
T ss_dssp ------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEE
T ss_pred CCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEe
Confidence 777 777777653 888999998 44777777888988999999998 77999999
Q ss_pred ECCCcEEEEeCCCCcEEEEeecCC---CCEEEEEEecCCCEE------------EEEeCCCeEEEEeCCCCeeeeee---
Q 005277 524 SSDKTVRLWDVSSGECVRIFIGHR---SMILSLAMSPDGRYM------------ASGDEDGTIMMWDLASGRCVTPL--- 585 (704)
Q Consensus 524 s~dg~I~iwd~~~~~~~~~~~~h~---~~i~~l~~spdg~~l------------~sg~~dg~I~iwdl~~~~~~~~~--- 585 (704)
+.|++|+|||+.+|++++++.+|. ..+.+++|+|+|.++ ++|+.|++|++||..+++.+..+
T Consensus 200 S~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~ 279 (356)
T 2w18_A 200 TIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYC 279 (356)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEEC
T ss_pred cCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEee
Confidence 999999999999999999998754 367888999999986 56888999999999999887655
Q ss_pred --cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccccccc
Q 005277 586 --MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEE 663 (704)
Q Consensus 586 --~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~ 663 (704)
.+|...+.+. +.++.++++|+.||+|+|||+.+++.
T Consensus 280 ~p~Gh~~~~lsg------------------------------------~~sg~~lASgS~DgTIkIWDl~tGk~------ 317 (356)
T 2w18_A 280 LPPGQAGRFLEG------------------------------------DVKDHCAAAILTSGTIAIWDLLLGQC------ 317 (356)
T ss_dssp CCTTCCCCEEEE------------------------------------EEETTEEEEEETTSCEEEEETTTCSE------
T ss_pred ccCCCcceeEcc------------------------------------ccCCCEEEEEcCCCcEEEEECCCCcE------
Confidence 3555443322 23478999999999999999998754
Q ss_pred ccCccccccccccCCCCcCeE-EEEEccCCcEEEEeecCCC
Q 005277 664 KSGTNRLRSLKTLPTKSTPVY-SLQFSRRNLLFAAGALSKT 703 (704)
Q Consensus 664 ~~~~~~~~~l~~~~~~~~~V~-~l~fs~~g~~La~gs~dgt 703 (704)
+.++.+|...+. .++|||||++|++|+.|+|
T Consensus 318 ---------l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~T 349 (356)
T 2w18_A 318 ---------TALLPPVSDQHWSFVKWSGTDSHLLAGQKDGN 349 (356)
T ss_dssp ---------EEEECCC--CCCCEEEECSSSSEEEEECTTSC
T ss_pred ---------EEEecCCCCCeEEEEEECCCCCEEEEEECCCc
Confidence 456666766554 6899999999999999986
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=2.4e-25 Score=242.69 Aligned_cols=278 Identities=17% Similarity=0.116 Sum_probs=220.8
Q ss_pred eEeecCC--CCCCeE-EEEEeeCCCCEEEEEEcC--------------CCCEEEEEeCC------CcEEEEEcccCCccc
Q 005277 331 RVHLSSA--ALPSVS-FYTFINTHNGLNCASISQ--------------DGSLVAGGFSD------SSLKVWDMAKLGQQA 387 (704)
Q Consensus 331 ~~~l~~~--~~p~~~-~~~~~~~~~~V~~~~fs~--------------dg~~lasg~~d------g~I~iwdl~~~~~~~ 387 (704)
.+++|+. ...... ..++..|...+.++++++ .+..++.++.+ +.|++||+..
T Consensus 94 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g----- 168 (415)
T 2hqs_A 94 AYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG----- 168 (415)
T ss_dssp EEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-----
T ss_pred EEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-----
Confidence 6788876 444322 245778888888777765 25666666654 7999999864
Q ss_pred cccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCC---eEEEEeCCCCceeEEeecCCc
Q 005277 388 VSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADT---TIRLWSTKLNANLVCYKGHNY 464 (704)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg---~I~lwd~~~~~~~~~~~~h~~ 464 (704)
.....+.+|...|.+++|+|++++|++++.++ .|++||+.+++.. .+..|..
T Consensus 169 ------------------------~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~ 223 (415)
T 2hqs_A 169 ------------------------YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPR 223 (415)
T ss_dssp ------------------------CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSS
T ss_pred ------------------------CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCC
Confidence 12345567889999999999999999999875 9999999988765 5667888
Q ss_pred CeeEEEEcCCCCEEE-EEeCCCe--EEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEEC-CC--cEEEEeCCCCc
Q 005277 465 PVWDVQFNPQGHYFA-SSSHDRT--ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-DK--TVRLWDVSSGE 538 (704)
Q Consensus 465 ~V~~v~~sp~~~~l~-sgs~dg~--i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~-dg--~I~iwd~~~~~ 538 (704)
.+.+++|+|+|++++ +++.++. |++||+.+++. ..+..|...+.+++|+|+|++|++++. ++ .|++||+.+++
T Consensus 224 ~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~ 302 (415)
T 2hqs_A 224 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA 302 (415)
T ss_dssp CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred cccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC
Confidence 999999999999888 6666554 99999988765 566778889999999999999998886 44 68888998887
Q ss_pred EEEEeecCCCCEEEEEEecCCCEEEEEeCC---CeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccc
Q 005277 539 CVRIFIGHRSMILSLAMSPDGRYMASGDED---GTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVS 615 (704)
Q Consensus 539 ~~~~~~~h~~~i~~l~~spdg~~l~sg~~d---g~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~ 615 (704)
.. .+..+...+.+++|+|+|++|++++.+ +.|.+||+.+++.. .+..|. .+.++.|
T Consensus 303 ~~-~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~------------------ 361 (415)
T 2hqs_A 303 PQ-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSL------------------ 361 (415)
T ss_dssp CE-ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEE------------------
T ss_pred EE-EEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEE------------------
Confidence 53 455677889999999999999988764 58999999988764 455554 7888888
Q ss_pred cceeeeeeeEEeecccCCCCCEEEEEeCCC---cEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCC
Q 005277 616 TGFLFYSLTIIYFGCASCEGSLLASGSADC---TVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRN 692 (704)
Q Consensus 616 ~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg---~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g 692 (704)
+|+|++|++++.++ .|++||+..+. ...+..+.+.|.+++|+|.-
T Consensus 362 ----------------spdg~~l~~~s~~~~~~~l~~~d~~g~~----------------~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 362 ----------------APNGTMVIYSSSQGMGSVLNLVSTDGRF----------------KARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp ----------------CTTSSEEEEEEEETTEEEEEEEETTSCC----------------EEECCCSSSEEEEEEECCCC
T ss_pred ----------------cCCCCEEEEEEcCCCccEEEEEECCCCc----------------EEEeeCCCCCCcCCcccccc
Confidence 99999999988877 79999987532 45677888999999999964
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=2.2e-24 Score=235.13 Aligned_cols=269 Identities=14% Similarity=0.106 Sum_probs=208.5
Q ss_pred CEEEEEEcCCC-CEEEEEe----CCC----cEEEEEc--ccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCc
Q 005277 353 GLNCASISQDG-SLVAGGF----SDS----SLKVWDM--AKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS 421 (704)
Q Consensus 353 ~V~~~~fs~dg-~~lasg~----~dg----~I~iwdl--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 421 (704)
.+...+|++.| .++++|+ .+| .|+|||+ .+... .....+.+|.
T Consensus 64 ~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~--------------------------~~~~~~~~~~ 117 (415)
T 2hqs_A 64 EVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTV--------------------------LAQNSYKVNK 117 (415)
T ss_dssp GCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCE--------------------------EEEEEEEECG
T ss_pred CcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCE--------------------------EeeeEEEcCh
Confidence 45666777775 4666776 467 8999998 54211 1113456677
Q ss_pred cCeEEEEEcC--------------CCCEEEEEeCC------CeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEE
Q 005277 422 GPVYSASFSP--------------LGDFILSSSAD------TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS 481 (704)
Q Consensus 422 ~~V~~l~~sp--------------~~~~l~s~s~D------g~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sg 481 (704)
..+..+++++ .+..++.++.+ ++|++||+. +.....+.+|...|.+++|+|+|++++++
T Consensus 118 ~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~ 196 (415)
T 2hqs_A 118 QWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYV 196 (415)
T ss_dssp GGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEE
Confidence 7776666654 25566655544 799999998 55677788899999999999999999999
Q ss_pred eCCC---eEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEE-EEECCCc--EEEEeCCCCcEEEEeecCCCCEEEEEE
Q 005277 482 SHDR---TARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIA-TGSSDKT--VRLWDVSSGECVRIFIGHRSMILSLAM 555 (704)
Q Consensus 482 s~dg---~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~-tgs~dg~--I~iwd~~~~~~~~~~~~h~~~i~~l~~ 555 (704)
+.++ .|++||+++++.. .+..|...+.+++|+|+|++|+ +++.++. |++||+.+++. ..+..|...+.+++|
T Consensus 197 s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~ 274 (415)
T 2hqs_A 197 TFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTW 274 (415)
T ss_dssp ECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEE
T ss_pred EecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEE
Confidence 9875 9999999988775 4566888999999999999888 5666655 99999998876 456788889999999
Q ss_pred ecCCCEEEEEeC-CC--eEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccC
Q 005277 556 SPDGRYMASGDE-DG--TIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCAS 632 (704)
Q Consensus 556 spdg~~l~sg~~-dg--~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 632 (704)
+|||++|++++. +| .|.+||+.+++. ..+..|...+.++.| +
T Consensus 275 spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~----------------------------------s 319 (415)
T 2hqs_A 275 FPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADV----------------------------------S 319 (415)
T ss_dssp CTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEE----------------------------------C
T ss_pred CCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEE----------------------------------C
Confidence 999999998876 44 688889988764 445567778888888 9
Q ss_pred CCCCEEEEEeCC---CcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277 633 CEGSLLASGSAD---CTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 702 (704)
Q Consensus 633 ~~g~~lasgs~D---g~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg 702 (704)
|+|++|++++.+ +.|++||+.++.. ..+..+. .+.+++|+|+|.+|++++.++
T Consensus 320 pdG~~l~~~~~~~g~~~i~~~d~~~~~~----------------~~l~~~~-~~~~~~~spdg~~l~~~s~~~ 375 (415)
T 2hqs_A 320 SDGKFMVMVSSNGGQQHIAKQDLATGGV----------------QVLSSTF-LDETPSLAPNGTMVIYSSSQG 375 (415)
T ss_dssp TTSSEEEEEEECSSCEEEEEEETTTCCE----------------EECCCSS-SCEEEEECTTSSEEEEEEEET
T ss_pred CCCCEEEEEECcCCceEEEEEECCCCCE----------------EEecCCC-CcCCeEEcCCCCEEEEEEcCC
Confidence 999999888764 5899999987643 1222333 789999999999999988765
No 132
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.93 E-value=2.3e-24 Score=221.02 Aligned_cols=256 Identities=18% Similarity=0.197 Sum_probs=199.6
Q ss_pred EEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEE
Q 005277 368 GGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRL 447 (704)
Q Consensus 368 sg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~l 447 (704)
.++.|+.|++||+.+. ....+..|.+.|.+++|+|++++|++++ ++.|++
T Consensus 17 ~~~~~~~i~~~d~~~~-----------------------------~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~ 66 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTR-----------------------------KMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYR 66 (297)
T ss_dssp -CCCCEEEEEEETTTT-----------------------------EEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEE
T ss_pred CCCcceeEEEEeCCCC-----------------------------ceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEE
Confidence 3457899999998751 1233455888999999999999999887 789999
Q ss_pred EeCCC-CceeEEeecC-CcCeeEEEEcCCCCEEEEEe--CCCeEEEEE--CCCCceeEEeccCCCCeeEEEEcCCCCEEE
Q 005277 448 WSTKL-NANLVCYKGH-NYPVWDVQFNPQGHYFASSS--HDRTARIWS--MDRIQPLRIMAGHLSDVDCVRWHINCNYIA 521 (704)
Q Consensus 448 wd~~~-~~~~~~~~~h-~~~V~~v~~sp~~~~l~sgs--~dg~i~lwd--~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~ 521 (704)
||+.+ ++.......+ ...+.+++|+|+++++++++ .++...||. ..++. ...+..+ ..+.+++|+|++++|+
T Consensus 67 ~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~ 144 (297)
T 2ojh_A 67 LSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFT 144 (297)
T ss_dssp EESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEE
T ss_pred EeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEE
Confidence 99998 7777666666 46789999999999999998 334555555 44444 3444433 3588999999999887
Q ss_pred -EEECCCcEEEEeCC-CCcEEEEeecCCCCEEEEEEecCCCEEEEEe-CCCeEEEEeCC-CCeeeeeecCCCceeeeeee
Q 005277 522 -TGSSDKTVRLWDVS-SGECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLA-SGRCVTPLMGHTSCVWTLAY 597 (704)
Q Consensus 522 -tgs~dg~I~iwd~~-~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~-~dg~I~iwdl~-~~~~~~~~~~h~~~V~sl~~ 597 (704)
+++.++.+++|++. .+.....+..+...+.+++|+|+|++|++++ .++.+.+|++. .+..+..+..|...+.++.|
T Consensus 145 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (297)
T 2ojh_A 145 YCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHP 224 (297)
T ss_dssp EEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEE
T ss_pred EEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEE
Confidence 67789999999863 2333455667888999999999999888766 58999999986 56667778888888889999
Q ss_pred eeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCC-----------CcEEEEeCCCCccccccccccC
Q 005277 598 RFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSAD-----------CTVKLWDVTTSTKVLKTEEKSG 666 (704)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~D-----------g~V~iWd~~~~~~~~~~~~~~~ 666 (704)
+|+|++|++++.+ +.|++||+.++..
T Consensus 225 ----------------------------------s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~--------- 261 (297)
T 2ojh_A 225 ----------------------------------SPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV--------- 261 (297)
T ss_dssp ----------------------------------CTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC---------
T ss_pred ----------------------------------CCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc---------
Confidence 9999999888876 5699999987643
Q ss_pred ccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277 667 TNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 702 (704)
Q Consensus 667 ~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg 702 (704)
..+..+..+...|.+++|+|+|..|++++.+.
T Consensus 262 ----~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 262 ----ETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp ----EEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred ----eeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 22334446677899999999999999888764
No 133
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=5.8e-24 Score=249.19 Aligned_cols=293 Identities=14% Similarity=0.107 Sum_probs=211.1
Q ss_pred CCCEEEEEEcCCCCEEEEEeC-CC-----cEEEEEcccCCccccccccCCCCCCCCcccccCCC-CCccceeeccCCccC
Q 005277 351 HNGLNCASISQDGSLVAGGFS-DS-----SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN-GRKRSYTLYQGHSGP 423 (704)
Q Consensus 351 ~~~V~~~~fs~dg~~lasg~~-dg-----~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~ 423 (704)
...+.+++|||||++|++++. || .|.+||+.+............. +........ ...+....+. ....
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~ 110 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVL----PGTETLSDEEKARRERQRIA-AMTG 110 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC-------------------------CCEE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcc----cccccccchhhhhhhhhhhc-cccC
Confidence 456899999999999999998 88 8999999874432221110000 000000000 0000000000 1245
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe
Q 005277 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM 501 (704)
Q Consensus 424 V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~ 501 (704)
|.+++|+|||++|++++. +.|++||+.++. ....+..|...+.+++|+|+|+++++++ ++.|++||+.+++..+..
T Consensus 111 v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~ 188 (741)
T 2ecf_A 111 IVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLT 188 (741)
T ss_dssp SCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECC
T ss_pred cceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEec
Confidence 889999999999998886 899999999873 4556677888999999999999999987 469999999988766655
Q ss_pred ccCCCC----------------eeEEEEcCCCCEEEEEECCC---------------------------------cEEEE
Q 005277 502 AGHLSD----------------VDCVRWHINCNYIATGSSDK---------------------------------TVRLW 532 (704)
Q Consensus 502 ~~~~~~----------------V~~v~~~p~~~~l~tgs~dg---------------------------------~I~iw 532 (704)
..+... +.+++|+|||++|++++.|+ .|++|
T Consensus 189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~ 268 (741)
T 2ecf_A 189 ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI 268 (741)
T ss_dssp CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred cCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence 444332 47899999999999988765 78999
Q ss_pred eCCC-CcEEEEee--cCCCCEEEEEEecCCCEEEEEeC-----CCeEEEEeCCCCeeeeeecCCCc----eeeeeeeeee
Q 005277 533 DVSS-GECVRIFI--GHRSMILSLAMSPDGRYMASGDE-----DGTIMMWDLASGRCVTPLMGHTS----CVWTLAYRFL 600 (704)
Q Consensus 533 d~~~-~~~~~~~~--~h~~~i~~l~~spdg~~l~sg~~-----dg~I~iwdl~~~~~~~~~~~h~~----~V~sl~~~~~ 600 (704)
|+.+ ++...... .|...+.+++| |||++|++++. ++.|++||+.+++....+..+.. .+.++.|
T Consensus 269 d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~--- 344 (741)
T 2ecf_A 269 SPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRF--- 344 (741)
T ss_dssp CSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEE---
T ss_pred ECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEE---
Confidence 9998 87765543 37778999999 99999997654 57899999999987766655442 3457777
Q ss_pred ehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCC
Q 005277 601 LLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS 680 (704)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 680 (704)
+|+|+++++++.||.++||.+..... +..+..+.
T Consensus 345 -------------------------------spdg~~~~~~~~~g~~~l~~~~~~~~---------------~~~l~~~~ 378 (741)
T 2ecf_A 345 -------------------------------LDDGSILWSSERTGFQHLYRIDSKGK---------------AAALTHGN 378 (741)
T ss_dssp -------------------------------CTTSCEEEEECTTSSCEEEEECSSSC---------------EEESCCSS
T ss_pred -------------------------------CCCCeEEEEecCCCccEEEEEcCCCC---------------eeeeeecc
Confidence 99999999999999999988763211 22344556
Q ss_pred cCeEEE-EEccCCcEEEEeec
Q 005277 681 TPVYSL-QFSRRNLLFAAGAL 700 (704)
Q Consensus 681 ~~V~~l-~fs~~g~~La~gs~ 700 (704)
..|..+ .|+|+|..|++.+.
T Consensus 379 ~~v~~~~~~s~dg~~l~~~~~ 399 (741)
T 2ecf_A 379 WSVDELLAVDEKAGLAYFRAG 399 (741)
T ss_dssp SCEEEEEEEETTTTEEEEEEC
T ss_pred eEEEeEeEEeCCCCEEEEEEe
Confidence 678887 59999987755443
No 134
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.92 E-value=1.2e-22 Score=228.60 Aligned_cols=299 Identities=11% Similarity=0.086 Sum_probs=226.2
Q ss_pred cCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEc--ccCCccccccccCCCCCCCCcccccC
Q 005277 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDM--AKLGQQAVSSGLQGENDTTPREDIIG 406 (704)
Q Consensus 329 ~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl--~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (704)
...+.+++...... ..++..+. .+.+++|||||++|++++.|+.|.+||+ .+
T Consensus 158 d~~V~v~D~~t~~~-~~~i~~g~-~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t------------------------ 211 (543)
T 1nir_A 158 AGQIALVDGDSKKI-VKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKE------------------------ 211 (543)
T ss_dssp GTEEEEEETTTCCE-EEEEECST-TEEEEEECTTSCEEEEEETTSEEEEEETTSSS------------------------
T ss_pred CCeEEEEECCCceE-EEEEecCc-ccceEEECCCCCEEEEECCCCeEEEEECcCCC------------------------
Confidence 45677776554433 23333232 3999999999999999999999999998 33
Q ss_pred CCCCccceeeccCCccCeEEEEEcC----CCCEEEEEe-CCCeEEEEeCCCCceeEEeecC-----------CcCeeEEE
Q 005277 407 PNGRKRSYTLYQGHSGPVYSASFSP----LGDFILSSS-ADTTIRLWSTKLNANLVCYKGH-----------NYPVWDVQ 470 (704)
Q Consensus 407 ~~~~~~~~~~~~~h~~~V~~l~~sp----~~~~l~s~s-~Dg~I~lwd~~~~~~~~~~~~h-----------~~~V~~v~ 470 (704)
......+. +...+.+++|+| ++++|++++ .+++|.+||..+++++..+..+ ...+.++.
T Consensus 212 ----~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~ 286 (543)
T 1nir_A 212 ----PTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAII 286 (543)
T ss_dssp ----CEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEE
T ss_pred ----CcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEE
Confidence 12223333 334579999999 999999887 4899999999999998887642 23688999
Q ss_pred EcCCCCE-EEEEeCCCeEEEEECCCCceeE--EeccCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCcEEEEeec-
Q 005277 471 FNPQGHY-FASSSHDRTARIWSMDRIQPLR--IMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIG- 545 (704)
Q Consensus 471 ~sp~~~~-l~sgs~dg~i~lwd~~~~~~~~--~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~- 545 (704)
++|++.. +++...++.|.+||+.+.+.+. .+ .+...+..+.|+|+++++++++ .+++|.+||+.+++++..+..
T Consensus 287 ~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g 365 (543)
T 1nir_A 287 ASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVG 365 (543)
T ss_dssp ECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS
T ss_pred ECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccC
Confidence 9997655 5666788999999998766544 33 3556788999999999887665 588999999999999888764
Q ss_pred ---CCCCEEEEEEecC-CCEEEEEe-CCCeEEEEeCCC-------CeeeeeecCCCceeeeeeeeeeehccccccccccc
Q 005277 546 ---HRSMILSLAMSPD-GRYMASGD-EDGTIMMWDLAS-------GRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDK 613 (704)
Q Consensus 546 ---h~~~i~~l~~spd-g~~l~sg~-~dg~I~iwdl~~-------~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~ 613 (704)
|.+....+ ++|+ |..++++. .|++|.+||+.+ ++++.++.+|.+.+..+.+
T Consensus 366 ~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~---------------- 428 (543)
T 1nir_A 366 KTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKT---------------- 428 (543)
T ss_dssp SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEEC----------------
T ss_pred CCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEc----------------
Confidence 55444333 5777 66667765 689999999998 8999999999888888888
Q ss_pred cccceeeeeeeEEeecccCCCCCEEEEEe-------CCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEE
Q 005277 614 VSTGFLFYSLTIIYFGCASCEGSLLASGS-------ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSL 686 (704)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~s~~g~~lasgs-------~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l 686 (704)
+|+|++|++++ .+++|.|||+.+.+....... ......+..+...|..+
T Consensus 429 ------------------~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~------v~~~~~~~~~~~~~~~~ 484 (543)
T 1nir_A 429 ------------------HPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLP------IAEWADLGEGAKRVVQP 484 (543)
T ss_dssp ------------------CTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEEC------HHHHHCCCSSCCEEEEE
T ss_pred ------------------CCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEee------chhhcccCCCCCceEec
Confidence 99999999987 378999999998765311100 00011234556789999
Q ss_pred EEccCCcEEEEeec
Q 005277 687 QFSRRNLLFAAGAL 700 (704)
Q Consensus 687 ~fs~~g~~La~gs~ 700 (704)
.|+|+|..|.++..
T Consensus 485 ~~~~~g~~~~~s~~ 498 (543)
T 1nir_A 485 EYNKRGDEVWFSVW 498 (543)
T ss_dssp EECSSSSEEEEEEE
T ss_pred cCCCCCCEEEEEee
Confidence 99999999987754
No 135
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.92 E-value=2.1e-22 Score=213.13 Aligned_cols=273 Identities=10% Similarity=0.037 Sum_probs=213.1
Q ss_pred eCCCCEEEEEEcCCCCEEEEEeC-------CCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCc
Q 005277 349 NTHNGLNCASISQDGSLVAGGFS-------DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS 421 (704)
Q Consensus 349 ~~~~~V~~~~fs~dg~~lasg~~-------dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 421 (704)
.....+..++|+|+|+++++++. ++.|.+||..+.. ....+. +.
T Consensus 38 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~----------------------------~~~~~~-~~ 88 (353)
T 3vgz_A 38 AVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLE----------------------------VTQAIH-ND 88 (353)
T ss_dssp EEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCC----------------------------EEEEEE-ES
T ss_pred hhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCe----------------------------EEEEEe-cC
Confidence 44567899999999998888874 5679999987522 111111 12
Q ss_pred cCeEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeecCCcC---------eeEEEEcCCCCEEEEEe--CCCeEEE
Q 005277 422 GPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYP---------VWDVQFNPQGHYFASSS--HDRTARI 489 (704)
Q Consensus 422 ~~V~~l~~sp~~~~l~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~---------V~~v~~sp~~~~l~sgs--~dg~i~l 489 (704)
..+.+++|+|++++++ ++..++.|.+||..+++.+..+..+... +.++.|+|+++++++++ .++.|.+
T Consensus 89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~ 168 (353)
T 3vgz_A 89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWV 168 (353)
T ss_dssp SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEE
T ss_pred CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEE
Confidence 3467899999999665 5566799999999999988887765422 68899999999877776 4789999
Q ss_pred EECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeec----CCCCEEEEEEecCCCEEEEE
Q 005277 490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG----HRSMILSLAMSPDGRYMASG 565 (704)
Q Consensus 490 wd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~----h~~~i~~l~~spdg~~l~sg 565 (704)
||..+++.+..+..+...+.+++|+|+++++++++.++.|.+||+.+++.+..+.. +...+.+++|+|+|++++++
T Consensus 169 ~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 248 (353)
T 3vgz_A 169 VDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFIT 248 (353)
T ss_dssp EETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEE
T ss_pred EcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEE
Confidence 99999998888876666789999999999999999999999999999998877764 55678899999999987776
Q ss_pred eC-CCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEe-C
Q 005277 566 DE-DGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGS-A 643 (704)
Q Consensus 566 ~~-dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs-~ 643 (704)
+. ++.|.+||+.+++.+..+..... ..+.| +++|+++++++ .
T Consensus 249 ~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~----------------------------------s~dg~~l~v~~~~ 292 (353)
T 3vgz_A 249 DSKAAEVLVVDTRNGNILAKVAAPES--LAVLF----------------------------------NPARNEAYVTHRQ 292 (353)
T ss_dssp ESSSSEEEEEETTTCCEEEEEECSSC--CCEEE----------------------------------ETTTTEEEEEETT
T ss_pred eCCCCEEEEEECCCCcEEEEEEcCCC--ceEEE----------------------------------CCCCCEEEEEECC
Confidence 65 49999999999988877764432 45666 89998665554 7
Q ss_pred CCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277 644 DCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 702 (704)
Q Consensus 644 Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg 702 (704)
++.|.+||..+++.. ..+.. ...+.+++|+|+|++|+++..++
T Consensus 293 ~~~v~~~d~~~~~~~---------------~~~~~-~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 293 AGKVSVIDAKSYKVV---------------KTFDT-PTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp TTEEEEEETTTTEEE---------------EEEEC-CSEEEEEEECTTSCEEEEEEECC
T ss_pred CCeEEEEECCCCeEE---------------EEEec-CCCCCeEEEcCCCCEEEEEEccc
Confidence 899999999886543 22222 23578999999999777766553
No 136
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.91 E-value=5.4e-22 Score=208.61 Aligned_cols=290 Identities=9% Similarity=0.113 Sum_probs=200.2
Q ss_pred cCeEeecCCC-CCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCC-CcEEEEEcccCCccccccccCCCCCCCCcccccC
Q 005277 329 RNRVHLSSAA-LPSVSFYTFINTHNGLNCASISQDGSLVAGGFSD-SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG 406 (704)
Q Consensus 329 ~~~~~l~~~~-~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~d-g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (704)
...+.+|... ...........+...+.+++|+|+|++|++++.+ +.|.+|++....
T Consensus 14 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~---------------------- 71 (343)
T 1ri6_A 14 SQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD---------------------- 71 (343)
T ss_dssp GTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTT----------------------
T ss_pred CCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCC----------------------
Confidence 3466777543 2233344456778889999999999988888886 999999987210
Q ss_pred CCCCccceeeccCCccCeEEEEEcCCCCEEEEEe-CCCeEEEEeCC---CCceeEEeecCCcCeeEEEEcCCCCEEEEEe
Q 005277 407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSS-ADTTIRLWSTK---LNANLVCYKGHNYPVWDVQFNPQGHYFASSS 482 (704)
Q Consensus 407 ~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s-~Dg~I~lwd~~---~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs 482 (704)
+.......+..+. .+.+++|+|++++|++++ .++.|.+||+. .......+..+ ..+.+++|+|+++++++++
T Consensus 72 --~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~ 147 (343)
T 1ri6_A 72 --GALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPA 147 (343)
T ss_dssp --CCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEE
T ss_pred --CceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEec
Confidence 0111222233333 788999999999887665 48899999994 33344444433 4688999999999888887
Q ss_pred -CCCeEEEEECCC-CceeE----Eec-cCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCC--CcE--EEEee----cC
Q 005277 483 -HDRTARIWSMDR-IQPLR----IMA-GHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSS--GEC--VRIFI----GH 546 (704)
Q Consensus 483 -~dg~i~lwd~~~-~~~~~----~~~-~~~~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~~--~~~--~~~~~----~h 546 (704)
.++.|.+||+.+ ++... .+. .....+.+++|+|+++++++++ .++.|.+||+.. +.. ...+. ++
T Consensus 148 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~ 227 (343)
T 1ri6_A 148 LKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENF 227 (343)
T ss_dssp GGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTC
T ss_pred CCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccc
Confidence 899999999987 54432 222 2345788999999999876655 789999999953 433 22222 11
Q ss_pred --CCCEEEEEEecCCCEEEE-EeCCCeEEEEeCC--C--CeeeeeecCCCceeeeeeeeeeehcccccccccccccccee
Q 005277 547 --RSMILSLAMSPDGRYMAS-GDEDGTIMMWDLA--S--GRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFL 619 (704)
Q Consensus 547 --~~~i~~l~~spdg~~l~s-g~~dg~I~iwdl~--~--~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~ 619 (704)
...+.+++|+|+|++|++ +..++.|.+||+. + .+.+..+..+.. +..+.|
T Consensus 228 ~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~---------------------- 284 (343)
T 1ri6_A 228 SDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNV---------------------- 284 (343)
T ss_dssp CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEE----------------------
T ss_pred cccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEE----------------------
Confidence 235778999999998875 4578999999998 2 344555554444 778888
Q ss_pred eeeeeEEeecccCCCCCEEEEEe-CCCcEEEEeCC--CCccccccccccCccccccccccCCCCcCeEEEEEccCCc
Q 005277 620 FYSLTIIYFGCASCEGSLLASGS-ADCTVKLWDVT--TSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL 693 (704)
Q Consensus 620 ~~~~~~~~~~~~s~~g~~lasgs-~Dg~V~iWd~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~ 693 (704)
+|+|++|++++ .++.|.+|++. ++.. ..+..++.. ....+++|.++..
T Consensus 285 ------------s~dg~~l~~~~~~~~~v~v~~~d~~~g~~-------------~~~~~~~~g-~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 285 ------------DHSGKYLIAAGQKSHHISVYEIVGEQGLL-------------HEKGRYAVG-QGPMWVVVNAHEG 335 (343)
T ss_dssp ------------CTTSSEEEEECTTTCEEEEEEEETTTTEE-------------EEEEEEECS-SSCCEEEEEEEC-
T ss_pred ------------CCCCCEEEEecCCCCeEEEEEEcCCCcee-------------eEccccccC-CCCeeEEEEcccC
Confidence 99999888877 68999999665 3321 223344332 3455677776543
No 137
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.91 E-value=8.8e-23 Score=239.15 Aligned_cols=270 Identities=14% Similarity=0.129 Sum_probs=207.5
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCC
Q 005277 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL 432 (704)
Q Consensus 353 ~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 432 (704)
.|.+++|||||++|++++. +.|.+||+.+... .....+..|...+.+++|+||
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~--------------------------~~~~~l~~~~~~~~~~~~SPD 162 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGK--------------------------AAVRQLTHGEGFATDAKLSPK 162 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCST--------------------------TSCCBCCCSSSCEEEEEECTT
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCc--------------------------ceEEEcccCCcccccccCCCC
Confidence 4789999999999999986 9999999875200 012334567788999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEeecCCcC----------------eeEEEEcCCCCEEEEEeCCC-----------
Q 005277 433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYP----------------VWDVQFNPQGHYFASSSHDR----------- 485 (704)
Q Consensus 433 ~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~----------------V~~v~~sp~~~~l~sgs~dg----------- 485 (704)
|++|+.++. +.|++||+.+++.......+... +.+++|+|+|++|++++.|+
T Consensus 163 G~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~ 241 (741)
T 2ecf_A 163 GGFVSFIRG-RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEV 241 (741)
T ss_dssp SSEEEEEET-TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEE
T ss_pred CCEEEEEeC-CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCC
Confidence 999998874 69999999987766554444332 47899999999999998765
Q ss_pred ----------------------eEEEEECCC-CceeEEec--cCCCCeeEEEEcCCCCEEEEEEC-----CCcEEEEeCC
Q 005277 486 ----------------------TARIWSMDR-IQPLRIMA--GHLSDVDCVRWHINCNYIATGSS-----DKTVRLWDVS 535 (704)
Q Consensus 486 ----------------------~i~lwd~~~-~~~~~~~~--~~~~~V~~v~~~p~~~~l~tgs~-----dg~I~iwd~~ 535 (704)
.|.+||+.+ ++...... .|...+..++| |+|++|++++. +..|++||+.
T Consensus 242 ~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~ 320 (741)
T 2ecf_A 242 YADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLA 320 (741)
T ss_dssp CSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETT
T ss_pred CCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECC
Confidence 889999988 77665543 36778999999 99999998764 5679999999
Q ss_pred CCcEEEEeecCCC----CEEEEEEecCCCEEEEEeCCCeEEEEeCC-CCeeeeeecCCCceeeee-eeeeeehccccccc
Q 005277 536 SGECVRIFIGHRS----MILSLAMSPDGRYMASGDEDGTIMMWDLA-SGRCVTPLMGHTSCVWTL-AYRFLLLVTNAYLK 609 (704)
Q Consensus 536 ~~~~~~~~~~h~~----~i~~l~~spdg~~l~sg~~dg~I~iwdl~-~~~~~~~~~~h~~~V~sl-~~~~~~~~~~~~~~ 609 (704)
++++...+..+.. .+.+++|+|||+++++++.||.++||.+. .+. ...+..|...+.++ .|
T Consensus 321 ~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~------------ 387 (741)
T 2ecf_A 321 SNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAV------------ 387 (741)
T ss_dssp TCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEE------------
T ss_pred CCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEE------------
Confidence 9998877766553 45689999999999999999988888765 344 77777787778776 47
Q ss_pred cccccccceeeeeeeEEeecccCCCCCEEE-EEeCCC--cEEEEeCCCCccccccccccCccccccccccCCCCcCeEEE
Q 005277 610 ISDKVSTGFLFYSLTIIYFGCASCEGSLLA-SGSADC--TVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSL 686 (704)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~la-sgs~Dg--~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l 686 (704)
+++|+.|+ +++.++ .++||++..... .+..+.. ...+..+
T Consensus 388 ----------------------s~dg~~l~~~~~~~~~~~~~l~~~~~~g~--------------~~~~l~~-~~~~~~~ 430 (741)
T 2ecf_A 388 ----------------------DEKAGLAYFRAGIESARESQIYAVPLQGG--------------QPQRLSK-APGMHSA 430 (741)
T ss_dssp ----------------------ETTTTEEEEEECSSCTTCBEEEEEETTCC--------------CCEECCC-SCSEEEE
T ss_pred ----------------------eCCCCEEEEEEeCCCCceEEEEEEEcCCC--------------Ceeeccc-CCCceEE
Confidence 99998775 555555 899999864221 1122222 4568899
Q ss_pred EEccCCcEEEEeecC
Q 005277 687 QFSRRNLLFAAGALS 701 (704)
Q Consensus 687 ~fs~~g~~La~gs~d 701 (704)
+|||||..|+....+
T Consensus 431 ~~spdg~~l~~~~~~ 445 (741)
T 2ecf_A 431 SFARNASVYVDSWSN 445 (741)
T ss_dssp EECTTSSEEEEEEEE
T ss_pred EECCCCCEEEEEecC
Confidence 999999988876543
No 138
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.91 E-value=1.9e-22 Score=227.01 Aligned_cols=267 Identities=11% Similarity=0.109 Sum_probs=210.2
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeecc-CCccCeEEEEEcCCCCEE
Q 005277 358 SISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ-GHSGPVYSASFSPLGDFI 436 (704)
Q Consensus 358 ~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~l 436 (704)
+|+|++.++++++.|++|.+||..+. .....+. +|. +.+++|+|++++|
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~----------------------------~~~~~i~~g~~--~~~v~~spdg~~l 193 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSK----------------------------KIVKVIDTGYA--VHISRMSASGRYL 193 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTC----------------------------CEEEEEECSTT--EEEEEECTTSCEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCc----------------------------eEEEEEecCcc--cceEEECCCCCEE
Confidence 37889999999999999999998752 2233333 343 8899999999999
Q ss_pred EEEeCCCeEEEEeC--CCCceeEEeecCCcCeeEEEEcC----CCCEEEEEe-CCCeEEEEECCCCceeEEeccC-----
Q 005277 437 LSSSADTTIRLWST--KLNANLVCYKGHNYPVWDVQFNP----QGHYFASSS-HDRTARIWSMDRIQPLRIMAGH----- 504 (704)
Q Consensus 437 ~s~s~Dg~I~lwd~--~~~~~~~~~~~h~~~V~~v~~sp----~~~~l~sgs-~dg~i~lwd~~~~~~~~~~~~~----- 504 (704)
++++.|++|++||+ .+++.+..+.. ...+..++|+| +|+++++++ .+++|.+||..+.+++..+..+
T Consensus 194 ~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~ 272 (543)
T 1nir_A 194 LVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVD 272 (543)
T ss_dssp EEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSS
T ss_pred EEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccC
Confidence 99999999999999 78888888874 45679999999 999999988 5899999999999998887642
Q ss_pred ------CCCeeEEEEcCCCCE-EEEEECCCcEEEEeCCCCcEEE--EeecCCCCEEEEEEecCCCEEEEE-eCCCeEEEE
Q 005277 505 ------LSDVDCVRWHINCNY-IATGSSDKTVRLWDVSSGECVR--IFIGHRSMILSLAMSPDGRYMASG-DEDGTIMMW 574 (704)
Q Consensus 505 ------~~~V~~v~~~p~~~~-l~tgs~dg~I~iwd~~~~~~~~--~~~~h~~~i~~l~~spdg~~l~sg-~~dg~I~iw 574 (704)
...+.++.++|++.. +++...++.|.+||+.+++.+. .+ .+...+.+++|+|+|++|+++ ..+++|.+|
T Consensus 273 ~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~ 351 (543)
T 1nir_A 273 TQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVI 351 (543)
T ss_dssp SCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEE
T ss_pred ccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEE
Confidence 236889999997655 4556678999999998866543 33 456678899999999987655 468999999
Q ss_pred eCCCCeeeeeecC----CCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCC-CCEEEEEe-CCCcEE
Q 005277 575 DLASGRCVTPLMG----HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCE-GSLLASGS-ADCTVK 648 (704)
Q Consensus 575 dl~~~~~~~~~~~----h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-g~~lasgs-~Dg~V~ 648 (704)
|+.+++++..+.. |.+....+ + +|+ +.+++++. .|++|.
T Consensus 352 D~~tg~l~~~i~~g~~ph~g~g~~~-~----------------------------------~p~~g~~~~s~~~~d~~V~ 396 (543)
T 1nir_A 352 DSKDRRLSALVDVGKTPHPGRGANF-V----------------------------------HPKYGPVWSTSHLGDGSIS 396 (543)
T ss_dssp ETTTTEEEEEEECSSSBCCTTCEEE-E----------------------------------ETTTEEEEEEEBSSSSEEE
T ss_pred ECCCCeEEEeeccCCCCCCCCCccc-C----------------------------------CCCCccEEEeccCCCceEE
Confidence 9999998887764 44322222 2 565 66777775 689999
Q ss_pred EEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEee
Q 005277 649 LWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 699 (704)
Q Consensus 649 iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs 699 (704)
|||+.+... ....++.+.++..+...+..+.|+|+++.|++++
T Consensus 397 v~d~~~~~~--------~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~ 439 (543)
T 1nir_A 397 LIGTDPKNH--------PQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDT 439 (543)
T ss_dssp EEECCTTTC--------TTTBTSEEEEEECSCSCCCCEECCTTCCEEEECC
T ss_pred EEEeCCCCC--------chhcCeEEEEEEcCCCCceEEEcCCCCCcEEEec
Confidence 999987321 0112356778888888899999999999999987
No 139
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.90 E-value=6.4e-23 Score=239.53 Aligned_cols=271 Identities=10% Similarity=0.091 Sum_probs=199.1
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCcc---CeEEEEE
Q 005277 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG---PVYSASF 429 (704)
Q Consensus 353 ~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~ 429 (704)
.+.+++|+|||+++++ +.||.|++||+.+.. ....+.+|.. .|.+++|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~----------------------------~~~~~~~~~~~~~~v~~~~~ 68 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNT----------------------------STVLIEGKKIESLRAIRYEI 68 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCC----------------------------CEEEECTTTTTTTTCSEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCc----------------------------EEEEeccccccccccceEEE
Confidence 3567899999998876 689999999987622 2233444543 4899999
Q ss_pred cCCCCEEEEEeCC---------CeEEEEeCCCCceeEEee---cCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 005277 430 SPLGDFILSSSAD---------TTIRLWSTKLNANLVCYK---GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP 497 (704)
Q Consensus 430 sp~~~~l~s~s~D---------g~I~lwd~~~~~~~~~~~---~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~ 497 (704)
||||++|++++.+ +.|.+||+.+++. ..+. +|...+..++|+|+|+.+++++. +.|++||+.+++.
T Consensus 69 SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~ 146 (723)
T 1xfd_A 69 SPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA 146 (723)
T ss_dssp CTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC
T ss_pred CCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCce
Confidence 9999999998764 7889999998876 3333 34455889999999999999886 8999999999887
Q ss_pred eEEeccCCCCe------------------eEEEEcCCCCEEEEEECCC--------------------------------
Q 005277 498 LRIMAGHLSDV------------------DCVRWHINCNYIATGSSDK-------------------------------- 527 (704)
Q Consensus 498 ~~~~~~~~~~V------------------~~v~~~p~~~~l~tgs~dg-------------------------------- 527 (704)
.+....+...+ .+++|+|+|++|++++.++
T Consensus 147 ~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 226 (723)
T 1xfd_A 147 IRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENP 226 (723)
T ss_dssp EEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCC
T ss_pred EEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCC
Confidence 77766544433 7899999999999987553
Q ss_pred --cEEEEeCCCCcEEEEeecC------CCCEEEEEEecCCCEEEEEeC----CCeEEEEeCCCCeeeeeecC-CCceee-
Q 005277 528 --TVRLWDVSSGECVRIFIGH------RSMILSLAMSPDGRYMASGDE----DGTIMMWDLASGRCVTPLMG-HTSCVW- 593 (704)
Q Consensus 528 --~I~iwd~~~~~~~~~~~~h------~~~i~~l~~spdg~~l~sg~~----dg~I~iwdl~~~~~~~~~~~-h~~~V~- 593 (704)
.|++||+.+++....+..+ ...+.+++|||||++|++... +..|++||+.+++....+.. +...+.
T Consensus 227 ~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~ 306 (723)
T 1xfd_A 227 SISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHR 306 (723)
T ss_dssp EEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCC
T ss_pred eeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEec
Confidence 7999999988865666554 567899999999999877653 35799999999887665543 333332
Q ss_pred ---eeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEE--EeCCC------cEEEEeC-CCCcccccc
Q 005277 594 ---TLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLAS--GSADC------TVKLWDV-TTSTKVLKT 661 (704)
Q Consensus 594 ---sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~las--gs~Dg------~V~iWd~-~~~~~~~~~ 661 (704)
.+.| +|+|+.|+. +..+| .|.+||+ ..+..
T Consensus 307 ~~~~~~~----------------------------------spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~---- 348 (723)
T 1xfd_A 307 QNEEPVF----------------------------------SKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSN---- 348 (723)
T ss_dssp CCCCCEE----------------------------------CTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSS----
T ss_pred cCCCceE----------------------------------cCCCCeEEEEEecccCCCcceeEEEEEeccCCCCc----
Confidence 6677 999997764 45667 4666773 33220
Q ss_pred ccccCccccccccccCCCCcCeEE-EEEccCCcEEEEeecC
Q 005277 662 EEKSGTNRLRSLKTLPTKSTPVYS-LQFSRRNLLFAAGALS 701 (704)
Q Consensus 662 ~~~~~~~~~~~l~~~~~~~~~V~~-l~fs~~g~~La~gs~d 701 (704)
.....+......+.. ++|+|+|+.|+..+.+
T Consensus 349 ---------~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~ 380 (723)
T 1xfd_A 349 ---------DNIQSITSGDWDVTKILAYDEKGNKIYFLSTE 380 (723)
T ss_dssp ---------CCCCBSCCSSSCEEEEEEEETTTTEEEEEESS
T ss_pred ---------cceeEeecCCeEEEeeeEEcCCCCEEEEEEcC
Confidence 001122223344554 6999999999876655
No 140
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.90 E-value=4.9e-22 Score=203.64 Aligned_cols=250 Identities=16% Similarity=0.134 Sum_probs=191.6
Q ss_pred cCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEccc-CCccccccccCCCCCCCCcccccCC
Q 005277 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAK-LGQQAVSSGLQGENDTTPREDIIGP 407 (704)
Q Consensus 329 ~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (704)
...+++|+....... .+..|...|.+++|+|||++|++++ ++.|.+||+.+ ...
T Consensus 21 ~~~i~~~d~~~~~~~--~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~---------------------- 75 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMR--VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP---------------------- 75 (297)
T ss_dssp CEEEEEEETTTTEEE--EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC----------------------
T ss_pred ceeEEEEeCCCCcee--eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc----------------------
Confidence 346777765544333 4566888999999999999999986 88999999875 221
Q ss_pred CCCccceeeccCC-ccCeEEEEEcCCCCEEEEEe--CCCeEEEEeC--CCCceeEEeecCCcCeeEEEEcCCCCEEE-EE
Q 005277 408 NGRKRSYTLYQGH-SGPVYSASFSPLGDFILSSS--ADTTIRLWST--KLNANLVCYKGHNYPVWDVQFNPQGHYFA-SS 481 (704)
Q Consensus 408 ~~~~~~~~~~~~h-~~~V~~l~~sp~~~~l~s~s--~Dg~I~lwd~--~~~~~~~~~~~h~~~V~~v~~sp~~~~l~-sg 481 (704)
.....+| ...|.+++|+|++++|++++ .++.+.||.+ .++. ...+..+ ..+..++|+|++++++ ++
T Consensus 76 ------~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~ 147 (297)
T 2ojh_A 76 ------EKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCG 147 (297)
T ss_dssp ------EECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEE
T ss_pred ------eEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEE
Confidence 1222233 46788999999999999988 3345555554 4443 4444433 3588999999999887 77
Q ss_pred eCCCeEEEEECCC-CceeEEeccCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCC-CCcEEEEeecCCCCEEEEEEecC
Q 005277 482 SHDRTARIWSMDR-IQPLRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVS-SGECVRIFIGHRSMILSLAMSPD 558 (704)
Q Consensus 482 s~dg~i~lwd~~~-~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~-~~~~~~~~~~h~~~i~~l~~spd 558 (704)
+.++.+++|+++. ......+..+...+.+++|+|++++|++++ .++.+++|++. .+..+..+..|...+.+++|+|+
T Consensus 148 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~d 227 (297)
T 2ojh_A 148 IRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPS 227 (297)
T ss_dssp EETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTT
T ss_pred CCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCC
Confidence 8899999999642 234456667888999999999999888776 58999999986 56667778888888999999999
Q ss_pred CCEEEEEeCC-----------CeEEEEeCCCCee--eeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeE
Q 005277 559 GRYMASGDED-----------GTIMMWDLASGRC--VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTI 625 (704)
Q Consensus 559 g~~l~sg~~d-----------g~I~iwdl~~~~~--~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (704)
|++|++++.+ +.|.+||+.+++. +..+.+|...+.++.|
T Consensus 228 g~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 279 (297)
T 2ojh_A 228 GDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNW---------------------------- 279 (297)
T ss_dssp SSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCB----------------------------
T ss_pred CCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceE----------------------------
Confidence 9999988765 5699999988765 4444578888999999
Q ss_pred EeecccCCCCCEEEEEeCCC
Q 005277 626 IYFGCASCEGSLLASGSADC 645 (704)
Q Consensus 626 ~~~~~~s~~g~~lasgs~Dg 645 (704)
+|+++.|++++.+.
T Consensus 280 ------spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 280 ------SPDGDEFAYVRYFP 293 (297)
T ss_dssp ------CTTSSEEEEEEECC
T ss_pred ------CCCCCEEEEEEecc
Confidence 99999998887654
No 141
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.90 E-value=9.9e-22 Score=206.34 Aligned_cols=274 Identities=12% Similarity=0.081 Sum_probs=193.3
Q ss_pred EEcCCCC-EEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEE
Q 005277 358 SISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFI 436 (704)
Q Consensus 358 ~fs~dg~-~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l 436 (704)
.|.+++. .++++..++.|.+||+.+.. .......+...+ +++|+|+++++
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~----------------------------~~~~~~~~~~~~-~~~~s~dg~~l 54 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLE----------------------------ILNQITLGYDFV-DTAITSDCSNV 54 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCC----------------------------EEEEEECCCCEE-EEEECSSSCEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccc----------------------------eeeeEEccCCcc-eEEEcCCCCEE
Confidence 4555544 57778889999999987521 222223344556 99999999977
Q ss_pred EEEeC-CCeEEEEeCCCCce-eEEeecCCcCeeEEEEcCCCCEEEEEeCCC---eEEEEECCCCceeEEeccCCCCeeEE
Q 005277 437 LSSSA-DTTIRLWSTKLNAN-LVCYKGHNYPVWDVQFNPQGHYFASSSHDR---TARIWSMDRIQPLRIMAGHLSDVDCV 511 (704)
Q Consensus 437 ~s~s~-Dg~I~lwd~~~~~~-~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg---~i~lwd~~~~~~~~~~~~~~~~V~~v 511 (704)
++++. ++.|.+||+.+++. ...+..+..+..+++|+|+|++++++..++ .|.+||+.+++.+..+..+ ....++
T Consensus 55 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~ 133 (331)
T 3u4y_A 55 VVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGI 133 (331)
T ss_dssp EEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEE
T ss_pred EEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccce
Confidence 76655 89999999999887 777777777776699999999999655553 8999999999888877643 457899
Q ss_pred EEcCCCCEEEEE-ECCCc-EEEEeCCCCcEE----EEeecCCCCEEEEEEecCCCEEEEE-eCCCeEEEEeCCCCee---
Q 005277 512 RWHINCNYIATG-SSDKT-VRLWDVSSGECV----RIFIGHRSMILSLAMSPDGRYMASG-DEDGTIMMWDLASGRC--- 581 (704)
Q Consensus 512 ~~~p~~~~l~tg-s~dg~-I~iwd~~~~~~~----~~~~~h~~~i~~l~~spdg~~l~sg-~~dg~I~iwdl~~~~~--- 581 (704)
+|+|+|++++++ ..++. |.+|++.....+ .........+.+++|+|+|++++++ ..++.|.+||+.+++.
T Consensus 134 ~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~ 213 (331)
T 3u4y_A 134 AISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITL 213 (331)
T ss_dssp EECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEE
T ss_pred EECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccce
Confidence 999999866554 55688 999998754332 1222345568999999999966554 4689999999999887
Q ss_pred eeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEe-CCCcEEEEeCCCCccccc
Q 005277 582 VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGS-ADCTVKLWDVTTSTKVLK 660 (704)
Q Consensus 582 ~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs-~Dg~V~iWd~~~~~~~~~ 660 (704)
+..+..+ ..+..+.| +|+|+++++++ .++.|.+||+.+++....
T Consensus 214 ~~~~~~~-~~~~~~~~----------------------------------spdg~~l~v~~~~~~~i~~~d~~~~~~~~~ 258 (331)
T 3u4y_A 214 LNAVGTN-NLPGTIVV----------------------------------SRDGSTVYVLTESTVDVFNFNQLSGTLSFV 258 (331)
T ss_dssp EEEEECS-SCCCCEEE----------------------------------CTTSSEEEEECSSEEEEEEEETTTTEEEEE
T ss_pred eeeccCC-CCCceEEE----------------------------------CCCCCEEEEEEcCCCEEEEEECCCCceeee
Confidence 6666643 55667777 99999775554 578999999988754110
Q ss_pred cccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277 661 TEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 702 (704)
Q Consensus 661 ~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg 702 (704)
.... ..+...+.....+..++|+|+|.+|++++.++
T Consensus 259 ~~~~------~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~ 294 (331)
T 3u4y_A 259 KSFG------HGLLIDPRPLFGANQMALNKTETKLFISANIS 294 (331)
T ss_dssp EEEE------CCCCCCCGGGTTCCCEEECTTSSEEEEEETTT
T ss_pred cccc------cccccCCCCcccccceEECCCCCEEEEecCCC
Confidence 0000 00000011111235689999999887766554
No 142
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.90 E-value=6.9e-22 Score=207.82 Aligned_cols=263 Identities=13% Similarity=0.188 Sum_probs=184.9
Q ss_pred CEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCC-
Q 005277 364 SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSAD- 442 (704)
Q Consensus 364 ~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D- 442 (704)
.++++++.|+.|++|++...+. ..... ...|...+.+++|+|++++|++++.+
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~-------------------------~~~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~ 59 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGA-------------------------LTLTQ-VVDVPGQVQPMVVSPDKRYLYVGVRPE 59 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSC-------------------------EEEEE-EEECSSCCCCEEECTTSSEEEEEETTT
T ss_pred EEEEeCCCCCeEEEEEECCCCc-------------------------EEEee-eEecCCCCceEEECCCCCEEEEeecCC
Confidence 3455557899999999863110 11111 23466788999999999999988876
Q ss_pred CeEEEEeCC--CCc--eeEEeecCCcCeeEEEEcCCCCEEEEEeC-CCeEEEEECC---CCceeEEeccCCCCeeEEEEc
Q 005277 443 TTIRLWSTK--LNA--NLVCYKGHNYPVWDVQFNPQGHYFASSSH-DRTARIWSMD---RIQPLRIMAGHLSDVDCVRWH 514 (704)
Q Consensus 443 g~I~lwd~~--~~~--~~~~~~~h~~~V~~v~~sp~~~~l~sgs~-dg~i~lwd~~---~~~~~~~~~~~~~~V~~v~~~ 514 (704)
+.|.+|++. ++. .+..+..+. .+..++|+|+++++++++. ++.|.+||++ ....+..+.. ...+.+++|+
T Consensus 60 ~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s 137 (343)
T 1ri6_A 60 FRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANIS 137 (343)
T ss_dssp TEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEEC
T ss_pred CeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEEC
Confidence 999999998 444 334455444 7889999999998877764 8899999994 3344445443 3568999999
Q ss_pred CCCCEEEEEE-CCCcEEEEeCCC-CcEEE----Eeec-CCCCEEEEEEecCCCEEEEEe-CCCeEEEEeCCC--Cee--e
Q 005277 515 INCNYIATGS-SDKTVRLWDVSS-GECVR----IFIG-HRSMILSLAMSPDGRYMASGD-EDGTIMMWDLAS--GRC--V 582 (704)
Q Consensus 515 p~~~~l~tgs-~dg~I~iwd~~~-~~~~~----~~~~-h~~~i~~l~~spdg~~l~sg~-~dg~I~iwdl~~--~~~--~ 582 (704)
|+++++++++ .++.|++||+.+ ++... .... ....+.+++|+|+|++|++++ .++.|.+||+.. ++. .
T Consensus 138 ~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~ 217 (343)
T 1ri6_A 138 PDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECV 217 (343)
T ss_dssp TTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEE
T ss_pred CCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEE
Confidence 9999988887 899999999987 65432 2222 345788999999999776554 889999999953 432 2
Q ss_pred eeec----CC--CceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEE-EEeCCCcEEEEeCCCC
Q 005277 583 TPLM----GH--TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLA-SGSADCTVKLWDVTTS 655 (704)
Q Consensus 583 ~~~~----~h--~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~la-sgs~Dg~V~iWd~~~~ 655 (704)
..+. ++ ...+..+.| +|+|++|+ ++..++.|.+|++...
T Consensus 218 ~~~~~~~~~~~~~~~~~~i~~----------------------------------s~dg~~l~v~~~~~~~i~v~d~~~~ 263 (343)
T 1ri6_A 218 QTLDMMPENFSDTRWAADIHI----------------------------------TPDGRHLYACDRTASLITVFSVSED 263 (343)
T ss_dssp EEEECSCTTCCSCCCEEEEEE----------------------------------CTTSSEEEEEETTTTEEEEEEECTT
T ss_pred eeccccCccccccCCccceEE----------------------------------CCCCCEEEEEecCCCEEEEEEEcCC
Confidence 2221 11 123445666 99998776 5557999999999742
Q ss_pred ccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeec
Q 005277 656 TKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL 700 (704)
Q Consensus 656 ~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~ 700 (704)
... ...+..++.+.. +.+++|+|+|.+|++++.
T Consensus 264 ~~~-----------~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~ 296 (343)
T 1ri6_A 264 GSV-----------LSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQ 296 (343)
T ss_dssp SCC-----------EEEEEEEECSSS-CCCEEECTTSSEEEEECT
T ss_pred CCc-----------eEEeeeecCCCc-cceEEECCCCCEEEEecC
Confidence 110 122333433433 889999999998887774
No 143
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.90 E-value=5e-22 Score=231.97 Aligned_cols=299 Identities=14% Similarity=0.104 Sum_probs=210.3
Q ss_pred CeEeecCCCCCCeEEEEEeeCCC---CEEEEEEcCCCCEEEEEeCC---------CcEEEEEcccCCccccccccCCCCC
Q 005277 330 NRVHLSSAALPSVSFYTFINTHN---GLNCASISQDGSLVAGGFSD---------SSLKVWDMAKLGQQAVSSGLQGEND 397 (704)
Q Consensus 330 ~~~~l~~~~~p~~~~~~~~~~~~---~V~~~~fs~dg~~lasg~~d---------g~I~iwdl~~~~~~~~~~~~~~~~~ 397 (704)
..+++|+........ .+..|.. .|.+++|||||++||+++.+ +.|.+||+.+...
T Consensus 37 g~i~~~d~~~g~~~~-~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~------------ 103 (723)
T 1xfd_A 37 GTVRLWNVETNTSTV-LIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP------------ 103 (723)
T ss_dssp SCEEEBCGGGCCCEE-EECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC------------
T ss_pred CCEEEEECCCCcEEE-EeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce------------
Confidence 367777765443322 2333333 49999999999999999875 7788999876321
Q ss_pred CCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCe-----------
Q 005277 398 TTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPV----------- 466 (704)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V----------- 466 (704)
.......+|...+.+++|||||+.|+.++. +.|++|++.+++.......+...+
T Consensus 104 --------------~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ 168 (723)
T 1xfd_A 104 --------------QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYE 168 (723)
T ss_dssp --------------EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHH
T ss_pred --------------EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEE
Confidence 111222346666889999999999998886 799999999887776665544333
Q ss_pred -------eEEEEcCCCCEEEEEeCCC----------------------------------eEEEEECCCCceeEEeccC-
Q 005277 467 -------WDVQFNPQGHYFASSSHDR----------------------------------TARIWSMDRIQPLRIMAGH- 504 (704)
Q Consensus 467 -------~~v~~sp~~~~l~sgs~dg----------------------------------~i~lwd~~~~~~~~~~~~~- 504 (704)
.+++|+|+|++|++++.|+ .|++||+.+++....+..+
T Consensus 169 ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~ 248 (723)
T 1xfd_A 169 EEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPD 248 (723)
T ss_dssp HTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCC
T ss_pred EEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCc
Confidence 7899999999999987553 8999999988765666544
Q ss_pred -----CCCeeEEEEcCCCCEEEEEEC----CCcEEEEeCCCCcEEEEeec-CCCCE----EEEEEecCCCEEEE--EeCC
Q 005277 505 -----LSDVDCVRWHINCNYIATGSS----DKTVRLWDVSSGECVRIFIG-HRSMI----LSLAMSPDGRYMAS--GDED 568 (704)
Q Consensus 505 -----~~~V~~v~~~p~~~~l~tgs~----dg~I~iwd~~~~~~~~~~~~-h~~~i----~~l~~spdg~~l~s--g~~d 568 (704)
...+.+++|+|||+++++.+. +..|++||+.++++...+.. +...+ ..++|+|||+.|+. +..+
T Consensus 249 ~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 328 (723)
T 1xfd_A 249 DPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQ 328 (723)
T ss_dssp CGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECC
T ss_pred cCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEeccc
Confidence 567899999999999877653 35799999999988776644 33433 37899999997775 4566
Q ss_pred C------eEEEEe-CCCCe--eeeeecCCCceeee-eeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEE
Q 005277 569 G------TIMMWD-LASGR--CVTPLMGHTSCVWT-LAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLL 638 (704)
Q Consensus 569 g------~I~iwd-l~~~~--~~~~~~~h~~~V~s-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l 638 (704)
| .|.+|| ..++. +...+..+...+.. +.| +|+|+.|
T Consensus 329 ~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~----------------------------------spdg~~l 374 (723)
T 1xfd_A 329 GGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAY----------------------------------DEKGNKI 374 (723)
T ss_dssp SSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEE----------------------------------ETTTTEE
T ss_pred CCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEE----------------------------------cCCCCEE
Confidence 6 577778 34444 14455443333433 577 9999999
Q ss_pred EEEeCC---CcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeec
Q 005277 639 ASGSAD---CTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL 700 (704)
Q Consensus 639 asgs~D---g~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~ 700 (704)
+..+.+ +.++||++...... ....+..-..+...+..++|+|+|+.|+....
T Consensus 375 ~~~~~~~~~~~~~l~~~~~~~~~----------~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~ 429 (723)
T 1xfd_A 375 YFLSTEDLPRRRQLYSANTVGNF----------NRQCLSCDLVENCTYFSASFSHSMDFFLLKCE 429 (723)
T ss_dssp EEEESSSCTTCCEEEEECSSTTC----------CCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred EEEEcCCCCcceEEEEEeCCCCC----------CcceecccccCCCCeEEEEECCCCCEEEEEcc
Confidence 766655 88999998754310 00111111114566889999999998887543
No 144
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.90 E-value=3.1e-22 Score=227.94 Aligned_cols=258 Identities=12% Similarity=0.031 Sum_probs=197.0
Q ss_pred CEEEEEEcCCCCEEEEEeC-CCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCc-cCeEEEEEc
Q 005277 353 GLNCASISQDGSLVAGGFS-DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS-GPVYSASFS 430 (704)
Q Consensus 353 ~V~~~~fs~dg~~lasg~~-dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~s 430 (704)
.|.+++|+|||+.||+++. ||.++||++.+. ....+..|. ..|.+++|+
T Consensus 23 ~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g-----------------------------~~~~lt~~~~~~~~~~~~s 73 (582)
T 3o4h_A 23 EKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG-----------------------------ETVKLNREPINSVLDPHYG 73 (582)
T ss_dssp CEEEEEEEETTTEEEEEEEETTEEEEEEEETT-----------------------------EEEECCSSCCSEECEECTT
T ss_pred chheeecCCCCCeEEEEEccCCceeEEEEcCC-----------------------------CcEeeecccccccccccCC
Confidence 5899999999999999887 999999997541 112233444 689999999
Q ss_pred CCCCEEEEEeC---CCeEEEEeCCC--CceeEEeecCCcCeeEEEEcCCCC--EEEEEeCCCeEEEEECCCCceeEEecc
Q 005277 431 PLGDFILSSSA---DTTIRLWSTKL--NANLVCYKGHNYPVWDVQFNPQGH--YFASSSHDRTARIWSMDRIQPLRIMAG 503 (704)
Q Consensus 431 p~~~~l~s~s~---Dg~I~lwd~~~--~~~~~~~~~h~~~V~~v~~sp~~~--~l~sgs~dg~i~lwd~~~~~~~~~~~~ 503 (704)
|| +.+++++. +...++|.+.. ......+..+. .+...+|+|+|+ .+++++. +.+.+||+++++..+....
T Consensus 74 pd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~~~-~~~~~~~s~dg~~~~~~s~~~-~~~~l~d~~~g~~~~l~~~ 150 (582)
T 3o4h_A 74 VG-RVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVK-PMRILSGVDTGEAVVFTGATE-DRVALYALDGGGLRELARL 150 (582)
T ss_dssp CS-EEEEEEECSTTSCCEEEEEEETTSTTCCEECTTSC-SBEEEEEEECSSCEEEEEECS-SCEEEEEEETTEEEEEEEE
T ss_pred CC-eEEEEeccCCCCcceEEEEEeccCCCccccccCCC-CceeeeeCCCCCeEEEEecCC-CCceEEEccCCcEEEeecC
Confidence 99 77777765 45566765543 22222333222 344668888775 3444444 4555999998876665543
Q ss_pred CCCCeeEEEEcCCCCEEEEEECC----CcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCC--eEEEEeCC
Q 005277 504 HLSDVDCVRWHINCNYIATGSSD----KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG--TIMMWDLA 577 (704)
Q Consensus 504 ~~~~V~~v~~~p~~~~l~tgs~d----g~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg--~I~iwdl~ 577 (704)
+. .+++|+|||++|++++.+ +.|++||+.+++.. .+..|.+.+.+++|||||++|+++..+| .|++||+.
T Consensus 151 ~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~ 226 (582)
T 3o4h_A 151 PG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPR 226 (582)
T ss_dssp SS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTT
T ss_pred CC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCC
Confidence 33 889999999999988877 78999999988865 5678888999999999999999888888 89999999
Q ss_pred CCeeeeeecCCCceeeeee--------eeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEE
Q 005277 578 SGRCVTPLMGHTSCVWTLA--------YRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKL 649 (704)
Q Consensus 578 ~~~~~~~~~~h~~~V~sl~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~i 649 (704)
+++.. .+.+|...+..+. | +|+|.++++++.||++++
T Consensus 227 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~----------------------------------spdg~~~~~~~~~g~~~l 271 (582)
T 3o4h_A 227 DGSVE-DLELPSKDFSSYRPTAITWLGY----------------------------------LPDGRLAVVARREGRSAV 271 (582)
T ss_dssp TCCEE-ECCCSCSHHHHHCCSEEEEEEE----------------------------------CTTSCEEEEEEETTEEEE
T ss_pred CCcEE-EccCCCcChhhhhhccccceeE----------------------------------cCCCcEEEEEEcCCcEEE
Confidence 98887 7778887777776 6 999999999999999999
Q ss_pred EeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277 650 WDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 702 (704)
Q Consensus 650 Wd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg 702 (704)
|++ ++.. . ...+.|.+++|+ +|.++++++.+.
T Consensus 272 ~~~--g~~~---------------~---~~~~~v~~~~~s-dg~~l~~~s~~~ 303 (582)
T 3o4h_A 272 FID--GERV---------------E---APQGNHGRVVLW-RGKLVTSHTSLS 303 (582)
T ss_dssp EET--TEEE---------------C---CCSSEEEEEEEE-TTEEEEEEEETT
T ss_pred EEE--CCee---------------c---cCCCceEEEEec-CCEEEEEEcCCC
Confidence 999 3321 1 123568899999 999998887764
No 145
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.90 E-value=7e-22 Score=230.25 Aligned_cols=267 Identities=16% Similarity=0.155 Sum_probs=201.7
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcC
Q 005277 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (704)
Q Consensus 352 ~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 431 (704)
..|.+++|||| ..++.+. ++.|++||+.+. ....+..+.+.+.+++|+|
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~-----------------------------~~~~l~~~~~~~~~~~~Sp 130 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLAR-----------------------------KVTYLFDTNEETASLDFSP 130 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTT-----------------------------EEEEEECCTTCCTTCEECT
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCC-----------------------------ceEEccCCcccccCCcCCC
Confidence 56999999999 6666664 599999998752 1223344667788999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCC-----CceeEEeecCCcC--------------eeEEEEcCCCCEEEEEe----------
Q 005277 432 LGDFILSSSADTTIRLWSTKL-----NANLVCYKGHNYP--------------VWDVQFNPQGHYFASSS---------- 482 (704)
Q Consensus 432 ~~~~l~s~s~Dg~I~lwd~~~-----~~~~~~~~~h~~~--------------V~~v~~sp~~~~l~sgs---------- 482 (704)
||++|+++ .|+.|++|++.+ ++.......+... +.++.|+|+|++|++++
T Consensus 131 dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~ 209 (706)
T 2z3z_A 131 VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTP 209 (706)
T ss_dssp TSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEE
T ss_pred CCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEE
Confidence 99999985 679999999998 7665544444332 48999999999999987
Q ss_pred -----------------------CCCeEEEEECCCCceeEEec--cCCCCeeEEEEcCCCCEEEEEECCC-----cEEEE
Q 005277 483 -----------------------HDRTARIWSMDRIQPLRIMA--GHLSDVDCVRWHINCNYIATGSSDK-----TVRLW 532 (704)
Q Consensus 483 -----------------------~dg~i~lwd~~~~~~~~~~~--~~~~~V~~v~~~p~~~~l~tgs~dg-----~I~iw 532 (704)
.+..|++||+.+++...... .|...+.+++|+|+|++|++++.++ .|++|
T Consensus 210 ~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~ 289 (706)
T 2z3z_A 210 IVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAY 289 (706)
T ss_dssp EEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEE
T ss_pred eeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEE
Confidence 45789999999887655443 4667799999999999999988775 89999
Q ss_pred eCCCCcEEEEee-c-CCC---CEEEEEEec--CCCEEEEEeCCCeEEEEeCC-CCeeeeeecCCCceeee-eeeeeeehc
Q 005277 533 DVSSGECVRIFI-G-HRS---MILSLAMSP--DGRYMASGDEDGTIMMWDLA-SGRCVTPLMGHTSCVWT-LAYRFLLLV 603 (704)
Q Consensus 533 d~~~~~~~~~~~-~-h~~---~i~~l~~sp--dg~~l~sg~~dg~I~iwdl~-~~~~~~~~~~h~~~V~s-l~~~~~~~~ 603 (704)
|+.+++....+. . +.. .+.+++|+| ||+++++++.||.++||++. ++..+..+..|...+.+ +.|
T Consensus 290 d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~------ 363 (706)
T 2z3z_A 290 DAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGF------ 363 (706)
T ss_dssp ETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEE------
T ss_pred ECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEE------
Confidence 999994333332 2 222 246789999 99999999999999999886 66777788878777776 678
Q ss_pred cccccccccccccceeeeeeeEEeecccCCCCCEEEEEeC-CC----cEEEEeCCCCccccccccccCccccccccccCC
Q 005277 604 TNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSA-DC----TVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT 678 (704)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~-Dg----~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~ 678 (704)
+|+|+.|+.++. ++ .|..||+.++.. ..+ .
T Consensus 364 ----------------------------spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~----------------~~l-~ 398 (706)
T 2z3z_A 364 ----------------------------DPKGTRLYFESTEASPLERHFYCIDIKGGKT----------------KDL-T 398 (706)
T ss_dssp ----------------------------CTTSSEEEEEESSSCTTCBEEEEEETTCCCC----------------EES-C
T ss_pred ----------------------------cCCCCEEEEEecCCCCceEEEEEEEcCCCCc----------------eec-c
Confidence 999987765554 44 566666665431 112 2
Q ss_pred CCcCeEEEEEccCCcEEEEeecC
Q 005277 679 KSTPVYSLQFSRRNLLFAAGALS 701 (704)
Q Consensus 679 ~~~~V~~l~fs~~g~~La~gs~d 701 (704)
+...+.+++|+|+|.+++.++.+
T Consensus 399 ~~~~~~~~~~spdg~~l~~~~~~ 421 (706)
T 2z3z_A 399 PESGMHRTQLSPDGSAIIDIFQS 421 (706)
T ss_dssp CSSSEEEEEECTTSSEEEEEEEC
T ss_pred CCCceEEEEECCCCCEEEEEecC
Confidence 45568999999999988877554
No 146
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.89 E-value=1.3e-21 Score=238.15 Aligned_cols=273 Identities=12% Similarity=0.131 Sum_probs=221.4
Q ss_pred EEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCe
Q 005277 345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (704)
Q Consensus 345 ~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 424 (704)
..+.+|...+.++.|+++ .+++++..+|.++||.++... .....+..|. .+
T Consensus 197 ~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g---------------------------~~~~~l~~~~-~~ 247 (1045)
T 1k32_A 197 KKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDG---------------------------KDLRKHTSFT-DY 247 (1045)
T ss_dssp EEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTS---------------------------CSCEECCCCC-SS
T ss_pred EECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCC---------------------------CcceEecCCC-Cc
Confidence 344788999999999998 777788889999999876411 1122333443 46
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeec-----------CCcCeeEEEEc-CCCCEEEEEeCCCeEEEEEC
Q 005277 425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG-----------HNYPVWDVQFN-PQGHYFASSSHDRTARIWSM 492 (704)
Q Consensus 425 ~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~-----------h~~~V~~v~~s-p~~~~l~sgs~dg~i~lwd~ 492 (704)
...+|+|+|++|++++ ++.|.+|++.. ..+..+.+ |...+.+++|+ |+|+++++++ ++.+.+|++
T Consensus 248 ~~~~~SpDG~~la~~~-~~~i~~~d~~~-~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~ 324 (1045)
T 1k32_A 248 YPRHLNTDGRRILFSK-GGSIYIFNPDT-EKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDV 324 (1045)
T ss_dssp CEEEEEESSSCEEEEE-TTEEEEECTTT-CCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECT
T ss_pred ceeeEcCCCCEEEEEe-CCEEEEecCCc-eEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcC
Confidence 6789999999988874 89999999954 34445544 34478999999 9999999888 789999999
Q ss_pred CCCceeEEeccCCC-CeeEEEEcCCCCEEEEEECCCcEE-EEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCe
Q 005277 493 DRIQPLRIMAGHLS-DVDCVRWHINCNYIATGSSDKTVR-LWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT 570 (704)
Q Consensus 493 ~~~~~~~~~~~~~~-~V~~v~~~p~~~~l~tgs~dg~I~-iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~ 570 (704)
..+.... +..|.. .+.+++|+ +|+.|++++.++.+. +||+.+++.... .+|...+.+++|+|||++|++++.++.
T Consensus 325 ~~~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l-~~~~~~~~~~~~SpDG~~la~~~~~~~ 401 (1045)
T 1k32_A 325 SGTYVLK-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKF-EENLGNVFAMGVDRNGKFAVVANDRFE 401 (1045)
T ss_dssp TSSBEEE-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEEC-CCCCCSEEEEEECTTSSEEEEEETTSE
T ss_pred CCCceEE-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEe-cCCccceeeeEECCCCCEEEEECCCCe
Confidence 8876544 566777 89999999 999999999888898 999988776544 488889999999999999999999999
Q ss_pred EEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCC-----
Q 005277 571 IMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADC----- 645 (704)
Q Consensus 571 I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg----- 645 (704)
|++||+.+++....+.+|...+.++.| +|+|++|++++.++
T Consensus 402 v~~~d~~tg~~~~~~~~~~~~v~~~~~----------------------------------SpDG~~la~~~~~~~~~~~ 447 (1045)
T 1k32_A 402 IMTVDLETGKPTVIERSREAMITDFTI----------------------------------SDNSRFIAYGFPLKHGETD 447 (1045)
T ss_dssp EEEEETTTCCEEEEEECSSSCCCCEEE----------------------------------CTTSCEEEEEEEECSSTTC
T ss_pred EEEEECCCCceEEeccCCCCCccceEE----------------------------------CCCCCeEEEEecCcccccc
Confidence 999999999888877789999999999 99999998887654
Q ss_pred -----cEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277 646 -----TVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 702 (704)
Q Consensus 646 -----~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg 702 (704)
.|++||+.++. +..+..+...+..++|+|+|+.|++++.++
T Consensus 448 ~~~~~~i~l~d~~~g~----------------~~~l~~~~~~~~~~~~spdG~~l~~~s~~~ 493 (1045)
T 1k32_A 448 GYVMQAIHVYDMEGRK----------------IFAATTENSHDYAPAFDADSKNLYYLSYRS 493 (1045)
T ss_dssp SCCEEEEEEEETTTTE----------------EEECSCSSSBEEEEEECTTSCEEEEEESCC
T ss_pred CCCCCeEEEEECCCCc----------------EEEeeCCCcccCCceEcCCCCEEEEEeccc
Confidence 89999998754 223445666788899999999999888754
No 147
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=2e-20 Score=196.36 Aligned_cols=263 Identities=11% Similarity=0.066 Sum_probs=187.5
Q ss_pred cCeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEEcccCCccccccccCCCCCCCCcccccCC
Q 005277 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFS-DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP 407 (704)
Q Consensus 329 ~~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~-dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (704)
...+.+++........ .+..+...+ +++|+|||+++++++. ++.|.+||+.+...
T Consensus 19 ~~~v~~~d~~~~~~~~-~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~---------------------- 74 (331)
T 3u4y_A 19 LRRISFFSTDTLEILN-QITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP---------------------- 74 (331)
T ss_dssp GTEEEEEETTTCCEEE-EEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC----------------------
T ss_pred CCeEEEEeCcccceee-eEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce----------------------
Confidence 3466777655443322 223344556 9999999996666655 89999999875211
Q ss_pred CCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCC---eEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEE-eC
Q 005277 408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADT---TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS-SH 483 (704)
Q Consensus 408 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg---~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sg-s~ 483 (704)
....+..+..++.+++|+|++++|+++..++ .|.+||+.+++.+..+..+. ...+++|+|+|++++++ ..
T Consensus 75 -----~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~ 148 (331)
T 3u4y_A 75 -----KVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-DAVGIAISPNGNGLILIDRS 148 (331)
T ss_dssp -----EEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT-TEEEEEECTTSSCEEEEEET
T ss_pred -----eEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC-CccceEECCCCCEEEEEecC
Confidence 1233444556666699999999999655553 89999999998888776544 56899999999855544 56
Q ss_pred CCe-EEEEECCCCcee----EEeccCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCcE---EEEeecCCCCEEEEE
Q 005277 484 DRT-ARIWSMDRIQPL----RIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGEC---VRIFIGHRSMILSLA 554 (704)
Q Consensus 484 dg~-i~lwd~~~~~~~----~~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~---~~~~~~h~~~i~~l~ 554 (704)
++. +.+|+++....+ ...........+++|+|+|+++++++ .++.|++||+.+++. +..+..+ ..+.+++
T Consensus 149 ~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~ 227 (331)
T 3u4y_A 149 SANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIV 227 (331)
T ss_dssp TTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEE
T ss_pred CCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEE
Confidence 688 999999764433 11223445689999999999776655 688999999999988 7777643 6678999
Q ss_pred EecCCCEEEEEe-CCCeEEEEeCCCCee--eeeecCC----Ccee---eeeeeeeeehccccccccccccccceeeeeee
Q 005277 555 MSPDGRYMASGD-EDGTIMMWDLASGRC--VTPLMGH----TSCV---WTLAYRFLLLVTNAYLKISDKVSTGFLFYSLT 624 (704)
Q Consensus 555 ~spdg~~l~sg~-~dg~I~iwdl~~~~~--~~~~~~h----~~~V---~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (704)
|+|+|++|++++ .++.|.+||+.+++. +..+..+ .... ..+.|
T Consensus 228 ~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 280 (331)
T 3u4y_A 228 VSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMAL--------------------------- 280 (331)
T ss_dssp ECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEE---------------------------
T ss_pred ECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEE---------------------------
Confidence 999999776655 578899999999876 3333222 2222 23455
Q ss_pred EEeecccCCCCCEEEEEe-CCCcEEEEeCCCCc
Q 005277 625 IIYFGCASCEGSLLASGS-ADCTVKLWDVTTST 656 (704)
Q Consensus 625 ~~~~~~~s~~g~~lasgs-~Dg~V~iWd~~~~~ 656 (704)
+|+|++|++++ .++.|.+||+....
T Consensus 281 -------spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 281 -------NKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp -------CTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred -------CCCCCEEEEecCCCCcEEEEEecCCc
Confidence 99999886555 56799999998754
No 148
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.88 E-value=3.3e-21 Score=210.99 Aligned_cols=213 Identities=16% Similarity=0.137 Sum_probs=163.1
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcC
Q 005277 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (704)
Q Consensus 352 ~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 431 (704)
..++++++++++.++++|+.+| |+||+......... ... . ..... .........|.+.|.+++|+|
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~----~~~-~---~~~~~-----~~~~~~~~~~~~~v~~l~~sp 102 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNK----PGD-D---PNKIV-----DKVQGLLVPMKFPIHHLALSC 102 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCC----TTC-C---TTCEE-----ECCCCEEECCSSCEEEEEECT
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcc----ccc-C---ccccc-----ccCccccccCCCcccEEEEcC
Confidence 3578899999999999999988 99998754210000 000 0 00000 000011234678899999999
Q ss_pred CCCEEE----EEeCCCeEEEEeCCCC--------ce---eEEeecCCcCeeEEEEcCC-CCEEEEEeCCCeEEEEECCCC
Q 005277 432 LGDFIL----SSSADTTIRLWSTKLN--------AN---LVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRI 495 (704)
Q Consensus 432 ~~~~l~----s~s~Dg~I~lwd~~~~--------~~---~~~~~~h~~~V~~v~~sp~-~~~l~sgs~dg~i~lwd~~~~ 495 (704)
++++|+ +|+.|++|++||+.++ +. +..+.+|...|++++|+|+ +.+|++++.||+|++||++++
T Consensus 103 dg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~ 182 (434)
T 2oit_A 103 DNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET 182 (434)
T ss_dssp TSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS
T ss_pred CCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC
Confidence 999999 7889999999998754 22 3556679999999999997 899999999999999999998
Q ss_pred ceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCC-------CCEEEEEEecCCCEEEEE-eC
Q 005277 496 QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-------SMILSLAMSPDGRYMASG-DE 567 (704)
Q Consensus 496 ~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-------~~i~~l~~spdg~~l~sg-~~ 567 (704)
..+....+|...|.+++|+|+|++|++|+.||+|++||++ ++....+..|. ..|.+++|++++.++++. ..
T Consensus 183 ~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~ 261 (434)
T 2oit_A 183 VKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAA 261 (434)
T ss_dssp EEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEET
T ss_pred cceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccC
Confidence 7776777888999999999999999999999999999998 66666554442 389999999999887653 34
Q ss_pred CC------eEEEEeCCCC
Q 005277 568 DG------TIMMWDLASG 579 (704)
Q Consensus 568 dg------~I~iwdl~~~ 579 (704)
|| .+++||++..
T Consensus 262 dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 262 DGTLETSPDVVMALLPKK 279 (434)
T ss_dssp TCCSSSCCEEEEEECCCT
T ss_pred CCccCCCCceEEEEeccC
Confidence 43 3899999864
No 149
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.87 E-value=1e-20 Score=230.24 Aligned_cols=298 Identities=10% Similarity=-0.014 Sum_probs=214.9
Q ss_pred CCCCEEEEEEc-CCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCcc-CeEEE
Q 005277 350 THNGLNCASIS-QDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG-PVYSA 427 (704)
Q Consensus 350 ~~~~V~~~~fs-~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~l 427 (704)
|...+.+++|| |||++||+++ ++.|.+|++... ....+..|.+ .+.++
T Consensus 294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~ 343 (1045)
T 1k32_A 294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGT-----------------------------YVLKVPEPLRIRYVRR 343 (1045)
T ss_dssp ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSS-----------------------------BEEECSCCSCEEEEEE
T ss_pred cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCC-----------------------------ceEEccCCCcceEEee
Confidence 34479999999 9999999987 889999987641 1223456666 89999
Q ss_pred EEcCCCCEEEEEeCCCeEE-EEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCC
Q 005277 428 SFSPLGDFILSSSADTTIR-LWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS 506 (704)
Q Consensus 428 ~~sp~~~~l~s~s~Dg~I~-lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~ 506 (704)
+|+ +++.|++++.++.+. +|++.++.... +.+|...+..++|+|+|+++++++.++.|++||+.+++......+|..
T Consensus 344 ~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~ 421 (1045)
T 1k32_A 344 GGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREA 421 (1045)
T ss_dssp CSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSS
T ss_pred eEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCC
Confidence 999 999999998888898 99998766543 447888999999999999999999999999999999988888878999
Q ss_pred CeeEEEEcCCCCEEEEEECCC----------cEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 005277 507 DVDCVRWHINCNYIATGSSDK----------TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576 (704)
Q Consensus 507 ~V~~v~~~p~~~~l~tgs~dg----------~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl 576 (704)
.+.+++|+|+|++|++++.++ .|++||+.+++ +..+..|...+.+++|+|||++|++++.++...+|+.
T Consensus 422 ~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~ 500 (1045)
T 1k32_A 422 MITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDR 500 (1045)
T ss_dssp CCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred CccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcch
Confidence 999999999999999887654 89999999887 6667788888999999999999999999999999987
Q ss_pred CCCeeeeeecCCCceeeeeeeee--------eehccccccccccccc---cceee-eeeeEEeecccCCCCCEEEE----
Q 005277 577 ASGRCVTPLMGHTSCVWTLAYRF--------LLLVTNAYLKISDKVS---TGFLF-YSLTIIYFGCASCEGSLLAS---- 640 (704)
Q Consensus 577 ~~~~~~~~~~~h~~~V~sl~~~~--------~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~s~~g~~las---- 640 (704)
...... ..+...++.+.+.. ...........+.... ..... .....+...+++++|.++++
T Consensus 501 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~ 577 (1045)
T 1k32_A 501 VVLNFS---FEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVH 577 (1045)
T ss_dssp SSSCEE---CCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCC
T ss_pred hccccc---cccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEeccc
Confidence 644321 11223333332210 0000000000000000 00000 00112223344899987775
Q ss_pred ---------EeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277 641 ---------GSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 702 (704)
Q Consensus 641 ---------gs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg 702 (704)
.+..+.|.+||+.++... .+. ..|.+++|||||+.|++++.++
T Consensus 578 g~~~~~~~~~~~~~~l~~~d~~~~~~~----------------~l~---~~v~~~~~S~DG~~l~~~~~~~ 629 (1045)
T 1k32_A 578 GEFAAYYQGAPEKGVLLKYDVKTRKVT----------------EVK---NNLTDLRLSADRKTVMVRKDDG 629 (1045)
T ss_dssp CSHHHHHHCCCCCEEEEEEETTTCCEE----------------EEE---EEEEEEEECTTSCEEEEEETTS
T ss_pred CcccccccccCCCceEEEEECCCCcEE----------------Eee---cCcceEEECCCCCEEEEEcCCc
Confidence 123457888888776421 111 5688999999999999987663
No 150
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.87 E-value=5.2e-20 Score=194.89 Aligned_cols=253 Identities=7% Similarity=0.083 Sum_probs=179.2
Q ss_pred CeEEEEEeeCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeecc
Q 005277 341 SVSFYTFINTHNGLNCASISQDGSLVAGGFS--DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ 418 (704)
Q Consensus 341 ~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~--dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (704)
.........+...+..++|+|||++++++.. ++.|.+|++.... ......+.
T Consensus 29 ~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~--------------------------~~~~~~~~ 82 (347)
T 3hfq_A 29 TLTNDGLLAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQT--------------------------AHKLNTVV 82 (347)
T ss_dssp EEEEEEEEEECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTE--------------------------EEEEEEEE
T ss_pred eEEEeeeeeccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCc--------------------------EEEeeeee
Confidence 3334445566677889999999994444432 6899999986421 11223334
Q ss_pred CCccCeEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCce---eEEeec---------CCcCeeEEEEcCCCCEEEEEeCCC
Q 005277 419 GHSGPVYSASFSPLGDFILSSS-ADTTIRLWSTKLNAN---LVCYKG---------HNYPVWDVQFNPQGHYFASSSHDR 485 (704)
Q Consensus 419 ~h~~~V~~l~~sp~~~~l~s~s-~Dg~I~lwd~~~~~~---~~~~~~---------h~~~V~~v~~sp~~~~l~sgs~dg 485 (704)
.+...+..++|+|++++|++++ .+++|.+|++..... +..+.. +...+.+++|+|+|++++++..++
T Consensus 83 ~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~ 162 (347)
T 3hfq_A 83 APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSD 162 (347)
T ss_dssp EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTT
T ss_pred cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCC
Confidence 4667788999999999988887 789999999963322 222221 122488999999999666667789
Q ss_pred eEEEEECC-CCceeE--Eecc-CCCCeeEEEEcCCCCEEEEE-ECCCcEEEEeCCC--CcE--EEEeecCC------CCE
Q 005277 486 TARIWSMD-RIQPLR--IMAG-HLSDVDCVRWHINCNYIATG-SSDKTVRLWDVSS--GEC--VRIFIGHR------SMI 550 (704)
Q Consensus 486 ~i~lwd~~-~~~~~~--~~~~-~~~~V~~v~~~p~~~~l~tg-s~dg~I~iwd~~~--~~~--~~~~~~h~------~~i 550 (704)
.|.+|+++ +++... .+.. ....+..++|+|+|++++++ ..++.|.+|++.. ++. +..+.... ..+
T Consensus 163 ~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 242 (347)
T 3hfq_A 163 KVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGA 242 (347)
T ss_dssp EEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEE
T ss_pred EEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcc
Confidence 99999998 443322 2222 23467889999999977664 5688999999874 543 22232222 458
Q ss_pred EEEEEecCCCEEE-EEeCCCeEEEEeCCC---CeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEE
Q 005277 551 LSLAMSPDGRYMA-SGDEDGTIMMWDLAS---GRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTII 626 (704)
Q Consensus 551 ~~l~~spdg~~l~-sg~~dg~I~iwdl~~---~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (704)
..++|+|||++|+ ++..++.|.+||+.. .+.+..+..+...+..++|
T Consensus 243 ~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~----------------------------- 293 (347)
T 3hfq_A 243 AAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDL----------------------------- 293 (347)
T ss_dssp EEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEE-----------------------------
T ss_pred eeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEE-----------------------------
Confidence 8999999999874 556789999999972 2555666666667788888
Q ss_pred eecccCCCCCEEEEEeC-CCcEEEEeCC
Q 005277 627 YFGCASCEGSLLASGSA-DCTVKLWDVT 653 (704)
Q Consensus 627 ~~~~~s~~g~~lasgs~-Dg~V~iWd~~ 653 (704)
+|+|++|++++. ++.|.+|++.
T Consensus 294 -----spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 294 -----DPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp -----CTTSSEEEEEETTTTEEEEEEEC
T ss_pred -----CCCCCEEEEEEcCCCcEEEEEEe
Confidence 999998888775 4899999554
No 151
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.87 E-value=4.3e-21 Score=210.13 Aligned_cols=242 Identities=14% Similarity=0.144 Sum_probs=175.6
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----------ceeE-----EeecCCcCeeEEEEcCCCCEEE----EEe
Q 005277 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLN----------ANLV-----CYKGHNYPVWDVQFNPQGHYFA----SSS 482 (704)
Q Consensus 422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~----------~~~~-----~~~~h~~~V~~v~~sp~~~~l~----sgs 482 (704)
..++.+++++++.++++++.|+ +++|+.... ..+. ....+...|.+++|+|+|++|+ +|+
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs 115 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE 115 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence 4578899999999999999988 888875311 0111 1123567899999999999999 788
Q ss_pred CCCeEEEEECCCC--------ce---eEEeccCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCE
Q 005277 483 HDRTARIWSMDRI--------QP---LRIMAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMI 550 (704)
Q Consensus 483 ~dg~i~lwd~~~~--------~~---~~~~~~~~~~V~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i 550 (704)
.|++|++||+++. ++ +..+.+|...|.+++|+|+ +++|++++.||+|++||++++..+....+|...|
T Consensus 116 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v 195 (434)
T 2oit_A 116 YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAV 195 (434)
T ss_dssp TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCE
T ss_pred CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCce
Confidence 8999999998654 22 4556679999999999998 8999999999999999999998777777899999
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCC-------Cceeeeeeeeeeehccccccccccccccceeeeee
Q 005277 551 LSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH-------TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSL 623 (704)
Q Consensus 551 ~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h-------~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (704)
++++|+|+|++|++|+.||.|++||++ ++....+..| ...|.++.|
T Consensus 196 ~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w-------------------------- 248 (434)
T 2oit_A 196 TSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLW-------------------------- 248 (434)
T ss_dssp EEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEE--------------------------
T ss_pred eEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEE--------------------------
Confidence 999999999999999999999999998 5555555433 337888888
Q ss_pred eEEeecccCCCCCEEEE-EeCCCc------EEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEE
Q 005277 624 TIIYFGCASCEGSLLAS-GSADCT------VKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFA 696 (704)
Q Consensus 624 ~~~~~~~~s~~g~~las-gs~Dg~------V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La 696 (704)
++++.++++ ++.||. +++|++.+......... .........+.....+-+.+.+-++..+++
T Consensus 249 --------~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~---~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~ 317 (434)
T 2oit_A 249 --------IGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIF---VNFMEPCYGSCTERQHHYYLSYIEEWDLVL 317 (434)
T ss_dssp --------EETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEE---EECCCSSCCCCSSSCCCEEEEEEGGGTEEE
T ss_pred --------ecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcce---EecccCCCCCCCCcCcceeeehhccCCEEE
Confidence 777766644 334443 99999986532100000 000011111123344444455557777777
Q ss_pred EeecCC
Q 005277 697 AGALSK 702 (704)
Q Consensus 697 ~gs~dg 702 (704)
+++...
T Consensus 318 v~s~~s 323 (434)
T 2oit_A 318 AASAAS 323 (434)
T ss_dssp EEETTC
T ss_pred EecCCC
Confidence 776543
No 152
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.87 E-value=1.3e-20 Score=219.36 Aligned_cols=280 Identities=12% Similarity=0.110 Sum_probs=193.1
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEcccCCc--cccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcC
Q 005277 354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQ--QAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (704)
Q Consensus 354 V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 431 (704)
+..+.|+ |..+++++.+| | +||+.+... ........... . ..... . ....+...|.+++|+|
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~------~-l~~~~---~--~~~~~~~~v~~~~~sp 91 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNA------L-MPEGC---K--FQTTDAFPSFRTLDAG 91 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHT------T-C----------------CCCEEEEETT
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhh------h-ccchh---c--cccccccCceeEEECC
Confidence 4456777 66777777788 8 999876433 11110000000 0 00000 0 0112335799999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCC-----CceeEEeccCCC
Q 005277 432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR-----IQPLRIMAGHLS 506 (704)
Q Consensus 432 ~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~-----~~~~~~~~~~~~ 506 (704)
+ ..++.+. +++|++||+.+++.. .+..+...+.+++|+|+|++++++ .++.|++||+.+ ++..+....+..
T Consensus 92 d-~~~~~~~-~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~ 167 (706)
T 2z3z_A 92 R-GLVVLFT-QGGLVGFDMLARKVT-YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTE 167 (706)
T ss_dssp T-TEEEEEE-TTEEEEEETTTTEEE-EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBT
T ss_pred C-CeEEEEE-CCEEEEEECCCCceE-EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCC
Confidence 9 6666554 599999999887654 445567789999999999999985 679999999998 776665544444
Q ss_pred C--------------eeEEEEcCCCCEEEEEE---------------------------------CCCcEEEEeCCCCcE
Q 005277 507 D--------------VDCVRWHINCNYIATGS---------------------------------SDKTVRLWDVSSGEC 539 (704)
Q Consensus 507 ~--------------V~~v~~~p~~~~l~tgs---------------------------------~dg~I~iwd~~~~~~ 539 (704)
. +.+++|+|+|++|++++ .+..|++||+.+++.
T Consensus 168 ~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~ 247 (706)
T 2z3z_A 168 TLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT 247 (706)
T ss_dssp TEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE
T ss_pred CeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce
Confidence 3 48999999999999987 456799999999887
Q ss_pred EEEee--cCCCCEEEEEEecCCCEEEEEeCCC-----eEEEEeCCCCeeeeeec--CCCc---eeeeeeeeeeehccccc
Q 005277 540 VRIFI--GHRSMILSLAMSPDGRYMASGDEDG-----TIMMWDLASGRCVTPLM--GHTS---CVWTLAYRFLLLVTNAY 607 (704)
Q Consensus 540 ~~~~~--~h~~~i~~l~~spdg~~l~sg~~dg-----~I~iwdl~~~~~~~~~~--~h~~---~V~sl~~~~~~~~~~~~ 607 (704)
..... .|...+.+++|+|||++|++++.++ .|.+||+.+++....+. .+.. .+.++.|
T Consensus 248 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~---------- 317 (706)
T 2z3z_A 248 VYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTF---------- 317 (706)
T ss_dssp EECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEE----------
T ss_pred EeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCcee----------
Confidence 65543 4667899999999999999988775 99999999984333332 1221 2355667
Q ss_pred cccccccccceeeeeeeEEeecccCC--CCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEE
Q 005277 608 LKISDKVSTGFLFYSLTIIYFGCASC--EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYS 685 (704)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~s~--~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~ 685 (704)
+| +|+++++++.||.++||.+..... .+..+..+...|..
T Consensus 318 ------------------------sp~~dg~~l~~~~~~g~~~l~~~~~~~~--------------~~~~l~~~~~~v~~ 359 (706)
T 2z3z_A 318 ------------------------LPGSNNQFIWQSRRDGWNHLYLYDTTGR--------------LIRQVTKGEWEVTN 359 (706)
T ss_dssp ------------------------CTTCSSEEEEEECTTSSCEEEEEETTSC--------------EEEECCCSSSCEEE
T ss_pred ------------------------ecCCCCEEEEEEccCCccEEEEEECCCC--------------EEEecCCCCeEEEe
Confidence 99 999999999999999998863211 13344456667876
Q ss_pred -EEEccCCcEEEEeecC
Q 005277 686 -LQFSRRNLLFAAGALS 701 (704)
Q Consensus 686 -l~fs~~g~~La~gs~d 701 (704)
+.|+|+|..|++++.+
T Consensus 360 ~~~~spdg~~l~~~~~~ 376 (706)
T 2z3z_A 360 FAGFDPKGTRLYFESTE 376 (706)
T ss_dssp EEEECTTSSEEEEEESS
T ss_pred eeEEcCCCCEEEEEecC
Confidence 8999999877666554
No 153
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.86 E-value=2.8e-20 Score=194.91 Aligned_cols=255 Identities=11% Similarity=0.130 Sum_probs=191.0
Q ss_pred CEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeecc-CCcc-CeEEEEEcCCCCEEE-EEe
Q 005277 364 SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ-GHSG-PVYSASFSPLGDFIL-SSS 440 (704)
Q Consensus 364 ~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~-~V~~l~~sp~~~~l~-s~s 440 (704)
++|++++.++.|.+||+.+.. ....+. ++.. .+.+++|+|++++++ +++
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~----------------------------~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~ 53 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMA----------------------------VDKVITIADAGPTPMVPMVAPGGRIAYATVN 53 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTE----------------------------EEEEEECTTCTTCCCCEEECTTSSEEEEEET
T ss_pred cEEEEcCCCCeEEEEECCCCc----------------------------EEEEEEcCCCCCCccceEEcCCCCEEEEEeC
Confidence 478999999999999987521 112221 2222 478899999998765 566
Q ss_pred CCCeEEEEeCCCCceeEEeecC-----CcCeeEEEEcCCCCEEEEEe------------CCCeEEEEECCCCceeEEecc
Q 005277 441 ADTTIRLWSTKLNANLVCYKGH-----NYPVWDVQFNPQGHYFASSS------------HDRTARIWSMDRIQPLRIMAG 503 (704)
Q Consensus 441 ~Dg~I~lwd~~~~~~~~~~~~h-----~~~V~~v~~sp~~~~l~sgs------------~dg~i~lwd~~~~~~~~~~~~ 503 (704)
.++.|.+||+.+++.+..+... ...+.+++|+|+|+++++++ .++.|.+||+.+++.+..+..
T Consensus 54 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~ 133 (337)
T 1pby_B 54 KSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA 133 (337)
T ss_dssp TTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC
T ss_pred CCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC
Confidence 6889999999999887766532 22677899999999998886 579999999999888777764
Q ss_pred CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCC--------------
Q 005277 504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG-------------- 569 (704)
Q Consensus 504 ~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg-------------- 569 (704)
...+.+++|+|++++|+++ ++.|++||+.+++.+..+..+... ..+.|+|+|+.++..+..+
T Consensus 134 -~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~ 209 (337)
T 1pby_B 134 -PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDI 209 (337)
T ss_dssp -CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTS
T ss_pred -CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeecccccc
Confidence 4568889999999988888 689999999999988777654311 1337899998776554332
Q ss_pred ----------eEEEEeCCCCeee-eeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEE
Q 005277 570 ----------TIMMWDLASGRCV-TPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLL 638 (704)
Q Consensus 570 ----------~I~iwdl~~~~~~-~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l 638 (704)
.|.+||+.+++.. ..+..+...+.++.| +|+|+++
T Consensus 210 ~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~----------------------------------s~dg~~l 255 (337)
T 1pby_B 210 DPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAV----------------------------------NPAKTRA 255 (337)
T ss_dssp CTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEE----------------------------------CTTSSEE
T ss_pred ccccccccccceEEEeCCCCCceEeecCCCCCceeeEEE----------------------------------CCCCCEE
Confidence 4689999988764 223345556677788 9999999
Q ss_pred EEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277 639 ASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 702 (704)
Q Consensus 639 asgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg 702 (704)
+++ ++.|++||+.+++.. ..+.. ...+.+++|+|+|.+|++++.++
T Consensus 256 ~~~--~~~v~~~d~~~~~~~---------------~~~~~-~~~~~~~~~s~dg~~l~~~~~~~ 301 (337)
T 1pby_B 256 FGA--YNVLESFDLEKNASI---------------KRVPL-PHSYYSVNVSTDGSTVWLGGALG 301 (337)
T ss_dssp EEE--ESEEEEEETTTTEEE---------------EEEEC-SSCCCEEEECTTSCEEEEESBSS
T ss_pred EEe--CCeEEEEECCCCcCc---------------ceecC-CCceeeEEECCCCCEEEEEcCCC
Confidence 888 799999999876532 12221 23578999999999888887654
No 154
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.86 E-value=5.8e-20 Score=192.52 Aligned_cols=260 Identities=12% Similarity=0.092 Sum_probs=192.5
Q ss_pred CeEeecCCCCCCeEEEEEeeCCC---CEEEEEEcCCCCEE-EEEeCCCcEEEEEcccCCccccccccCCCCCCCCccccc
Q 005277 330 NRVHLSSAALPSVSFYTFINTHN---GLNCASISQDGSLV-AGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII 405 (704)
Q Consensus 330 ~~~~l~~~~~p~~~~~~~~~~~~---~V~~~~fs~dg~~l-asg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (704)
..+.+++....... ....... .+.+++|+|+|+.+ +++..++.|.+||+.+.....
T Consensus 11 ~~v~~~d~~~~~~~--~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~------------------ 70 (337)
T 1pby_B 11 DKLVVIDTEKMAVD--KVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLG------------------ 70 (337)
T ss_dssp TEEEEEETTTTEEE--EEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEE------------------
T ss_pred CeEEEEECCCCcEE--EEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEe------------------
Confidence 35566654433222 2222333 58899999999765 455567899999987532111
Q ss_pred CCCCCccceeeccC----CccCeEEEEEcCCCCEEEEEe------------CCCeEEEEeCCCCceeEEeecCCcCeeEE
Q 005277 406 GPNGRKRSYTLYQG----HSGPVYSASFSPLGDFILSSS------------ADTTIRLWSTKLNANLVCYKGHNYPVWDV 469 (704)
Q Consensus 406 ~~~~~~~~~~~~~~----h~~~V~~l~~sp~~~~l~s~s------------~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v 469 (704)
....+ |...+.+++|+|++++|++++ .++.|.+||+.+++.+..+.. ...+.++
T Consensus 71 ---------~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~ 140 (337)
T 1pby_B 71 ---------RIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITML 140 (337)
T ss_dssp ---------EEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCE
T ss_pred ---------eEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCccee
Confidence 00011 233577899999999988886 579999999998888777764 4567889
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCC----------------------
Q 005277 470 QFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDK---------------------- 527 (704)
Q Consensus 470 ~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg---------------------- 527 (704)
+|+|+|++++++ ++.|.+||+.+++.+..+..+.. ...+.|+|++.++++++..+
T Consensus 141 ~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (337)
T 1pby_B 141 AWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAY 217 (337)
T ss_dssp EECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGE
T ss_pred EECCCCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeecccccccccccccc
Confidence 999999988888 68999999999988777764431 11337889988776554332
Q ss_pred --cEEEEeCCCCcEE-EEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehcc
Q 005277 528 --TVRLWDVSSGECV-RIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVT 604 (704)
Q Consensus 528 --~I~iwd~~~~~~~-~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~ 604 (704)
.|.+||+.+++.. ..+..+...+.+++|+|+|++++++ ++.|.+||+.+++.+..+..+ ..+.++.|
T Consensus 218 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~------- 287 (337)
T 1pby_B 218 RTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNV------- 287 (337)
T ss_dssp EEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEE-------
T ss_pred ccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEE-------
Confidence 4689999998774 2234566778999999999999988 789999999999888777643 45677788
Q ss_pred ccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccc
Q 005277 605 NAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVL 659 (704)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~ 659 (704)
+|+|++|++++.++.|++||+.+++...
T Consensus 288 ---------------------------s~dg~~l~~~~~~~~i~v~d~~~~~~~~ 315 (337)
T 1pby_B 288 ---------------------------STDGSTVWLGGALGDLAAYDAETLEKKG 315 (337)
T ss_dssp ---------------------------CTTSCEEEEESBSSEEEEEETTTCCEEE
T ss_pred ---------------------------CCCCCEEEEEcCCCcEEEEECcCCcEEE
Confidence 9999999999999999999999876543
No 155
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.86 E-value=1e-18 Score=186.10 Aligned_cols=244 Identities=12% Similarity=0.148 Sum_probs=173.4
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCC----CcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277 350 THNGLNCASISQDGSLVAGGFSD----SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (704)
Q Consensus 350 ~~~~V~~~~fs~dg~~lasg~~d----g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (704)
+...+..++|+|||++|++++.+ +.|.+|+++... +..........+.....
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~------------------------g~~~~~~~~~~~~~~p~ 103 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEK------------------------GTLHLLNTQKTMGADPC 103 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTT------------------------TEEEEEEEEECSSSCEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCC------------------------CcEEEeeEeccCCCCcE
Confidence 66778889999999999999876 899999987521 00112222333445667
Q ss_pred EEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeEEe------ec--------CCcCeeEEEEcCCCCEEEEEe-CCCeEEE
Q 005277 426 SASFSPLGDFILSSS-ADTTIRLWSTKLNANLVCY------KG--------HNYPVWDVQFNPQGHYFASSS-HDRTARI 489 (704)
Q Consensus 426 ~l~~sp~~~~l~s~s-~Dg~I~lwd~~~~~~~~~~------~~--------h~~~V~~v~~sp~~~~l~sgs-~dg~i~l 489 (704)
.+++ ++++|++++ .+++|.+|++.....+... .+ +...+.+++|+|+|+++++++ .++.+.+
T Consensus 104 ~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v 181 (361)
T 3scy_A 104 YLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHK 181 (361)
T ss_dssp EEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred EEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEE
Confidence 7787 788777665 6889999999754433211 11 123357899999999776655 5899999
Q ss_pred EECCCCce------e-------EEeccCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCcEE--EEe---ecCCCCE
Q 005277 490 WSMDRIQP------L-------RIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECV--RIF---IGHRSMI 550 (704)
Q Consensus 490 wd~~~~~~------~-------~~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~--~~~---~~h~~~i 550 (704)
|+++.... + .....+...+.+++|+|+|+++++++ .++.|.+||+.++... ..+ ..+...+
T Consensus 182 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~ 261 (361)
T 3scy_A 182 FNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGS 261 (361)
T ss_dssp EEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCE
T ss_pred EEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCc
Confidence 99875431 1 22233456688999999999888877 6899999999877542 222 2333557
Q ss_pred EEEEEecCCCEEEEEeC--CCeEEEEeCC--CCe--eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeee
Q 005277 551 LSLAMSPDGRYMASGDE--DGTIMMWDLA--SGR--CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLT 624 (704)
Q Consensus 551 ~~l~~spdg~~l~sg~~--dg~I~iwdl~--~~~--~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (704)
.+++|+|||++|+++.. ++.|.+|++. +++ .+..+.. ...+..++|
T Consensus 262 ~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~--------------------------- 313 (361)
T 3scy_A 262 GDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFII--------------------------- 313 (361)
T ss_dssp EEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEE---------------------------
T ss_pred ccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEE---------------------------
Confidence 89999999999877665 4899999985 444 3444444 455677788
Q ss_pred EEeecccCCCCCEEEEEe-CCCcEEEEeCCC
Q 005277 625 IIYFGCASCEGSLLASGS-ADCTVKLWDVTT 654 (704)
Q Consensus 625 ~~~~~~~s~~g~~lasgs-~Dg~V~iWd~~~ 654 (704)
+|+|++|++++ .++.|.+|++..
T Consensus 314 -------spdg~~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 314 -------TPNGKYLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp -------CTTSCEEEEEETTTTEEEEEEECT
T ss_pred -------CCCCCEEEEEECCCCCEEEEEEEC
Confidence 99999888887 678999976653
No 156
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.85 E-value=1.3e-19 Score=190.93 Aligned_cols=234 Identities=13% Similarity=0.088 Sum_probs=180.0
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCC-ccCeEEEEEcCCCC
Q 005277 356 CASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH-SGPVYSASFSPLGD 434 (704)
Q Consensus 356 ~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~sp~~~ 434 (704)
.+++++++.++++++.++.|.+||+.+.. ....+..+ ...+..++|+|+++
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~----------------------------~~~~~~~~~~~~~~~~~~s~dg~ 55 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDT----------------------------VYKSCVMPDKFGPGTAMMAPDNR 55 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTE----------------------------EEEEEECSSCCSSCEEEECTTSS
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCc----------------------------EEEEEecCCCCCCceeEECCCCC
Confidence 45688899999999999999999987521 12222222 12567899999998
Q ss_pred EEE-EEeCCCeEEEEeCCCCceeEEeecCC------cCeeEEEEcCCCCEEEEEeCC------------CeEEEEECCCC
Q 005277 435 FIL-SSSADTTIRLWSTKLNANLVCYKGHN------YPVWDVQFNPQGHYFASSSHD------------RTARIWSMDRI 495 (704)
Q Consensus 435 ~l~-s~s~Dg~I~lwd~~~~~~~~~~~~h~------~~V~~v~~sp~~~~l~sgs~d------------g~i~lwd~~~~ 495 (704)
+++ ++..++.|.+||+.+++.+..+..+. ..+.+++|+|+|+++++++.+ +.|.+||+.++
T Consensus 56 ~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 135 (349)
T 1jmx_B 56 TAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADG 135 (349)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGG
T ss_pred EEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCc
Confidence 665 55678999999999988877766332 237899999999999998865 89999999874
Q ss_pred c---eeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCC-------------------------
Q 005277 496 Q---PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR------------------------- 547 (704)
Q Consensus 496 ~---~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~------------------------- 547 (704)
+ .+..+. +...+.+++|+|+++ +++++ +.|++||+.+++.+..+..+.
T Consensus 136 ~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (349)
T 1jmx_B 136 LEAKPVRTFP-MPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFS 211 (349)
T ss_dssp GGBCCSEEEE-CCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEE
T ss_pred cccceeeecc-CCCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEE
Confidence 3 334444 334688999999999 65553 449999999988777654331
Q ss_pred -------------------------------------------CCEEEEEEec-CCCEEEEEeCCCeEEEEeCCCCeeee
Q 005277 548 -------------------------------------------SMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVT 583 (704)
Q Consensus 548 -------------------------------------------~~i~~l~~sp-dg~~l~sg~~dg~I~iwdl~~~~~~~ 583 (704)
..+.+++|+| +|++++++ ++.|.+||+.+++.+.
T Consensus 212 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~ 289 (349)
T 1jmx_B 212 MLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIK 289 (349)
T ss_dssp EEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEE
T ss_pred eeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEE
Confidence 1345678889 99999888 8899999999998887
Q ss_pred eecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccc
Q 005277 584 PLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKV 658 (704)
Q Consensus 584 ~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~ 658 (704)
.+... ..+.++.| +++|++|++++.++.|++||+.+++.+
T Consensus 290 ~~~~~-~~~~~~~~----------------------------------s~dg~~l~~~~~~~~v~v~d~~~~~~~ 329 (349)
T 1jmx_B 290 AANLD-HTYYCVAF----------------------------------DKKGDKLYLGGTFNDLAVFNPDTLEKV 329 (349)
T ss_dssp EEECS-SCCCEEEE----------------------------------CSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred EEcCC-CCccceEE----------------------------------CCCCCEEEEecCCCeEEEEecccccee
Confidence 77533 34667888 999998888888999999999887654
No 157
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.85 E-value=3e-19 Score=189.00 Aligned_cols=236 Identities=14% Similarity=0.152 Sum_probs=167.9
Q ss_pred CCccCeEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCc--eeEEeecCCcCeeEEEEcCCCCEEEEEe-CCCeEEEEEC
Q 005277 419 GHSGPVYSASFSPLGDFILSSSA---DTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWSM 492 (704)
Q Consensus 419 ~h~~~V~~l~~sp~~~~l~s~s~---Dg~I~lwd~~~~~--~~~~~~~h~~~V~~v~~sp~~~~l~sgs-~dg~i~lwd~ 492 (704)
.+...+..++|+|+++ |++++. ++.|.+|++.++. .+..+..+...+..++|+|+|+++++++ .++.+.+|++
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~ 115 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKI 115 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence 3456678899999999 665544 6899999997665 3444455777889999999999988888 7899999999
Q ss_pred CCC---ceeEEecc---------CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC-CCcEEE--Eeec-CCCCEEEEEEe
Q 005277 493 DRI---QPLRIMAG---------HLSDVDCVRWHINCNYIATGSSDKTVRLWDVS-SGECVR--IFIG-HRSMILSLAMS 556 (704)
Q Consensus 493 ~~~---~~~~~~~~---------~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~-~~~~~~--~~~~-h~~~i~~l~~s 556 (704)
+.. ..+..+.. +...+.+++|+|+|++++++..++.|++||+. +++... .+.. ....+..++|+
T Consensus 116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~s 195 (347)
T 3hfq_A 116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFS 195 (347)
T ss_dssp CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEEC
T ss_pred CCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEEC
Confidence 632 22333321 12347889999999966666678899999998 554332 2222 23367889999
Q ss_pred cCCCEEEE-EeCCCeEEEEeCCC--Cee--eeeecCCC------ceeeeeeeeeeehccccccccccccccceeeeeeeE
Q 005277 557 PDGRYMAS-GDEDGTIMMWDLAS--GRC--VTPLMGHT------SCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTI 625 (704)
Q Consensus 557 pdg~~l~s-g~~dg~I~iwdl~~--~~~--~~~~~~h~------~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (704)
|||++|++ +..++.|.+|++.. ++. +..+.... ..+..+.|
T Consensus 196 pdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~---------------------------- 247 (347)
T 3hfq_A 196 PDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRL---------------------------- 247 (347)
T ss_dssp TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEE----------------------------
T ss_pred CCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEE----------------------------
Confidence 99996665 56788999999874 443 22222211 34566666
Q ss_pred EeecccCCCCCEE-EEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecC
Q 005277 626 IYFGCASCEGSLL-ASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS 701 (704)
Q Consensus 626 ~~~~~~s~~g~~l-asgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~d 701 (704)
+|+|++| +++..++.|.+|++..... ...+..++.+...+..++|+|+|++|++++.+
T Consensus 248 ------spdG~~l~v~~~~~~~v~v~~~~~~g~------------~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~ 306 (347)
T 3hfq_A 248 ------SHDGHFLYVSNRGYNTLAVFAVTADGH------------LTLIQQISTEGDFPRDFDLDPTEAFVVVVNQN 306 (347)
T ss_dssp ------CTTSCEEEEEEETTTEEEEEEECGGGC------------EEEEEEEECSSSCCCEEEECTTSSEEEEEETT
T ss_pred ------CCCCCEEEEEeCCCCEEEEEEECCCCc------------EEEeEEEecCCCCcCeEEECCCCCEEEEEEcC
Confidence 9999977 5566789999999874221 12344555556668899999999988887765
No 158
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.85 E-value=9.1e-19 Score=184.97 Aligned_cols=243 Identities=11% Similarity=-0.024 Sum_probs=179.1
Q ss_pred eEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCC
Q 005277 331 RVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVA-GGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG 409 (704)
Q Consensus 331 ~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~la-sg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (704)
.+.+++........ .......+.+++|+|+|++++ ++..++.|.+||..+............
T Consensus 70 ~v~~~d~~~~~~~~--~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~--------------- 132 (353)
T 3vgz_A 70 VVYRLDPVTLEVTQ--AIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDR--------------- 132 (353)
T ss_dssp EEEEECTTTCCEEE--EEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCC---------------
T ss_pred cEEEEcCCCCeEEE--EEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCC---------------
Confidence 45555544333222 223345578899999999555 455579999999876322111000000
Q ss_pred CccceeeccCCccCeEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeE
Q 005277 410 RKRSYTLYQGHSGPVYSASFSPLGDFILSSS--ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTA 487 (704)
Q Consensus 410 ~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s--~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i 487 (704)
..........+.+++|+|+++++++++ .++.|.+||..+++.+..+..+...+.+++|+|+|+++++++.++.+
T Consensus 133 ----~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i 208 (353)
T 3vgz_A 133 ----KRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGEL 208 (353)
T ss_dssp ----CCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEE
T ss_pred ----ccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeE
Confidence 000000111368899999999887665 47899999999999888887666678899999999999999999999
Q ss_pred EEEECCCCceeEEecc----CCCCeeEEEEcCCCCEEEEEECC-CcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEE
Q 005277 488 RIWSMDRIQPLRIMAG----HLSDVDCVRWHINCNYIATGSSD-KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYM 562 (704)
Q Consensus 488 ~lwd~~~~~~~~~~~~----~~~~V~~v~~~p~~~~l~tgs~d-g~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l 562 (704)
.+||+.+++.+..+.. +...+.+++|+|+++++++++.+ +.|.+||+.+++.+..+..... .+++|+|+|+++
T Consensus 209 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~s~dg~~l 286 (353)
T 3vgz_A 209 ITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES--LAVLFNPARNEA 286 (353)
T ss_dssp EEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC--CCEEEETTTTEE
T ss_pred EEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--ceEEECCCCCEE
Confidence 9999999988877654 45567889999999988777654 9999999999998887765432 579999999976
Q ss_pred EEEe-CCCeEEEEeCCCCeeeeeecCCCceeeeeee
Q 005277 563 ASGD-EDGTIMMWDLASGRCVTPLMGHTSCVWTLAY 597 (704)
Q Consensus 563 ~sg~-~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~ 597 (704)
++++ .++.|.+||+.+++.+..+..+. .+.++.|
T Consensus 287 ~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~ 321 (353)
T 3vgz_A 287 YVTHRQAGKVSVIDAKSYKVVKTFDTPT-HPNSLAL 321 (353)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECCS-EEEEEEE
T ss_pred EEEECCCCeEEEEECCCCeEEEEEecCC-CCCeEEE
Confidence 6555 78999999999999888776543 6678888
No 159
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.84 E-value=2.3e-19 Score=192.68 Aligned_cols=289 Identities=11% Similarity=-0.007 Sum_probs=191.2
Q ss_pred EEEEeeCCCCEEE-----EEEcCCCCEEEEEeC-CCc--EEEEEcccCCccccccccCCCCCCCCcccccCCCCCcccee
Q 005277 344 FYTFINTHNGLNC-----ASISQDGSLVAGGFS-DSS--LKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYT 415 (704)
Q Consensus 344 ~~~~~~~~~~V~~-----~~fs~dg~~lasg~~-dg~--I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (704)
...+..+...... .+|||||++||.++. +|. |.+||+.+. ....
T Consensus 23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g----------------------------~~~~ 74 (388)
T 3pe7_A 23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ----------------------------VATQ 74 (388)
T ss_dssp EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTC----------------------------EEEE
T ss_pred eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCC----------------------------ceEE
Confidence 3344555555555 789999999999987 675 666676541 2223
Q ss_pred eccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEE--EcCCCCEEEEE------------
Q 005277 416 LYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQ--FNPQGHYFASS------------ 481 (704)
Q Consensus 416 ~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~--~sp~~~~l~sg------------ 481 (704)
...+|...+.++.|+||++.|+.++.++.|++||+.+++....+..+...+.... ++|++.+++..
T Consensus 75 lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~ 154 (388)
T 3pe7_A 75 LTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTD 154 (388)
T ss_dssp CCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS
T ss_pred eeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccc
Confidence 3345555566778999999999999999999999999988777776666554444 48999988743
Q ss_pred ----------eCCCeEEEEECCCCceeEEeccCCCCeeEEEEcC-CCCEEEEEECC------CcEEEEeCCCCcEEEEee
Q 005277 482 ----------SHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHI-NCNYIATGSSD------KTVRLWDVSSGECVRIFI 544 (704)
Q Consensus 482 ----------s~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p-~~~~l~tgs~d------g~I~iwd~~~~~~~~~~~ 544 (704)
+.+..|.+||+.+++..... .+...+..++|+| +|+.|+..+.+ ..|.++|...+... .+.
T Consensus 155 ~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~ 232 (388)
T 3pe7_A 155 WKKFHEFYFTKPCCRLMRVDLKTGESTVIL-QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVK 232 (388)
T ss_dssp HHHHHHHGGGCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESC
T ss_pred cchhhhhhccCCcceEEEEECCCCceEEee-cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-Eee
Confidence 24478999999988655444 4667789999999 99999887753 37888888766543 344
Q ss_pred cCC--CCEEEEEEecCCCEEEEEeC-CC----eEEEEeCCCCeee--eeecCCCce---eeeeeeeeeehcccccccccc
Q 005277 545 GHR--SMILSLAMSPDGRYMASGDE-DG----TIMMWDLASGRCV--TPLMGHTSC---VWTLAYRFLLLVTNAYLKISD 612 (704)
Q Consensus 545 ~h~--~~i~~l~~spdg~~l~sg~~-dg----~I~iwdl~~~~~~--~~~~~h~~~---V~sl~~~~~~~~~~~~~~~~~ 612 (704)
.+. ..+..++|+|||+.|+..+. ++ .|++||+.+++.. ..+.++... .....|
T Consensus 233 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~--------------- 297 (388)
T 3pe7_A 233 THAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLM--------------- 297 (388)
T ss_dssp CCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEE---------------
T ss_pred eCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeE---------------
Confidence 444 25788999999997765443 22 3999999988643 233321110 011133
Q ss_pred ccccceeeeeeeEEeecccCCCCCEEEEE---------eCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCe
Q 005277 613 KVSTGFLFYSLTIIYFGCASCEGSLLASG---------SADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPV 683 (704)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~s~~g~~lasg---------s~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V 683 (704)
+|+|+.|+.. ..+..|++||+.++....-.... . .+.. ........+
T Consensus 298 -------------------spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-~--~~~~--~~~~~~~~~ 353 (388)
T 3pe7_A 298 -------------------VGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHD-T--SWKV--FEGDRQVTH 353 (388)
T ss_dssp -------------------EEEECCC------------CCCCEEEEEETTTTEEEEEEECC-C--CCCC--BTTBSSTTC
T ss_pred -------------------ccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEecccc-C--cccc--cccccccCC
Confidence 8888877643 45678999999886431100000 0 0000 000111247
Q ss_pred EEEEEccCCcEEEEeecC
Q 005277 684 YSLQFSRRNLLFAAGALS 701 (704)
Q Consensus 684 ~~l~fs~~g~~La~gs~d 701 (704)
.+++|+|||+.|+.++..
T Consensus 354 ~~~~~spDg~~l~~~s~~ 371 (388)
T 3pe7_A 354 PHPSFTPDDKQILFTSDV 371 (388)
T ss_dssp CCCEECTTSSEEEEEECT
T ss_pred CCccCCCCCCEEEEEecC
Confidence 788999999988877653
No 160
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.84 E-value=3.6e-20 Score=216.27 Aligned_cols=264 Identities=12% Similarity=0.116 Sum_probs=187.5
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCcc---CeEEEEEcCC
Q 005277 356 CASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG---PVYSASFSPL 432 (704)
Q Consensus 356 ~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~sp~ 432 (704)
+++|+|||++++++ .||.|++||+.+.. ....+.+|.. .|.+++||||
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~----------------------------~~~~~~~~~~~~~~~~~~~~SpD 70 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQ----------------------------SYTILSNRTMKSVNASNYGLSPD 70 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCC----------------------------EEEEECHHHHHTTTCSEEEECTT
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCc----------------------------EEEEEccccccccceeeEEECCC
Confidence 56899999766555 69999999987622 2223333333 4899999999
Q ss_pred CCEEEEEeC---------CCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe-c
Q 005277 433 GDFILSSSA---------DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM-A 502 (704)
Q Consensus 433 ~~~l~s~s~---------Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~-~ 502 (704)
|++|++++. +++|++||+.+++.+.... ....+..++|||+|+.|+++. ++.|++|++.+++..+.. .
T Consensus 71 g~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~ 148 (719)
T 1z68_A 71 RQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFN 148 (719)
T ss_dssp SSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCC
T ss_pred CCeEEEEecCceeEEeecceEEEEEECCCCcccccee-cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecC
Confidence 999998876 7899999999887621111 135688999999999999986 789999999887765543 2
Q ss_pred cCCCC-----------------eeEEEEcCCCCEEEEEECCC----------------------------------cEEE
Q 005277 503 GHLSD-----------------VDCVRWHINCNYIATGSSDK----------------------------------TVRL 531 (704)
Q Consensus 503 ~~~~~-----------------V~~v~~~p~~~~l~tgs~dg----------------------------------~I~i 531 (704)
++... ..+++|+|||++|++++.|. .|++
T Consensus 149 ~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~ 228 (719)
T 1z68_A 149 GRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFI 228 (719)
T ss_dssp CBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred CCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEE
Confidence 22222 25899999999999987652 7889
Q ss_pred EeCCCCcEE---EE-----eecCCCCEEEEEEecCCCEEEEEeCC----CeEEEEe----CCCCeeeeee----cCCCce
Q 005277 532 WDVSSGECV---RI-----FIGHRSMILSLAMSPDGRYMASGDED----GTIMMWD----LASGRCVTPL----MGHTSC 591 (704)
Q Consensus 532 wd~~~~~~~---~~-----~~~h~~~i~~l~~spdg~~l~sg~~d----g~I~iwd----l~~~~~~~~~----~~h~~~ 591 (704)
||+.+++.. .. +.+|...+.+++|||||+++++.... ..|.+|| +.+++....+ .+|...
T Consensus 229 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~ 308 (719)
T 1z68_A 229 IDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGW 308 (719)
T ss_dssp EESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSC
T ss_pred EECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCce
Confidence 999988753 21 23578889999999999877775433 3488999 8888776665 467766
Q ss_pred ee-----eeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEE--EeCCC--cEEEEeCCCCccccccc
Q 005277 592 VW-----TLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLAS--GSADC--TVKLWDVTTSTKVLKTE 662 (704)
Q Consensus 592 V~-----sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~las--gs~Dg--~V~iWd~~~~~~~~~~~ 662 (704)
+. .+.| +|+|+.++. +..+| .|.+||+.++.
T Consensus 309 ~~~~~~~~~~~----------------------------------spdg~~l~~~~~~~~g~~~l~~~~~~~~~------ 348 (719)
T 1z68_A 309 AGGFFVSTPVF----------------------------------SYDAISYYKIFSDKDGYKHIHYIKDTVEN------ 348 (719)
T ss_dssp SSSSSCCCCEE----------------------------------CTTSSCEEEEEECTTSCEEEEEESSCSTT------
T ss_pred EccccCCccEE----------------------------------CCCCCeEEEEEEccCCceEEEEEECCCCc------
Confidence 66 6777 999986543 44566 46666665543
Q ss_pred cccCccccccccccCCCCcCeEEEEEccCCcEEEEeecC
Q 005277 663 EKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS 701 (704)
Q Consensus 663 ~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~d 701 (704)
...+..+...|..+.|+ ++..++..+.+
T Consensus 349 ----------~~~lt~~~~~v~~~~~~-d~~~i~~~~~~ 376 (719)
T 1z68_A 349 ----------AIQITSGKWEAINIFRV-TQDSLFYSSNE 376 (719)
T ss_dssp ----------CEECSCSSSCEEEEEEE-CSSEEEEEESC
T ss_pred ----------eEecccCceEEEEEEEE-eCCEEEEEEec
Confidence 11233344557777777 77666655543
No 161
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.84 E-value=2.1e-18 Score=183.61 Aligned_cols=234 Identities=12% Similarity=0.158 Sum_probs=163.9
Q ss_pred CccCeEEEEEcCCCCEEEEEeCC----CeEEEEeCCCC--c--eeEEeecCCcCeeEEEEcCCCCEEEEEe-CCCeEEEE
Q 005277 420 HSGPVYSASFSPLGDFILSSSAD----TTIRLWSTKLN--A--NLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIW 490 (704)
Q Consensus 420 h~~~V~~l~~sp~~~~l~s~s~D----g~I~lwd~~~~--~--~~~~~~~h~~~V~~v~~sp~~~~l~sgs-~dg~i~lw 490 (704)
+...+..++|+|++++|++++.+ +.|.+|++... . .+.....+......+++ +++++++++ .++.+.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 66777889999999999988876 79999998763 2 23334445556777888 788777776 68899999
Q ss_pred ECCCCceeEE------ecc--------CCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCc-------E------EEE
Q 005277 491 SMDRIQPLRI------MAG--------HLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGE-------C------VRI 542 (704)
Q Consensus 491 d~~~~~~~~~------~~~--------~~~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~-------~------~~~ 542 (704)
++.....+.. ..+ +...+.+++|+|+|+++++++ .++.|++|++.... . ...
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 9975432211 111 123357899999999776665 47899999887533 1 122
Q ss_pred eecCCCCEEEEEEecCCCEEEEEe-CCCeEEEEeCCCCee--eeee---cCCCceeeeeeeeeeehcccccccccccccc
Q 005277 543 FIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLASGRC--VTPL---MGHTSCVWTLAYRFLLLVTNAYLKISDKVST 616 (704)
Q Consensus 543 ~~~h~~~i~~l~~spdg~~l~sg~-~dg~I~iwdl~~~~~--~~~~---~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~ 616 (704)
...+...+.+++|+|+|+++++++ .++.|.+||+.+++. +..+ ..+......+.|
T Consensus 206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~------------------- 266 (361)
T 3scy_A 206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHL------------------- 266 (361)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEE-------------------
T ss_pred ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEE-------------------
Confidence 234456688999999999888777 689999999987754 2222 223344567777
Q ss_pred ceeeeeeeEEeecccCCCCCEEEEEeC--CCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcE
Q 005277 617 GFLFYSLTIIYFGCASCEGSLLASGSA--DCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLL 694 (704)
Q Consensus 617 ~~~~~~~~~~~~~~~s~~g~~lasgs~--Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~ 694 (704)
+|+|++|++++. ++.|.+|++...... ...+..+.. ...+.+++|+|+|++
T Consensus 267 ---------------spdg~~l~v~~~~~~~~i~v~~~~~~~g~-----------~~~~~~~~~-g~~~~~~~~spdg~~ 319 (361)
T 3scy_A 267 ---------------SPDGKYLYASNRLKADGVAIFKVDETNGT-----------LTKVGYQLT-GIHPRNFIITPNGKY 319 (361)
T ss_dssp ---------------CTTSSEEEEEECSSSCEEEEEEECTTTCC-----------EEEEEEEEC-SSCCCEEEECTTSCE
T ss_pred ---------------CCCCCEEEEECCCCCCEEEEEEEcCCCCc-----------EEEeeEecC-CCCCceEEECCCCCE
Confidence 999998866665 489999999632110 122333433 456789999999998
Q ss_pred EEEeecC
Q 005277 695 FAAGALS 701 (704)
Q Consensus 695 La~gs~d 701 (704)
|++++.+
T Consensus 320 l~~~~~~ 326 (361)
T 3scy_A 320 LLVACRD 326 (361)
T ss_dssp EEEEETT
T ss_pred EEEEECC
Confidence 8888743
No 162
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.82 E-value=1.4e-19 Score=211.27 Aligned_cols=293 Identities=12% Similarity=0.120 Sum_probs=200.1
Q ss_pred CeEeecCCCCCCeEEEEEeeCCC----CEEEEEEcCCCCEEEEEeC---------CCcEEEEEcccCCccccccccCCCC
Q 005277 330 NRVHLSSAALPSVSFYTFINTHN----GLNCASISQDGSLVAGGFS---------DSSLKVWDMAKLGQQAVSSGLQGEN 396 (704)
Q Consensus 330 ~~~~l~~~~~p~~~~~~~~~~~~----~V~~~~fs~dg~~lasg~~---------dg~I~iwdl~~~~~~~~~~~~~~~~ 396 (704)
..+++|+........ +..++. .+.+++|||||++||+++. ++.|++||+.+.....
T Consensus 36 ~~i~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~--------- 104 (719)
T 1z68_A 36 NNIVLYNIETGQSYT--ILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVR--------- 104 (719)
T ss_dssp SCEEEEESSSCCEEE--EECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC---------
T ss_pred CCEEEEEcCCCcEEE--EEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccc---------
Confidence 467777765554332 233322 4899999999999999876 7899999987632100
Q ss_pred CCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEe-ecCCcCe---------
Q 005277 397 DTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY-KGHNYPV--------- 466 (704)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~-~~h~~~V--------- 466 (704)
...+ ...+.+++|||||+.|+.++ ++.|++|++.++...... .++...|
T Consensus 105 -----------------~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~ 163 (719)
T 1z68_A 105 -----------------GNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVY 163 (719)
T ss_dssp -----------------SSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHH
T ss_pred -----------------ceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEccccccee
Confidence 0001 24588899999999999886 789999999887765432 2232222
Q ss_pred --------eEEEEcCCCCEEEEEeCCC----------------------------------eEEEEECCCCcee---EE-
Q 005277 467 --------WDVQFNPQGHYFASSSHDR----------------------------------TARIWSMDRIQPL---RI- 500 (704)
Q Consensus 467 --------~~v~~sp~~~~l~sgs~dg----------------------------------~i~lwd~~~~~~~---~~- 500 (704)
.+++|+|||++|++++.|. .|++||+.+++.. ..
T Consensus 164 ~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~ 243 (719)
T 1z68_A 164 EEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVP 243 (719)
T ss_dssp HHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECC
T ss_pred eeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEcc
Confidence 4899999999999988652 7899999887642 21
Q ss_pred ----eccCCCCeeEEEEcCCCCEEEEEECC----CcEEEEe----CCCCcEEEEe----ecCCCCEE-----EEEEecCC
Q 005277 501 ----MAGHLSDVDCVRWHINCNYIATGSSD----KTVRLWD----VSSGECVRIF----IGHRSMIL-----SLAMSPDG 559 (704)
Q Consensus 501 ----~~~~~~~V~~v~~~p~~~~l~tgs~d----g~I~iwd----~~~~~~~~~~----~~h~~~i~-----~l~~spdg 559 (704)
+.+|...+.+++|+||++++++.... ..|.+|| +.++++...+ .+|...+. .++|+|||
T Consensus 244 ~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg 323 (719)
T 1z68_A 244 VPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDA 323 (719)
T ss_dssp CCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTS
T ss_pred CCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCC
Confidence 23577789999999998877775433 2489999 8888766555 46777676 88999999
Q ss_pred CEEEE--EeCCC--eEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCC
Q 005277 560 RYMAS--GDEDG--TIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEG 635 (704)
Q Consensus 560 ~~l~s--g~~dg--~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g 635 (704)
+.|+. +..+| .|.+||+.+++ ...+..+...+..+.+ + ++
T Consensus 324 ~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~----------------------------------~-d~ 367 (719)
T 1z68_A 324 ISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFR----------------------------------V-TQ 367 (719)
T ss_dssp SCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEE----------------------------------E-CS
T ss_pred CeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEE----------------------------------E-eC
Confidence 96554 44555 57778887766 4455555556666666 6 67
Q ss_pred CEEEEEeCC-----CcEEEEeCCCCccccccccccCcccccccc-ccCCCCcCeEEEEEccCCcEEEEee
Q 005277 636 SLLASGSAD-----CTVKLWDVTTSTKVLKTEEKSGTNRLRSLK-TLPTKSTPVYSLQFSRRNLLFAAGA 699 (704)
Q Consensus 636 ~~lasgs~D-----g~V~iWd~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~V~~l~fs~~g~~La~gs 699 (704)
+.|+..+.+ +.+++|.+...... .....+. .+..+...+..+.|+|++..++..+
T Consensus 368 ~~i~~~~~~~~~~~~~~~l~~~~~~~g~---------~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~ 428 (719)
T 1z68_A 368 DSLFYSSNEFEEYPGRRNIYRISIGSYP---------PSKKCVTCHLRKERCQYYTASFSDYAKYYALVC 428 (719)
T ss_dssp SEEEEEESCGGGCTTCBEEEEEECSSSS---------CCEEESSTTTTTTTBCBEEEEECGGGSSEEEEE
T ss_pred CEEEEEEecCCCCCceEEEEEEeCCCCC---------CCceeccCccCCCCCceEEEEECCCCCEEEEEc
Confidence 766665554 88999988652110 0001121 1333556788999999998777543
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.80 E-value=4.3e-18 Score=181.88 Aligned_cols=242 Identities=11% Similarity=0.032 Sum_probs=170.7
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEEcc-cCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEc
Q 005277 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMA-KLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (704)
Q Consensus 352 ~~V~~~~fs~dg~~lasg~~dg~I~iwdl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 430 (704)
..+..++|+|||++|++++.+ .|.+|++. ..... .......+ +.+.+++|+
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~--------------------------~~~~~~~~-g~~~~~~~s 91 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIV--------------------------HEASHPIG-GHPRANDAD 91 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEE--------------------------EEEEEECC-SSGGGGCTT
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEE--------------------------EeeEeecC-CCCccEEEC
Confidence 467889999999999998887 99999986 31100 00001111 224558899
Q ss_pred CCCCE--EEEEe-------------CCCeEEEEeCCC-CceeEEee----cCCcCeeEEEEcCCCCEEEEEeC-CCeEEE
Q 005277 431 PLGDF--ILSSS-------------ADTTIRLWSTKL-NANLVCYK----GHNYPVWDVQFNPQGHYFASSSH-DRTARI 489 (704)
Q Consensus 431 p~~~~--l~s~s-------------~Dg~I~lwd~~~-~~~~~~~~----~h~~~V~~v~~sp~~~~l~sgs~-dg~i~l 489 (704)
|++++ +++++ .+|++.+|++.. ++....+. .+...+.+++|+|+|+++++++. ++.|++
T Consensus 92 pdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~ 171 (365)
T 1jof_A 92 TNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWT 171 (365)
T ss_dssp SCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred CCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEE
Confidence 99994 44553 689999999974 55443333 24567999999999998887764 689999
Q ss_pred EECC-CCcee--EEec--cCCCCeeEEEEcCCCCEEEEEEC-CCcEEEEeCC--CCcEEE---Eee-------cCCC---
Q 005277 490 WSMD-RIQPL--RIMA--GHLSDVDCVRWHINCNYIATGSS-DKTVRLWDVS--SGECVR---IFI-------GHRS--- 548 (704)
Q Consensus 490 wd~~-~~~~~--~~~~--~~~~~V~~v~~~p~~~~l~tgs~-dg~I~iwd~~--~~~~~~---~~~-------~h~~--- 548 (704)
|+++ +++.. ..+. .|...+..++|+|+|+++++++. ++.|.+|++. +++... .+. +|..
T Consensus 172 ~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~ 251 (365)
T 1jof_A 172 HRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETG 251 (365)
T ss_dssp EEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTS
T ss_pred EEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccc
Confidence 9998 66543 2333 24567899999999999988775 6899999765 565431 221 1222
Q ss_pred ---CEEEEE-EecCCCEEEEEeCC-C-----eEEEEeCC-CCeeee---eecCCCceeeeeeeeeeehcccccccccccc
Q 005277 549 ---MILSLA-MSPDGRYMASGDED-G-----TIMMWDLA-SGRCVT---PLMGHTSCVWTLAYRFLLLVTNAYLKISDKV 614 (704)
Q Consensus 549 ---~i~~l~-~spdg~~l~sg~~d-g-----~I~iwdl~-~~~~~~---~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~ 614 (704)
.+..++ |+|||++|++++.+ + .|.+|++. +++... ....+...+..++|
T Consensus 252 ~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~----------------- 314 (365)
T 1jof_A 252 KGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAV----------------- 314 (365)
T ss_dssp SBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCE-----------------
T ss_pred cccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCccccee-----------------
Confidence 588999 99999998876543 2 89999996 565433 23334444566666
Q ss_pred ccceeeeeeeEEeecccCC---CCCEEEEEeCC-CcEEEEeCCCC
Q 005277 615 STGFLFYSLTIIYFGCASC---EGSLLASGSAD-CTVKLWDVTTS 655 (704)
Q Consensus 615 ~~~~~~~~~~~~~~~~~s~---~g~~lasgs~D-g~V~iWd~~~~ 655 (704)
+| +|++|++++.+ +.|.+|++...
T Consensus 315 -----------------sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 315 -----------------SPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp -----------------EECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred -----------------cCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 88 89999988864 89999998764
No 164
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.80 E-value=8.3e-19 Score=199.58 Aligned_cols=226 Identities=11% Similarity=0.034 Sum_probs=168.5
Q ss_pred ccCeEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCceeEEeecCC-cCeeEEEEcCCCCEEEEEeC---CCeEEEEECCC-
Q 005277 421 SGPVYSASFSPLGDFILSSSA-DTTIRLWSTKLNANLVCYKGHN-YPVWDVQFNPQGHYFASSSH---DRTARIWSMDR- 494 (704)
Q Consensus 421 ~~~V~~l~~sp~~~~l~s~s~-Dg~I~lwd~~~~~~~~~~~~h~-~~V~~v~~sp~~~~l~sgs~---dg~i~lwd~~~- 494 (704)
..+|++++|+|||+.|++++. ||+++||++.++.. ..+..|. ..+..+.|+|+ +.+++++. +....+|.++.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 568999999999999998876 99999999975554 4444454 68999999999 77777765 45566665533
Q ss_pred -CceeEEeccCCCCeeEEEEcCCCCE-EEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCC----
Q 005277 495 -IQPLRIMAGHLSDVDCVRWHINCNY-IATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED---- 568 (704)
Q Consensus 495 -~~~~~~~~~~~~~V~~v~~~p~~~~-l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~d---- 568 (704)
......+... ..+...+|+|+++. +++.+.++.+.+||+.+++.......+. .+++|||||++|++++.+
T Consensus 99 ~~g~~~~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~ 174 (582)
T 3o4h_A 99 RPGEEQRLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGR 174 (582)
T ss_dssp STTCCEECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTE
T ss_pred CCCccccccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCC
Confidence 2222233322 34556788888853 3344455556699999998766554433 789999999999988777
Q ss_pred CeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCC--c
Q 005277 569 GTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADC--T 646 (704)
Q Consensus 569 g~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg--~ 646 (704)
+.|++||+.+++.. .+..|.+.+.++.| ||||+.|++++.+| .
T Consensus 175 ~~i~~~d~~~g~~~-~l~~~~~~~~~~~~----------------------------------SpDG~~l~~~~~~~~~~ 219 (582)
T 3o4h_A 175 VSLFTSNLSSGGLR-VFDSGEGSFSSASI----------------------------------SPGMKVTAGLETAREAR 219 (582)
T ss_dssp EEEEEEETTTCCCE-EECCSSCEEEEEEE----------------------------------CTTSCEEEEEECSSCEE
T ss_pred eEEEEEcCCCCCce-EeecCCCccccceE----------------------------------CCCCCEEEEccCCCeeE
Confidence 78999999888754 67788888999999 99999999888888 8
Q ss_pred EEEEeCCCCccccccccccCccccccccccCCCCcCeEEEE--------EccCCcEEEEeecCCC
Q 005277 647 VKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQ--------FSRRNLLFAAGALSKT 703 (704)
Q Consensus 647 V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~--------fs~~g~~La~gs~dgt 703 (704)
|++||+.++... .+..+...+..+. |+|||.++++++.+++
T Consensus 220 i~~~d~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~ 268 (582)
T 3o4h_A 220 LVTVDPRDGSVE----------------DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGR 268 (582)
T ss_dssp EEEECTTTCCEE----------------ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTE
T ss_pred EEEEcCCCCcEE----------------EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCc
Confidence 999999876542 2223333444444 9999998898888774
No 165
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.79 E-value=8.5e-18 Score=196.90 Aligned_cols=237 Identities=13% Similarity=0.151 Sum_probs=171.8
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCc-----cCeEEEE
Q 005277 354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS-----GPVYSAS 428 (704)
Q Consensus 354 V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-----~~V~~l~ 428 (704)
..+++|+|||.+++++ ||.|++|++.+... ...+.+|. ....+++
T Consensus 19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~ 68 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ--ENNILVFNAEYGNS----------------------------SVFLENSTFDEFGHSINDYS 68 (740)
T ss_dssp CCCEEECSSSEEEEEE--TTEEEEEETTTCCE----------------------------EEEECTTTTTTCCSCCCEEE
T ss_pred ccccEECCCCcEEEEc--CCcEEEEECCCCce----------------------------EEEEechhhhhhcccccceE
Confidence 5578999999999987 99999999876322 22233333 2334589
Q ss_pred EcCCCCEEEEEeCC---------CeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeE
Q 005277 429 FSPLGDFILSSSAD---------TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR 499 (704)
Q Consensus 429 ~sp~~~~l~s~s~D---------g~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~ 499 (704)
|||||++|+.++.+ +.+.+||+.+++.. .+..|...+...+|||||+.+|.+. ++.|++|++.++...+
T Consensus 69 ~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~ 146 (740)
T 4a5s_A 69 ISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYR 146 (740)
T ss_dssp ECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEE
T ss_pred ECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEE
Confidence 99999999988876 56679999988754 4666778899999999999999884 6899999998877554
Q ss_pred Eec-cCCCCe-----------------eEEEEcCCCCEEEEEECCC----------------------------------
Q 005277 500 IMA-GHLSDV-----------------DCVRWHINCNYIATGSSDK---------------------------------- 527 (704)
Q Consensus 500 ~~~-~~~~~V-----------------~~v~~~p~~~~l~tgs~dg---------------------------------- 527 (704)
... ++...+ ..+.|+|||++|+.++.|.
T Consensus 147 lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~ 226 (740)
T 4a5s_A 147 ITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNP 226 (740)
T ss_dssp CCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCC
T ss_pred EcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCC
Confidence 322 222222 3589999999999876332
Q ss_pred --cEEEEeCCC---C---cEEEEee-----cCCCCEEEEEEecCCCEEEEEeC----CCeEEEEeCCCCe----ee--ee
Q 005277 528 --TVRLWDVSS---G---ECVRIFI-----GHRSMILSLAMSPDGRYMASGDE----DGTIMMWDLASGR----CV--TP 584 (704)
Q Consensus 528 --~I~iwd~~~---~---~~~~~~~-----~h~~~i~~l~~spdg~~l~sg~~----dg~I~iwdl~~~~----~~--~~ 584 (704)
+|++||+.+ + +...... +|...+..++|+|||+.++.... +..|.+||+.+++ +. ..
T Consensus 227 ~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~ 306 (740)
T 4a5s_A 227 TVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQ 306 (740)
T ss_dssp EEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGC
T ss_pred eeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEE
Confidence 488899988 7 4443322 37778999999999997766532 3479999999887 22 22
Q ss_pred e--cCCCceee-----eeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEE-EEeC-CC--cEEEEeCC
Q 005277 585 L--MGHTSCVW-----TLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLA-SGSA-DC--TVKLWDVT 653 (704)
Q Consensus 585 ~--~~h~~~V~-----sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~la-sgs~-Dg--~V~iWd~~ 653 (704)
+ .+|...|. +..| +|||+.|+ ..+. +| .|++||+.
T Consensus 307 l~~~~~~~~v~~~~~~~p~f----------------------------------spDG~~l~~~~s~~~G~~~l~~~~~~ 352 (740)
T 4a5s_A 307 HIEMSTTGWVGRFRPSEPHF----------------------------------TLDGNSFYKIISNEEGYRHICYFQID 352 (740)
T ss_dssp EEEECSSSCSSSSSCCCCEE----------------------------------CTTSSEEEEEEECTTSCEEEEEEETT
T ss_pred eeeccCCceEccCcCCCceE----------------------------------cCCCCEEEEEEEcCCCceEEEEEECC
Confidence 2 44555444 5566 99999876 6653 34 57888887
Q ss_pred CCc
Q 005277 654 TST 656 (704)
Q Consensus 654 ~~~ 656 (704)
++.
T Consensus 353 ~~~ 355 (740)
T 4a5s_A 353 KKD 355 (740)
T ss_dssp CSS
T ss_pred CCc
Confidence 654
No 166
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.79 E-value=2.8e-18 Score=184.23 Aligned_cols=276 Identities=9% Similarity=-0.031 Sum_probs=179.8
Q ss_pred EEEEEEcCCCCEEEEEeCC-C--cEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEc
Q 005277 354 LNCASISQDGSLVAGGFSD-S--SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (704)
Q Consensus 354 V~~~~fs~dg~~lasg~~d-g--~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 430 (704)
+.+++|||||++||.+... | .|.+|++.+.. ......++......+.|+
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~----------------------------~~~l~~~~~~~~~~~~~s 89 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQ----------------------------AVQLTEGKGDNTFGGFIS 89 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTE----------------------------EEECCCSSCBCTTTCEEC
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCc----------------------------EEEeecCCCCccccceEC
Confidence 6778999999998887653 3 57777765421 111111222223347899
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeE-------------------EEEcCCCCEEEEE-----eCCCe
Q 005277 431 PLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWD-------------------VQFNPQGHYFASS-----SHDRT 486 (704)
Q Consensus 431 p~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~-------------------v~~sp~~~~l~sg-----s~dg~ 486 (704)
|++++|+.++.++.|++|++.+++.......+...... +.|+|+++.++.+ ..+..
T Consensus 90 pdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~ 169 (396)
T 3c5m_A 90 TDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCR 169 (396)
T ss_dssp TTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEE
T ss_pred CCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcce
Confidence 99999999999999999999988776666544442222 3567777766554 35678
Q ss_pred EEEEECCCCceeEEeccCCCCeeEEEEcC-CCCEEEEEECC------CcEEEEeCCCCcEEEEeecC-CCCEEEEEEecC
Q 005277 487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHI-NCNYIATGSSD------KTVRLWDVSSGECVRIFIGH-RSMILSLAMSPD 558 (704)
Q Consensus 487 i~lwd~~~~~~~~~~~~~~~~V~~v~~~p-~~~~l~tgs~d------g~I~iwd~~~~~~~~~~~~h-~~~i~~l~~spd 558 (704)
|.+||+.+++..... .+...+..+.|+| ++..|+..+.+ ..|.+||+.+++........ ...+..++|+|+
T Consensus 170 l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spd 248 (396)
T 3c5m_A 170 LIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPD 248 (396)
T ss_dssp EEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTT
T ss_pred EEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCC
Confidence 999999988765554 4667889999999 78877776643 36889998766544333211 235888999999
Q ss_pred CCEEEEEeCC-----CeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCC
Q 005277 559 GRYMASGDED-----GTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASC 633 (704)
Q Consensus 559 g~~l~sg~~d-----g~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 633 (704)
|++|+.++.+ +.|++||+.+++........ . .. +.| ++
T Consensus 249 g~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~-~~-~~~----------------------------------s~ 291 (396)
T 3c5m_A 249 GSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP-P-CS-HLM----------------------------------SN 291 (396)
T ss_dssp SSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC-S-EE-EEE----------------------------------EC
T ss_pred CCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC-C-CC-CCc----------------------------------cC
Confidence 9988776543 45999999888654322211 1 11 556 88
Q ss_pred -CCCEEEEEe----------------CCCcEEEEeCCCCccccccccccCcccccccccc-CCCCcCeEEEEEccCCcEE
Q 005277 634 -EGSLLASGS----------------ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTL-PTKSTPVYSLQFSRRNLLF 695 (704)
Q Consensus 634 -~g~~lasgs----------------~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~V~~l~fs~~g~~L 695 (704)
+|+++++++ .++.|++||+.++....-...... +..+ ......+..+.|+|+|..|
T Consensus 292 ~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~s~dg~~l 365 (396)
T 3c5m_A 292 FDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTS------WDVLDGDRQITHPHPSFTPNDDGV 365 (396)
T ss_dssp SSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCC------CCCBTTBSSTTCCCCEECTTSSEE
T ss_pred CCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCc------cccccccccCCCCCceEccCCCeE
Confidence 999888765 347899999987643110000000 0000 0001125567899999988
Q ss_pred EEeecC
Q 005277 696 AAGALS 701 (704)
Q Consensus 696 a~gs~d 701 (704)
+.++..
T Consensus 366 ~~~s~~ 371 (396)
T 3c5m_A 366 LFTSDF 371 (396)
T ss_dssp EEEECT
T ss_pred EEEecC
Confidence 877654
No 167
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.79 E-value=1.8e-17 Score=191.48 Aligned_cols=282 Identities=12% Similarity=0.008 Sum_probs=187.9
Q ss_pred EeeCCCCEEEEEEcCCCCEEEEE--eCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCe
Q 005277 347 FINTHNGLNCASISQDGSLVAGG--FSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (704)
Q Consensus 347 ~~~~~~~V~~~~fs~dg~~lasg--~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 424 (704)
+..|...|.+++|++++-+++.+ ..++...||.....+. ...+..|...+
T Consensus 19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------------------~~~l~~~~~~~ 70 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGA----------------------------EESALPAPWNV 70 (662)
T ss_dssp HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSC----------------------------EEESSCTTCCB
T ss_pred HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCC----------------------------cceeCCCCccc
Confidence 34567789999999887777777 5588999998632111 12222233333
Q ss_pred E---------EEEEc--CCCCE-EEEEeC-CCeEEEEeCC--CCceeEEeec-----CCcCeeEEEEcCCCCEEEEEeCC
Q 005277 425 Y---------SASFS--PLGDF-ILSSSA-DTTIRLWSTK--LNANLVCYKG-----HNYPVWDVQFNPQGHYFASSSHD 484 (704)
Q Consensus 425 ~---------~l~~s--p~~~~-l~s~s~-Dg~I~lwd~~--~~~~~~~~~~-----h~~~V~~v~~sp~~~~l~sgs~d 484 (704)
. ...|+ ||++. |+.++. +..|.+|++. .......+.. |...+.+++|+|+|+.|++++.+
T Consensus 71 ~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~ 150 (662)
T 3azo_A 71 RNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEE 150 (662)
T ss_dssp CCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEE
T ss_pred cccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEec
Confidence 3 44454 99998 775543 5567777765 2034455555 66788999999999999998876
Q ss_pred ----------CeEEEEECCC------CceeEEec-cCCCCeeEEEEcCCCCEEEEEECC--------CcEEEEeCC-CC-
Q 005277 485 ----------RTARIWSMDR------IQPLRIMA-GHLSDVDCVRWHINCNYIATGSSD--------KTVRLWDVS-SG- 537 (704)
Q Consensus 485 ----------g~i~lwd~~~------~~~~~~~~-~~~~~V~~v~~~p~~~~l~tgs~d--------g~I~iwd~~-~~- 537 (704)
..|++||+.+ +.. ..+. .+...+..++|+|||++|+.++.+ ..|++||+. ++
T Consensus 151 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~ 229 (662)
T 3azo_A 151 FTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGR 229 (662)
T ss_dssp ECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSC
T ss_pred ccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCc
Confidence 5899999988 444 4455 556778889999999999988755 379999998 57
Q ss_pred --cEEEEeecCCCCEEEEEEecCCCEEEEEeCCC--eEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccc
Q 005277 538 --ECVRIFIGHRSMILSLAMSPDGRYMASGDEDG--TIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDK 613 (704)
Q Consensus 538 --~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg--~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~ 613 (704)
+......+|...+..++|+|||+++++++.+| .|.+||+.+++.......+ ..+....|.+..
T Consensus 230 ~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~-~~~~~p~w~~~~------------ 296 (662)
T 3azo_A 230 FADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRRE-EEFAGPLWTPGM------------ 296 (662)
T ss_dssp EEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCS-SBSSCCCCSTTC------------
T ss_pred ccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccccc-ccccCccccccC------------
Confidence 55555555678899999999999888888888 6777777677654443333 222222220000
Q ss_pred cccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeC--CCCccccccccccCccccccccccCCCCcCeEEE-EEcc
Q 005277 614 VSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDV--TTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSL-QFSR 690 (704)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l-~fs~ 690 (704)
....+++++.++++++. +.++||.+ .++. +..+..+...+..+ +++.
T Consensus 297 -------------~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~----------------~~~l~~~~~~~~~~~s~~~ 346 (662)
T 3azo_A 297 -------------RWFAPLANGLIAVVHGK-GAAVLGILDPESGE----------------LVDAAGPWTEWAATLTVSG 346 (662)
T ss_dssp -------------CSEEECTTSCEEEEEBS-SSCEEEEEETTTTE----------------EEECCSSCCEEEEEEEEET
T ss_pred -------------ceEeEeCCCEEEEEEEc-CccEEEEEECCCCc----------------EEEecCCCCeEEEEEecCC
Confidence 00011789999999999 99999954 3332 22344445566666 5555
Q ss_pred CCcEEEEeec
Q 005277 691 RNLLFAAGAL 700 (704)
Q Consensus 691 ~g~~La~gs~ 700 (704)
+..++++++.
T Consensus 347 ~~~~~~~~~~ 356 (662)
T 3azo_A 347 TRAVGVAASP 356 (662)
T ss_dssp TEEEEEEEET
T ss_pred CEEEEEEcCC
Confidence 5555555543
No 168
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.78 E-value=3.1e-17 Score=175.16 Aligned_cols=234 Identities=10% Similarity=0.040 Sum_probs=163.4
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCceeEEeec-CCcCeeEEEEcCCCCE--EEEEe-------------C
Q 005277 421 SGPVYSASFSPLGDFILSSSADTTIRLWSTK-LNANLVCYKG-HNYPVWDVQFNPQGHY--FASSS-------------H 483 (704)
Q Consensus 421 ~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~-~~~~~~~~~~-h~~~V~~v~~sp~~~~--l~sgs-------------~ 483 (704)
...+..++|+|++++|++++.+ +|.+|++. +++....... ..+.+.+++|+|+|++ +++++ .
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~ 117 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecC
Confidence 3467889999999999999888 99999997 6765433221 1123567999999994 45553 6
Q ss_pred CCeEEEEECC-CCceeEEec----cCCCCeeEEEEcCCCCEEEEEEC-CCcEEEEeCC-CCcEE--EEee--cCCCCEEE
Q 005277 484 DRTARIWSMD-RIQPLRIMA----GHLSDVDCVRWHINCNYIATGSS-DKTVRLWDVS-SGECV--RIFI--GHRSMILS 552 (704)
Q Consensus 484 dg~i~lwd~~-~~~~~~~~~----~~~~~V~~v~~~p~~~~l~tgs~-dg~I~iwd~~-~~~~~--~~~~--~h~~~i~~ 552 (704)
+|++.+|+++ .++....+. .+...+.+++|+|+|+++++++. ++.|++||+. +++.. ..+. .|...+..
T Consensus 118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~ 197 (365)
T 1jof_A 118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRW 197 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEE
T ss_pred CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCE
Confidence 8999999997 455443333 24567999999999999888764 6799999998 77653 2233 24567999
Q ss_pred EEEecCCCEEEEEeC-CCeEEEEeCC--CCeee------eeec----CCCc------eeeeee-eeeeehcccccccccc
Q 005277 553 LAMSPDGRYMASGDE-DGTIMMWDLA--SGRCV------TPLM----GHTS------CVWTLA-YRFLLLVTNAYLKISD 612 (704)
Q Consensus 553 l~~spdg~~l~sg~~-dg~I~iwdl~--~~~~~------~~~~----~h~~------~V~sl~-~~~~~~~~~~~~~~~~ 612 (704)
++|+|+|++|++++. ++.|.+|++. +++.. ..+. +|.. .+..+. |
T Consensus 198 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~--------------- 262 (365)
T 1jof_A 198 VAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCAL--------------- 262 (365)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEE---------------
T ss_pred eEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEE---------------
Confidence 999999999988775 7899999765 45532 1121 1121 456666 6
Q ss_pred ccccceeeeeeeEEeecccCCCCCEEEEEeCC-C-----cEEEEeCCCCccccccccccCcccccccc-ccCCCCcCeEE
Q 005277 613 KVSTGFLFYSLTIIYFGCASCEGSLLASGSAD-C-----TVKLWDVTTSTKVLKTEEKSGTNRLRSLK-TLPTKSTPVYS 685 (704)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~D-g-----~V~iWd~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~V~~ 685 (704)
+|+|++|++++.+ + +|.+|++...... ..+. ....+...+..
T Consensus 263 -------------------spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~------------~~~~~~~~~~~~~~~~ 311 (365)
T 1jof_A 263 -------------------TFSGKYMFASSRANKFELQGYIAGFKLRDCGSI------------EKQLFLSPTPTSGGHS 311 (365)
T ss_dssp -------------------CTTSSEEEEEEEESSTTSCCEEEEEEECTTSCE------------EEEEEEEECSSCCTTC
T ss_pred -------------------CCCCCEEEEECCCCCCCCCCeEEEEEECCCCCE------------EEeeeeeecCCCCccc
Confidence 9999988776643 2 8999999632111 1111 12233445667
Q ss_pred EEEcc---CCcEEEEeecC
Q 005277 686 LQFSR---RNLLFAAGALS 701 (704)
Q Consensus 686 l~fs~---~g~~La~gs~d 701 (704)
++|+| +|.+|++++.+
T Consensus 312 ~a~sp~~~dg~~l~v~~~~ 330 (365)
T 1jof_A 312 NAVSPCPWSDEWMAITDDQ 330 (365)
T ss_dssp CCEEECTTCTTEEEEECSS
T ss_pred ceecCCCcCCCEEEEEEcC
Confidence 89999 79999988765
No 169
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.78 E-value=9.7e-18 Score=176.60 Aligned_cols=255 Identities=9% Similarity=0.058 Sum_probs=170.1
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCC-cCeeEEEEcCCCCEEE-EEeCCCeEEEEECCCCceeEEecc
Q 005277 426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN-YPVWDVQFNPQGHYFA-SSSHDRTARIWSMDRIQPLRIMAG 503 (704)
Q Consensus 426 ~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~-~~V~~v~~sp~~~~l~-sgs~dg~i~lwd~~~~~~~~~~~~ 503 (704)
++++++++.++++++.+++|.+||+.+++.+..+..+. ..+..++|+|+|++++ ++..++.|.+||+.+++.+..+..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 45678888899999999999999999998888777543 2578999999998655 555789999999999888776653
Q ss_pred CC------CCeeEEEEcCCCCEEEEEECC------------CcEEEEeCCCCc---EEEEeecCCCCEEEEEEecCCCEE
Q 005277 504 HL------SDVDCVRWHINCNYIATGSSD------------KTVRLWDVSSGE---CVRIFIGHRSMILSLAMSPDGRYM 562 (704)
Q Consensus 504 ~~------~~V~~v~~~p~~~~l~tgs~d------------g~I~iwd~~~~~---~~~~~~~h~~~i~~l~~spdg~~l 562 (704)
+. ..+.+++|+|+|+++++++.+ +.|.+||+.+++ .+..+. +...+.+++|+|+|+ +
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l 161 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-L 161 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-E
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-E
Confidence 22 237899999999999998865 899999998854 334443 334688999999999 6
Q ss_pred EEEeCCCeEEEEeCCCCeeeeeecCCCc------------------------eeeeeeeeeee----hcc-cccccc-cc
Q 005277 563 ASGDEDGTIMMWDLASGRCVTPLMGHTS------------------------CVWTLAYRFLL----LVT-NAYLKI-SD 612 (704)
Q Consensus 563 ~sg~~dg~I~iwdl~~~~~~~~~~~h~~------------------------~V~sl~~~~~~----~~~-~~~~~~-~~ 612 (704)
++++. .|.+||+.+++.+..+..+.. ....+.+.... ... ...... ..
T Consensus 162 ~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 239 (349)
T 1jmx_B 162 YVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 239 (349)
T ss_dssp EEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred EEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence 66544 499999999988776653320 01111110000 000 000000 00
Q ss_pred ccccceee----eeeeEEeecccCC-CCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEE
Q 005277 613 KVSTGFLF----YSLTIIYFGCASC-EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQ 687 (704)
Q Consensus 613 ~~~~~~~~----~~~~~~~~~~~s~-~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~ 687 (704)
........ .....+...+++| ++++++++ ++.|.+||+.+++.. ..+.. ...+.+++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~---------------~~~~~-~~~~~~~~ 301 (349)
T 1jmx_B 240 LKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLI---------------KAANL-DHTYYCVA 301 (349)
T ss_dssp TTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEE---------------EEEEC-SSCCCEEE
T ss_pred ccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEE---------------EEEcC-CCCccceE
Confidence 00000000 0001233445689 99999888 889999999886532 12211 23467899
Q ss_pred EccCCcEEEEeecCC
Q 005277 688 FSRRNLLFAAGALSK 702 (704)
Q Consensus 688 fs~~g~~La~gs~dg 702 (704)
|+|+|..|++++.++
T Consensus 302 ~s~dg~~l~~~~~~~ 316 (349)
T 1jmx_B 302 FDKKGDKLYLGGTFN 316 (349)
T ss_dssp ECSSSSCEEEESBSS
T ss_pred ECCCCCEEEEecCCC
Confidence 999998888776554
No 170
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.76 E-value=2.3e-16 Score=165.85 Aligned_cols=239 Identities=14% Similarity=0.130 Sum_probs=182.3
Q ss_pred CCEEEEEEcCCCCEEEEEeCCC------------------------cEEEEEcccCCccccccccCCCCCCCCcccccCC
Q 005277 352 NGLNCASISQDGSLVAGGFSDS------------------------SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP 407 (704)
Q Consensus 352 ~~V~~~~fs~dg~~lasg~~dg------------------------~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (704)
+.+.+++++|+|++++++..++ .|.+||..+.
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g------------------------ 79 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA------------------------ 79 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC------------------------
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC------------------------
Confidence 5689999999999999988884 4555554321
Q ss_pred CCCccceeec-cCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-eeEEe---------ecCCcCeeEEEEcC-CC
Q 005277 408 NGRKRSYTLY-QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA-NLVCY---------KGHNYPVWDVQFNP-QG 475 (704)
Q Consensus 408 ~~~~~~~~~~-~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~-~~~~~---------~~h~~~V~~v~~sp-~~ 475 (704)
.....+ .++-....+++++|+++++++.+.++.|++|+..... .+..+ .++-....+|+++| ++
T Consensus 80 ----~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g 155 (329)
T 3fvz_A 80 ----EILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTG 155 (329)
T ss_dssp ----CEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTC
T ss_pred ----eEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCC
Confidence 111112 2344578899999999988888889999999987542 45544 23445688999999 78
Q ss_pred CEEEEEe-CCCeEEEEECCCCceeEEecc----------CCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCcEEEEe
Q 005277 476 HYFASSS-HDRTARIWSMDRIQPLRIMAG----------HLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIF 543 (704)
Q Consensus 476 ~~l~sgs-~dg~i~lwd~~~~~~~~~~~~----------~~~~V~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~~~~~~ 543 (704)
.++++.+ .++.|++|+. .+..+..+.. +......++++|+ +.++++...++.|++||..+|+.+..+
T Consensus 156 ~lyv~d~~~~~~I~~~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~ 234 (329)
T 3fvz_A 156 AVFVSDGYCNSRIVQFSP-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREI 234 (329)
T ss_dssp CEEEEECSSCCEEEEECT-TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred eEEEEeCCCCCeEEEEcC-CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEE
Confidence 8888886 6999999994 5566666642 2234889999998 777777778899999999989988887
Q ss_pred e--cCCCCEEEEEEecCCCEEEEE-------eCCCeEEEEeCCCCeeeeeec---CCCceeeeeeeeeeehccccccccc
Q 005277 544 I--GHRSMILSLAMSPDGRYMASG-------DEDGTIMMWDLASGRCVTPLM---GHTSCVWTLAYRFLLLVTNAYLKIS 611 (704)
Q Consensus 544 ~--~h~~~i~~l~~spdg~~l~sg-------~~dg~I~iwdl~~~~~~~~~~---~h~~~V~sl~~~~~~~~~~~~~~~~ 611 (704)
. .+...+.+++|+| |..+++. ..+..|++||+.+++.+..+. ++......+++
T Consensus 235 ~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~-------------- 299 (329)
T 3fvz_A 235 KHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVA-------------- 299 (329)
T ss_dssp CCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEE--------------
T ss_pred eccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEE--------------
Confidence 4 4566789999999 4443333 345589999999999888873 55666778887
Q ss_pred cccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCC
Q 005277 612 DKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTT 654 (704)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~ 654 (704)
+++|.++++...++.|++|++..
T Consensus 300 --------------------~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 300 --------------------SEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp --------------------CTTSEEEEEESSSCCEEEEEEEE
T ss_pred --------------------CCCCCEEEEECCCCEEEEEeCCc
Confidence 99998889999999999999864
No 171
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.76 E-value=6.7e-16 Score=158.48 Aligned_cols=242 Identities=10% Similarity=0.184 Sum_probs=179.1
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEE-c
Q 005277 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF-S 430 (704)
Q Consensus 352 ~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-s 430 (704)
..+.+++++++++++++...++.|.+|+..... ..... ......+|...+.++++ .
T Consensus 30 ~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~-~~~~~----------------------~~~~~~~~~~~p~~i~~~~ 86 (286)
T 1q7f_A 30 TEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRF-KFQFG----------------------ECGKRDSQLLYPNRVAVVR 86 (286)
T ss_dssp SCEEEEEECTTCCEEEEEGGGTEEEEECTTSCE-EEEEC----------------------CBSSSTTCBSSEEEEEEET
T ss_pred CCCceEEECCCCCEEEEECCCCEEEEECCCCcE-EEEec----------------------ccCCCcccccCceEEEEEc
Confidence 468999999999999998889999999975311 00000 00001235567889999 4
Q ss_pred CCCCEEEEEeC-CCeEEEEeCCCCceeEEeec-CCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec--cCCC
Q 005277 431 PLGDFILSSSA-DTTIRLWSTKLNANLVCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA--GHLS 506 (704)
Q Consensus 431 p~~~~l~s~s~-Dg~I~lwd~~~~~~~~~~~~-h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~--~~~~ 506 (704)
+++.++++... ++.|.+|+ .+++.+..+.. +...+.+++++|+|+++++...++.|.+||.+ ++.+..+. .+..
T Consensus 87 ~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~ 164 (286)
T 1q7f_A 87 NSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLE 164 (286)
T ss_dssp TTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCS
T ss_pred CCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccC
Confidence 67766666543 78999999 45666666643 34578999999999988887788999999975 45555553 3456
Q ss_pred CeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecC--CCCEEEEEEecCCCEEEEEeCCC-eEEEEeCCCCeeee
Q 005277 507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH--RSMILSLAMSPDGRYMASGDEDG-TIMMWDLASGRCVT 583 (704)
Q Consensus 507 ~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h--~~~i~~l~~spdg~~l~sg~~dg-~I~iwdl~~~~~~~ 583 (704)
.+.+++++|+++++++.+.++.|++||. +++.+..+..+ ...+..++++|+|+++++...++ .|.+||. +++.+.
T Consensus 165 ~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~ 242 (286)
T 1q7f_A 165 FPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLIS 242 (286)
T ss_dssp SEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEE
T ss_pred CcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEE
Confidence 7899999999998888778999999997 56666666543 36789999999999888888776 9999995 566666
Q ss_pred eecCCC--ceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCC
Q 005277 584 PLMGHT--SCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTS 655 (704)
Q Consensus 584 ~~~~h~--~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~ 655 (704)
.+..+. ..+.++++ +++|+++++ +.|++|++|++...
T Consensus 243 ~~~~~~~~~~~~~i~~----------------------------------~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 243 ALESKVKHAQCFDVAL----------------------------------MDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEESSCCSCEEEEEE----------------------------------ETTTEEEEE-ETTTEEEEEECSCC
T ss_pred EEcccCCCCcceeEEE----------------------------------CCCCcEEEE-CCCCeEEEEEcccc
Confidence 665443 23556777 889987777 57999999998654
No 172
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.75 E-value=3.6e-16 Score=165.01 Aligned_cols=249 Identities=10% Similarity=0.101 Sum_probs=173.4
Q ss_pred CEEEEEEcCCCCEEEEEe---------CCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC
Q 005277 353 GLNCASISQDGSLVAGGF---------SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (704)
Q Consensus 353 ~V~~~~fs~dg~~lasg~---------~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 423 (704)
.+...++ ||+.+|... .++.|.+|++.+.. . ..+ ..
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~----------------------------~-~~l----~~ 60 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNA----------------------------R-RFI----EN 60 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCC----------------------------E-EEE----ES
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCc----------------------------e-EEc----cc
Confidence 4566777 888887653 25678888876511 1 112 56
Q ss_pred eEEEEEcCCCCEEEEEeCC---C--eEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCC--------------
Q 005277 424 VYSASFSPLGDFILSSSAD---T--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD-------------- 484 (704)
Q Consensus 424 V~~l~~sp~~~~l~s~s~D---g--~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~d-------------- 484 (704)
+.+++|+|||++|+.++.+ + .|.+|++.+++.......+ . +..+.|+|+|+.|+.++.+
T Consensus 61 ~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~ 138 (347)
T 2gop_A 61 ATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVP 138 (347)
T ss_dssp CEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CC
T ss_pred CCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccc
Confidence 8899999999999877653 3 4788888877665544433 3 9999999999998888642
Q ss_pred -------------CeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCC-------cEEEEeCCCCcEEEEee
Q 005277 485 -------------RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDK-------TVRLWDVSSGECVRIFI 544 (704)
Q Consensus 485 -------------g~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg-------~I~iwd~~~~~~~~~~~ 544 (704)
..|.+||+.+++.+..+.. . .+..+.|+|+| ++++++.++ ...+|.+.+++... +.
T Consensus 139 ~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-l~ 214 (347)
T 2gop_A 139 AWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEK-MF 214 (347)
T ss_dssp CC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEE-EE
T ss_pred eeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceEE-ec
Confidence 5799999998876445544 3 78899999999 777776542 33444444555443 43
Q ss_pred cCCCCEEEEEEecCCCEEEEEeCC--------CeEEEEeCCCCeeeeeecCCCceeee-eeeeeeehccccccccccccc
Q 005277 545 GHRSMILSLAMSPDGRYMASGDED--------GTIMMWDLASGRCVTPLMGHTSCVWT-LAYRFLLLVTNAYLKISDKVS 615 (704)
Q Consensus 545 ~h~~~i~~l~~spdg~~l~sg~~d--------g~I~iwdl~~~~~~~~~~~h~~~V~s-l~~~~~~~~~~~~~~~~~~~~ 615 (704)
.+ ..+..+ +|||++|+.++.+ ..|.+|| +++.......|...+.. +.|
T Consensus 215 ~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~------------------ 271 (347)
T 2gop_A 215 EK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIK------------------ 271 (347)
T ss_dssp EE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEE------------------
T ss_pred cC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEE------------------
Confidence 44 555554 9999998887744 4788888 66655555667777876 778
Q ss_pred cceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEE
Q 005277 616 TGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLF 695 (704)
Q Consensus 616 ~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~L 695 (704)
+ ++ ++++++.++.++|| +.++.. ..+..+...|.+++|+| .++
T Consensus 272 ----------------s-dg-~~~~~~~~~~~~l~-~~~g~~----------------~~~~~~~~~v~~~~~s~--~~~ 314 (347)
T 2gop_A 272 ----------------D-GK-VYFTLFEEGSVNLY-IWDGEI----------------KPIAKGRHWIMGFDVDE--IVV 314 (347)
T ss_dssp ----------------T-TE-EEEEEEETTEEEEE-EESSSE----------------EEEECSSSEEEEEEESS--SEE
T ss_pred ----------------c-Cc-EEEEEecCCcEEEE-EcCCce----------------EEEecCCCeEEeeeeeC--cEE
Confidence 8 88 99999999999999 873321 11222356789999999 455
Q ss_pred EEeecCC
Q 005277 696 AAGALSK 702 (704)
Q Consensus 696 a~gs~dg 702 (704)
++++.++
T Consensus 315 ~~~~~~~ 321 (347)
T 2gop_A 315 YLKETAT 321 (347)
T ss_dssp EEEECSS
T ss_pred EEEcCCC
Confidence 5555544
No 173
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.74 E-value=5.7e-16 Score=162.63 Aligned_cols=273 Identities=11% Similarity=0.038 Sum_probs=188.7
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcC
Q 005277 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (704)
Q Consensus 352 ~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 431 (704)
..|.++.|++++..++....++.++.|.- .....+.++...+.+++|+|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 54 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITA-------------------------------EPWLEISKKGLQLEGLNFDR 54 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEEC-------------------------------EEEEEEESSCCCEEEEEECT
T ss_pred cccceeeecCCccceeEEeecccCccccc-------------------------------ceeEEEeccCccccCcEECC
Confidence 45778889999888877778888888831 12334445666779999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCC----CeEEEEECCCCceeEEec--cCC
Q 005277 432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD----RTARIWSMDRIQPLRIMA--GHL 505 (704)
Q Consensus 432 ~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~d----g~i~lwd~~~~~~~~~~~--~~~ 505 (704)
++++++++..++.|.+||..+++.......+...+.+++|+|+|+++++...+ +.|.+||.++......+. .+.
T Consensus 55 ~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 134 (333)
T 2dg1_A 55 QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTA 134 (333)
T ss_dssp TSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSC
T ss_pred CCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccC
Confidence 99987788889999999999877655444567789999999999988777666 689999998876554433 244
Q ss_pred CCeeEEEEcCCCCEEEEEEC------CCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEE-EeCCCeEEEEeCCC
Q 005277 506 SDVDCVRWHINCNYIATGSS------DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMAS-GDEDGTIMMWDLAS 578 (704)
Q Consensus 506 ~~V~~v~~~p~~~~l~tgs~------dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s-g~~dg~I~iwdl~~ 578 (704)
..+.+++++|+|+++++... .+.|..||..+++..... .+...+..++|+|+|+.|+. .+.++.|.+||+.+
T Consensus 135 ~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~ 213 (333)
T 2dg1_A 135 YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTETTANRLHRIALED 213 (333)
T ss_dssp CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred CcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecC
Confidence 57899999999987776653 356777776655544332 33345789999999986654 45678999999864
Q ss_pred -Ceeeeee--------cCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEE
Q 005277 579 -GRCVTPL--------MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKL 649 (704)
Q Consensus 579 -~~~~~~~--------~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~i 649 (704)
+..+..+ .++ ..+..+.+ +++|+++++...++.|.+
T Consensus 214 ~g~~~~~~~~~~~~~~~~~-~~~~~i~~----------------------------------d~~G~l~v~~~~~~~v~~ 258 (333)
T 2dg1_A 214 DGVTIQPFGATIPYYFTGH-EGPDSCCI----------------------------------DSDDNLYVAMYGQGRVLV 258 (333)
T ss_dssp TSSSEEEEEEEEEEECCSS-SEEEEEEE----------------------------------BTTCCEEEEEETTTEEEE
T ss_pred CCcCcccccceEEEecCCC-CCCCceEE----------------------------------CCCCCEEEEEcCCCEEEE
Confidence 3322211 111 23344444 889998888888899999
Q ss_pred EeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecC
Q 005277 650 WDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS 701 (704)
Q Consensus 650 Wd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~d 701 (704)
||.. +.....+... ....++...+.+++|+|++..|.+++.+
T Consensus 259 ~d~~-g~~~~~~~~~---------~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 259 FNKR-GYPIGQILIP---------GRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp ECTT-SCEEEEEECT---------TGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred ECCC-CCEEEEEEcC---------CCccccccCcceEEECCCCCEEEEEeCc
Confidence 9984 3321111000 0000112257899999998666655554
No 174
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.73 E-value=1.4e-15 Score=159.83 Aligned_cols=235 Identities=14% Similarity=0.176 Sum_probs=179.9
Q ss_pred ccCeEEEEEcCCCCEEEEEeCC------------------------CeEEEEeCCCCceeEEee-cCCcCeeEEEEcCCC
Q 005277 421 SGPVYSASFSPLGDFILSSSAD------------------------TTIRLWSTKLNANLVCYK-GHNYPVWDVQFNPQG 475 (704)
Q Consensus 421 ~~~V~~l~~sp~~~~l~s~s~D------------------------g~I~lwd~~~~~~~~~~~-~h~~~V~~v~~sp~~ 475 (704)
-+.+.+++++|+|+++++.+.+ ++|.+||..+++.+..+. ++-.....++++|+|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 3679999999999988888777 479999999888776654 344578899999999
Q ss_pred CEEEEEeCCCeEEEEECCCCc-eeEEe---------ccCCCCeeEEEEcC-CCCEEEEEE-CCCcEEEEeCCCCcEEEEe
Q 005277 476 HYFASSSHDRTARIWSMDRIQ-PLRIM---------AGHLSDVDCVRWHI-NCNYIATGS-SDKTVRLWDVSSGECVRIF 543 (704)
Q Consensus 476 ~~l~sgs~dg~i~lwd~~~~~-~~~~~---------~~~~~~V~~v~~~p-~~~~l~tgs-~dg~I~iwd~~~~~~~~~~ 543 (704)
+++++.+.++.|++||.+... .+..+ .++......++++| ++.++++.+ .++.|++|| .++..+..+
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~ 181 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW 181 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence 988888889999999986542 45555 24455788999999 788888886 699999999 677777776
Q ss_pred ecCC----------CCEEEEEEecC-CCEEEEEeCCCeEEEEeCCCCeeeeeec--CCCceeeeeeeeeeehcccccccc
Q 005277 544 IGHR----------SMILSLAMSPD-GRYMASGDEDGTIMMWDLASGRCVTPLM--GHTSCVWTLAYRFLLLVTNAYLKI 610 (704)
Q Consensus 544 ~~h~----------~~i~~l~~spd-g~~l~sg~~dg~I~iwdl~~~~~~~~~~--~h~~~V~sl~~~~~~~~~~~~~~~ 610 (704)
.... .....++++|+ |.++++...++.|++||..+++.+..+. .+...+..+.+
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~------------- 248 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISY------------- 248 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEE-------------
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeee-------------
Confidence 4322 34899999998 7777888889999999999898888774 45566777777
Q ss_pred ccccccceeeeeeeEEeecccCC------CCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeE
Q 005277 611 SDKVSTGFLFYSLTIIYFGCASC------EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVY 684 (704)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~s~------~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~ 684 (704)
+| +|+..++.+.++.|++|+..+++.+... .....+...+.
T Consensus 249 ---------------------~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~------------~~~~~~~~~p~ 295 (329)
T 3fvz_A 249 ---------------------IPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVF------------KPVRKHFDMPH 295 (329)
T ss_dssp ---------------------ETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEE------------CCSSSCCSSEE
T ss_pred ---------------------cCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEE------------cCCCCccCCee
Confidence 44 4444444455679999999887643221 11134556689
Q ss_pred EEEEccCCcEEEEeecCC
Q 005277 685 SLQFSRRNLLFAAGALSK 702 (704)
Q Consensus 685 ~l~fs~~g~~La~gs~dg 702 (704)
.|+|+|+|.++++...++
T Consensus 296 ~ia~~~dG~lyvad~~~~ 313 (329)
T 3fvz_A 296 DIVASEDGTVYIGDAHTN 313 (329)
T ss_dssp EEEECTTSEEEEEESSSC
T ss_pred EEEECCCCCEEEEECCCC
Confidence 999999998888776654
No 175
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.73 E-value=1e-16 Score=187.79 Aligned_cols=142 Identities=15% Similarity=0.255 Sum_probs=113.4
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcC-----eeEEEEcCCCCEEEEEeCC---------CeE
Q 005277 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYP-----VWDVQFNPQGHYFASSSHD---------RTA 487 (704)
Q Consensus 422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~-----V~~v~~sp~~~~l~sgs~d---------g~i 487 (704)
....++.|+|++++++++ ||+|++||+.++++...+.+|... ..++.|||||++++.++.+ +.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 346689999999988886 899999999999988888877643 2448899999999999876 566
Q ss_pred EEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEe-ecCCCCE----------------
Q 005277 488 RIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF-IGHRSMI---------------- 550 (704)
Q Consensus 488 ~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~-~~h~~~i---------------- 550 (704)
.+||+.+++... +..|...+...+|+|||+.||.+. ++.|++||+.++...+.. .++...+
T Consensus 95 ~~~d~~~~~~~~-l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~ 172 (740)
T 4a5s_A 95 DIYDLNKRQLIT-EERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA 172 (740)
T ss_dssp EEEETTTTEECC-SSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred EEEECCCCcEEE-cccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCC
Confidence 799999987543 566778899999999999999985 789999999988765532 2333223
Q ss_pred -EEEEEecCCCEEEEEeC
Q 005277 551 -LSLAMSPDGRYMASGDE 567 (704)
Q Consensus 551 -~~l~~spdg~~l~sg~~ 567 (704)
..+.|||||++|+.++.
T Consensus 173 ~~~~~wSpDg~~la~~~~ 190 (740)
T 4a5s_A 173 YSALWWSPNGTFLAYAQF 190 (740)
T ss_dssp SBCEEECTTSSEEEEEEE
T ss_pred CcceEECCCCCEEEEEEE
Confidence 34899999999998753
No 176
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.72 E-value=2.1e-15 Score=160.75 Aligned_cols=221 Identities=11% Similarity=0.045 Sum_probs=153.7
Q ss_pred ccCCccCeEEEEEcCCCCEEEEEe----------CCCeEEEEeCCCCceeEEeecC------CcCeeEEEEcCCCCEEEE
Q 005277 417 YQGHSGPVYSASFSPLGDFILSSS----------ADTTIRLWSTKLNANLVCYKGH------NYPVWDVQFNPQGHYFAS 480 (704)
Q Consensus 417 ~~~h~~~V~~l~~sp~~~~l~s~s----------~Dg~I~lwd~~~~~~~~~~~~h------~~~V~~v~~sp~~~~l~s 480 (704)
+..+..+ .++|+|+++++++++ .+++|.+||..+.+.+..+... ......++|+|+|+++++
T Consensus 47 i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v 124 (361)
T 2oiz_A 47 VPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVL 124 (361)
T ss_dssp EECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEE
T ss_pred ecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEE
Confidence 3445555 899999999999886 3678999999998888777632 345678999999999998
Q ss_pred EeC--CCeEEEEECCCCceeEE-eccCCCCeeEEEEcCCC-CEEEEEECCCcEEEEeCCC-CcEE---------------
Q 005277 481 SSH--DRTARIWSMDRIQPLRI-MAGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSS-GECV--------------- 540 (704)
Q Consensus 481 gs~--dg~i~lwd~~~~~~~~~-~~~~~~~V~~v~~~p~~-~~l~tgs~dg~I~iwd~~~-~~~~--------------- 540 (704)
+.. +++|.+||+.+.+.+.. +... . ...+.+.|++ ..+++.+.||.+.+|++.. ++..
T Consensus 125 ~n~~~~~~v~v~d~~~~~~~~~~i~~~-~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~ 202 (361)
T 2oiz_A 125 QNASPATSIGIVDVAKGDYVEDVTAAA-G-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP 202 (361)
T ss_dssp EEESSSEEEEEEETTTTEEEEEEGGGT-T-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC
T ss_pred ECCCCCCeEEEEECCCCcEEEEEecCC-C-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc
Confidence 874 68999999999887776 4321 1 1123334433 3444444455554444432 2211
Q ss_pred ----------------------------------EEeec------CC----CCEEEEEEecCCCEEEEEeC---------
Q 005277 541 ----------------------------------RIFIG------HR----SMILSLAMSPDGRYMASGDE--------- 567 (704)
Q Consensus 541 ----------------------------------~~~~~------h~----~~i~~l~~spdg~~l~sg~~--------- 567 (704)
..+.. +. .....++|+|+++.++++..
T Consensus 203 ~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~ 282 (361)
T 2oiz_A 203 IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHK 282 (361)
T ss_dssp BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTT
T ss_pred eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCccccc
Confidence 11000 00 00112688999888777643
Q ss_pred --CCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCC
Q 005277 568 --DGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADC 645 (704)
Q Consensus 568 --dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg 645 (704)
.+.|.+||+.+++.+.++..+. ++++.| +|+|++|++++. +
T Consensus 283 ~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~----------------------------------spdg~~l~v~n~-~ 325 (361)
T 2oiz_A 283 FPAAEIWVMDTKTKQRVARIPGRD--ALSMTI----------------------------------DQQRNLMLTLDG-G 325 (361)
T ss_dssp CCCSEEEEEETTTTEEEEEEECTT--CCEEEE----------------------------------ETTTTEEEEECS-S
T ss_pred CCCceEEEEECCCCcEEEEEecCC--eeEEEE----------------------------------CCCCCEEEEeCC-C
Confidence 3489999999999999998777 888888 999999998887 9
Q ss_pred cEEEEeCCCC--ccccccccccCccccccccccCCCCcCeEEEEEccCCc
Q 005277 646 TVKLWDVTTS--TKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL 693 (704)
Q Consensus 646 ~V~iWd~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~ 693 (704)
+|.+||..++ +. +.++.........+.|+|+|.
T Consensus 326 ~v~v~D~~t~~l~~---------------~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 326 NVNVYDISQPEPKL---------------LRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp CEEEEECSSSSCEE---------------EEEETTSCSSEEEEEECCCSC
T ss_pred eEEEEECCCCccee---------------eEEeccCCCCcEEEEecCCCC
Confidence 9999999887 43 344444556678899999985
No 177
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.70 E-value=9.5e-16 Score=176.94 Aligned_cols=174 Identities=10% Similarity=0.069 Sum_probs=133.8
Q ss_pred CccCeEEEEEcCCCCEEEEEeCC----------CeEEEEeCCCC-----ceeEEee-cCCcCeeEEEEcCCCCEEEEEeC
Q 005277 420 HSGPVYSASFSPLGDFILSSSAD----------TTIRLWSTKLN-----ANLVCYK-GHNYPVWDVQFNPQGHYFASSSH 483 (704)
Q Consensus 420 h~~~V~~l~~sp~~~~l~s~s~D----------g~I~lwd~~~~-----~~~~~~~-~h~~~V~~v~~sp~~~~l~sgs~ 483 (704)
|...+.+++|+|||+.|++++.+ .+|++||+.+. .....+. .+...+..++|+|||++|+.++.
T Consensus 128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~ 207 (662)
T 3azo_A 128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAW 207 (662)
T ss_dssp TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEE
T ss_pred CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEEC
Confidence 66788999999999999988877 58999999872 3344555 56677889999999999998875
Q ss_pred C--------CeEEEEECC-CC---ceeEEeccCCCCeeEEEEcCCCCEEEEEECCC--cEEEEeCCCCcEEEEeecCCCC
Q 005277 484 D--------RTARIWSMD-RI---QPLRIMAGHLSDVDCVRWHINCNYIATGSSDK--TVRLWDVSSGECVRIFIGHRSM 549 (704)
Q Consensus 484 d--------g~i~lwd~~-~~---~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg--~I~iwd~~~~~~~~~~~~h~~~ 549 (704)
+ ..|.+||++ ++ .......++...+..+.|+|+|+++++++.++ .|.+||+.+++.......+...
T Consensus 208 ~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 287 (662)
T 3azo_A 208 DHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEF 287 (662)
T ss_dssp CTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBS
T ss_pred CCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccc
Confidence 5 379999998 56 44455555678899999999999888888888 6777777677765544333222
Q ss_pred --------EEEEEEecCCCEEEEEeCCCeEEEE--eCCCCeeeeeecCCCceeeee
Q 005277 550 --------ILSLAMSPDGRYMASGDEDGTIMMW--DLASGRCVTPLMGHTSCVWTL 595 (704)
Q Consensus 550 --------i~~l~~spdg~~l~sg~~dg~I~iw--dl~~~~~~~~~~~h~~~V~sl 595 (704)
+.+++|+|+++++++++. +.++|| |+.+++ +..+..|...+..+
T Consensus 288 ~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~ 341 (662)
T 3azo_A 288 AGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAAT 341 (662)
T ss_dssp SCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEE
T ss_pred cCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEE
Confidence 567899999999999998 999999 655555 56677777666655
No 178
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.70 E-value=3.3e-15 Score=174.08 Aligned_cols=240 Identities=10% Similarity=0.047 Sum_probs=176.9
Q ss_pred CEEEEEEcCCCCEEEEEeCCC-----cEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEE
Q 005277 353 GLNCASISQDGSLVAGGFSDS-----SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA 427 (704)
Q Consensus 353 ~V~~~~fs~dg~~lasg~~dg-----~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 427 (704)
.+.+++|||||++||.+..++ .|++||+.+... ..... ....+.++
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~----------------------------~~~~~-~~~~~~~~ 176 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKE----------------------------LPDVL-ERVKFSCM 176 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEE----------------------------EEEEE-EEECSCCE
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCC----------------------------Ccccc-cCcccceE
Confidence 588999999999999887644 899999876221 11111 11236789
Q ss_pred EEcCCCCEEEEEeCCCe----------------EEEEeCCCCce--eEEeec--CCcCeeEEEEcCCCCEEEEEeC----
Q 005277 428 SFSPLGDFILSSSADTT----------------IRLWSTKLNAN--LVCYKG--HNYPVWDVQFNPQGHYFASSSH---- 483 (704)
Q Consensus 428 ~~sp~~~~l~s~s~Dg~----------------I~lwd~~~~~~--~~~~~~--h~~~V~~v~~sp~~~~l~sgs~---- 483 (704)
+|+|||+.|+.++.++. |++|++.++.. ...+.. |...+..+.|+|+|++++.++.
T Consensus 177 ~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~ 256 (710)
T 2xdw_A 177 AWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCD 256 (710)
T ss_dssp EECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSS
T ss_pred EEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCC
Confidence 99999999998888766 99999988763 233333 4556789999999999888764
Q ss_pred -CCeEEEEECCC------Cc-eeEEeccCCCCeeEEEEcCCCCEEEEEECC----CcEEEEeCCCCc--EEEEeecCCC-
Q 005277 484 -DRTARIWSMDR------IQ-PLRIMAGHLSDVDCVRWHINCNYIATGSSD----KTVRLWDVSSGE--CVRIFIGHRS- 548 (704)
Q Consensus 484 -dg~i~lwd~~~------~~-~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d----g~I~iwd~~~~~--~~~~~~~h~~- 548 (704)
+..|.+||+.+ +. ....+..+...+.. .|+|+|+.|+..+.. +.|.+||+.++. ....+..|..
T Consensus 257 ~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~ 335 (710)
T 2xdw_A 257 PVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEK 335 (710)
T ss_dssp SCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS
T ss_pred CccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCC
Confidence 67899999976 43 45566666666655 488999888877653 359999998774 2344445544
Q ss_pred -CEEEEEEecCCCEEEEEeCCCe--EEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeE
Q 005277 549 -MILSLAMSPDGRYMASGDEDGT--IMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTI 625 (704)
Q Consensus 549 -~i~~l~~spdg~~l~sg~~dg~--I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (704)
.+..++|++++.++++...++. |.+||+.+++.+..+..+.+.+..+.+
T Consensus 336 ~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~---------------------------- 387 (710)
T 2xdw_A 336 DVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSG---------------------------- 387 (710)
T ss_dssp CEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEEC----------------------------
T ss_pred CeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEec----------------------------
Confidence 6888999988888888888884 666787778877788777778888877
Q ss_pred EeecccCCCCCEEEEE-e---CCCcEEEEeCCCCc
Q 005277 626 IYFGCASCEGSLLASG-S---ADCTVKLWDVTTST 656 (704)
Q Consensus 626 ~~~~~~s~~g~~lasg-s---~Dg~V~iWd~~~~~ 656 (704)
++++..++.. + ..++|++||+.+++
T Consensus 388 ------s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 388 ------QKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp ------CTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred ------CCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 8888766533 2 35789999998766
No 179
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.69 E-value=1.5e-13 Score=141.05 Aligned_cols=271 Identities=10% Similarity=0.040 Sum_probs=193.0
Q ss_pred EeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEE
Q 005277 347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (704)
Q Consensus 347 ~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 426 (704)
+..+...+.+++++++|+++++...++.|.+|+... ... ......+...+.+
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~-~~~---------------------------~~~~~~~~~~~~~ 61 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLDG-KIT---------------------------EYPLPTPDAKVMC 61 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEE---------------------------EEECSSTTCCEEE
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCCC-CeE---------------------------EecCCcccCceee
Confidence 344557899999999999888776688999998652 100 0111123467899
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee--cCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEE-ecc
Q 005277 427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK--GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI-MAG 503 (704)
Q Consensus 427 l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~--~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~-~~~ 503 (704)
+++.+++.++++...++.|..|+.. +. ...+. .....+.++++.++|.++++...++.|..||. +++.... ...
T Consensus 62 i~~~~~g~l~v~~~~~~~i~~~~~~-g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~ 138 (299)
T 2z2n_A 62 LTISSDGEVWFTENAANKIGRITKK-GI-IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPN 138 (299)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTT-SC-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSS
T ss_pred EEECCCCCEEEeCCCCCeEEEECCC-Cc-EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCC
Confidence 9999999988877778899999986 33 23332 24557899999999988887777889999998 4443332 233
Q ss_pred CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEE-eecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeee
Q 005277 504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI-FIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582 (704)
Q Consensus 504 ~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~-~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~ 582 (704)
....+.++++.+++++.++...++.|..||. +++.... ...+...+.+++++++|++.++...++.|.+||. +++..
T Consensus 139 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~ 216 (299)
T 2z2n_A 139 KGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT 216 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE
T ss_pred CCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEE
Confidence 4567899999999988777767789999999 7765543 2334557889999999997777777889999998 66543
Q ss_pred ee-ecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccccc
Q 005277 583 TP-LMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKT 661 (704)
Q Consensus 583 ~~-~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~ 661 (704)
.. ...+...+.++.+ +++|+++++...++.|.+||.. +. ..
T Consensus 217 ~~~~~~~~~~~~~i~~----------------------------------~~~g~l~v~~~~~~~i~~~d~~-g~-~~-- 258 (299)
T 2z2n_A 217 EFKIPTPNARPHAITA----------------------------------GAGIDLWFTEWGANKIGRLTSN-NI-IE-- 258 (299)
T ss_dssp EEECSSTTCCEEEEEE----------------------------------CSTTCEEEEETTTTEEEEEETT-TE-EE--
T ss_pred EEECCCCCCCceeEEE----------------------------------CCCCCEEEeccCCceEEEECCC-Cc-eE--
Confidence 22 2234455667766 8889877777678899999983 32 11
Q ss_pred ccccCccccccccccCCCCcCeEEEEEccCCcEEEEeec
Q 005277 662 EEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL 700 (704)
Q Consensus 662 ~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~ 700 (704)
...++.....+.++.+ ++|.+.++...
T Consensus 259 -----------~~~~~~~~~~~~~i~~-~~g~l~v~~~~ 285 (299)
T 2z2n_A 259 -----------EYPIQIKSAEPHGICF-DGETIWFAMEC 285 (299)
T ss_dssp -----------EEECSSSSCCEEEEEE-CSSCEEEEETT
T ss_pred -----------EEeCCCCCCccceEEe-cCCCEEEEecC
Confidence 1112334467899999 98888777543
No 180
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.69 E-value=7e-15 Score=151.77 Aligned_cols=238 Identities=12% Similarity=0.050 Sum_probs=175.2
Q ss_pred EeeCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277 347 FINTHNGLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (704)
Q Consensus 347 ~~~~~~~V~~~~fs~dg~-~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (704)
+..+.....+++|+|+|+ +++++..++.|..|+..+. ...+..+...+.
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~------------------------------~~~~~~~~~~~~ 72 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ------------------------------LSPEMHPSHHQN 72 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC------------------------------EEEEESSCSSEE
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC------------------------------eEEEECCCCCcc
Confidence 344556688999999998 8888989999999997641 233344667799
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecC----CcCeeEEEEcCCCCEEEEEeC-----------------C
Q 005277 426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH----NYPVWDVQFNPQGHYFASSSH-----------------D 484 (704)
Q Consensus 426 ~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h----~~~V~~v~~sp~~~~l~sgs~-----------------d 484 (704)
+++++|+++++++...++.|.+||..+++........ ...+.+++++|+|+++++.+. .
T Consensus 73 ~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~ 152 (296)
T 3e5z_A 73 GHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPG 152 (296)
T ss_dssp EEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSS
T ss_pred eeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCC
Confidence 9999999998877777789999999877754433221 234678999999998887321 2
Q ss_pred CeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC-CCcE---EEEeecCCCCEEEEEEecCCC
Q 005277 485 RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS-SGEC---VRIFIGHRSMILSLAMSPDGR 560 (704)
Q Consensus 485 g~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~-~~~~---~~~~~~h~~~i~~l~~spdg~ 560 (704)
+.|..++.+ + .+..+..+......++|+|+++.+++.+.++.|++||+. ++.. ...+..+...+.+++++++|+
T Consensus 153 ~~l~~~~~~-g-~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~ 230 (296)
T 3e5z_A 153 RWVFRLAPD-G-TLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL 230 (296)
T ss_dssp CEEEEECTT-S-CEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC
T ss_pred cEEEEECCC-C-CEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC
Confidence 455555554 3 344455566778999999999999777778999999997 5554 334434555678899999998
Q ss_pred EEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEE
Q 005277 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLAS 640 (704)
Q Consensus 561 ~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~las 640 (704)
++++. ++.|.+||.. ++.+..+..+.. +.++.|. +++++.|++
T Consensus 231 l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~---------------------------------~~d~~~L~v 273 (296)
T 3e5z_A 231 IWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFG---------------------------------GPEGRTLYM 273 (296)
T ss_dssp EEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEE---------------------------------STTSCEEEE
T ss_pred EEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEE---------------------------------CCCCCEEEE
Confidence 66665 7889999986 777777877776 7788772 578888888
Q ss_pred EeCCCcEEEEeCCC
Q 005277 641 GSADCTVKLWDVTT 654 (704)
Q Consensus 641 gs~Dg~V~iWd~~~ 654 (704)
++.++ +.-++..+
T Consensus 274 ~t~~~-l~~~~~~~ 286 (296)
T 3e5z_A 274 TVSTE-FWSIETNV 286 (296)
T ss_dssp EETTE-EEEEECSC
T ss_pred EcCCe-EEEEEccc
Confidence 88763 44444444
No 181
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.69 E-value=2.5e-15 Score=160.95 Aligned_cols=209 Identities=13% Similarity=0.050 Sum_probs=157.3
Q ss_pred ceeeccCCccCeEE-----EEEcCCCCEEEEEeC-CC--eEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCC
Q 005277 413 SYTLYQGHSGPVYS-----ASFSPLGDFILSSSA-DT--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD 484 (704)
Q Consensus 413 ~~~~~~~h~~~V~~-----l~~sp~~~~l~s~s~-Dg--~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~d 484 (704)
....+..|...+.. .+|+|||++|+.++. +| .|.+||+.+++......++...+..+.|+|+|+.|+.++.+
T Consensus 22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~ 101 (388)
T 3pe7_A 22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG 101 (388)
T ss_dssp EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT
T ss_pred ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC
Confidence 34455566655555 889999999998877 67 48888999888777677776666678999999999999999
Q ss_pred CeEEEEECCCCceeEEeccCCCCeeEEE--EcCCCCEEEEEE----------------------CCCcEEEEeCCCCcEE
Q 005277 485 RTARIWSMDRIQPLRIMAGHLSDVDCVR--WHINCNYIATGS----------------------SDKTVRLWDVSSGECV 540 (704)
Q Consensus 485 g~i~lwd~~~~~~~~~~~~~~~~V~~v~--~~p~~~~l~tgs----------------------~dg~I~iwd~~~~~~~ 540 (704)
+.+++||+.+++....+..+...+.... ++|++.+++... .+..|++||+.+++..
T Consensus 102 ~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~ 181 (388)
T 3pe7_A 102 RNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST 181 (388)
T ss_dssp TEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE
T ss_pred CeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE
Confidence 9999999999988777766665554444 489999887532 3467999999998765
Q ss_pred EEeecCCCCEEEEEEec-CCCEEEEEeCC------CeEEEEeCCCCeeeeeecCCC--ceeeeeeeeeeehccccccccc
Q 005277 541 RIFIGHRSMILSLAMSP-DGRYMASGDED------GTIMMWDLASGRCVTPLMGHT--SCVWTLAYRFLLLVTNAYLKIS 611 (704)
Q Consensus 541 ~~~~~h~~~i~~l~~sp-dg~~l~sg~~d------g~I~iwdl~~~~~~~~~~~h~--~~V~sl~~~~~~~~~~~~~~~~ 611 (704)
.. ..+...+..++|+| ||+.|+.+..+ ..|.++|+..+... .+..+. ..+....|
T Consensus 182 ~l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~-------------- 245 (388)
T 3pe7_A 182 VI-LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFW-------------- 245 (388)
T ss_dssp EE-EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEE--------------
T ss_pred Ee-ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceE--------------
Confidence 54 45667899999999 99998877653 37888887765443 343333 35677778
Q ss_pred cccccceeeeeeeEEeecccCCCCCEEEEEeC-CC----cEEEEeCCCCcc
Q 005277 612 DKVSTGFLFYSLTIIYFGCASCEGSLLASGSA-DC----TVKLWDVTTSTK 657 (704)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~-Dg----~V~iWd~~~~~~ 657 (704)
+|+|+.|+..+. ++ .|++||+.+++.
T Consensus 246 --------------------spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~ 276 (388)
T 3pe7_A 246 --------------------VPDGSALVYVSYLKGSPDRFIYSADPETLEN 276 (388)
T ss_dssp --------------------CTTSSCEEEEEEETTCCCEEEEEECTTTCCE
T ss_pred --------------------CCCCCEEEEEecCCCCCcceEEEEecCCCce
Confidence 999997765443 22 399999988763
No 182
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.69 E-value=4.8e-15 Score=156.29 Aligned_cols=223 Identities=12% Similarity=0.087 Sum_probs=158.0
Q ss_pred CCEEEEEEcCCCCEEEEEeCC---Cc--EEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEE
Q 005277 352 NGLNCASISQDGSLVAGGFSD---SS--LKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (704)
Q Consensus 352 ~~V~~~~fs~dg~~lasg~~d---g~--I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 426 (704)
..+.+++|||||+.||.++.+ +. |.+|++.+. .... +..+.. +.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g----------------------------~~~~-l~~~~~-~~~ 108 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETL----------------------------SSKK-ILEAKN-IRS 108 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTT----------------------------EEEE-EEEESE-EEE
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCC----------------------------ceEE-EEcCCC-ccc
Confidence 468899999999999988764 34 556665531 1111 122233 899
Q ss_pred EEEcCCCCEEEEEeCC---------------------------CeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEE
Q 005277 427 ASFSPLGDFILSSSAD---------------------------TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA 479 (704)
Q Consensus 427 l~~sp~~~~l~s~s~D---------------------------g~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~ 479 (704)
++|+|+++.|+.++.+ ..|.+||+.+++.+..+.. . .+..+.|+|+| +++
T Consensus 109 ~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~ 185 (347)
T 2gop_A 109 LEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVV 185 (347)
T ss_dssp EEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEE
T ss_pred eeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEE
Confidence 9999999988877632 5799999998876455544 3 78899999999 777
Q ss_pred EEeCCC-------eEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECC--------CcEEEEeCCCCcEEEEee
Q 005277 480 SSSHDR-------TARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD--------KTVRLWDVSSGECVRIFI 544 (704)
Q Consensus 480 sgs~dg-------~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d--------g~I~iwd~~~~~~~~~~~ 544 (704)
+++.++ ...||.+++++ ...+..+ ..+..+ +|+|++|+.++.+ ..|.+|| +++......
T Consensus 186 ~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~ 259 (347)
T 2gop_A 186 NVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILD 259 (347)
T ss_dssp EEECCCSSCCSSCCEEEEEEETTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESST
T ss_pred EEecccccccccccccEEEeCCCc-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccc
Confidence 776542 44555554444 3444434 444444 8999999887754 3688888 666655555
Q ss_pred cCCCCEEE-EEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeee
Q 005277 545 GHRSMILS-LAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSL 623 (704)
Q Consensus 545 ~h~~~i~~-l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (704)
++...+.. +.|+ +| ++++++.++.++|| +.+++.. .+..+...|.++.|
T Consensus 260 ~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~-~~~~~~~~v~~~~~-------------------------- 309 (347)
T 2gop_A 260 EVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIK-PIAKGRHWIMGFDV-------------------------- 309 (347)
T ss_dssp TCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEE-EEECSSSEEEEEEE--------------------------
T ss_pred cCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceE-EEecCCCeEEeeee--------------------------
Confidence 66778886 9999 88 88999999999999 8766553 34445778888888
Q ss_pred eEEeecccCCCCCEEEEEeCCCcE-EEEeCC
Q 005277 624 TIIYFGCASCEGSLLASGSADCTV-KLWDVT 653 (704)
Q Consensus 624 ~~~~~~~~s~~g~~lasgs~Dg~V-~iWd~~ 653 (704)
++ .++++++.++.. .||.+.
T Consensus 310 --------s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 310 --------DE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp --------SS--SEEEEEECSSSCCEEEEES
T ss_pred --------eC--cEEEEEcCCCChHHheEeC
Confidence 88 677888777765 777765
No 183
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.68 E-value=1.2e-14 Score=147.52 Aligned_cols=240 Identities=9% Similarity=0.020 Sum_probs=173.4
Q ss_pred CEEEEEEcCCCCEEE-EEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcC
Q 005277 353 GLNCASISQDGSLVA-GGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (704)
Q Consensus 353 ~V~~~~fs~dg~~la-sg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 431 (704)
...+++++++|++++ +...++.|.+|+...... ......+...+.++++++
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~----------------------------~~~~~~~~~~p~~i~~~~ 76 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT----------------------------TVLPFNGLYQPQGLAVDG 76 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC---------------------------------EECCCCSCCSCCCEEECT
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCccc----------------------------ceEeeCCcCCcceeEECC
Confidence 678899999999777 557789999998653110 001112334577899999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEee-cCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeE
Q 005277 432 LGDFILSSSADTTIRLWSTKLNANLVCYK-GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDC 510 (704)
Q Consensus 432 ~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~-~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~ 510 (704)
+++++++.. ++.|.+||...... ..+. .....+.+++++++|+.+++...++.|.+|+..+.............+.+
T Consensus 77 ~g~l~v~~~-~~~i~~~d~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~ 154 (270)
T 1rwi_B 77 AGTVYVTDF-NNRVVTLAAGSNNQ-TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDG 154 (270)
T ss_dssp TCCEEEEET-TTEEEEECTTCSCC-EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCC
T ss_pred CCCEEEEcC-CCEEEEEeCCCceE-eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCcee
Confidence 998666655 88999999876543 3332 23356889999999998877777899999987655443333334456789
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCc
Q 005277 511 VRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTS 590 (704)
Q Consensus 511 v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~ 590 (704)
++++|+++++++...++.|.+||...+........+...+.+++++++|..+++...++.|.+||............+..
T Consensus 155 i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~ 234 (270)
T 1rwi_B 155 VAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLN 234 (270)
T ss_dssp EEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCS
T ss_pred EEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCC
Confidence 99999999777776788999999887765543334446789999999998777777788999999876543332222334
Q ss_pred eeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCc
Q 005277 591 CVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTST 656 (704)
Q Consensus 591 ~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~ 656 (704)
.+.++.+ +++|+++++...++.|++++....+
T Consensus 235 ~p~~i~~----------------------------------~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 235 TPLAVAV----------------------------------DSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp CEEEEEE----------------------------------CTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred CceeEEE----------------------------------CCCCCEEEEECCCCEEEEEcCCCcc
Confidence 5667777 8999988999999999999987654
No 184
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.68 E-value=2.5e-14 Score=146.69 Aligned_cols=231 Identities=11% Similarity=0.178 Sum_probs=170.6
Q ss_pred CCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee------cCCcCeeEEEE-cCCCCEEEEEeC-CCeEEEE
Q 005277 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK------GHNYPVWDVQF-NPQGHYFASSSH-DRTARIW 490 (704)
Q Consensus 419 ~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~------~h~~~V~~v~~-sp~~~~l~sgs~-dg~i~lw 490 (704)
++-..+.+++++++++++++.+.++.|.+||.. ++.+..+. ++...+.++++ .+++.++++... ++.|.+|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 455678999999999988888889999999987 66665553 23456889999 467776666543 8999999
Q ss_pred ECCCCceeEEec-cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEee--cCCCCEEEEEEecCCCEEEEEeC
Q 005277 491 SMDRIQPLRIMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI--GHRSMILSLAMSPDGRYMASGDE 567 (704)
Q Consensus 491 d~~~~~~~~~~~-~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~--~h~~~i~~l~~spdg~~l~sg~~ 567 (704)
| .+++.+..+. .+...+.+++++|+++++++...++.|.+||. .++.+..+. .+...+.+++++|+|+++++...
T Consensus 106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~ 183 (286)
T 1q7f_A 106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR 183 (286)
T ss_dssp C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCCEEEEECC
Confidence 9 4566666554 34467899999999998888778899999996 466666654 34457899999999998888888
Q ss_pred CCeEEEEeCCCCeeeeeecCC--CceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCC
Q 005277 568 DGTIMMWDLASGRCVTPLMGH--TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADC 645 (704)
Q Consensus 568 dg~I~iwdl~~~~~~~~~~~h--~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg 645 (704)
++.|.+||. .++.+..+..+ ...+..+++ +++|+++++...++
T Consensus 184 ~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~----------------------------------d~~G~l~v~~~~~~ 228 (286)
T 1q7f_A 184 AHCVKVFNY-EGQYLRQIGGEGITNYPIGVGI----------------------------------NSNGEILIADNHNN 228 (286)
T ss_dssp GTEEEEEET-TCCEEEEESCTTTSCSEEEEEE----------------------------------CTTCCEEEEECSSS
T ss_pred CCEEEEEcC-CCCEEEEEccCCccCCCcEEEE----------------------------------CCCCCEEEEeCCCC
Confidence 999999997 45566666433 245666766 89999998888886
Q ss_pred -cEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277 646 -TVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 702 (704)
Q Consensus 646 -~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg 702 (704)
.|.+|+.. +..+.. +.. ......+.+++|+|+|.++++ +.++
T Consensus 229 ~~i~~~~~~-g~~~~~------------~~~-~~~~~~~~~i~~~~~g~l~vs-~~~~ 271 (286)
T 1q7f_A 229 FNLTIFTQD-GQLISA------------LES-KVKHAQCFDVALMDDGSVVLA-SKDY 271 (286)
T ss_dssp CEEEEECTT-SCEEEE------------EEE-SSCCSCEEEEEEETTTEEEEE-ETTT
T ss_pred EEEEEECCC-CCEEEE------------Ecc-cCCCCcceeEEECCCCcEEEE-CCCC
Confidence 99999954 322111 111 112234789999999998887 4443
No 185
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.66 E-value=2e-14 Score=148.26 Aligned_cols=231 Identities=16% Similarity=0.069 Sum_probs=169.3
Q ss_pred eeccCCccCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECC
Q 005277 415 TLYQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD 493 (704)
Q Consensus 415 ~~~~~h~~~V~~l~~sp~~~-~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~ 493 (704)
..+..+.....+++|+|+++ +++++..++.|..|+..++ ...+..+...+.+++++|+|+++++...++.|.+||..
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~ 98 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP 98 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence 34445566788999999998 7778888999999999977 66677777889999999999988777777899999998
Q ss_pred CCceeEEeccC----CCCeeEEEEcCCCCEEEEE----E-------------CCCcEEEEeCCCCcEEEEeecCCCCEEE
Q 005277 494 RIQPLRIMAGH----LSDVDCVRWHINCNYIATG----S-------------SDKTVRLWDVSSGECVRIFIGHRSMILS 552 (704)
Q Consensus 494 ~~~~~~~~~~~----~~~V~~v~~~p~~~~l~tg----s-------------~dg~I~iwd~~~~~~~~~~~~h~~~i~~ 552 (704)
+++........ ...+..++++|+|+++++. + ..+.|..++.. ++ +..+..+......
T Consensus 99 ~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~g 176 (296)
T 3e5z_A 99 GGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNG 176 (296)
T ss_dssp TCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEE
T ss_pred CCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCcc
Confidence 77654443221 2356789999999988873 2 13456666654 44 3445566677899
Q ss_pred EEEecCCCEEEEEeCCCeEEEEeCC-CCee---eeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEee
Q 005277 553 LAMSPDGRYMASGDEDGTIMMWDLA-SGRC---VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYF 628 (704)
Q Consensus 553 l~~spdg~~l~sg~~dg~I~iwdl~-~~~~---~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (704)
++|+|+|+.|++.+.++.|.+||+. +++. ...+..+...+..+.+
T Consensus 177 i~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~------------------------------- 225 (296)
T 3e5z_A 177 LAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRV------------------------------- 225 (296)
T ss_dssp EEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEE-------------------------------
T ss_pred EEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEE-------------------------------
Confidence 9999999999777888999999987 4543 2233233444556666
Q ss_pred cccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEE-ccCCcEEEEeecCC
Q 005277 629 GCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQF-SRRNLLFAAGALSK 702 (704)
Q Consensus 629 ~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~f-s~~g~~La~gs~dg 702 (704)
+++|+++++. ++.|.+|+.. +.. +..+..+.. +.+++| +|++..|.+++.++
T Consensus 226 ---d~~G~l~v~~--~~~v~~~~~~-g~~---------------~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~ 278 (296)
T 3e5z_A 226 ---DAGGLIWASA--GDGVHVLTPD-GDE---------------LGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE 278 (296)
T ss_dssp ---BTTSCEEEEE--TTEEEEECTT-SCE---------------EEEEECSSC-CCEEEEESTTSCEEEEEETTE
T ss_pred ---CCCCCEEEEc--CCeEEEECCC-CCE---------------EEEEECCCC-ceeEEEECCCCCEEEEEcCCe
Confidence 8999877766 7899999976 322 333444444 889999 58988888877654
No 186
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.65 E-value=2.4e-14 Score=166.69 Aligned_cols=229 Identities=11% Similarity=0.041 Sum_probs=164.3
Q ss_pred CCccCeEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCe-------
Q 005277 419 GHSGPVYSASFSPLGDFILSSSADT-----TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT------- 486 (704)
Q Consensus 419 ~h~~~V~~l~~sp~~~~l~s~s~Dg-----~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~------- 486 (704)
+|...+.+++|||||++|+.++.++ +|++||+.+++.+.....+ ..+.+++|+|||+.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence 4555788999999999998665433 8999999998876543322 23678999999999999988766
Q ss_pred ---------EEEEECCCCce--eEEecc--CCCCeeEEEEcCCCCEEEEEEC-----CCcEEEEeCCC------Cc-EEE
Q 005277 487 ---------ARIWSMDRIQP--LRIMAG--HLSDVDCVRWHINCNYIATGSS-----DKTVRLWDVSS------GE-CVR 541 (704)
Q Consensus 487 ---------i~lwd~~~~~~--~~~~~~--~~~~V~~v~~~p~~~~l~tgs~-----dg~I~iwd~~~------~~-~~~ 541 (704)
|++|++.++.. ...+.. |...+..+.|+|+|++|+.++. +..|++||+.+ +. ...
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 280 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence 99999988763 233333 4455789999999999988764 56899999986 53 355
Q ss_pred EeecCCCCEEEEEEecCCCEEEEEeCC----CeEEEEeCCCCee--eeeecCCCc--eeeeeeeeeeehccccccccccc
Q 005277 542 IFIGHRSMILSLAMSPDGRYMASGDED----GTIMMWDLASGRC--VTPLMGHTS--CVWTLAYRFLLLVTNAYLKISDK 613 (704)
Q Consensus 542 ~~~~h~~~i~~l~~spdg~~l~sg~~d----g~I~iwdl~~~~~--~~~~~~h~~--~V~sl~~~~~~~~~~~~~~~~~~ 613 (704)
.+..+...+.. .|+|+|+.|+..+.. +.|.+||+.++.. ...+..|.. .+..+.|
T Consensus 281 ~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~---------------- 343 (710)
T 2xdw_A 281 KLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVAC---------------- 343 (710)
T ss_dssp EEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEE----------------
T ss_pred EeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEE----------------
Confidence 56666666655 588999988776653 3699999987742 344444543 6777777
Q ss_pred cccceeeeeeeEEeecccCCCCCEEEEEeCCCc--EEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccC
Q 005277 614 VSTGFLFYSLTIIYFGCASCEGSLLASGSADCT--VKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRR 691 (704)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~--V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~ 691 (704)
++++.+++++..|+. |.+|++.++.. +..+..+...|..+.++|+
T Consensus 344 ------------------~~~~~lv~~~~~~g~~~l~~~~~~~g~~---------------~~~l~~~~~~v~~~~~s~d 390 (710)
T 2xdw_A 344 ------------------VRSNFLVLCYLHDVKNTLQLHDLATGAL---------------LKIFPLEVGSVVGYSGQKK 390 (710)
T ss_dssp ------------------ETTTEEEEEEEETTEEEEEEEETTTCCE---------------EEEECCCSSEEEEEECCTT
T ss_pred ------------------EcCCEEEEEEEECCEEEEEEEECCCCCE---------------EEecCCCCceEEEEecCCC
Confidence 767778888888885 55566655432 1223334567888999998
Q ss_pred CcEEEEe
Q 005277 692 NLLFAAG 698 (704)
Q Consensus 692 g~~La~g 698 (704)
+..++..
T Consensus 391 ~~~l~~~ 397 (710)
T 2xdw_A 391 DTEIFYQ 397 (710)
T ss_dssp CSEEEEE
T ss_pred CCEEEEE
Confidence 8766544
No 187
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.65 E-value=2.3e-13 Score=142.68 Aligned_cols=224 Identities=10% Similarity=0.086 Sum_probs=159.6
Q ss_pred EEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCcc
Q 005277 343 SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG 422 (704)
Q Consensus 343 ~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 422 (704)
....+..+...+.+++|+++|++++++..++.|.+|+..+.. .......+..
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~----------------------------~~~~~~~~~~ 87 (333)
T 2dg1_A 36 PWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE----------------------------IKRPFVSHKA 87 (333)
T ss_dssp EEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC----------------------------EEEEEECSSS
T ss_pred eeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCc----------------------------EEEEeeCCCC
Confidence 344556677788999999999988889899999999976421 1111223557
Q ss_pred CeEEEEEcCCCCEEEEEeCC----CeEEEEeCCCCceeEEee--cCCcCeeEEEEcCCCCEEEEEeC------CCeEEEE
Q 005277 423 PVYSASFSPLGDFILSSSAD----TTIRLWSTKLNANLVCYK--GHNYPVWDVQFNPQGHYFASSSH------DRTARIW 490 (704)
Q Consensus 423 ~V~~l~~sp~~~~l~s~s~D----g~I~lwd~~~~~~~~~~~--~h~~~V~~v~~sp~~~~l~sgs~------dg~i~lw 490 (704)
.+.+++|+|++++++++..+ +.|.+||..++.....+. .+...+.++.++|+|+++++... .+.|..|
T Consensus 88 ~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~ 167 (333)
T 2dg1_A 88 NPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYV 167 (333)
T ss_dssp SEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEE
T ss_pred CcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEE
Confidence 89999999999988777766 689999998776543332 24457899999999987776653 3556666
Q ss_pred ECCCCceeEEeccCCCCeeEEEEcCCCCEEEEE-ECCCcEEEEeCCC-CcEEEE--------eecCCCCEEEEEEecCCC
Q 005277 491 SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG-SSDKTVRLWDVSS-GECVRI--------FIGHRSMILSLAMSPDGR 560 (704)
Q Consensus 491 d~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tg-s~dg~I~iwd~~~-~~~~~~--------~~~h~~~i~~l~~spdg~ 560 (704)
+.++++.... ..+...+.+++|+|++++|+++ +.++.|.+||+.+ +..+.. +.++ ..+..++++++|+
T Consensus 168 ~~~~~~~~~~-~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~ 245 (333)
T 2dg1_A 168 SPDFRTVTPI-IQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDN 245 (333)
T ss_dssp CTTSCCEEEE-EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCC
T ss_pred eCCCCEEEEe-ecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCC
Confidence 6655444333 2334567899999999866554 4578999999964 332221 1122 4678899999999
Q ss_pred EEEEEeCCCeEEEEeCCCCeeeeeecCCCc------eeeeeee
Q 005277 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTS------CVWTLAY 597 (704)
Q Consensus 561 ~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~------~V~sl~~ 597 (704)
++++...++.|.+||. .++.+..+..+.. .+.++.|
T Consensus 246 l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~ 287 (333)
T 2dg1_A 246 LYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQF 287 (333)
T ss_dssp EEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEE
T ss_pred EEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEE
Confidence 8888878899999998 5666666654432 5777777
No 188
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.64 E-value=1.1e-14 Score=169.34 Aligned_cols=241 Identities=14% Similarity=0.031 Sum_probs=167.9
Q ss_pred CCCEEEEEEcCCCCEEEE-----EeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277 351 HNGLNCASISQDGSLVAG-----GFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (704)
Q Consensus 351 ~~~V~~~~fs~dg~~las-----g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (704)
...+.+++|||||++||. |+.+..|++||+.+..... ...+.+. ...
T Consensus 120 ~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--------------------------~~~~~~~--~~~ 171 (695)
T 2bkl_A 120 TVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--------------------------VDVIEGG--KYA 171 (695)
T ss_dssp CEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--------------------------SCCBSCC--TTC
T ss_pred CEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--------------------------CcccCcc--ccc
Confidence 346899999999999994 4445789999998632110 0001111 125
Q ss_pred EEEEcCCCCEEEEEeCCCe-------------EEEEeCCCCce--eEEe--ecCCcCeeEEEEcCCCCEEEEEeCCC---
Q 005277 426 SASFSPLGDFILSSSADTT-------------IRLWSTKLNAN--LVCY--KGHNYPVWDVQFNPQGHYFASSSHDR--- 485 (704)
Q Consensus 426 ~l~~sp~~~~l~s~s~Dg~-------------I~lwd~~~~~~--~~~~--~~h~~~V~~v~~sp~~~~l~sgs~dg--- 485 (704)
+++|+|||+.|+.++.|.. |++|++.++.. ...+ ..|...+.++.|+|+|++++.++.++
T Consensus 172 ~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~ 251 (695)
T 2bkl_A 172 TPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSE 251 (695)
T ss_dssp CCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTE
T ss_pred ceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCc
Confidence 7899999999999988776 99999998762 2333 34556788999999999998887666
Q ss_pred -eEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEEC----CCcEEEEeCCCCcE---EEEeecC-CCCEEEEEEe
Q 005277 486 -TARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS----DKTVRLWDVSSGEC---VRIFIGH-RSMILSLAMS 556 (704)
Q Consensus 486 -~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~----dg~I~iwd~~~~~~---~~~~~~h-~~~i~~l~~s 556 (704)
.|.+|+..++.. ..+..+...+....| +++. ++..+. ++.|.+||+.++.. ...+..+ ...+..++|+
T Consensus 252 ~~l~~~~~~~~~~-~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~ 328 (695)
T 2bkl_A 252 NDVYWKRPGEKDF-RLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV 328 (695)
T ss_dssp EEEEEECTTCSSC-EEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE
T ss_pred eEEEEEcCCCCce-EEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE
Confidence 677776655543 444445556666667 5666 544443 58899999987753 3333333 4568889998
Q ss_pred cCCCEEEEEeCCCeEEEEeCC-CCeeeeeecCC-CceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCC
Q 005277 557 PDGRYMASGDEDGTIMMWDLA-SGRCVTPLMGH-TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCE 634 (704)
Q Consensus 557 pdg~~l~sg~~dg~I~iwdl~-~~~~~~~~~~h-~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 634 (704)
++.++++...|+..+||.+. +++....+..+ .+.+..+.+ +++
T Consensus 329 -~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~----------------------------------s~d 373 (695)
T 2bkl_A 329 -GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMG----------------------------------LED 373 (695)
T ss_dssp -TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBS----------------------------------CTT
T ss_pred -CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeec----------------------------------CCC
Confidence 77888899999988888654 45555656554 566777777 888
Q ss_pred CCEEEEE----eCCCcEEEEeCCCCcc
Q 005277 635 GSLLASG----SADCTVKLWDVTTSTK 657 (704)
Q Consensus 635 g~~lasg----s~Dg~V~iWd~~~~~~ 657 (704)
+..++.. ...++|++||+.+++.
T Consensus 374 ~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 374 LDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp CSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred CCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 8776633 2457899999988653
No 189
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.62 E-value=4.1e-15 Score=159.42 Aligned_cols=224 Identities=11% Similarity=0.042 Sum_probs=156.7
Q ss_pred CeEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeE
Q 005277 423 PVYSASFSPLGDFILSSSAD---TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR 499 (704)
Q Consensus 423 ~V~~l~~sp~~~~l~s~s~D---g~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~ 499 (704)
.+.+++|+|||++|+.++.. ..|.+||+.+++......++......+.|+|+|++|+.++.++.|++||+.+++...
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~ 116 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV 116 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE
Confidence 36778999999998866443 468888998776544433333333348899999999999999999999999887766
Q ss_pred EeccCCCCeeE-------------------EEEcCCCCEEEEE-----ECCCcEEEEeCCCCcEEEEeecCCCCEEEEEE
Q 005277 500 IMAGHLSDVDC-------------------VRWHINCNYIATG-----SSDKTVRLWDVSSGECVRIFIGHRSMILSLAM 555 (704)
Q Consensus 500 ~~~~~~~~V~~-------------------v~~~p~~~~l~tg-----s~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~ 555 (704)
....+...... +.|+|+++.++.+ ..+..|++||+.+++..... .+...+..+.|
T Consensus 117 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~ 195 (396)
T 3c5m_A 117 IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIY 195 (396)
T ss_dssp EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEE
T ss_pred EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceE
Confidence 66544432222 3456777766554 35678999999988876554 56678999999
Q ss_pred ec-CCCEEEEEeCC------CeEEEEeCCCCeeeeeecCC-CceeeeeeeeeeehccccccccccccccceeeeeeeEEe
Q 005277 556 SP-DGRYMASGDED------GTIMMWDLASGRCVTPLMGH-TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIY 627 (704)
Q Consensus 556 sp-dg~~l~sg~~d------g~I~iwdl~~~~~~~~~~~h-~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (704)
+| +|+.|+..+.+ ..|.+||+.+++........ ...+..+.|
T Consensus 196 sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~------------------------------ 245 (396)
T 3c5m_A 196 RPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFW------------------------------ 245 (396)
T ss_dssp ETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEE------------------------------
T ss_pred CCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEE------------------------------
Confidence 99 88877766543 46889998766533333321 235777788
Q ss_pred ecccCCCCCEEEEEeCC-----CcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEcc-CCcEEEEee
Q 005277 628 FGCASCEGSLLASGSAD-----CTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSR-RNLLFAAGA 699 (704)
Q Consensus 628 ~~~~s~~g~~lasgs~D-----g~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~-~g~~La~gs 699 (704)
+|+|+.|+.++.+ +.|++||+.++... .+..++. .. +.|+| +|.++++++
T Consensus 246 ----spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~-------------~l~~~~~----~~-~~~s~~dg~~l~~~~ 301 (396)
T 3c5m_A 246 ----IPDGSAMAYVSYFKGQTDRVIYKANPETLENE-------------EVMVMPP----CS-HLMSNFDGSLMVGDG 301 (396)
T ss_dssp ----CTTSSCEEEEEEETTTCCEEEEEECTTTCCEE-------------EEEECCS----EE-EEEECSSSSEEEEEE
T ss_pred ----CCCCCEEEEEecCCCCccceEEEEECCCCCeE-------------EeeeCCC----CC-CCccCCCCceEEEec
Confidence 9999987777544 44999999876431 1222221 22 88999 999888765
No 190
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.61 E-value=1.9e-13 Score=139.68 Aligned_cols=192 Identities=13% Similarity=0.092 Sum_probs=153.6
Q ss_pred CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCc-cCeEEEEEcCCCCEEEEEe
Q 005277 362 DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS-GPVYSASFSPLGDFILSSS 440 (704)
Q Consensus 362 dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~sp~~~~l~s~s 440 (704)
.+++|++++.++.|.+||..+. +....+..+. ..+.++.++|+|++++ +
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG----------------------------~~~w~~~~~~~~~~~~~~~~pdG~ilv--s 53 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTK----------------------------EIVWEYPLEKGWECNSVAATKAGEILF--S 53 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTT----------------------------EEEEEEECCTTCCCCEEEECTTSCEEE--E
T ss_pred CCcEEEeeCCCCEEEEEECCCC----------------------------eEEEEeCCCccCCCcCeEECCCCCEEE--e
Confidence 4678999999999999997552 2233333343 4678999999999888 4
Q ss_pred CCCeEEEEeCCCCceeEEeecC-CcCeeEEEEcCCCCEEEEEeC-CCeEEEEECCCCceeEEecc------CCCCeeEEE
Q 005277 441 ADTTIRLWSTKLNANLVCYKGH-NYPVWDVQFNPQGHYFASSSH-DRTARIWSMDRIQPLRIMAG------HLSDVDCVR 512 (704)
Q Consensus 441 ~Dg~I~lwd~~~~~~~~~~~~h-~~~V~~v~~sp~~~~l~sgs~-dg~i~lwd~~~~~~~~~~~~------~~~~V~~v~ 512 (704)
.++.|..||. +++.+..+..+ ...+.++.+.++|+++++.+. ++.+..+|. +++.+..+.. +......++
T Consensus 54 ~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~ 131 (276)
T 3no2_A 54 YSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQIN 131 (276)
T ss_dssp CBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCE
T ss_pred CCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCce
Confidence 5778999999 79999988865 357889999999999999887 788888886 5666655541 223455677
Q ss_pred EcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecC
Q 005277 513 WHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG 587 (704)
Q Consensus 513 ~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~ 587 (704)
+.++|+++++...++.|..||.. |+.+..+..+ ..+.++.+.++|+.+++++.++.|..+|..+|+.+.++..
T Consensus 132 ~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~ 204 (276)
T 3no2_A 132 KNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNA 204 (276)
T ss_dssp ECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEG
T ss_pred ECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecC
Confidence 88999999999999999999987 9999988765 4556788899999999999889999999999999887753
No 191
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.61 E-value=1.3e-13 Score=146.89 Aligned_cols=235 Identities=15% Similarity=0.147 Sum_probs=155.0
Q ss_pred CeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEEcccCCccccccccCCCCCCC
Q 005277 330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFS----------DSSLKVWDMAKLGQQAVSSGLQGENDTT 399 (704)
Q Consensus 330 ~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~----------dg~I~iwdl~~~~~~~~~~~~~~~~~~~ 399 (704)
..+++++....... .++..+.. - .++|+|||++|+++.. ++.|.+||..+......
T Consensus 31 ~~v~v~D~~t~~~~-~~i~~g~~-p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~----------- 96 (361)
T 2oiz_A 31 SRVHVYDYTNGKFL-GMVPTAFN-G-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKE----------- 96 (361)
T ss_dssp CEEEEEETTTCCEE-EEEECCEE-E-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEE-----------
T ss_pred CeEEEEECCCCeEE-EEecCCCC-C-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEE-----------
Confidence 35566654333222 22322322 3 8999999999998863 67899999865322111
Q ss_pred CcccccCCCCCccceeecc---CCccCeEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCceeEE-eecCCcCeeEEEEcC
Q 005277 400 PREDIIGPNGRKRSYTLYQ---GHSGPVYSASFSPLGDFILSSSA--DTTIRLWSTKLNANLVC-YKGHNYPVWDVQFNP 473 (704)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~---~h~~~V~~l~~sp~~~~l~s~s~--Dg~I~lwd~~~~~~~~~-~~~h~~~V~~v~~sp 473 (704)
+.... .+......++|+|+|++|+++.. +++|.+||+.+++.+.. +... ..+.+.+.|
T Consensus 97 --------------i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p 160 (361)
T 2oiz_A 97 --------------ISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQP 160 (361)
T ss_dssp --------------EEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECT
T ss_pred --------------EEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcC
Confidence 00000 12234567999999999998864 68999999999887776 4421 122344455
Q ss_pred CC-CEEEEEeCCCeEEEEECCC-Ccee-------------------------------------------------EEec
Q 005277 474 QG-HYFASSSHDRTARIWSMDR-IQPL-------------------------------------------------RIMA 502 (704)
Q Consensus 474 ~~-~~l~sgs~dg~i~lwd~~~-~~~~-------------------------------------------------~~~~ 502 (704)
++ ..+++.+.||.+.+|+++. ++.. ..+.
T Consensus 161 ~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~ 240 (361)
T 2oiz_A 161 NRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWS 240 (361)
T ss_dssp TSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEE
T ss_pred CCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceeccccc
Confidence 43 4455555555555555432 1111 0000
Q ss_pred c------C----CCCeeEEEEcCCCCEEEEEEC-----------CCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCE
Q 005277 503 G------H----LSDVDCVRWHINCNYIATGSS-----------DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRY 561 (704)
Q Consensus 503 ~------~----~~~V~~v~~~p~~~~l~tgs~-----------dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~ 561 (704)
. + ......++|+|+++.++++.. .+.|.+||+.+++.+..+..+. +.+++|+|||++
T Consensus 241 ~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~ 318 (361)
T 2oiz_A 241 LLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNL 318 (361)
T ss_dssp SCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTE
T ss_pred ccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCE
Confidence 0 0 011112788999888877653 3479999999999999998776 899999999999
Q ss_pred EEEEeCCCeEEEEeCCCC--eeeeeecCCCceeeeeee
Q 005277 562 MASGDEDGTIMMWDLASG--RCVTPLMGHTSCVWTLAY 597 (704)
Q Consensus 562 l~sg~~dg~I~iwdl~~~--~~~~~~~~h~~~V~sl~~ 597 (704)
|++++. +.|.+||..++ +.+..+..+......+.+
T Consensus 319 l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~ 355 (361)
T 2oiz_A 319 MLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQF 355 (361)
T ss_dssp EEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEE
T ss_pred EEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEe
Confidence 998887 99999999999 999888767766677777
No 192
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.60 E-value=2.8e-14 Score=165.74 Aligned_cols=226 Identities=8% Similarity=-0.050 Sum_probs=155.3
Q ss_pred CCccCeEEEEEcCCCCEEE-----EEeCCCeEEEEeCCCCceeEEeecCCcCe--eEEEEcCCCCEEEEEeCCCe-----
Q 005277 419 GHSGPVYSASFSPLGDFIL-----SSSADTTIRLWSTKLNANLVCYKGHNYPV--WDVQFNPQGHYFASSSHDRT----- 486 (704)
Q Consensus 419 ~h~~~V~~l~~sp~~~~l~-----s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V--~~v~~sp~~~~l~sgs~dg~----- 486 (704)
+|...+.+++|||||++|+ +|+.+.+|++||+.+++.+. ..+...+ ..++|+|+|+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV 195 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence 5667899999999999988 33445789999999887651 1122222 68999999999999998776
Q ss_pred --------EEEEECCCCce--eEEec--cCCCCeeEEEEcCCCCEEEEEECCC----cEEEEeCCCCcEEEEeecCCCCE
Q 005277 487 --------ARIWSMDRIQP--LRIMA--GHLSDVDCVRWHINCNYIATGSSDK----TVRLWDVSSGECVRIFIGHRSMI 550 (704)
Q Consensus 487 --------i~lwd~~~~~~--~~~~~--~~~~~V~~v~~~p~~~~l~tgs~dg----~I~iwd~~~~~~~~~~~~h~~~i 550 (704)
|++|++.++.. ...+. .+...+.++.|+|+|++|+.++.++ .|++||..++.... +..+...+
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~-l~~~~~~~ 274 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRL-LVKGVGAK 274 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEE-EEECSSCC
T ss_pred ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEE-eecCCCce
Confidence 99999988762 23333 3456788999999999999887666 68888776665443 44555566
Q ss_pred EEEEEecCCCEEEEEe---CCCeEEEEeCCCCee---eeeecCC-Cceeeeeeeeeeehccccccccccccccceeeeee
Q 005277 551 LSLAMSPDGRYMASGD---EDGTIMMWDLASGRC---VTPLMGH-TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSL 623 (704)
Q Consensus 551 ~~l~~spdg~~l~sg~---~dg~I~iwdl~~~~~---~~~~~~h-~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (704)
....+ ++|.+++++. .++.|.+||+.++.. ...+..+ ...+..+.|
T Consensus 275 ~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~-------------------------- 327 (695)
T 2bkl_A 275 YEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSI-------------------------- 327 (695)
T ss_dssp EEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEE--------------------------
T ss_pred EEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEE--------------------------
Confidence 66666 6777444433 358999999987753 2233333 445666666
Q ss_pred eEEeecccCCCCCEEEEEeCCCcEEEEeCCC-CccccccccccCccccccccccCCC-CcCeEEEEEccCCcEEEEe
Q 005277 624 TIIYFGCASCEGSLLASGSADCTVKLWDVTT-STKVLKTEEKSGTNRLRSLKTLPTK-STPVYSLQFSRRNLLFAAG 698 (704)
Q Consensus 624 ~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~-~~~~~~~~~~~~~~~~~~l~~~~~~-~~~V~~l~fs~~g~~La~g 698 (704)
+ ++.+++++..|+..+||.+.. +.. +..+..+ ...|..++|+|++..++..
T Consensus 328 --------~-~~~lv~~~~~dg~~~l~~~~~~g~~---------------~~~l~~~~~~~v~~~~~s~d~~~l~~~ 380 (695)
T 2bkl_A 328 --------V-GGHLSLEYLKDATSEVRVATLKGKP---------------VRTVQLPGVGAASNLMGLEDLDDAYYV 380 (695)
T ss_dssp --------E-TTEEEEEEEETTEEEEEEEETTCCE---------------EEECCCSSSSEECCCBSCTTCSEEEEE
T ss_pred --------E-CCEEEEEEEECCEEEEEEEeCCCCe---------------eEEecCCCCeEEEEeecCCCCCEEEEE
Confidence 5 667889999999988887652 221 1122222 4456677778877665543
No 193
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.59 E-value=9.5e-12 Score=127.56 Aligned_cols=270 Identities=10% Similarity=0.022 Sum_probs=189.8
Q ss_pred eCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEE
Q 005277 349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS 428 (704)
Q Consensus 349 ~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 428 (704)
.....+.+++++++|++.++...++.|.+|+... ... . ..+..+...+.+++
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~-~~~--------------------------~-~~~~~~~~~~~~i~ 68 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQSG-RIK--------------------------E-FEVPTPDAKVMCLI 68 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEE--------------------------E-EECSSTTCCEEEEE
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCCC-ceE--------------------------E-EECCCCCCcceeEE
Confidence 3456789999999999888877789999998651 100 0 01112335688999
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceeE-EeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEE-eccCCC
Q 005277 429 FSPLGDFILSSSADTTIRLWSTKLNANLV-CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI-MAGHLS 506 (704)
Q Consensus 429 ~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~-~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~-~~~~~~ 506 (704)
+.+++.++++...++.|..||.. ++... ........+.++++.++|.++++...++.|..||.+ ++.... +.....
T Consensus 69 ~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~ 146 (300)
T 2qc5_A 69 VSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGS 146 (300)
T ss_dssp ECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTC
T ss_pred ECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCC
Confidence 99999977777778899999988 54432 222234678999999999988877778899999987 544432 233456
Q ss_pred CeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEe-ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeee-
Q 005277 507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF-IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP- 584 (704)
Q Consensus 507 ~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~-~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~- 584 (704)
.+.++++.+++++.++...++.|..||. +++..... ..+...+.+++++++|++.++....+.|.+||. +++....
T Consensus 147 ~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~ 224 (300)
T 2qc5_A 147 YPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYD 224 (300)
T ss_dssp CEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEE
T ss_pred CceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEE
Confidence 7899999999996666666788999998 66554422 234457899999999987777777788999998 5544332
Q ss_pred ecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccc
Q 005277 585 LMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEK 664 (704)
Q Consensus 585 ~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~ 664 (704)
+..+...+.++.+ +++|++.++...++.|..|+.. +...
T Consensus 225 ~~~~~~~~~~i~~----------------------------------d~~g~l~v~~~~~~~i~~~~~~-g~~~------ 263 (300)
T 2qc5_A 225 IPTPNARPHAITA----------------------------------GKNSEIWFTEWGANQIGRITND-NTIQ------ 263 (300)
T ss_dssp CSSTTCCEEEEEE----------------------------------CSTTCEEEEETTTTEEEEECTT-SCEE------
T ss_pred CCCCCCCceEEEE----------------------------------CCCCCEEEeccCCCeEEEECCC-CcEE------
Confidence 2333445666666 8889877777777999999983 3211
Q ss_pred cCccccccccccCCCCcCeEEEEEccCCcEEEEee
Q 005277 665 SGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 699 (704)
Q Consensus 665 ~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs 699 (704)
...++.....+.++.++++|.+.++..
T Consensus 264 --------~~~~~~~~~~~~~i~~~~~g~l~v~~~ 290 (300)
T 2qc5_A 264 --------EYQLQTENAEPHGITFGKDGSVWFALK 290 (300)
T ss_dssp --------EEECCSTTCCCCCEEECTTSCEEEECS
T ss_pred --------EEECCccCCccceeEeCCCCCEEEEcc
Confidence 011222345578899999998777654
No 194
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.58 E-value=3.3e-13 Score=136.72 Aligned_cols=230 Identities=9% Similarity=0.040 Sum_probs=161.5
Q ss_pred CeEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe
Q 005277 423 PVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM 501 (704)
Q Consensus 423 ~V~~l~~sp~~~~l~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~ 501 (704)
...++++++++++++ +.+.++.|.+|+..+.........+...+.+++++++|+++++.. ++.|.+||.+........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~ 103 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP 103 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence 678999999999666 447789999999875543322223345678999999998666655 889999998765443222
Q ss_pred ccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCee
Q 005277 502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC 581 (704)
Q Consensus 502 ~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~ 581 (704)
......+.+++++|+++++++...++.|.+|+..+.............+.+++++|+|+++++...++.|.+||......
T Consensus 104 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~ 183 (270)
T 1rwi_B 104 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ 183 (270)
T ss_dssp CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce
Confidence 23336789999999999777777788999998766554433223334678999999999777777788999999887654
Q ss_pred eeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccccc
Q 005277 582 VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKT 661 (704)
Q Consensus 582 ~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~ 661 (704)
......+...+..+.+ +++|.++++...++.|.+|+.......
T Consensus 184 ~~~~~~~~~~p~~i~~----------------------------------d~~g~l~v~~~~~~~v~~~~~~~~~~~--- 226 (270)
T 1rwi_B 184 VVLPFTDITAPWGIAV----------------------------------DEAGTVYVTEHNTNQVVKLLAGSTTST--- 226 (270)
T ss_dssp EECCCSSCCSEEEEEE----------------------------------CTTCCEEEEETTTSCEEEECTTCSCCE---
T ss_pred EeecccCCCCceEEEE----------------------------------CCCCCEEEEECCCCcEEEEcCCCCcce---
Confidence 4333333345566666 889988888888899999998654321
Q ss_pred ccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277 662 EEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 702 (704)
Q Consensus 662 ~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg 702 (704)
.....+...+.+++++++|.++++...++
T Consensus 227 ------------~~~~~~~~~p~~i~~~~~g~l~v~~~~~~ 255 (270)
T 1rwi_B 227 ------------VLPFTGLNTPLAVAVDSDRTVYVADRGND 255 (270)
T ss_dssp ------------ECCCCSCSCEEEEEECTTCCEEEEEGGGT
T ss_pred ------------eeccCCCCCceeEEECCCCCEEEEECCCC
Confidence 01112235689999999999888776654
No 195
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.56 E-value=2.1e-12 Score=133.69 Aligned_cols=246 Identities=9% Similarity=0.068 Sum_probs=171.7
Q ss_pred eeCCCCEEEEEEcCCCCEEEE-------EeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCC
Q 005277 348 INTHNGLNCASISQDGSLVAG-------GFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH 420 (704)
Q Consensus 348 ~~~~~~V~~~~fs~dg~~las-------g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 420 (704)
...-....+++|+++|.++++ +..++.|.+|+..+....... .....++
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~------------------------~~~~~~~ 69 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVIC------------------------KPEVNGY 69 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEE------------------------CCEETTE
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEE------------------------ecccCCC
Confidence 344456789999999998888 677899999986542111000 0001235
Q ss_pred ccCeEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeEE-eec----CCcCeeEEEEcCCCCEEEEEeCC----------
Q 005277 421 SGPVYSASFSPL-GDFILSSSADTTIRLWSTKLNANLVC-YKG----HNYPVWDVQFNPQGHYFASSSHD---------- 484 (704)
Q Consensus 421 ~~~V~~l~~sp~-~~~l~s~s~Dg~I~lwd~~~~~~~~~-~~~----h~~~V~~v~~sp~~~~l~sgs~d---------- 484 (704)
...+.+++++++ ++++++.. .+.|.+||.. ++.... ... ....+.+++++++|+++++...+
T Consensus 70 ~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~ 147 (314)
T 1pjx_A 70 GGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRS 147 (314)
T ss_dssp ECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBT
T ss_pred CCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCccccccccccc
Confidence 567899999999 66554444 4479999998 654332 221 12358899999999887776655
Q ss_pred -----CeEEEEECCCCceeEEeccCCCCeeEEEEc----CCCCEEEEE-ECCCcEEEEeCC-CCc-----EEEEeecCC-
Q 005277 485 -----RTARIWSMDRIQPLRIMAGHLSDVDCVRWH----INCNYIATG-SSDKTVRLWDVS-SGE-----CVRIFIGHR- 547 (704)
Q Consensus 485 -----g~i~lwd~~~~~~~~~~~~~~~~V~~v~~~----p~~~~l~tg-s~dg~I~iwd~~-~~~-----~~~~~~~h~- 547 (704)
+.|..|+.+ ++... +..+......++|+ |+++.++++ ..++.|.+||+. ++. ....+.++.
T Consensus 148 ~~~~~~~l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~ 225 (314)
T 1pjx_A 148 MQEKFGSIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE 225 (314)
T ss_dssp TSSSCEEEEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS
T ss_pred ccCCCCeEEEECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCC
Confidence 567777765 44333 33344557889999 999766655 467899999986 454 222333343
Q ss_pred CCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEe
Q 005277 548 SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIY 627 (704)
Q Consensus 548 ~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (704)
..+..++++++|+++++...++.|.+||..+++.+..+..+...+.++.+
T Consensus 226 ~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~------------------------------ 275 (314)
T 1pjx_A 226 GGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHF------------------------------ 275 (314)
T ss_dssp CEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEE------------------------------
T ss_pred CCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEE------------------------------
Confidence 56889999999998888878899999999878777777666677788887
Q ss_pred ecccCCCCCEE-EEEeCCCcEEEEeCCCC
Q 005277 628 FGCASCEGSLL-ASGSADCTVKLWDVTTS 655 (704)
Q Consensus 628 ~~~~s~~g~~l-asgs~Dg~V~iWd~~~~ 655 (704)
+++++.| ++...++.|..|++...
T Consensus 276 ----~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 276 ----KPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp ----CTTSSEEEEEETTTTEEEEEECSSC
T ss_pred ----CCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 8999955 55556789999998754
No 196
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.56 E-value=5e-13 Score=136.57 Aligned_cols=191 Identities=11% Similarity=0.083 Sum_probs=156.4
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEeecCC-cCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccC-CCCee
Q 005277 432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHN-YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH-LSDVD 509 (704)
Q Consensus 432 ~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~-~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~-~~~V~ 509 (704)
.++.|++++.|+.|.+||..+++.+..+..+. ..+.++.++|+|++++ +.++.|..||. +++.+..+..+ ...+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 36789999999999999999999999998776 5789999999999888 45788999999 78888888764 35788
Q ss_pred EEEEcCCCCEEEEEEC-CCcEEEEeCCCCcEEEEeec------CCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeee
Q 005277 510 CVRWHINCNYIATGSS-DKTVRLWDVSSGECVRIFIG------HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582 (704)
Q Consensus 510 ~v~~~p~~~~l~tgs~-dg~I~iwd~~~~~~~~~~~~------h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~ 582 (704)
++.+.|+|+++++.+. ++.|..+|. +|+.+..+.. +......+++.++|+++++...++.|.+||.. |+.+
T Consensus 81 ~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~ 158 (276)
T 3no2_A 81 TARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLL 158 (276)
T ss_dssp EEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred ccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEE
Confidence 8999999999999887 788888885 7887777642 11234566789999999999999999999987 9988
Q ss_pred eeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccc
Q 005277 583 TPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTE 662 (704)
Q Consensus 583 ~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~ 662 (704)
.++..+. ...++.. .++|+++++++.++.|..+|..+++.+.+..
T Consensus 159 w~~~~~~-~~~~~~~----------------------------------~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 159 NSVKLSG-TPFSSAF----------------------------------LDNGDCLVACGDAHCFVQLNLESNRIVRRVN 203 (276)
T ss_dssp EEEECSS-CCCEEEE----------------------------------CTTSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred EEEECCC-CccceeE----------------------------------cCCCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence 8876542 2334444 7889999999988999999999888766553
No 197
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.55 E-value=3.7e-13 Score=157.45 Aligned_cols=238 Identities=15% Similarity=0.058 Sum_probs=165.4
Q ss_pred CEEEEEEcCCCCEEEEEeCC-----CcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEE
Q 005277 353 GLNCASISQDGSLVAGGFSD-----SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA 427 (704)
Q Consensus 353 ~V~~~~fs~dg~~lasg~~d-----g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 427 (704)
.+.+++|||||++||.+..+ ..|++||+.+... ... ..+...+.++
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~----------------------------~~~-~~~~~~~~~~ 214 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKP----------------------------LAD-ELKWVKFSGL 214 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCE----------------------------EEE-EEEEEESCCC
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCC----------------------------CCc-cCCCceeccE
Confidence 68899999999999988764 3599999876321 110 1111223578
Q ss_pred EEcCCCCEEEEEeCCCe--------------EEEEeCCCCce--eEEeec--CCcCeeEEEEcCCCCEEEEEeCCC----
Q 005277 428 SFSPLGDFILSSSADTT--------------IRLWSTKLNAN--LVCYKG--HNYPVWDVQFNPQGHYFASSSHDR---- 485 (704)
Q Consensus 428 ~~sp~~~~l~s~s~Dg~--------------I~lwd~~~~~~--~~~~~~--h~~~V~~v~~sp~~~~l~sgs~dg---- 485 (704)
+|+|| +.|+.++.++. |++|++.++.. ...+.. +...+.++.|+|+|++++..+.++
T Consensus 215 ~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~ 293 (741)
T 1yr2_A 215 AWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPV 293 (741)
T ss_dssp EESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSC
T ss_pred EEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCc
Confidence 99999 98888776654 89999987753 233333 333588999999999988877544
Q ss_pred -eEEEEECCCC--ceeEEeccCCCCeeEEEEcCCCCEEEEEECC----CcEEEEeCCCC--cEEEEeecCCCCEEEEEEe
Q 005277 486 -TARIWSMDRI--QPLRIMAGHLSDVDCVRWHINCNYIATGSSD----KTVRLWDVSSG--ECVRIFIGHRSMILSLAMS 556 (704)
Q Consensus 486 -~i~lwd~~~~--~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d----g~I~iwd~~~~--~~~~~~~~h~~~i~~l~~s 556 (704)
.|.+||++++ .+...+..+...+.... .|+|+.|+..+.+ +.|.+||+.++ .....+..+...+..++|+
T Consensus 294 ~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~ 372 (741)
T 1yr2_A 294 NTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA 372 (741)
T ss_dssp CEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE
T ss_pred ceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE
Confidence 8999999876 41445555555555553 4889988887764 45999999874 3444454555567778887
Q ss_pred cCCCEEEEEeCCCeEEEEeCC-CCeeeeeecC-CCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCC
Q 005277 557 PDGRYMASGDEDGTIMMWDLA-SGRCVTPLMG-HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCE 634 (704)
Q Consensus 557 pdg~~l~sg~~dg~I~iwdl~-~~~~~~~~~~-h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 634 (704)
++.++++...||..+||.+. ++.....+.. +.+.+..+.+ +++
T Consensus 373 -~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~----------------------------------s~d 417 (741)
T 1yr2_A 373 -GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSG----------------------------------RPG 417 (741)
T ss_dssp -BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEEC----------------------------------CBT
T ss_pred -CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeec----------------------------------CCC
Confidence 66778888889987777554 4555555654 3567777777 888
Q ss_pred CCEEE-EE---eCCCcEEEEeCCCCc
Q 005277 635 GSLLA-SG---SADCTVKLWDVTTST 656 (704)
Q Consensus 635 g~~la-sg---s~Dg~V~iWd~~~~~ 656 (704)
+..|+ +. ...++|++||+.+++
T Consensus 418 ~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 418 DRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp CSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred CCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 77555 22 245789999998765
No 198
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.54 E-value=2.1e-11 Score=136.88 Aligned_cols=298 Identities=10% Similarity=0.044 Sum_probs=195.3
Q ss_pred CeEeecCCCCCCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCC
Q 005277 330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG 409 (704)
Q Consensus 330 ~~~~l~~~~~p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (704)
..+.+.+.....+. ........+.++.|||||+++.+++.|+.|.+||+....
T Consensus 177 ~~V~viD~~t~~v~--~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t------------------------- 229 (567)
T 1qks_A 177 GQIALIDGSTYEIK--TVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKE------------------------- 229 (567)
T ss_dssp TEEEEEETTTCCEE--EEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSS-------------------------
T ss_pred CeEEEEECCCCeEE--EEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCC-------------------------
Confidence 34555444333222 223445567899999999999999999999999985100
Q ss_pred CccceeeccCCccCeEEEEEc----CCCCEEEEEe-CCCeEEEEeCCCCceeEEeecC-----------CcCeeEEEEcC
Q 005277 410 RKRSYTLYQGHSGPVYSASFS----PLGDFILSSS-ADTTIRLWSTKLNANLVCYKGH-----------NYPVWDVQFNP 473 (704)
Q Consensus 410 ~~~~~~~~~~h~~~V~~l~~s----p~~~~l~s~s-~Dg~I~lwd~~~~~~~~~~~~h-----------~~~V~~v~~sp 473 (704)
......+.... ....++|+ |||+++++++ .+++|.++|..+.+.+..+... ...+..+..++
T Consensus 230 -~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~ 307 (567)
T 1qks_A 230 -PTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASH 307 (567)
T ss_dssp -CCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECS
T ss_pred -CcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcC
Confidence 11112222222 35789999 6999888665 4599999999999888776521 12577888998
Q ss_pred CCCEEE-EEeCCCeEEEEECCCCceeEEec-cCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCcEEEEeec-----
Q 005277 474 QGHYFA-SSSHDRTARIWSMDRIQPLRIMA-GHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIG----- 545 (704)
Q Consensus 474 ~~~~l~-sgs~dg~i~lwd~~~~~~~~~~~-~~~~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~----- 545 (704)
++..++ ....+|.|.++|......+.... .......++.|+|+++++++++ .++.|.++|+.+++.+..+..
T Consensus 308 ~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~P 387 (567)
T 1qks_A 308 YRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTP 387 (567)
T ss_dssp SSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSB
T ss_pred CCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCC
Confidence 766544 44567999999997754332211 2334567889999999988766 578999999999988776643
Q ss_pred CCCCEEEEEEecCCCEE-EEEe-CCCeEEEEeCCC-------CeeeeeecCCCceeeeeeeeeeehcccccccccccccc
Q 005277 546 HRSMILSLAMSPDGRYM-ASGD-EDGTIMMWDLAS-------GRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVST 616 (704)
Q Consensus 546 h~~~i~~l~~spdg~~l-~sg~-~dg~I~iwdl~~-------~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~ 616 (704)
|.+.-..+ ++|++..+ +++. .++.|.++|..+ .+.+.++......-..+..
T Consensus 388 hpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~------------------- 447 (567)
T 1qks_A 388 HPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKT------------------- 447 (567)
T ss_dssp CCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEEC-------------------
T ss_pred CCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEe-------------------
Confidence 33222222 68875544 4443 568999999987 5566666544322122233
Q ss_pred ceeeeeeeEEeecccCCCCCEEEEEeC-------CCcEEEEeCCCC-----ccccccccccCcccccccc---ccCCCCc
Q 005277 617 GFLFYSLTIIYFGCASCEGSLLASGSA-------DCTVKLWDVTTS-----TKVLKTEEKSGTNRLRSLK---TLPTKST 681 (704)
Q Consensus 617 ~~~~~~~~~~~~~~~s~~g~~lasgs~-------Dg~V~iWd~~~~-----~~~~~~~~~~~~~~~~~l~---~~~~~~~ 681 (704)
+|+++++.+... .++|.|+|+.+. ...... ..+. .++....
T Consensus 448 ---------------~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~---------~~~~~~~~~~~~~~ 503 (567)
T 1qks_A 448 ---------------HPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKT---------LPIAEWAGITEGQP 503 (567)
T ss_dssp ---------------CTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEE---------ECHHHHHTCCSSCC
T ss_pred ---------------CCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEE---------eccccccccCCCCc
Confidence 999999888663 469999999875 110000 0011 1223345
Q ss_pred CeEEEEEccCCcEEEEeec
Q 005277 682 PVYSLQFSRRNLLFAAGAL 700 (704)
Q Consensus 682 ~V~~l~fs~~g~~La~gs~ 700 (704)
.+..+.|+|+|..+.++..
T Consensus 504 ~~~~~~~~~~G~~~~~s~~ 522 (567)
T 1qks_A 504 RVVQGEFNKDGTEVWFSVW 522 (567)
T ss_dssp EEEEEEECTTSSEEEEEEE
T ss_pred ceEeeeECCCCCEEEEEee
Confidence 6889999999988777643
No 199
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.52 E-value=5.4e-12 Score=132.37 Aligned_cols=223 Identities=10% Similarity=-0.018 Sum_probs=161.9
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe
Q 005277 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM 501 (704)
Q Consensus 422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~ 501 (704)
....++.+. +++..++...++.|.+||..+++.+..+.. ......++++++++.+++...++.|.+||..+++....+
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i 121 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYI 121 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEE
Confidence 345677775 344555666689999999999999888863 456889999999855555548999999999998877666
Q ss_pred ccCC-----CCeeEEEEcCCCCEEEEEE--CCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCC------
Q 005277 502 AGHL-----SDVDCVRWHINCNYIATGS--SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED------ 568 (704)
Q Consensus 502 ~~~~-----~~V~~v~~~p~~~~l~tgs--~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~d------ 568 (704)
.... .....+++ ++..+++++ .++.|.+||..+++.+..+... .....++++|+|++++++..+
T Consensus 122 ~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~ 198 (328)
T 3dsm_A 122 ECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPY 198 (328)
T ss_dssp ECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSS
T ss_pred EcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCcc
Confidence 5332 14567777 344555554 4889999999999988877643 345789999999977776654
Q ss_pred ----CeEEEEeCCCCeeeeeecCC-CceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeC
Q 005277 569 ----GTIMMWDLASGRCVTPLMGH-TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSA 643 (704)
Q Consensus 569 ----g~I~iwdl~~~~~~~~~~~h-~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~ 643 (704)
+.|.+||..+++....+... ......+++ +|+++.|+++..
T Consensus 199 ~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~----------------------------------~~d~~~lyv~~~ 244 (328)
T 3dsm_A 199 GYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQL----------------------------------NGTRDTLYWINN 244 (328)
T ss_dssp CBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEE----------------------------------CTTSCEEEEESS
T ss_pred ccCCceEEEEECCCCeEEEEEecCCCCCceeEEE----------------------------------ecCCCEEEEEcc
Confidence 78999999999887766532 235677777 999998888765
Q ss_pred CCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEcc-CCcEEEEe
Q 005277 644 DCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSR-RNLLFAAG 698 (704)
Q Consensus 644 Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~-~g~~La~g 698 (704)
.|.+||..+++... ...+.........++++| ++.++++.
T Consensus 245 --~v~~~d~~t~~~~~-------------~~~~~~~~~~p~gi~vdp~~g~lyva~ 285 (328)
T 3dsm_A 245 --DIWRMPVEADRVPV-------------RPFLEFRDTKYYGLTVNPNNGEVYVAD 285 (328)
T ss_dssp --SEEEEETTCSSCCS-------------SCSBCCCSSCEEEEEECTTTCCEEEEE
T ss_pred --EEEEEECCCCceee-------------eeeecCCCCceEEEEEcCCCCeEEEEc
Confidence 89999998765310 011112245688999999 56666665
No 200
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.52 E-value=9.7e-13 Score=153.90 Aligned_cols=226 Identities=12% Similarity=0.026 Sum_probs=154.5
Q ss_pred CccCeEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCe--------
Q 005277 420 HSGPVYSASFSPLGDFILSSSAD-----TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT-------- 486 (704)
Q Consensus 420 h~~~V~~l~~sp~~~~l~s~s~D-----g~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~-------- 486 (704)
|...+.+++|||||++|+.++.+ .+|++||+.+++.+.. ..+...+..++|+|+ +.|+.++.++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence 44578899999999998866543 4699999999887543 212223468899999 99988876654
Q ss_pred ------EEEEECCCCce--eEEecc--CCCCeeEEEEcCCCCEEEEEECCC-----cEEEEeCCCC--cEEEEeecCCCC
Q 005277 487 ------ARIWSMDRIQP--LRIMAG--HLSDVDCVRWHINCNYIATGSSDK-----TVRLWDVSSG--ECVRIFIGHRSM 549 (704)
Q Consensus 487 ------i~lwd~~~~~~--~~~~~~--~~~~V~~v~~~p~~~~l~tgs~dg-----~I~iwd~~~~--~~~~~~~~h~~~ 549 (704)
|++|++.++.. ...+.. +...+..+.|+|+|++|+..+.++ .|++||+.++ .+...+..+...
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~ 318 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA 318 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence 88999977652 233333 233588999999999998877544 7999999877 414455555555
Q ss_pred EEEEEEecCCCEEEEEeC----CCeEEEEeCCCC--eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeee
Q 005277 550 ILSLAMSPDGRYMASGDE----DGTIMMWDLASG--RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSL 623 (704)
Q Consensus 550 i~~l~~spdg~~l~sg~~----dg~I~iwdl~~~--~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (704)
+... ++|+|+.|+..+. ++.|.+||+.++ .....+..+...+.++.|
T Consensus 319 ~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~-------------------------- 371 (741)
T 1yr2_A 319 QWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGI-------------------------- 371 (741)
T ss_dssp CEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEE--------------------------
T ss_pred eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEE--------------------------
Confidence 5555 3589998888775 356999999874 334444445555555655
Q ss_pred eEEeecccCCCCCEEEEEeCCCcEEEEeCCC-CccccccccccCccccccccccCC-CCcCeEEEEEccCCcEEEEe
Q 005277 624 TIIYFGCASCEGSLLASGSADCTVKLWDVTT-STKVLKTEEKSGTNRLRSLKTLPT-KSTPVYSLQFSRRNLLFAAG 698 (704)
Q Consensus 624 ~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~-~~~~~~~~~~~~~~~~~~l~~~~~-~~~~V~~l~fs~~g~~La~g 698 (704)
+ ++.++++...||..+||.+.. +.. +..+.. ....|..+.|+|++..|+..
T Consensus 372 --------~-~~~lv~~~~~dg~~~l~~~~~~g~~---------------~~~l~~~~~~~v~~~~~s~d~~~l~~~ 424 (741)
T 1yr2_A 372 --------A-GNRLFASYIHDAKSQVLAFDLDGKP---------------AGAVSLPGIGSASGLSGRPGDRHAYLS 424 (741)
T ss_dssp --------E-BTEEEEEEEETTEEEEEEEETTSCE---------------EEECBCSSSCEEEEEECCBTCSCEEEE
T ss_pred --------E-CCEEEEEEEECCEEEEEEEeCCCCc---------------eeeccCCCCeEEEEeecCCCCCEEEEE
Confidence 4 556788889999888886652 221 112221 24568889999988755543
No 201
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.52 E-value=4.2e-12 Score=133.20 Aligned_cols=235 Identities=7% Similarity=-0.070 Sum_probs=166.5
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCC
Q 005277 354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG 433 (704)
Q Consensus 354 V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~ 433 (704)
...+.+. ++++.++...++.|.+||..+.. ....+. .......+++++++
T Consensus 46 ~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~----------------------------~~~~i~-~~~~p~~i~~~~~g 95 (328)
T 3dsm_A 46 AQSMVIR-DGIGWIVVNNSHVIFAIDINTFK----------------------------EVGRIT-GFTSPRYIHFLSDE 95 (328)
T ss_dssp EEEEEEE-TTEEEEEEGGGTEEEEEETTTCC----------------------------EEEEEE-CCSSEEEEEEEETT
T ss_pred ceEEEEE-CCEEEEEEcCCCEEEEEECcccE----------------------------EEEEcC-CCCCCcEEEEeCCC
Confidence 4556663 45566666678999999987522 212222 23567899999888
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeEEeecCC-----cCeeEEEEcCCCCEEEEEe--CCCeEEEEECCCCceeEEeccCCC
Q 005277 434 DFILSSSADTTIRLWSTKLNANLVCYKGHN-----YPVWDVQFNPQGHYFASSS--HDRTARIWSMDRIQPLRIMAGHLS 506 (704)
Q Consensus 434 ~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~-----~~V~~v~~sp~~~~l~sgs--~dg~i~lwd~~~~~~~~~~~~~~~ 506 (704)
+..++...++.|.+||..+++....+.... .....+++ .++ .+++++ .++.|.+||+.+++.+..+... .
T Consensus 96 ~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~-~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~ 172 (328)
T 3dsm_A 96 KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGK-YVYVNCWSYQNRILKIDTETDKVVDELTIG-I 172 (328)
T ss_dssp EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETT-EEEEEECTTCCEEEEEETTTTEEEEEEECS-S
T ss_pred eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECC-EEEEEcCCCCCEEEEEECCCCeEEEEEEcC-C
Confidence 544444488999999999988777666433 14557777 344 444444 4899999999998887777643 3
Q ss_pred CeeEEEEcCCCCEEEEEECC----------CcEEEEeCCCCcEEEEeecC-CCCEEEEEEecCCCEEEEEeCCCeEEEEe
Q 005277 507 DVDCVRWHINCNYIATGSSD----------KTVRLWDVSSGECVRIFIGH-RSMILSLAMSPDGRYMASGDEDGTIMMWD 575 (704)
Q Consensus 507 ~V~~v~~~p~~~~l~tgs~d----------g~I~iwd~~~~~~~~~~~~h-~~~i~~l~~spdg~~l~sg~~dg~I~iwd 575 (704)
....+.++|+|++++++..+ +.|.+||..+++....+... ......++|+|+++.|+++.. .|.+||
T Consensus 173 ~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d 250 (328)
T 3dsm_A 173 QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMP 250 (328)
T ss_dssp CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEE
T ss_pred CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEE
Confidence 45788999999877766554 78999999999887766532 346899999999999988765 899999
Q ss_pred CCCCeeeee--ecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCC-CCCEEEEE----eCCCcEE
Q 005277 576 LASGRCVTP--LMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASC-EGSLLASG----SADCTVK 648 (704)
Q Consensus 576 l~~~~~~~~--~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~lasg----s~Dg~V~ 648 (704)
..+++.... +..+......+++ +| ++.++++. ..++.|.
T Consensus 251 ~~t~~~~~~~~~~~~~~~p~gi~v----------------------------------dp~~g~lyva~~~~y~~~~~V~ 296 (328)
T 3dsm_A 251 VEADRVPVRPFLEFRDTKYYGLTV----------------------------------NPNNGEVYVADAIDYQQQGIVY 296 (328)
T ss_dssp TTCSSCCSSCSBCCCSSCEEEEEE----------------------------------CTTTCCEEEEECTTSSSEEEEE
T ss_pred CCCCceeeeeeecCCCCceEEEEE----------------------------------cCCCCeEEEEcccccccCCEEE
Confidence 988875421 1212345566666 88 56666776 6789999
Q ss_pred EEeCCCCccc
Q 005277 649 LWDVTTSTKV 658 (704)
Q Consensus 649 iWd~~~~~~~ 658 (704)
+||.. ++.+
T Consensus 297 v~d~~-g~~~ 305 (328)
T 3dsm_A 297 RYSPQ-GKLI 305 (328)
T ss_dssp EECTT-CCEE
T ss_pred EECCC-CCEE
Confidence 99998 6544
No 202
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.51 E-value=2.3e-11 Score=136.67 Aligned_cols=266 Identities=11% Similarity=0.089 Sum_probs=182.5
Q ss_pred CCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEe
Q 005277 361 QDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSS 440 (704)
Q Consensus 361 ~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s 440 (704)
+.+.++++...++.|.+||..+.. ....+. ....+.++.|+||++++++++
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~----------------------------v~~~i~-~g~~p~~v~~SpDGr~lyv~~ 215 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYE----------------------------IKTVLD-TGYAVHISRLSASGRYLFVIG 215 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCC----------------------------EEEEEE-CSSCEEEEEECTTSCEEEEEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCe----------------------------EEEEEe-CCCCccceEECCCCCEEEEEc
Confidence 445667777789999999987622 222222 123466899999999999999
Q ss_pred CCCeEEEEeCC--CCceeEEeecCCcCeeEEEEc----CCCCEEEEEe-CCCeEEEEECCCCceeEEeccC---------
Q 005277 441 ADTTIRLWSTK--LNANLVCYKGHNYPVWDVQFN----PQGHYFASSS-HDRTARIWSMDRIQPLRIMAGH--------- 504 (704)
Q Consensus 441 ~Dg~I~lwd~~--~~~~~~~~~~h~~~V~~v~~s----p~~~~l~sgs-~dg~i~lwd~~~~~~~~~~~~~--------- 504 (704)
.|+.|.+||+. +.+.+..+.... ....++|+ |+|+++++++ .++++.++|..+.+++..+...
T Consensus 216 ~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~ 294 (567)
T 1qks_A 216 RDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEY 294 (567)
T ss_dssp TTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCE
T ss_pred CCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccc
Confidence 99999999996 777777777544 35789999 6999887776 5699999999999988776521
Q ss_pred --CCCeeEEEEcCCCCEEEE-EECCCcEEEEeCCCCcEEEEe-ecCCCCEEEEEEecCCCEEEEEe-CCCeEEEEeCCCC
Q 005277 505 --LSDVDCVRWHINCNYIAT-GSSDKTVRLWDVSSGECVRIF-IGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLASG 579 (704)
Q Consensus 505 --~~~V~~v~~~p~~~~l~t-gs~dg~I~iwd~~~~~~~~~~-~~h~~~i~~l~~spdg~~l~sg~-~dg~I~iwdl~~~ 579 (704)
...+..+..++++..+++ ....|.|.++|..+.+..... .........+.|+|+|++++++. .++.|.++|+.++
T Consensus 295 ~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~ 374 (567)
T 1qks_A 295 HPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG 374 (567)
T ss_dssp ESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred cCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 125778888887665544 456799999999876433221 13345678899999999887655 6789999999999
Q ss_pred eeeeeecC-----CCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCC-CEEEEEe-CCCcEEEEeC
Q 005277 580 RCVTPLMG-----HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEG-SLLASGS-ADCTVKLWDV 652 (704)
Q Consensus 580 ~~~~~~~~-----h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g-~~lasgs-~Dg~V~iWd~ 652 (704)
+.+..+.. |.+. ...| ++|++ .+++++. .+++|.++|.
T Consensus 375 kl~~~i~vgg~~Phpg~--g~~~---------------------------------~~p~~g~v~~t~~~g~~~Vsvid~ 419 (567)
T 1qks_A 375 KLVAIEDTGGQTPHPGR--GANF---------------------------------VHPTFGPVWATSHMGDDSVALIGT 419 (567)
T ss_dssp EEEEEEECSSSSBCCTT--CEEE---------------------------------EETTTEEEEEEEBSSSSEEEEEEC
T ss_pred cEEEEEeccCcCCCCcc--ceee---------------------------------ECCCCCcEEEeCCCCCCeEEEecC
Confidence 87766543 2211 1111 06664 4445553 5689999999
Q ss_pred CCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEee
Q 005277 653 TTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 699 (704)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs 699 (704)
.+.... ...++.+.++......-..+.++|+++.|.+..
T Consensus 420 ~~~~~~--------~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~ 458 (567)
T 1qks_A 420 DPEGHP--------DNAWKILDSFPALGGGSLFIKTHPNSQYLYVDA 458 (567)
T ss_dssp CTTTCT--------TTBTSEEEEEECSCSCCCCEECCTTCSEEEEEC
T ss_pred CCCCCc--------cccCEEEEEEecCCCCCEEEEeCCCCCeEEEec
Confidence 873211 111233444444333334567889888777654
No 203
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.49 E-value=6.2e-11 Score=121.34 Aligned_cols=225 Identities=9% Similarity=-0.008 Sum_probs=163.5
Q ss_pred CccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE-eecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCcee
Q 005277 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVC-YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL 498 (704)
Q Consensus 420 h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~-~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~ 498 (704)
+...+.++++.+++..+++...++.|.+||.. +..... ...+...+.++++.++|.++++...++.|..|+.+. + .
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~-~ 89 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKG-I-I 89 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-C-E
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCC-c-E
Confidence 44678999999999977777668899999988 543322 223456789999999999888777788999999863 3 2
Q ss_pred EEec--cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEe-ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEe
Q 005277 499 RIMA--GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF-IGHRSMILSLAMSPDGRYMASGDEDGTIMMWD 575 (704)
Q Consensus 499 ~~~~--~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~-~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwd 575 (704)
..+. .....+.+++++|++.++++...++.|..||. +++..... ..+...+.+++++++|+.+++...++.|..||
T Consensus 90 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~ 168 (299)
T 2z2n_A 90 KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRIT 168 (299)
T ss_dssp EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEc
Confidence 2232 24567899999999988887777889999998 66544332 23456789999999998888777788999999
Q ss_pred CCCCeeeee-ecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCC
Q 005277 576 LASGRCVTP-LMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTT 654 (704)
Q Consensus 576 l~~~~~~~~-~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~ 654 (704)
. +++.... ...+...+..+.+ +++|.++++...++.|.+||. +
T Consensus 169 ~-~g~~~~~~~~~~~~~~~~i~~----------------------------------~~~g~l~v~~~~~~~i~~~~~-~ 212 (299)
T 2z2n_A 169 E-SGDITEFKIPTPASGPVGITK----------------------------------GNDDALWFVEIIGNKIGRITT-S 212 (299)
T ss_dssp T-TCCEEEEECSSTTCCEEEEEE----------------------------------CTTSSEEEEETTTTEEEEECT-T
T ss_pred C-CCcEEEeeCCCCCCcceeEEE----------------------------------CCCCCEEEEccCCceEEEECC-C
Confidence 8 6654432 2223344556666 888888777777889999998 5
Q ss_pred CccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEe
Q 005277 655 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAG 698 (704)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~g 698 (704)
+... ....+.....+.++.++++|.++++.
T Consensus 213 g~~~--------------~~~~~~~~~~~~~i~~~~~g~l~v~~ 242 (299)
T 2z2n_A 213 GEIT--------------EFKIPTPNARPHAITAGAGIDLWFTE 242 (299)
T ss_dssp CCEE--------------EEECSSTTCCEEEEEECSTTCEEEEE
T ss_pred CcEE--------------EEECCCCCCCceeEEECCCCCEEEec
Confidence 4321 01122344668899999999877664
No 204
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.48 E-value=8.8e-13 Score=140.05 Aligned_cols=182 Identities=14% Similarity=0.086 Sum_probs=140.6
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCC
Q 005277 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL 432 (704)
Q Consensus 353 ~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 432 (704)
.++.+++++...++++|+.++ +.+|++.......... .. . ... .....+.+ |+.++| +
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~---~~-------------~-~~~-~~~~~lp~-V~~l~f--d 96 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSD---ST-------------P-LTF-KWEKEIPD-VIFVCF--H 96 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSS---SC-------------C-CCC-SEEEECTT-EEEEEE--E
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccc---cc-------------c-ccc-eEEeeCCC-eeEEEE--C
Confidence 578899999999999999885 4569987522100000 00 0 001 11223566 999999 8
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEE
Q 005277 433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR 512 (704)
Q Consensus 433 ~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~ 512 (704)
+.+|+++ .++.|++||+.+.........|..++.++.+.+.. +++++.||.+.+||+.++.... +...|.|++
T Consensus 97 ~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~ 169 (388)
T 1xip_A 97 GDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFD 169 (388)
T ss_dssp TTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE----EEESEEEEE
T ss_pred CCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc----ccCCceEEE
Confidence 9999988 88999999999887777777888889988887653 8999999999999999876643 346899999
Q ss_pred EcCCCCEEEEEECCCcEEEEeCCCCcE--EEEe------e---cCCCCEEEEEEecCCCEEEEE
Q 005277 513 WHINCNYIATGSSDKTVRLWDVSSGEC--VRIF------I---GHRSMILSLAMSPDGRYMASG 565 (704)
Q Consensus 513 ~~p~~~~l~tgs~dg~I~iwd~~~~~~--~~~~------~---~h~~~i~~l~~spdg~~l~sg 565 (704)
|+|+| ++.|..||++++|+...+.. ...+ . +|...|.+++|.+++.++++-
T Consensus 170 WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 170 VTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp ECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred EcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 99999 78899999999999887775 5555 2 477899999999999998873
No 205
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.48 E-value=1.8e-11 Score=132.38 Aligned_cols=248 Identities=10% Similarity=0.115 Sum_probs=161.0
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCC
Q 005277 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL 432 (704)
Q Consensus 353 ~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 432 (704)
....++|+++++++++...++.|++||..+.. .......... .. ++|+|+
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~----------------------------~~~~~~~~~~-~~-ia~~~~ 181 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNK----------------------------VTTVHPGFKG-GK-PAVTKD 181 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTE----------------------------EEEEEETCCB-CB-CEECTT
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCE----------------------------EEEeeccCCC-Cc-eeEecC
Confidence 57889999999988888888999999986421 1111112222 23 899999
Q ss_pred CCEEEEEeCCC--eEEEEeCCCCceeEEe----ecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEE----ec
Q 005277 433 GDFILSSSADT--TIRLWSTKLNANLVCY----KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI----MA 502 (704)
Q Consensus 433 ~~~l~s~s~Dg--~I~lwd~~~~~~~~~~----~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~----~~ 502 (704)
++.|+++..++ .|.+|+...+.....+ ......+++++++|++..|+++..++.|+.||.+++..... ..
T Consensus 182 g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~ 261 (409)
T 3hrp_A 182 KQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELS 261 (409)
T ss_dssp SSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCC
T ss_pred CCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccccc
Confidence 99999888766 7999988766554333 22445678999999555555577789999999987653332 22
Q ss_pred cCCCCe--eEEEEcCC-CCEEEEEECCCcEEEEeCCCCcEEEEeecCC---------------CCEEEEEEecCCCEEEE
Q 005277 503 GHLSDV--DCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIFIGHR---------------SMILSLAMSPDGRYMAS 564 (704)
Q Consensus 503 ~~~~~V--~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~---------------~~i~~l~~spdg~~l~s 564 (704)
++...- ..++|+|+ +.++++...++.|+.|+.... +..+.++. .....++++|+|+++++
T Consensus 262 g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyva 339 (409)
T 3hrp_A 262 GSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIV 339 (409)
T ss_dssp SCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEE
T ss_pred CCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEE
Confidence 222222 39999995 555555667889999997543 33343432 35789999999997777
Q ss_pred Ee-CCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeC
Q 005277 565 GD-EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSA 643 (704)
Q Consensus 565 g~-~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~ 643 (704)
-. .++.|+.||+.++.. ..+.++... . .+ .++ . .....+ ..+.-.+++++|.++++-..
T Consensus 340 d~~~~~~I~~~~~~~G~v-~~~~g~~~~-~--g~------~~g-~------~~~~~~---~~P~giavd~~g~lyVad~~ 399 (409)
T 3hrp_A 340 DGFKGYCLRKLDILDGYV-STVAGQVDV-A--SQ------IDG-T------PLEATF---NYPYDICYDGEGGYWIAEAW 399 (409)
T ss_dssp ETTTTCEEEEEETTTTEE-EEEEECTTC-B--SC------CCB-S------TTTCCB---SSEEEEEECSSSEEEEEEST
T ss_pred eCCCCCEEEEEECCCCEE-EEEeCCCCC-C--Cc------CCC-C------hhceEe---CCceEEEEcCCCCEEEEECC
Confidence 77 889999999877764 333333110 0 00 000 0 000000 01111222888888888888
Q ss_pred CCcEEEEeC
Q 005277 644 DCTVKLWDV 652 (704)
Q Consensus 644 Dg~V~iWd~ 652 (704)
++.|+.+++
T Consensus 400 n~~Ir~i~~ 408 (409)
T 3hrp_A 400 GKAIRKYAV 408 (409)
T ss_dssp TCEEEEEEE
T ss_pred CCeEEEEEe
Confidence 888888765
No 206
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.45 E-value=3.7e-11 Score=124.31 Aligned_cols=227 Identities=10% Similarity=0.088 Sum_probs=155.2
Q ss_pred ccCeEEEEEcCCCCEEEE-------EeCCCeEEEEeCCCCceeEEee----cCCcCeeEEEEcCC-CCEEEEEeCCCeEE
Q 005277 421 SGPVYSASFSPLGDFILS-------SSADTTIRLWSTKLNANLVCYK----GHNYPVWDVQFNPQ-GHYFASSSHDRTAR 488 (704)
Q Consensus 421 ~~~V~~l~~sp~~~~l~s-------~s~Dg~I~lwd~~~~~~~~~~~----~h~~~V~~v~~sp~-~~~l~sgs~dg~i~ 488 (704)
-....+++|++++.++++ ++.++.|.+||..+++...... ++...+.+++++++ |++++ ++..+.|.
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v-~~~~~~l~ 95 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFV-ADMRLGLL 95 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEE-EETTTEEE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEE-EECCCCEE
Confidence 345689999999987777 5778899999988776543221 24467899999999 66444 44455799
Q ss_pred EEECCCCceeEE-ecc----CCCCeeEEEEcCCCCEEEEEECC---------------CcEEEEeCCCCcEEEEeecCCC
Q 005277 489 IWSMDRIQPLRI-MAG----HLSDVDCVRWHINCNYIATGSSD---------------KTVRLWDVSSGECVRIFIGHRS 548 (704)
Q Consensus 489 lwd~~~~~~~~~-~~~----~~~~V~~v~~~p~~~~l~tgs~d---------------g~I~iwd~~~~~~~~~~~~h~~ 548 (704)
+||.+ ++.... ... ....+.+++++|+|+++++...+ +.|..||.. ++..... .+..
T Consensus 96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~~ 172 (314)
T 1pjx_A 96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQ 172 (314)
T ss_dssp EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEES
T ss_pred EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-cCCC
Confidence 99998 554333 221 12357899999999887776554 567778765 5544333 3344
Q ss_pred CEEEEEEe----cCCCEEEEE-eCCCeEEEEeCC-CCe-----eeeeecCCC-ceeeeeeeeeeehcccccccccccccc
Q 005277 549 MILSLAMS----PDGRYMASG-DEDGTIMMWDLA-SGR-----CVTPLMGHT-SCVWTLAYRFLLLVTNAYLKISDKVST 616 (704)
Q Consensus 549 ~i~~l~~s----pdg~~l~sg-~~dg~I~iwdl~-~~~-----~~~~~~~h~-~~V~sl~~~~~~~~~~~~~~~~~~~~~ 616 (704)
....++|+ |+|+.|+.+ ..++.|.+||+. +++ ....+..+. .....+.+
T Consensus 173 ~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~------------------- 233 (314)
T 1pjx_A 173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDF------------------- 233 (314)
T ss_dssp SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEE-------------------
T ss_pred CcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEE-------------------
Confidence 57899999 999766555 567899999986 443 222233333 44555555
Q ss_pred ceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEE
Q 005277 617 GFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFA 696 (704)
Q Consensus 617 ~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La 696 (704)
+++|+++++...++.|.+||..++... ..+..+...+.+++|+++|..|.
T Consensus 234 ---------------d~~G~l~v~~~~~~~i~~~d~~~g~~~---------------~~~~~~~~~~~~i~~~~dg~~l~ 283 (314)
T 1pjx_A 234 ---------------DEDNNLLVANWGSSHIEVFGPDGGQPK---------------MRIRCPFEKPSNLHFKPQTKTIF 283 (314)
T ss_dssp ---------------BTTCCEEEEEETTTEEEEECTTCBSCS---------------EEEECSSSCEEEEEECTTSSEEE
T ss_pred ---------------CCCCCEEEEEcCCCEEEEEcCCCCcEe---------------EEEeCCCCCceeEEECCCCCEEE
Confidence 889998888888899999998754321 22223346789999999998555
Q ss_pred Eeec
Q 005277 697 AGAL 700 (704)
Q Consensus 697 ~gs~ 700 (704)
+++.
T Consensus 284 v~~~ 287 (314)
T 1pjx_A 284 VTEH 287 (314)
T ss_dssp EEET
T ss_pred EEeC
Confidence 5443
No 207
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.43 E-value=4e-10 Score=115.27 Aligned_cols=216 Identities=6% Similarity=-0.043 Sum_probs=150.8
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEE
Q 005277 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (704)
Q Consensus 350 ~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 429 (704)
....+.+++++++|.+.++...++.|..|+... ... ..........+.++++
T Consensus 60 ~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g-~~~---------------------------~~~~~~~~~~~~~i~~ 111 (300)
T 2qc5_A 60 PDAKVMCLIVSSLGDIWFTENGANKIGKLSKKG-GFT---------------------------EYPLPQPDSGPYGITE 111 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEE---------------------------EEECSSTTCCEEEEEE
T ss_pred CCCcceeEEECCCCCEEEEecCCCeEEEECCCC-CeE---------------------------EecCCCCCCCCccceE
Confidence 346789999999999888777788899998652 110 0111112356889999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCceeEE-eecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEE-eccCCCC
Q 005277 430 SPLGDFILSSSADTTIRLWSTKLNANLVC-YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI-MAGHLSD 507 (704)
Q Consensus 430 sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~-~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~-~~~~~~~ 507 (704)
.+++.++++...++.|..|+.. ++.... +......+.++++.++|+.+++...++.|..|+. +++.... ...+...
T Consensus 112 ~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~ 189 (300)
T 2qc5_A 112 GLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAA 189 (300)
T ss_dssp CSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCC
T ss_pred CCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCC
Confidence 9999988777778899999987 544322 2334557889999999997766666789999998 4444332 2234457
Q ss_pred eeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEE-eecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeee-e
Q 005277 508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI-FIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP-L 585 (704)
Q Consensus 508 V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~-~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~-~ 585 (704)
+.++++++++++.++....+.|.+||. ++..... ...+...+.+++++++|+..++...++.|..||. +++.... +
T Consensus 190 ~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~ 267 (300)
T 2qc5_A 190 PVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQL 267 (300)
T ss_dssp EEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEEC
T ss_pred cceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEEC
Confidence 889999999987777666778999998 5554443 2334567899999999997777667789999998 4443321 2
Q ss_pred cCCCceeeeeee
Q 005277 586 MGHTSCVWTLAY 597 (704)
Q Consensus 586 ~~h~~~V~sl~~ 597 (704)
......+.++..
T Consensus 268 ~~~~~~~~~i~~ 279 (300)
T 2qc5_A 268 QTENAEPHGITF 279 (300)
T ss_dssp CSTTCCCCCEEE
T ss_pred CccCCccceeEe
Confidence 223344556655
No 208
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.43 E-value=5e-11 Score=123.02 Aligned_cols=213 Identities=13% Similarity=0.182 Sum_probs=149.7
Q ss_pred CEEEEEEcCC-CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcC
Q 005277 353 GLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (704)
Q Consensus 353 ~V~~~~fs~d-g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 431 (704)
---+..|+++ +.++++...++.|..|+..+... ..+ .+...+.++++++
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-----------------------------~~~-~~~~~~~~i~~~~ 63 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-----------------------------QRV-TMDAPVSSVALRQ 63 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-----------------------------EEE-ECSSCEEEEEEBT
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-----------------------------EEE-eCCCceEEEEECC
Confidence 4568899995 66777777889999999765210 111 1345789999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEeec----CCcCeeEEEEcCCCCEEEEEeC---------CCeEEEEECCCCcee
Q 005277 432 LGDFILSSSADTTIRLWSTKLNANLVCYKG----HNYPVWDVQFNPQGHYFASSSH---------DRTARIWSMDRIQPL 498 (704)
Q Consensus 432 ~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~----h~~~V~~v~~sp~~~~l~sgs~---------dg~i~lwd~~~~~~~ 498 (704)
+++++++ . ++.|.+||..+++....... ....+.+++++|+|+++++... .....+|.++.....
T Consensus 64 dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~ 141 (297)
T 3g4e_A 64 SGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV 141 (297)
T ss_dssp TSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE
T ss_pred CCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCE
Confidence 9995554 4 56799999987765433322 1245789999999996665432 133455655433233
Q ss_pred EEeccCCCCeeEEEEcCCCCEEEE-EECCCcEEEEeC--CCCcEE-----EEeecCCCCEEEEEEecCCCEEEEEeCCCe
Q 005277 499 RIMAGHLSDVDCVRWHINCNYIAT-GSSDKTVRLWDV--SSGECV-----RIFIGHRSMILSLAMSPDGRYMASGDEDGT 570 (704)
Q Consensus 499 ~~~~~~~~~V~~v~~~p~~~~l~t-gs~dg~I~iwd~--~~~~~~-----~~~~~h~~~i~~l~~spdg~~l~sg~~dg~ 570 (704)
..+..+......++|+|+++.|+. .+.++.|.+||+ .+|... ..+..+.+.+..++++++|++.++...++.
T Consensus 142 ~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~ 221 (297)
T 3g4e_A 142 KKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGR 221 (297)
T ss_dssp EEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTE
T ss_pred EEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCE
Confidence 333334456788999999987755 455788999987 455432 222334467889999999998888878889
Q ss_pred EEEEeCCCCeeeeeecCCCceeeeeee
Q 005277 571 IMMWDLASGRCVTPLMGHTSCVWTLAY 597 (704)
Q Consensus 571 I~iwdl~~~~~~~~~~~h~~~V~sl~~ 597 (704)
|.+||..+++.+..+..+...+++++|
T Consensus 222 v~~~d~~tG~~~~~i~~p~~~~t~~~f 248 (297)
T 3g4e_A 222 VIRLDPVTGKRLQTVKLPVDKTTSCCF 248 (297)
T ss_dssp EEEECTTTCCEEEEEECSSSBEEEEEE
T ss_pred EEEEcCCCceEEEEEECCCCCceEEEE
Confidence 999999999999888877778889988
No 209
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.42 E-value=3e-12 Score=135.90 Aligned_cols=161 Identities=11% Similarity=0.025 Sum_probs=130.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-----------eeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEE
Q 005277 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNA-----------NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS 491 (704)
Q Consensus 423 ~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~-----------~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd 491 (704)
+++.+++++...++++|+.++ +++|++.... ..... .+.. |+.++| ++.+++++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 689999999999999999985 6669865332 11222 3566 999999 99999999 889999999
Q ss_pred CCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeE
Q 005277 492 MDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTI 571 (704)
Q Consensus 492 ~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I 571 (704)
+++.........|...+.++.+.+. .+++++.||.|.+||+.++.... +...|+|++|||+| ++.|..||.+
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i 184 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSF 184 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCE
T ss_pred chhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcE
Confidence 9887766666677788888877654 38889999999999999887654 34589999999999 7789999999
Q ss_pred EEEeCCCCee--eeee------c---CCCceeeeeee
Q 005277 572 MMWDLASGRC--VTPL------M---GHTSCVWTLAY 597 (704)
Q Consensus 572 ~iwdl~~~~~--~~~~------~---~h~~~V~sl~~ 597 (704)
++|+...+.. ..++ . +|...|.++.|
T Consensus 185 ~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~w 221 (388)
T 1xip_A 185 QSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTI 221 (388)
T ss_dssp EEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEE
T ss_pred EEEcCCCccccccceecCCcccccccCCCeeEEEEEE
Confidence 9999887775 5555 2 47889999999
No 210
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.40 E-value=3.2e-11 Score=139.84 Aligned_cols=236 Identities=13% Similarity=0.112 Sum_probs=158.9
Q ss_pred CCCEEEEEEcCCCCEEEEEe-----CCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC--
Q 005277 351 HNGLNCASISQDGSLVAGGF-----SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP-- 423 (704)
Q Consensus 351 ~~~V~~~~fs~dg~~lasg~-----~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-- 423 (704)
...+..++|||||++||.+. ....|++||+.+... ... +...
T Consensus 128 ~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~----------------------------~~~---~~~~~k 176 (693)
T 3iuj_A 128 TTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQP----------------------------LET---PLKDVK 176 (693)
T ss_dssp CCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSE----------------------------EEE---EEEEEE
T ss_pred cEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCC----------------------------Ccc---ccCCce
Confidence 34688899999999999643 335699999886321 110 1112
Q ss_pred eEEEEEcCCCCEEEEEeCCCe-------------EEEEeCCCCce--eEEee--c-CCcCeeEEEEcCCCCEEEEEeC--
Q 005277 424 VYSASFSPLGDFILSSSADTT-------------IRLWSTKLNAN--LVCYK--G-HNYPVWDVQFNPQGHYFASSSH-- 483 (704)
Q Consensus 424 V~~l~~sp~~~~l~s~s~Dg~-------------I~lwd~~~~~~--~~~~~--~-h~~~V~~v~~sp~~~~l~sgs~-- 483 (704)
..+++|+ |++.|+.++.+.. |++|++.+... ...+. . |...+.++.|+|+|++++....
T Consensus 177 ~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~ 255 (693)
T 3iuj_A 177 FSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANS 255 (693)
T ss_dssp SCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESS
T ss_pred eccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccC
Confidence 3567899 9999998887743 99999987653 33333 2 3445788999999998765442
Q ss_pred --CCeEEEEECCCCc-eeEEeccCCCCeeEEEEcCCCCEEEEEE-CC---CcEEEEeCCCCcE--EEEeecCCCCEEEEE
Q 005277 484 --DRTARIWSMDRIQ-PLRIMAGHLSDVDCVRWHINCNYIATGS-SD---KTVRLWDVSSGEC--VRIFIGHRSMILSLA 554 (704)
Q Consensus 484 --dg~i~lwd~~~~~-~~~~~~~~~~~V~~v~~~p~~~~l~tgs-~d---g~I~iwd~~~~~~--~~~~~~h~~~i~~l~ 554 (704)
++.+.+||++++. ....+..+....... |++++..|+..+ .+ +.|..+|+.++.. .+.+..|...+. .
T Consensus 256 ~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~ 332 (693)
T 3iuj_A 256 TSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--T 332 (693)
T ss_dssp SSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--E
T ss_pred CCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--E
Confidence 3589999998763 445555565555554 566666665544 33 6799999987754 345666766665 8
Q ss_pred EecCCCEEEEEeCCC---eEEEEeCCCCeeeeeec-CCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecc
Q 005277 555 MSPDGRYMASGDEDG---TIMMWDLASGRCVTPLM-GHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGC 630 (704)
Q Consensus 555 ~spdg~~l~sg~~dg---~I~iwdl~~~~~~~~~~-~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (704)
|++++++|+....++ .|++||+..+. ...+. ...+.+..+.+
T Consensus 333 ~s~~g~~lv~~~~~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~--------------------------------- 378 (693)
T 3iuj_A 333 VHSGSGYLFAEYMVDATARVEQFDYEGKR-VREVALPGLGSVSGFNG--------------------------------- 378 (693)
T ss_dssp EEEETTEEEEEEEETTEEEEEEECTTSCE-EEEECCSSSSEEEECCC---------------------------------
T ss_pred EEEECCEEEEEEEECCeeEEEEEECCCCe-eEEeecCCCceEEeeec---------------------------------
Confidence 999999887765443 68999987543 34443 33455666665
Q ss_pred cCCCCCEEEEEeCC----CcEEEEeCCCCc
Q 005277 631 ASCEGSLLASGSAD----CTVKLWDVTTST 656 (704)
Q Consensus 631 ~s~~g~~lasgs~D----g~V~iWd~~~~~ 656 (704)
++++..++....+ ++|..||+.++.
T Consensus 379 -~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 379 -KHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp -CTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred -CCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 7777766555444 789999987765
No 211
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.39 E-value=2.4e-10 Score=117.90 Aligned_cols=226 Identities=12% Similarity=0.105 Sum_probs=149.5
Q ss_pred CccCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCcee
Q 005277 420 HSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL 498 (704)
Q Consensus 420 h~~~V~~l~~sp~~~-~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~ 498 (704)
+..-..+..|+|++. ++++...++.|..||..++.. ..+. ....+.+++++++|+++++ . ++.|.+||.++++..
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~ 86 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAV 86 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEE
Confidence 334456889999655 555667789999999987654 3333 4567999999999995544 4 578999999877644
Q ss_pred EEecc----CCCCeeEEEEcCCCCEEEEEECC---------CcEEEEeCCC-CcEEEEeecCCCCEEEEEEecCCCEEE-
Q 005277 499 RIMAG----HLSDVDCVRWHINCNYIATGSSD---------KTVRLWDVSS-GECVRIFIGHRSMILSLAMSPDGRYMA- 563 (704)
Q Consensus 499 ~~~~~----~~~~V~~v~~~p~~~~l~tgs~d---------g~I~iwd~~~-~~~~~~~~~h~~~i~~l~~spdg~~l~- 563 (704)
..... ....+..++++|+|+++++.... ....+|.+.. ++... +..+......++|+|+|+.|+
T Consensus 87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~~~~~~pngi~~spdg~~lyv 165 (297)
T 3g4e_A 87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YFDQVDISNGLDWSLDHKIFYY 165 (297)
T ss_dssp EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EEEEESBEEEEEECTTSCEEEE
T ss_pred EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE-EeeccccccceEEcCCCCEEEE
Confidence 33322 12347889999999966654321 2334554432 44333 333445578999999998765
Q ss_pred EEeCCCeEEEEeC--CCCeee-----eeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCC
Q 005277 564 SGDEDGTIMMWDL--ASGRCV-----TPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGS 636 (704)
Q Consensus 564 sg~~dg~I~iwdl--~~~~~~-----~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 636 (704)
+.+.++.|.+||+ .++... ..+..+.+....+.+ +++|+
T Consensus 166 ~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~----------------------------------d~~G~ 211 (297)
T 3g4e_A 166 IDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCI----------------------------------DAEGK 211 (297)
T ss_dssp EEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEE----------------------------------BTTSC
T ss_pred ecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEE----------------------------------CCCCC
Confidence 4556789999987 455421 122222234444554 88998
Q ss_pred EEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEc-cCCcEEEEee
Q 005277 637 LLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFS-RRNLLFAAGA 699 (704)
Q Consensus 637 ~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs-~~g~~La~gs 699 (704)
+.++...++.|.+||..+++. +..+......+++++|. |++..|.+++
T Consensus 212 lwva~~~~~~v~~~d~~tG~~---------------~~~i~~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 212 LWVACYNGGRVIRLDPVTGKR---------------LQTVKLPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp EEEEEETTTEEEEECTTTCCE---------------EEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred EEEEEcCCCEEEEEcCCCceE---------------EEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence 888888888999999987653 23333344578999998 8876554444
No 212
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.39 E-value=1.1e-10 Score=126.20 Aligned_cols=256 Identities=11% Similarity=0.039 Sum_probs=158.8
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCC--eEEEEECCCCceeE
Q 005277 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR--TARIWSMDRIQPLR 499 (704)
Q Consensus 422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg--~i~lwd~~~~~~~~ 499 (704)
....+++|+++++++++...++.|++||..++........... .. ++|+|++..++++..++ .|.+|+........
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 3578999999999777777889999999997766655554333 33 99999999998888766 78888887655444
Q ss_pred Ee----ccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEE----eecCCCCE--EEEEEecC-CCEEEEEeCC
Q 005277 500 IM----AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI----FIGHRSMI--LSLAMSPD-GRYMASGDED 568 (704)
Q Consensus 500 ~~----~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~----~~~h~~~i--~~l~~spd-g~~l~sg~~d 568 (704)
.+ ......+.+++++|++..|+++..++.|+.||..++..... ..++...- ..++|+|+ +.++++-..+
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~ 288 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL 288 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence 44 22456788999999655666677788999999987764332 22222222 39999995 6666666778
Q ss_pred CeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEe-CCCcE
Q 005277 569 GTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGS-ADCTV 647 (704)
Q Consensus 569 g~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs-~Dg~V 647 (704)
+.|+.||.... +..+.++.... .+. ++ .. ....+ ..+.-.+++++|+++++-+ .++.|
T Consensus 289 ~~I~~~~~~g~--~~~~~g~~~~~---g~~------dg-~~------~~~~~---~~P~gia~d~dG~lyvad~~~~~~I 347 (409)
T 3hrp_A 289 SSVYKITPDGE--CEWFCGSATQK---TVQ------DG-LR------EEALF---AQPNGMTVDEDGNFYIVDGFKGYCL 347 (409)
T ss_dssp TEEEEECTTCC--EEEEEECTTCC---SCB------CE-EG------GGCBC---SSEEEEEECTTCCEEEEETTTTCEE
T ss_pred CEEEEEecCCC--EEEEEeCCCCC---CcC------CC-cc------cccEe---CCCeEEEEeCCCCEEEEeCCCCCEE
Confidence 89999997643 22332221000 000 00 00 00000 0011223389999888888 89999
Q ss_pred EEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecC
Q 005277 648 KLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS 701 (704)
Q Consensus 648 ~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~d 701 (704)
+.|++.++.... ............-......-.....++++++|.++++-..+
T Consensus 348 ~~~~~~~G~v~~-~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n 400 (409)
T 3hrp_A 348 RKLDILDGYVST-VAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWG 400 (409)
T ss_dssp EEEETTTTEEEE-EEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTT
T ss_pred EEEECCCCEEEE-EeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCC
Confidence 999987664321 11110000000000001112457899999999888776544
No 213
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.37 E-value=1.2e-10 Score=120.69 Aligned_cols=231 Identities=8% Similarity=0.049 Sum_probs=157.9
Q ss_pred EeeCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277 347 FINTHNGLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (704)
Q Consensus 347 ~~~~~~~V~~~~fs~dg~-~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (704)
+...........|+|+|+ +++++..++.|..|+... ....+..+...+.
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g------------------------------~~~~~~~~~~~~~ 89 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG------------------------------TVDVLLDATAFTN 89 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS------------------------------CEEEEEESCSCEE
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC------------------------------CEEEEeCCCCccc
Confidence 344455678899999998 777788889999998632 0122223456789
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecC----CcCeeEEEEcCCCCEEEE----EeC-------------C
Q 005277 426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH----NYPVWDVQFNPQGHYFAS----SSH-------------D 484 (704)
Q Consensus 426 ~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h----~~~V~~v~~sp~~~~l~s----gs~-------------d 484 (704)
+++++++|+++++...++.|.+|+.. ++........ ...+.++++.|+|+++++ |.. .
T Consensus 90 gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~ 168 (305)
T 3dr2_A 90 GNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAH 168 (305)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSC
T ss_pred eeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCC
Confidence 99999999976666666889999986 5432221111 134678999999998876 332 2
Q ss_pred CeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECC------CcEEEEeCCCCcE--EEEe-ecCCCCEEEEEE
Q 005277 485 RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD------KTVRLWDVSSGEC--VRIF-IGHRSMILSLAM 555 (704)
Q Consensus 485 g~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d------g~I~iwd~~~~~~--~~~~-~~h~~~i~~l~~ 555 (704)
+.|..||..+++..... .......++|+|+++.|+++... +.|++||+..+.. ...+ ....+....+++
T Consensus 169 ~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~ 246 (305)
T 3dr2_A 169 HSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCV 246 (305)
T ss_dssp EEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEE
T ss_pred CeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEE
Confidence 56777777666554433 44567889999999988887665 7899999876541 1122 112344567899
Q ss_pred ecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCC
Q 005277 556 SPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEG 635 (704)
Q Consensus 556 spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g 635 (704)
+++|++. +++.+ .|.+||. .++.+..+..+. .+.++.| ++++
T Consensus 247 d~~G~lw-v~~~~-gv~~~~~-~g~~~~~~~~~~-~~~~~~f----------------------------------~~d~ 288 (305)
T 3dr2_A 247 DRGGWLW-SSSGT-GVCVFDS-DGQLLGHIPTPG-TASNCTF----------------------------------DQAQ 288 (305)
T ss_dssp CTTSCEE-ECCSS-EEEEECT-TSCEEEEEECSS-CCCEEEE----------------------------------CTTS
T ss_pred CCCCCEE-EecCC-cEEEECC-CCCEEEEEECCC-ceeEEEE----------------------------------eCCC
Confidence 9999944 44444 4999997 577777666554 4677777 8888
Q ss_pred CEEEEEeCCCcEE
Q 005277 636 SLLASGSADCTVK 648 (704)
Q Consensus 636 ~~lasgs~Dg~V~ 648 (704)
+.|+.++.++..+
T Consensus 289 ~~L~it~~~~l~~ 301 (305)
T 3dr2_A 289 QRLFITGGPCLWM 301 (305)
T ss_dssp CEEEEEETTEEEE
T ss_pred CEEEEEcCCeEEE
Confidence 8888887764333
No 214
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.37 E-value=3.1e-10 Score=118.75 Aligned_cols=209 Identities=9% Similarity=-0.026 Sum_probs=144.1
Q ss_pred CEEEEEEcCC-CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcC
Q 005277 353 GLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (704)
Q Consensus 353 ~V~~~~fs~d-g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 431 (704)
-..+..|+|+ +.+++++..++.|.+|+..+.. ...+. +...+.+++|+|
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~-----------------------------~~~~~-~~~~v~~i~~~~ 99 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGR-----------------------------KTVHA-LPFMGSALAKIS 99 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTE-----------------------------EEEEE-CSSCEEEEEEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCc-----------------------------EEEEE-CCCcceEEEEeC
Confidence 3567899997 5667777778999999976411 11111 235789999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEeec----CCcCeeEEEEcCCCCEEEEEeC------CCeEEEEECCCCceeEEe
Q 005277 432 LGDFILSSSADTTIRLWSTKLNANLVCYKG----HNYPVWDVQFNPQGHYFASSSH------DRTARIWSMDRIQPLRIM 501 (704)
Q Consensus 432 ~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~----h~~~V~~v~~sp~~~~l~sgs~------dg~i~lwd~~~~~~~~~~ 501 (704)
++++++++ .+ .|.+||..+++....... ....+.++.++|+|+++++... .+.|..++ +++. ..+
T Consensus 100 dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~ 174 (326)
T 2ghs_A 100 DSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKV-TKL 174 (326)
T ss_dssp TTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEE-EEE
T ss_pred CCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcE-EEe
Confidence 99877654 44 499999987765432221 1235889999999987665432 24555555 4433 333
Q ss_pred ccCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCC--CC-c-----EEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEE
Q 005277 502 AGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVS--SG-E-----CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM 572 (704)
Q Consensus 502 ~~~~~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~--~~-~-----~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~ 572 (704)
..+......++|+|+++.++.+. .++.|.+||+. +| . .+..+......+..++++++|++.++...++.|.
T Consensus 175 ~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~ 254 (326)
T 2ghs_A 175 FADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVD 254 (326)
T ss_dssp EEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEE
T ss_pred eCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEE
Confidence 33344577899999998776554 56899999986 56 3 1222333445678999999998877777778999
Q ss_pred EEeCCCCeeeeeecCCCceeeeeee
Q 005277 573 MWDLASGRCVTPLMGHTSCVWTLAY 597 (704)
Q Consensus 573 iwdl~~~~~~~~~~~h~~~V~sl~~ 597 (704)
+||. +++.+..+..+...+++++|
T Consensus 255 ~~d~-~g~~~~~i~~~~~~~~~~af 278 (326)
T 2ghs_A 255 RYDT-DGNHIARYEVPGKQTTCPAF 278 (326)
T ss_dssp EECT-TCCEEEEEECSCSBEEEEEE
T ss_pred EECC-CCCEEEEEECCCCCcEEEEE
Confidence 9998 67777777766667888888
No 215
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.36 E-value=6.7e-11 Score=124.79 Aligned_cols=265 Identities=11% Similarity=0.030 Sum_probs=170.8
Q ss_pred CCEEEEEEcCCCCEEEEEe--CCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEE
Q 005277 352 NGLNCASISQDGSLVAGGF--SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (704)
Q Consensus 352 ~~V~~~~fs~dg~~lasg~--~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 429 (704)
..+..++++++|+++++.. .++.++||.+.. +... . .... . ....+|-..+.++++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~-g~~~--~-~p~~--------------~----~~~~~~~~~p~gv~~ 74 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQ-DGLI--P-FPPQ--------------S----GNAIITFDTVLGIKS 74 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEET-TEEE--E-SCCC--------------C----SSCCCCCSCEEEEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECC-CCee--c-CCCc--------------c----cCcccceeEeeEEEE
Confidence 6789999999999988864 245467777652 1110 0 0000 0 012246678999999
Q ss_pred cCCCCEEEEEeC-----CCeEEEEeCCCCceeEEeecC------CcCeeEEEEcCCC-CEEEEEe---CCCeEEEEECCC
Q 005277 430 SPLGDFILSSSA-----DTTIRLWSTKLNANLVCYKGH------NYPVWDVQFNPQG-HYFASSS---HDRTARIWSMDR 494 (704)
Q Consensus 430 sp~~~~l~s~s~-----Dg~I~lwd~~~~~~~~~~~~h------~~~V~~v~~sp~~-~~l~sgs---~dg~i~lwd~~~ 494 (704)
+++++++++-+. ++.|.+||+.+++.+..+... ...+.++++++++ ..+++.. .++.|.+||+.+
T Consensus 75 d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~ 154 (343)
T 2qe8_A 75 DGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQT 154 (343)
T ss_dssp CSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTT
T ss_pred cCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCC
Confidence 999886665443 578999999988877666532 2356899999864 4445554 678999999998
Q ss_pred CceeEEeccCCCCee-EEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCC-eEE
Q 005277 495 IQPLRIMAGHLSDVD-CVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG-TIM 572 (704)
Q Consensus 495 ~~~~~~~~~~~~~V~-~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg-~I~ 572 (704)
++..+.+.+|..... ...+.++|..+.+.+.++.+..|. ..+..|+|+|+|+.|+++..++ .|.
T Consensus 155 g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~~l~ 220 (343)
T 2qe8_A 155 GLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHSTSMY 220 (343)
T ss_dssp CCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCSEEE
T ss_pred CCEEEEecCCCcccccccceeECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCCeEE
Confidence 887777765432111 144556777777778888876663 2367899999999998887766 444
Q ss_pred EEeCC---CCee-----ee--eecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEe
Q 005277 573 MWDLA---SGRC-----VT--PLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGS 642 (704)
Q Consensus 573 iwdl~---~~~~-----~~--~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs 642 (704)
.++.. .+.. .. ...++.+....+++ +++|.++++..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~----------------------------------d~~G~l~va~~ 266 (343)
T 2qe8_A 221 RIKSADLSNLQLTDAELGSKIERYSEKPICDGISI----------------------------------DKDHNIYVGDL 266 (343)
T ss_dssp EEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEE----------------------------------CTTCCEEEEEG
T ss_pred EEEHHHhcCCCCChhhhhcceEecccCCCCceEEE----------------------------------CCCCCEEEEcc
Confidence 44421 1100 00 00111222233444 88999999999
Q ss_pred CCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeec
Q 005277 643 ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL 700 (704)
Q Consensus 643 ~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~ 700 (704)
.++.|.+||..++.. ..+...+ ....+.+++|+++|.++++.+.
T Consensus 267 ~~~~V~~~d~~~G~~-------------~~~~~~~-~~~~p~~va~~~~g~l~v~~~~ 310 (343)
T 2qe8_A 267 AHSAIGVITSADRAY-------------KLLVTDE-KLSWTDSFNFGSDGYLYFDCNQ 310 (343)
T ss_dssp GGTEEEEEETTTTEE-------------EEEEECG-GGSCEEEEEECTTSCEEEEECC
T ss_pred CCCeEEEEECCCCCE-------------EEEEECC-ceecCCeeEECCCCcEEEEeCc
Confidence 999999999844431 1111111 2345789999999988887663
No 216
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.34 E-value=2.5e-09 Score=113.94 Aligned_cols=228 Identities=7% Similarity=-0.058 Sum_probs=146.4
Q ss_pred EEEEcCCCCEEEEEe----------CCCeEEEEeCCCCceeEEeecC-------CcCeeEEEEcCCCCEEEEEeC--CCe
Q 005277 426 SASFSPLGDFILSSS----------ADTTIRLWSTKLNANLVCYKGH-------NYPVWDVQFNPQGHYFASSSH--DRT 486 (704)
Q Consensus 426 ~l~~sp~~~~l~s~s----------~Dg~I~lwd~~~~~~~~~~~~h-------~~~V~~v~~sp~~~~l~sgs~--dg~ 486 (704)
.++++||+++++.+. .+++|.+||..+.+.+..+... ......+.|+|+|+++++++. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 899999999998875 3678999999988877766432 123458999999999998874 588
Q ss_pred EEEEECCCCceeEE-eccCCCCeeEEEEcCCC-CEEEEEECCCcEEEEeCCCCcEEEEee-----cCCCC-EEEEEEecC
Q 005277 487 ARIWSMDRIQPLRI-MAGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECVRIFI-----GHRSM-ILSLAMSPD 558 (704)
Q Consensus 487 i~lwd~~~~~~~~~-~~~~~~~V~~v~~~p~~-~~l~tgs~dg~I~iwd~~~~~~~~~~~-----~h~~~-i~~l~~spd 558 (704)
|.++| .+++.+.. +... .|+.+.|++ ..+++.+.||.+.+||. +++.+.... ....+ .....+.++
T Consensus 150 v~viD-~t~~~~~~~i~~~----~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~ 223 (373)
T 2mad_H 150 VGLVV-QGGSSDDQLLSSP----TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANK 223 (373)
T ss_pred EEEEE-CCCCEEeEEcCCC----ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEec
Confidence 99999 99888766 5422 134555655 45566778999999999 887763321 11122 233566777
Q ss_pred CCEEEEEeCCCeEEEEeCCCCe--eeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCC
Q 005277 559 GRYMASGDEDGTIMMWDLASGR--CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGS 636 (704)
Q Consensus 559 g~~l~sg~~dg~I~iwdl~~~~--~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 636 (704)
+..++..+..+.+.+.|+.++. .+..+...........|.+ .......++++++
T Consensus 224 ~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p------------------------~g~~~~~~s~d~~ 279 (373)
T 2mad_H 224 SGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRP------------------------GGWQQVAYLKSSD 279 (373)
T ss_pred CCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceec------------------------CceEeEEECCCCC
Confidence 6655555578899999987552 2222211111000111100 0000011288888
Q ss_pred EEEEEeC----------CCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCc-EEEEee
Q 005277 637 LLASGSA----------DCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL-LFAAGA 699 (704)
Q Consensus 637 ~lasgs~----------Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~-~La~gs 699 (704)
.++++.. ++.|.++|..+.+.+ .+++. .....++.|+|||+ +|+++.
T Consensus 280 ~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv---------------~~i~~-g~~p~~i~~s~Dg~~~l~v~~ 337 (373)
T 2mad_H 280 GIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS---------------SQISL-GHDVDAISVAQDGGPDLYALS 337 (373)
T ss_pred EEEEEeccCCcccccCCCCeEEEEECCCCEEE---------------EEEEC-CCCcCeEEECCCCCeEEEEEc
Confidence 7777543 357999999887543 33322 23578999999999 676665
No 217
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.34 E-value=1.2e-09 Score=116.38 Aligned_cols=241 Identities=9% Similarity=-0.081 Sum_probs=161.1
Q ss_pred EEEEcCCCCEEEEEe----------CCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277 356 CASISQDGSLVAGGF----------SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (704)
Q Consensus 356 ~~~fs~dg~~lasg~----------~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (704)
.++|||||++|.++. .++.|.+||..+........... .. ... +...-.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~----------------~~---~~~--~g~~p~ 128 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPD----------------AP---RFD--VGPYSW 128 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCC----------------cc---ccc--cCCCcc
Confidence 899999999999886 36789999987532211100000 00 000 012235
Q ss_pred EEEEcCCCCEEEEEeC--CCeEEEEeCCCCceeEE-eecCCcCeeEEEEcCCC-CEEEEEeCCCeEEEEECCCCceeEEe
Q 005277 426 SASFSPLGDFILSSSA--DTTIRLWSTKLNANLVC-YKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRIQPLRIM 501 (704)
Q Consensus 426 ~l~~sp~~~~l~s~s~--Dg~I~lwd~~~~~~~~~-~~~h~~~V~~v~~sp~~-~~l~sgs~dg~i~lwd~~~~~~~~~~ 501 (704)
.+.|+|||++|+.++. +++|.++| .+++.+.. +... . ++.+.|++ +.+++.+.||.+.+||. +++.....
T Consensus 129 ~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~ 202 (373)
T 2mad_H 129 MNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAG 202 (373)
T ss_pred ceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEE
Confidence 8899999999998874 57899999 98888776 5432 2 24455544 45677788999999999 77665322
Q ss_pred c-----cCCCC-eeEEEEcCCCCEEEEEECCCcEEEEeCCCCc--EEEEeec----------CCCCEEEEEEecCCCEEE
Q 005277 502 A-----GHLSD-VDCVRWHINCNYIATGSSDKTVRLWDVSSGE--CVRIFIG----------HRSMILSLAMSPDGRYMA 563 (704)
Q Consensus 502 ~-----~~~~~-V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~--~~~~~~~----------h~~~i~~l~~spdg~~l~ 563 (704)
. ....+ .....+.+++..++..+..+.+.+.|+.++. .+..+.. .......++++|+++.++
T Consensus 203 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~ly 282 (373)
T 2mad_H 203 LVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIY 282 (373)
T ss_pred eccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEE
Confidence 1 11112 1234556666555555578899999997553 2222211 112344578999999888
Q ss_pred EEeC----------CCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCC
Q 005277 564 SGDE----------DGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASC 633 (704)
Q Consensus 564 sg~~----------dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 633 (704)
++.. ++.|.++|+.+++.+.++.. ....+.+.| ++
T Consensus 283 V~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~----------------------------------s~ 327 (373)
T 2mad_H 283 LLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISV----------------------------------AQ 327 (373)
T ss_pred EEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEE----------------------------------CC
Confidence 7653 35899999999999888853 335778888 99
Q ss_pred CCC-EEEEEe-CCCcEEEEeCCCCccc
Q 005277 634 EGS-LLASGS-ADCTVKLWDVTTSTKV 658 (704)
Q Consensus 634 ~g~-~lasgs-~Dg~V~iWd~~~~~~~ 658 (704)
||+ +++++. .++.|.+||+.+.+.+
T Consensus 328 Dg~~~l~v~~~~~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 328 DGGPDLYALSAGTEVLHIYDAGAGDQD 354 (373)
T ss_pred CCCeEEEEEcCCCCeEEEEECCCCCEE
Confidence 999 777777 5899999999987754
No 218
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.34 E-value=7.7e-10 Score=115.71 Aligned_cols=220 Identities=10% Similarity=0.002 Sum_probs=145.4
Q ss_pred eEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec
Q 005277 424 VYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA 502 (704)
Q Consensus 424 V~~l~~sp~~~-~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~ 502 (704)
..+..|+|++. ++++...++.|..||..++... .+. ....+.++.|+|+|+++++. . +.|.+||.++++......
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~~~ 126 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHAE 126 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEEC
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEEEee
Confidence 46788999755 5556677889999999876543 333 34679999999999876654 4 459999998876543332
Q ss_pred c----CCCCeeEEEEcCCCCEEEEEEC------CCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEE-eCCCeE
Q 005277 503 G----HLSDVDCVRWHINCNYIATGSS------DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG-DEDGTI 571 (704)
Q Consensus 503 ~----~~~~V~~v~~~p~~~~l~tgs~------dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg-~~dg~I 571 (704)
. ....+..++++|+|+++++... .+.|..++ +++... +..+......++|+|+|+.|+.+ +.++.|
T Consensus 127 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I 203 (326)
T 2ghs_A 127 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKVNRL 203 (326)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTTCEE
T ss_pred CCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCCCEE
Confidence 1 1235789999999987665432 24566666 555433 33333457899999999877555 457899
Q ss_pred EEEeCC--CC-ee-----eeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeC
Q 005277 572 MMWDLA--SG-RC-----VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSA 643 (704)
Q Consensus 572 ~iwdl~--~~-~~-----~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~ 643 (704)
.+||+. ++ .. +..+.........+.+ +++|.+.++...
T Consensus 204 ~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~----------------------------------d~~G~lwva~~~ 249 (326)
T 2ghs_A 204 MRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVC----------------------------------DAEGHIWNARWG 249 (326)
T ss_dssp EEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEE----------------------------------CTTSCEEEEEET
T ss_pred EEEEcccccCCcccCceEEEECCCCCCCCCeeEE----------------------------------CCCCCEEEEEeC
Confidence 999986 55 32 1122222233344444 888988887777
Q ss_pred CCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEc-cCCcEEEEeec
Q 005277 644 DCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFS-RRNLLFAAGAL 700 (704)
Q Consensus 644 Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs-~~g~~La~gs~ 700 (704)
++.|.+|+. ++.. +..+......+++++|+ +++..|.+++.
T Consensus 250 ~~~v~~~d~-~g~~---------------~~~i~~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 250 EGAVDRYDT-DGNH---------------IARYEVPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp TTEEEEECT-TCCE---------------EEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred CCEEEEECC-CCCE---------------EEEEECCCCCcEEEEEecCCCCEEEEEec
Confidence 789999997 3332 22233334568999998 88766655443
No 219
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.33 E-value=2.3e-10 Score=118.43 Aligned_cols=227 Identities=12% Similarity=0.048 Sum_probs=151.4
Q ss_pred ccCCccCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 005277 417 YQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI 495 (704)
Q Consensus 417 ~~~h~~~V~~l~~sp~~~-~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~ 495 (704)
+..+.....+..|+|+++ +++++..++.|..|+.. +. ...+..+...+..++++++|+++++...++.|.+|+.+ +
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g 116 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-G 116 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-C
Confidence 334455678899999998 56677788999999984 44 45555566778999999999976665566889999986 4
Q ss_pred ceeEEecc----CCCCeeEEEEcCCCCEEEE----EEC-------------CCcEEEEeCCCCcEEEEeecCCCCEEEEE
Q 005277 496 QPLRIMAG----HLSDVDCVRWHINCNYIAT----GSS-------------DKTVRLWDVSSGECVRIFIGHRSMILSLA 554 (704)
Q Consensus 496 ~~~~~~~~----~~~~V~~v~~~p~~~~l~t----gs~-------------dg~I~iwd~~~~~~~~~~~~h~~~i~~l~ 554 (704)
+....... ....+..++++|+|++.++ |.. .+.|..||..+++..... .......++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~ 194 (305)
T 3dr2_A 117 QAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLA 194 (305)
T ss_dssp CEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEE
T ss_pred CEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceE
Confidence 43222211 1234678999999998886 332 256888888777655443 345678899
Q ss_pred EecCCCEEEEEeCC------CeEEEEeCCCCeeeee---e-cCCCceeeeeeeeeeehccccccccccccccceeeeeee
Q 005277 555 MSPDGRYMASGDED------GTIMMWDLASGRCVTP---L-MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLT 624 (704)
Q Consensus 555 ~spdg~~l~sg~~d------g~I~iwdl~~~~~~~~---~-~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (704)
|+|||+.|+.+... +.|.+||+..+. +.. + ....+....+.+
T Consensus 195 ~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~--------------------------- 246 (305)
T 3dr2_A 195 FSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCV--------------------------- 246 (305)
T ss_dssp ECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEE---------------------------
T ss_pred EcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEE---------------------------
Confidence 99999988877665 789999987654 211 1 111122223333
Q ss_pred EEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277 625 IIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 702 (704)
Q Consensus 625 ~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~dg 702 (704)
+++|++.++ +.+ .|.+|+... .. +..+.... .+.+++|++++..|.+++.++
T Consensus 247 -------d~~G~lwv~-~~~-gv~~~~~~g-~~---------------~~~~~~~~-~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 247 -------DRGGWLWSS-SGT-GVCVFDSDG-QL---------------LGHIPTPG-TASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp -------CTTSCEEEC-CSS-EEEEECTTS-CE---------------EEEEECSS-CCCEEEECTTSCEEEEEETTE
T ss_pred -------CCCCCEEEe-cCC-cEEEECCCC-CE---------------EEEEECCC-ceeEEEEeCCCCEEEEEcCCe
Confidence 888885544 444 499999743 22 22222222 478899999988777776543
No 220
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.25 E-value=2e-10 Score=133.19 Aligned_cols=197 Identities=14% Similarity=0.090 Sum_probs=135.0
Q ss_pred CccCeEEEEEcCCCCEEEEE-----eCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCe--------
Q 005277 420 HSGPVYSASFSPLGDFILSS-----SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT-------- 486 (704)
Q Consensus 420 h~~~V~~l~~sp~~~~l~s~-----s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~-------- 486 (704)
|...+.+++|||||++|+-+ +...+|++||+.+++.+.... +......++|+ ||+.|+.++.+..
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence 55578899999999988832 333579999999988654311 11123578999 9999999887743
Q ss_pred -----EEEEECCCCce--eEEecc---CCCCeeEEEEcCCCCEEEEEEC----CCcEEEEeCCCCc-EEEEeecCCCCEE
Q 005277 487 -----ARIWSMDRIQP--LRIMAG---HLSDVDCVRWHINCNYIATGSS----DKTVRLWDVSSGE-CVRIFIGHRSMIL 551 (704)
Q Consensus 487 -----i~lwd~~~~~~--~~~~~~---~~~~V~~v~~~p~~~~l~tgs~----dg~I~iwd~~~~~-~~~~~~~h~~~i~ 551 (704)
|++|++.+... ...+.. |...+..+.|+|+|++|+.... ...|++||+.++. ....+..+.....
T Consensus 205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~ 284 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADV 284 (693)
T ss_dssp CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCE
T ss_pred CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceE
Confidence 99999987643 334432 3445788999999999866543 3589999998763 3445556666665
Q ss_pred EEEEecCCCEEEEEe-C---CCeEEEEeCCCCee--eeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeE
Q 005277 552 SLAMSPDGRYMASGD-E---DGTIMMWDLASGRC--VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTI 625 (704)
Q Consensus 552 ~l~~spdg~~l~sg~-~---dg~I~iwdl~~~~~--~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (704)
.. |+++|..|+..+ . .+.|..||+.++.. ...+..|...+. .|
T Consensus 285 ~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~---------------------------- 333 (693)
T 3iuj_A 285 SL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TV---------------------------- 333 (693)
T ss_dssp EE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EE----------------------------
T ss_pred EE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EE----------------------------
Confidence 55 667766655444 3 36899999988754 344555655443 55
Q ss_pred EeecccCCCCCEEEEEeC-CC--cEEEEeCCCC
Q 005277 626 IYFGCASCEGSLLASGSA-DC--TVKLWDVTTS 655 (704)
Q Consensus 626 ~~~~~~s~~g~~lasgs~-Dg--~V~iWd~~~~ 655 (704)
+++++.|+.... +| .|++|++..+
T Consensus 334 ------s~~g~~lv~~~~~~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 334 ------HSGSGYLFAEYMVDATARVEQFDYEGK 360 (693)
T ss_dssp ------EEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred ------EEECCEEEEEEEECCeeEEEEEECCCC
Confidence 778887766654 44 6889988743
No 221
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.23 E-value=9.3e-10 Score=116.35 Aligned_cols=244 Identities=12% Similarity=0.047 Sum_probs=160.7
Q ss_pred EEEEcCCCCEEEEEe----------CCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277 356 CASISQDGSLVAGGF----------SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (704)
Q Consensus 356 ~~~fs~dg~~lasg~----------~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (704)
.+++||||+++.++. .++.|.+||..+...........+. + ......-.
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~-------------------r--~~~g~~P~ 140 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAP-------------------R--FLVGTYPW 140 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC-------------------C--CCBSCCGG
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcc-------------------c--cccCCCCc
Confidence 399999999887765 3678999998763321110000000 0 00011345
Q ss_pred EEEEcCCCCEEEEEeC--CCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCC-CceeEEec
Q 005277 426 SASFSPLGDFILSSSA--DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR-IQPLRIMA 502 (704)
Q Consensus 426 ~l~~sp~~~~l~s~s~--Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~-~~~~~~~~ 502 (704)
.+.|+|||++++.+.. +++|.++|+.+++.+..+.... . ...+....+.|++.+.||.+.+.++.. ++......
T Consensus 141 ~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~ 217 (386)
T 3sjl_D 141 MTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT 217 (386)
T ss_dssp GEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEEC
T ss_pred eEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeec
Confidence 6899999999988764 6899999999999988886422 1 223333556778888999999999976 44432221
Q ss_pred cCC----CCe-eEEEEc-CCCCEEEEEECCCcEEEEeCCCCcE--EEEee---c-------CCCCEEEEEEecCCCEEEE
Q 005277 503 GHL----SDV-DCVRWH-INCNYIATGSSDKTVRLWDVSSGEC--VRIFI---G-------HRSMILSLAMSPDGRYMAS 564 (704)
Q Consensus 503 ~~~----~~V-~~v~~~-p~~~~l~tgs~dg~I~iwd~~~~~~--~~~~~---~-------h~~~i~~l~~spdg~~l~s 564 (704)
.+. ..+ ....|. ++|++++ .+.+|.|++.|+.++.. +..+. . ..+.+..++++|+++.++.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV 296 (386)
T 3sjl_D 218 EVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYL 296 (386)
T ss_dssp CCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred ceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEE
Confidence 111 122 124564 5675555 55689999999976642 22121 0 1123345788999998887
Q ss_pred EeC----------CCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCC
Q 005277 565 GDE----------DGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCE 634 (704)
Q Consensus 565 g~~----------dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 634 (704)
... .+.|.+.|+.+++.+..+..- ..++++.+ +++
T Consensus 297 ~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lav----------------------------------s~D 341 (386)
T 3sjl_D 297 LVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINV----------------------------------SQD 341 (386)
T ss_dssp EEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEE----------------------------------CSS
T ss_pred EeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEE----------------------------------CCC
Confidence 643 257999999999999887532 36778888 999
Q ss_pred CC-EEEEE-eCCCcEEEEeCCCCcccc
Q 005277 635 GS-LLASG-SADCTVKLWDVTTSTKVL 659 (704)
Q Consensus 635 g~-~lasg-s~Dg~V~iWd~~~~~~~~ 659 (704)
++ +|+++ ..++.|.++|..+++.+.
T Consensus 342 ~~~~ly~tn~~~~~VsViD~~t~k~~~ 368 (386)
T 3sjl_D 342 EKPLLYALSTGDKTLYIHDAESGEELR 368 (386)
T ss_dssp SSCEEEEEETTTTEEEEEETTTCCEEE
T ss_pred CCeEEEEEcCCCCeEEEEECCCCcEEE
Confidence 86 66664 558999999999887643
No 222
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.21 E-value=2.6e-09 Score=112.89 Aligned_cols=255 Identities=14% Similarity=0.079 Sum_probs=165.2
Q ss_pred cCCCCEEEEEeC-----CCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCC
Q 005277 360 SQDGSLVAGGFS-----DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGD 434 (704)
Q Consensus 360 s~dg~~lasg~~-----dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~ 434 (704)
.|+++.+.+... ++.|.+.|..+. +.......-..+ .++++||++
T Consensus 41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~----------------------------~v~~~I~vG~~P--~va~spDG~ 90 (386)
T 3sjl_D 41 APDARRVYVNDPAHFAAVTQQFVIDGEAG----------------------------RVIGMIDGGFLP--NPVVADDGS 90 (386)
T ss_dssp CCCTTEEEEEECGGGCSSEEEEEEETTTT----------------------------EEEEEEEECSSC--EEEECTTSS
T ss_pred CCCCCEEEEEcCcccCCCCEEEEEECCCC----------------------------eEEEEEECCCCC--cEEECCCCC
Confidence 577777777654 578999998752 222222222234 499999999
Q ss_pred EEEEEe----------CCCeEEEEeCCCCceeEEeecC-------CcCeeEEEEcCCCCEEEEEeC--CCeEEEEECCCC
Q 005277 435 FILSSS----------ADTTIRLWSTKLNANLVCYKGH-------NYPVWDVQFNPQGHYFASSSH--DRTARIWSMDRI 495 (704)
Q Consensus 435 ~l~s~s----------~Dg~I~lwd~~~~~~~~~~~~h-------~~~V~~v~~sp~~~~l~sgs~--dg~i~lwd~~~~ 495 (704)
++++++ .+++|.+||..+.+.+..+.-. ......+.|+|+|++++++.. ++.|.++|+.+.
T Consensus 91 ~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~ 170 (386)
T 3sjl_D 91 FIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK 170 (386)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTT
T ss_pred EEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCC
Confidence 888765 3678999999999988877532 124668999999999988864 689999999999
Q ss_pred ceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC-CcEEEEeecC----CCCEE-EEEEe-cCCCEEEEEeCC
Q 005277 496 QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-GECVRIFIGH----RSMIL-SLAMS-PDGRYMASGDED 568 (704)
Q Consensus 496 ~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~-~~~~~~~~~h----~~~i~-~l~~s-pdg~~l~sg~~d 568 (704)
+.+..+.... . ...+......+++.+.||++.+.++.+ ++.......+ ..++. ...|. ++|++++ .+.+
T Consensus 171 ~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~ 246 (386)
T 3sjl_D 171 AFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYT 246 (386)
T ss_dssp EEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTT
T ss_pred cEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCC
Confidence 9888875321 1 222333446777888899999999976 5543322111 12221 24664 6786555 5568
Q ss_pred CeEEEEeCCCCe--eeeeecCC----------CceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCC
Q 005277 569 GTIMMWDLASGR--CVTPLMGH----------TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGS 636 (704)
Q Consensus 569 g~I~iwdl~~~~--~~~~~~~h----------~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 636 (704)
|.|.+.|+.++. .+..+... .+....+.+ +++++
T Consensus 247 g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~----------------------------------~~~~~ 292 (386)
T 3sjl_D 247 GKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAY----------------------------------HRALD 292 (386)
T ss_dssp SEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEE----------------------------------ETTTT
T ss_pred CEEEEEECCCCcceeecceeccccccccccccCCCcceeeE----------------------------------CCCCC
Confidence 999999987654 22222100 001111222 67777
Q ss_pred EEEEEeC----------CCcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCc-EEEEe
Q 005277 637 LLASGSA----------DCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL-LFAAG 698 (704)
Q Consensus 637 ~lasgs~----------Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~-~La~g 698 (704)
.++.... .+.|.+.|+.+.+.+ ..++. ..++..+.|++|++ +|.++
T Consensus 293 ~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~---------------~~i~v-g~~~~~lavs~D~~~~ly~t 349 (386)
T 3sjl_D 293 RIYLLVDQRDEWRHKTASRFVVVLDAKTGERL---------------AKFEM-GHEIDSINVSQDEKPLLYAL 349 (386)
T ss_dssp EEEEEEEECCTTCTTSCEEEEEEEETTTCCEE---------------EEEEE-EEEECEEEECSSSSCEEEEE
T ss_pred eEEEEeccccccccCCCCCEEEEEECCCCeEE---------------EEEEC-CCCcceEEECCCCCeEEEEE
Confidence 7766542 257999999887654 22222 23688999999996 55554
No 223
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.20 E-value=8.2e-12 Score=133.25 Aligned_cols=185 Identities=14% Similarity=0.070 Sum_probs=109.7
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCC-eeE
Q 005277 432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD-VDC 510 (704)
Q Consensus 432 ~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~-V~~ 510 (704)
++..+++++.||.|+.||..+++.+..+.. .++.+..+..++..+++++.||.++.||..+++.+..+..+... +.+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 477899999999999999999999988876 55666666667878888889999999999988877665433211 110
Q ss_pred -EEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCC
Q 005277 511 -VRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT 589 (704)
Q Consensus 511 -v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~ 589 (704)
..+ ..+..+++|+.++.|+.||..+|+.+..+..+. ...++|++..+++++.|+.|+.||..+|+.+..+..+.
T Consensus 86 sp~~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~ 160 (369)
T 2hz6_A 86 SPCR-SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD 160 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE
T ss_pred CceE-ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc
Confidence 011 135578888889999999999999988776543 24566788899999999999999999998765543111
Q ss_pred ceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCC---CCEEEEEeCCCcEEEEeCCCCcccc
Q 005277 590 SCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCE---GSLLASGSADCTVKLWDVTTSTKVL 659 (704)
Q Consensus 590 ~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~---g~~lasgs~Dg~V~iWd~~~~~~~~ 659 (704)
.....+ +.+ ...+++++.||.|+.||..+++...
T Consensus 161 --~~~~~~----------------------------------~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W 197 (369)
T 2hz6_A 161 --YAASLP----------------------------------EDDVDYKMSHFVSNGDGLVVTVDSESGDVLW 197 (369)
T ss_dssp --ECCBCC----------------------------------CCCTTCCCCEEEEETSCEEEEECTTTCCEEE
T ss_pred --ccCccc----------------------------------cCCccccceEEEECCCCEEEEEECCCCcEEE
Confidence 111111 222 1467778899999999999887643
No 224
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.16 E-value=5.4e-09 Score=112.41 Aligned_cols=77 Identities=8% Similarity=0.078 Sum_probs=62.9
Q ss_pred EEEEcCCCCEEEEEe----------CCCeEEEEeCCCCceeEEeecC-------CcCeeEEEEcCCCCEEEEEeC--CCe
Q 005277 426 SASFSPLGDFILSSS----------ADTTIRLWSTKLNANLVCYKGH-------NYPVWDVQFNPQGHYFASSSH--DRT 486 (704)
Q Consensus 426 ~l~~sp~~~~l~s~s----------~Dg~I~lwd~~~~~~~~~~~~h-------~~~V~~v~~sp~~~~l~sgs~--dg~ 486 (704)
.+.++||+++|+++. .++.|.++|..+.+.+..+.-. ......+.|+|+|++++++.. ++.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 899999999888775 4678999999999988776521 234568999999999999874 588
Q ss_pred EEEEECCCCceeEEec
Q 005277 487 ARIWSMDRIQPLRIMA 502 (704)
Q Consensus 487 i~lwd~~~~~~~~~~~ 502 (704)
|.+.|+.+.+.+..+.
T Consensus 202 VsVID~~t~kvv~~I~ 217 (426)
T 3c75_H 202 VGVVDLEGKTFDRMLD 217 (426)
T ss_dssp EEEEETTTTEEEEEEE
T ss_pred EEEEECCCCeEEEEEE
Confidence 9999999988776665
No 225
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.12 E-value=2.5e-11 Score=129.43 Aligned_cols=188 Identities=12% Similarity=0.005 Sum_probs=107.3
Q ss_pred CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeC
Q 005277 362 DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSA 441 (704)
Q Consensus 362 dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~ 441 (704)
++..+++|+.||.|..||..+.... ..+.. +++.+..+..++..+++++.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~----------------------------W~~~~--~~~~s~p~~~~g~~~v~~s~ 57 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIK----------------------------WTLKE--DPVLQVPTHVEEPAFLPDPN 57 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEE----------------------------EEEEC--CCSCCCC-----CCEEECTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEE----------------------------EEecC--CCceecceEcCCCEEEEeCC
Confidence 5778999999999999998763221 11111 33444445566777888889
Q ss_pred CCeEEEEeCCCCceeEEeecCCcC-eeE-EEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCE
Q 005277 442 DTTIRLWSTKLNANLVCYKGHNYP-VWD-VQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNY 519 (704)
Q Consensus 442 Dg~I~lwd~~~~~~~~~~~~h~~~-V~~-v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~ 519 (704)
||.|+.||..+++.+..+..+... +.+ ..+. .+..+++|+.++.++.||..+++.+..+..+. ...++|++..
T Consensus 58 dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~ 132 (369)
T 2hz6_A 58 DGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSL 132 (369)
T ss_dssp TCCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC--------------------------
T ss_pred CCEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCE
Confidence 999999999999887766543211 110 0111 34567888889999999999998887776543 2345678889
Q ss_pred EEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCC---CEEEEEeCCCeEEEEeCCCCeeeeeec
Q 005277 520 IATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG---RYMASGDEDGTIMMWDLASGRCVTPLM 586 (704)
Q Consensus 520 l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg---~~l~sg~~dg~I~iwdl~~~~~~~~~~ 586 (704)
+++++.++.|+.||.++|+.+..+..+. ....++++++ ..+++++.||.|..||..+|+.+....
T Consensus 133 v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 133 LYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred EEEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 9999999999999999998776654221 1223333332 567788999999999999998877665
No 226
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.07 E-value=1.4e-08 Score=117.17 Aligned_cols=186 Identities=12% Similarity=0.072 Sum_probs=127.8
Q ss_pred CCCeEEEEeCCCCceeEEeecCC------------------------------cCe-eEEEEcCCCCEEEEEeCCCe---
Q 005277 441 ADTTIRLWSTKLNANLVCYKGHN------------------------------YPV-WDVQFNPQGHYFASSSHDRT--- 486 (704)
Q Consensus 441 ~Dg~I~lwd~~~~~~~~~~~~h~------------------------------~~V-~~v~~sp~~~~l~sgs~dg~--- 486 (704)
.+|.|+.||..+++.+..+.... ..+ ..++++|++..++.++.++.
T Consensus 181 ~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~ 260 (689)
T 1yiq_A 181 VRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWD 260 (689)
T ss_dssp CBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred CCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccc
Confidence 37899999999999987765210 011 25788898889999887764
Q ss_pred ----------------EEEEECCCCceeEEecc--CC-------CCeeEEEEcCCCC---EEEEEECCCcEEEEeCCCCc
Q 005277 487 ----------------ARIWSMDRIQPLRIMAG--HL-------SDVDCVRWHINCN---YIATGSSDKTVRLWDVSSGE 538 (704)
Q Consensus 487 ----------------i~lwd~~~~~~~~~~~~--~~-------~~V~~v~~~p~~~---~l~tgs~dg~I~iwd~~~~~ 538 (704)
|..||.++++.+..+.. |. ..+.......+|. .++.++.+|.++++|..+|+
T Consensus 261 ~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 340 (689)
T 1yiq_A 261 PKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGE 340 (689)
T ss_dssp HHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred cCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCC
Confidence 99999999999887764 21 1122222223554 78899999999999999999
Q ss_pred EEEEeecCC----------------------------C-----------CEEEEEEecCCCEEEEEeC------------
Q 005277 539 CVRIFIGHR----------------------------S-----------MILSLAMSPDGRYMASGDE------------ 567 (704)
Q Consensus 539 ~~~~~~~h~----------------------------~-----------~i~~l~~spdg~~l~sg~~------------ 567 (704)
.+....... . ....++++|+...++++..
T Consensus 341 ~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~ 420 (689)
T 1yiq_A 341 LLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEA 420 (689)
T ss_dssp EEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSC
T ss_pred EeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccc
Confidence 874332110 0 0113788998888877643
Q ss_pred ---------------------------------CCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehcccccccccccc
Q 005277 568 ---------------------------------DGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKV 614 (704)
Q Consensus 568 ---------------------------------dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~ 614 (704)
+|.|..||+.+++.+-.+..+.. +..-.+
T Consensus 421 ~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~-~~~g~~----------------- 482 (689)
T 1yiq_A 421 PKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI-FNGGTL----------------- 482 (689)
T ss_dssp CCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS-CCCCEE-----------------
T ss_pred ccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC-ccCccc-----------------
Confidence 36677777777776655543321 111112
Q ss_pred ccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccccc
Q 005277 615 STGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKT 661 (704)
Q Consensus 615 ~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~ 661 (704)
+..+.++++|+.||.|+.||..+++.+.+.
T Consensus 483 -----------------~tagglvf~gt~dg~l~a~D~~tG~~lw~~ 512 (689)
T 1yiq_A 483 -----------------STAGNLVFEGSADGRVIAYAADTGEKLWEQ 512 (689)
T ss_dssp -----------------EETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred -----------------eECCCEEEEECCCCcEEEEECCCCccceee
Confidence 456779999999999999999999876543
No 227
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.04 E-value=1.9e-08 Score=115.74 Aligned_cols=241 Identities=12% Similarity=0.062 Sum_probs=156.7
Q ss_pred CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeC
Q 005277 362 DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSA 441 (704)
Q Consensus 362 dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~ 441 (704)
++..|.+++.|+.|..+|..+....-........ .. .......++ . .+..++.++.
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~---------------~~---~~~~~~~p~----v--~~~~v~v~~~ 182 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQ---------------KG---SLTITGAPR----V--FKGKVIIGNG 182 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTC---------------CS---SCBCCSCCE----E--ETTEEEECCB
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCc---------------Cc---CcccccCcE----E--ECCEEEEEec
Confidence 3567888888999999998764332211100000 00 000011121 1 1344554443
Q ss_pred ------CCeEEEEeCCCCceeEEeecCCcC--------------------------------eeEEEEcCCCCEEEEEeC
Q 005277 442 ------DTTIRLWSTKLNANLVCYKGHNYP--------------------------------VWDVQFNPQGHYFASSSH 483 (704)
Q Consensus 442 ------Dg~I~lwd~~~~~~~~~~~~h~~~--------------------------------V~~v~~sp~~~~l~sgs~ 483 (704)
+|.|+.||..+++.+..+...... ...++++|++..++.++.
T Consensus 183 ~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~ 262 (677)
T 1kb0_A 183 GAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTG 262 (677)
T ss_dssp CTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECC
T ss_pred ccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECC
Confidence 799999999999998877643211 125788898888888876
Q ss_pred CC-------------------eEEEEECCCCceeEEecc--CC-------CCeeEEEEcCCC---CEEEEEECCCcEEEE
Q 005277 484 DR-------------------TARIWSMDRIQPLRIMAG--HL-------SDVDCVRWHINC---NYIATGSSDKTVRLW 532 (704)
Q Consensus 484 dg-------------------~i~lwd~~~~~~~~~~~~--~~-------~~V~~v~~~p~~---~~l~tgs~dg~I~iw 532 (704)
++ .|..+|.++++.+..+.. |. .....+....+| ..+++++.+|.++++
T Consensus 263 ~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~l 342 (677)
T 1kb0_A 263 NGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVL 342 (677)
T ss_dssp CEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEE
T ss_pred CCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEE
Confidence 64 599999999998877663 21 112223333467 688999999999999
Q ss_pred eCCCCcEEEEeecCC-----------CCE------------------------EEEEEecCCCEEEEEeCC---------
Q 005277 533 DVSSGECVRIFIGHR-----------SMI------------------------LSLAMSPDGRYMASGDED--------- 568 (704)
Q Consensus 533 d~~~~~~~~~~~~h~-----------~~i------------------------~~l~~spdg~~l~sg~~d--------- 568 (704)
|..+|+.+..+.... .++ ..++++|++.++++...+
T Consensus 343 D~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~ 422 (677)
T 1kb0_A 343 DRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDK 422 (677)
T ss_dssp ETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECT
T ss_pred ECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccc
Confidence 999999887654221 011 156889998888776432
Q ss_pred ----------------------------------CeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehcccccccccccc
Q 005277 569 ----------------------------------GTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKV 614 (704)
Q Consensus 569 ----------------------------------g~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~ 614 (704)
|.|..||+.+++.+-.+.. ..+++...+
T Consensus 423 ~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-~~~~~~g~~----------------- 484 (677)
T 1kb0_A 423 KWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH-VSPWNGGTL----------------- 484 (677)
T ss_dssp TCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE-SSSCCCCEE-----------------
T ss_pred ccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC-CCCCcCcce-----------------
Confidence 6788888888877665542 222222222
Q ss_pred ccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccccc
Q 005277 615 STGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKT 661 (704)
Q Consensus 615 ~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~ 661 (704)
...+.+++.|+.||.+++||..+++.+..+
T Consensus 485 -----------------~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~ 514 (677)
T 1kb0_A 485 -----------------TTAGNVVFQGTADGRLVAYHAATGEKLWEA 514 (677)
T ss_dssp -----------------EETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred -----------------EeCCCEEEEECCCCcEEEEECCCCceeeee
Confidence 556778899999999999999999876544
No 228
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.00 E-value=4.7e-08 Score=104.05 Aligned_cols=151 Identities=14% Similarity=0.184 Sum_probs=108.7
Q ss_pred EEc--CCCCEEE-EEeCCCeEEEEeCCCC----ceeEEee------c-CCcCeeEEEEcCCCCEEEEEeCC------CeE
Q 005277 428 SFS--PLGDFIL-SSSADTTIRLWSTKLN----ANLVCYK------G-HNYPVWDVQFNPQGHYFASSSHD------RTA 487 (704)
Q Consensus 428 ~~s--p~~~~l~-s~s~Dg~I~lwd~~~~----~~~~~~~------~-h~~~V~~v~~sp~~~~l~sgs~d------g~i 487 (704)
.++ +++++|+ ++..+++|.++|+.+. +...++. . ....-..+..+|+| .++++..+ |.+
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 446 7788776 5667788999999755 4455552 0 11234567889999 77776655 789
Q ss_pred EEEECCCCceeEEeccCCCC---eeEEEEcCCCCEEEEEE-------------------CCCcEEEEeCCCCcEEEEeec
Q 005277 488 RIWSMDRIQPLRIMAGHLSD---VDCVRWHINCNYIATGS-------------------SDKTVRLWDVSSGECVRIFIG 545 (704)
Q Consensus 488 ~lwd~~~~~~~~~~~~~~~~---V~~v~~~p~~~~l~tgs-------------------~dg~I~iwd~~~~~~~~~~~~ 545 (704)
.++|.++.+.+..+.....+ -..+.|+|+++.+++.. ...+|.+||+.+++.+..+..
T Consensus 167 ~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v 246 (462)
T 2ece_A 167 LMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL 246 (462)
T ss_dssp EEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEES
T ss_pred EEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEec
Confidence 99999999998888632222 23478899999888874 368999999999988877764
Q ss_pred C-C-CCEEEEEE--ecCCCEEEEEe------CCCeEEEEeCCCC
Q 005277 546 H-R-SMILSLAM--SPDGRYMASGD------EDGTIMMWDLASG 579 (704)
Q Consensus 546 h-~-~~i~~l~~--spdg~~l~sg~------~dg~I~iwdl~~~ 579 (704)
. . .....+.| +|+|+++++++ .+++|.+|....+
T Consensus 247 g~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g 290 (462)
T 2ece_A 247 GEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDG 290 (462)
T ss_dssp CTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETT
T ss_pred CCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCC
Confidence 2 1 23455656 99999988877 4668888776544
No 229
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.99 E-value=2.7e-08 Score=103.34 Aligned_cols=209 Identities=13% Similarity=0.045 Sum_probs=144.2
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEE
Q 005277 433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR 512 (704)
Q Consensus 433 ~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~ 512 (704)
+..|+.++.++.|..+|.. ++....+..+...+.++...+++. ++.++.++.+..||.. ++....+......+.++.
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~ 183 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAAS 183 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCE
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeE
Confidence 5567788889999999998 777777766666677777877776 6667788999999998 777766665566777888
Q ss_pred EcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCcee
Q 005277 513 WHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCV 592 (704)
Q Consensus 513 ~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V 592 (704)
..+++.+. +++ +.|..|| .+++....+......+.++...++|. |..++.++.|..+| .+++.+..+......+
T Consensus 184 ~d~~g~l~-v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~-~~g~~~~~~~~~~~~~ 257 (330)
T 3hxj_A 184 IGKDGTIY-FGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAIN-PDGTEKWRFKTGKRIE 257 (330)
T ss_dssp ECTTCCEE-EES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEEC-TTSCEEEEEECSSCCC
T ss_pred EcCCCEEE-EEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEEC-CCCCEeEEeeCCCCcc
Confidence 87777644 444 8899999 78887777766666788888988875 55566778888888 4565555544333222
Q ss_pred eeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCcccccc
Q 005277 593 WTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRS 672 (704)
Q Consensus 593 ~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~ 672 (704)
.++.. .+++ .|..|+.+|.|..+|. ++....
T Consensus 258 ~~~~~----------------------------------~~~g-~l~v~t~~ggl~~~d~-~g~~~~------------- 288 (330)
T 3hxj_A 258 SSPVI----------------------------------GNTD-TIYFGSYDGHLYAINP-DGTEKW------------- 288 (330)
T ss_dssp SCCEE----------------------------------CTTS-CEEEECTTCEEEEECT-TSCEEE-------------
T ss_pred ccceE----------------------------------cCCC-eEEEecCCCCEEEECC-CCcEEE-------------
Confidence 22222 4344 5667788888999985 443321
Q ss_pred ccccCCCCcCeEEEEEccCCcEEEEeecCC
Q 005277 673 LKTLPTKSTPVYSLQFSRRNLLFAAGALSK 702 (704)
Q Consensus 673 l~~~~~~~~~V~~l~fs~~g~~La~gs~dg 702 (704)
.+......+.++...++|.+.+ |+.+|
T Consensus 289 --~~~~~~~~~~~~~~d~~g~l~~-gt~~G 315 (330)
T 3hxj_A 289 --NFETGSWIIATPVIDENGTIYF-GTRNG 315 (330)
T ss_dssp --EEECSSCCCSCCEECTTCCEEE-ECTTS
T ss_pred --EEEcCCccccceEEcCCCEEEE-EcCCC
Confidence 1112234566677777887555 55554
No 230
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.98 E-value=7.5e-07 Score=89.77 Aligned_cols=158 Identities=9% Similarity=-0.003 Sum_probs=106.1
Q ss_pred cCeEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCE-EEEEeCCCeEEEEECCCCceeE
Q 005277 422 GPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY-FASSSHDRTARIWSMDRIQPLR 499 (704)
Q Consensus 422 ~~V~~l~~sp~~~~l~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~-l~sgs~dg~i~lwd~~~~~~~~ 499 (704)
..+.+++|++++..|+ +...++.|..++.........+.........++++|++.. +++....+.|.+++++......
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~ 115 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV 115 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence 4578999999776665 4556789999999865543333333346789999996554 4455567899999997644333
Q ss_pred EeccCCCCeeEEEEcCCCCEEEEEEC---CCcEEEEeCCCCcEEEEe-ecCCCCEEEEEEecCCCEEEEE-eCCCeEEEE
Q 005277 500 IMAGHLSDVDCVRWHINCNYIATGSS---DKTVRLWDVSSGECVRIF-IGHRSMILSLAMSPDGRYMASG-DEDGTIMMW 574 (704)
Q Consensus 500 ~~~~~~~~V~~v~~~p~~~~l~tgs~---dg~I~iwd~~~~~~~~~~-~~h~~~i~~l~~spdg~~l~sg-~~dg~I~iw 574 (704)
...........++++|++..|+.+.. .+.|..+++.... ...+ ...-.....++++|++..|+.+ ...+.|.++
T Consensus 116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~ 194 (267)
T 1npe_A 116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECL 194 (267)
T ss_dssp EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEE
Confidence 33323356789999997666665554 3688888875432 2322 2333467899999987766554 456799999
Q ss_pred eCCCCe
Q 005277 575 DLASGR 580 (704)
Q Consensus 575 dl~~~~ 580 (704)
|+....
T Consensus 195 ~~~g~~ 200 (267)
T 1npe_A 195 NPAQPG 200 (267)
T ss_dssp ETTEEE
T ss_pred ecCCCc
Confidence 987543
No 231
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.98 E-value=2.2e-08 Score=105.83 Aligned_cols=194 Identities=7% Similarity=-0.044 Sum_probs=127.0
Q ss_pred EEEEcCCCCEEEEEe----------CCCeEEEEeCCCCceeEEeecC-------CcCeeEEEEcCCCCEEEEEeC--CCe
Q 005277 426 SASFSPLGDFILSSS----------ADTTIRLWSTKLNANLVCYKGH-------NYPVWDVQFNPQGHYFASSSH--DRT 486 (704)
Q Consensus 426 ~l~~sp~~~~l~s~s----------~Dg~I~lwd~~~~~~~~~~~~h-------~~~V~~v~~sp~~~~l~sgs~--dg~ 486 (704)
.+.++||+++++++. .+++|.+||+.+++.+..+... ......+.++|+|++++++.. +..
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~ 148 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence 799999999988876 3789999999999999888643 123568999999999998874 467
Q ss_pred EEE--EECCCCceeEEecc-C-----------------CCCeeEEEE--------------------------cCCCCEE
Q 005277 487 ARI--WSMDRIQPLRIMAG-H-----------------LSDVDCVRW--------------------------HINCNYI 520 (704)
Q Consensus 487 i~l--wd~~~~~~~~~~~~-~-----------------~~~V~~v~~--------------------------~p~~~~l 520 (704)
+.+ +|+.+ +..+.. . .+.+..+.. .+++..+
T Consensus 149 v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~ 225 (368)
T 1mda_H 149 AGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGML 225 (368)
T ss_dssp EEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEE
T ss_pred EEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEE
Confidence 888 88865 222210 0 000000000 2233333
Q ss_pred EEEECCCcEEEEeCCCCc--EEEEeec-------CC---CCEEEEEEecCCCEEEEEeC---------CCeEEEEeCCCC
Q 005277 521 ATGSSDKTVRLWDVSSGE--CVRIFIG-------HR---SMILSLAMSPDGRYMASGDE---------DGTIMMWDLASG 579 (704)
Q Consensus 521 ~tgs~dg~I~iwd~~~~~--~~~~~~~-------h~---~~i~~l~~spdg~~l~sg~~---------dg~I~iwdl~~~ 579 (704)
+..+. +.|.+.|+.++. .+..+.- +. .....++++|+|+.++++.. ++.+.++|+.++
T Consensus 226 ~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~ 304 (368)
T 1mda_H 226 VWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG 304 (368)
T ss_dssp EECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC
T ss_pred EEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCC
Confidence 33334 666677765432 1111110 00 11122689999998887543 235669999999
Q ss_pred eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCC-EEEEEe-CCCcEEEEeCCCCcc
Q 005277 580 RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGS-LLASGS-ADCTVKLWDVTTSTK 657 (704)
Q Consensus 580 ~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~lasgs-~Dg~V~iWd~~~~~~ 657 (704)
+.+..+.... ..+.+.+ +++|+ ++++.. .++.|.++|+.+.+.
T Consensus 305 ~vv~~i~vg~-~p~gi~~----------------------------------s~Dg~~l~va~~~~~~~VsVID~~t~kv 349 (368)
T 1mda_H 305 QTSGPISNGH-DSDAIIA----------------------------------AQDGASDNYANSAGTEVLDIYDAASDQD 349 (368)
T ss_dssp CEEECCEEEE-EECEEEE----------------------------------CCSSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred eEEEEEECCC-CcceEEE----------------------------------CCCCCEEEEEccCCCCeEEEEECCCCcE
Confidence 9988886433 5677777 99997 566666 599999999999765
Q ss_pred c
Q 005277 658 V 658 (704)
Q Consensus 658 ~ 658 (704)
+
T Consensus 350 v 350 (368)
T 1mda_H 350 Q 350 (368)
T ss_dssp E
T ss_pred E
Confidence 4
No 232
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.97 E-value=1e-08 Score=107.92 Aligned_cols=211 Identities=9% Similarity=0.009 Sum_probs=134.5
Q ss_pred CCCCEEEEEEcCCCCEEEEEeC-----CCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCe
Q 005277 350 THNGLNCASISQDGSLVAGGFS-----DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (704)
Q Consensus 350 ~~~~V~~~~fs~dg~~lasg~~-----dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 424 (704)
+-..+.+++|+++|+++++-.. ++.|.+||+.+.......... .....+...+
T Consensus 65 ~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~----------------------~~~~~~~~~~ 122 (343)
T 2qe8_A 65 TFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLP----------------------PPITLSNSFV 122 (343)
T ss_dssp CCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECC----------------------TTTSCTTCCC
T ss_pred ceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECC----------------------hhhccccccc
Confidence 4457999999999987776544 578999998753211110000 0001233456
Q ss_pred EEEEEcCCCCEE-EEEe---CCCeEEEEeCCCCceeEEeecCCcCee-EEEEcCCCCEEEEEeCCCeEEEEECCCCceeE
Q 005277 425 YSASFSPLGDFI-LSSS---ADTTIRLWSTKLNANLVCYKGHNYPVW-DVQFNPQGHYFASSSHDRTARIWSMDRIQPLR 499 (704)
Q Consensus 425 ~~l~~sp~~~~l-~s~s---~Dg~I~lwd~~~~~~~~~~~~h~~~V~-~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~ 499 (704)
..+++++++..+ ++.+ .++.|.+||+.+++....+.+|..... ...+.++|..|.+.+.++.+..|.
T Consensus 123 ~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~-------- 194 (343)
T 2qe8_A 123 NDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH-------- 194 (343)
T ss_dssp CEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC--------
T ss_pred ceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceecee--------
Confidence 889999865554 4544 678999999998877666655432111 134455777787788888876653
Q ss_pred EeccCCCCeeEEEEcCCCCEEEEEECCC-cEEEEeCC---CCc--------EEEEeecCCCCEEEEEEecCCCEEEEEeC
Q 005277 500 IMAGHLSDVDCVRWHINCNYIATGSSDK-TVRLWDVS---SGE--------CVRIFIGHRSMILSLAMSPDGRYMASGDE 567 (704)
Q Consensus 500 ~~~~~~~~V~~v~~~p~~~~l~tgs~dg-~I~iwd~~---~~~--------~~~~~~~h~~~i~~l~~spdg~~l~sg~~ 567 (704)
..+..++|+|+++.|+++...+ .+..++.. .+. .+. ..++.+....++++++|+++++...
T Consensus 195 ------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~g~~g~pdgia~d~~G~l~va~~~ 267 (343)
T 2qe8_A 195 ------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIE-RYSEKPICDGISIDKDHNIYVGDLA 267 (343)
T ss_dssp ------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCE-EEEECCSCSCEEECTTCCEEEEEGG
T ss_pred ------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceE-ecccCCCCceEEECCCCCEEEEccC
Confidence 2367899999999998887766 44444421 111 011 1134445667999999999999989
Q ss_pred CCeEEEEeCCCCeeeeeecC-CCceeeeeee
Q 005277 568 DGTIMMWDLASGRCVTPLMG-HTSCVWTLAY 597 (704)
Q Consensus 568 dg~I~iwdl~~~~~~~~~~~-h~~~V~sl~~ 597 (704)
++.|.+||..+++....... +.....++++
T Consensus 268 ~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~ 298 (343)
T 2qe8_A 268 HSAIGVITSADRAYKLLVTDEKLSWTDSFNF 298 (343)
T ss_dssp GTEEEEEETTTTEEEEEEECGGGSCEEEEEE
T ss_pred CCeEEEEECCCCCEEEEEECCceecCCeeEE
Confidence 99999999856654322221 1234556666
No 233
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.92 E-value=1.9e-07 Score=99.39 Aligned_cols=194 Identities=11% Similarity=0.136 Sum_probs=131.2
Q ss_pred EEc--CCCCEEEE-EeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeec--------cCCccCeEE
Q 005277 358 SIS--QDGSLVAG-GFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY--------QGHSGPVYS 426 (704)
Q Consensus 358 ~fs--~dg~~las-g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~h~~~V~~ 426 (704)
.++ +++++|.+ |..++.|.|+|+.+..... +..... .+- ..-..
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p------------------------~~~k~ie~~~~~~~~g~-s~Ph~ 142 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREP------------------------KIIKVIEPEEVKKVSGY-SRLHT 142 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSC------------------------EEEEEECHHHHHHHHCE-EEEEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCc------------------------eeeeeechhhcccccCC-Ccccc
Confidence 446 77776655 5568889999986422111 111111 011 12345
Q ss_pred EEEcCCCCEEEEEeCC------CeEEEEeCCCCceeEEeecCCc---CeeEEEEcCCCCEEEEEe---------------
Q 005277 427 ASFSPLGDFILSSSAD------TTIRLWSTKLNANLVCYKGHNY---PVWDVQFNPQGHYFASSS--------------- 482 (704)
Q Consensus 427 l~~sp~~~~l~s~s~D------g~I~lwd~~~~~~~~~~~~h~~---~V~~v~~sp~~~~l~sgs--------------- 482 (704)
+..+|+| .++++..+ |.|.++|..+++.+..+..... --.++.|+|+++.+++..
T Consensus 143 ~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~ 221 (462)
T 2ece_A 143 VHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEH 221 (462)
T ss_dssp EEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTT
T ss_pred eeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhh
Confidence 6788999 77766655 7899999999999888863222 234688999999888885
Q ss_pred ----CCCeEEEEECCCCceeEEeccC-C-CCeeEEEE--cCCCCEEEEEE------CCCcEEEEeCCCCcE--EEEe--e
Q 005277 483 ----HDRTARIWSMDRIQPLRIMAGH-L-SDVDCVRW--HINCNYIATGS------SDKTVRLWDVSSGEC--VRIF--I 544 (704)
Q Consensus 483 ----~dg~i~lwd~~~~~~~~~~~~~-~-~~V~~v~~--~p~~~~l~tgs------~dg~I~iwd~~~~~~--~~~~--~ 544 (704)
.+.+|.+||+.+++.+..+... . .....+.| +|+++++++++ .+++|.+|....|.. ...+ .
T Consensus 222 ~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~ 301 (462)
T 2ece_A 222 LKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIP 301 (462)
T ss_dssp HHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEEC
T ss_pred hhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCC
Confidence 3689999999988777776642 1 23445656 99999998877 456888776654431 1111 1
Q ss_pred cC----------------CCCEEEEEEecCCCEEEEEe-CCCeEEEEeCC
Q 005277 545 GH----------------RSMILSLAMSPDGRYMASGD-EDGTIMMWDLA 577 (704)
Q Consensus 545 ~h----------------~~~i~~l~~spdg~~l~sg~-~dg~I~iwdl~ 577 (704)
.. ......|.+||||++|+++. ..+.|.+||+.
T Consensus 302 ~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 302 AEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp CEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred CccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 00 24578899999999988766 46899999986
No 234
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.90 E-value=2.3e-07 Score=99.76 Aligned_cols=186 Identities=13% Similarity=0.052 Sum_probs=133.3
Q ss_pred CCCCEEEEEeC-C----CeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEe----------CCCeEEEEECCCC
Q 005277 431 PLGDFILSSSA-D----TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS----------HDRTARIWSMDRI 495 (704)
Q Consensus 431 p~~~~l~s~s~-D----g~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs----------~dg~i~lwd~~~~ 495 (704)
++++.++++.. + ++|.++|..+++.+..+..-..+ .+.++|+|++++++. .++.|.++|..+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 45565555544 2 69999999999999988866666 899999999888876 4679999999999
Q ss_pred ceeEEeccC-------CCCeeEEEEcCCCCEEEEEEC--CCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCC-CEEEEE
Q 005277 496 QPLRIMAGH-------LSDVDCVRWHINCNYIATGSS--DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG-RYMASG 565 (704)
Q Consensus 496 ~~~~~~~~~-------~~~V~~v~~~p~~~~l~tgs~--dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg-~~l~sg 565 (704)
+.+..+.-. ......+.|+|+|++++++.. ++.|.+.|+.+++.+..+.... +....|+| +.+++.
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g----~~~~~p~g~~~~v~~ 235 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD----CYHIFPASPTVFYMN 235 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEEETTEEEEE
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC----ceeeccCCCcEEEEE
Confidence 888776421 234567899999999999874 5789999999999988876422 13344543 566677
Q ss_pred eCCCeEEEEeCCCCeeeeee----cCCCceee-eeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEE
Q 005277 566 DEDGTIMMWDLASGRCVTPL----MGHTSCVW-TLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLAS 640 (704)
Q Consensus 566 ~~dg~I~iwdl~~~~~~~~~----~~h~~~V~-sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~las 640 (704)
+.||.+.+.++.+++..... .....++. .+.+ ++++..++.
T Consensus 236 ~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~----------------------------------~~dg~~~~~ 281 (426)
T 3c75_H 236 CRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAF----------------------------------SLRSGRLVW 281 (426)
T ss_dssp ETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEE----------------------------------CTTTCEEEE
T ss_pred cCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeee----------------------------------cCCCCEEEE
Confidence 78888888888666544221 11111111 1122 777777777
Q ss_pred EeCCCcEEEEeCCCCc
Q 005277 641 GSADCTVKLWDVTTST 656 (704)
Q Consensus 641 gs~Dg~V~iWd~~~~~ 656 (704)
.+..|.|.+.|+....
T Consensus 282 ~s~~g~V~ViD~~~~~ 297 (426)
T 3c75_H 282 PTYTGKIFQADLTAEG 297 (426)
T ss_dssp EBTTSEEEEEEECSSC
T ss_pred EeCCCcEEEEeccCCc
Confidence 7778999999987644
No 235
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.87 E-value=1.8e-06 Score=91.66 Aligned_cols=224 Identities=12% Similarity=0.016 Sum_probs=145.9
Q ss_pred CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccC--CccCeEEEEEcCCCCEEEEE
Q 005277 362 DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG--HSGPVYSASFSPLGDFILSS 439 (704)
Q Consensus 362 dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~V~~l~~sp~~~~l~s~ 439 (704)
++..+.+++.++.|..+|..+....-.. ...+ ...++ .. +..++.+
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~--------------------------~~~~~~~~~p~----~~--~~~v~v~ 149 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQT--------------------------KVAGEALSRPV----VS--DGLVLIH 149 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEE--------------------------ECSSCCCSCCE----EE--TTEEEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEE--------------------------eCCCceEcCCE----EE--CCEEEEE
Confidence 4557778888999999998753221110 0000 11121 11 4578888
Q ss_pred eCCCeEEEEeCCCCceeEEeecCCcCe-----eEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCC----ee-
Q 005277 440 SADTTIRLWSTKLNANLVCYKGHNYPV-----WDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD----VD- 509 (704)
Q Consensus 440 s~Dg~I~lwd~~~~~~~~~~~~h~~~V-----~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~----V~- 509 (704)
+.++.|..+|..+++.+..+....... ..... .+..+++++.++.+..+|..+++.+......... +.
T Consensus 150 ~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~ 227 (376)
T 3q7m_A 150 TSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDR 227 (376)
T ss_dssp CTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC---------
T ss_pred cCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCccccc
Confidence 899999999999999888776432211 11122 2456788888999999999999887766532110 00
Q ss_pred --EEEEcC--CCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeee
Q 005277 510 --CVRWHI--NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL 585 (704)
Q Consensus 510 --~v~~~p--~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~ 585 (704)
.+...| .+..+++++.++.+..+|..+|+.+..... .....+.. ++..+++++.+|.|..+|..+++.+...
T Consensus 228 ~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~ 303 (376)
T 3q7m_A 228 LSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQ 303 (376)
T ss_dssp --CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEE
T ss_pred ccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEee
Confidence 010111 356788888899999999999998876542 33444444 4667888889999999999999877655
Q ss_pred cCCC-ceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccc
Q 005277 586 MGHT-SCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVL 659 (704)
Q Consensus 586 ~~h~-~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~ 659 (704)
.... ..+.... ..+..|+.++.+|.|+++|..+++...
T Consensus 304 ~~~~~~~~~~~~------------------------------------~~~~~l~v~~~~g~l~~~d~~tG~~~~ 342 (376)
T 3q7m_A 304 SDLLHRLLTSPV------------------------------------LYNGNLVVGDSEGYLHWINVEDGRFVA 342 (376)
T ss_dssp CTTTTSCCCCCE------------------------------------EETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred cccCCCcccCCE------------------------------------EECCEEEEEeCCCeEEEEECCCCcEEE
Confidence 4211 1111111 134688889999999999999987643
No 236
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.85 E-value=5.8e-08 Score=106.90 Aligned_cols=227 Identities=12% Similarity=0.075 Sum_probs=150.5
Q ss_pred CCCCEEEEEe-CCCeEEEEeCCCCceeEEeec-CCcCeeEEEE-c-CCCCEEEEEe------------------CCCeEE
Q 005277 431 PLGDFILSSS-ADTTIRLWSTKLNANLVCYKG-HNYPVWDVQF-N-PQGHYFASSS------------------HDRTAR 488 (704)
Q Consensus 431 p~~~~l~s~s-~Dg~I~lwd~~~~~~~~~~~~-h~~~V~~v~~-s-p~~~~l~sgs------------------~dg~i~ 488 (704)
+||++++.+. .++.|.+.|+.+.++...+.- .......+++ + |++.++++++ .++.+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 3788877654 456799999999998875542 2345778888 5 8999998885 346899
Q ss_pred EEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCC--------------------------------------cEE
Q 005277 489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDK--------------------------------------TVR 530 (704)
Q Consensus 489 lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg--------------------------------------~I~ 530 (704)
++|.++.+....+.-.. ....++++|+|+++++.+.+. .|.
T Consensus 179 vID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 99999988877766333 457788999999999988553 477
Q ss_pred EEeCCC--CcE-EEEeecCCCCEEEEEEecCCCEEEEEe-CCCeEEEEeCCCCe------------eeeeecCCCceeee
Q 005277 531 LWDVSS--GEC-VRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLASGR------------CVTPLMGHTSCVWT 594 (704)
Q Consensus 531 iwd~~~--~~~-~~~~~~h~~~i~~l~~spdg~~l~sg~-~dg~I~iwdl~~~~------------~~~~~~~h~~~V~s 594 (704)
+.|.++ ++. +..+.. .....++.++|||+++++++ .+.+|.++|+.+.+ .+..... ......
T Consensus 258 VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v-G~gP~h 335 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL-GLGPLH 335 (595)
T ss_dssp EEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC-CSCEEE
T ss_pred EEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC-CCCcce
Confidence 778777 544 444432 23457899999999877655 67899999998653 1222221 123344
Q ss_pred eeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCcccccccc
Q 005277 595 LAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLK 674 (704)
Q Consensus 595 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~ 674 (704)
++| +++|...++.-.|+.|.+||+........ +......+.
T Consensus 336 ~aF----------------------------------~~dG~aY~t~~ldsqV~kwdi~~a~~~~~-----g~~~~~vi~ 376 (595)
T 1fwx_A 336 TAF----------------------------------DGRGNAYTSLFLDSQVVKWNIEDAIRAYA-----GEKVDPIKD 376 (595)
T ss_dssp EEE----------------------------------CTTSEEEEEETTTTEEEEEEHHHHHHHHH-----TCSCCCEEE
T ss_pred EEE----------------------------------CCCCeEEEEEecCCcEEEEEhhHhhhhhc-----ccccceeEE
Confidence 555 99995456667899999999876221000 000012233
Q ss_pred ccCCCCcCe-----EEEEEccCCcEEEEee
Q 005277 675 TLPTKSTPV-----YSLQFSRRNLLFAAGA 699 (704)
Q Consensus 675 ~~~~~~~~V-----~~l~fs~~g~~La~gs 699 (704)
.++.+-.|- ..+.++|||++|+++.
T Consensus 377 kidV~yqpGh~~~~~g~t~~~DGk~l~~~N 406 (595)
T 1fwx_A 377 KLDVHYQPGHLKTVMGETLDATNDWLVCLS 406 (595)
T ss_dssp EEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred EeecccccccceeccceEeCCCCCEEEEcC
Confidence 343333321 2234578999888764
No 237
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.84 E-value=1.9e-07 Score=107.66 Aligned_cols=152 Identities=11% Similarity=0.143 Sum_probs=108.1
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEeecC--CcCeeEEEEcC---CCCEEEEEe------CCCeEEEEECCCCceeEEe
Q 005277 433 GDFILSSSADTTIRLWSTKLNANLVCYKGH--NYPVWDVQFNP---QGHYFASSS------HDRTARIWSMDRIQPLRIM 501 (704)
Q Consensus 433 ~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h--~~~V~~v~~sp---~~~~l~sgs------~dg~i~lwd~~~~~~~~~~ 501 (704)
+..++.++.|+.|..+|..+++.+..+... ......+..+| ++. +++++ .+|.|+.||.++++.+..+
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 199 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRF 199 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence 567888999999999999999998877642 11111222222 444 44443 3789999999999988776
Q ss_pred ccCC-------------------------------CCeeEEEEcCCCCEEEEEECCCc-------------------EEE
Q 005277 502 AGHL-------------------------------SDVDCVRWHINCNYIATGSSDKT-------------------VRL 531 (704)
Q Consensus 502 ~~~~-------------------------------~~V~~v~~~p~~~~l~tgs~dg~-------------------I~i 531 (704)
.... .....+++.|+...+++++.++. |..
T Consensus 200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A 279 (689)
T 1yiq_A 200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA 279 (689)
T ss_dssp ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence 4210 11135788898899999987764 999
Q ss_pred EeCCCCcEEEEeec--CC-------CCEEEEEEecCCC---EEEEEeCCCeEEEEeCCCCeeeeee
Q 005277 532 WDVSSGECVRIFIG--HR-------SMILSLAMSPDGR---YMASGDEDGTIMMWDLASGRCVTPL 585 (704)
Q Consensus 532 wd~~~~~~~~~~~~--h~-------~~i~~l~~spdg~---~l~sg~~dg~I~iwdl~~~~~~~~~ 585 (704)
||..+|+.+..+.. |. ..+.......+|+ .++.++.+|.++++|..+|+.+...
T Consensus 280 lD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~ 345 (689)
T 1yiq_A 280 VNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAK 345 (689)
T ss_dssp EETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred EEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccc
Confidence 99999999988764 21 1222233334675 7889999999999999999988554
No 238
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.84 E-value=2e-07 Score=107.29 Aligned_cols=153 Identities=7% Similarity=0.061 Sum_probs=110.8
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEeecC-C----cCeeEEEEcCCCCEEEEEeC------CCeEEEEECCCCceeEEe
Q 005277 433 GDFILSSSADTTIRLWSTKLNANLVCYKGH-N----YPVWDVQFNPQGHYFASSSH------DRTARIWSMDRIQPLRIM 501 (704)
Q Consensus 433 ~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h-~----~~V~~v~~sp~~~~l~sgs~------dg~i~lwd~~~~~~~~~~ 501 (704)
+..|+.++.|+.|..+|..+++.+..+..+ . ..+.+--.. .+..+++++. ++.|+.||..+++.+..+
T Consensus 128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~ 206 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW 206 (677)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence 567888999999999999999999888754 2 112110001 2345555543 799999999999988776
Q ss_pred ccCCCC--------------------------------eeEEEEcCCCCEEEEEECCC-------------------cEE
Q 005277 502 AGHLSD--------------------------------VDCVRWHINCNYIATGSSDK-------------------TVR 530 (704)
Q Consensus 502 ~~~~~~--------------------------------V~~v~~~p~~~~l~tgs~dg-------------------~I~ 530 (704)
...... ...++++|++..+++++.++ +|.
T Consensus 207 ~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~ 286 (677)
T 1kb0_A 207 FSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIV 286 (677)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred ccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEE
Confidence 532211 13578889999999887664 599
Q ss_pred EEeCCCCcEEEEeec--CC-------CCEEEEEEecCC---CEEEEEeCCCeEEEEeCCCCeeeeeec
Q 005277 531 LWDVSSGECVRIFIG--HR-------SMILSLAMSPDG---RYMASGDEDGTIMMWDLASGRCVTPLM 586 (704)
Q Consensus 531 iwd~~~~~~~~~~~~--h~-------~~i~~l~~spdg---~~l~sg~~dg~I~iwdl~~~~~~~~~~ 586 (704)
.+|..+|+.+..+.. |. .....+....+| ..++.++.+|.|+++|..+|+.+..+.
T Consensus 287 AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~ 354 (677)
T 1kb0_A 287 ALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKN 354 (677)
T ss_dssp EECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred EEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEecccc
Confidence 999999999888763 21 122333444578 689999999999999999999887664
No 239
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.83 E-value=8e-07 Score=92.32 Aligned_cols=267 Identities=7% Similarity=0.030 Sum_probs=151.4
Q ss_pred CCeEEEEEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccC
Q 005277 340 PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG 419 (704)
Q Consensus 340 p~~~~~~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (704)
|....+.+.+.-....+++|+++|+++.++..++.|..|+............ ..... . ....+... .....
T Consensus 7 ~~~~~i~~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~--~~~~~----~-~~~~g~~~--~~~~~ 77 (322)
T 2fp8_A 7 PILKEILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYA--SPYWN----K-AFCENSTD--AEKRP 77 (322)
T ss_dssp ---CEEEEECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEES--CTTCC----H-HHHTTCCC--GGGHH
T ss_pred CccceeecCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecc--ccccc----c-cccccccc--hhccc
Confidence 3333344433334566788999999888898999999998654211100000 00000 0 00000000 00001
Q ss_pred CccCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEeec-----CCcCeeEEEEcC-CCCEEEEEeC---------
Q 005277 420 HSGPVYSASFSP-LGDFILSSSADTTIRLWSTKLNANLVCYKG-----HNYPVWDVQFNP-QGHYFASSSH--------- 483 (704)
Q Consensus 420 h~~~V~~l~~sp-~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~-----h~~~V~~v~~sp-~~~~l~sgs~--------- 483 (704)
..+.+.++++.+ +++ |+.+...+.|..+|..++.. ..+.. ......++++.+ +|+.+++-..
T Consensus 78 ~~~~p~gi~~~~~~g~-l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~ 155 (322)
T 2fp8_A 78 LCGRTYDISYNLQNNQ-LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQ 155 (322)
T ss_dssp HHCCEEEEEEETTTTE-EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHH
T ss_pred cCCCCceEEEcCCCCc-EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccc
Confidence 123578899998 554 55555555688888775432 22211 113467899999 9987666432
Q ss_pred --------CCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEE-ECCCcEEEEeCCCCc--EEEEeecCCCCEEE
Q 005277 484 --------DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG-SSDKTVRLWDVSSGE--CVRIFIGHRSMILS 552 (704)
Q Consensus 484 --------dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tg-s~dg~I~iwd~~~~~--~~~~~~~h~~~i~~ 552 (704)
++.|..||..+++...... .......++|+|+++.|+++ +..+.|..|++.... ....+....+ ...
T Consensus 156 ~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~g 233 (322)
T 2fp8_A 156 QIMDTSDKTGRLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGN 233 (322)
T ss_dssp HHHHHTCCCEEEEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEE
T ss_pred eehcccCCCceEEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCC
Confidence 3678888887665433222 22345679999999977666 456889999987421 1222222223 788
Q ss_pred EEEecCCCEEEEEeC----------CCeEEEEeCCCCeeeeeecCCCc----eeeeeeeeeeehccccccccccccccce
Q 005277 553 LAMSPDGRYMASGDE----------DGTIMMWDLASGRCVTPLMGHTS----CVWTLAYRFLLLVTNAYLKISDKVSTGF 618 (704)
Q Consensus 553 l~~spdg~~l~sg~~----------dg~I~iwdl~~~~~~~~~~~h~~----~V~sl~~~~~~~~~~~~~~~~~~~~~~~ 618 (704)
+++.++|++.++... .+.|..+|. .++.+..+....+ .+.++.+
T Consensus 234 i~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~--------------------- 291 (322)
T 2fp8_A 234 IKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE--------------------- 291 (322)
T ss_dssp EEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE---------------------
T ss_pred eEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE---------------------
Confidence 999999987666544 467888886 4666665543321 2222222
Q ss_pred eeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCC
Q 005277 619 LFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTS 655 (704)
Q Consensus 619 ~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~ 655 (704)
.++.++++....+.|.++++...
T Consensus 292 --------------~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 292 --------------HDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp --------------ETTEEEEECSSCSEEEEEEC---
T ss_pred --------------eCCEEEEeecCCCceEEEecccc
Confidence 24566666667888999988654
No 240
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.83 E-value=3.8e-07 Score=94.56 Aligned_cols=219 Identities=11% Similarity=-0.000 Sum_probs=147.9
Q ss_pred CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEeCC
Q 005277 363 GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSAD 442 (704)
Q Consensus 363 g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D 442 (704)
+..|.+|+.++.|..+|... .. ......+...+.++...+++. ++.++.+
T Consensus 107 ~~~l~v~t~~~~l~~~d~~g-~~----------------------------~~~~~~~~~~~~~~~~~~~g~-l~vgt~~ 156 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTDG-TE----------------------------KWRFKTKKAIYATPIVSEDGT-IYVGSND 156 (330)
T ss_dssp TTEEEEECTTSEEEEECTTS-CE----------------------------EEEEECSSCCCSCCEECTTSC-EEEECTT
T ss_pred CCEEEEEecCCEEEEEcCCC-CE----------------------------EEEEcCCCceeeeeEEcCCCE-EEEEcCC
Confidence 44577788888888888651 11 011111223345556666666 6667788
Q ss_pred CeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEE
Q 005277 443 TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIAT 522 (704)
Q Consensus 443 g~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~t 522 (704)
+.|..+|.. ++....+......+.++...+++..++ ++ +.+..|| .+++....+......+.++...+++. |.+
T Consensus 157 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v 230 (330)
T 3hxj_A 157 NYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYV 230 (330)
T ss_dssp SEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEE
T ss_pred CEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEE
Confidence 999999999 877777776666778888877887544 44 8899999 67777766665666788888888764 566
Q ss_pred EECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeeh
Q 005277 523 GSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLL 602 (704)
Q Consensus 523 gs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~ 602 (704)
++.++.|..+| .+++.+..+......+.++.+.++| .|..++.+|.|..+|. +++.+..+......+.++..
T Consensus 231 ~t~~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~----- 302 (330)
T 3hxj_A 231 TSLDGHLYAIN-PDGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVI----- 302 (330)
T ss_dssp EETTTEEEEEC-TTSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEE-----
T ss_pred EcCCCeEEEEC-CCCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEE-----
Confidence 77788899998 4666666665554445556666566 4667888888999995 67766555443334444433
Q ss_pred ccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCC
Q 005277 603 VTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTS 655 (704)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~ 655 (704)
..+|. |..|+.+|.+++......
T Consensus 303 -----------------------------d~~g~-l~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 303 -----------------------------DENGT-IYFGTRNGKFYALFNLEH 325 (330)
T ss_dssp -----------------------------CTTCC-EEEECTTSCEEEEEC---
T ss_pred -----------------------------cCCCE-EEEEcCCCeEEEEecccc
Confidence 56665 566888999999887653
No 241
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.83 E-value=2.7e-06 Score=90.27 Aligned_cols=188 Identities=9% Similarity=-0.004 Sum_probs=127.0
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCe---
Q 005277 432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDV--- 508 (704)
Q Consensus 432 ~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~~V--- 508 (704)
++..++.++.++.|..+|..+++.+..+............ .+..+++++.++.+..+|..+++.+..+.......
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~ 179 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR 179 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence 3567888899999999999999988777654322222222 24578888899999999999998887765432211
Q ss_pred --eEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCC-------EEEEEEec--CCCEEEEEeCCCeEEEEeCC
Q 005277 509 --DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM-------ILSLAMSP--DGRYMASGDEDGTIMMWDLA 577 (704)
Q Consensus 509 --~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~-------i~~l~~sp--dg~~l~sg~~dg~I~iwdl~ 577 (704)
..... .+..+++++.++.|..+|..+|+.+..+...... +..+...| .+..+++++.+|.+..+|..
T Consensus 180 ~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~ 257 (376)
T 3q7m_A 180 GESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLR 257 (376)
T ss_dssp CCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETT
T ss_pred CCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECC
Confidence 11222 2457888888999999999999988776532110 00011111 35677888889999999999
Q ss_pred CCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcc
Q 005277 578 SGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTK 657 (704)
Q Consensus 578 ~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~ 657 (704)
+|+.+...... ....+ ..++..++.++.+|.|..+|..+++.
T Consensus 258 tG~~~w~~~~~--~~~~~------------------------------------~~~~~~l~~~~~~g~l~~~d~~tG~~ 299 (376)
T 3q7m_A 258 SGQIMWKRELG--SVNDF------------------------------------IVDGNRIYLVDQNDRVMALTIDGGVT 299 (376)
T ss_dssp TCCEEEEECCC--CEEEE------------------------------------EEETTEEEEEETTCCEEEEETTTCCE
T ss_pred CCcEEeeccCC--CCCCc------------------------------------eEECCEEEEEcCCCeEEEEECCCCcE
Confidence 99877554321 11111 22356788888899999999999876
Q ss_pred cccc
Q 005277 658 VLKT 661 (704)
Q Consensus 658 ~~~~ 661 (704)
....
T Consensus 300 ~w~~ 303 (376)
T 3q7m_A 300 LWTQ 303 (376)
T ss_dssp EEEE
T ss_pred EEee
Confidence 5443
No 242
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.81 E-value=9.2e-08 Score=101.05 Aligned_cols=208 Identities=12% Similarity=-0.044 Sum_probs=126.0
Q ss_pred EEEEcCCCCEEEEEe----------CCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277 356 CASISQDGSLVAGGF----------SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (704)
Q Consensus 356 ~~~fs~dg~~lasg~----------~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (704)
.+.++|||+++.++. .++.|.+||+.+............ . +...+ ....
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~----------------~---~~~~g--~~P~ 127 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDA----------------P---RFSVG--PRVH 127 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTS----------------C---SCCBS--CCTT
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCc----------------c---ccccC--CCcc
Confidence 799999999988886 368899999887432221100000 0 00000 1245
Q ss_pred EEEEcCCCCEEEEEeC--CCeEEE--EeCCCCceeEEeecCCc----C---eeEEEE-----------------------
Q 005277 426 SASFSPLGDFILSSSA--DTTIRL--WSTKLNANLVCYKGHNY----P---VWDVQF----------------------- 471 (704)
Q Consensus 426 ~l~~sp~~~~l~s~s~--Dg~I~l--wd~~~~~~~~~~~~h~~----~---V~~v~~----------------------- 471 (704)
.+.++|||++++++.. +..|.+ +|+.+ +..+..-.. + -.-+.+
T Consensus 128 ~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~ 204 (368)
T 1mda_H 128 IIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGA 204 (368)
T ss_dssp SEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCC
T ss_pred eEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEE
Confidence 6888999998887764 356888 88865 222210000 0 000111
Q ss_pred --------------cCCCCEEEEEeCCCeEEEEECCCCc--eeEEecc----------CCCCeeEEEEcCCCCEEEEEEC
Q 005277 472 --------------NPQGHYFASSSHDRTARIWSMDRIQ--PLRIMAG----------HLSDVDCVRWHINCNYIATGSS 525 (704)
Q Consensus 472 --------------sp~~~~l~sgs~dg~i~lwd~~~~~--~~~~~~~----------~~~~V~~v~~~p~~~~l~tgs~ 525 (704)
.+++..++..+. +.+.+.|+.... .+..+.. .......+.++|+++.++++..
T Consensus 205 ~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~ 283 (368)
T 1mda_H 205 QCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTV 283 (368)
T ss_dssp CSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEE
T ss_pred EeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEec
Confidence 223333333333 666666664322 1111110 0111223789999998887643
Q ss_pred -C--------CcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCC-EEEEEe-CCCeEEEEeCCCCeeeeeecCCC
Q 005277 526 -D--------KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR-YMASGD-EDGTIMMWDLASGRCVTPLMGHT 589 (704)
Q Consensus 526 -d--------g~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~-~l~sg~-~dg~I~iwdl~~~~~~~~~~~h~ 589 (704)
. +.+.++|+.+++.+..+.... ...+++|+|||+ .+++.. .++.|.++|+.+++.+.++....
T Consensus 284 ~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~ 357 (368)
T 1mda_H 284 EHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDK 357 (368)
T ss_dssp ECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCS
T ss_pred cccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCC
Confidence 2 356699999999888776433 578999999998 456666 59999999999999999887554
No 243
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.79 E-value=7.4e-07 Score=98.13 Aligned_cols=188 Identities=10% Similarity=0.038 Sum_probs=132.0
Q ss_pred CCCCEEEEEeC-CCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEE-c-CCCCEEE
Q 005277 361 QDGSLVAGGFS-DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF-S-PLGDFIL 437 (704)
Q Consensus 361 ~dg~~lasg~~-dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-s-p~~~~l~ 437 (704)
+||++|.+... ++.|.+.|+........ + .+ ........+++ + |++++++
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~i-------------------------i-~i-p~g~~phg~~~~~~p~~~~v~ 151 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAI-------------------------L-EI-PNAKGIHGLRPQKWPRSNYVF 151 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEE-------------------------E-EC-SSCCSEEEEEECCSSBCSEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeE-------------------------E-eC-CCCCCCcceeeeecCCCcEEE
Confidence 47888777665 56699999887432111 1 11 11234667787 4 8999988
Q ss_pred EEe------------------CCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCC--------------
Q 005277 438 SSS------------------ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR-------------- 485 (704)
Q Consensus 438 s~s------------------~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg-------------- 485 (704)
+++ .++.+.++|..+.+.+.++.--. ....++++|+|+++++.+.+.
T Consensus 152 ~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~ 230 (595)
T 1fwx_A 152 CNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEM 230 (595)
T ss_dssp EEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSE
T ss_pred EecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhcccccc
Confidence 884 34689999999988887776323 346788999999998887543
Q ss_pred ------------------------eEEEEECCC--Cce-eEEeccCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCC
Q 005277 486 ------------------------TARIWSMDR--IQP-LRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSG 537 (704)
Q Consensus 486 ------------------------~i~lwd~~~--~~~-~~~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~ 537 (704)
.|.+.|..+ ++. +..+.. .....++.++|||+++++++ .+.+|.++|+.+.
T Consensus 231 d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~ 309 (595)
T 1fwx_A 231 DHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF 309 (595)
T ss_dssp EEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred ceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECccc
Confidence 366677766 434 344432 23567899999999887765 6789999999865
Q ss_pred c------------EEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 005277 538 E------------CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578 (704)
Q Consensus 538 ~------------~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~ 578 (704)
+ .+... .-......++|+|+|...++...|+.|.+||+.+
T Consensus 310 ~~~~~~~l~~~~~v~~~v-~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 310 DAVFYENADPRSAVVAEP-ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp HHHHHSCCCGGGGEEECC-BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred ccccccccCcccceEEEc-CCCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 3 23333 2334678999999995555677899999999876
No 244
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.78 E-value=1e-05 Score=81.26 Aligned_cols=215 Identities=9% Similarity=0.047 Sum_probs=135.7
Q ss_pred CEEEEEEcCCCC-EEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcC
Q 005277 353 GLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (704)
Q Consensus 353 ~V~~~~fs~dg~-~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 431 (704)
.+.+++|++++. ++++-..++.|.++++..... ............++++++
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~----------------------------~~~~~~~~~~p~~ia~d~ 88 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP----------------------------TTIIRQDLGSPEGIALDH 88 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC----------------------------EEEECTTCCCEEEEEEET
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc----------------------------EEEEECCCCCccEEEEEe
Confidence 578899999655 555555678899999764210 011111123568899999
Q ss_pred CCCEEE-EEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeC---CCeEEEEECCCCceeEEeccCCCC
Q 005277 432 LGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH---DRTARIWSMDRIQPLRIMAGHLSD 507 (704)
Q Consensus 432 ~~~~l~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~---dg~i~lwd~~~~~~~~~~~~~~~~ 507 (704)
++..|+ +....+.|.+++++.................++++|++..++.+.. .+.|..++++..............
T Consensus 89 ~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~ 168 (267)
T 1npe_A 89 LGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGL 168 (267)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSC
T ss_pred cCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCC
Confidence 766555 4456789999998754332222222245689999996555555543 468888888754332222233456
Q ss_pred eeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeec
Q 005277 508 VDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM 586 (704)
Q Consensus 508 V~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~ 586 (704)
...++++|++..|+.+. ..+.|.++|...........+ ......++.. .+..+++....+.|.++|..+++.+..+.
T Consensus 169 P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 169 PNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred CcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence 78899999877766554 567899999975544333332 3345677764 34444444466899999999999888875
Q ss_pred CCC-ceeeeeee
Q 005277 587 GHT-SCVWTLAY 597 (704)
Q Consensus 587 ~h~-~~V~sl~~ 597 (704)
... ...+.+.+
T Consensus 247 ~g~~~~p~gi~~ 258 (267)
T 1npe_A 247 PHKQTRLYGITI 258 (267)
T ss_dssp CSSCCCCCCEEE
T ss_pred cccccccceeee
Confidence 433 23455555
No 245
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.74 E-value=1.6e-06 Score=86.71 Aligned_cols=193 Identities=8% Similarity=-0.001 Sum_probs=137.5
Q ss_pred eEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCceeEEeecCC-cCeeEEEEcCCCCEEE-EEeCCCeEEEEECCCCceeE
Q 005277 424 VYSASFSPLGDFILSSSA--DTTIRLWSTKLNANLVCYKGHN-YPVWDVQFNPQGHYFA-SSSHDRTARIWSMDRIQPLR 499 (704)
Q Consensus 424 V~~l~~sp~~~~l~s~s~--Dg~I~lwd~~~~~~~~~~~~h~-~~V~~v~~sp~~~~l~-sgs~dg~i~lwd~~~~~~~~ 499 (704)
...+.|++++.+.++.+. ++.|+++|+.+++.+..+.-.. .....+++. +..++ +.-.++.+.++|..+.+.+.
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~ 100 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIK 100 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEE
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEE
Confidence 579999998654444443 5799999999999888775322 122345554 44444 44468999999999999888
Q ss_pred EeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCC-----CCEEEEEEecCCCEEEEEeCCCeEEEE
Q 005277 500 IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-----SMILSLAMSPDGRYMASGDEDGTIMMW 574 (704)
Q Consensus 500 ~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-----~~i~~l~~spdg~~l~sg~~dg~I~iw 574 (704)
.+..... ....++++++.++++..++.|.++|..+.+.+..+.-.. ..+..+.|. +|+..+....++.|.+.
T Consensus 101 ~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vI 177 (266)
T 2iwa_A 101 NFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARI 177 (266)
T ss_dssp EEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred EEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEE
Confidence 8753211 123355688878777778999999999998887765321 246788888 77655555568899999
Q ss_pred eCCCCeeeeeecCCC-------------ceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCC-EEEE
Q 005277 575 DLASGRCVTPLMGHT-------------SCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGS-LLAS 640 (704)
Q Consensus 575 dl~~~~~~~~~~~h~-------------~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~las 640 (704)
|..+++.+..+.... .....+++ +++++ ++++
T Consensus 178 D~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~----------------------------------~~~~~~lfVT 223 (266)
T 2iwa_A 178 SAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAW----------------------------------DQENKRIFVT 223 (266)
T ss_dssp ETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEE----------------------------------ETTTTEEEEE
T ss_pred ECCCCcEEEEEECCCcccccccccccccCceEEEEE----------------------------------cCCCCEEEEE
Confidence 999999888775321 23456666 88875 5566
Q ss_pred EeCCCcEEEEeCCCC
Q 005277 641 GSADCTVKLWDVTTS 655 (704)
Q Consensus 641 gs~Dg~V~iWd~~~~ 655 (704)
+...+.|.+.++...
T Consensus 224 gk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 224 GKLWPKLFEIKLHLV 238 (266)
T ss_dssp ETTCSEEEEEEEEEC
T ss_pred CCCCCeEEEEEEecc
Confidence 767889999888664
No 246
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.73 E-value=7.7e-07 Score=102.18 Aligned_cols=274 Identities=9% Similarity=0.026 Sum_probs=152.3
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------cEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC
Q 005277 356 CASISQ-DGSLVAGGFSDS-----------SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (704)
Q Consensus 356 ~~~fs~-dg~~lasg~~dg-----------~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 423 (704)
++++.+ ++++++.|+.+. .+.+||..+..-.. .......+...
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~-------------------------~~~~~~~~~~~ 244 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSD-------------------------RTVTVTKHDMF 244 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCC-------------------------CEEEECSCCCS
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEe-------------------------CcccCCCCCCc
Confidence 456666 899999987643 47778766421100 00111123333
Q ss_pred eEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeEEeecCCc-CeeEEEEcCCCCEEEEEe-CC-----CeEEEEECCCC
Q 005277 424 VYSASFSPLGDFILSSS-ADTTIRLWSTKLNANLVCYKGHNY-PVWDVQFNPQGHYFASSS-HD-----RTARIWSMDRI 495 (704)
Q Consensus 424 V~~l~~sp~~~~l~s~s-~Dg~I~lwd~~~~~~~~~~~~h~~-~V~~v~~sp~~~~l~sgs-~d-----g~i~lwd~~~~ 495 (704)
..++++..+++.++.|+ .++.+.+||..+.+-...-..+.. .-.+++..++++.++.|+ .+ ..+.+||..+.
T Consensus 245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred cccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence 44577888999888887 456899999886643322111211 123456677999999998 44 57899999876
Q ss_pred ceeEEe----ccCCCCeeEEEEcCCCCEEEEEECCC---------cEEEEeCCCCcEEEEeecCC---------CCEEEE
Q 005277 496 QPLRIM----AGHLSDVDCVRWHINCNYIATGSSDK---------TVRLWDVSSGECVRIFIGHR---------SMILSL 553 (704)
Q Consensus 496 ~~~~~~----~~~~~~V~~v~~~p~~~~l~tgs~dg---------~I~iwd~~~~~~~~~~~~h~---------~~i~~l 553 (704)
+-...- ......-....+..++..++.|+.+| .+..||..+.........+. ..-.++
T Consensus 325 ~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av 404 (656)
T 1k3i_A 325 TWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAV 404 (656)
T ss_dssp EEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEE
T ss_pred cceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceE
Confidence 533320 00000000011224455555555443 46788887765443322111 122445
Q ss_pred EEec-CCCEEEEEeCCC-----------eEEEEeCCCCeeeeee--cCCCceeeeeeeeeeehcccccccccccccccee
Q 005277 554 AMSP-DGRYMASGDEDG-----------TIMMWDLASGRCVTPL--MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFL 619 (704)
Q Consensus 554 ~~sp-dg~~l~sg~~dg-----------~I~iwdl~~~~~~~~~--~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~ 619 (704)
.|.. ++++++.|+.++ .|.+||..+....... ..+.......
T Consensus 405 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~------------------------ 460 (656)
T 1k3i_A 405 MYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHT------------------------ 460 (656)
T ss_dssp EEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCE------------------------
T ss_pred eccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCC------------------------
Confidence 5544 778888887543 5777777665433221 1111111000
Q ss_pred eeeeeEEeecccCCCCCEEEEEeCC-----------CcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEE
Q 005277 620 FYSLTIIYFGCASCEGSLLASGSAD-----------CTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQF 688 (704)
Q Consensus 620 ~~~~~~~~~~~~s~~g~~lasgs~D-----------g~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~f 688 (704)
++..+++++++.||.+ ..+.+||..+.. +..+..++.......+..+
T Consensus 461 ---------~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~-------------W~~~~~~~~~R~~hs~a~l 518 (656)
T 1k3i_A 461 ---------SVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT-------------FYKQNPNSIVRVYHSISLL 518 (656)
T ss_dssp ---------EEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE-------------EEECCCCSSCCCTTEEEEE
T ss_pred ---------eEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCc-------------eeecCCCCCccccccHhhc
Confidence 0116789999999865 468888876532 2223333333334445567
Q ss_pred ccCCcEEEEeec
Q 005277 689 SRRNLLFAAGAL 700 (704)
Q Consensus 689 s~~g~~La~gs~ 700 (704)
.++|++++.|+.
T Consensus 519 l~dg~v~v~GG~ 530 (656)
T 1k3i_A 519 LPDGRVFNGGGG 530 (656)
T ss_dssp CTTSCEEEEECC
T ss_pred CCCcEEEecCCC
Confidence 799999999985
No 247
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.71 E-value=5.4e-05 Score=88.82 Aligned_cols=276 Identities=11% Similarity=0.089 Sum_probs=169.2
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEc
Q 005277 351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (704)
Q Consensus 351 ~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 430 (704)
...|.++...++|.+.+ |+.++-+.+|+..+......... . ... ..-....|.++...
T Consensus 214 ~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~---------------~-~~~-----~~l~~~~i~~i~~d 271 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHS---------------P-SNP-----KSISSNYIRSLAMD 271 (795)
T ss_dssp CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCC---------------T-TCT-----TSCSCSBEEEEEEC
T ss_pred CCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecC---------------C-CCc-----cccCCCeEEEEEEc
Confidence 45688888888777554 55444477888654211100000 0 000 00123569999999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCceeEEeec-------CCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc
Q 005277 431 PLGDFILSSSADTTIRLWSTKLNANLVCYKG-------HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG 503 (704)
Q Consensus 431 p~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~-------h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~ 503 (704)
++|.+.+ |+.+ -|.+|+..++........ ....|.++...++|. +..|+.++-|..|+..+.... .+..
T Consensus 272 ~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~ 347 (795)
T 4a2l_A 272 SQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFK-NIRN 347 (795)
T ss_dssp TTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSE-EECC
T ss_pred CCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccce-EEcC
Confidence 8887544 4555 488999876654332211 235699999998886 677888788999987654322 2221
Q ss_pred -------CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeec--------CCCCEEEEEEecCCCEEEEEeCC
Q 005277 504 -------HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG--------HRSMILSLAMSPDGRYMASGDED 568 (704)
Q Consensus 504 -------~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~--------h~~~i~~l~~spdg~~l~sg~~d 568 (704)
....|.++...++|+ |.+|+.++-|..||..++........ ....|.+++..++|+.|..|+.+
T Consensus 348 ~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~ 426 (795)
T 4a2l_A 348 IPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHA 426 (795)
T ss_dssp CTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETT
T ss_pred CCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCc
Confidence 234688998887775 66688888899999887765443211 23579999999999866677877
Q ss_pred CeEEEEeCCCCeeeeeec----CCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCC
Q 005277 569 GTIMMWDLASGRCVTPLM----GHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSAD 644 (704)
Q Consensus 569 g~I~iwdl~~~~~~~~~~----~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~D 644 (704)
+-|.+||..+++...... .+...|.++.. .++|.+.+.. .
T Consensus 427 ~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~----------------------------------d~~g~lwigt-~- 470 (795)
T 4a2l_A 427 GGLSILHRNSGQVENFNQRNSQLVNENVYAILP----------------------------------DGEGNLWLGT-L- 470 (795)
T ss_dssp TEEEEEETTTCCEEEECTTTSCCSCSCEEEEEE----------------------------------CSSSCEEEEE-S-
T ss_pred CceeEEeCCCCcEEEeecCCCCcCCCeeEEEEE----------------------------------CCCCCEEEEe-c-
Confidence 779999988775433221 12345555554 6677655544 4
Q ss_pred CcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEe
Q 005277 645 CTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAG 698 (704)
Q Consensus 645 g~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~g 698 (704)
+-|.+||..++.... ..... ..-......|.++...++|.+.+..
T Consensus 471 ~Gl~~~~~~~~~~~~-~~~~~--------~~~~~~~~~i~~i~~d~~g~lWigt 515 (795)
T 4a2l_A 471 SALVRFNPEQRSFTT-IEKEK--------DGTPVVSKQITTLFRDSHKRLWIGG 515 (795)
T ss_dssp SCEEEEETTTTEEEE-CCBCT--------TCCBCCCCCEEEEEECTTCCEEEEE
T ss_pred CceeEEeCCCCeEEE-ccccc--------cccccCCceEEEEEECCCCCEEEEe
Confidence 458889977653211 00000 0001123568899998888766654
No 248
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.65 E-value=7e-06 Score=82.09 Aligned_cols=200 Identities=7% Similarity=0.002 Sum_probs=134.9
Q ss_pred eeCCCC--EEEEEEcCCCCEEEEEeC--CCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccC
Q 005277 348 INTHNG--LNCASISQDGSLVAGGFS--DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (704)
Q Consensus 348 ~~~~~~--V~~~~fs~dg~~lasg~~--dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 423 (704)
..|... ...++|++|+.+.++.+. ++.|+++|+.+...... ..+..+ ..
T Consensus 15 ~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~--------------------------i~l~~~-~f 67 (266)
T 2iwa_A 15 FPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENI--------------------------HKMDDS-YF 67 (266)
T ss_dssp EECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEE--------------------------EECCTT-CC
T ss_pred EECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEE--------------------------EecCCC-cc
Confidence 455543 578999998765555443 68999999876332111 001111 11
Q ss_pred eEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec
Q 005277 424 VYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA 502 (704)
Q Consensus 424 V~~l~~sp~~~~l~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~ 502 (704)
...+++. +..|+ +.-.++.+.++|..+.+.+..+......-+. ++++|..++++..++.|.++|..+.+.+..+.
T Consensus 68 geGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g~g--lt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~ 143 (266)
T 2iwa_A 68 GEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDGWG--LATDGKILYGSDGTSILYEIDPHTFKLIKKHN 143 (266)
T ss_dssp EEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEECCSSSCCE--EEECSSSEEEECSSSEEEEECTTTCCEEEEEE
T ss_pred eEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEECCCCCeEE--EEECCCEEEEECCCCeEEEEECCCCcEEEEEE
Confidence 2245554 44555 5556789999999999988888633122234 44577777777778999999999988877765
Q ss_pred cCC-----CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecC-------------CCCEEEEEEecCCCE-EE
Q 005277 503 GHL-----SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH-------------RSMILSLAMSPDGRY-MA 563 (704)
Q Consensus 503 ~~~-----~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h-------------~~~i~~l~~spdg~~-l~ 563 (704)
-.. ..++.+.|. ++...+....++.|.+.|..+++.+..+.-. ......|+|+|+++. ++
T Consensus 144 Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfV 222 (266)
T 2iwa_A 144 VKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFV 222 (266)
T ss_dssp CEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEE
T ss_pred ECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEE
Confidence 321 236678887 6644444446789999999999998887532 135689999999865 55
Q ss_pred EEeCCCeEEEEeCCCC
Q 005277 564 SGDEDGTIMMWDLASG 579 (704)
Q Consensus 564 sg~~dg~I~iwdl~~~ 579 (704)
++...+.+.+.++...
T Consensus 223 Tgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 223 TGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EETTCSEEEEEEEEEC
T ss_pred ECCCCCeEEEEEEecc
Confidence 5667888998887654
No 249
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.64 E-value=7e-05 Score=87.86 Aligned_cols=269 Identities=9% Similarity=0.002 Sum_probs=167.8
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcC
Q 005277 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (704)
Q Consensus 352 ~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 431 (704)
..|.++...++|. |..|+.++-|..|+........... .. . ...-....|.++...+
T Consensus 310 ~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~-----------------~~---~--~~~l~~~~V~~i~~d~ 366 (795)
T 4a2l_A 310 RSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRN-----------------IP---Y--KNSLSDNVVSCIVEDK 366 (795)
T ss_dssp SCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECC-----------------CT---T--SSSCSCSSEEEEEECT
T ss_pred CcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcC-----------------CC---C--CCCCCCCeeEEEEECC
Confidence 5699999999887 5567777778888765321100000 00 0 0001235699999988
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEeec--------CCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec-
Q 005277 432 LGDFILSSSADTTIRLWSTKLNANLVCYKG--------HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA- 502 (704)
Q Consensus 432 ~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~--------h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~- 502 (704)
+|. |..|+.++-|..|+..++........ ....|.++...++|..+..|+.++-+.+||..+++......
T Consensus 367 ~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~ 445 (795)
T 4a2l_A 367 DKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQR 445 (795)
T ss_dssp TSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTT
T ss_pred CCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecC
Confidence 887 55677777799999886654332211 23568999998888867788887889999998765443322
Q ss_pred ---cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeec------CCCCEEEEEEecCCCEEEEEeCCCeEEE
Q 005277 503 ---GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG------HRSMILSLAMSPDGRYMASGDEDGTIMM 573 (704)
Q Consensus 503 ---~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~------h~~~i~~l~~spdg~~l~sg~~dg~I~i 573 (704)
.....|.++...+++.+. .|+. +.+.+||..+++....... ....|.++...++|+..+.. .. -|..
T Consensus 446 ~~~l~~~~v~~i~~d~~g~lw-igt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~~-Gl~~ 521 (795)
T 4a2l_A 446 NSQLVNENVYAILPDGEGNLW-LGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG-EE-GLSV 521 (795)
T ss_dssp TSCCSCSCEEEEEECSSSCEE-EEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE-SS-CEEE
T ss_pred CCCcCCCeeEEEEECCCCCEE-EEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe-CC-ceEE
Confidence 134578899888877644 4445 4589999887765433211 23579999999998866544 44 4888
Q ss_pred EeCCCCeeeeeecC-------CCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCc
Q 005277 574 WDLASGRCVTPLMG-------HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCT 646 (704)
Q Consensus 574 wdl~~~~~~~~~~~-------h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~ 646 (704)
||..+++. .+.. ....|.++.. .++|.+.++.. . -
T Consensus 522 ~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~----------------------------------d~~g~lWigT~-~-G 563 (795)
T 4a2l_A 522 FKQEGLDI--QKASILPVSNVTKLFTNCIYE----------------------------------ASNGIIWVGTR-E-G 563 (795)
T ss_dssp EEEETTEE--EECCCSCSCGGGGSCEEEEEE----------------------------------CTTSCEEEEES-S-C
T ss_pred EeCCCCeE--EEecCCCCCCCCCCeeEEEEE----------------------------------CCCCCEEEEeC-C-C
Confidence 99877654 2221 1234455544 67777655443 3 5
Q ss_pred EEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEe
Q 005277 647 VKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAG 698 (704)
Q Consensus 647 V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~g 698 (704)
|..||..+.... .... ...+ ....|.++...++|.+.+++
T Consensus 564 l~~~d~~~~~~~-~~~~---------~~gl--~~~~i~~i~~d~~g~lWi~t 603 (795)
T 4a2l_A 564 FYCFNEKDKQIK-RYNT---------TNGL--PNNVVYGILEDSFGRLWLST 603 (795)
T ss_dssp EEEEETTTTEEE-EECG---------GGTC--SCSCEEEEEECTTSCEEEEE
T ss_pred ceeECCCCCcEE-EeCC---------CCCC--chhheEEEEECCCCCEEEEc
Confidence 888887664321 0000 0011 13357888888888766554
No 250
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.61 E-value=3.4e-05 Score=79.34 Aligned_cols=212 Identities=9% Similarity=0.041 Sum_probs=128.0
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcC
Q 005277 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (704)
Q Consensus 352 ~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 431 (704)
.....++|+++|+++++-..++.|..|+.... ....+ ...+.+.++++.+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-----------------------------~~~~~-~~~~~p~gia~~~ 81 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-----------------------------QQIHA-TVEGKVSGLAFTS 81 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-----------------------------EEEEE-ECSSEEEEEEECT
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-----------------------------eEEEE-eCCCCceeEEEcC
Confidence 56788999999998888778899988886531 00011 1123578999999
Q ss_pred CCCEEEEEeCC-C-eEEEEeCCCCceeEEeec-CCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCce-eEEec-----
Q 005277 432 LGDFILSSSAD-T-TIRLWSTKLNANLVCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP-LRIMA----- 502 (704)
Q Consensus 432 ~~~~l~s~s~D-g-~I~lwd~~~~~~~~~~~~-h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~-~~~~~----- 502 (704)
+++++++.... + .|..++..+++....... .......++..+.+..+++-..++.|.++|...+.. +....
T Consensus 82 dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~ 161 (306)
T 2p4o_A 82 NGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLAR 161 (306)
T ss_dssp TSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSC
T ss_pred CCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCcccc
Confidence 99966555432 2 466677776664332221 122334555555555555554688899998875421 21111
Q ss_pred ----cCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCC-CcE--EEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEE
Q 005277 503 ----GHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSS-GEC--VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMW 574 (704)
Q Consensus 503 ----~~~~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~~-~~~--~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iw 574 (704)
........+ +|+++.|+++. ..+.|..||+.. +.. ...+.. ......++++++|+++++....+.|.++
T Consensus 162 ~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~ 238 (306)
T 2p4o_A 162 SNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRI 238 (306)
T ss_dssp SSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEE
T ss_pred ccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEE
Confidence 111234455 78887766554 567899999874 321 122211 1345678999999887777778899999
Q ss_pred eCCCCeeee--eecCCCceeeeeee
Q 005277 575 DLASGRCVT--PLMGHTSCVWTLAY 597 (704)
Q Consensus 575 dl~~~~~~~--~~~~h~~~V~sl~~ 597 (704)
|.. ++... .+.......++++|
T Consensus 239 ~~~-G~~~~~~~~~~~~~~p~~~a~ 262 (306)
T 2p4o_A 239 APD-RSTTIIAQAEQGVIGSTAVAF 262 (306)
T ss_dssp CTT-CCEEEEECGGGTCTTEEEEEE
T ss_pred CCC-CCEEEEeecccccCCceEEEE
Confidence 975 55422 23322234566666
No 251
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.60 E-value=5.6e-06 Score=81.87 Aligned_cols=158 Identities=14% Similarity=0.116 Sum_probs=113.5
Q ss_pred eEEEEEcCCCCEEEEEeCCC--eEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEe-CCCeEEEEECCCCceeEE
Q 005277 424 VYSASFSPLGDFILSSSADT--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWSMDRIQPLRI 500 (704)
Q Consensus 424 V~~l~~sp~~~~l~s~s~Dg--~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs-~dg~i~lwd~~~~~~~~~ 500 (704)
...+.|+ ++.+..+++.+| .|+.+|+.+++.+..+.... ........+++..++... .++.+.+||..+.+.+..
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~t 122 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRS 122 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEE
Confidence 4788998 666666777766 89999999999988876433 333322233354555544 589999999999999988
Q ss_pred eccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCC-----CCEEEEEEecCCCEEEEEeCCCeEEEEe
Q 005277 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-----SMILSLAMSPDGRYMASGDEDGTIMMWD 575 (704)
Q Consensus 501 ~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-----~~i~~l~~spdg~~l~sg~~dg~I~iwd 575 (704)
+.-.. ....+++++..|+.+..++.|.++|..+.+.+..+.... ..++.+.|. +|+..+..-.++.|.+.|
T Consensus 123 i~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vID 198 (262)
T 3nol_A 123 FNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRID 198 (262)
T ss_dssp EECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEC
T ss_pred EECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEE
Confidence 87432 222333677777777667889999999999888765421 335567886 787665555788999999
Q ss_pred CCCCeeeeeecC
Q 005277 576 LASGRCVTPLMG 587 (704)
Q Consensus 576 l~~~~~~~~~~~ 587 (704)
..+++.+..+..
T Consensus 199 p~tG~V~~~Id~ 210 (262)
T 3nol_A 199 PETGKVTGIIDL 210 (262)
T ss_dssp TTTCBEEEEEEC
T ss_pred CCCCcEEEEEEC
Confidence 999998887753
No 252
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.59 E-value=3.2e-06 Score=97.08 Aligned_cols=185 Identities=9% Similarity=0.048 Sum_probs=124.3
Q ss_pred CCeEEEEeCCCCceeEEeecCC-------------------------------cCeeEEEEcCCCCEEEEEeCCC-----
Q 005277 442 DTTIRLWSTKLNANLVCYKGHN-------------------------------YPVWDVQFNPQGHYFASSSHDR----- 485 (704)
Q Consensus 442 Dg~I~lwd~~~~~~~~~~~~h~-------------------------------~~V~~v~~sp~~~~l~sgs~dg----- 485 (704)
+|.|..+|..+++.+..+.... .....+++.|.+..++.++.++
T Consensus 177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~ 256 (668)
T 1kv9_A 177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNR 256 (668)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCcccc
Confidence 5899999999999988775310 0112468888888888887766
Q ss_pred --------------eEEEEECCCCceeEEecc--CC-------CCeeEEEEcCCCC---EEEEEECCCcEEEEeCCCCcE
Q 005277 486 --------------TARIWSMDRIQPLRIMAG--HL-------SDVDCVRWHINCN---YIATGSSDKTVRLWDVSSGEC 539 (704)
Q Consensus 486 --------------~i~lwd~~~~~~~~~~~~--~~-------~~V~~v~~~p~~~---~l~tgs~dg~I~iwd~~~~~~ 539 (704)
.|..+|.++++.+..+.. |. .+.....+..+|+ .+++++.+|.++++|..+|+.
T Consensus 257 ~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 336 (668)
T 1kv9_A 257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL 336 (668)
T ss_dssp HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred CCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE
Confidence 399999999998887764 22 2222223334664 688899999999999999998
Q ss_pred EEEeecCC------------CC------------------------EEEEEEecCCCEEEEEe-----------------
Q 005277 540 VRIFIGHR------------SM------------------------ILSLAMSPDGRYMASGD----------------- 566 (704)
Q Consensus 540 ~~~~~~h~------------~~------------------------i~~l~~spdg~~l~sg~----------------- 566 (704)
+....... .+ -..++++|+...+++..
T Consensus 337 l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~ 416 (668)
T 1kv9_A 337 ISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTR 416 (668)
T ss_dssp EEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCC
T ss_pred eccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccc
Confidence 74432211 00 01267888766665422
Q ss_pred -------------------CCCeEEEEeCCCCeeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEe
Q 005277 567 -------------------EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIY 627 (704)
Q Consensus 567 -------------------~dg~I~iwdl~~~~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (704)
.+|.|..||+.+++.+-....+. +......
T Consensus 417 ~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~------------------------------ 465 (668)
T 1kv9_A 417 KAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTL------------------------------ 465 (668)
T ss_dssp SSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SCCCCEE------------------------------
T ss_pred cccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC-CCcCcee------------------------------
Confidence 23678888888887765543221 1111111
Q ss_pred ecccCCCCCEEEEEeCCCcEEEEeCCCCcccccc
Q 005277 628 FGCASCEGSLLASGSADCTVKLWDVTTSTKVLKT 661 (704)
Q Consensus 628 ~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~ 661 (704)
...+.++++|+.||.|++||..+++.+...
T Consensus 466 ----~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~ 495 (668)
T 1kv9_A 466 ----STAGNLVFQGTAAGQMHAYSADKGEALWQF 495 (668)
T ss_dssp ----EETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred ----EeCCCEEEEECCcccchhhhhhcChhheEe
Confidence 445778999999999999999998876544
No 253
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.59 E-value=1.6e-05 Score=89.43 Aligned_cols=111 Identities=9% Similarity=-0.035 Sum_probs=74.3
Q ss_pred CEEEEEeC------CCeEEEEeCCCCceeEEeecCCcC-------------------------------------e-eEE
Q 005277 434 DFILSSSA------DTTIRLWSTKLNANLVCYKGHNYP-------------------------------------V-WDV 469 (704)
Q Consensus 434 ~~l~s~s~------Dg~I~lwd~~~~~~~~~~~~h~~~-------------------------------------V-~~v 469 (704)
..++.++. ++.|..+|..+++.+..+...... + ..+
T Consensus 161 g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~ 240 (571)
T 2ad6_A 161 DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWY 240 (571)
T ss_dssp TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCC
T ss_pred CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeE
Confidence 34555554 789999999999998876532211 1 135
Q ss_pred EEcCCCCEEEEEeCC----------------CeEEEEECCCCceeEEeccCCC---------CeeEEEEcCCCC---EEE
Q 005277 470 QFNPQGHYFASSSHD----------------RTARIWSMDRIQPLRIMAGHLS---------DVDCVRWHINCN---YIA 521 (704)
Q Consensus 470 ~~sp~~~~l~sgs~d----------------g~i~lwd~~~~~~~~~~~~~~~---------~V~~v~~~p~~~---~l~ 521 (704)
++.+....++.++.+ +.|..+|.++++.+..+..... ...-+...++|+ .++
T Consensus 241 a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~ 320 (571)
T 2ad6_A 241 AYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLS 320 (571)
T ss_dssp EEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEE
T ss_pred EEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEE
Confidence 666766666666532 3699999999998877753211 111122224674 677
Q ss_pred EEECCCcEEEEeCCCCcEEEEee
Q 005277 522 TGSSDKTVRLWDVSSGECVRIFI 544 (704)
Q Consensus 522 tgs~dg~I~iwd~~~~~~~~~~~ 544 (704)
.++.+|.++++|..+|+.+..+.
T Consensus 321 ~~~~~G~l~~lD~~tG~~~w~~~ 343 (571)
T 2ad6_A 321 HIDRNGILYTLNRENGNLIVAEK 343 (571)
T ss_dssp EECTTSEEEEEETTTCCEEEEEE
T ss_pred EeCCCcEEEEEECCCCCEEeeec
Confidence 88899999999999999887654
No 254
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.53 E-value=1.1e-05 Score=79.87 Aligned_cols=200 Identities=13% Similarity=0.121 Sum_probs=130.2
Q ss_pred eeEEeecCCcC--eeEEEEcCCCCEEEEEeCCC--eEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEE-CCCcE
Q 005277 455 NLVCYKGHNYP--VWDVQFNPQGHYFASSSHDR--TARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS-SDKTV 529 (704)
Q Consensus 455 ~~~~~~~h~~~--V~~v~~sp~~~~l~sgs~dg--~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~I 529 (704)
.+..+ .|... ...+.|+ ++.++.+.+.+| .|+.+|+++++.++.+.... ........+.++.|+... .++.+
T Consensus 33 vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v 109 (262)
T 3nol_A 33 IVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLG 109 (262)
T ss_dssp EEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEE
T ss_pred EEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEE
Confidence 34455 35433 4788998 677777777766 89999999999888876433 333322233455665554 58899
Q ss_pred EEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecCC--Ccee---eeeeeeeeehcc
Q 005277 530 RLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH--TSCV---WTLAYRFLLLVT 604 (704)
Q Consensus 530 ~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~h--~~~V---~sl~~~~~~~~~ 604 (704)
.+||..+.+.+..+.... ....+++||+.|+.+..++.|.++|..+.+.+..+... ..++ ..+.|
T Consensus 110 ~v~D~~t~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~------- 179 (262)
T 3nol_A 110 FVWNIRNLRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEW------- 179 (262)
T ss_dssp EEEETTTCCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEE-------
T ss_pred EEEECccCcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEE-------
Confidence 999999999999887433 22344467888877777889999999999888777542 2232 23444
Q ss_pred ccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCccccccccccCCCCcCeE
Q 005277 605 NAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVY 684 (704)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~ 684 (704)
. +|.+.+..-.++.|.+.|..+++....+....-... ...........+
T Consensus 180 ---------------------------~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~---~~~~~~~~~vlN 228 (262)
T 3nol_A 180 ---------------------------V-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAE---AGPLPSPIDVLN 228 (262)
T ss_dssp ---------------------------E-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGG---SCSCCSSCCCEE
T ss_pred ---------------------------E-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccc---cccccCcCCceE
Confidence 3 566666555788999999999887654432110000 000112234568
Q ss_pred EEEEccCCc-EEEEe
Q 005277 685 SLQFSRRNL-LFAAG 698 (704)
Q Consensus 685 ~l~fs~~g~-~La~g 698 (704)
.++|+|++. ++++|
T Consensus 229 GIA~dp~~~~lfVTG 243 (262)
T 3nol_A 229 GIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEEEETTTTEEEEEE
T ss_pred EEEEcCCCCEEEEEC
Confidence 999999765 45554
No 255
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.51 E-value=0.00011 Score=75.45 Aligned_cols=226 Identities=10% Similarity=0.029 Sum_probs=134.9
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCC--eEEEEECCCCceeE
Q 005277 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR--TARIWSMDRIQPLR 499 (704)
Q Consensus 422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg--~i~lwd~~~~~~~~ 499 (704)
....+++|+++++++++...++.|..||... .....+. ....+..+++.++|+++++....+ .|..++..+++...
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 4578899999999777777889999999875 3333333 234688999999999666554322 46667777766443
Q ss_pred Eecc-CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcE-EEEee---------cCCCCEEEEEEecCCCEEEEE-eC
Q 005277 500 IMAG-HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC-VRIFI---------GHRSMILSLAMSPDGRYMASG-DE 567 (704)
Q Consensus 500 ~~~~-~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~-~~~~~---------~h~~~i~~l~~spdg~~l~sg-~~ 567 (704)
.... .......++..+++..+++-..++.|+.+|..+++. +.... ..-.....+ +|++++|+.+ ..
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~ 187 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE 187 (306)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT
T ss_pred EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC
Confidence 3221 122234555555554455544688999999876532 21111 111234555 8888766554 45
Q ss_pred CCeEEEEeCCC-Cee--eeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCC
Q 005277 568 DGTIMMWDLAS-GRC--VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSAD 644 (704)
Q Consensus 568 dg~I~iwdl~~-~~~--~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~D 644 (704)
.+.|..||+.. ++. ...+.. ......+++ +++|+++++....
T Consensus 188 ~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~v----------------------------------d~dG~l~va~~~~ 232 (306)
T 2p4o_A 188 KMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAF----------------------------------DVEGNLYGATHIY 232 (306)
T ss_dssp TTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEE----------------------------------BTTCCEEEECBTT
T ss_pred CCEEEEEEeCCCCCCCccEEEec-cCCCCCeEE----------------------------------CCCCCEEEEeCCC
Confidence 68899999864 321 000000 011122222 8889888887778
Q ss_pred CcEEEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEc---cCCcEEEEeec
Q 005277 645 CTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFS---RRNLLFAAGAL 700 (704)
Q Consensus 645 g~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs---~~g~~La~gs~ 700 (704)
+.|.+++.. +... .+..+...-....+++|. +++..|.+++.
T Consensus 233 ~~V~~~~~~-G~~~-------------~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 233 NSVVRIAPD-RSTT-------------IIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp CCEEEECTT-CCEE-------------EEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred CeEEEECCC-CCEE-------------EEeecccccCCceEEEEecccCCCCEEEEECC
Confidence 899999864 3211 011222223457899998 78665555544
No 256
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.49 E-value=2.7e-05 Score=80.64 Aligned_cols=152 Identities=11% Similarity=0.022 Sum_probs=102.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeec--------------------CCcCeeEEEEcC-CCCEEEEE
Q 005277 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG--------------------HNYPVWDVQFNP-QGHYFASS 481 (704)
Q Consensus 423 ~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~--------------------h~~~V~~v~~sp-~~~~l~sg 481 (704)
...+++|.+++++++++..++.|..|+..++... .+.. ....+..+++.+ +++ ++++
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~ 97 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIV 97 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEE
Confidence 3567889999987888888999999998765432 2221 012468899998 554 5555
Q ss_pred eCCCeEEEEECCCCceeEEecc-----CCCCeeEEEEcC-CCCEEEEEEC-----------------CCcEEEEeCCCCc
Q 005277 482 SHDRTARIWSMDRIQPLRIMAG-----HLSDVDCVRWHI-NCNYIATGSS-----------------DKTVRLWDVSSGE 538 (704)
Q Consensus 482 s~dg~i~lwd~~~~~~~~~~~~-----~~~~V~~v~~~p-~~~~l~tgs~-----------------dg~I~iwd~~~~~ 538 (704)
...+.+..+|.+++.. ..+.. .......+++.+ +|++.++-.. ++.|..||..+++
T Consensus 98 d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 176 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE 176 (322)
T ss_dssp ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence 5556688888775432 22221 123467899999 8877666432 3678899987776
Q ss_pred EEEEeecCCCCEEEEEEecCCCEEEEE-eCCCeEEEEeCCC
Q 005277 539 CVRIFIGHRSMILSLAMSPDGRYMASG-DEDGTIMMWDLAS 578 (704)
Q Consensus 539 ~~~~~~~h~~~i~~l~~spdg~~l~sg-~~dg~I~iwdl~~ 578 (704)
....... -.....++++|+|++|+.+ ...+.|.+|++..
T Consensus 177 ~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~ 216 (322)
T 2fp8_A 177 TTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEG 216 (322)
T ss_dssp EEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred EEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence 4432221 2345679999999876655 5568999999875
No 257
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.46 E-value=5e-05 Score=85.48 Aligned_cols=104 Identities=10% Similarity=-0.012 Sum_probs=73.1
Q ss_pred CCCeEEEEeCCCCceeEEeecCCcC-------------------------------------ee-EEEEcCCCCEEEEEe
Q 005277 441 ADTTIRLWSTKLNANLVCYKGHNYP-------------------------------------VW-DVQFNPQGHYFASSS 482 (704)
Q Consensus 441 ~Dg~I~lwd~~~~~~~~~~~~h~~~-------------------------------------V~-~v~~sp~~~~l~sgs 482 (704)
.+|.|+.+|..+++.+..+...... +| .+++.+....++.++
T Consensus 180 ~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~ 259 (599)
T 1w6s_A 180 VRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGT 259 (599)
T ss_dssp CCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEEC
T ss_pred CCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeC
Confidence 3799999999999998777633211 11 345667777777776
Q ss_pred CC----------------CeEEEEECCCCceeEEeccCCCCe---------eEEEEc-CCC---CEEEEEECCCcEEEEe
Q 005277 483 HD----------------RTARIWSMDRIQPLRIMAGHLSDV---------DCVRWH-INC---NYIATGSSDKTVRLWD 533 (704)
Q Consensus 483 ~d----------------g~i~lwd~~~~~~~~~~~~~~~~V---------~~v~~~-p~~---~~l~tgs~dg~I~iwd 533 (704)
.+ +.|..+|.++++.+..+....... .-+... .+| ..++.++.+|.++++|
T Consensus 260 g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD 339 (599)
T 1w6s_A 260 GNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLD 339 (599)
T ss_dssp CCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEE
T ss_pred CCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEE
Confidence 55 389999999999887776432211 112222 467 5677788999999999
Q ss_pred CCCCcEEEEee
Q 005277 534 VSSGECVRIFI 544 (704)
Q Consensus 534 ~~~~~~~~~~~ 544 (704)
..+|+.+....
T Consensus 340 ~~tG~~lw~~~ 350 (599)
T 1w6s_A 340 RTDGALVSANK 350 (599)
T ss_dssp TTTCCEEEEEE
T ss_pred CCCCCEeeccc
Confidence 99999887654
No 258
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.45 E-value=1.3e-05 Score=91.84 Aligned_cols=154 Identities=10% Similarity=0.114 Sum_probs=108.1
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEeecCCc-CeeEEEEcC--CCCEEEEEeC------CCeEEEEECCCCceeEEecc
Q 005277 433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNY-PVWDVQFNP--QGHYFASSSH------DRTARIWSMDRIQPLRIMAG 503 (704)
Q Consensus 433 ~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~-~V~~v~~sp--~~~~l~sgs~------dg~i~lwd~~~~~~~~~~~~ 503 (704)
+..++.++.|+.|..+|..+++.+..+..... ....+..+| .+..+++++. +|.|..+|.++++.+..+..
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 196 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT 196 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence 56788888999999999999999888764211 001111112 1334555543 58999999999998877642
Q ss_pred CC-------------------------------CCeeEEEEcCCCCEEEEEECCC-------------------cEEEEe
Q 005277 504 HL-------------------------------SDVDCVRWHINCNYIATGSSDK-------------------TVRLWD 533 (704)
Q Consensus 504 ~~-------------------------------~~V~~v~~~p~~~~l~tgs~dg-------------------~I~iwd 533 (704)
.. .....+++.|....+++++.++ .|..+|
T Consensus 197 ~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD 276 (668)
T 1kv9_A 197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR 276 (668)
T ss_dssp SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred cCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEc
Confidence 10 0112468888888998888776 399999
Q ss_pred CCCCcEEEEeec--CC-------CCEEEEEEecCCC---EEEEEeCCCeEEEEeCCCCeeeeeec
Q 005277 534 VSSGECVRIFIG--HR-------SMILSLAMSPDGR---YMASGDEDGTIMMWDLASGRCVTPLM 586 (704)
Q Consensus 534 ~~~~~~~~~~~~--h~-------~~i~~l~~spdg~---~l~sg~~dg~I~iwdl~~~~~~~~~~ 586 (704)
..+|+.+..+.. |. .+.....+..+|+ .++.++.+|.++++|..+|+.+....
T Consensus 277 ~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~ 341 (668)
T 1kv9_A 277 PDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEK 341 (668)
T ss_dssp TTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred CCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccc
Confidence 999999988764 22 2333334445776 68899999999999999999886553
No 259
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.44 E-value=2.5e-05 Score=91.04 Aligned_cols=193 Identities=9% Similarity=0.035 Sum_probs=113.3
Q ss_pred CEEEEEEc-CCCCEEEEEeCC-C----cEEEEEcccC-CccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277 353 GLNCASIS-QDGSLVAGGFSD-S----SLKVWDMAKL-GQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (704)
Q Consensus 353 ~V~~~~fs-~dg~~lasg~~d-g----~I~iwdl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (704)
.+...+|| |||++||.+... | .|+++|+.+. ... ... + .....
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l------------------------~~~---~---~~~~~ 224 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI------------------------ADK---V---SGTNG 224 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC------------------------CCC---E---EEECS
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC------------------------Ccc---c---cCcee
Confidence 57889999 999999876542 3 4899998762 100 000 0 11134
Q ss_pred EEEEcCCCCEEEEEeCC-----CeEEEEeCCCCce--eEEeec-CCcCeeEEEEcCCCCEEEEEe---CCCeEEEEECCC
Q 005277 426 SASFSPLGDFILSSSAD-----TTIRLWSTKLNAN--LVCYKG-HNYPVWDVQFNPQGHYFASSS---HDRTARIWSMDR 494 (704)
Q Consensus 426 ~l~~sp~~~~l~s~s~D-----g~I~lwd~~~~~~--~~~~~~-h~~~V~~v~~sp~~~~l~sgs---~dg~i~lwd~~~ 494 (704)
+++|+||++.|+..+.| ..|.++++.++.. ...+.. .......+.|+|+|++|+..+ ....|.++|+.+
T Consensus 225 ~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~ 304 (751)
T 2xe4_A 225 EIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK 304 (751)
T ss_dssp CCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred eEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence 68899999988866654 3688888887642 233332 233456889999999988765 344688889887
Q ss_pred Cc-ee--EEec-cCCCCeeEEEEcCCCCEEEEEECC----CcEEEEeCCCCcEEEE-eecCCC--CEEEEEEecCCCEEE
Q 005277 495 IQ-PL--RIMA-GHLSDVDCVRWHINCNYIATGSSD----KTVRLWDVSSGECVRI-FIGHRS--MILSLAMSPDGRYMA 563 (704)
Q Consensus 495 ~~-~~--~~~~-~~~~~V~~v~~~p~~~~l~tgs~d----g~I~iwd~~~~~~~~~-~~~h~~--~i~~l~~spdg~~l~ 563 (704)
+. .. +.+. ........+.|+..+.+++....+ ..|..+|+.++..... +..+.. .+..+.+. .+.+++
T Consensus 305 ~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~ 383 (751)
T 2xe4_A 305 GNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVV 383 (751)
T ss_dssp CTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEE
T ss_pred CCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEE
Confidence 52 22 3333 334455556655444344444333 3577778765322222 233443 34445544 234455
Q ss_pred EEeCCCe--EEEEeC
Q 005277 564 SGDEDGT--IMMWDL 576 (704)
Q Consensus 564 sg~~dg~--I~iwdl 576 (704)
+...+|. |.++|+
T Consensus 384 ~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 384 AGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEETTEEEEEEEEC
T ss_pred EEEeCCEEEEEEEec
Confidence 6667775 455564
No 260
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.43 E-value=1.3e-05 Score=79.35 Aligned_cols=155 Identities=13% Similarity=0.040 Sum_probs=113.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCee--EEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe
Q 005277 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVW--DVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM 501 (704)
Q Consensus 424 V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~--~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~ 501 (704)
..++.|+ ++.+..+.+.+|.|+++|+.+++.+..+ -. .... .+++.. ++.++..-.++.+.+||..+.+.+..+
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti 132 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTT 132 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEE
Confidence 4688887 3556668888899999999999988777 22 2332 355543 344444457899999999999999888
Q ss_pred ccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCC-----CCEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 005277 502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-----SMILSLAMSPDGRYMASGDEDGTIMMWDL 576 (704)
Q Consensus 502 ~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-----~~i~~l~~spdg~~l~sg~~dg~I~iwdl 576 (704)
.... .-..++ +++..|+.+..++.|.++|..+.+.+..+.... ..++.+.|. +|+..+..-.++.|.+.|.
T Consensus 133 ~~~~-eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp 208 (268)
T 3nok_A 133 RYSG-EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDP 208 (268)
T ss_dssp ECSS-CCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECT
T ss_pred eCCC-ceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeC
Confidence 7432 223444 567888888778999999999999888765322 245677887 7865555557889999999
Q ss_pred CCCeeeeeec
Q 005277 577 ASGRCVTPLM 586 (704)
Q Consensus 577 ~~~~~~~~~~ 586 (704)
.+++.+..+.
T Consensus 209 ~TG~V~~~Id 218 (268)
T 3nok_A 209 ATGTVVGVID 218 (268)
T ss_dssp TTCBEEEEEE
T ss_pred CCCcEEEEEE
Confidence 9999887764
No 261
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.43 E-value=0.0016 Score=67.42 Aligned_cols=268 Identities=12% Similarity=0.053 Sum_probs=144.6
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEE
Q 005277 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (704)
Q Consensus 350 ~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 429 (704)
....+.++.|.+++..+|+| ..|.| +...+......... .........+.++.|
T Consensus 34 ~~~~~~~v~~~~~~~~~~~G-~~g~i-~~s~DgG~tW~~~~------------------------~~~~~~~~~~~~i~~ 87 (327)
T 2xbg_A 34 TTATILDMSFIDRHHGWLVG-VNATL-METRDGGQTWEPRT------------------------LVLDHSDYRFNSVSF 87 (327)
T ss_dssp CSSCEEEEEESSSSCEEEEE-TTTEE-EEESSTTSSCEECC------------------------CCCSCCCCEEEEEEE
T ss_pred CCCcEEEEEECCCCcEEEEc-CCCeE-EEeCCCCCCCeECC------------------------CCCCCCCccEEEEEe
Confidence 34579999998888888865 56654 33322211100000 000112346888999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCceeEEee---cCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCcee-EEeccCC
Q 005277 430 SPLGDFILSSSADTTIRLWSTKLNANLVCYK---GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL-RIMAGHL 505 (704)
Q Consensus 430 sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~---~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~-~~~~~~~ 505 (704)
.+ +. ++.++.+|.|.. ..+.++.-.... .+...+..+.+.+++..++++ .+|.+.. ..+.++.- ....+..
T Consensus 88 ~~-~~-~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~ 162 (327)
T 2xbg_A 88 QG-NE-GWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAI 162 (327)
T ss_dssp ET-TE-EEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCC
T ss_pred cC-Ce-EEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCC
Confidence 86 44 444455665544 344343322222 233457788887777766655 4554422 23333322 2223455
Q ss_pred CCeeEEEEcCCCCEEEEEECCCcEEEEeC--CCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeee
Q 005277 506 SDVDCVRWHINCNYIATGSSDKTVRLWDV--SSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583 (704)
Q Consensus 506 ~~V~~v~~~p~~~~l~tgs~dg~I~iwd~--~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~ 583 (704)
..+..+.+.|++.+++++...+..+-+|- .+-+.+ -......+..+.+.+++..++ ++.+|.+.+++...++.-.
T Consensus 163 ~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~--~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~ 239 (327)
T 2xbg_A 163 GVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPH--NRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWG 239 (327)
T ss_dssp CCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEE--ECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEEC
T ss_pred cceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeEC--CCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeE
Confidence 67889999999888877654333333442 222232 224456789999999987654 5567888777433233322
Q ss_pred eec-C---CCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCcccc
Q 005277 584 PLM-G---HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVL 659 (704)
Q Consensus 584 ~~~-~---h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~ 659 (704)
.+. + +...+.++.+ .+++.++++|. +|.| ++..+.+.
T Consensus 240 ~~~~~~~~~~~~~~~v~~----------------------------------~~~~~~~~~g~-~g~i-~~S~DgG~--- 280 (327)
T 2xbg_A 240 ELLSPLRRNSVGFLDLAY----------------------------------RTPNEVWLAGG-AGAL-LCSQDGGQ--- 280 (327)
T ss_dssp CCBCTTSSCCSCEEEEEE----------------------------------SSSSCEEEEES-TTCE-EEESSTTS---
T ss_pred eccCCcccCCcceEEEEe----------------------------------cCCCEEEEEeC-CCeE-EEeCCCCc---
Confidence 221 1 2234566666 66677666654 6766 34444332
Q ss_pred ccccccCccccccccccCCCCcCeEEEEEccCCcEEEEee
Q 005277 660 KTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 699 (704)
Q Consensus 660 ~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs 699 (704)
.+..+.........++++.|.+++.++++|.
T Consensus 281 ---------tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~ 311 (327)
T 2xbg_A 281 ---------TWQQDVDVKKVPSNFYKILFFSPDQGFILGQ 311 (327)
T ss_dssp ---------SCEECGGGTTSSSCCCEEEEEETTEEEEECS
T ss_pred ---------ccEEcCccCCCCCCeEEEEEECCCceEEEcC
Confidence 1222222112235678899987777666654
No 262
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.43 E-value=4.9e-05 Score=74.46 Aligned_cols=159 Identities=11% Similarity=0.004 Sum_probs=112.9
Q ss_pred cCeEEEEEcCCCCEEEEEeCC--CeEEEEeCCCCceeEEeecCCcCe-eEEEEcCCCCEEEEEeCCCeEEEEECCCCcee
Q 005277 422 GPVYSASFSPLGDFILSSSAD--TTIRLWSTKLNANLVCYKGHNYPV-WDVQFNPQGHYFASSSHDRTARIWSMDRIQPL 498 (704)
Q Consensus 422 ~~V~~l~~sp~~~~l~s~s~D--g~I~lwd~~~~~~~~~~~~h~~~V-~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~ 498 (704)
.-..++.|++ +.+..+.+.+ +.|+.+|+.+++.+.......... -.+++. .++.+...-.++.+.+||.++.+.+
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl~~~ 98 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEGFVYDLATLTPR 98 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEEEEEECCcCcEE
Confidence 3466899986 5555566665 489999999999988776433221 234443 2344444457899999999999999
Q ss_pred EEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCC-----CCEEEEEEecCCCEEEEEeCCCeEEE
Q 005277 499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-----SMILSLAMSPDGRYMASGDEDGTIMM 573 (704)
Q Consensus 499 ~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-----~~i~~l~~spdg~~l~sg~~dg~I~i 573 (704)
..+..... =..++ +++..|+.+..++.|.++|..+.+.++.+.... ..++.+.|. +|+..+..-.+..|.+
T Consensus 99 ~ti~~~~~-Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~v 174 (243)
T 3mbr_X 99 ARFRYPGE-GWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIAR 174 (243)
T ss_dssp EEEECSSC-CCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEE
T ss_pred EEEeCCCC-ceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEE
Confidence 88874332 23444 567777777778899999999998888775422 345667776 7776655556889999
Q ss_pred EeCCCCeeeeeec
Q 005277 574 WDLASGRCVTPLM 586 (704)
Q Consensus 574 wdl~~~~~~~~~~ 586 (704)
.|..+++.+..+.
T Consensus 175 IDp~tG~V~~~id 187 (243)
T 3mbr_X 175 IDPASGKVVAWID 187 (243)
T ss_dssp ECTTTCBEEEEEE
T ss_pred EECCCCCEEEEEE
Confidence 9999999887764
No 263
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.42 E-value=0.00029 Score=73.83 Aligned_cols=158 Identities=11% Similarity=-0.019 Sum_probs=106.3
Q ss_pred cCeEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCC-CCEEEEEeCCCeEEEEECCCCceeE
Q 005277 422 GPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRIQPLR 499 (704)
Q Consensus 422 ~~V~~l~~sp~~~~l~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~-~~~l~sgs~dg~i~lwd~~~~~~~~ 499 (704)
..+.+++|++.+..|+ +-...+.|..+++..................+++.+. +.++++-...+.|.+.+++......
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 152 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 152 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence 4578999998766665 5456788999999866544433333344578999874 5555666677899999998665444
Q ss_pred EeccCCCCeeEEEEcCCCCEEEEEE-CC-CcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEe-CCCeEEEEeC
Q 005277 500 IMAGHLSDVDCVRWHINCNYIATGS-SD-KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDL 576 (704)
Q Consensus 500 ~~~~~~~~V~~v~~~p~~~~l~tgs-~d-g~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~-~dg~I~iwdl 576 (704)
...........++++|.+..|+... .. +.|..+++............-.....++++|++..|+.+. ..+.|..+|+
T Consensus 153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~ 232 (349)
T 3v64_C 153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANL 232 (349)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeC
Confidence 4444456678999999666555544 44 7788888764332222222334678999998766665554 5678999998
Q ss_pred CCC
Q 005277 577 ASG 579 (704)
Q Consensus 577 ~~~ 579 (704)
...
T Consensus 233 dG~ 235 (349)
T 3v64_C 233 DGS 235 (349)
T ss_dssp TSC
T ss_pred CCC
Confidence 653
No 264
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.36 E-value=0.00022 Score=70.72 Aligned_cols=168 Identities=8% Similarity=0.084 Sum_probs=115.6
Q ss_pred eccCCccCeEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeec-CCcCeeEEEEcCCCCEEEEEeCCCeEEEEECC
Q 005277 416 LYQGHSGPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIWSMD 493 (704)
Q Consensus 416 ~~~~h~~~V~~l~~sp~~~~l~-s~s~Dg~I~lwd~~~~~~~~~~~~-h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~ 493 (704)
.+.+-.+.+.+++|+|++..|+ +...++.|...|.. ++.+..+.- -....-.|++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 4556667899999999877555 57778889999998 777776642 23567789999999877776677899999886
Q ss_pred CCcee---EEec------cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC---CCcEEEEee-------cCCCCEEEEE
Q 005277 494 RIQPL---RIMA------GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS---SGECVRIFI-------GHRSMILSLA 554 (704)
Q Consensus 494 ~~~~~---~~~~------~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~---~~~~~~~~~-------~h~~~i~~l~ 554 (704)
....+ .... ........++|+|.++.|+++.......+|.+. .+..+.... .+...+.+++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 54422 2221 133456899999999888887766555555553 111222221 1234578999
Q ss_pred EecC-CCEEEEEeCCCeEEEEeCCCCeeeeee
Q 005277 555 MSPD-GRYMASGDEDGTIMMWDLASGRCVTPL 585 (704)
Q Consensus 555 ~spd-g~~l~sg~~dg~I~iwdl~~~~~~~~~ 585 (704)
++|. |++++....+..+.++|.. |+.+..+
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~ 210 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEM 210 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTT-CCEEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEE
Confidence 9995 5667777788899999965 5555544
No 265
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.36 E-value=0.00011 Score=72.06 Aligned_cols=200 Identities=14% Similarity=0.090 Sum_probs=128.2
Q ss_pred eeEEeecCC--cCeeEEEEcCCCCEEEEEeCC--CeEEEEECCCCceeEEeccCCCCe-eEEEEcCCCCEEEE-EECCCc
Q 005277 455 NLVCYKGHN--YPVWDVQFNPQGHYFASSSHD--RTARIWSMDRIQPLRIMAGHLSDV-DCVRWHINCNYIAT-GSSDKT 528 (704)
Q Consensus 455 ~~~~~~~h~--~~V~~v~~sp~~~~l~sgs~d--g~i~lwd~~~~~~~~~~~~~~~~V-~~v~~~p~~~~l~t-gs~dg~ 528 (704)
.+..+ .|. .-...+.|++ +.++.+.+.+ ..|+.+|+.+++.++......... ..+++. ++.|+. .-.++.
T Consensus 11 v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~ 86 (243)
T 3mbr_X 11 VVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHE 86 (243)
T ss_dssp EEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSE
T ss_pred EEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCE
Confidence 34445 454 3466899986 5566666654 489999999999988776433221 234443 444544 446889
Q ss_pred EEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeecC--CCce---eeeeeeeeeehc
Q 005277 529 VRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG--HTSC---VWTLAYRFLLLV 603 (704)
Q Consensus 529 I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~~--h~~~---V~sl~~~~~~~~ 603 (704)
+.+||..+.+.+..+...... ..+++++..|+.+..++.|.++|..+.+.+.++.. +..+ +..+.|
T Consensus 87 v~v~D~~tl~~~~ti~~~~~G---wglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~------ 157 (243)
T 3mbr_X 87 GFVYDLATLTPRARFRYPGEG---WALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEW------ 157 (243)
T ss_dssp EEEEETTTTEEEEEEECSSCC---CEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE------
T ss_pred EEEEECCcCcEEEEEeCCCCc---eEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEE------
Confidence 999999999999988743322 33446788777777899999999999988877753 2222 223333
Q ss_pred cccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCccccccccccCcccccccccc-CCCCcC
Q 005277 604 TNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTL-PTKSTP 682 (704)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~ 682 (704)
. +|.+.+..-.+..|.+.|..+++....+.-..-... .... ......
T Consensus 158 ----------------------------~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~---~~~~~~~~~~v 205 (243)
T 3mbr_X 158 ----------------------------V-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPD---ADALTDSTNDV 205 (243)
T ss_dssp ----------------------------E-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTT---TTSCCCTTSSC
T ss_pred ----------------------------e-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccc---cccccCCcCCc
Confidence 2 566565555678999999999887655432210000 0000 123346
Q ss_pred eEEEEEccCC-cEEEEee
Q 005277 683 VYSLQFSRRN-LLFAAGA 699 (704)
Q Consensus 683 V~~l~fs~~g-~~La~gs 699 (704)
.+.++|+|++ +++++|-
T Consensus 206 lNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 206 LNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEEEEETTTTEEEEEET
T ss_pred eEEEEEcCCCCEEEEECC
Confidence 7899999965 5666653
No 266
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.35 E-value=0.00049 Score=80.48 Aligned_cols=280 Identities=12% Similarity=0.032 Sum_probs=162.3
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEc
Q 005277 351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (704)
Q Consensus 351 ~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 430 (704)
...|.++...++|. |..|+..+-|.+++............ ......... ....-....|.++...
T Consensus 257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~--------~f~~~~~~~------~~~~l~~~~v~~i~~D 321 (781)
T 3v9f_A 257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQI--------RFEFIREGD------NNYSLSNASARYIFQD 321 (781)
T ss_dssp CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC-----------------CEEECBCS------STTSBSSSCEEEEEEC
T ss_pred CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeecc--------ccccccCCC------CCCCCCCCeEEEEEEe
Confidence 35699999988876 55566645677888654211100000 000000000 0001134579999998
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCceeEEee---------cCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe
Q 005277 431 PLGDFILSSSADTTIRLWSTKLNANLVCYK---------GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM 501 (704)
Q Consensus 431 p~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~---------~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~ 501 (704)
++|. |..|+.++-|..|+..+........ .....|.++...++|. +..|+.++-+..|+..+.......
T Consensus 322 ~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~ 399 (781)
T 3v9f_A 322 SFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNK 399 (781)
T ss_dssp SSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-
T ss_pred CCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEcc
Confidence 8886 5567766778999887554322110 1235689999887776 667776677889998654222111
Q ss_pred ---ccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEee--cCCCCEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 005277 502 ---AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI--GHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576 (704)
Q Consensus 502 ---~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~--~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl 576 (704)
......|.++...+++. |.+|+.++.+..+|..+++...... .....|.++...++|.+.+ |+. +-|.+||.
T Consensus 400 ~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~ 476 (781)
T 3v9f_A 400 ENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDL 476 (781)
T ss_dssp ----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEES
T ss_pred CCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeC
Confidence 12335688888877765 5557777789999988776543221 1346799999988887544 555 45889998
Q ss_pred CCCeeeeeecCC-----CceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEe
Q 005277 577 ASGRCVTPLMGH-----TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWD 651 (704)
Q Consensus 577 ~~~~~~~~~~~h-----~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd 651 (704)
.+++........ ...|.++.. .++|.+.+ |+.++-|..||
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~i~~i~~----------------------------------d~~g~lWi-gt~~~Gl~~~~ 521 (781)
T 3v9f_A 477 ASKKVIHHYDTSNSQLLENFVRSIAQ----------------------------------DSEGRFWI-GTFGGGVGIYT 521 (781)
T ss_dssp SSSSCCEEECTTTSSCSCSCEEEEEE----------------------------------CTTCCEEE-EESSSCEEEEC
T ss_pred CCCeEEecccCcccccccceeEEEEE----------------------------------cCCCCEEE-EEcCCCEEEEe
Confidence 776543322111 234555544 67776555 44434477788
Q ss_pred CCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEE
Q 005277 652 VTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAA 697 (704)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~ 697 (704)
..+.... .... -.. -....|.++...++|.+.++
T Consensus 522 ~~~~~~~-~~~~---------~~~--l~~~~i~~i~~d~~g~lWi~ 555 (781)
T 3v9f_A 522 PDMQLVR-KFNQ---------YEG--FCSNTINQIYRSSKGQMWLA 555 (781)
T ss_dssp TTCCEEE-EECT---------TTT--CSCSCEEEEEECTTSCEEEE
T ss_pred CCCCeEE-EccC---------CCC--CCCCeeEEEEECCCCCEEEE
Confidence 7654321 0000 001 12456888988888876654
No 267
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.34 E-value=0.00037 Score=81.48 Aligned_cols=275 Identities=12% Similarity=0.061 Sum_probs=161.4
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEc
Q 005277 351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (704)
Q Consensus 351 ~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 430 (704)
...|.++...++|. |..|+.++-|..|+............ +.. . ....-....|.++...
T Consensus 312 ~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~---------------~~~--~--~~~~l~~~~v~~i~~d 371 (781)
T 3v9f_A 312 NASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYS---------------PTQ--M--NESSLSNKVVSSVCDD 371 (781)
T ss_dssp SSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC-------------------C--C--CSSCCSSSCEEEEEEC
T ss_pred CCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccC---------------ccc--c--ccCCCCCcceEEEEEc
Confidence 35699999998887 56677777788887653211100000 000 0 0000123568999988
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCceeEEe---ecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec--cCC
Q 005277 431 PLGDFILSSSADTTIRLWSTKLNANLVCY---KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA--GHL 505 (704)
Q Consensus 431 p~~~~l~s~s~Dg~I~lwd~~~~~~~~~~---~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~--~~~ 505 (704)
+++. |..|+.++-|..|+..++...... ......|.++...++|. +..|+.++-+..++..+++...... ...
T Consensus 372 ~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~ 449 (781)
T 3v9f_A 372 GQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNEL 449 (781)
T ss_dssp TTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCC
T ss_pred CCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCC
Confidence 8776 556665666888987654322111 12345789999887776 5557777789999887664332221 134
Q ss_pred CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecC-----CCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCe
Q 005277 506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH-----RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR 580 (704)
Q Consensus 506 ~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h-----~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~ 580 (704)
..|.++...+++. |..|+. +.|..||..+++........ ...|.++...++|++.+ |+.++-|..||..+++
T Consensus 450 ~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~ 526 (781)
T 3v9f_A 450 LDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQL 526 (781)
T ss_dssp CCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCE
T ss_pred CeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCe
Confidence 5788888877765 555666 56899998877654433222 35799999999888655 4443347779987664
Q ss_pred eeeeecC-C---CceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEEEeCCCCc
Q 005277 581 CVTPLMG-H---TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTST 656 (704)
Q Consensus 581 ~~~~~~~-h---~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~iWd~~~~~ 656 (704)
.. .+.. + ...|.++.. .++|.+.++. .+|.|..||..++.
T Consensus 527 ~~-~~~~~~~l~~~~i~~i~~----------------------------------d~~g~lWi~T-~~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 527 VR-KFNQYEGFCSNTINQIYR----------------------------------SSKGQMWLAT-GEGLVCFPSARNFD 570 (781)
T ss_dssp EE-EECTTTTCSCSCEEEEEE----------------------------------CTTSCEEEEE-TTEEEEESCTTTCC
T ss_pred EE-EccCCCCCCCCeeEEEEE----------------------------------CCCCCEEEEE-CCCceEEECCCCCc
Confidence 33 2321 1 234555544 6777755544 46665888876653
Q ss_pred cccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEe
Q 005277 657 KVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAG 698 (704)
Q Consensus 657 ~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~g 698 (704)
.. ..... .-+ ....|.++...++|.+.+++
T Consensus 571 ~~-~~~~~---------~gl--~~~~i~~i~~d~~g~lW~~t 600 (781)
T 3v9f_A 571 YQ-VFQRK---------EGL--PNTHIRAISEDKNGNIWAST 600 (781)
T ss_dssp CE-EECGG---------GTC--SCCCCCEEEECSSSCEEEEC
T ss_pred EE-Ecccc---------CCC--CCceEEEEEECCCCCEEEEc
Confidence 21 00000 011 12346677777777655543
No 268
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.33 E-value=0.00014 Score=81.73 Aligned_cols=104 Identities=8% Similarity=-0.079 Sum_probs=70.3
Q ss_pred CCeEEEEeCCCCceeEEeecCCcC----------------------------------------e-eEEEEcCCCCEEEE
Q 005277 442 DTTIRLWSTKLNANLVCYKGHNYP----------------------------------------V-WDVQFNPQGHYFAS 480 (704)
Q Consensus 442 Dg~I~lwd~~~~~~~~~~~~h~~~----------------------------------------V-~~v~~sp~~~~l~s 480 (704)
+|.|..+|..+++.+......... + ..+++.|....++.
T Consensus 183 ~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv 262 (582)
T 1flg_A 183 VGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIV 262 (582)
T ss_dssp BCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEE
T ss_pred CCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEE
Confidence 789999999999887765421100 0 13456666677776
Q ss_pred EeC--------------------C----CeEEEEECCCCceeEEecc--CCC----Cee-EEEEc---CCC---CEEEEE
Q 005277 481 SSH--------------------D----RTARIWSMDRIQPLRIMAG--HLS----DVD-CVRWH---INC---NYIATG 523 (704)
Q Consensus 481 gs~--------------------d----g~i~lwd~~~~~~~~~~~~--~~~----~V~-~v~~~---p~~---~~l~tg 523 (704)
++. | +.|..+|.++++.+..+.. |.. .+. -+.+. .+| ..++.+
T Consensus 263 ~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~ 342 (582)
T 1flg_A 263 GAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHA 342 (582)
T ss_dssp EECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEE
T ss_pred eCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEE
Confidence 653 2 6899999999999887753 211 111 12222 466 378889
Q ss_pred ECCCcEEEEeCCCCcEEEEeec
Q 005277 524 SSDKTVRLWDVSSGECVRIFIG 545 (704)
Q Consensus 524 s~dg~I~iwd~~~~~~~~~~~~ 545 (704)
+.+|.++++|..+|+.+..+..
T Consensus 343 ~~~G~l~~lD~~tG~~lw~~~~ 364 (582)
T 1flg_A 343 DRNGFFYVVDRSNGKLQNAFPF 364 (582)
T ss_dssp CTTSEEEEEETTTCCEEEEEES
T ss_pred CCCceEEEEECCCCCEeccccc
Confidence 9999999999999998876543
No 269
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.33 E-value=0.00049 Score=73.21 Aligned_cols=158 Identities=10% Similarity=-0.038 Sum_probs=106.7
Q ss_pred cCeEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCC-CCEEEEEeCCCeEEEEECCCCceeE
Q 005277 422 GPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRIQPLR 499 (704)
Q Consensus 422 ~~V~~l~~sp~~~~l~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~-~~~l~sgs~dg~i~lwd~~~~~~~~ 499 (704)
..+.+++|.+.+..|+ +-...+.|..+++........+.........+++.+. +.++++-...+.|.+.+++......
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~ 195 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 195 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence 4578999998666555 5556788999999866544433333334568899874 5555666667889999987655444
Q ss_pred EeccCCCCeeEEEEcCCCCEEEEEEC-C-CcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEE-eCCCeEEEEeC
Q 005277 500 IMAGHLSDVDCVRWHINCNYIATGSS-D-KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG-DEDGTIMMWDL 576 (704)
Q Consensus 500 ~~~~~~~~V~~v~~~p~~~~l~tgs~-d-g~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg-~~dg~I~iwdl 576 (704)
.+.........++++|.+..|+.... . +.|..+++............-.....|+|+|++..|+.+ ...+.|..+|+
T Consensus 196 l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~ 275 (386)
T 3v65_B 196 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANL 275 (386)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECT
T ss_pred eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeC
Confidence 44445567789999997766665543 3 678888876443333333334467899999876666555 45678999997
Q ss_pred CCC
Q 005277 577 ASG 579 (704)
Q Consensus 577 ~~~ 579 (704)
...
T Consensus 276 dG~ 278 (386)
T 3v65_B 276 DGS 278 (386)
T ss_dssp TSC
T ss_pred CCC
Confidence 643
No 270
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.31 E-value=7.1e-05 Score=74.02 Aligned_cols=185 Identities=9% Similarity=0.023 Sum_probs=124.0
Q ss_pred eCCCC--EEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEE
Q 005277 349 NTHNG--LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (704)
Q Consensus 349 ~~~~~--V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 426 (704)
.|... ...+.|+ ++.+..+.+.+|.|+++|+.+..... .. +... ----.
T Consensus 50 phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~-------------------------~~--l~~~-~FgeG 100 (268)
T 3nok_A 50 PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVW-------------------------ME--RLGN-IFAEG 100 (268)
T ss_dssp ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSE-------------------------EE--ECTT-CCEEE
T ss_pred cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEe-------------------------EE--CCCC-cceeE
Confidence 44443 4678887 46777788888999999987632211 11 1111 01123
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCC-
Q 005277 427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL- 505 (704)
Q Consensus 427 l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~- 505 (704)
+++.. ++..+..-.++.+.+||..+.+.+.++... ..-+.+++ ++..++.+..++.|.++|..+.+.+..+.-..
T Consensus 101 it~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~-~eGwGLt~--Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~ 176 (268)
T 3nok_A 101 LASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTRYS-GEGWGLCY--WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLR 176 (268)
T ss_dssp EEECS-SCEEEEESSSCEEEEEETTTTEEEEEEECS-SCCCCEEE--ETTEEEEECSSSEEEEECTTTCCEEEEEECEET
T ss_pred EEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEeCC-CceeEEec--CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCC
Confidence 44442 233334556889999999999999888743 33356664 67777777779999999999998887765322
Q ss_pred ----CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecC-------------CCCEEEEEEecCCCEEEEEeC
Q 005277 506 ----SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH-------------RSMILSLAMSPDGRYMASGDE 567 (704)
Q Consensus 506 ----~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h-------------~~~i~~l~~spdg~~l~sg~~ 567 (704)
..++.+.|. +|...+....+..|.+.|..+|+.+..+.-. ..-.+.|+++|+++.|++.+.
T Consensus 177 g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 177 GQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp TEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 234567776 6754444446889999999999998876521 135789999998766555543
No 271
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.30 E-value=3e-05 Score=90.27 Aligned_cols=153 Identities=13% Similarity=0.131 Sum_probs=97.4
Q ss_pred CeEEEEEc-CCCCEEEEE-eCCC----eEEEEeCCCC-ceeEE-eecCCcCeeEEEEcCCCCEEEEEeCC-----CeEEE
Q 005277 423 PVYSASFS-PLGDFILSS-SADT----TIRLWSTKLN-ANLVC-YKGHNYPVWDVQFNPQGHYFASSSHD-----RTARI 489 (704)
Q Consensus 423 ~V~~l~~s-p~~~~l~s~-s~Dg----~I~lwd~~~~-~~~~~-~~~h~~~V~~v~~sp~~~~l~sgs~d-----g~i~l 489 (704)
.+...+|| |||++|+-+ +.+| +|+++|+.++ +.+.. +. ....++.|+|+|+.|+....+ ..|.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 67889999 999988743 3333 5999999988 53211 11 124578999999888777654 36888
Q ss_pred EECCCCce--eEEec-cCCCCeeEEEEcCCCCEEEEEEC---CCcEEEEeCCCC--cE-EEEee-cCCCCEEEEEEecCC
Q 005277 490 WSMDRIQP--LRIMA-GHLSDVDCVRWHINCNYIATGSS---DKTVRLWDVSSG--EC-VRIFI-GHRSMILSLAMSPDG 559 (704)
Q Consensus 490 wd~~~~~~--~~~~~-~~~~~V~~v~~~p~~~~l~tgs~---dg~I~iwd~~~~--~~-~~~~~-~h~~~i~~l~~spdg 559 (704)
+++.++.. ...+. ........+.|+|+|++|+..+. ...|+++|+.++ .. ++.+. .......++.|+..+
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~ 331 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTS 331 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTT
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCC
Confidence 88877642 23333 22334567899999999887653 346888999875 23 13333 334455555555434
Q ss_pred CEEEEEeCC----CeEEEEeCCC
Q 005277 560 RYMASGDED----GTIMMWDLAS 578 (704)
Q Consensus 560 ~~l~sg~~d----g~I~iwdl~~ 578 (704)
.+++....+ ..|..+|+.+
T Consensus 332 ~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 332 HLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp EEEEEECTTTCTTCEEEEEETTS
T ss_pred EEEEEeCCCCCCCcEEEEEcCCC
Confidence 444444333 3677778765
No 272
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.29 E-value=0.00045 Score=72.34 Aligned_cols=211 Identities=7% Similarity=-0.057 Sum_probs=133.6
Q ss_pred eeCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEE
Q 005277 348 INTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (704)
Q Consensus 348 ~~~~~~V~~~~fs~d-g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 426 (704)
......+..++|++. +.++++-...+.|..+++..... ............+
T Consensus 69 ~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~----------------------------~~~~~~~~~~p~g 120 (349)
T 3v64_C 69 LNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV----------------------------EEVVSTGLESPGG 120 (349)
T ss_dssp ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----------------------------EEEECSSCSCCCE
T ss_pred ecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCc----------------------------eEEEeCCCCCccE
Confidence 334456889999975 44555555678888888764211 0111111233467
Q ss_pred EEEcCCCCEE-EEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCE-EEEEeCC-CeEEEEECCCCceeEEecc
Q 005277 427 ASFSPLGDFI-LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY-FASSSHD-RTARIWSMDRIQPLRIMAG 503 (704)
Q Consensus 427 l~~sp~~~~l-~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~-l~sgs~d-g~i~lwd~~~~~~~~~~~~ 503 (704)
+++.+.+..| ++-...+.|.+.+++...........-....++++.|.+.. +++-... +.|..++++..........
T Consensus 121 lavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~ 200 (349)
T 3v64_C 121 LAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADT 200 (349)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCS
T ss_pred EEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEEC
Confidence 8888755555 45566789999998855444434334456789999995554 4454444 7888888876433333333
Q ss_pred CCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeee
Q 005277 504 HLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582 (704)
Q Consensus 504 ~~~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~ 582 (704)
.......++++|++..|+.+. ..+.|..+|+........+.........+++ ..+..+++-...+.|..+|..+|+.+
T Consensus 201 ~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~ 279 (349)
T 3v64_C 201 HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQ 279 (349)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSC
T ss_pred CCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCcc
Confidence 345578999998776666654 5678999998654433333334456778888 35566666667788999987777666
Q ss_pred eeecC
Q 005277 583 TPLMG 587 (704)
Q Consensus 583 ~~~~~ 587 (704)
..+..
T Consensus 280 ~~i~~ 284 (349)
T 3v64_C 280 EIIRN 284 (349)
T ss_dssp EEEEC
T ss_pred EEecc
Confidence 65543
No 273
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.28 E-value=0.002 Score=66.30 Aligned_cols=156 Identities=7% Similarity=-0.068 Sum_probs=102.7
Q ss_pred cCeEEEEEcCCCCEEE-EEeCCCeEEEEeCCC----CceeEEeecCCcCeeEEEEcCC-CCEEEEEeCCCeEEEEECCCC
Q 005277 422 GPVYSASFSPLGDFIL-SSSADTTIRLWSTKL----NANLVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRI 495 (704)
Q Consensus 422 ~~V~~l~~sp~~~~l~-s~s~Dg~I~lwd~~~----~~~~~~~~~h~~~V~~v~~sp~-~~~l~sgs~dg~i~lwd~~~~ 495 (704)
..+.+++|++.+..|+ +-...+.|..+++.. ......+...-.....+++.+. ++.+++-...+.|.+++++..
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence 4578999998766555 555678999999885 2222223222234578999874 455556567889999999865
Q ss_pred ceeEEeccCCCCeeEEEEcCCCCEEEEEECC--CcEEEEeCCCCcEEEEe-ecCCCCEEEEEEecCCCEEEEEe-CCCeE
Q 005277 496 QPLRIMAGHLSDVDCVRWHINCNYIATGSSD--KTVRLWDVSSGECVRIF-IGHRSMILSLAMSPDGRYMASGD-EDGTI 571 (704)
Q Consensus 496 ~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d--g~I~iwd~~~~~~~~~~-~~h~~~i~~l~~spdg~~l~sg~-~dg~I 571 (704)
.....+.........++++|.+..|+.+... +.|..+++. |.....+ ...-.....++++|++..|+.+. ..+.|
T Consensus 110 ~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I 188 (316)
T 1ijq_A 110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 188 (316)
T ss_dssp SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeE
Confidence 4444444344667899999976666655543 688888875 3333333 23345678999999877666554 56789
Q ss_pred EEEeCCC
Q 005277 572 MMWDLAS 578 (704)
Q Consensus 572 ~iwdl~~ 578 (704)
..+|+..
T Consensus 189 ~~~d~dg 195 (316)
T 1ijq_A 189 SSIDVNG 195 (316)
T ss_dssp EEEETTS
T ss_pred EEEecCC
Confidence 9999864
No 274
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.24 E-value=0.00054 Score=67.91 Aligned_cols=198 Identities=13% Similarity=0.113 Sum_probs=126.2
Q ss_pred eCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEE
Q 005277 349 NTHNGLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA 427 (704)
Q Consensus 349 ~~~~~V~~~~fs~dg~-~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 427 (704)
+-.+.+..++|+|++. +.++...++.|...|... ... ....+.+ ....-+|
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g-~v~--------------------------~~i~l~g-~~D~EGI 75 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNG-DLI--------------------------RTIPLDF-VKDLETI 75 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTC-CEE--------------------------EEEECSS-CSSEEEE
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCC-CEE--------------------------EEEecCC-CCChHHe
Confidence 4446799999999865 555566778777777652 100 0011122 2457788
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCcee---EEee------cCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCC---C
Q 005277 428 SFSPLGDFILSSSADTTIRLWSTKLNANL---VCYK------GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR---I 495 (704)
Q Consensus 428 ~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~---~~~~------~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~---~ 495 (704)
++.+++.++++.-.++.+.++++.....+ .... ..+...-.++|+|.++.|+++.......+|.++. .
T Consensus 76 a~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~ 155 (255)
T 3qqz_A 76 EYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSS 155 (255)
T ss_dssp EECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCS
T ss_pred EEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccC
Confidence 99988887777667788999988765432 2221 1344568999999987777776655555555541 1
Q ss_pred ceeEEec-------cCCCCeeEEEEcCCCCEE-EEEECCCcEEEEeCCCCcEEEEeecCC---------CCEEEEEEecC
Q 005277 496 QPLRIMA-------GHLSDVDCVRWHINCNYI-ATGSSDKTVRLWDVSSGECVRIFIGHR---------SMILSLAMSPD 558 (704)
Q Consensus 496 ~~~~~~~-------~~~~~V~~v~~~p~~~~l-~tgs~dg~I~iwd~~~~~~~~~~~~h~---------~~i~~l~~spd 558 (704)
..+.... .+...+.+++++|....+ +.....+.+..+|.. |+.+..+.-.. ...-.|+|.++
T Consensus 156 ~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~ 234 (255)
T 3qqz_A 156 NELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDAS 234 (255)
T ss_dssp SCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTT
T ss_pred CceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCC
Confidence 1223221 234568899999975554 455567788889965 55665554221 26789999999
Q ss_pred CCEEEEEeCCCeEEEEeC
Q 005277 559 GRYMASGDEDGTIMMWDL 576 (704)
Q Consensus 559 g~~l~sg~~dg~I~iwdl 576 (704)
|+. +..++-+.++.+.-
T Consensus 235 G~l-yIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 235 GNI-YIVSEPNRFYRFTP 251 (255)
T ss_dssp CCE-EEEETTTEEEEEEC
T ss_pred CCE-EEEcCCceEEEEEe
Confidence 984 44577776766653
No 275
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.22 E-value=0.00024 Score=76.80 Aligned_cols=151 Identities=8% Similarity=0.015 Sum_probs=93.6
Q ss_pred EEEEEEcC-CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCC
Q 005277 354 LNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL 432 (704)
Q Consensus 354 V~~~~fs~-dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 432 (704)
...++++| ++..|.+....+.|+.+++... .+..+.........++|+++
T Consensus 139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~-----------------------------~v~~~~~~~~~P~~ia~d~~ 189 (430)
T 3tc9_A 139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKE-----------------------------YVSTVYSGLSKVRTICWTHE 189 (430)
T ss_dssp CCEEEEETTEEEEEEEEEBTEEEEEEETTTT-----------------------------EEEEEECCCSCEEEEEECTT
T ss_pred CCEEEECCCCCCeEEEEeCCCcEEEEECCCC-----------------------------EEEEEecCCCCcceEEEeCC
Confidence 46788887 3444555544477888887641 11122223355789999999
Q ss_pred CCEEEEEeCC-C----eEEEEeCCCCcee--EEeecCCcCeeEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeEEec-c
Q 005277 433 GDFILSSSAD-T----TIRLWSTKLNANL--VCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPLRIMA-G 503 (704)
Q Consensus 433 ~~~l~s~s~D-g----~I~lwd~~~~~~~--~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~lwd~~~~~~~~~~~-~ 503 (704)
+++|+.+... + .+.+.+.. +... ..+.. ......++++| +|.++++-..++.|..++.+......... +
T Consensus 190 G~~lyvad~~~~~~~~~v~~~~~~-g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~ 267 (430)
T 3tc9_A 190 ADSMIITNDQNNNDRPNNYILTRE-SGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQ 267 (430)
T ss_dssp SSEEEEEECCSCTTSEEEEEEEGG-GTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred CCEEEEEeCCCCcccceEEEEeCC-Cceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcC
Confidence 9966665542 1 23334433 2221 22222 23456889999 77777766678899999998765422222 2
Q ss_pred CCCCeeEEEEcCCCCEEEEE-ECCCcEEEEeCC
Q 005277 504 HLSDVDCVRWHINCNYIATG-SSDKTVRLWDVS 535 (704)
Q Consensus 504 ~~~~V~~v~~~p~~~~l~tg-s~dg~I~iwd~~ 535 (704)
.......++|+|++++|+.+ ...+.|..++..
T Consensus 268 ~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 268 DSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred CCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 22346789999999965555 467889998765
No 276
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.20 E-value=0.00037 Score=75.30 Aligned_cols=196 Identities=10% Similarity=0.055 Sum_probs=114.7
Q ss_pred EEEEEEcCC--CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcC
Q 005277 354 LNCASISQD--GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (704)
Q Consensus 354 V~~~~fs~d--g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 431 (704)
...++|+|+ ...|..+...+.|+.++.... .+..+.+......+++|++
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g-----------------------------~v~~~~~~~~~P~giavd~ 191 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQ-----------------------------YVDIKTTNIGQCADVNFTL 191 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBTSCEEEEETTTT-----------------------------EEEEECCCCSCEEEEEECT
T ss_pred CceEEEccccCCCEEEEEeCCCCEEEEECCCC-----------------------------EEEEeecCCCCccEEEECC
Confidence 467889984 333444433388988887531 1122222334578999999
Q ss_pred CCCEEEEEeCC---C-eEEEEeCCCCce-eEEeecCCcCeeEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeEEe-cc-
Q 005277 432 LGDFILSSSAD---T-TIRLWSTKLNAN-LVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPLRIM-AG- 503 (704)
Q Consensus 432 ~~~~l~s~s~D---g-~I~lwd~~~~~~-~~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~lwd~~~~~~~~~~-~~- 503 (704)
+++++++.... . .+...+...+.. ...+. .......++++| +|.++++-..++.|+.++.+++.....+ ..
T Consensus 192 dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~ 270 (433)
T 4hw6_A 192 NGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMD 270 (433)
T ss_dssp TCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECS
T ss_pred CCCEEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccC
Confidence 99944444321 1 233333322211 11122 223456789999 7776666667789999999866552222 21
Q ss_pred CCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCC--CCcE--EEEeecC---------------CCCEEEEEE--------
Q 005277 504 HLSDVDCVRWHINCNYIATGS-SDKTVRLWDVS--SGEC--VRIFIGH---------------RSMILSLAM-------- 555 (704)
Q Consensus 504 ~~~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~--~~~~--~~~~~~h---------------~~~i~~l~~-------- 555 (704)
....-..++|+|++++|+.+. ..+.|+.++.. ++.. ...+.+. -.....+++
T Consensus 271 ~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~ 350 (433)
T 4hw6_A 271 TKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAG 350 (433)
T ss_dssp CCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTT
T ss_pred CCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccc
Confidence 122234699999999665554 56789998865 3321 1222221 123667888
Q ss_pred -ecCCCEEEEEeCCCeEEEEeCCCCe
Q 005277 556 -SPDGRYMASGDEDGTIMMWDLASGR 580 (704)
Q Consensus 556 -spdg~~l~sg~~dg~I~iwdl~~~~ 580 (704)
.++|.+.++-...+.|+.++. +|.
T Consensus 351 dd~~g~lyvaD~~n~~I~~~~~-~G~ 375 (433)
T 4hw6_A 351 EEDEYDFYFCDRDSHTVRVLTP-EGR 375 (433)
T ss_dssp SSCCEEEEEEETTTTEEEEECT-TSE
T ss_pred cCCCCcEEEEECCCCEEEEECC-CCC
Confidence 667777766667778888884 453
No 277
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.19 E-value=0.0007 Score=71.97 Aligned_cols=219 Identities=6% Similarity=-0.067 Sum_probs=137.6
Q ss_pred eCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEE
Q 005277 349 NTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA 427 (704)
Q Consensus 349 ~~~~~V~~~~fs~d-g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 427 (704)
........++|++. +.++++-...+.|..|++..... ............++
T Consensus 113 ~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~----------------------------~~~~~~~~~~p~gl 164 (386)
T 3v65_B 113 NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV----------------------------EEVVSTGLESPGGL 164 (386)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE----------------------------EEEECSSCSCCCCE
T ss_pred cCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc----------------------------EEEEeCCCCCccEE
Confidence 34456889999975 55555556678888888764211 01111111234677
Q ss_pred EEcCCCCEE-EEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEe-CC-CeEEEEECCCCceeEEeccC
Q 005277 428 SFSPLGDFI-LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-HD-RTARIWSMDRIQPLRIMAGH 504 (704)
Q Consensus 428 ~~sp~~~~l-~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs-~d-g~i~lwd~~~~~~~~~~~~~ 504 (704)
++.+.+..| ++-...+.|.+.+++.......+.........+++.|.+..++.+. .. +.|..++++...........
T Consensus 165 avd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~ 244 (386)
T 3v65_B 165 AVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTH 244 (386)
T ss_dssp EEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSS
T ss_pred EEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECC
Confidence 888755555 4556677899988875544444443445678999998665554443 44 68888888765444444444
Q ss_pred CCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeee
Q 005277 505 LSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583 (704)
Q Consensus 505 ~~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~ 583 (704)
......++|+|++..|+.+. ..+.|..+|+........+.........+++ ..+..+++-...+.|..+|..+|+.+.
T Consensus 245 ~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~ 323 (386)
T 3v65_B 245 LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQE 323 (386)
T ss_dssp CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCE
T ss_pred CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceE
Confidence 45578999998766666554 5678999998654433334334456778888 455666666778899999977777666
Q ss_pred eecCCCceeeeee
Q 005277 584 PLMGHTSCVWTLA 596 (704)
Q Consensus 584 ~~~~h~~~V~sl~ 596 (704)
.+.........+.
T Consensus 324 ~i~~~~~~p~gi~ 336 (386)
T 3v65_B 324 IIRNKLHFPMDIH 336 (386)
T ss_dssp EEECSCSCCCCEE
T ss_pred EEccCCCCCceEE
Confidence 6643333333343
No 278
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.18 E-value=0.0045 Score=66.02 Aligned_cols=161 Identities=7% Similarity=-0.057 Sum_probs=109.6
Q ss_pred CccCeEEEEEcCCCCEEE-EEeCCCeEEEEeCCCC----ceeEEeecCCcCeeEEEEcC-CCCEEEEEeCCCeEEEEECC
Q 005277 420 HSGPVYSASFSPLGDFIL-SSSADTTIRLWSTKLN----ANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMD 493 (704)
Q Consensus 420 h~~~V~~l~~sp~~~~l~-s~s~Dg~I~lwd~~~~----~~~~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~lwd~~ 493 (704)
....+.+++|++.+..|+ +-...+.|+.+++... .....+.........+++.+ .++++++-...+.|.+.+++
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~ 189 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 189 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence 345688999998766665 4456788999998752 22333333345677899988 55566666678899999998
Q ss_pred CCceeEEeccCCCCeeEEEEcCCCCEEEEEEC--CCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEe-CCCe
Q 005277 494 RIQPLRIMAGHLSDVDCVRWHINCNYIATGSS--DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGT 570 (704)
Q Consensus 494 ~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~--dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~-~dg~ 570 (704)
.......+.........++++|.+.+|+.... .+.|...++............-.....|+++|++..|+.+. ..+.
T Consensus 190 g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~ 269 (400)
T 3p5b_L 190 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS 269 (400)
T ss_dssp TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred CCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCE
Confidence 76655555545566889999997666666543 37899999865443333333345789999999877776664 5678
Q ss_pred EEEEeCCCCe
Q 005277 571 IMMWDLASGR 580 (704)
Q Consensus 571 I~iwdl~~~~ 580 (704)
|..+|+....
T Consensus 270 I~~~d~dG~~ 279 (400)
T 3p5b_L 270 ISSIDVNGGN 279 (400)
T ss_dssp EEEEETTSCC
T ss_pred EEEEeCCCCc
Confidence 9999986543
No 279
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.15 E-value=0.00054 Score=76.87 Aligned_cols=153 Identities=11% Similarity=0.058 Sum_probs=102.9
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEeecCCcC-eeEEEEcC--CCCEEEEEeC------CCeEEEEECCCCceeEEecc
Q 005277 433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYP-VWDVQFNP--QGHYFASSSH------DRTARIWSMDRIQPLRIMAG 503 (704)
Q Consensus 433 ~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~-V~~v~~sp--~~~~l~sgs~------dg~i~lwd~~~~~~~~~~~~ 503 (704)
+..++.++.|+.+..+|..+++.+..+...... -..+.-+| .+..+++++. ++.|..+|..+++.+..+..
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEcc
Confidence 567888889999999999999998776532200 00111112 1335555554 79999999999998876653
Q ss_pred CCCC--------------------------------------eeEEEEcCCCCEEEEEECC----------------CcE
Q 005277 504 HLSD--------------------------------------VDCVRWHINCNYIATGSSD----------------KTV 529 (704)
Q Consensus 504 ~~~~--------------------------------------V~~v~~~p~~~~l~tgs~d----------------g~I 529 (704)
.... ...+++.+....++.++.+ +.|
T Consensus 195 ~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v 274 (571)
T 2ad6_A 195 TGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTI 274 (571)
T ss_dssp SSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEE
T ss_pred CCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEE
Confidence 2111 0235667777777776642 359
Q ss_pred EEEeCCCCcEEEEeecC--C--------CCEEEEEEecCCC---EEEEEeCCCeEEEEeCCCCeeeeeec
Q 005277 530 RLWDVSSGECVRIFIGH--R--------SMILSLAMSPDGR---YMASGDEDGTIMMWDLASGRCVTPLM 586 (704)
Q Consensus 530 ~iwd~~~~~~~~~~~~h--~--------~~i~~l~~spdg~---~l~sg~~dg~I~iwdl~~~~~~~~~~ 586 (704)
..+|..+|+.+..+... . .++ -+...++|+ .++.++.+|.+.++|..+|+.+....
T Consensus 275 ~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~ 343 (571)
T 2ad6_A 275 WGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEK 343 (571)
T ss_dssp EEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeec
Confidence 99999999998877532 1 222 123335784 67788999999999999999887654
No 280
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.14 E-value=0.00041 Score=77.98 Aligned_cols=148 Identities=14% Similarity=0.126 Sum_probs=102.2
Q ss_pred EEEEeCCCeEEEEeCCCCceeEEeecCCc----CeeE-EEEcCCCCEEEEEe------CCCeEEEEECCCCceeEEeccC
Q 005277 436 ILSSSADTTIRLWSTKLNANLVCYKGHNY----PVWD-VQFNPQGHYFASSS------HDRTARIWSMDRIQPLRIMAGH 504 (704)
Q Consensus 436 l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~----~V~~-v~~sp~~~~l~sgs------~dg~i~lwd~~~~~~~~~~~~~ 504 (704)
|+.++.|+.+..+|..+++.+........ .+.+ -.+. ++ .+++++ .+|.|+.+|.++++.+..+...
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~ 201 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT 201 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence 88888999999999999999877653220 1111 0111 44 455554 3799999999999988776532
Q ss_pred CCC-------------------------------------e-eEEEEcCCCCEEEEEECC----------------CcEE
Q 005277 505 LSD-------------------------------------V-DCVRWHINCNYIATGSSD----------------KTVR 530 (704)
Q Consensus 505 ~~~-------------------------------------V-~~v~~~p~~~~l~tgs~d----------------g~I~ 530 (704)
... + ..+++.+....++.++.+ +.|.
T Consensus 202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~ 281 (599)
T 1w6s_A 202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF 281 (599)
T ss_dssp SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEE
Confidence 211 0 134566777888887765 3799
Q ss_pred EEeCCCCcEEEEeecCC----------CCEEEEEEe-cCC---CEEEEEeCCCeEEEEeCCCCeeeeeec
Q 005277 531 LWDVSSGECVRIFIGHR----------SMILSLAMS-PDG---RYMASGDEDGTIMMWDLASGRCVTPLM 586 (704)
Q Consensus 531 iwd~~~~~~~~~~~~h~----------~~i~~l~~s-pdg---~~l~sg~~dg~I~iwdl~~~~~~~~~~ 586 (704)
-+|..+|+.+..+.... .++. +... .+| ..++.++.+|.+.++|..+|+.+....
T Consensus 282 Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 282 GRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK 350 (599)
T ss_dssp EEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence 99999999988776422 1221 2222 567 567889999999999999999886653
No 281
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.10 E-value=0.005 Score=65.67 Aligned_cols=223 Identities=9% Similarity=0.026 Sum_probs=139.3
Q ss_pred eeCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEE
Q 005277 348 INTHNGLNCASISQDG-SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (704)
Q Consensus 348 ~~~~~~V~~~~fs~dg-~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 426 (704)
......+..++|++.+ .+..+-...+.|..+++...... ...............+
T Consensus 108 ~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~------------------------~~~~~~~~~~~~~p~g 163 (400)
T 3p5b_L 108 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV------------------------SSYDTVISRDIQAPDG 163 (400)
T ss_dssp ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------------------------------CCCEEEECSSCSCEEE
T ss_pred ccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCC------------------------CcceEEEeCCCCCccc
Confidence 4455678999999864 45555556788888887641100 0011111222345678
Q ss_pred EEEcCCCCEE-EEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEe-C-CCeEEEEECCCCceeEEecc
Q 005277 427 ASFSPLGDFI-LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-H-DRTARIWSMDRIQPLRIMAG 503 (704)
Q Consensus 427 l~~sp~~~~l-~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs-~-dg~i~lwd~~~~~~~~~~~~ 503 (704)
+++.+.+..| ++-...+.|.+.+++.......+.........|++.|.+.+++... . .+.|...+++..........
T Consensus 164 lavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~ 243 (400)
T 3p5b_L 164 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE 243 (400)
T ss_dssp EEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECS
T ss_pred EEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEEC
Confidence 8888755444 4556678999999986655444544445578999999655555444 2 37888888876554444444
Q ss_pred CCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCcEEEEeec--CCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCe
Q 005277 504 HLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIG--HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR 580 (704)
Q Consensus 504 ~~~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~--h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~ 580 (704)
.......|+++|++..|+.+. ..+.|..+|+........... .-.....+++. .+..+++-...+.|..+|..+|+
T Consensus 244 ~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 244 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS 322 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCC
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCC
Confidence 446778999998877776664 467899999865433333322 23455677773 44555666677889999988887
Q ss_pred eeeeecCCCceeeee
Q 005277 581 CVTPLMGHTSCVWTL 595 (704)
Q Consensus 581 ~~~~~~~h~~~V~sl 595 (704)
.+..+.........+
T Consensus 323 ~~~~i~~~~~~p~~i 337 (400)
T 3p5b_L 323 DVNLLAENLLSPEDM 337 (400)
T ss_dssp CCEEEECSCSCEEEE
T ss_pred ceEEEecCCCCCceE
Confidence 776665433333344
No 282
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.08 E-value=0.0062 Score=62.56 Aligned_cols=212 Identities=8% Similarity=0.033 Sum_probs=131.3
Q ss_pred eCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEE
Q 005277 349 NTHNGLNCASISQDG-SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA 427 (704)
Q Consensus 349 ~~~~~V~~~~fs~dg-~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 427 (704)
..-.....++|++++ .+.++-..++.|..+++...... ..........-....++
T Consensus 27 ~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~------------------------~~~~~~~~~~~~~p~gl 82 (316)
T 1ijq_A 27 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV------------------------SSYDTVISRDIQAPDGL 82 (316)
T ss_dssp CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------------------------------CEEEECSSCSCCCEE
T ss_pred cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCC------------------------cccEEEEeCCCCCcCEE
Confidence 345568899999865 45555566788988887641000 00001111112345788
Q ss_pred EEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeC-C-CeEEEEECCCCceeEEeccC
Q 005277 428 SFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-D-RTARIWSMDRIQPLRIMAGH 504 (704)
Q Consensus 428 ~~sp~~~~l~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~-d-g~i~lwd~~~~~~~~~~~~~ 504 (704)
++.+.+..|+ +-...+.|.+.++........+........++++.|.+..++.+.. . +.|...+++...........
T Consensus 83 avd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~ 162 (316)
T 1ijq_A 83 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN 162 (316)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSS
T ss_pred EEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECC
Confidence 8887555554 5567789999998854443334433456789999996555544443 3 68888888654333333334
Q ss_pred CCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCcEEEEe-ec--CCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCe
Q 005277 505 LSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIF-IG--HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR 580 (704)
Q Consensus 505 ~~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~~~-~~--h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~ 580 (704)
......++++|++..|+.+. ..+.|..+|+.... .+.+ .. .......+++. .+..+++-...+.|..+|..+++
T Consensus 163 ~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 163 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred CCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCc
Confidence 45678999998877776655 55789999986433 2333 21 23456788885 45666666678899999987887
Q ss_pred eeeeec
Q 005277 581 CVTPLM 586 (704)
Q Consensus 581 ~~~~~~ 586 (704)
.+..+.
T Consensus 241 ~~~~i~ 246 (316)
T 1ijq_A 241 DVNLLA 246 (316)
T ss_dssp CCEEEE
T ss_pred ceEEEe
Confidence 666554
No 283
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.08 E-value=0.0022 Score=66.03 Aligned_cols=158 Identities=7% Similarity=-0.033 Sum_probs=105.1
Q ss_pred cCeEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCce-eEEeecCCcCeeEEEEcC-CCCEEEEEeCCCeEEEEECCCCcee
Q 005277 422 GPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNAN-LVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPL 498 (704)
Q Consensus 422 ~~V~~l~~sp~~~~l~-s~s~Dg~I~lwd~~~~~~-~~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~lwd~~~~~~~ 498 (704)
..+.+++|.+.+..|+ +-...+.|..+++..... ...+...-.....+++.+ .+..+++-...+.|.+++++.....
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~ 114 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 114 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE
Confidence 3567899998655554 556678899999886532 122222223466889987 4555566667789999999865444
Q ss_pred EEeccCCCCeeEEEEcCCCCEEEEEEC--CCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEE-eCCCeEEEEe
Q 005277 499 RIMAGHLSDVDCVRWHINCNYIATGSS--DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG-DEDGTIMMWD 575 (704)
Q Consensus 499 ~~~~~~~~~V~~v~~~p~~~~l~tgs~--dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg-~~dg~I~iwd 575 (704)
............++++|.+..|+.+.. .+.|...++............-.....++++|++..|+.+ +..+.|..+|
T Consensus 115 ~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d 194 (318)
T 3sov_A 115 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSN 194 (318)
T ss_dssp EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEc
Confidence 444445566789999997666666653 5788888875433222222333467899999976666655 4567899999
Q ss_pred CCCC
Q 005277 576 LASG 579 (704)
Q Consensus 576 l~~~ 579 (704)
+...
T Consensus 195 ~dG~ 198 (318)
T 3sov_A 195 LDGT 198 (318)
T ss_dssp TTSC
T ss_pred CCCC
Confidence 8643
No 284
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.04 E-value=0.0022 Score=66.05 Aligned_cols=206 Identities=8% Similarity=0.031 Sum_probs=130.3
Q ss_pred CEEEEEEcCC-CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcC
Q 005277 353 GLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (704)
Q Consensus 353 ~V~~~~fs~d-g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 431 (704)
....++|++. +.+..+-...+.|..+++..... .. ......-....++++.+
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~--------------------------~~-~~~~~~l~~p~glavd~ 88 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES--------------------------VQ-NVVVSGLLSPDGLACDW 88 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSC--------------------------CC-EEEEECCSCCCEEEEET
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCc--------------------------eE-EEEcCCCCCccEEEEEc
Confidence 4678899885 55666666678888888764210 00 01111113456788887
Q ss_pred CCCEE-EEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEe--CCCeEEEEECCCCceeEEeccCCCCe
Q 005277 432 LGDFI-LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS--HDRTARIWSMDRIQPLRIMAGHLSDV 508 (704)
Q Consensus 432 ~~~~l-~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs--~dg~i~lwd~~~~~~~~~~~~~~~~V 508 (704)
.+..| ++-...+.|.+++++.................+++.|.+..++.+. ..+.|...+++...............
T Consensus 89 ~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~P 168 (318)
T 3sov_A 89 LGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWP 168 (318)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCE
T ss_pred CCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCc
Confidence 55544 4556678999999885443333334445678999998655555544 35788888887544333333334556
Q ss_pred eEEEEcCCCCEEEEEE-CCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeeec
Q 005277 509 DCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM 586 (704)
Q Consensus 509 ~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~~ 586 (704)
..++++|++..|+.+. ..+.|..+|+..........+.......+++. .+..+++-...+.|..+|..+|+....+.
T Consensus 169 nglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 169 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred cEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 8999999766666554 56789999986433332333344567788886 34555566677899999988887665554
No 285
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.01 E-value=0.00081 Score=72.58 Aligned_cols=153 Identities=12% Similarity=0.091 Sum_probs=99.8
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeC-CC----eEEEEECCCCc
Q 005277 423 PVYSASFSP-LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DR----TARIWSMDRIQ 496 (704)
Q Consensus 423 ~V~~l~~sp-~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~-dg----~i~lwd~~~~~ 496 (704)
....++|+| ++..|+.+...+.|+.+|+..+.... +.........|+|+++|++++++.. ++ .+..++.+...
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~ 216 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF 216 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence 457889998 45667666655889999998655433 3334456789999999996666654 22 23334432211
Q ss_pred -eeEEeccCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCCcEEEEee-cCCCCEEEEEEecCCCEEEE-EeCCCeEE
Q 005277 497 -PLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSPDGRYMAS-GDEDGTIM 572 (704)
Q Consensus 497 -~~~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~i~~l~~spdg~~l~s-g~~dg~I~ 572 (704)
....+. .......++++| ++.++++-..++.|+.++..++....... +.......++|+|+|++|+. -...+.|.
T Consensus 217 ~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~ 295 (430)
T 3tc9_A 217 KVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYIL 295 (430)
T ss_dssp CSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred eeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEE
Confidence 112222 234467888999 67766666678899999998766533322 22245789999999995554 45678899
Q ss_pred EEeCC
Q 005277 573 MWDLA 577 (704)
Q Consensus 573 iwdl~ 577 (704)
.++..
T Consensus 296 ~~~~d 300 (430)
T 3tc9_A 296 RSDYD 300 (430)
T ss_dssp EEEEE
T ss_pred EEeCC
Confidence 98765
No 286
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.94 E-value=0.00011 Score=84.21 Aligned_cols=115 Identities=10% Similarity=0.111 Sum_probs=75.8
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------eEEEEeCCCCce--eEEeec-CCcCeeEEEEcCCCCEEEEEe-CCCeEEE
Q 005277 426 SASFSP-LGDFILSSSADT-----------TIRLWSTKLNAN--LVCYKG-HNYPVWDVQFNPQGHYFASSS-HDRTARI 489 (704)
Q Consensus 426 ~l~~sp-~~~~l~s~s~Dg-----------~I~lwd~~~~~~--~~~~~~-h~~~V~~v~~sp~~~~l~sgs-~dg~i~l 489 (704)
++++.+ +++.++.|+.+. .+.+||..+++- +..+.. +.....++++..+++.+++|+ .++.+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 556667 788888876543 588999887653 233322 333344578888999999998 4568999
Q ss_pred EECCCCceeEEeccCCC-CeeEEEEcCCCCEEEEEE-CC-----CcEEEEeCCCCcEE
Q 005277 490 WSMDRIQPLRIMAGHLS-DVDCVRWHINCNYIATGS-SD-----KTVRLWDVSSGECV 540 (704)
Q Consensus 490 wd~~~~~~~~~~~~~~~-~V~~v~~~p~~~~l~tgs-~d-----g~I~iwd~~~~~~~ 540 (704)
||..+.+-...-..+.. .-.+++..+++++++.|+ .+ ..+.+||..++.-.
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~ 327 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT 327 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcce
Confidence 99877543332111211 123455667999999988 34 56999999887643
No 287
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.92 E-value=0.0038 Score=70.02 Aligned_cols=154 Identities=16% Similarity=0.137 Sum_probs=103.3
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEeecCCc----CeeE--EEEcC--CCC-EEEEEe------CCCeEEEEECCCCce
Q 005277 433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNY----PVWD--VQFNP--QGH-YFASSS------HDRTARIWSMDRIQP 497 (704)
Q Consensus 433 ~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~----~V~~--v~~sp--~~~-~l~sgs------~dg~i~lwd~~~~~~ 497 (704)
+..++.++.|+.|..+|..+++.+..+..... .+.+ +.... +|+ .+++++ .++.|..+|..+++.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 56688888999999999999999877654321 1111 11111 233 566654 378999999999988
Q ss_pred eEEeccCCCC-----------------------------------------eeEEEEcCCCCEEEEEEC-----------
Q 005277 498 LRIMAGHLSD-----------------------------------------VDCVRWHINCNYIATGSS----------- 525 (704)
Q Consensus 498 ~~~~~~~~~~-----------------------------------------V~~v~~~p~~~~l~tgs~----------- 525 (704)
+......... -..+++.|....+++++.
T Consensus 197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~ 276 (582)
T 1flg_A 197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART 276 (582)
T ss_dssp EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence 7655321100 023566677778887763
Q ss_pred ---------C----CcEEEEeCCCCcEEEEeec--CC--------CCEEEEEEe-cCCC---EEEEEeCCCeEEEEeCCC
Q 005277 526 ---------D----KTVRLWDVSSGECVRIFIG--HR--------SMILSLAMS-PDGR---YMASGDEDGTIMMWDLAS 578 (704)
Q Consensus 526 ---------d----g~I~iwd~~~~~~~~~~~~--h~--------~~i~~l~~s-pdg~---~l~sg~~dg~I~iwdl~~ 578 (704)
| +.|.-+|..+|+.+..+.. |. .++. +... .+|+ .++.++.+|.++++|..+
T Consensus 277 ~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~t 355 (582)
T 1flg_A 277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSN 355 (582)
T ss_dssp CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTT
T ss_pred cCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCC
Confidence 2 5899999999999988753 32 1221 2222 4674 788899999999999999
Q ss_pred CeeeeeecC
Q 005277 579 GRCVTPLMG 587 (704)
Q Consensus 579 ~~~~~~~~~ 587 (704)
|+.+.....
T Consensus 356 G~~lw~~~~ 364 (582)
T 1flg_A 356 GKLQNAFPF 364 (582)
T ss_dssp CCEEEEEES
T ss_pred CCEeccccc
Confidence 998876653
No 288
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.82 E-value=0.0091 Score=61.65 Aligned_cols=169 Identities=12% Similarity=0.109 Sum_probs=95.6
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE-eecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEEC--CCCcee
Q 005277 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVC-YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM--DRIQPL 498 (704)
Q Consensus 422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~-~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~--~~~~~~ 498 (704)
+.++.+.+.+++..++.+ .+|.|.. ..+.++.-.. ..++...+..+.+.+++.+++++...+..+-+|- .+.+.+
T Consensus 122 ~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~ 199 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPH 199 (327)
T ss_dssp SCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEE
T ss_pred CCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeEC
Confidence 456778877767655554 4554422 2232332222 2345567899999999988877655444444443 222232
Q ss_pred EEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEee-c---CCCCEEEEEEecCCCEEEEEeCCCeEEEE
Q 005277 499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-G---HRSMILSLAMSPDGRYMASGDEDGTIMMW 574 (704)
Q Consensus 499 ~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~---h~~~i~~l~~spdg~~l~sg~~dg~I~iw 574 (704)
-......+..+.+.+++..++ ++.+|.+++.+...|+.-..+. + +...+.++++.+++..++++. +|.| ++
T Consensus 200 --~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~ 274 (327)
T 2xbg_A 200 --NRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LC 274 (327)
T ss_dssp --ECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EE
T ss_pred --CCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EE
Confidence 234456788899999887654 4567888776433343322222 1 223588999998887766654 6666 34
Q ss_pred eCCCCeeeeeec---CCCceeeeeee
Q 005277 575 DLASGRCVTPLM---GHTSCVWTLAY 597 (704)
Q Consensus 575 dl~~~~~~~~~~---~h~~~V~sl~~ 597 (704)
....|+.-..+. .+...+.++.|
T Consensus 275 S~DgG~tW~~~~~~~~~~~~~~~v~~ 300 (327)
T 2xbg_A 275 SQDGGQTWQQDVDVKKVPSNFYKILF 300 (327)
T ss_dssp ESSTTSSCEECGGGTTSSSCCCEEEE
T ss_pred eCCCCcccEEcCccCCCCCCeEEEEE
Confidence 444443322222 22345566655
No 289
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.81 E-value=0.0044 Score=63.26 Aligned_cols=154 Identities=8% Similarity=0.088 Sum_probs=108.6
Q ss_pred eEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeEEeecC-------CcCeeEEEE---cCCCCEEEEEe----------
Q 005277 424 VYSASFSPLGDFILSSS-ADTTIRLWSTKLNANLVCYKGH-------NYPVWDVQF---NPQGHYFASSS---------- 482 (704)
Q Consensus 424 V~~l~~sp~~~~l~s~s-~Dg~I~lwd~~~~~~~~~~~~h-------~~~V~~v~~---sp~~~~l~sgs---------- 482 (704)
-.++.|.+....++.++ ..++|..|+...+......... ...+..|.| .|+++++++..
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence 34688987655555555 7899999999855443332221 113679999 68888877644
Q ss_pred ---CCCeEEEEECC---CCceeEEec--c-----------CCCCeeEEEEcCCCCEEEEEECC-CcEEEEeCCCCcEEEE
Q 005277 483 ---HDRTARIWSMD---RIQPLRIMA--G-----------HLSDVDCVRWHINCNYIATGSSD-KTVRLWDVSSGECVRI 542 (704)
Q Consensus 483 ---~dg~i~lwd~~---~~~~~~~~~--~-----------~~~~V~~v~~~p~~~~l~tgs~d-g~I~iwd~~~~~~~~~ 542 (704)
.++.+..+|+. +++.+.... . -......++..++|+..++++.. +.|..++.... .+..
T Consensus 95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~~ 173 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVST 173 (334)
T ss_dssp CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEEE
T ss_pred ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEee
Confidence 26789999999 777765543 1 11247789999999999999888 88888886533 3332
Q ss_pred ee-c-----CCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 005277 543 FI-G-----HRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578 (704)
Q Consensus 543 ~~-~-----h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~ 578 (704)
+. . .....+.|+++|+|+.|++....|.|..+|+.+
T Consensus 174 ~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 174 FAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred eeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 21 1 122467999999999999887799999999874
No 290
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.78 E-value=0.0064 Score=66.06 Aligned_cols=200 Identities=8% Similarity=0.013 Sum_probs=112.3
Q ss_pred CEEEEEEcCC--CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEE-
Q 005277 353 GLNCASISQD--GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF- 429 (704)
Q Consensus 353 ~V~~~~fs~d--g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~- 429 (704)
....++|+|. ++++++-...+.|++.|+......... ..-.........++|
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~-------------------------~~~~~~~~~p~~ia~~ 194 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPL-------------------------NINTIPTNRIRSIAFN 194 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEE-------------------------CCTTSSCSBEEEEEEC
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEE-------------------------ccCccccCCCcEEEEe
Confidence 3578899983 555555544566888887642111000 000011235789999
Q ss_pred ------cCCCCEEEEEeCCC-------eEEEEeCCC-Ccee-----EEeecCCcCeeEEEEcC-CCCEEEEEeCCCeEEE
Q 005277 430 ------SPLGDFILSSSADT-------TIRLWSTKL-NANL-----VCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARI 489 (704)
Q Consensus 430 ------sp~~~~l~s~s~Dg-------~I~lwd~~~-~~~~-----~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~l 489 (704)
++++++|+.+...+ .|.+.+... +... ..+.... ....++++| ++.++++-..++.|..
T Consensus 195 ~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~~g~LYvtd~~~g~V~r 273 (496)
T 3kya_A 195 KKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPINGELYFNSYEKGQVFR 273 (496)
T ss_dssp CCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTTTCCEEEEETTTTEEEE
T ss_pred ecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCC-CceEEEEcCCCCeEEEEECCCCEEEE
Confidence 99999777665543 266665443 1211 1222222 345788999 5565666668888999
Q ss_pred EECC-------CCce-----------e-EEec-cCCCCeeEEEEcCCCCEEEEE-ECCCcEEEEeC--CCCcE--EEEee
Q 005277 490 WSMD-------RIQP-----------L-RIMA-GHLSDVDCVRWHINCNYIATG-SSDKTVRLWDV--SSGEC--VRIFI 544 (704)
Q Consensus 490 wd~~-------~~~~-----------~-~~~~-~~~~~V~~v~~~p~~~~l~tg-s~dg~I~iwd~--~~~~~--~~~~~ 544 (704)
+|++ ++.. . ..+. +.......++|+|++++|+.+ +..+.|+.+|. .++.. ...+.
T Consensus 274 ~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~a 353 (496)
T 3kya_A 274 LDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFV 353 (496)
T ss_dssp ECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEE
T ss_pred EecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEec
Confidence 9987 4432 1 1122 223445789999999965555 45678888665 33322 12332
Q ss_pred cC---C------------CCEE-EEEEe-------cCCCEEEEEeCCCeEEEEeCCCC
Q 005277 545 GH---R------------SMIL-SLAMS-------PDGRYMASGDEDGTIMMWDLASG 579 (704)
Q Consensus 545 ~h---~------------~~i~-~l~~s-------pdg~~l~sg~~dg~I~iwdl~~~ 579 (704)
+. . .... .++.. ++|.++++=...+.|+.++ .+|
T Consensus 354 G~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G 410 (496)
T 3kya_A 354 GGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEG 410 (496)
T ss_dssp EBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTC
T ss_pred CCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCC
Confidence 21 1 1233 34444 4555555555667777777 344
No 291
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.76 E-value=0.018 Score=66.73 Aligned_cols=162 Identities=7% Similarity=-0.071 Sum_probs=108.1
Q ss_pred CccCeEEEEEcCCCCEEE-EEeCCCeEEEEeCCCC----ceeEEeecCCcCeeEEEEcCCC-CEEEEEeCCCeEEEEECC
Q 005277 420 HSGPVYSASFSPLGDFIL-SSSADTTIRLWSTKLN----ANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMD 493 (704)
Q Consensus 420 h~~~V~~l~~sp~~~~l~-s~s~Dg~I~lwd~~~~----~~~~~~~~h~~~V~~v~~sp~~-~~l~sgs~dg~i~lwd~~ 493 (704)
....+.+|+|.+....|+ +-...+.|+.+++... .....+.........|++.+.+ +++++-...+.|.+.+++
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 501 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence 345678999998655555 5556688999998753 2233333334456789998866 555566678899999998
Q ss_pred CCceeEEeccCCCCeeEEEEcCCCCEEEEEEC--CCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEe-CCCe
Q 005277 494 RIQPLRIMAGHLSDVDCVRWHINCNYIATGSS--DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGT 570 (704)
Q Consensus 494 ~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~--dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~-~dg~ 570 (704)
.......+.........|+++|...+|+.... .+.|...++........+...-.....|++++.+..|+.+. ..+.
T Consensus 502 G~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~ 581 (791)
T 3m0c_C 502 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS 581 (791)
T ss_dssp SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred CCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCc
Confidence 76554444445567889999998666666543 26798888865444333433445789999998766666654 4568
Q ss_pred EEEEeCCCCee
Q 005277 571 IMMWDLASGRC 581 (704)
Q Consensus 571 I~iwdl~~~~~ 581 (704)
|...++.....
T Consensus 582 I~~~d~dG~~~ 592 (791)
T 3m0c_C 582 ISSIDVNGGNR 592 (791)
T ss_dssp EEEEETTSCSC
T ss_pred EEEEecCCCce
Confidence 99999865433
No 292
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.75 E-value=0.0047 Score=63.60 Aligned_cols=142 Identities=17% Similarity=0.222 Sum_probs=98.7
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCC----CC---E-EEEEeC--CCeEEEEECC-CCceeEE
Q 005277 432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ----GH---Y-FASSSH--DRTARIWSMD-RIQPLRI 500 (704)
Q Consensus 432 ~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~----~~---~-l~sgs~--dg~i~lwd~~-~~~~~~~ 500 (704)
...+++.....+-+.+||+ .++.+..+.. +.+..+..-|. |. + +++.-. +++|++|+++ ....+..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~ 115 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence 3456777777889999999 6888888764 45677766652 22 2 233334 6899999774 2224554
Q ss_pred ecc------CC-CCeeEEEE--cCC-CC-EEEEEECCCcEEEEeCC-------CCcEEEEeecCCCCEEEEEEecCCCEE
Q 005277 501 MAG------HL-SDVDCVRW--HIN-CN-YIATGSSDKTVRLWDVS-------SGECVRIFIGHRSMILSLAMSPDGRYM 562 (704)
Q Consensus 501 ~~~------~~-~~V~~v~~--~p~-~~-~l~tgs~dg~I~iwd~~-------~~~~~~~~~~h~~~i~~l~~spdg~~l 562 (704)
+.. .. ..+..+|+ +|. +. ++++...+|.+..|++. +++.++.|.. .+.+..+...+....|
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~L 194 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRL 194 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEE
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeE
Confidence 421 11 45667777 664 43 68888889999999983 3466777764 4578899999988899
Q ss_pred EEEeCCCeEEEEeCC
Q 005277 563 ASGDEDGTIMMWDLA 577 (704)
Q Consensus 563 ~sg~~dg~I~iwdl~ 577 (704)
+.+-++.-|..+|..
T Consensus 195 yv~eEd~GIw~~da~ 209 (355)
T 3amr_A 195 YIAEEDEAIWKFSAE 209 (355)
T ss_dssp EEEETTTEEEEEECS
T ss_pred EEecccceEEEEeCC
Confidence 999999777777755
No 293
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.75 E-value=0.017 Score=66.91 Aligned_cols=214 Identities=9% Similarity=0.038 Sum_probs=132.9
Q ss_pred eeCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEE
Q 005277 348 INTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (704)
Q Consensus 348 ~~~~~~V~~~~fs~d-g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 426 (704)
......+..++|++. +.++++-...+.|+.+++...... ......+........+
T Consensus 420 ~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~------------------------~~~~~vi~~~l~~P~G 475 (791)
T 3m0c_C 420 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV------------------------SSYDTVISRDIQAPDG 475 (791)
T ss_dssp ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------------------------------CEEEECSSCSCCCE
T ss_pred ecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCC------------------------cceeEEEecCCCCcce
Confidence 344556788999885 555555556778888887641100 0011112222345667
Q ss_pred EEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEe-CC-CeEEEEECCCCceeEEecc
Q 005277 427 ASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-HD-RTARIWSMDRIQPLRIMAG 503 (704)
Q Consensus 427 l~~sp~~~~l~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs-~d-g~i~lwd~~~~~~~~~~~~ 503 (704)
|++.+.+..|+ +-...+.|.+.+++.......+.........|++.|.+.+|+... .. +.|...+++.......+..
T Consensus 476 LAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~ 555 (791)
T 3m0c_C 476 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE 555 (791)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS
T ss_pred eeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeC
Confidence 88887776555 556778999999985554444444445678999999755555444 33 6888889876655555554
Q ss_pred CCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCcEEEEeecC--CCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCe
Q 005277 504 HLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIGH--RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR 580 (704)
Q Consensus 504 ~~~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~h--~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~ 580 (704)
.......|++.+.+..|+.+. ..+.|..+++............ -....+|++. .++++++-...+.|...|..+|+
T Consensus 556 ~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~-~~~lYwtD~~~~~I~~~dk~tG~ 634 (791)
T 3m0c_C 556 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS 634 (791)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred CCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe-CCEEEEEECCCCEEEEEeCCCCc
Confidence 556788999998777666664 4567999998654443333322 2345567764 23444455566888888888887
Q ss_pred eeeeec
Q 005277 581 CVTPLM 586 (704)
Q Consensus 581 ~~~~~~ 586 (704)
.+..+.
T Consensus 635 ~~~~l~ 640 (791)
T 3m0c_C 635 DVNLLA 640 (791)
T ss_dssp CCEEEE
T ss_pred ceEEee
Confidence 666554
No 294
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.72 E-value=0.087 Score=59.35 Aligned_cols=209 Identities=9% Similarity=0.030 Sum_probs=124.8
Q ss_pred CCCCEEEEEEcCCCCEEE-EEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEE
Q 005277 350 THNGLNCASISQDGSLVA-GGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS 428 (704)
Q Consensus 350 ~~~~V~~~~fs~dg~~la-sg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 428 (704)
.-.....++|++.+..|. +=...+.|..++++.... .......--....+++
T Consensus 38 ~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~---------------------------~~~v~~~~~~~P~GlA 90 (619)
T 3s94_A 38 GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES---------------------------VQNVVVSGLLSPDGLA 90 (619)
T ss_dssp CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC--------------------------------CEEEECSSCSCEEEEE
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCc---------------------------eEEEEeCCCCCcCeEE
Confidence 344578899998655554 444567788888764100 0111111224578899
Q ss_pred EcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeC--CCeEEEEECCCCceeEEeccCC
Q 005277 429 FSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH--DRTARIWSMDRIQPLRIMAGHL 505 (704)
Q Consensus 429 ~sp~~~~l~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~--dg~i~lwd~~~~~~~~~~~~~~ 505 (704)
+.+.+..|+ +-...+.|.+.+++...........-....+|++.|.+.+++.... .+.|...+++............
T Consensus 91 vD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~ 170 (619)
T 3s94_A 91 CDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEI 170 (619)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSC
T ss_pred EEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCC
Confidence 998666555 5566789999999855443333344455779999996555544443 4577777777554444444445
Q ss_pred CCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeee
Q 005277 506 SDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP 584 (704)
Q Consensus 506 ~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~ 584 (704)
.....+++++++..|+.+. ..+.|..+|+..........+.......|++..+ ...++-...+.|...|..+++....
T Consensus 171 ~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~ 249 (619)
T 3s94_A 171 YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLRE 249 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEE
T ss_pred CCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEE
Confidence 5678999998766666554 5678999998654333222212223346677544 4444444677899999888876555
Q ss_pred ec
Q 005277 585 LM 586 (704)
Q Consensus 585 ~~ 586 (704)
+.
T Consensus 250 i~ 251 (619)
T 3s94_A 250 IH 251 (619)
T ss_dssp CC
T ss_pred Ee
Confidence 54
No 295
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.72 E-value=0.0079 Score=61.91 Aligned_cols=193 Identities=14% Similarity=0.235 Sum_probs=122.0
Q ss_pred CCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCC----CC---
Q 005277 362 DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL----GD--- 434 (704)
Q Consensus 362 dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~----~~--- 434 (704)
...++++....+-+.+||+.. +....+.. +.++.+..-|+ ++
T Consensus 39 ~~s~ii~t~k~~gL~Vydl~G-----------------------------~~l~~~~~--g~~nnVD~r~~~~l~g~~~d 87 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSLDG-----------------------------KMLHSYNT--GKLNNVDIRYDFPLNGKKVD 87 (355)
T ss_dssp GGCEEEEEETTTEEEEEETTS-----------------------------CEEEEECC--SCEEEEEEEEEEEETTEEEE
T ss_pred CccEEEEEcCCCCEEEEcCCC-----------------------------cEEEEccC--CCcccEEEecccccCCceEe
Confidence 445555555677899999954 22222221 44555555442 22
Q ss_pred EEE-EEeC--CCeEEEEeCCC-CceeEEeec------CC-cCeeEEEE--cCC-CC-EEEEEeCCCeEEEEECC------
Q 005277 435 FIL-SSSA--DTTIRLWSTKL-NANLVCYKG------HN-YPVWDVQF--NPQ-GH-YFASSSHDRTARIWSMD------ 493 (704)
Q Consensus 435 ~l~-s~s~--Dg~I~lwd~~~-~~~~~~~~~------h~-~~V~~v~~--sp~-~~-~l~sgs~dg~i~lwd~~------ 493 (704)
+++ +.-. +++|.+|+++. ...+..+.. .. ..+..+++ +|. +. ++++...+|.+..|++.
T Consensus 88 la~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~ 167 (355)
T 3amr_A 88 IAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGY 167 (355)
T ss_dssp EEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSC
T ss_pred EEEEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCc
Confidence 223 3333 57999997742 223444421 11 45667888 774 43 67788888999999883
Q ss_pred -CCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC-----CCcEEEEee-cC-CCCEEEEEEe--cCCC-EE
Q 005277 494 -RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS-----SGECVRIFI-GH-RSMILSLAMS--PDGR-YM 562 (704)
Q Consensus 494 -~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~-----~~~~~~~~~-~h-~~~i~~l~~s--pdg~-~l 562 (704)
+.+.++.+.. .+.+..+...+....|+++-.+..|..+|.. +++.+..+. ++ ...+..|++- ++|+ +|
T Consensus 168 ~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyL 246 (355)
T 3amr_A 168 ISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYL 246 (355)
T ss_dssp EEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEE
T ss_pred ccceEEEEecC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEE
Confidence 2345677664 4578888889989999999999777777755 345565542 22 2368888884 4555 55
Q ss_pred EEEe-CCCeEEEEeCC-CCeeeeeec
Q 005277 563 ASGD-EDGTIMMWDLA-SGRCVTPLM 586 (704)
Q Consensus 563 ~sg~-~dg~I~iwdl~-~~~~~~~~~ 586 (704)
++++ .++...+||.. +.+.+..+.
T Consensus 247 ivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 247 MASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred EEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 5555 67899999996 566666653
No 296
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.70 E-value=0.011 Score=60.39 Aligned_cols=197 Identities=9% Similarity=0.079 Sum_probs=123.3
Q ss_pred EEEEEEcCC-CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccC------CccCeEE
Q 005277 354 LNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG------HSGPVYS 426 (704)
Q Consensus 354 V~~~~fs~d-g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------h~~~V~~ 426 (704)
--|++|.+. +.++++....|.|..|+........ . .+.+ ....+.+
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~--------------------------~-~~~~~s~~g~~~~~~sG 67 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFN--------------------------V-VIDGASSNGDGEQQMSG 67 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEE--------------------------E-CCTTTCCSSCCSEEEEE
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEE--------------------------E-ecCCccccCCCcceeeE
Confidence 457889875 4444444479999999976321110 0 1111 0113579
Q ss_pred EEE---cCCCCEEEEEe-------------CCCeEEEEeCC---CCceeEEeec-------------CCcCeeEEEEcCC
Q 005277 427 ASF---SPLGDFILSSS-------------ADTTIRLWSTK---LNANLVCYKG-------------HNYPVWDVQFNPQ 474 (704)
Q Consensus 427 l~~---sp~~~~l~s~s-------------~Dg~I~lwd~~---~~~~~~~~~~-------------h~~~V~~v~~sp~ 474 (704)
|.| .|+++++++.. .+..|..+|+. +++.+....- -.....+++..++
T Consensus 68 l~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~ 147 (334)
T 2p9w_A 68 LSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRD 147 (334)
T ss_dssp EEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTT
T ss_pred EEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCC
Confidence 999 58877766543 26779999999 7777655441 1124789999999
Q ss_pred CCEEEEEeCC-CeEEEEECCCCceeEEec------cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcE--EEEee-
Q 005277 475 GHYFASSSHD-RTARIWSMDRIQPLRIMA------GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC--VRIFI- 544 (704)
Q Consensus 475 ~~~l~sgs~d-g~i~lwd~~~~~~~~~~~------~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~--~~~~~- 544 (704)
|+..++++.. +.|...+.+.. .+..+. ......+.|+++|+++.|++....|.+..+|+.+... +..-.
T Consensus 148 GnaYVt~s~~~~~I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~ 226 (334)
T 2p9w_A 148 GNSYVAFALGMPAIARVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKIN 226 (334)
T ss_dssp SCEEEEEEESSCEEEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEES
T ss_pred CCEEEeCCCCCCeEEEEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeeccccc
Confidence 9999999988 88777777654 222221 1122367999999999998887799999999884332 22110
Q ss_pred cC---CCCEEEE-EEecCCCE-EEEEeCCCeEEEEeCCC
Q 005277 545 GH---RSMILSL-AMSPDGRY-MASGDEDGTIMMWDLAS 578 (704)
Q Consensus 545 ~h---~~~i~~l-~~spdg~~-l~sg~~dg~I~iwdl~~ 578 (704)
+. -.....| ..-.+|+. |++....+.+.+.+...
T Consensus 227 G~~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 227 GDFGTLSGTEKIVTVPVGNESVLVGARAPYAISFRSWDN 265 (334)
T ss_dssp SCCCCCTTEEEEEEEEETTEEEEEEEETTEEEEEECSST
T ss_pred CCcccccCcccccccccCCEEEEEEcCCCCEEEEECCCC
Confidence 21 1223443 33347777 44555566666665444
No 297
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.58 E-value=0.00082 Score=77.27 Aligned_cols=158 Identities=6% Similarity=-0.059 Sum_probs=98.0
Q ss_pred cCeEEEEEcCCCCEEEEE-eCCCeEEEEeCCC----CceeEEeecCCcCeeEEEEcC-CCCEEEEEeCCCeEEEEECCCC
Q 005277 422 GPVYSASFSPLGDFILSS-SADTTIRLWSTKL----NANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRI 495 (704)
Q Consensus 422 ~~V~~l~~sp~~~~l~s~-s~Dg~I~lwd~~~----~~~~~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~lwd~~~~ 495 (704)
..+.+++|.+.+..|+.+ ...+.|+.+++.. ......+.........|++.+ .++++++-...+.|.+++++..
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 346688999877766654 4567899999875 222222221222345788875 4555555566789999998865
Q ss_pred ceeEEeccCCCCeeEEEEcCCCCEEEEEEC--CCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEE-EEeCCCeEE
Q 005277 496 QPLRIMAGHLSDVDCVRWHINCNYIATGSS--DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMA-SGDEDGTIM 572 (704)
Q Consensus 496 ~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~--dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~-sg~~dg~I~ 572 (704)
.....+.........++++|.+.+|+.+.. .+.|..+++............-.....|+|+|++..|+ +-...+.|.
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~ 565 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS 565 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEE
Confidence 544444434456688999997665555442 26788887753322222222234567899999765554 445667899
Q ss_pred EEeCCCC
Q 005277 573 MWDLASG 579 (704)
Q Consensus 573 iwdl~~~ 579 (704)
.+|+...
T Consensus 566 ~~d~dG~ 572 (699)
T 1n7d_A 566 SIDVNGG 572 (699)
T ss_dssp EECSSSS
T ss_pred EEccCCC
Confidence 9998643
No 298
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.56 E-value=0.044 Score=61.79 Aligned_cols=159 Identities=7% Similarity=-0.042 Sum_probs=103.6
Q ss_pred cCeEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCce-eEEeecCCcCeeEEEEcCC-CCEEEEEeCCCeEEEEECCCCcee
Q 005277 422 GPVYSASFSPLGDFILSS-SADTTIRLWSTKLNAN-LVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRIQPL 498 (704)
Q Consensus 422 ~~V~~l~~sp~~~~l~s~-s~Dg~I~lwd~~~~~~-~~~~~~h~~~V~~v~~sp~-~~~l~sgs~dg~i~lwd~~~~~~~ 498 (704)
..+.+++|++.+..|+.+ ...+.|..++++.... ...+...-.....+++.+. ++++++-...+.|.+.+++.....
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~ 119 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 119 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEE
Confidence 457899999977766644 4567899999875532 2233333356789999985 455556567789999999875544
Q ss_pred EEeccCCCCeeEEEEcCCCCEEEEEEC--CCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEE-eCCCeEEEEe
Q 005277 499 RIMAGHLSDVDCVRWHINCNYIATGSS--DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG-DEDGTIMMWD 575 (704)
Q Consensus 499 ~~~~~~~~~V~~v~~~p~~~~l~tgs~--dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg-~~dg~I~iwd 575 (704)
............|+++|.+.+|+.... .+.|...++............-.....|++++++..|+.+ ...+.|...|
T Consensus 120 ~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~ 199 (619)
T 3s94_A 120 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSN 199 (619)
T ss_dssp EEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEES
T ss_pred EEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEec
Confidence 444345566789999997666666553 4567777765433333333344568999999976666555 4567888888
Q ss_pred CCCCe
Q 005277 576 LASGR 580 (704)
Q Consensus 576 l~~~~ 580 (704)
+....
T Consensus 200 ~dG~~ 204 (619)
T 3s94_A 200 LDGTN 204 (619)
T ss_dssp SSCCE
T ss_pred CCCCc
Confidence 86543
No 299
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.56 E-value=0.026 Score=58.82 Aligned_cols=199 Identities=9% Similarity=0.117 Sum_probs=103.4
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEE
Q 005277 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (704)
Q Consensus 350 ~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 429 (704)
.-..-..++|.|||+++++ ..+|.|.+++ .. ....... .............|+|
T Consensus 29 ~l~~P~~ia~~pdG~l~V~-e~~g~I~~i~-~g-~~~~~~~-----------------------~~v~~~g~~~p~gia~ 82 (352)
T 2ism_A 29 GLEVPWALAFLPDGGMLIA-ERPGRIRLFR-EG-RLSTYAE-----------------------LSVYHRGESGLLGLAL 82 (352)
T ss_dssp CCSCEEEEEECTTSCEEEE-ETTTEEEEEE-TT-EEEEEEE-----------------------CCCCCSTTCSEEEEEE
T ss_pred CCCCceEEEEcCCCeEEEE-eCCCeEEEEE-CC-CccEeec-----------------------ceEeecCCCCceeEEE
Confidence 3445789999999996555 5679999988 32 1100000 0011112345789999
Q ss_pred cCC---CCEEEEEeC-C-----CeEEEEeCCCCc-----eeE-Eee---cCCcCeeEEEEcCCCCEEEEEeC--------
Q 005277 430 SPL---GDFILSSSA-D-----TTIRLWSTKLNA-----NLV-CYK---GHNYPVWDVQFNPQGHYFASSSH-------- 483 (704)
Q Consensus 430 sp~---~~~l~s~s~-D-----g~I~lwd~~~~~-----~~~-~~~---~h~~~V~~v~~sp~~~~l~sgs~-------- 483 (704)
+|+ +..|+.+.. . +.|..|+...+. .+. .+. +.......++|.|+|.++++.+.
T Consensus 83 ~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~ 162 (352)
T 2ism_A 83 HPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQ 162 (352)
T ss_dssp CTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGG
T ss_pred CCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCcccc
Confidence 998 555554433 2 568788876431 111 122 11123468999999976666432
Q ss_pred -----CCeEEEEECCCC------------ceeEEe-ccCCCCeeEEEEcC-CCCEEEEEECCCcE------EEEeCCCCc
Q 005277 484 -----DRTARIWSMDRI------------QPLRIM-AGHLSDVDCVRWHI-NCNYIATGSSDKTV------RLWDVSSGE 538 (704)
Q Consensus 484 -----dg~i~lwd~~~~------------~~~~~~-~~~~~~V~~v~~~p-~~~~l~tgs~dg~I------~iwd~~~~~ 538 (704)
.|.|.-++.+.. .....+ .++ .....++|+| ++.++++-.....+ .+.-+..+.
T Consensus 163 d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~ 241 (352)
T 2ism_A 163 DLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGG 241 (352)
T ss_dssp CTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTC
T ss_pred CCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCC
Confidence 245666665531 011112 222 3456789999 56655553333321 122222221
Q ss_pred ------------------EEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 005277 539 ------------------CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA 577 (704)
Q Consensus 539 ------------------~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~ 577 (704)
++..+ .+......++| .+|..+++....+.|...++.
T Consensus 242 nyGwp~~~g~~~~~~~~~p~~~~-~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~ 296 (352)
T 2ism_A 242 NYGWPRVVGRGNDPRYRDPLYFW-PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLE 296 (352)
T ss_dssp BCCTTTCCSCCCCTTSCCCSEEC-TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEE
T ss_pred cCCCCcccCCCCCCCCcCCeEec-CCCCCCcceEE-ECCEEEEEECCCCEEEEEEEC
Confidence 22223 22234566777 356665555555666666554
No 300
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.53 E-value=0.066 Score=60.42 Aligned_cols=158 Identities=8% Similarity=-0.056 Sum_probs=107.5
Q ss_pred cCeEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCC-CCEEEEEeCCCeEEEEECCCCceeE
Q 005277 422 GPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRIQPLR 499 (704)
Q Consensus 422 ~~V~~l~~sp~~~~l~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~-~~~l~sgs~dg~i~lwd~~~~~~~~ 499 (704)
..+.+++|++.+..|+ +-..++.|..++++.......+.........+++.+. ++.+++-...+.|.+.+++......
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~ 116 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV 116 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence 4578999999776666 5556789999998855443333333345678999875 4455665667899999997655444
Q ss_pred EeccCCCCeeEEEEcCCCCEEEEEEC--CCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEe-CCCeEEEEeC
Q 005277 500 IMAGHLSDVDCVRWHINCNYIATGSS--DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDL 576 (704)
Q Consensus 500 ~~~~~~~~V~~v~~~p~~~~l~tgs~--dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~-~dg~I~iwdl 576 (704)
...........++++|...+|+.... .+.|...++....... +...-.....|+++++++.|+.+. ..+.|..+|+
T Consensus 117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~-l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~ 195 (628)
T 4a0p_A 117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTT-LVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNM 195 (628)
T ss_dssp EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE-EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEE-EECCCCCcceEEEccccCEEEEEECCCCEEEEEcC
Confidence 44345566789999996656666542 5678888876444333 333456788999999877666654 5678999998
Q ss_pred CCCe
Q 005277 577 ASGR 580 (704)
Q Consensus 577 ~~~~ 580 (704)
....
T Consensus 196 dG~~ 199 (628)
T 4a0p_A 196 LGLN 199 (628)
T ss_dssp TSCS
T ss_pred CCCc
Confidence 6543
No 301
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.50 E-value=0.0096 Score=60.35 Aligned_cols=135 Identities=9% Similarity=0.031 Sum_probs=69.3
Q ss_pred CeEEEEeCCCCceeEE--eecCCcCeeEEEEcCCCCEEEEEeCC-----CeEEEEECCCCc---eeEEec--cCCCCeeE
Q 005277 443 TTIRLWSTKLNANLVC--YKGHNYPVWDVQFNPQGHYFASSSHD-----RTARIWSMDRIQ---PLRIMA--GHLSDVDC 510 (704)
Q Consensus 443 g~I~lwd~~~~~~~~~--~~~h~~~V~~v~~sp~~~~l~sgs~d-----g~i~lwd~~~~~---~~~~~~--~~~~~V~~ 510 (704)
..+.+||..+.+-... +.........+. -++..++.|+.+ ..+.+||..+.+ -...-. .......+
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~ 108 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGA 108 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeE
Confidence 3578888876542221 111111111222 257777777754 468899988765 322211 11111122
Q ss_pred EEEcCCCCEEEEEECC-----CcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCC-----CeEEEEeCCCCe
Q 005277 511 VRWHINCNYIATGSSD-----KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED-----GTIMMWDLASGR 580 (704)
Q Consensus 511 v~~~p~~~~l~tgs~d-----g~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~d-----g~I~iwdl~~~~ 580 (704)
+. .++.+++.|+.+ ..+.+||+.+++-...-..........+..-+++.++.|+.+ ..+.+||+.+.+
T Consensus 109 ~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~ 186 (301)
T 2vpj_A 109 TT--LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGH 186 (301)
T ss_dssp EE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred EE--ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCc
Confidence 22 256677777643 358899988765433221111111111122267777777754 457888887664
Q ss_pred e
Q 005277 581 C 581 (704)
Q Consensus 581 ~ 581 (704)
-
T Consensus 187 W 187 (301)
T 2vpj_A 187 W 187 (301)
T ss_dssp E
T ss_pred E
Confidence 3
No 302
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.49 E-value=0.014 Score=62.83 Aligned_cols=153 Identities=10% Similarity=0.101 Sum_probs=96.7
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEe-ecC-CcCeeEEEEcCCCCEEEEE-eCCCeEEEEECCC--Cc
Q 005277 423 PVYSASFSP-LGDFILSSSADTTIRLWSTKLNANLVCY-KGH-NYPVWDVQFNPQGHYFASS-SHDRTARIWSMDR--IQ 496 (704)
Q Consensus 423 ~V~~l~~sp-~~~~l~s~s~Dg~I~lwd~~~~~~~~~~-~~h-~~~V~~v~~sp~~~~l~sg-s~dg~i~lwd~~~--~~ 496 (704)
....++++| ++.+.++-..++.|+.++..++.....+ ... ...-..++|+|++++|+.+ ...+.|+.++.+. +.
T Consensus 229 ~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~ 308 (433)
T 4hw6_A 229 GAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGK 308 (433)
T ss_dssp SBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCC
T ss_pred CCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcc
Confidence 346688899 6665556667788999999877652222 211 1223469999999855544 5668899988753 21
Q ss_pred e--eEEeccC---------------CCCeeEEEE---------cCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCC---
Q 005277 497 P--LRIMAGH---------------LSDVDCVRW---------HINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR--- 547 (704)
Q Consensus 497 ~--~~~~~~~---------------~~~V~~v~~---------~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~--- 547 (704)
. ...+.+. ......+++ .+++++.++-...+.|+.++. +|... .+.+..
T Consensus 309 ~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~-t~~G~g~~~ 386 (433)
T 4hw6_A 309 LAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVT-TYAGRGNSR 386 (433)
T ss_dssp BCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEE-EEECCCTTC
T ss_pred cCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEE-EEEeCCCCC
Confidence 1 1222221 123556888 677777777667788999985 56433 333221
Q ss_pred ---------------CCEEEEEEe-cCCCEEEEEeCCCeEEEEeCC
Q 005277 548 ---------------SMILSLAMS-PDGRYMASGDEDGTIMMWDLA 577 (704)
Q Consensus 548 ---------------~~i~~l~~s-pdg~~l~sg~~dg~I~iwdl~ 577 (704)
.....|+++ ++|.++++=...+.|+.+++.
T Consensus 387 ~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 387 EWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp SSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred ccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 236789999 567666666667788887753
No 303
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.48 E-value=0.094 Score=54.61 Aligned_cols=203 Identities=10% Similarity=0.058 Sum_probs=108.4
Q ss_pred EeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEE
Q 005277 347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (704)
Q Consensus 347 ~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 426 (704)
+...-.....++|.|||+++++ ..+|.|++++-.. ...... .............
T Consensus 24 va~~l~~P~~ia~~pdG~l~V~-e~~g~I~~~d~~G--~~~~~~-----------------------~~v~~~g~~g~~g 77 (354)
T 3a9g_A 24 VASDLEVPWSIAPLGGGRYLVT-ERPGRLVLISPSG--KKLVAS-----------------------FDVANVGEAGLLG 77 (354)
T ss_dssp EECSCSCEEEEEEEETTEEEEE-ETTTEEEEECSSC--EEEEEE-----------------------CCCCCSTTCSEEE
T ss_pred EeCCCCCCeEEEEcCCCeEEEE-eCCCEEEEEeCCC--ceEeec-----------------------cceeecCCCceee
Confidence 3333456789999999985555 5669998886321 100000 0001112345789
Q ss_pred EEEcCC---CCEEEEEeC----C----CeEEEEeCCCCc-----e--e-EEeec-CCcCeeEEEEcCCCCEEEEEeC---
Q 005277 427 ASFSPL---GDFILSSSA----D----TTIRLWSTKLNA-----N--L-VCYKG-HNYPVWDVQFNPQGHYFASSSH--- 483 (704)
Q Consensus 427 l~~sp~---~~~l~s~s~----D----g~I~lwd~~~~~-----~--~-~~~~~-h~~~V~~v~~sp~~~~l~sgs~--- 483 (704)
|+|+|+ +..|+.+.. + +.|..|+..... . + ..+.. .......|.|.|+|.++++.+.
T Consensus 78 ia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~ 157 (354)
T 3a9g_A 78 LALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAAD 157 (354)
T ss_dssp EEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTC
T ss_pred EEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCC
Confidence 999998 555554432 3 567777766431 1 1 11221 1123467999999987776432
Q ss_pred ----------CCeEEEEECCCCc-------eeEEe-ccCCCCeeEEEEcC-CCCEEEEEECCC---cEEEEeCCCC----
Q 005277 484 ----------DRTARIWSMDRIQ-------PLRIM-AGHLSDVDCVRWHI-NCNYIATGSSDK---TVRLWDVSSG---- 537 (704)
Q Consensus 484 ----------dg~i~lwd~~~~~-------~~~~~-~~~~~~V~~v~~~p-~~~~l~tgs~dg---~I~iwd~~~~---- 537 (704)
.|.|.-++.+..- ....+ .++ .....++|+| ++.++++-...+ .|.+.. .+
T Consensus 158 ~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyG 234 (354)
T 3a9g_A 158 PRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYG 234 (354)
T ss_dssp GGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCC
T ss_pred CccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCC
Confidence 2455555554320 01122 233 3456899999 566555432221 133322 11
Q ss_pred --------------cEEEEeecCCCCEEEEEEe-------cCCCEEEEEeCCCeEEEEeCCC
Q 005277 538 --------------ECVRIFIGHRSMILSLAMS-------PDGRYMASGDEDGTIMMWDLAS 578 (704)
Q Consensus 538 --------------~~~~~~~~h~~~i~~l~~s-------pdg~~l~sg~~dg~I~iwdl~~ 578 (704)
.++..+.........++|. .+|.++++....+.|...++..
T Consensus 235 wp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~ 296 (354)
T 3a9g_A 235 WPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGD 296 (354)
T ss_dssp TTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECG
T ss_pred CCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECC
Confidence 1222331122457788883 4677777666667787777764
No 304
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.48 E-value=0.037 Score=60.05 Aligned_cols=153 Identities=15% Similarity=0.155 Sum_probs=95.8
Q ss_pred CeEEEEEcCC-CCEEEEE-eCCCeEEEEeCCCCceeEEeecC---CcCeeEEEE-------cCCCCEEEEEeCCC-----
Q 005277 423 PVYSASFSPL-GDFILSS-SADTTIRLWSTKLNANLVCYKGH---NYPVWDVQF-------NPQGHYFASSSHDR----- 485 (704)
Q Consensus 423 ~V~~l~~sp~-~~~l~s~-s~Dg~I~lwd~~~~~~~~~~~~h---~~~V~~v~~-------sp~~~~l~sgs~dg----- 485 (704)
....|+|.|. +..|+.+ ...+.|++.|+..+......... ......|+| +++|.+++++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 4678999983 5545544 44467888998866555444321 224789999 99999666665543
Q ss_pred --eEEEEECCC-Ccee-----EEeccCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCC-------CCcE----------
Q 005277 486 --TARIWSMDR-IQPL-----RIMAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVS-------SGEC---------- 539 (704)
Q Consensus 486 --~i~lwd~~~-~~~~-----~~~~~~~~~V~~v~~~p~-~~~l~tgs~dg~I~iwd~~-------~~~~---------- 539 (704)
.+.+++... +... +.+.. ......++++|+ +.++++-..++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 255665333 1111 22322 224467888995 5555566677889999987 5543
Q ss_pred -EEE-ee-cCCCCEEEEEEecCCCEEEEE-eCCCeEEEEeC
Q 005277 540 -VRI-FI-GHRSMILSLAMSPDGRYMASG-DEDGTIMMWDL 576 (704)
Q Consensus 540 -~~~-~~-~h~~~i~~l~~spdg~~l~sg-~~dg~I~iwdl 576 (704)
... +. +.......|+|+|+|++|+.+ .....|+.+|.
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence 111 21 233456899999999965554 46678888664
No 305
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.46 E-value=0.0095 Score=60.39 Aligned_cols=144 Identities=8% Similarity=0.014 Sum_probs=77.4
Q ss_pred CCCEEEEEeCC-----CeEEEEeCCCCc---eeE--EeecCCcCeeEEEEcCCCCEEEEEeCC-----CeEEEEECCCCc
Q 005277 432 LGDFILSSSAD-----TTIRLWSTKLNA---NLV--CYKGHNYPVWDVQFNPQGHYFASSSHD-----RTARIWSMDRIQ 496 (704)
Q Consensus 432 ~~~~l~s~s~D-----g~I~lwd~~~~~---~~~--~~~~h~~~V~~v~~sp~~~~l~sgs~d-----g~i~lwd~~~~~ 496 (704)
++..++.|+.+ ..+.+||..+.. -.. .+.........+.+ ++..++.|+.+ ..+.+||..+.+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~ 139 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ 139 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence 45666666654 468899988765 222 11111111122222 67777777643 368888987765
Q ss_pred eeEEe--ccCCCCeeEEEEcCCCCEEEEEECC-----CcEEEEeCCCCcEEEEeecCCC--CEEEEEEecCCCEEEEEeC
Q 005277 497 PLRIM--AGHLSDVDCVRWHINCNYIATGSSD-----KTVRLWDVSSGECVRIFIGHRS--MILSLAMSPDGRYMASGDE 567 (704)
Q Consensus 497 ~~~~~--~~~~~~V~~v~~~p~~~~l~tgs~d-----g~I~iwd~~~~~~~~~~~~h~~--~i~~l~~spdg~~l~sg~~ 567 (704)
-...- ........++. -++.+++.|+.+ ..+.+||+.+++-...-..... ...++. -+++.++.|+.
T Consensus 140 W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~ 215 (301)
T 2vpj_A 140 WSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL--LNDHIYVVGGF 215 (301)
T ss_dssp EEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCB
T ss_pred EEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE--ECCEEEEEeCC
Confidence 33322 11111112222 266777777654 4689999987754432111111 112222 26777777776
Q ss_pred C-----CeEEEEeCCCCee
Q 005277 568 D-----GTIMMWDLASGRC 581 (704)
Q Consensus 568 d-----g~I~iwdl~~~~~ 581 (704)
+ ..+.+||+.+.+-
T Consensus 216 ~~~~~~~~v~~yd~~~~~W 234 (301)
T 2vpj_A 216 DGTAHLSSVEAYNIRTDSW 234 (301)
T ss_dssp CSSSBCCCEEEEETTTTEE
T ss_pred CCCcccceEEEEeCCCCcE
Confidence 4 4688899877643
No 306
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.46 E-value=0.00074 Score=77.61 Aligned_cols=211 Identities=9% Similarity=0.036 Sum_probs=121.7
Q ss_pred CCEEEEEEcCCCCEEEEE-eCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEc
Q 005277 352 NGLNCASISQDGSLVAGG-FSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (704)
Q Consensus 352 ~~V~~~~fs~dg~~lasg-~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 430 (704)
..+..++|++.+..|... ...+.|+.+++....... .....+........+|++.
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~------------------------~~~~~i~~~~~~P~glavD 461 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS------------------------SYDTVISRDIQAPDGLAVD 461 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-C------------------------CCCCBCCSCC--CCCEECC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCc------------------------ceEEEEeCCCCCcceEEEE
Confidence 456678898865555444 456788888876410000 0000010111224567777
Q ss_pred CCCC-EEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEe-CC-CeEEEEECCCCceeEEeccCCCC
Q 005277 431 PLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-HD-RTARIWSMDRIQPLRIMAGHLSD 507 (704)
Q Consensus 431 p~~~-~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs-~d-g~i~lwd~~~~~~~~~~~~~~~~ 507 (704)
+.+. ++++-...+.|.++++........+.........|++.|.+.+|+.+. .. +.|..++++..............
T Consensus 462 ~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~ 541 (699)
T 1n7d_A 462 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQW 541 (699)
T ss_dssp CSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSS
T ss_pred eeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCC
Confidence 5444 444545678899999885544433333334567899999655444443 22 67888877654333333333445
Q ss_pred eeEEEEcCCCCEEEEE-ECCCcEEEEeCCCCcEEEEeec--CCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeee
Q 005277 508 VDCVRWHINCNYIATG-SSDKTVRLWDVSSGECVRIFIG--HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP 584 (704)
Q Consensus 508 V~~v~~~p~~~~l~tg-s~dg~I~iwd~~~~~~~~~~~~--h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~ 584 (704)
...|+|+|++..|+.+ +..+.|..+|+........+.. .......|++..+ .++++....+.|..+|..+++.+..
T Consensus 542 PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~ 620 (699)
T 1n7d_A 542 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNL 620 (699)
T ss_dssp CCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEEC
T ss_pred ccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEE
Confidence 6789999876555544 4567899999864333222221 1223445666543 4555556678999999888887777
Q ss_pred ecC
Q 005277 585 LMG 587 (704)
Q Consensus 585 ~~~ 587 (704)
+..
T Consensus 621 i~~ 623 (699)
T 1n7d_A 621 LAE 623 (699)
T ss_dssp CCT
T ss_pred eec
Confidence 654
No 307
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.39 E-value=0.13 Score=57.95 Aligned_cols=203 Identities=7% Similarity=-0.033 Sum_probs=129.2
Q ss_pred CCEEEEEEcCC-CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEc
Q 005277 352 NGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (704)
Q Consensus 352 ~~V~~~~fs~d-g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 430 (704)
..+..++|++. +.+.++-..++.|..++++..... ...........++++.
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~----------------------------~v~~~g~~~P~GlAvD 88 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALE----------------------------HVVEFGLDYPEGMAVD 88 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE----------------------------EEECSSCSCCCEEEEE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcE----------------------------EEEeCCCCCcceEEEE
Confidence 46789999986 445555566788888887642110 1111111345678887
Q ss_pred CCCCEEE-EEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEe--CCCeEEEEECCCCceeEEeccCCCC
Q 005277 431 PLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS--HDRTARIWSMDRIQPLRIMAGHLSD 507 (704)
Q Consensus 431 p~~~~l~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs--~dg~i~lwd~~~~~~~~~~~~~~~~ 507 (704)
+.+..|+ +-...+.|.+.+++.......+...-....+|++.|...+|+... ..+.|...+++......... ....
T Consensus 89 ~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-~~~~ 167 (628)
T 4a0p_A 89 WLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-NVGR 167 (628)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-SCSS
T ss_pred eCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC-CCCC
Confidence 7666554 555678899999875543333333344568999999544444444 25678888887655444433 4566
Q ss_pred eeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeee
Q 005277 508 VDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL 585 (704)
Q Consensus 508 V~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~ 585 (704)
...+++++++..|+.+. ..+.|..+|+..... ..+.........+++.. +..+++-...+.|...|..+++....+
T Consensus 168 P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l 244 (628)
T 4a0p_A 168 ANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTII 244 (628)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred cceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEE
Confidence 78999999877766664 567899999865443 34444444567888864 445555556789999998777554444
No 308
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.38 E-value=0.039 Score=57.53 Aligned_cols=138 Identities=14% Similarity=0.115 Sum_probs=78.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee--EEee---cCCcCeeEEEEcCC---CCEEEEEeC-C-----CeEE
Q 005277 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANL--VCYK---GHNYPVWDVQFNPQ---GHYFASSSH-D-----RTAR 488 (704)
Q Consensus 423 ~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~--~~~~---~h~~~V~~v~~sp~---~~~l~sgs~-d-----g~i~ 488 (704)
...+++|.|+++++ .+..+|.|++++ .+... ..+. ........|+|+|+ +..++++.. . +.|.
T Consensus 32 ~P~~ia~~pdG~l~-V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 32 VPWALAFLPDGGML-IAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp CEEEEEECTTSCEE-EEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEcCCCeEE-EEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 45789999999854 455679999998 34321 1111 12346789999998 445544433 2 6788
Q ss_pred EEECCCCc-----ee-EEec---cCCCCeeEEEEcCCCCEEEEEEC-------------CCcEEEEeCCC----------
Q 005277 489 IWSMDRIQ-----PL-RIMA---GHLSDVDCVRWHINCNYIATGSS-------------DKTVRLWDVSS---------- 536 (704)
Q Consensus 489 lwd~~~~~-----~~-~~~~---~~~~~V~~v~~~p~~~~l~tgs~-------------dg~I~iwd~~~---------- 536 (704)
.|+..... .+ ..+. +.......++|.|+|.+.++.+. .|.|.-++...
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~ 188 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLG 188 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTT
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccC
Confidence 88876431 11 1122 11123468999999976665432 14566666542
Q ss_pred ----CcEEEEeecCCCCEEEEEEec-CCCEEEEE
Q 005277 537 ----GECVRIFIGHRSMILSLAMSP-DGRYMASG 565 (704)
Q Consensus 537 ----~~~~~~~~~h~~~i~~l~~sp-dg~~l~sg 565 (704)
...+. -.++. ....++|+| +|.++++-
T Consensus 189 ~~~~~~~i~-a~G~r-np~g~a~d~~~g~l~v~d 220 (352)
T 2ism_A 189 RRGARPEVY-SLGHR-NPQGLAWHPKTGELFSSE 220 (352)
T ss_dssp CTTSCTTEE-EECCS-EECCCEECTTTCCEEEEE
T ss_pred CCCCCccEE-EEcCC-CcccEEEECCCCCEEEEE
Confidence 01111 12332 356788999 66655543
No 309
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.36 E-value=0.019 Score=58.23 Aligned_cols=141 Identities=8% Similarity=-0.002 Sum_probs=73.2
Q ss_pred EEEEEeC--CCeEEEEeCCCCceeEE--eecCCcCeeEEEEcCCCCEEEEEeCC----CeEEEEECCCCceeEEeccCCC
Q 005277 435 FILSSSA--DTTIRLWSTKLNANLVC--YKGHNYPVWDVQFNPQGHYFASSSHD----RTARIWSMDRIQPLRIMAGHLS 506 (704)
Q Consensus 435 ~l~s~s~--Dg~I~lwd~~~~~~~~~--~~~h~~~V~~v~~sp~~~~l~sgs~d----g~i~lwd~~~~~~~~~~~~~~~ 506 (704)
.++.|+. ...+.+||..+.+-... +.........+.+ ++..++.|+.+ ..+.+||..+.+-...-.....
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 91 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP 91 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence 3444543 35688888876543221 1111111122222 67777787754 6788899887653332221111
Q ss_pred --CeeEEEEcCCCCEEEEEECC------CcEEEEeCCCCcEEEEeecCCCC-EEEEEEecCCCEEEEEeC---------C
Q 005277 507 --DVDCVRWHINCNYIATGSSD------KTVRLWDVSSGECVRIFIGHRSM-ILSLAMSPDGRYMASGDE---------D 568 (704)
Q Consensus 507 --~V~~v~~~p~~~~l~tgs~d------g~I~iwd~~~~~~~~~~~~h~~~-i~~l~~spdg~~l~sg~~---------d 568 (704)
...++. -++.+++.|+.+ ..+.+||..+.+-...-...... -.+++. -+++.++.|+. -
T Consensus 92 r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~ 168 (306)
T 3ii7_A 92 RDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVL 168 (306)
T ss_dssp CBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEEC
T ss_pred ccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCccccc
Confidence 112222 266677777754 46899999887543321111111 111222 26677676653 3
Q ss_pred CeEEEEeCCCCe
Q 005277 569 GTIMMWDLASGR 580 (704)
Q Consensus 569 g~I~iwdl~~~~ 580 (704)
..+.+||+.+.+
T Consensus 169 ~~~~~yd~~~~~ 180 (306)
T 3ii7_A 169 NSCEVYDPATET 180 (306)
T ss_dssp CCEEEEETTTTE
T ss_pred ceEEEeCCCCCe
Confidence 457888887764
No 310
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.35 E-value=0.096 Score=54.50 Aligned_cols=150 Identities=10% Similarity=0.037 Sum_probs=78.4
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEc
Q 005277 351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (704)
Q Consensus 351 ~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 430 (704)
-.....++|.|+|+.|.++...|.|++++.......... ..........+....|+|+
T Consensus 17 l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~----------------------~~~~v~~~g~~g~~gia~~ 74 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLS----------------------GVPDVWAHGQGGLLDVVLA 74 (353)
T ss_dssp ESSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCB----------------------SCCCCCCSTTCSEEEEEEC
T ss_pred CCCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEec----------------------CCcccccCCCCCceeEEEC
Confidence 345789999999993344556799988874321000000 0000111123456899999
Q ss_pred CC---CCEEEEEe-C-------CCeEEEEeCCCCc----ee-EEeec------CCcCeeEEEEcCCCCEEEEEeC-----
Q 005277 431 PL---GDFILSSS-A-------DTTIRLWSTKLNA----NL-VCYKG------HNYPVWDVQFNPQGHYFASSSH----- 483 (704)
Q Consensus 431 p~---~~~l~s~s-~-------Dg~I~lwd~~~~~----~~-~~~~~------h~~~V~~v~~sp~~~~l~sgs~----- 483 (704)
|+ +.+|+.+. . ...|..|++.... .. ..+.. .......|.|.|+|.++++.+.
T Consensus 75 pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~ 154 (353)
T 2g8s_A 75 PDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRP 154 (353)
T ss_dssp TTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGG
T ss_pred CCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCC
Confidence 96 55555442 2 2356666664321 11 11111 1122467999999976665433
Q ss_pred --------CCeEEEEECCCCc------------eeEEeccCCCCeeEEEEcC-CCCEEEE
Q 005277 484 --------DRTARIWSMDRIQ------------PLRIMAGHLSDVDCVRWHI-NCNYIAT 522 (704)
Q Consensus 484 --------dg~i~lwd~~~~~------------~~~~~~~~~~~V~~v~~~p-~~~~l~t 522 (704)
.|.|.-++.+..- ....+.........++|+| ++.++++
T Consensus 155 ~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 155 TAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLN 214 (353)
T ss_dssp GGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEE
T ss_pred ccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEE
Confidence 2456666665420 1122222224467899999 5544443
No 311
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.27 E-value=0.023 Score=57.49 Aligned_cols=132 Identities=16% Similarity=0.154 Sum_probs=66.4
Q ss_pred eEEEEeCCCCceeEE--eecCCcCeeEEEEcCCCCEEEEEeCC-----CeEEEEECCCCceeEEeccCC--CCeeEEEEc
Q 005277 444 TIRLWSTKLNANLVC--YKGHNYPVWDVQFNPQGHYFASSSHD-----RTARIWSMDRIQPLRIMAGHL--SDVDCVRWH 514 (704)
Q Consensus 444 ~I~lwd~~~~~~~~~--~~~h~~~V~~v~~sp~~~~l~sgs~d-----g~i~lwd~~~~~~~~~~~~~~--~~V~~v~~~ 514 (704)
.+.+||..+..-... +......-..+.+ ++..++.|+.+ ..+.+||..+.+-...-.... ....++.
T Consensus 31 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-- 106 (302)
T 2xn4_A 31 SVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV-- 106 (302)
T ss_dssp CEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--
T ss_pred cEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE--
Confidence 577888776542221 1111111112222 67777777754 358888887764332211111 1112222
Q ss_pred CCCCEEEEEECCC-----cEEEEeCCCCcEEEEeecCCC-CEEEEEEecCCCEEEEEeCC-------CeEEEEeCCCCe
Q 005277 515 INCNYIATGSSDK-----TVRLWDVSSGECVRIFIGHRS-MILSLAMSPDGRYMASGDED-------GTIMMWDLASGR 580 (704)
Q Consensus 515 p~~~~l~tgs~dg-----~I~iwd~~~~~~~~~~~~h~~-~i~~l~~spdg~~l~sg~~d-------g~I~iwdl~~~~ 580 (704)
-++.+++.|+.++ .+.+||+.+.+-...-..... .-.+++. -+++.++.|+.+ ..+.+||+.+.+
T Consensus 107 ~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~ 184 (302)
T 2xn4_A 107 LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNE 184 (302)
T ss_dssp ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTE
T ss_pred ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCc
Confidence 2567777777553 578899887654332111111 1112222 266777776642 357888887654
No 312
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.26 E-value=0.13 Score=53.56 Aligned_cols=139 Identities=12% Similarity=0.075 Sum_probs=79.4
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-eeEEee---cCCcCeeEEEEcCC---CCEEEEEeC----C----Ce
Q 005277 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNA-NLVCYK---GHNYPVWDVQFNPQ---GHYFASSSH----D----RT 486 (704)
Q Consensus 422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~-~~~~~~---~h~~~V~~v~~sp~---~~~l~sgs~----d----g~ 486 (704)
....+++|.|+++ |+.+..+|.|++++. .+. .+..+. ........|+|+|+ +..|+++.. + +.
T Consensus 29 ~~P~~ia~~pdG~-l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-YLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTE-EEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCe-EEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 3467899999998 455566699999974 344 122111 12345789999997 445544433 3 56
Q ss_pred EEEEECCCC--c---e--e-EEec-cCCCCeeEEEEcCCCCEEEEEEC-------------CCcEEEEeCCCC-------
Q 005277 487 ARIWSMDRI--Q---P--L-RIMA-GHLSDVDCVRWHINCNYIATGSS-------------DKTVRLWDVSSG------- 537 (704)
Q Consensus 487 i~lwd~~~~--~---~--~-~~~~-~~~~~V~~v~~~p~~~~l~tgs~-------------dg~I~iwd~~~~------- 537 (704)
|..|+.... . . + ..+. ........++|.|+|.+.++.+. .|.|.-++....
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf 186 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPF 186 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSS
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCC
Confidence 777776543 1 1 1 1122 11123467999999987666432 245666655321
Q ss_pred --cEEEEeecCCCCEEEEEEec-CCCEEEE
Q 005277 538 --ECVRIFIGHRSMILSLAMSP-DGRYMAS 564 (704)
Q Consensus 538 --~~~~~~~~h~~~i~~l~~sp-dg~~l~s 564 (704)
..+. -.++.. ...++|+| +|+++++
T Consensus 187 ~~~~i~-a~G~rn-p~Gla~d~~~g~l~v~ 214 (354)
T 3a9g_A 187 PNSPIW-SYGHRN-PQGIDWHRASGVMVAT 214 (354)
T ss_dssp TTCCEE-EECCSC-CCEEEECTTTCCEEEE
T ss_pred CCCcEE-EEccCC-cceEEEeCCCCCEEEE
Confidence 1122 224443 45789999 6665554
No 313
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.25 E-value=0.022 Score=57.67 Aligned_cols=145 Identities=12% Similarity=0.105 Sum_probs=74.9
Q ss_pred CCCEEEEEeCC-----CeEEEEeCCCCceeEE--eecCCcCeeEEEEcCCCCEEEEEeCCC-----eEEEEECCCCceeE
Q 005277 432 LGDFILSSSAD-----TTIRLWSTKLNANLVC--YKGHNYPVWDVQFNPQGHYFASSSHDR-----TARIWSMDRIQPLR 499 (704)
Q Consensus 432 ~~~~l~s~s~D-----g~I~lwd~~~~~~~~~--~~~h~~~V~~v~~sp~~~~l~sgs~dg-----~i~lwd~~~~~~~~ 499 (704)
++..++.|+.+ ..+.+||..+.+-... +.........+.+ ++..++.|+.++ .+.+||+.+.+-..
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 138 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH 138 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence 45666666644 3578888876543221 1111111122222 677778887553 57788887654333
Q ss_pred EeccCCCC-eeEEEEcCCCCEEEEEEC-------CCcEEEEeCCCCcEEEEee--cCCCCEEEEEEecCCCEEEEEeCC-
Q 005277 500 IMAGHLSD-VDCVRWHINCNYIATGSS-------DKTVRLWDVSSGECVRIFI--GHRSMILSLAMSPDGRYMASGDED- 568 (704)
Q Consensus 500 ~~~~~~~~-V~~v~~~p~~~~l~tgs~-------dg~I~iwd~~~~~~~~~~~--~h~~~i~~l~~spdg~~l~sg~~d- 568 (704)
.-...... -.+++. -++.+++.|+. -..+.+||+.+++-...-. ........+. -++++++.|+.+
T Consensus 139 ~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~ 215 (302)
T 2xn4_A 139 VAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV--LNNLLYAVGGHDG 215 (302)
T ss_dssp ECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBSS
T ss_pred cCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE--ECCEEEEECCCCC
Confidence 21111111 112222 25666666653 2458899998775433211 1111112222 267777777764
Q ss_pred ----CeEEEEeCCCCee
Q 005277 569 ----GTIMMWDLASGRC 581 (704)
Q Consensus 569 ----g~I~iwdl~~~~~ 581 (704)
..+.+||+.+.+-
T Consensus 216 ~~~~~~~~~yd~~~~~W 232 (302)
T 2xn4_A 216 PLVRKSVEVYDPTTNAW 232 (302)
T ss_dssp SSBCCCEEEEETTTTEE
T ss_pred CcccceEEEEeCCCCCE
Confidence 3688888877643
No 314
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.20 E-value=0.045 Score=55.47 Aligned_cols=145 Identities=7% Similarity=0.020 Sum_probs=76.1
Q ss_pred CCCEEEEEeCC----CeEEEEeCCCCceeEE--eecCCcCeeEEEEcCCCCEEEEEeCC------CeEEEEECCCCceeE
Q 005277 432 LGDFILSSSAD----TTIRLWSTKLNANLVC--YKGHNYPVWDVQFNPQGHYFASSSHD------RTARIWSMDRIQPLR 499 (704)
Q Consensus 432 ~~~~l~s~s~D----g~I~lwd~~~~~~~~~--~~~h~~~V~~v~~sp~~~~l~sgs~d------g~i~lwd~~~~~~~~ 499 (704)
++..++.|+.+ ..+.+||..+.+-... +.........+.+ ++..++.|+.+ ..+.+||..+.+-..
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~ 132 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT 132 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence 45566666644 5688889887643222 1111111122222 67777888765 468889988765333
Q ss_pred EeccCCCCe-eEEEEcCCCCEEEEEEC---------CCcEEEEeCCCCcEEEEeecCCCC-EEEEEEecCCCEEEEEeCC
Q 005277 500 IMAGHLSDV-DCVRWHINCNYIATGSS---------DKTVRLWDVSSGECVRIFIGHRSM-ILSLAMSPDGRYMASGDED 568 (704)
Q Consensus 500 ~~~~~~~~V-~~v~~~p~~~~l~tgs~---------dg~I~iwd~~~~~~~~~~~~h~~~-i~~l~~spdg~~l~sg~~d 568 (704)
.-....... .+++. -++.+++.|+. -..+.+||+.+..-...-...... -.+++.. ++++++.|+.+
T Consensus 133 ~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~ 210 (306)
T 3ii7_A 133 KPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQN 210 (306)
T ss_dssp ECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEE
T ss_pred CCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCC
Confidence 211111111 11222 35666666653 345889999887543321111111 1122222 67777777653
Q ss_pred -----CeEEEEeCCCCe
Q 005277 569 -----GTIMMWDLASGR 580 (704)
Q Consensus 569 -----g~I~iwdl~~~~ 580 (704)
..+.+||+.+.+
T Consensus 211 ~~~~~~~~~~yd~~~~~ 227 (306)
T 3ii7_A 211 GLGGLDNVEYYDIKLNE 227 (306)
T ss_dssp TTEEBCCEEEEETTTTE
T ss_pred CCCCCceEEEeeCCCCc
Confidence 357888887764
No 315
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.16 E-value=0.26 Score=49.85 Aligned_cols=204 Identities=11% Similarity=0.205 Sum_probs=130.9
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEE
Q 005277 358 SISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFIL 437 (704)
Q Consensus 358 ~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~ 437 (704)
-.+|..+.||.-. ...++|+|+.... ...... ...+|.-=.|-.+. .|+
T Consensus 73 IMnP~~~ViALra-g~~LQiFnletK~----------------------------klks~~-~~e~VvfWkWis~~-~L~ 121 (365)
T 2xzh_A 73 IMNPASKVIALKA-GKTLQIFNIEMKS----------------------------KMKAHT-MTDDVTFWKWISLN-TVA 121 (365)
T ss_dssp EECSSSSEEEEEE-TTEEEEEETTTTE----------------------------EEEEEE-CSSCEEEEEECSSS-EEE
T ss_pred eeCCCccEEEEec-CCeEEEechHHhh----------------------------hhccee-cCCccEEEEecCCC-eEE
Confidence 3477777777665 6789999998622 111111 13467777776544 444
Q ss_pred EEeCCCeEEEEeCCC-CceeEEeecC----CcCeeEEEEcCCCCEEEEEe-------CCCeEEEEECCCCceeEEeccCC
Q 005277 438 SSSADTTIRLWSTKL-NANLVCYKGH----NYPVWDVQFNPQGHYFASSS-------HDRTARIWSMDRIQPLRIMAGHL 505 (704)
Q Consensus 438 s~s~Dg~I~lwd~~~-~~~~~~~~~h----~~~V~~v~~sp~~~~l~sgs-------~dg~i~lwd~~~~~~~~~~~~~~ 505 (704)
-.+. ..|.-|++.. ..+...+..| ...|..-..+++.++++..+ -.|.+.+|..++. ..+.+.||.
T Consensus 122 lVT~-taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGha 199 (365)
T 2xzh_A 122 LVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHA 199 (365)
T ss_dssp EEES-SEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSE
T ss_pred EEcC-CcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceeeeee
Confidence 4443 4799999975 3455666554 35577778888889877654 3478899999874 556677776
Q ss_pred CCeeEEEEcCC---CCEEEEEEC---CCcEEEEeCCCC---------cEEEEeecC---CCCEEEEEEecCCCEEEEEeC
Q 005277 506 SDVDCVRWHIN---CNYIATGSS---DKTVRLWDVSSG---------ECVRIFIGH---RSMILSLAMSPDGRYMASGDE 567 (704)
Q Consensus 506 ~~V~~v~~~p~---~~~l~tgs~---dg~I~iwd~~~~---------~~~~~~~~h---~~~i~~l~~spdg~~l~sg~~ 567 (704)
.....+...-+ .+.++.+.. .+.+++.++... +.+..+... .+-..++..|+.-..++.-+.
T Consensus 200 a~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK 279 (365)
T 2xzh_A 200 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK 279 (365)
T ss_dssp EEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEET
T ss_pred eeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeC
Confidence 54443333211 223443332 258999988432 122222222 345668888888888999999
Q ss_pred CCeEEEEeCCCCeeeeeecCCCceeee
Q 005277 568 DGTIMMWDLASGRCVTPLMGHTSCVWT 594 (704)
Q Consensus 568 dg~I~iwdl~~~~~~~~~~~h~~~V~s 594 (704)
-|.|++||+.++.++..-+-...+|..
T Consensus 280 ~G~ihlyDleTgt~i~~nrIS~d~iF~ 306 (365)
T 2xzh_A 280 YGYIHLYDLETGTCIYMNRISGETIFV 306 (365)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred CcEEEEEEcccCcEEEEeccCCCceEE
Confidence 999999999999998776655555543
No 316
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.09 E-value=0.39 Score=50.53 Aligned_cols=206 Identities=12% Similarity=0.220 Sum_probs=132.5
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEE
Q 005277 357 ASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFI 436 (704)
Q Consensus 357 ~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l 436 (704)
.-.+|..+.||.=. ...++|+|+.... ...... ...+|.-=.|-.+ +.|
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnle~K~----------------------------klks~~-~~e~VvfWkWis~-~~l 119 (494)
T 1bpo_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKS----------------------------KMKAHT-MTDDVTFWKWISL-NTV 119 (494)
T ss_dssp EEECSSSSCEEEEE-TTEEEEEETTTTE----------------------------EEEEEE-CSSCCCEEEEEET-TEE
T ss_pred eeeCCCCcEEEEec-CCeEEEEchHHhh----------------------------hhccee-cCCCceEEEecCC-CeE
Confidence 34567777777664 6789999998622 111111 1234555566543 345
Q ss_pred EEEeCCCeEEEEeCCC-CceeEEeecC----CcCeeEEEEcCCCCEEEEEe-------CCCeEEEEECCCCceeEEeccC
Q 005277 437 LSSSADTTIRLWSTKL-NANLVCYKGH----NYPVWDVQFNPQGHYFASSS-------HDRTARIWSMDRIQPLRIMAGH 504 (704)
Q Consensus 437 ~s~s~Dg~I~lwd~~~-~~~~~~~~~h----~~~V~~v~~sp~~~~l~sgs-------~dg~i~lwd~~~~~~~~~~~~~ 504 (704)
+-.+ +..|.-|++.. ..++..+..| ...|..-..+++.++++..| -.|.+.+|..++. ..+.+.||
T Consensus 120 ~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGh 197 (494)
T 1bpo_A 120 ALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGH 197 (494)
T ss_dssp EEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCS
T ss_pred EEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheee
Confidence 5444 35799999974 3456666654 35677778888999887654 3478999999875 45667788
Q ss_pred CCCeeEEEEcCC---CCEEEEEECC---CcEEEEeCCCC---------cEEEEeec---CCCCEEEEEEecCCCEEEEEe
Q 005277 505 LSDVDCVRWHIN---CNYIATGSSD---KTVRLWDVSSG---------ECVRIFIG---HRSMILSLAMSPDGRYMASGD 566 (704)
Q Consensus 505 ~~~V~~v~~~p~---~~~l~tgs~d---g~I~iwd~~~~---------~~~~~~~~---h~~~i~~l~~spdg~~l~sg~ 566 (704)
......+....+ .+.++.+... +.+++.++... +.+..+.. ..+-..++..|+.-..++.-+
T Consensus 198 aa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviT 277 (494)
T 1bpo_A 198 AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT 277 (494)
T ss_dssp EEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEE
T ss_pred eeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEe
Confidence 665554444321 2344444432 78999988532 12222222 234566889999888899999
Q ss_pred CCCeEEEEeCCCCeeeeeecCCCceeeee
Q 005277 567 EDGTIMMWDLASGRCVTPLMGHTSCVWTL 595 (704)
Q Consensus 567 ~dg~I~iwdl~~~~~~~~~~~h~~~V~sl 595 (704)
.-|.|++||+.++.++..-+-...+|...
T Consensus 278 K~G~i~lyDleTgt~i~~nrIs~~~iF~t 306 (494)
T 1bpo_A 278 KYGYIHLYDLETGTCIYMNRISGETIFVT 306 (494)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred cCceEEEEecccceeeeeecccCCceEEe
Confidence 99999999999999987766555555443
No 317
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.03 E-value=0.036 Score=56.39 Aligned_cols=143 Identities=10% Similarity=-0.005 Sum_probs=71.6
Q ss_pred CCCEEEEEeC----CCeEEEEeCCCCceeEE--eecCCcCeeEEEEcCCCCEEEEEeC----C-----CeEEEEECCCCc
Q 005277 432 LGDFILSSSA----DTTIRLWSTKLNANLVC--YKGHNYPVWDVQFNPQGHYFASSSH----D-----RTARIWSMDRIQ 496 (704)
Q Consensus 432 ~~~~l~s~s~----Dg~I~lwd~~~~~~~~~--~~~h~~~V~~v~~sp~~~~l~sgs~----d-----g~i~lwd~~~~~ 496 (704)
++..++.|+. -..+.+||..+.+-... +....... +++.. ++..++.|+. + ..+.+||..+.+
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~ 101 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ 101 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEEE-CCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence 3455555553 23578888876543221 11111111 22222 5667777765 2 457888887654
Q ss_pred eeEEe--ccCCCCeeEEEEcCCCCEEEEEECC-----CcEEEEeCCCCcEEEEee--cCCCCEEEEEEecCCCEEEEEeC
Q 005277 497 PLRIM--AGHLSDVDCVRWHINCNYIATGSSD-----KTVRLWDVSSGECVRIFI--GHRSMILSLAMSPDGRYMASGDE 567 (704)
Q Consensus 497 ~~~~~--~~~~~~V~~v~~~p~~~~l~tgs~d-----g~I~iwd~~~~~~~~~~~--~h~~~i~~l~~spdg~~l~sg~~ 567 (704)
-...- ........++. -++.+++.|+.+ ..+.+||..+.+-...-. .....-.++.+ +++.++.|+.
T Consensus 102 W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~ 177 (308)
T 1zgk_A 102 WSPCAPMSVPRNRIGVGV--IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGF 177 (308)
T ss_dssp EEECCCCSSCCBTCEEEE--ETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred EeECCCCCcCccccEEEE--ECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCC
Confidence 32221 11111122222 256677776643 468899988765333211 11111122222 6777777765
Q ss_pred C-----CeEEEEeCCCCe
Q 005277 568 D-----GTIMMWDLASGR 580 (704)
Q Consensus 568 d-----g~I~iwdl~~~~ 580 (704)
+ ..+.+||+.+.+
T Consensus 178 ~~~~~~~~~~~yd~~~~~ 195 (308)
T 1zgk_A 178 DGTNRLNSAECYYPERNE 195 (308)
T ss_dssp CSSCBCCCEEEEETTTTE
T ss_pred CCCCcCceEEEEeCCCCe
Confidence 4 457888877654
No 318
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.90 E-value=0.5 Score=48.71 Aligned_cols=210 Identities=13% Similarity=0.135 Sum_probs=108.8
Q ss_pred EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeE
Q 005277 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (704)
Q Consensus 346 ~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 425 (704)
++...-..-..++|.|||+++++-...|.|++++........... .-.......+...
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~----------------------~~~v~~~g~~Gll 83 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGE----------------------VPGVSPSGEGGLL 83 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE----------------------CTTCCCBTTBSEE
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecc----------------------cCceeecCCCCce
Confidence 344445667899999999987777558999888743211100000 0001122345688
Q ss_pred EEEEcCC---CCEEEEE---eCCCeEEEEeCCCCc--------e--eE-Eee-cCCcCeeEEEEcCCCCEEEEEeC----
Q 005277 426 SASFSPL---GDFILSS---SADTTIRLWSTKLNA--------N--LV-CYK-GHNYPVWDVQFNPQGHYFASSSH---- 483 (704)
Q Consensus 426 ~l~~sp~---~~~l~s~---s~Dg~I~lwd~~~~~--------~--~~-~~~-~h~~~V~~v~~sp~~~~l~sgs~---- 483 (704)
.|+|+|+ +.+|+.+ ..++.|.-|.+..+. . +. .+. ........|.|.|+|.++++.+.
T Consensus 84 Gia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~ 163 (347)
T 3das_A 84 GIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDT 163 (347)
T ss_dssp EEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCG
T ss_pred eeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCC
Confidence 9999996 4445433 244556666655411 1 11 121 11223467999999987777542
Q ss_pred ---------CCeEEEEECCCCc-------eeEEec-cCCCCeeEEEEcCCCCEEEEE-ECCCcEEEEeCCCCc-------
Q 005277 484 ---------DRTARIWSMDRIQ-------PLRIMA-GHLSDVDCVRWHINCNYIATG-SSDKTVRLWDVSSGE------- 538 (704)
Q Consensus 484 ---------dg~i~lwd~~~~~-------~~~~~~-~~~~~V~~v~~~p~~~~l~tg-s~dg~I~iwd~~~~~------- 538 (704)
.|.|.-.+.+..- ....+. +| .....++|+|++.+.++- +.++.-.|--+..|.
T Consensus 164 ~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~-RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~ 242 (347)
T 3das_A 164 GLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGH-RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEA 242 (347)
T ss_dssp GGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCC-SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTC
T ss_pred ccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCC-CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcc
Confidence 3445444554320 112222 34 346689999987665543 223322332222221
Q ss_pred -----------EEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCC
Q 005277 539 -----------CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579 (704)
Q Consensus 539 -----------~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~ 579 (704)
++..+..+......++|. +|..++..-..+.|....+...
T Consensus 243 ~g~~~~~~~~~P~~~~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~ 293 (347)
T 3das_A 243 EGKGGGSGFHDPVAQWSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGT 293 (347)
T ss_dssp CSSCCCTTCCCCSEEECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETT
T ss_pred cCCCCCccccCCcEecCCCCCCCcceEEE-cCceeeccccCCEEEEEEecCC
Confidence 122232222355667776 4555555544555555555433
No 319
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.86 E-value=0.25 Score=51.27 Aligned_cols=153 Identities=14% Similarity=0.167 Sum_probs=92.3
Q ss_pred CeEEEEEcCCCCEEEEE------------eCCCeEEEEeCCCC--ce-eEEeec-----CCcCeeEEEEcC--CCC-EEE
Q 005277 423 PVYSASFSPLGDFILSS------------SADTTIRLWSTKLN--AN-LVCYKG-----HNYPVWDVQFNP--QGH-YFA 479 (704)
Q Consensus 423 ~V~~l~~sp~~~~l~s~------------s~Dg~I~lwd~~~~--~~-~~~~~~-----h~~~V~~v~~sp--~~~-~l~ 479 (704)
....+...|+|..++++ ..+|.|.++|..+. +. ...+.+ .......+.+.+ ++. +|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 45677788877655554 26899999998742 21 112222 224566777765 343 444
Q ss_pred EEe-C--CCeEEEEECCCCce----eEEeccC-CCCeeEEEEcCCCCEEEEEEC-----------------CCcEEEEeC
Q 005277 480 SSS-H--DRTARIWSMDRIQP----LRIMAGH-LSDVDCVRWHINCNYIATGSS-----------------DKTVRLWDV 534 (704)
Q Consensus 480 sgs-~--dg~i~lwd~~~~~~----~~~~~~~-~~~V~~v~~~p~~~~l~tgs~-----------------dg~I~iwd~ 534 (704)
++. . +.++.+|+++.... +..+.+. ....+.+.+.++|.+.++... .|.|.-+|.
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 443 2 46788887765322 2233322 235778999999987776541 244555554
Q ss_pred CCCcEEEEeecCCCCEEEEEEecCCCEEEEEe-CCCeEEEEeCCC
Q 005277 535 SSGECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLAS 578 (704)
Q Consensus 535 ~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~-~dg~I~iwdl~~ 578 (704)
++.. .....-...+.++|+|||+.|+.+. ..+.|..|++..
T Consensus 211 --~~~~-~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 211 --NDVR-VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp --TCCE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred --CeEE-EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 3322 2222334578999999998877665 568899999863
No 320
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.84 E-value=0.14 Score=53.03 Aligned_cols=151 Identities=12% Similarity=0.197 Sum_probs=92.1
Q ss_pred cCeEEEEEcC--CCC-EEEEE-eC--CCeEEEEeCCCCce----eEEeecC-CcCeeEEEEcCCCCEEEEEeC-------
Q 005277 422 GPVYSASFSP--LGD-FILSS-SA--DTTIRLWSTKLNAN----LVCYKGH-NYPVWDVQFNPQGHYFASSSH------- 483 (704)
Q Consensus 422 ~~V~~l~~sp--~~~-~l~s~-s~--Dg~I~lwd~~~~~~----~~~~~~h-~~~V~~v~~sp~~~~l~sgs~------- 483 (704)
.....+.+.+ ++. +|+.+ .. +.+|.+|+++.... +..+.+. -....++.+.++|.+.++...
T Consensus 112 f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~ 191 (355)
T 3sre_A 112 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYL 191 (355)
T ss_dssp CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHH
T ss_pred eeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCccc
Confidence 3455666655 344 34444 22 57888988775432 2233322 235789999999987776541
Q ss_pred ----------CCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCC-CcE--EEEeecCCCC
Q 005277 484 ----------DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSS-GEC--VRIFIGHRSM 549 (704)
Q Consensus 484 ----------dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~~-~~~--~~~~~~h~~~ 549 (704)
.|.+..+|. ++ +..+......-+.++|+|+++.|+++. ..+.|+.|++.. +.. .+.+ ...+.
T Consensus 192 ~~~e~~~~~~~g~vyr~d~--~~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~ 267 (355)
T 3sre_A 192 KSWEMHLGLAWSFVTYYSP--ND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTL 267 (355)
T ss_dssp HHHHHHTTCCCEEEEEECT--TC-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSE
T ss_pred ccchhhccCCccEEEEEEC--Ce-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCC
Confidence 234444444 32 333333445678999999998887765 568899999863 332 2334 23456
Q ss_pred EEEEEEec-CCCEEEEEeCC-CeEEEEeC
Q 005277 550 ILSLAMSP-DGRYMASGDED-GTIMMWDL 576 (704)
Q Consensus 550 i~~l~~sp-dg~~l~sg~~d-g~I~iwdl 576 (704)
.-.+++.+ +|++.+++..+ +.|..||.
T Consensus 268 PDGi~vD~e~G~lwva~~~~g~~v~~~~P 296 (355)
T 3sre_A 268 VDNISVDPVTGDLWVGCHPNGMRIFFYDA 296 (355)
T ss_dssp EEEEEECTTTCCEEEEEESCHHHHHSCCT
T ss_pred CceEEEeCCCCcEEEEecCCceEEEEECC
Confidence 78889998 58877766544 34554553
No 321
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.82 E-value=0.72 Score=49.61 Aligned_cols=112 Identities=11% Similarity=0.084 Sum_probs=60.2
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEc
Q 005277 351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (704)
Q Consensus 351 ~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 430 (704)
-.....++|.|||+++++-...+.|++++............ . .........+....|+|+
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~-~-------------------~~~~~~~g~~Gllgia~~ 85 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQV-P-------------------EIVNDADGQNGLLGFAFH 85 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC-T-------------------TCCCCTTSSCSEEEEEEC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecC-C-------------------ccccccCCCCceeEEEEC
Confidence 44678999999999777654445687776432111000000 0 000000124567899999
Q ss_pred CC---CCEEEEEeC-------------CCeEEEEeCCCCc-------eeEE-ee-cCCcCeeEEEEcCCCCEEEEEe
Q 005277 431 PL---GDFILSSSA-------------DTTIRLWSTKLNA-------NLVC-YK-GHNYPVWDVQFNPQGHYFASSS 482 (704)
Q Consensus 431 p~---~~~l~s~s~-------------Dg~I~lwd~~~~~-------~~~~-~~-~h~~~V~~v~~sp~~~~l~sgs 482 (704)
|+ +.+|+.+.. ...|.-|+..... .+.. +. ........|.|.|+|.++++.+
T Consensus 86 Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 86 PDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp TTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CCcCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 96 555554432 2345555543221 1111 21 1123468999999998777654
No 322
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.81 E-value=0.088 Score=53.57 Aligned_cols=147 Identities=5% Similarity=-0.039 Sum_probs=73.4
Q ss_pred CCCCEEEEEeC-----C------CeEEEEeCCCCceeE--EeecCCcCeeEEEEcCCCCEEEEEeCC--------CeEEE
Q 005277 431 PLGDFILSSSA-----D------TTIRLWSTKLNANLV--CYKGHNYPVWDVQFNPQGHYFASSSHD--------RTARI 489 (704)
Q Consensus 431 p~~~~l~s~s~-----D------g~I~lwd~~~~~~~~--~~~~h~~~V~~v~~sp~~~~l~sgs~d--------g~i~l 489 (704)
.++..++.|+. . ..+.+||..+.+-.. .+.........+.+ ++..++.|+.+ ..+.+
T Consensus 44 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~ 121 (315)
T 4asc_A 44 KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMC 121 (315)
T ss_dssp TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEE
T ss_pred ECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEE
Confidence 46676666763 1 126778887654321 11111111111222 56677777632 45888
Q ss_pred EECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEEC-C-----CcEEEEeCCCCcEEEEeecCCCC-EEEEEEecCCCEE
Q 005277 490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-D-----KTVRLWDVSSGECVRIFIGHRSM-ILSLAMSPDGRYM 562 (704)
Q Consensus 490 wd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~-d-----g~I~iwd~~~~~~~~~~~~h~~~-i~~l~~spdg~~l 562 (704)
||..+.+-...-..........+..-++.+++.|+. + ..+.+||..+.+-...-...... -.+++ .-+++.+
T Consensus 122 ~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iy 200 (315)
T 4asc_A 122 YDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGAT-VHDGRII 200 (315)
T ss_dssp EETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEE
T ss_pred ECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEE-EECCEEE
Confidence 898775432211111111111111235667777765 2 46899999876533221111111 11222 2267777
Q ss_pred EEEeCCC-----eEEEEeCCCCe
Q 005277 563 ASGDEDG-----TIMMWDLASGR 580 (704)
Q Consensus 563 ~sg~~dg-----~I~iwdl~~~~ 580 (704)
+.|+.++ .+.+||+.+.+
T Consensus 201 v~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 201 VAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp EEEEECSSSEEEEEEEEETTTTE
T ss_pred EEeccCCCCccceEEEEECCCCe
Confidence 7887654 57888887764
No 323
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.81 E-value=0.11 Score=52.96 Aligned_cols=141 Identities=9% Similarity=-0.061 Sum_probs=70.8
Q ss_pred EEEEeCCCeEEEEeCCCCceeE-EeecCCcCeeEEEEcCCCCEEEEEeC-----C------CeEEEEECCCCceeEEecc
Q 005277 436 ILSSSADTTIRLWSTKLNANLV-CYKGHNYPVWDVQFNPQGHYFASSSH-----D------RTARIWSMDRIQPLRIMAG 503 (704)
Q Consensus 436 l~s~s~Dg~I~lwd~~~~~~~~-~~~~h~~~V~~v~~sp~~~~l~sgs~-----d------g~i~lwd~~~~~~~~~~~~ 503 (704)
++.|+ ..+.+||..+.+-.. .+..............++..++.|+. . ..+..||..+.+-.. +..
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~~~ 84 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG-MPP 84 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE-CCC
T ss_pred EEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEE-CCC
Confidence 34454 468899988766432 11111122222233447788888873 1 126778887654322 111
Q ss_pred CCCC-e-eEEEEcCCCCEEEEEECC--------CcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeC-C----
Q 005277 504 HLSD-V-DCVRWHINCNYIATGSSD--------KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE-D---- 568 (704)
Q Consensus 504 ~~~~-V-~~v~~~p~~~~l~tgs~d--------g~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~-d---- 568 (704)
-..+ . .+++. -++.+++.|+.+ ..+.+||..+++-...-..........+..-+++.++.|+. +
T Consensus 85 ~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~ 163 (315)
T 4asc_A 85 LPSPRCLFGLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKC 163 (315)
T ss_dssp BSSCEESCEEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCB
T ss_pred CCcchhceeEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcc
Confidence 1111 0 11222 256666666632 45899999877533211111111111122236777777775 2
Q ss_pred -CeEEEEeCCCCe
Q 005277 569 -GTIMMWDLASGR 580 (704)
Q Consensus 569 -g~I~iwdl~~~~ 580 (704)
..+.+||+.+.+
T Consensus 164 ~~~~~~yd~~~~~ 176 (315)
T 4asc_A 164 LNKMCVYDPKKFE 176 (315)
T ss_dssp CCCEEEEETTTTE
T ss_pred cceEEEEeCCCCe
Confidence 468888887654
No 324
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.80 E-value=0.13 Score=54.10 Aligned_cols=142 Identities=16% Similarity=0.166 Sum_probs=97.2
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCceeEEeecC---Cc-CeeEEEEcCCCCEEEEEeCCCeEEEEECCCCc---------
Q 005277 430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKGH---NY-PVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ--------- 496 (704)
Q Consensus 430 sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h---~~-~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~--------- 496 (704)
+.+|..++.+- ++.||.-++.....-+.++.. .. .|..+..+|+|.++|..+. ..|.|..+..+.
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccc
Confidence 34566666654 468888888755444444432 22 6888999999999998864 688888876221
Q ss_pred ---eeEEecc------CCCCeeEEEEcCC---CCEEEEEECCCcEEEEeCCCC--cEEEEee---------cCCCCEEEE
Q 005277 497 ---PLRIMAG------HLSDVDCVRWHIN---CNYIATGSSDKTVRLWDVSSG--ECVRIFI---------GHRSMILSL 553 (704)
Q Consensus 497 ---~~~~~~~------~~~~V~~v~~~p~---~~~l~tgs~dg~I~iwd~~~~--~~~~~~~---------~h~~~i~~l 553 (704)
..+.+.- ...+|..+.|||- +..|++-..|+.|++||+... ++. .+. .....|.++
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~ 185 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDL 185 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEE
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEE
Confidence 1223321 2467999999994 578999999999999999752 222 222 122568899
Q ss_pred EEecCCCEEEEEe--CCCeEEEE
Q 005277 554 AMSPDGRYMASGD--EDGTIMMW 574 (704)
Q Consensus 554 ~~spdg~~l~sg~--~dg~I~iw 574 (704)
+|.++|-.|...+ ..|.|+-.
T Consensus 186 ~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 186 EFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EECTTSSCEEEEECTTSCEEEEE
T ss_pred EEcCCCcEEEEEecCCCCCEEEE
Confidence 9999887777755 77877654
No 325
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.71 E-value=0.31 Score=50.62 Aligned_cols=141 Identities=12% Similarity=0.067 Sum_probs=77.2
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEe-------ecCCcCeeEEEEcCC---CCEEEEE-eC-------
Q 005277 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY-------KGHNYPVWDVQFNPQ---GHYFASS-SH------- 483 (704)
Q Consensus 422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~-------~~h~~~V~~v~~sp~---~~~l~sg-s~------- 483 (704)
....+|+|.|++++|+.+...|.|++++.. +.....+ .........|+|+|+ +..|..+ +.
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 346799999999844455667999999854 3221111 112345689999995 4444443 22
Q ss_pred CCeEEEEECCCCc----eeE-Eecc------CCCCeeEEEEcCCCCEEEEEEC-------------CCcEEEEeCCCCc-
Q 005277 484 DRTARIWSMDRIQ----PLR-IMAG------HLSDVDCVRWHINCNYIATGSS-------------DKTVRLWDVSSGE- 538 (704)
Q Consensus 484 dg~i~lwd~~~~~----~~~-~~~~------~~~~V~~v~~~p~~~~l~tgs~-------------dg~I~iwd~~~~~- 538 (704)
...|..|+.+... ... .+.. ....-..+.|.|+|.+.++.+. .|.|.-++....-
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 2356666664321 111 1211 1112457999999965555433 2456666654220
Q ss_pred -----------EEEEe-ecCCCCEEEEEEec-CCCEEEE
Q 005277 539 -----------CVRIF-IGHRSMILSLAMSP-DGRYMAS 564 (704)
Q Consensus 539 -----------~~~~~-~~h~~~i~~l~~sp-dg~~l~s 564 (704)
....+ .++. ....++|+| +|++.++
T Consensus 177 ~~npf~~~~~~~~~i~a~G~r-np~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGIR-NPQGMAMNPWSNALWLN 214 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECCS-EEEEEEEETTTTEEEEE
T ss_pred CCCCCcCCCCCCccEEEEcCc-CccceEEECCCCCEEEE
Confidence 11111 2343 367899999 5654443
No 326
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.70 E-value=1.4 Score=50.83 Aligned_cols=194 Identities=9% Similarity=0.068 Sum_probs=112.6
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEc
Q 005277 351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (704)
Q Consensus 351 ~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 430 (704)
++.|+|+.-..+|. |..|+.+| +..||-.... .. . . ........|.++.-.
T Consensus 21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~~~--~~-~----------------~--------~~~~~~~~i~~i~~d 71 (758)
T 3ott_A 21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYSTQ--QH-F----------------T--------YGENNNTRIYCGVII 71 (758)
T ss_dssp CCCEEEEEECTTSC-EEEEESSC-EEEECSSCEE--EC-S----------------C--------TTSTTSSCEEEEEEE
T ss_pred cceEEEEEECCCCC-EEEEECCC-ccccCCCceE--EE-E----------------c--------cCCCCCceEEEEEEc
Confidence 56799999888875 56677787 4445521100 00 0 0 000123468888777
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec----cCCC
Q 005277 431 PLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA----GHLS 506 (704)
Q Consensus 431 p~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~----~~~~ 506 (704)
.++ .|..|+.+| +..||..+.............|+++... +| .+..|+.+ -+..+|..+.+...... ....
T Consensus 72 ~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~~-~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~ 146 (758)
T 3ott_A 72 DNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMALQ-GD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNN 146 (758)
T ss_dssp TTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEEE-TT-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCS
T ss_pred CCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEec-CC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCC
Confidence 665 466666665 7889987654322111122357776543 44 57777765 68888887654332211 1234
Q ss_pred CeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecC-----CCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCee
Q 005277 507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH-----RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC 581 (704)
Q Consensus 507 ~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h-----~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~ 581 (704)
.|.++....++.+. .|+.+ -+..+|..+++........ ...|.++...+++..|..|+. +-+..+|..+++.
T Consensus 147 ~i~~i~~d~~g~lW-igt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~ 223 (758)
T 3ott_A 147 TIYSIIRTKDNQIY-VGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQI 223 (758)
T ss_dssp CEEEEEECTTCCEE-EEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEE
T ss_pred eEEEEEEcCCCCEE-EEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeE
Confidence 57788777776644 45554 4788888776543321111 224888888887775555654 4588889877653
No 327
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.69 E-value=0.071 Score=54.11 Aligned_cols=144 Identities=15% Similarity=0.108 Sum_probs=74.2
Q ss_pred CCCEEEEEeC----C-----CeEEEEeCCCCceeEE--eecCCcCeeEEEEcCCCCEEEEEeCC-----CeEEEEECCCC
Q 005277 432 LGDFILSSSA----D-----TTIRLWSTKLNANLVC--YKGHNYPVWDVQFNPQGHYFASSSHD-----RTARIWSMDRI 495 (704)
Q Consensus 432 ~~~~l~s~s~----D-----g~I~lwd~~~~~~~~~--~~~h~~~V~~v~~sp~~~~l~sgs~d-----g~i~lwd~~~~ 495 (704)
++..++.|+. + ..+.+||..+.+-... +.........+.+ ++..++.|+.+ ..+.+||..+.
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 147 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD 147 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence 4555555554 2 3578888876542221 1111111122222 67777777643 45788888765
Q ss_pred ceeEEec--cCCCCeeEEEEcCCCCEEEEEECC-----CcEEEEeCCCCcEEEEee--cCCCCEEEEEEecCCCEEEEEe
Q 005277 496 QPLRIMA--GHLSDVDCVRWHINCNYIATGSSD-----KTVRLWDVSSGECVRIFI--GHRSMILSLAMSPDGRYMASGD 566 (704)
Q Consensus 496 ~~~~~~~--~~~~~V~~v~~~p~~~~l~tgs~d-----g~I~iwd~~~~~~~~~~~--~h~~~i~~l~~spdg~~l~sg~ 566 (704)
+-...-. .......++.+ ++.+++.|+.+ ..+.+||+.+.+-...-. .......++.+ +++.++.|+
T Consensus 148 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG 223 (308)
T 1zgk_A 148 EWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGG 223 (308)
T ss_dssp EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECC
T ss_pred eEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeC
Confidence 4322211 11111122222 56677777654 458999988765332211 11111222222 677777777
Q ss_pred CC-----CeEEEEeCCCCee
Q 005277 567 ED-----GTIMMWDLASGRC 581 (704)
Q Consensus 567 ~d-----g~I~iwdl~~~~~ 581 (704)
.+ ..+.+||+.+.+-
T Consensus 224 ~~~~~~~~~v~~yd~~~~~W 243 (308)
T 1zgk_A 224 YDGQDQLNSVERYDVETETW 243 (308)
T ss_dssp BCSSSBCCCEEEEETTTTEE
T ss_pred CCCCCccceEEEEeCCCCcE
Confidence 54 4688889877643
No 328
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.51 E-value=1.2 Score=47.88 Aligned_cols=103 Identities=11% Similarity=0.096 Sum_probs=60.1
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE--Eeec------CCcCeeEEEEcCC---CCEEEEEeC-------
Q 005277 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV--CYKG------HNYPVWDVQFNPQ---GHYFASSSH------- 483 (704)
Q Consensus 422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~--~~~~------h~~~V~~v~~sp~---~~~l~sgs~------- 483 (704)
....+|+|.|+|+++++-...+.|++++..++.... .+.. .......|+|+|+ +.+|..+..
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 345799999999976665444578888865554322 2211 2345679999995 444444432
Q ss_pred ------CCeEEEEECCCC-----ceeEE---ec-cCCCCeeEEEEcCCCCEEEEEE
Q 005277 484 ------DRTARIWSMDRI-----QPLRI---MA-GHLSDVDCVRWHINCNYIATGS 524 (704)
Q Consensus 484 ------dg~i~lwd~~~~-----~~~~~---~~-~~~~~V~~v~~~p~~~~l~tgs 524 (704)
...|.-|+.+.. ..... +. ........|+|.|+|.+.++.+
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 234555554321 11111 21 1123468899999998777644
No 329
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.46 E-value=0.28 Score=49.87 Aligned_cols=147 Identities=7% Similarity=0.061 Sum_probs=72.5
Q ss_pred cCCCCEEEEEeC----CC-------eEEEEeCCCCceeEE--eecCCcCeeEEEEcCCCCEEEEEeCC-------CeEEE
Q 005277 430 SPLGDFILSSSA----DT-------TIRLWSTKLNANLVC--YKGHNYPVWDVQFNPQGHYFASSSHD-------RTARI 489 (704)
Q Consensus 430 sp~~~~l~s~s~----Dg-------~I~lwd~~~~~~~~~--~~~h~~~V~~v~~sp~~~~l~sgs~d-------g~i~l 489 (704)
..++..++.|+. ++ .+.+||..+.+-... +.........+.+ ++..++.|+.+ ..+.+
T Consensus 54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~ 131 (318)
T 2woz_A 54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLC 131 (318)
T ss_dssp CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEE
T ss_pred EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEE
Confidence 345666677763 11 266778765543221 1111111112222 67777777754 35778
Q ss_pred EECCCCceeEEeccCCCCe-eEEEEcCCCCEEEEEEC------CCcEEEEeCCCCcEEEEeecCCC-CEEEEEEecCCCE
Q 005277 490 WSMDRIQPLRIMAGHLSDV-DCVRWHINCNYIATGSS------DKTVRLWDVSSGECVRIFIGHRS-MILSLAMSPDGRY 561 (704)
Q Consensus 490 wd~~~~~~~~~~~~~~~~V-~~v~~~p~~~~l~tgs~------dg~I~iwd~~~~~~~~~~~~h~~-~i~~l~~spdg~~ 561 (704)
||..+.+-...-....... .+++. .++.+++.|+. -..+.+||+.+.+-...-..... .-.+++. -+++.
T Consensus 132 yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i 209 (318)
T 2woz_A 132 YDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKI 209 (318)
T ss_dssp EETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEE
T ss_pred EeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEE
Confidence 8887654332211111111 11222 46666677653 24589999988754332111111 1112222 26777
Q ss_pred EEEEeCC-----CeEEEEeCCCCe
Q 005277 562 MASGDED-----GTIMMWDLASGR 580 (704)
Q Consensus 562 l~sg~~d-----g~I~iwdl~~~~ 580 (704)
++.|+.+ ..+.+||+.+.+
T Consensus 210 yv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 210 VIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp EEEEEEETTEEEEEEEEEETTTCC
T ss_pred EEEcCcCCCCccceEEEEECCCCe
Confidence 7777643 356788887654
No 330
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.42 E-value=2.3 Score=51.34 Aligned_cols=187 Identities=12% Similarity=0.155 Sum_probs=102.6
Q ss_pred eCCCCEEEEEEcCC------CCEEEEEeC-CCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccC--
Q 005277 349 NTHNGLNCASISQD------GSLVAGGFS-DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG-- 419 (704)
Q Consensus 349 ~~~~~V~~~~fs~d------g~~lasg~~-dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 419 (704)
.-...|.|+++.|. ++++|+|+. |++|+|+++........ ..+.+
T Consensus 551 ~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~--------------------------~~L~~~~ 604 (1158)
T 3ei3_A 551 EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHK--------------------------EMLGGEI 604 (1158)
T ss_dssp ECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEE--------------------------EECCSSC
T ss_pred CCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEE--------------------------EECCCCC
Confidence 34568999999863 479999997 99999999975322111 01110
Q ss_pred CccCeEEEEEcCCCCEEEEEeCCCeEEEEeCC--CCceeE---EeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 005277 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTK--LNANLV---CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR 494 (704)
Q Consensus 420 h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~--~~~~~~---~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~ 494 (704)
-...|.-+.+ ....+|..|-.||.+.-+.++ ++.... .+-| ..++.-..+...|..-+.+..++...++.-+.
T Consensus 605 ~p~si~l~~~-~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~ 682 (1158)
T 3ei3_A 605 IPRSILMTTF-ESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSDRPTVIYSSNH 682 (1158)
T ss_dssp CEEEEEEEEE-TTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEESSSCEEEEESSS
T ss_pred CCcEEEEEEe-CCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEECCCCEEEEEcCC
Confidence 1112322333 234578899999998665544 443321 2233 44666555555554444444455555555432
Q ss_pred CceeEEeccCCCCee-EEEEcCC--CCEEEEEECCCcEEEEeCCCCc--EEEEeecCCCCEEEEEEecCCCEEEEEeC
Q 005277 495 IQPLRIMAGHLSDVD-CVRWHIN--CNYIATGSSDKTVRLWDVSSGE--CVRIFIGHRSMILSLAMSPDGRYMASGDE 567 (704)
Q Consensus 495 ~~~~~~~~~~~~~V~-~v~~~p~--~~~l~tgs~dg~I~iwd~~~~~--~~~~~~~h~~~i~~l~~spdg~~l~sg~~ 567 (704)
+.. ...-....+. ...|+.. .+-++.. .++.++|..+..-. .++.+ .-...+..++++|..+.++.+..
T Consensus 683 -~l~-~s~l~~~~v~~~~~F~se~~~~g~v~~-~~~~LrI~~i~~~~~~~~~~i-pL~~Tprri~y~~~~~~~~v~~~ 756 (1158)
T 3ei3_A 683 -KLV-FSNVNLKEVNYMCPLNSDGYPDSLALA-NNSTLTIGTIDEIQKLHIRTV-PLYESPRKICYQEVSQCFGVLSS 756 (1158)
T ss_dssp -SEE-EEEBSSSCCCEEEEECCSSSTTEEEEE-CSSCEEEEEECCSSSEEEEEE-ECSSEEEEEEEEGGGTEEEEEEE
T ss_pred -ceE-EeccChHHhceEeccCcccCCCcEEEE-cCCceEEEEecccCCeeEEEE-eCCCCceEEEEcCCCCEEEEEEE
Confidence 222 1111222333 3345432 2334433 45669988775432 23333 23467899999998887666543
No 331
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.37 E-value=0.36 Score=48.97 Aligned_cols=135 Identities=7% Similarity=0.004 Sum_probs=67.0
Q ss_pred eEEEEeCCCCceeEE-eecCCcCeeEEEEcCCCCEEEEEeC----CC-------eEEEEECCCCceeEE--eccCCCCee
Q 005277 444 TIRLWSTKLNANLVC-YKGHNYPVWDVQFNPQGHYFASSSH----DR-------TARIWSMDRIQPLRI--MAGHLSDVD 509 (704)
Q Consensus 444 ~I~lwd~~~~~~~~~-~~~h~~~V~~v~~sp~~~~l~sgs~----dg-------~i~lwd~~~~~~~~~--~~~~~~~V~ 509 (704)
.+.+||..+.+-... ...............++..++.|+. ++ .+..||..+.+-... +........
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 104 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFG 104 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCE
T ss_pred ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccc
Confidence 478888887654331 1111111222233447778888873 12 167788776543222 111111112
Q ss_pred EEEEcCCCCEEEEEECC-------CcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeC------CCeEEEEeC
Q 005277 510 CVRWHINCNYIATGSSD-------KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE------DGTIMMWDL 576 (704)
Q Consensus 510 ~v~~~p~~~~l~tgs~d-------g~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~------dg~I~iwdl 576 (704)
.+.+ ++.+++.|+.+ ..+.+||..+.+-...-..........+...+++.++.|+. -..+.+||+
T Consensus 105 ~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~ 182 (318)
T 2woz_A 105 LGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNP 182 (318)
T ss_dssp EEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEET
T ss_pred eEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcC
Confidence 2222 56677777754 34888998876543321111111111112246777777764 235888888
Q ss_pred CCCe
Q 005277 577 ASGR 580 (704)
Q Consensus 577 ~~~~ 580 (704)
.+.+
T Consensus 183 ~~~~ 186 (318)
T 2woz_A 183 KKGD 186 (318)
T ss_dssp TTTE
T ss_pred CCCE
Confidence 7764
No 332
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.31 E-value=1.4 Score=46.45 Aligned_cols=242 Identities=12% Similarity=0.145 Sum_probs=137.7
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCC-CceeEEeccCC
Q 005277 427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR-IQPLRIMAGHL 505 (704)
Q Consensus 427 l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~-~~~~~~~~~~~ 505 (704)
.-.+|..+.++.=. ..++.|+|+++...+..+.-.. +|.--.|-.+. .++..+ +..|+-|+++. ..|...|..|.
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvFdR~~ 146 (494)
T 1bpo_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHS 146 (494)
T ss_dssp EEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEEECCG
T ss_pred eeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhheecch
Confidence 44567777666544 5799999999999888887544 56566666443 444443 47899999974 46777777653
Q ss_pred ----CCeeEEEEcCCCCEEEEEE-------CCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCC---CEEEEEeC---C
Q 005277 506 ----SDVDCVRWHINCNYIATGS-------SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG---RYMASGDE---D 568 (704)
Q Consensus 506 ----~~V~~v~~~p~~~~l~tgs-------~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg---~~l~sg~~---d 568 (704)
..|..-..+++.++++..+ -.|.+.+|.+..+. .+.+.||.+.-..+.+..+. ..++.+.. .
T Consensus 147 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g 225 (494)
T 1bpo_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 225 (494)
T ss_dssp GGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTC
T ss_pred hcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeeeeeeEEEecCCCCCCceEEEEEEecCCC
Confidence 4566677788899887543 24778999986554 34566776544433332111 23333332 2
Q ss_pred CeEEEEeCCCC-eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcE
Q 005277 569 GTIMMWDLASG-RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTV 647 (704)
Q Consensus 569 g~I~iwdl~~~-~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V 647 (704)
+.++|.++... ..- .........+.|.+ .....+.+. .-+|+.-.+++.-+.-|.|
T Consensus 226 ~kLhi~Ei~~~~~~~---~~f~kk~vdv~fpp-------------e~~~DFPva-------mqvs~kygviyviTK~G~i 282 (494)
T 1bpo_A 226 GKLHIIEVGTPPTGN---QPFPKKAVDVFFPP-------------EAQNDFPVA-------MQISEKHDVVFLITKYGYI 282 (494)
T ss_dssp CEEEEEECSCCCTTC---CCCCCEEEECCCCT-------------TSTTCCEEE-------EEEETTTTEEEEEETTSEE
T ss_pred cEEEEEEcCCCccCC---CCccceeeeeeCCc-------------ccccCceeE-------EEecccCCEEEEEecCceE
Confidence 78888888542 000 01111111221100 000001000 0116677788889999999
Q ss_pred EEEeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecC
Q 005277 648 KLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS 701 (704)
Q Consensus 648 ~iWd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~d 701 (704)
++||+.++..+....-.... --+.......+.|.+ .+++|+.|.+.-.+
T Consensus 283 ~lyDleTgt~i~~nrIs~~~---iF~t~~~~~~~Gi~~--Vnr~GqVl~v~v~e 331 (494)
T 1bpo_A 283 HLYDLETGTCIYMNRISGET---IFVTAPHEATAGIIG--VNRKGQVLSVCVEE 331 (494)
T ss_dssp EEEETTTCCEEEEEECCSSC---EEEEEEETTTTEEEE--EETTCEEEEEEECT
T ss_pred EEEecccceeeeeecccCCc---eEEecccCCCCcEEE--EccCceEEEEEEcc
Confidence 99999999876443211110 111222233344443 34777777765544
No 333
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.25 E-value=0.32 Score=51.14 Aligned_cols=103 Identities=17% Similarity=0.158 Sum_probs=70.4
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeEEeccC----CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCc-----------
Q 005277 474 QGHYFASSSHDRTARIWSMDRIQPLRIMAGH----LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE----------- 538 (704)
Q Consensus 474 ~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~----~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~----------- 538 (704)
+|.-++.+- ++.||.-++.....-+.+... ...|..+..+|+|++||..+ +..|.|..+..+.
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHT
T ss_pred CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccc
Confidence 444444432 366666666533334444322 23688899999999999985 5589998887321
Q ss_pred -EEEEeec------CCCCEEEEEEecC---CCEEEEEeCCCeEEEEeCCC
Q 005277 539 -CVRIFIG------HRSMILSLAMSPD---GRYMASGDEDGTIMMWDLAS 578 (704)
Q Consensus 539 -~~~~~~~------h~~~i~~l~~spd---g~~l~sg~~dg~I~iwdl~~ 578 (704)
..+.+.- ...+|..+.|+|- |..|++-..|+.|++||+..
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 1223332 2567999999994 56899999999999999986
No 334
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.14 E-value=0.3 Score=46.59 Aligned_cols=135 Identities=11% Similarity=0.016 Sum_probs=81.0
Q ss_pred CCEEEEEeCCCeEEEEeCCCCce------eEEeec-CCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCce------eE
Q 005277 433 GDFILSSSADTTIRLWSTKLNAN------LVCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP------LR 499 (704)
Q Consensus 433 ~~~l~s~s~Dg~I~lwd~~~~~~------~~~~~~-h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~------~~ 499 (704)
...|+....| +++.=....+.. ...+-. -=..+.+++|+|+|.+.++ .+|.+.-.+..+... -.
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t 80 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAK 80 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCE
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccccc
Confidence 4456677777 666655444331 122221 1246789999999997777 667766666544211 11
Q ss_pred Ee-ccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcE-------EEEeecCCCCEEEEEEecCCCEEEEEeCCCeE
Q 005277 500 IM-AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC-------VRIFIGHRSMILSLAMSPDGRYMASGDEDGTI 571 (704)
Q Consensus 500 ~~-~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~-------~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I 571 (704)
.+ ...-....++.|.|+|.+.++ .||.|+-++-.+... ..+-..--..+..|.|.|+|.+.++. ||.+
T Consensus 81 ~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~l 156 (236)
T 1tl2_A 81 KIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQF 156 (236)
T ss_dssp EEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred EecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcE
Confidence 11 111112578999999988888 569998888643211 11111122468999999999877666 7775
Q ss_pred EEE
Q 005277 572 MMW 574 (704)
Q Consensus 572 ~iw 574 (704)
.-+
T Consensus 157 yr~ 159 (236)
T 1tl2_A 157 YKA 159 (236)
T ss_dssp EEE
T ss_pred Eec
Confidence 433
No 335
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.06 E-value=0.17 Score=52.47 Aligned_cols=93 Identities=11% Similarity=0.127 Sum_probs=45.0
Q ss_pred CCCEEEEEeC-CCeEEEEeCCC--C--ceeEEee-cCCcCeeEEEEcCCCCEEEEEeC-C---------CeEEEEECCCC
Q 005277 432 LGDFILSSSA-DTTIRLWSTKL--N--ANLVCYK-GHNYPVWDVQFNPQGHYFASSSH-D---------RTARIWSMDRI 495 (704)
Q Consensus 432 ~~~~l~s~s~-Dg~I~lwd~~~--~--~~~~~~~-~h~~~V~~v~~sp~~~~l~sgs~-d---------g~i~lwd~~~~ 495 (704)
++..++.|+. ...+.++|..+ . ..+..+. ........+.+ ++..++.|+. + ..+.+||..+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 4555555543 34688888864 2 1222222 11111122222 5777777765 2 46888898775
Q ss_pred ceeEEeccC-CCCeeEEEEcCCCCEEEEEECC
Q 005277 496 QPLRIMAGH-LSDVDCVRWHINCNYIATGSSD 526 (704)
Q Consensus 496 ~~~~~~~~~-~~~V~~v~~~p~~~~l~tgs~d 526 (704)
+-...-... .......+...++.+++.|+.+
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVN 128 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEEETTEEEEEECCC
T ss_pred cEEECCCCCCcccccceEEEECCEEEEEeCcC
Confidence 433221111 1111111222567777888754
No 336
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.94 E-value=1.8 Score=44.49 Aligned_cols=146 Identities=16% Similarity=0.163 Sum_probs=84.0
Q ss_pred ccCCccCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE--e----ecCCcCeeEEEEcCC---CCEEEEE-e--CC
Q 005277 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVC--Y----KGHNYPVWDVQFNPQ---GHYFASS-S--HD 484 (704)
Q Consensus 417 ~~~h~~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~--~----~~h~~~V~~v~~sp~---~~~l~sg-s--~d 484 (704)
+...-.....|+|.|+++++++--..|.|++++...+..... + .........|+++|+ +.+|... + .+
T Consensus 27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~ 106 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD 106 (347)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence 333344568999999999776665589999998765543211 1 122456789999995 3344332 2 44
Q ss_pred CeEEEEECCCC--------ceeEE---ec-cCCCCeeEEEEcCCCCEEEEEEC-------------CCcEEEEeCCCC--
Q 005277 485 RTARIWSMDRI--------QPLRI---MA-GHLSDVDCVRWHINCNYIATGSS-------------DKTVRLWDVSSG-- 537 (704)
Q Consensus 485 g~i~lwd~~~~--------~~~~~---~~-~~~~~V~~v~~~p~~~~l~tgs~-------------dg~I~iwd~~~~-- 537 (704)
+.|.-|..... ..... +. .....-..|.|.|+|.+.++.+. .|.|.-.+....
T Consensus 107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip 186 (347)
T 3das_A 107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPA 186 (347)
T ss_dssp EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBC
T ss_pred CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCcc
Confidence 56666665541 11111 21 11123467999999987776432 355555554321
Q ss_pred -------cEEEEeecCCCCEEEEEEecCCCEEEE
Q 005277 538 -------ECVRIFIGHRSMILSLAMSPDGRYMAS 564 (704)
Q Consensus 538 -------~~~~~~~~h~~~i~~l~~spdg~~l~s 564 (704)
..+. -.+|.+ ...++|+|+|.+.++
T Consensus 187 ~~nPf~~~~i~-a~G~RN-p~Gla~dp~G~L~~~ 218 (347)
T 3das_A 187 PGNPFPGSPVY-SYGHRN-VQGLAWDDKQRLFAS 218 (347)
T ss_dssp TTCSSTTCCEE-EBCCSB-CCEEEECTTCCEEEE
T ss_pred CCCCCCCCeEE-eeCCCC-cceEEECCCCCEEEE
Confidence 1122 225543 457899998776554
No 337
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.88 E-value=0.25 Score=59.51 Aligned_cols=202 Identities=11% Similarity=0.224 Sum_probs=121.2
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEE
Q 005277 359 ISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILS 438 (704)
Q Consensus 359 fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s 438 (704)
.+|..+.||.-. ..+++|+|+...... .... ...+|.-=.|-.+.. |+-
T Consensus 73 MnP~~~iiALra-g~~lQiFnl~~k~kl----------------------------ks~~-~~e~VvfWkWis~~~-l~l 121 (1630)
T 1xi4_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKM----------------------------KAHT-MTDDVTFWKWISLNT-VAL 121 (1630)
T ss_pred cCCCcceEEEec-CCeEEEeehHHhhhh----------------------------cccc-cCCCceEEEecCCCe-eEE
Confidence 456666666553 678999998762111 1111 124566666764443 443
Q ss_pred EeCCCeEEEEeCCC-CceeEEeecC----CcCeeEEEEcCCCCEEEEEe-------CCCeEEEEECCCCceeEEeccCCC
Q 005277 439 SSADTTIRLWSTKL-NANLVCYKGH----NYPVWDVQFNPQGHYFASSS-------HDRTARIWSMDRIQPLRIMAGHLS 506 (704)
Q Consensus 439 ~s~Dg~I~lwd~~~-~~~~~~~~~h----~~~V~~v~~sp~~~~l~sgs-------~dg~i~lwd~~~~~~~~~~~~~~~ 506 (704)
.+ +..|.-|++.. ..++..+..| ...|..-..+++.++++..| -.|.+.+|+.+.. ..+.+.||..
T Consensus 122 VT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~ 199 (1630)
T 1xi4_A 122 VT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAA 199 (1630)
T ss_pred Ec-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHh
Confidence 33 34799999974 2344444444 45677778888888877554 4588999998764 3445566765
Q ss_pred CeeEEEEc--C-CCCEEEEEEC---CCcEEEEeCCCC---c------EEEEeecC---CCCEEEEEEecCCCEEEEEeCC
Q 005277 507 DVDCVRWH--I-NCNYIATGSS---DKTVRLWDVSSG---E------CVRIFIGH---RSMILSLAMSPDGRYMASGDED 568 (704)
Q Consensus 507 ~V~~v~~~--p-~~~~l~tgs~---dg~I~iwd~~~~---~------~~~~~~~h---~~~i~~l~~spdg~~l~sg~~d 568 (704)
....+... + ..+.++.+.. .+.++|.++... . .+..+... .+-..++..|+.-..+..-+.-
T Consensus 200 ~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~ 279 (1630)
T 1xi4_A 200 SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKY 279 (1630)
T ss_pred hhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecC
Confidence 55444432 1 1233333322 368888888432 1 11112111 2334567888877788888999
Q ss_pred CeEEEEeCCCCeeeeeecCCCceee
Q 005277 569 GTIMMWDLASGRCVTPLMGHTSCVW 593 (704)
Q Consensus 569 g~I~iwdl~~~~~~~~~~~h~~~V~ 593 (704)
|.|+++|+.+|.++..-+-...+|.
T Consensus 280 G~~~~~d~~t~~~i~~~ris~~~iF 304 (1630)
T 1xi4_A 280 GYIHLYDLETGTCIYMNRISGETIF 304 (1630)
T ss_pred ceEEEEecccchhhhhccccCCceE
Confidence 9999999999988765543444443
No 338
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.81 E-value=0.043 Score=56.55 Aligned_cols=142 Identities=9% Similarity=0.007 Sum_probs=85.0
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeEEeecC-CcCeeEEEEc--CCCCEEEEE--eCCCeEEEEECCCCceeEEecc----C
Q 005277 434 DFILSSSADTTIRLWSTKLNANLVCYKGH-NYPVWDVQFN--PQGHYFASS--SHDRTARIWSMDRIQPLRIMAG----H 504 (704)
Q Consensus 434 ~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h-~~~V~~v~~s--p~~~~l~sg--s~dg~i~lwd~~~~~~~~~~~~----~ 504 (704)
..++.++.||.|.-+|..+|+....+... ..++....-. +.+..++.+ +.||.+..++..++.....+.. .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 46889999999999999999999888754 1232221100 112234433 5899999999887754433321 1
Q ss_pred CCCeeE----EEEc----CCCCEEEEEECCCcEEEEeCCCCcEEEEeecCC--CC-----EEEEEEe-----cCCCEEEE
Q 005277 505 LSDVDC----VRWH----INCNYIATGSSDKTVRLWDVSSGECVRIFIGHR--SM-----ILSLAMS-----PDGRYMAS 564 (704)
Q Consensus 505 ~~~V~~----v~~~----p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~--~~-----i~~l~~s-----pdg~~l~s 564 (704)
.+++.. +... ..+..+++|+.+|.+...|+++|+.+..+.... +. ..|.... -.+..|+.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i 170 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI 170 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence 122221 0000 145688999999999999999999999886331 11 1111111 12356777
Q ss_pred EeCCCeEEEEe
Q 005277 565 GDEDGTIMMWD 575 (704)
Q Consensus 565 g~~dg~I~iwd 575 (704)
|..+..+.+.+
T Consensus 171 g~~~y~v~~~~ 181 (339)
T 2be1_A 171 GKTIFELGIHS 181 (339)
T ss_dssp EEEEEECEECC
T ss_pred ecceEEEEEEC
Confidence 77766666666
No 339
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.80 E-value=0.17 Score=48.30 Aligned_cols=140 Identities=16% Similarity=0.067 Sum_probs=83.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee------EEee--cCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 005277 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANL------VCYK--GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR 494 (704)
Q Consensus 423 ~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~------~~~~--~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~ 494 (704)
.+..++|+|++.+.+. .+|.+.-.+..+.... ..+- +... ..++.|.|+|.+.++ .||.|+-++--+
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 6779999998885555 6677666665442221 1111 1111 478999999998887 569888777532
Q ss_pred Cce-------eEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcE------EEEe-ecCCCCEEEEEEecCCC
Q 005277 495 IQP-------LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC------VRIF-IGHRSMILSLAMSPDGR 560 (704)
Q Consensus 495 ~~~-------~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~------~~~~-~~h~~~i~~l~~spdg~ 560 (704)
... ..+-...-..+.+|.|.|+|.+.++. |+.++-+...++.. ...+ .......+.+.|.|+|.
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~ 194 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT 194 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCc
Confidence 111 11112223568999999999888777 77765544332211 1111 12233455577888887
Q ss_pred EEEEEeCCCeE
Q 005277 561 YMASGDEDGTI 571 (704)
Q Consensus 561 ~l~sg~~dg~I 571 (704)
..++. +|.+
T Consensus 195 l~~v~--~g~~ 203 (236)
T 1tl2_A 195 LFGVQ--GGKF 203 (236)
T ss_dssp EEEEE--TTEE
T ss_pred EEEEe--CCeE
Confidence 76665 6633
No 340
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.55 E-value=1.5 Score=44.13 Aligned_cols=140 Identities=9% Similarity=0.066 Sum_probs=84.6
Q ss_pred EEEcCCCCEEEEEeC--------------CCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEe----CCCeEE
Q 005277 427 ASFSPLGDFILSSSA--------------DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS----HDRTAR 488 (704)
Q Consensus 427 l~~sp~~~~l~s~s~--------------Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs----~dg~i~ 488 (704)
--+++++.+|+-+.. ...|+..+++...... +... + +..|++++.+++-.. .+..|.
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy 132 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDPD--P--CIYASLIGNYIYYLHYDTQTATSLY 132 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EECS--C--EEEEEEETTEEEEEEESSSSCEEEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eecC--C--ccEEEEeCCEEEEEeecCCCCceEE
Confidence 345788888875543 2467778887665333 2211 2 236777888887765 344566
Q ss_pred EEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEEC-CCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeC
Q 005277 489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE 567 (704)
Q Consensus 489 lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~-dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~ 567 (704)
..+++.....+... +.. ..|+|+++.|+-.+. ...|...++..+...+.+.+ ... ..++|++.+|+-...
T Consensus 133 ~~~~dGs~~~~lt~-~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~ 203 (302)
T 3s25_A 133 RIRIDGEEKKKIKN-HYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDV 203 (302)
T ss_dssp EEETTSCCCEEEES-SCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEG
T ss_pred EEECCCCCeEEEeC-CCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEc
Confidence 66666544443333 322 345678888876654 67888888877665554432 222 346699998886654
Q ss_pred C--CeEEEEeCCCCe
Q 005277 568 D--GTIMMWDLASGR 580 (704)
Q Consensus 568 d--g~I~iwdl~~~~ 580 (704)
+ ..|..-++..+.
T Consensus 204 ~~~~~I~~~~ldG~~ 218 (302)
T 3s25_A 204 NRDNAIVHVNINNPN 218 (302)
T ss_dssp GGTTEEEEECSSSCC
T ss_pred CCCcEEEEEECCCCC
Confidence 3 356666766544
No 341
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=95.35 E-value=2.8 Score=42.47 Aligned_cols=207 Identities=10% Similarity=0.105 Sum_probs=128.3
Q ss_pred EEeeCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCC----c
Q 005277 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH----S 421 (704)
Q Consensus 346 ~~~~~~~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h----~ 421 (704)
..+.....|.-=.|-.+.. |+.-+ +..|.-|++.... .+.+.+.-| .
T Consensus 101 ks~~~~e~VvfWkWis~~~-L~lVT-~taVyHWs~~~~s---------------------------~P~kvFdR~~~L~~ 151 (365)
T 2xzh_A 101 KAHTMTDDVTFWKWISLNT-VALVT-DNAVYHWSMEGES---------------------------QPVKMFDRHSSLAG 151 (365)
T ss_dssp EEEECSSCEEEEEECSSSE-EEEEE-SSEEEEEESSTTC---------------------------CCEEEEECCGGGTT
T ss_pred cceecCCccEEEEecCCCe-EEEEc-CCcEEEEcccCCC---------------------------CCceeeecchhccc
Confidence 3344456777777755443 44443 5679999986411 111111111 2
Q ss_pred cCeEEEEEcCCCCEEEEEe-------CCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCC---CCEEEEEeC---CCeEE
Q 005277 422 GPVYSASFSPLGDFILSSS-------ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ---GHYFASSSH---DRTAR 488 (704)
Q Consensus 422 ~~V~~l~~sp~~~~l~s~s-------~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~---~~~l~sgs~---dg~i~ 488 (704)
..|..-..+++.++++..+ -.|.+.+|+.+ .+..+.+.+|.+....+.+..+ ...|+.+.. .+.++
T Consensus 152 ~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e-r~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLh 230 (365)
T 2xzh_A 152 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD-RKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLH 230 (365)
T ss_dssp CEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT-TTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEE
T ss_pred ceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeec-ccccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEE
Confidence 4677778888888876432 23778999998 4556667788655544333211 123444432 26899
Q ss_pred EEECCCC---c------eeEEeccC---CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEe
Q 005277 489 IWSMDRI---Q------PLRIMAGH---LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMS 556 (704)
Q Consensus 489 lwd~~~~---~------~~~~~~~~---~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~s 556 (704)
+.++... . .+..+... .+--.++..++....+..-+.-|.|++||+.+|.++..-+-....|..-+-+
T Consensus 231 IiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~ 310 (365)
T 2xzh_A 231 IIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPH 310 (365)
T ss_dssp EEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE
T ss_pred EEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEeccc
Confidence 9988543 1 11122211 2334567778888889999999999999999999998877677777666665
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCeee
Q 005277 557 PDGRYMASGDEDGTIMMWDLASGRCV 582 (704)
Q Consensus 557 pdg~~l~sg~~dg~I~iwdl~~~~~~ 582 (704)
....-+++....|.|.--.+...+.+
T Consensus 311 ~~~~Gi~~Vnr~GqVl~v~v~~~~iv 336 (365)
T 2xzh_A 311 EATAGIIGVNRKGQVLSVCVEEENII 336 (365)
T ss_dssp GGGTEEEEEETTCEEEEEEECTTTHH
T ss_pred CCCCcEEEEcCCCEEEEEEECcccEe
Confidence 55445555567777777666655443
No 342
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=95.20 E-value=7.7 Score=46.75 Aligned_cols=150 Identities=10% Similarity=0.043 Sum_probs=87.1
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE-eecCCcCeeEEEEcCC------CCEEEEEeC-CCeEEEEECC
Q 005277 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVC-YKGHNYPVWDVQFNPQ------GHYFASSSH-DRTARIWSMD 493 (704)
Q Consensus 422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~-~~~h~~~V~~v~~sp~------~~~l~sgs~-dg~i~lwd~~ 493 (704)
..|...+.+ +.+++.++ ++.+.++.++.++.... -..-...|.|+++.|. +.++++|.+ |++++|+++.
T Consensus 514 ~~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~ 590 (1158)
T 3ei3_A 514 KNISVASCN--SSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLP 590 (1158)
T ss_dssp CCCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETT
T ss_pred CEEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECC
Confidence 356666655 34566665 57888888776532211 1123567999999863 478999997 9999999999
Q ss_pred CCceeEEecc-CCCCeeEEEEc--CCCCEEEEEECCCcEEEEeC--CCCcEEE---EeecCCCCEEEEEEecCCCEEEEE
Q 005277 494 RIQPLRIMAG-HLSDVDCVRWH--INCNYIATGSSDKTVRLWDV--SSGECVR---IFIGHRSMILSLAMSPDGRYMASG 565 (704)
Q Consensus 494 ~~~~~~~~~~-~~~~V~~v~~~--p~~~~l~tgs~dg~I~iwd~--~~~~~~~---~~~~h~~~i~~l~~spdg~~l~sg 565 (704)
..+.+....- ......++.+. ....+|.+|-.||.+.-+.+ .+|.... .+.| ..++.=..+...|..-+.+
T Consensus 591 ~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a 669 (1158)
T 3ei3_A 591 SFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFA 669 (1158)
T ss_dssp TCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEE
T ss_pred CCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEE
Confidence 8766644332 11233444332 24468899999998765544 4554432 2223 2344444444444433333
Q ss_pred eCCCeEEEEe
Q 005277 566 DEDGTIMMWD 575 (704)
Q Consensus 566 ~~dg~I~iwd 575 (704)
..+.-..++-
T Consensus 670 ~s~rp~liy~ 679 (1158)
T 3ei3_A 670 CSDRPTVIYS 679 (1158)
T ss_dssp ESSSCEEEEE
T ss_pred ECCCCEEEEE
Confidence 3344444443
No 343
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.15 E-value=0.27 Score=50.57 Aligned_cols=141 Identities=13% Similarity=0.037 Sum_probs=79.4
Q ss_pred eCCCeEEEEeCCCCceeEEeec----CCcCeeE---EEE-----cCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCC-
Q 005277 440 SADTTIRLWSTKLNANLVCYKG----HNYPVWD---VQF-----NPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS- 506 (704)
Q Consensus 440 s~Dg~I~lwd~~~~~~~~~~~~----h~~~V~~---v~~-----sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~~~~- 506 (704)
+.||.|..++..+|.....+.. ...|+.. ... ...+..+++|+.+|.+...|+.+++.+..+.....
T Consensus 64 ~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~ 143 (339)
T 2be1_A 64 FGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKN 143 (339)
T ss_dssp STTTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBC
T ss_pred CCCCEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCc
Confidence 5788898888887754443321 1222221 000 01456788999999999999999999988863311
Q ss_pred ------CeeEEEEc-----CCCCEEEEEECCCcEEEEeCCCCcEEEEe-----ecCCCC--E-EEEEEecCCCEEEEEeC
Q 005277 507 ------DVDCVRWH-----INCNYIATGSSDKTVRLWDVSSGECVRIF-----IGHRSM--I-LSLAMSPDGRYMASGDE 567 (704)
Q Consensus 507 ------~V~~v~~~-----p~~~~l~tgs~dg~I~iwd~~~~~~~~~~-----~~h~~~--i-~~l~~spdg~~l~sg~~ 567 (704)
...|.... ..+..|+.|..+..+.+.+ ++|+ +..+ ...... + .+-..+.|+.+ +.++.
T Consensus 144 ~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~ 220 (339)
T 2be1_A 144 GYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFR 220 (339)
T ss_dssp C--------------------CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEET
T ss_pred ccccccccccccccccccccCCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECC
Confidence 01122111 1235677777777777776 4553 2211 111000 0 00001124666 45788
Q ss_pred CCeEEEEeCCCCeeee
Q 005277 568 DGTIMMWDLASGRCVT 583 (704)
Q Consensus 568 dg~I~iwdl~~~~~~~ 583 (704)
||.|.-+|..+|..+-
T Consensus 221 dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 221 DKSLLASDLDFRIARW 236 (339)
T ss_dssp TTEEEEECSTTCCEEE
T ss_pred CCEEEEEECCCCcEEE
Confidence 9999999999888765
No 344
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.03 E-value=0.71 Score=47.54 Aligned_cols=26 Identities=23% Similarity=0.229 Sum_probs=16.1
Q ss_pred CCCCEEEEEeCCC------cEEEEeCCCCccc
Q 005277 633 CEGSLLASGSADC------TVKLWDVTTSTKV 658 (704)
Q Consensus 633 ~~g~~lasgs~Dg------~V~iWd~~~~~~~ 658 (704)
.++.+++.||.++ .|.++++++++..
T Consensus 315 ~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~ 346 (357)
T 2uvk_A 315 WNNSLLIIGGETAGGKAVTDSVLITVKDNKVT 346 (357)
T ss_dssp ETTEEEEEEEECGGGCEEEEEEEEEC-CCSCE
T ss_pred eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeE
Confidence 3567888888653 3556688776543
No 345
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.01 E-value=6.6 Score=44.97 Aligned_cols=190 Identities=10% Similarity=0.088 Sum_probs=111.7
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcC
Q 005277 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (704)
Q Consensus 352 ~~V~~~~fs~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 431 (704)
..|.|+....+| .|.+|+.+| +..||..+..-.. ........|.++.. .
T Consensus 63 ~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~----------------------------~~~~~~~~i~~i~~-~ 111 (758)
T 3ott_A 63 TRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQ----------------------------PETDFPTDVRTMAL-Q 111 (758)
T ss_dssp SCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECC----------------------------CSCCCCSCEEEEEE-E
T ss_pred ceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEEC----------------------------cccCCCceEEEEEe-c
Confidence 458888777666 566677666 6788865411000 00001224666654 3
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEee-----cCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc---
Q 005277 432 LGDFILSSSADTTIRLWSTKLNANLVCYK-----GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG--- 503 (704)
Q Consensus 432 ~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~-----~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~~--- 503 (704)
++ .|..++.+ -+..++..+++.. .+. .....|.++....+|.+. .|+.+ -+..++..+.+.......
T Consensus 112 ~g-~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~~~~~~~~~~~~~~~~~~ 186 (758)
T 3ott_A 112 GD-TLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRTKDNQIY-VGTYN-GLCRYIPSNGKFEGIPLPVHS 186 (758)
T ss_dssp TT-EEEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCEEEEEECTTCCEE-EEETT-EEEEEETTTTEEEEECCCCCT
T ss_pred CC-cEEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEcCCCCEE-EEeCC-CHhhCccCCCceEEecCCCcc
Confidence 44 46666666 5788888765432 331 123468888888777654 45554 477788766543222111
Q ss_pred --CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCCCe
Q 005277 504 --HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR 580 (704)
Q Consensus 504 --~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~ 580 (704)
....|.++...+++..|..|+. +-+..+|..+++...........|.++....+|.+.+ |+.+ -+.+++..+++
T Consensus 187 ~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~ 262 (758)
T 3ott_A 187 SQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTP 262 (758)
T ss_dssp TCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EETT-EEEEECCTTSC
T ss_pred ccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCc
Confidence 1224788887777776666764 4688899877654332212234588888887887554 4444 47888876654
No 346
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.96 E-value=0.78 Score=55.38 Aligned_cols=240 Identities=11% Similarity=0.141 Sum_probs=129.9
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCC-CceeEEeccC---
Q 005277 429 FSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR-IQPLRIMAGH--- 504 (704)
Q Consensus 429 ~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~-~~~~~~~~~~--- 504 (704)
.+|..+.++.=. ..++.|+|+++...+..+.- ..+|.--.|-... .++..+ +..|.-|++.. ..|+..|..|
T Consensus 73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L 148 (1630)
T 1xi4_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSL 148 (1630)
T ss_pred cCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcchhc
Confidence 456666555443 57899999998888877664 3456556665443 333332 46899999974 4566666655
Q ss_pred -CCCeeEEEEcCCCCEEEEEE-------CCCcEEEEeCCCCcEEEEeecCCCCEEEEEEec--CCCEEEE-Ee---CCCe
Q 005277 505 -LSDVDCVRWHINCNYIATGS-------SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP--DGRYMAS-GD---EDGT 570 (704)
Q Consensus 505 -~~~V~~v~~~p~~~~l~tgs-------~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~sp--dg~~l~s-g~---~dg~ 570 (704)
...|..-..+++.++++..+ ..|.+.+|.+..+. .+.+.||.+.-..+.... ....|++ +. ..+.
T Consensus 149 ~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~k 227 (1630)
T 1xi4_A 149 AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGK 227 (1630)
T ss_pred ccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCce
Confidence 45677777788888887543 45788999886543 233556655443333321 1112222 21 1268
Q ss_pred EEEEeCCCC-eeeeeecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEEEEeCCCcEEE
Q 005277 571 IMMWDLASG-RCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKL 649 (704)
Q Consensus 571 I~iwdl~~~-~~~~~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lasgs~Dg~V~i 649 (704)
++|-++... ..-.. .......+.|.+ .....+. ...-+|+.-.++...+.-|.|++
T Consensus 228 Lhi~Ei~~~~~~~~~---f~kk~~~~~~~~-------------~~~~Dfp-------v~~~vs~k~g~iy~itk~G~~~~ 284 (1630)
T 1xi4_A 228 LHIIEVGTPPTGNQP---FPKKAVDVFFPP-------------EAQNDFP-------VAMQISEKHDVVFLITKYGYIHL 284 (1630)
T ss_pred EEEEecCCCccCCCC---CccccccccCCc-------------ccccCcc-------eEEEeccccCEEEEEecCceEEE
Confidence 888887542 11011 111111111100 0000000 01111666778888889999999
Q ss_pred EeCCCCccccccccccCccccccccccCCCCcCeEEEEEccCCcEEEEeecC
Q 005277 650 WDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS 701 (704)
Q Consensus 650 Wd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~V~~l~fs~~g~~La~gs~d 701 (704)
+|+.++..+....-... . --+.......+.|. ..++.|++|.++-.+
T Consensus 285 ~d~~t~~~i~~~ris~~--~-iF~~~~~~~~~g~~--~vnr~G~vl~v~v~~ 331 (1630)
T 1xi4_A 285 YDLETGTCIYMNRISGE--T-IFVTAPHEATAGII--GVNRKGQVLSVCVEE 331 (1630)
T ss_pred EecccchhhhhccccCC--c-eEEeccCCCCCceE--EEcCCceEEEEEEcc
Confidence 99999887644321111 0 01111222233443 345777777665443
No 347
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.46 E-value=2.3 Score=48.38 Aligned_cols=150 Identities=8% Similarity=0.065 Sum_probs=81.2
Q ss_pred CCCEEEEEeCC------CeEEEEeCCCCceeE--EeecCCcCeeEEEEcCCCCEEEEEeCCC--eEEEEECCCCceeEEe
Q 005277 432 LGDFILSSSAD------TTIRLWSTKLNANLV--CYKGHNYPVWDVQFNPQGHYFASSSHDR--TARIWSMDRIQPLRIM 501 (704)
Q Consensus 432 ~~~~l~s~s~D------g~I~lwd~~~~~~~~--~~~~h~~~V~~v~~sp~~~~l~sgs~dg--~i~lwd~~~~~~~~~~ 501 (704)
++..++.|+.+ ..+.+||..+.+-.. .+..... -.+++...++..++.|+.++ .+.+||..+..-...-
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~-~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~ 529 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRF-RHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVT 529 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCB-SCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcc-cceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEcc
Confidence 56666676643 347888887643221 1111111 12233324788888887654 6899998876433221
Q ss_pred c-----cCCCCeeEEEEcCC-CCEEEEEEC--C-----CcEEEEeCCCCcE-----EEEeec---CCCCEEEEEEecCCC
Q 005277 502 A-----GHLSDVDCVRWHIN-CNYIATGSS--D-----KTVRLWDVSSGEC-----VRIFIG---HRSMILSLAMSPDGR 560 (704)
Q Consensus 502 ~-----~~~~~V~~v~~~p~-~~~l~tgs~--d-----g~I~iwd~~~~~~-----~~~~~~---h~~~i~~l~~spdg~ 560 (704)
. .......++.+..+ +.+++.|+. + ..+.+||+.+... ...... ....-.+++...+++
T Consensus 530 ~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~ 609 (695)
T 2zwa_A 530 PKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRK 609 (695)
T ss_dssp CSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTE
T ss_pred CCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCE
Confidence 1 11122233555555 667777765 2 4588999988761 111111 111112333333477
Q ss_pred EEEEEeCC--------CeEEEEeCCCCeee
Q 005277 561 YMASGDED--------GTIMMWDLASGRCV 582 (704)
Q Consensus 561 ~l~sg~~d--------g~I~iwdl~~~~~~ 582 (704)
.++.||.+ ..|.+||+.+.+..
T Consensus 610 iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 610 LLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp EEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred EEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 77777743 45888888876543
No 348
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=94.39 E-value=3.2 Score=45.11 Aligned_cols=71 Identities=11% Similarity=0.111 Sum_probs=52.1
Q ss_pred CeeEEEEcCCCCEEEEEE-CCCcEEEEeCCC------CcE-------EEEeecCCCCEEEEEEecCCCEEEEEeCCCeEE
Q 005277 507 DVDCVRWHINCNYIATGS-SDKTVRLWDVSS------GEC-------VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM 572 (704)
Q Consensus 507 ~V~~v~~~p~~~~l~tgs-~dg~I~iwd~~~------~~~-------~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~ 572 (704)
....+..+|+|+++++++ -+.+|.++|++. ++. +.... -.-.....+|.++|....+..-|..|.
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqvv 402 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQVV 402 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceEE
Confidence 345688899999998866 578899999873 111 22222 234567899999996666777999999
Q ss_pred EEeCCC
Q 005277 573 MWDLAS 578 (704)
Q Consensus 573 iwdl~~ 578 (704)
-|++..
T Consensus 403 kWni~~ 408 (638)
T 3sbq_A 403 KWNMEE 408 (638)
T ss_dssp EEEHHH
T ss_pred EEeccH
Confidence 999864
No 349
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.25 E-value=1.2 Score=50.91 Aligned_cols=150 Identities=9% Similarity=0.046 Sum_probs=80.6
Q ss_pred CCCCEEEEEeCC----CeEEEEeCCCCceeEEe-e------cCCcCeeEEEEcC-CCCEEEEEeCC------CeEEEEEC
Q 005277 431 PLGDFILSSSAD----TTIRLWSTKLNANLVCY-K------GHNYPVWDVQFNP-QGHYFASSSHD------RTARIWSM 492 (704)
Q Consensus 431 p~~~~l~s~s~D----g~I~lwd~~~~~~~~~~-~------~h~~~V~~v~~sp-~~~~l~sgs~d------g~i~lwd~ 492 (704)
.++..++.|+.+ ..+.+||..+++-...- . .....-.+++..+ ++..++.||.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 346666666643 45788888765433222 1 1111112333333 67788888744 35778888
Q ss_pred CCCceeEEeccCCCC-eeEEEEcCCCCEEEEEECCC--cEEEEeCCCCcEEEEee-----cCCCCEEEEEEecC-CCEEE
Q 005277 493 DRIQPLRIMAGHLSD-VDCVRWHINCNYIATGSSDK--TVRLWDVSSGECVRIFI-----GHRSMILSLAMSPD-GRYMA 563 (704)
Q Consensus 493 ~~~~~~~~~~~~~~~-V~~v~~~p~~~~l~tgs~dg--~I~iwd~~~~~~~~~~~-----~h~~~i~~l~~spd-g~~l~ 563 (704)
.+.+-...-...... -.+++...++.+++.|+.++ .+.+||..++.-...-. .......++.+..+ ++.++
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence 775332221111111 11223324778888887654 79999998775433211 11122233555555 66777
Q ss_pred EEeC--C-----CeEEEEeCCCCe
Q 005277 564 SGDE--D-----GTIMMWDLASGR 580 (704)
Q Consensus 564 sg~~--d-----g~I~iwdl~~~~ 580 (704)
.||. + +.+.+||+.+..
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTC
T ss_pred ECCcCCCCCeeeCcEEEEEccCCc
Confidence 7765 2 358888887765
No 350
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=94.08 E-value=3.8 Score=40.75 Aligned_cols=144 Identities=12% Similarity=0.034 Sum_probs=76.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec
Q 005277 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA 502 (704)
Q Consensus 423 ~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~ 502 (704)
.|..++...... ++. . ||.|..|-......+-.-..-...|..|+.... +.+.-. ||.|..|-......+....
T Consensus 64 ~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~ 137 (282)
T 3qhy_B 64 GVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPA 137 (282)
T ss_dssp CCCEEEECSSEE-EEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred CEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCc
Confidence 566676654333 333 4 899999976644332211111346777776533 333334 8999999775532221112
Q ss_pred cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 005277 503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578 (704)
Q Consensus 503 ~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~ 578 (704)
.....|..++.-.+. .+.-. ||.|+.|-......+..-..-...|..++...+ +.++- .||.|..|=...
T Consensus 138 ~~~~~i~~i~~G~~~--~~~l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~--hs~al-~~G~v~~wG~n~ 207 (282)
T 3qhy_B 138 EAQSGVTALDGGVYT--ALAVK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIF--HSLAL-KDGKVIAWGDNR 207 (282)
T ss_dssp GGGSSEEEEEECSSE--EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEE-ETTEEEEEECCT
T ss_pred cCCCCeEEEEcccCE--EEEEE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCC--EEEEE-ECCeEEEEECCC
Confidence 233456666654332 22233 799999976532111111111245777766433 22333 589999997543
No 351
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.07 E-value=5.5 Score=39.99 Aligned_cols=138 Identities=8% Similarity=0.034 Sum_probs=82.9
Q ss_pred EEcCCCCEEEEEe----CCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeC-CCeEEEEECCCCceeEEec
Q 005277 428 SFSPLGDFILSSS----ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DRTARIWSMDRIQPLRIMA 502 (704)
Q Consensus 428 ~~sp~~~~l~s~s----~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~-dg~i~lwd~~~~~~~~~~~ 502 (704)
.|++++++|+-+. .+..|...+++. .....+..+.. ..|+|+++.|+-.+. ...|..-+++.....+.+.
T Consensus 110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG-s~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~ 184 (302)
T 3s25_A 110 YASLIGNYIYYLHYDTQTATSLYRIRIDG-EEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD 184 (302)
T ss_dssp EEEEETTEEEEEEESSSSCEEEEEEETTS-CCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC
T ss_pred EEEEeCCEEEEEeecCCCCceEEEEECCC-CCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC
Confidence 6777888888554 344566666663 33444444432 345667777765554 6788888888766555544
Q ss_pred cCCCCeeEEEEcCCCCEEEEEECC--CcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEe--CCCeEEEEeCCC
Q 005277 503 GHLSDVDCVRWHINCNYIATGSSD--KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD--EDGTIMMWDLAS 578 (704)
Q Consensus 503 ~~~~~V~~v~~~p~~~~l~tgs~d--g~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~--~dg~I~iwdl~~ 578 (704)
+ ... ..++|++.+|+-.... ..|..-++..+. ...+.. ..+ ..|+|+|.+|+.+. ..+.|..-++..
T Consensus 185 ~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG 255 (302)
T 3s25_A 185 C---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTE--ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDG 255 (302)
T ss_dssp S---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECSC--SCE--EEEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred C---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeC--CCc--ceEEECCCEEEEEECCCCcEEEEEECCC
Confidence 2 222 3456999888876644 356666765544 333432 233 34888898887653 235666666654
Q ss_pred C
Q 005277 579 G 579 (704)
Q Consensus 579 ~ 579 (704)
.
T Consensus 256 ~ 256 (302)
T 3s25_A 256 T 256 (302)
T ss_dssp C
T ss_pred C
Confidence 3
No 352
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=92.82 E-value=5.6 Score=43.18 Aligned_cols=206 Identities=11% Similarity=0.121 Sum_probs=108.2
Q ss_pred EEEEeCCCcEEEEEcccCCccccccccCCCCCCC--Cc---ccccCCCCCccceeeccCCccCeEEEEEc---CCCCEEE
Q 005277 366 VAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTT--PR---EDIIGPNGRKRSYTLYQGHSGPVYSASFS---PLGDFIL 437 (704)
Q Consensus 366 lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~h~~~V~~l~~s---p~~~~l~ 437 (704)
+.+|+..|.|+|+-+.++................ -. ..+... ...+..-..|. ..+++. -||+||+
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~---~~~~~~gD~HH---p~~S~tdg~yDGrylf 146 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGD---SAKFLNGDCHH---PHISMTDGKYDGKYLF 146 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGG---GGGCCCCCCCC---CEEEEETTEEEEEEEE
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhc---CCCccCCCcCC---CcccccCCeeeeEEEE
Confidence 6788889999999988765544333222111100 00 000000 00011111121 123332 2567777
Q ss_pred EEe-CCCeEEEEeCCCCceeEEee-cCCcCeeEEEEc--CCCCEEEEEeC-------CCeE---------EE---EECCC
Q 005277 438 SSS-ADTTIRLWSTKLNANLVCYK-GHNYPVWDVQFN--PQGHYFASSSH-------DRTA---------RI---WSMDR 494 (704)
Q Consensus 438 s~s-~Dg~I~lwd~~~~~~~~~~~-~h~~~V~~v~~s--p~~~~l~sgs~-------dg~i---------~l---wd~~~ 494 (704)
.-. .+..|-..+++..++-..+. .....+.++.|- |+-.|++.++. ||.. .+ .|.++
T Consensus 147 iNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~t 226 (638)
T 3sbq_A 147 INDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAET 226 (638)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTT
T ss_pred EecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCc
Confidence 665 56778888999888766554 245668888886 67778887763 3321 11 12222
Q ss_pred CceeEEeccCCCCeeEEEEcCCCCEEEEEECCC---------------cEEEEe-------------------------C
Q 005277 495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDK---------------TVRLWD-------------------------V 534 (704)
Q Consensus 495 ~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg---------------~I~iwd-------------------------~ 534 (704)
.+....+.- .+....+...+++.+.++.+.+. .|.+++ .
T Consensus 227 m~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~ 305 (638)
T 3sbq_A 227 MEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDG 305 (638)
T ss_dssp CSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEEC
T ss_pred cEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcc
Confidence 222211111 12344455567788877766331 234444 3
Q ss_pred CC----CcEEEEeecCCCCEEEEEEecCCCEEEEEe-CCCeEEEEeCCC
Q 005277 535 SS----GECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLAS 578 (704)
Q Consensus 535 ~~----~~~~~~~~~h~~~i~~l~~spdg~~l~sg~-~dg~I~iwdl~~ 578 (704)
+. +..+..+..-......+.++|||+++++++ .+.++.++|+..
T Consensus 306 ~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k 354 (638)
T 3sbq_A 306 RKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDK 354 (638)
T ss_dssp SCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred ccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeeh
Confidence 32 111111112223456788999999988765 678999999874
No 353
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=90.64 E-value=0.27 Score=38.99 Aligned_cols=30 Identities=23% Similarity=0.427 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Q 005277 3 ELQVVEFVATYLKKKGFSEAENALQAEIQR 32 (704)
Q Consensus 3 ~~~~~~~v~~yl~~~~~~~~~~~~~~e~~~ 32 (704)
.++|+++|++||...||..+-++||.|+..
T Consensus 10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~ 39 (88)
T 1uuj_A 10 RDELNRAIADYLRSNGYEEAYSVFKKEAEL 39 (88)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhcC
Confidence 368999999999999999999999999653
No 354
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=88.56 E-value=20 Score=35.33 Aligned_cols=144 Identities=15% Similarity=0.065 Sum_probs=76.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec
Q 005277 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA 502 (704)
Q Consensus 423 ~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~~~~~ 502 (704)
.|..++..... .++. . ||.|..|-......+..-......|..|+..... .++. . ||.+..|-......+..-.
T Consensus 25 ~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 25 GVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp SCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence 46666665332 2333 4 8999999766443322111123367777765333 3333 4 8999999876432221111
Q ss_pred cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCEEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 005277 503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578 (704)
Q Consensus 503 ~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~~ 578 (704)
.-...|..|+...+ ..+.-. +|.|+.|-....-.+..-......|..++...+ +.+.-. ||.|..|-...
T Consensus 99 ~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~ 168 (282)
T 3qhy_B 99 EARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY--TALAVK-NGGVIAWGDNY 168 (282)
T ss_dssp GGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEEE-TTEEEEEECCT
T ss_pred ccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC--EEEEEE-CCEEEEecCCC
Confidence 12346777766544 333344 999999976532111111112345666665432 333334 78899987553
No 355
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=87.63 E-value=32 Score=36.64 Aligned_cols=30 Identities=20% Similarity=-0.037 Sum_probs=22.6
Q ss_pred CCEEEEEEcCCCC-EEEEEeCCCcEEEEEcc
Q 005277 352 NGLNCASISQDGS-LVAGGFSDSSLKVWDMA 381 (704)
Q Consensus 352 ~~V~~~~fs~dg~-~lasg~~dg~I~iwdl~ 381 (704)
..-..|+|.|||+ .|+++...|.|++++..
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 4567899999996 45556688999998643
No 356
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=82.08 E-value=1.6 Score=34.74 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=32.4
Q ss_pred CchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCC
Q 005277 1 MDELQVVEFVATYLKKKGFSEAENALQAEIQRNKSS 36 (704)
Q Consensus 1 ~~~~~~~~~v~~yl~~~~~~~~~~~~~~e~~~~~~~ 36 (704)
++.+++|.+|-.||+.-||..|--+|..|+...+..
T Consensus 3 itsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~~~ 38 (90)
T 2xtc_A 3 ITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSN 38 (90)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGGSC
T ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCccc
Confidence 367899999999999999999999999999887654
No 357
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=79.33 E-value=58 Score=38.22 Aligned_cols=38 Identities=18% Similarity=0.321 Sum_probs=33.4
Q ss_pred CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEe
Q 005277 506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF 543 (704)
Q Consensus 506 ~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~ 543 (704)
..+.+++..++..++++-+.|+++|+|++.+++++.+.
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 35677788888999999999999999999999998875
No 358
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=73.52 E-value=45 Score=39.16 Aligned_cols=39 Identities=13% Similarity=0.141 Sum_probs=34.0
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee
Q 005277 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK 460 (704)
Q Consensus 422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~ 460 (704)
..+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 457788888888999999999999999999999887654
No 359
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=73.05 E-value=1e+02 Score=32.74 Aligned_cols=103 Identities=10% Similarity=0.084 Sum_probs=59.1
Q ss_pred CeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCc---eeEEee-----c----CCcCeeEEEEcCC----CCEEEEEeC--
Q 005277 423 PVYSASFSPLGD-FILSSSADTTIRLWSTKLNA---NLVCYK-----G----HNYPVWDVQFNPQ----GHYFASSSH-- 483 (704)
Q Consensus 423 ~V~~l~~sp~~~-~l~s~s~Dg~I~lwd~~~~~---~~~~~~-----~----h~~~V~~v~~sp~----~~~l~sgs~-- 483 (704)
.-..|+|.|++. .|+.+...|.|++++..... .+..+. + .......|+|+|+ +.++++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 457899999996 56666788999999754321 122211 1 1346788999996 444443332
Q ss_pred C----------CeEEEEECCCC----------ceeEEec--cCCCCeeEEEEcCCCCEEEEEEC
Q 005277 484 D----------RTARIWSMDRI----------QPLRIMA--GHLSDVDCVRWHINCNYIATGSS 525 (704)
Q Consensus 484 d----------g~i~lwd~~~~----------~~~~~~~--~~~~~V~~v~~~p~~~~l~tgs~ 525 (704)
+ ..|.-|.+... +.+..+. ........|.|.|+|.+.++.+.
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence 1 13444555321 1222221 11223578999999977776554
No 360
>1iap_A Guanine nucleotide exchange factor P115rhogef; RGS, RGRGS, signaling protein; 1.90A {Homo sapiens} SCOP: a.91.1.1
Probab=70.68 E-value=4.2 Score=37.54 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhHH
Q 005277 94 YPVFIHCFMDLVAKGHIQEARTFFNNFREDHE 125 (704)
Q Consensus 94 ~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~ 125 (704)
-|+|+|+|-||.+.+.+.++|.|+-.|..-|.
T Consensus 32 spLLfYL~tdlYk~~~~Ke~rk~~~Ei~stFL 63 (211)
T 1iap_A 32 GPLLCCLHADMLGSLGPKEAKKAFLDFYHSFL 63 (211)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHhccChHHHHHHHHHHHHHHh
Confidence 49999999999999999999999999988884
No 361
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=65.77 E-value=1.2e+02 Score=30.87 Aligned_cols=137 Identities=9% Similarity=0.004 Sum_probs=67.8
Q ss_pred CEEEEEeCCCeEEEEeCCC-CceeEEe--ecCCcCeeEEEEcC--CCCEEEEEeCCC----eEEEEECCCCceeEEecc-
Q 005277 434 DFILSSSADTTIRLWSTKL-NANLVCY--KGHNYPVWDVQFNP--QGHYFASSSHDR----TARIWSMDRIQPLRIMAG- 503 (704)
Q Consensus 434 ~~l~s~s~Dg~I~lwd~~~-~~~~~~~--~~h~~~V~~v~~sp--~~~~l~sgs~dg----~i~lwd~~~~~~~~~~~~- 503 (704)
..|+.|+..| +.+++... +..-..+ ......|.+|++.| .+..+ +++..| .|... .+.+..-..+..
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~-~g~~~g~~g~gl~~s-~D~G~tW~~~~~~ 99 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERML-MAARTGHLGPTVFRS-DDGGGNWTEATRP 99 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEE-EEEEC--CCEEEEEE-SSTTSCCEECSBC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEE-EEecCCCCCccEEEe-CCCCCCceECCcc
Confidence 3577777777 44444332 2222211 12345699999998 45444 444444 33332 233332222211
Q ss_pred -------------CCCCeeEEEEcC-C-CCEEEEEECCCcEEEEeCCCCcEEEEeec-------------------CCCC
Q 005277 504 -------------HLSDVDCVRWHI-N-CNYIATGSSDKTVRLWDVSSGECVRIFIG-------------------HRSM 549 (704)
Q Consensus 504 -------------~~~~V~~v~~~p-~-~~~l~tgs~dg~I~iwd~~~~~~~~~~~~-------------------h~~~ 549 (704)
....|.++++.| + ...|.+++..+.|...+ ..|+.-..+.. ....
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~ 178 (394)
T 3b7f_A 100 PAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPK 178 (394)
T ss_dssp CCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCE
T ss_pred ccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCc
Confidence 112477888887 2 45666666566555443 22332222211 1235
Q ss_pred EEEEEEecC-CCEEEEEeCCCeEEEE
Q 005277 550 ILSLAMSPD-GRYMASGDEDGTIMMW 574 (704)
Q Consensus 550 i~~l~~spd-g~~l~sg~~dg~I~iw 574 (704)
+.+|.++|. ...|+.+..++.|...
T Consensus 179 i~~i~~d~~~~~~l~vg~~~ggl~~s 204 (394)
T 3b7f_A 179 MHSILVDPRDPKHLYIGMSSGGVFES 204 (394)
T ss_dssp EEEEEECTTCTTCEEEEEETBEEEEE
T ss_pred eeEEEECCCCCCEEEEEECCCCEEEE
Confidence 789999883 3445555544444443
No 362
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=61.77 E-value=1.3e+02 Score=29.85 Aligned_cols=145 Identities=6% Similarity=0.062 Sum_probs=84.9
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCcee---------EEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCcee---
Q 005277 431 PLGDFILSSSADTTIRLWSTKLNANL---------VCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL--- 498 (704)
Q Consensus 431 p~~~~l~s~s~Dg~I~lwd~~~~~~~---------~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~~~~~--- 498 (704)
++..++++.+.+|.|+--.+...... ..++... .+..+........++..+..|.++-+........
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D-~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGD-EIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTC-CEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCC-EEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 45677889999999998876543221 1123333 3444444445566777788888777765321111
Q ss_pred ---------EEeccCCCCeeEEEEcC---CCCEEEEEECCCcEEEEeCCC-------CcEEEEeecCCCCEEEEEEecCC
Q 005277 499 ---------RIMAGHLSDVDCVRWHI---NCNYIATGSSDKTVRLWDVSS-------GECVRIFIGHRSMILSLAMSPDG 559 (704)
Q Consensus 499 ---------~~~~~~~~~V~~v~~~p---~~~~l~tgs~dg~I~iwd~~~-------~~~~~~~~~h~~~i~~l~~spdg 559 (704)
..+. ....|.++...+ +..+++..+..|.++...+.. |.....+.. .+.+..+.....+
T Consensus 85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~ 162 (312)
T 1suu_A 85 SKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKD 162 (312)
T ss_dssp ---CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTT
T ss_pred CCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCC
Confidence 0111 123344443332 467888889999999887742 222222222 4566666665556
Q ss_pred CEEEEEeCCCeEEEEeCCC
Q 005277 560 RYMASGDEDGTIMMWDLAS 578 (704)
Q Consensus 560 ~~l~sg~~dg~I~iwdl~~ 578 (704)
..++..+.+|.+..+....
T Consensus 163 ~~i~l~T~~G~~~r~~~~e 181 (312)
T 1suu_A 163 EKVICLSKKGSAFIFNSRD 181 (312)
T ss_dssp CEEEEEETTSEEEEEEGGG
T ss_pred CEEEEEeCCCcEEEEEHHH
Confidence 6788889999998888753
No 363
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=58.65 E-value=1.5e+02 Score=29.63 Aligned_cols=145 Identities=9% Similarity=0.082 Sum_probs=88.2
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCce-------eEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECC--CCce-----
Q 005277 432 LGDFILSSSADTTIRLWSTKLNAN-------LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD--RIQP----- 497 (704)
Q Consensus 432 ~~~~l~s~s~Dg~I~lwd~~~~~~-------~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~--~~~~----- 497 (704)
+..+++.++.+|.|+-..+..... ...++.. ..+..+........++..+..|.+..+... ....
T Consensus 108 ~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~-D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a 186 (327)
T 3uc1_A 108 DAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDN-DELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRAT 186 (327)
T ss_dssp SSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTS
T ss_pred CCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCC-CEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCC
Confidence 577999999999999988654221 2223333 344445444455678888889999888876 3211
Q ss_pred --eEEec-cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC-------CcEEEEee--cCCCCEEEEEEecCCCEEEEE
Q 005277 498 --LRIMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-------GECVRIFI--GHRSMILSLAMSPDGRYMASG 565 (704)
Q Consensus 498 --~~~~~-~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~-------~~~~~~~~--~h~~~i~~l~~spdg~~l~sg 565 (704)
+..+. .....|.++...+.+.+++..+..|.++.-.+.. ++-+..+. ...+.+..+....+...++..
T Consensus 187 ~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~ 266 (327)
T 3uc1_A 187 SGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAV 266 (327)
T ss_dssp BCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEE
T ss_pred CCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEE
Confidence 11111 1234566666656667899999999998877532 12232222 113445555444445566667
Q ss_pred eCCCeEEEEeCC
Q 005277 566 DEDGTIMMWDLA 577 (704)
Q Consensus 566 ~~dg~I~iwdl~ 577 (704)
+.+|.+.-++..
T Consensus 267 T~~G~~ir~~~~ 278 (327)
T 3uc1_A 267 TSGGGVIRTAAR 278 (327)
T ss_dssp EGGGCEEEEEGG
T ss_pred cCCCeEEEEehh
Confidence 777877777654
No 364
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=56.88 E-value=1.7e+02 Score=29.68 Aligned_cols=149 Identities=11% Similarity=-0.031 Sum_probs=74.5
Q ss_pred cCeEEEEEcC--CCCEEEEEeCCC----eEEEEeCCCCceeEEeec--------------CCcCeeEEEEcC-C-CCEEE
Q 005277 422 GPVYSASFSP--LGDFILSSSADT----TIRLWSTKLNANLVCYKG--------------HNYPVWDVQFNP-Q-GHYFA 479 (704)
Q Consensus 422 ~~V~~l~~sp--~~~~l~s~s~Dg----~I~lwd~~~~~~~~~~~~--------------h~~~V~~v~~sp-~-~~~l~ 479 (704)
..|.+|++.| .+. |..++..| .|... .+.+..-..+.. ....|.++++.| + ...++
T Consensus 55 ~~v~~i~~dp~~~~~-l~~g~~~g~~g~gl~~s-~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 55 HTIHHIVQDPREPER-MLMAARTGHLGPTVFRS-DDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp SEEEEEEECSSSTTC-EEEEEEC--CCEEEEEE-SSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CceEEEEECCCCCCe-EEEEecCCCCCccEEEe-CCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 4689999998 444 44444444 34332 232322222110 112577899987 2 45566
Q ss_pred EEeCCCeEEEEECCCCceeEEecc-------------------CCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCcE
Q 005277 480 SSSHDRTARIWSMDRIQPLRIMAG-------------------HLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGEC 539 (704)
Q Consensus 480 sgs~dg~i~lwd~~~~~~~~~~~~-------------------~~~~V~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~~ 539 (704)
.++..+.|...+ +.++.-..+.. ....+.+|.++|. .+.|+++..++.|...+ ..|+.
T Consensus 133 ~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~t 210 (394)
T 3b7f_A 133 AGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTD 210 (394)
T ss_dssp EEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTSS
T ss_pred EEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCC
Confidence 665556554442 22222222211 1235788999883 45555555455444432 22332
Q ss_pred EEEeecC-------------CCCEEEEEEecC-CCEEEEEeCCCeEEEEe
Q 005277 540 VRIFIGH-------------RSMILSLAMSPD-GRYMASGDEDGTIMMWD 575 (704)
Q Consensus 540 ~~~~~~h-------------~~~i~~l~~spd-g~~l~sg~~dg~I~iwd 575 (704)
-..+... ...+.++.+.|. ...|+++...| |...+
T Consensus 211 W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~ 259 (394)
T 3b7f_A 211 WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMD 259 (394)
T ss_dssp CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEE
T ss_pred ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeC
Confidence 2222110 124889999985 45666666554 44433
No 365
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=56.72 E-value=1.5e+02 Score=28.86 Aligned_cols=155 Identities=9% Similarity=0.058 Sum_probs=91.7
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCeEEEEe---CCCCceeEEeecCCcCeeEEEEcC-CCCEEEEEeCCCeEEEEECCCCc-
Q 005277 422 GPVYSASFSPLGDFILSSSADTTIRLWS---TKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQ- 496 (704)
Q Consensus 422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd---~~~~~~~~~~~~h~~~V~~v~~sp-~~~~l~sgs~dg~i~lwd~~~~~- 496 (704)
..+..+.-.....+|+.-+.+|.++--. +........+. ....|..+.... +..+++..+.+|.++-..+....
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~ 102 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEY 102 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTT
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhh
Confidence 4455555555556677777788776543 32221111132 344566654422 56789999999999999875532
Q ss_pred ---eeEEec-cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC-------CcEEEEee-cCCCCEEEEEEecCCCEEEE
Q 005277 497 ---PLRIMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-------GECVRIFI-GHRSMILSLAMSPDGRYMAS 564 (704)
Q Consensus 497 ---~~~~~~-~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~-------~~~~~~~~-~h~~~i~~l~~spdg~~l~s 564 (704)
-...+. ...+.+..+........++..+..|.+..+.... .+-+..+. .....|.++...+++..++.
T Consensus 103 ~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~ll~ 182 (276)
T 3no0_A 103 KAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYLLV 182 (276)
T ss_dssp CSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEEEE
T ss_pred hcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEEEE
Confidence 111111 1234455555555666888888999988886531 11122111 12356666666666778888
Q ss_pred EeCCCeEEEEeCC
Q 005277 565 GDEDGTIMMWDLA 577 (704)
Q Consensus 565 g~~dg~I~iwdl~ 577 (704)
.+..|.++...+.
T Consensus 183 ~T~~G~~kr~~~~ 195 (276)
T 3no0_A 183 ITAKGRVKKISHE 195 (276)
T ss_dssp EETTSCEEEEEGG
T ss_pred EeCCCcEEEeEHH
Confidence 8999998888764
No 366
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=56.29 E-value=2.5e+02 Score=31.46 Aligned_cols=135 Identities=9% Similarity=0.062 Sum_probs=71.6
Q ss_pred CeEEEEeCCCCc--eeEEeecCCcCe-eEEEEcCCCC-----EEEEEeCC---CeEEEEECCCC-ceeEEeccCCCCeeE
Q 005277 443 TTIRLWSTKLNA--NLVCYKGHNYPV-WDVQFNPQGH-----YFASSSHD---RTARIWSMDRI-QPLRIMAGHLSDVDC 510 (704)
Q Consensus 443 g~I~lwd~~~~~--~~~~~~~h~~~V-~~v~~sp~~~-----~l~sgs~d---g~i~lwd~~~~-~~~~~~~~~~~~V~~ 510 (704)
..|+.|.+.+.. -...|.+....+ .+...++++. .+++.+.+ ..+.+.+.+.. .....+.... . ..
T Consensus 216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-~~ 293 (711)
T 4hvt_A 216 NSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPS-D-AT 293 (711)
T ss_dssp CEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCT-T-CE
T ss_pred CEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCC-c-ce
Confidence 568899887653 344555444333 2344556665 24444422 44566665531 1222222111 1 12
Q ss_pred EEEcCCCCEEEEE----------ECCCcEEEEeCCCCc-------EEEE-eec-CCCCEEEEEEecCCCEEEEEeCCCe-
Q 005277 511 VRWHINCNYIATG----------SSDKTVRLWDVSSGE-------CVRI-FIG-HRSMILSLAMSPDGRYMASGDEDGT- 570 (704)
Q Consensus 511 v~~~p~~~~l~tg----------s~dg~I~iwd~~~~~-------~~~~-~~~-h~~~i~~l~~spdg~~l~sg~~dg~- 570 (704)
+..++.+.+++.. ...+.|...|+.++. ..+. +.. ....+..+.|..+ .++++...+|.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~~ 372 (711)
T 4hvt_A 294 LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNVVA 372 (711)
T ss_dssp EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETTEE
T ss_pred EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECCEE
Confidence 2344555555532 246789999987631 2222 322 2346778888865 56667777764
Q ss_pred -EEEEeCCCCe
Q 005277 571 -IMMWDLASGR 580 (704)
Q Consensus 571 -I~iwdl~~~~ 580 (704)
|.++|+.++.
T Consensus 373 ~l~~~~~~~g~ 383 (711)
T 4hvt_A 373 KVVTFTLENEQ 383 (711)
T ss_dssp EEEEECEETTE
T ss_pred EEEEEECCCCc
Confidence 6777776664
No 367
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=56.07 E-value=1.5e+02 Score=28.79 Aligned_cols=153 Identities=8% Similarity=0.086 Sum_probs=91.7
Q ss_pred cCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCc------eeEEeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 005277 422 GPVYSASFSP-LGDFILSSSADTTIRLWSTKLNA------NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR 494 (704)
Q Consensus 422 ~~V~~l~~sp-~~~~l~s~s~Dg~I~lwd~~~~~------~~~~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~~ 494 (704)
..|.++.... +..+++..+.+|.++-..+.... ....++. ...+..+........++..+..|.+..+....
T Consensus 68 e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~e 146 (276)
T 3no0_A 68 EKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVRE 146 (276)
T ss_dssp CCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGG
T ss_pred CEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhh
Confidence 4455553321 46789999999999998875432 1122332 23455555555566788888999988887643
Q ss_pred Cce-------eE--EeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC-------CCcEEEEeecCCCCEEEEEEecC
Q 005277 495 IQP-------LR--IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS-------SGECVRIFIGHRSMILSLAMSPD 558 (704)
Q Consensus 495 ~~~-------~~--~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~-------~~~~~~~~~~h~~~i~~l~~spd 558 (704)
... +. .+. ....|..+...+++.+++..+..|.+....+. .++-+..+ ...+.+..+....+
T Consensus 147 ip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~ 224 (276)
T 3no0_A 147 VPPSTPGARGVQGIKLE-KNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKE 224 (276)
T ss_dssp SCBCCTTCCCEECCCCC-TTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESS
T ss_pred CCCcCCCCCCEEEEccC-CCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCC
Confidence 111 11 122 22456555555566788899999999888763 22333333 23344555444334
Q ss_pred CCEEEEEeCCCeEEE--EeCC
Q 005277 559 GRYMASGDEDGTIMM--WDLA 577 (704)
Q Consensus 559 g~~l~sg~~dg~I~i--wdl~ 577 (704)
...++..+.+|.+.. ++..
T Consensus 225 ~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 225 EVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEEEEEEETTSCEEEEEEEGG
T ss_pred CCEEEEEcCCCeEEEeeeCHH
Confidence 456666777777777 7654
No 368
>3cx8_B RHO guanine nucleotide exchange factor 11; signal transduction, protein complex, GTP-binding, lipoprotein, membrane, nucleotide-binding; HET: GSP; 2.00A {Rattus norvegicus} PDB: 3cx6_B* 3cx7_B* 1htj_F
Probab=56.05 E-value=5.5 Score=36.71 Aligned_cols=32 Identities=6% Similarity=0.102 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhHH
Q 005277 94 YPVFIHCFMDLVAKGHIQEARTFFNNFREDHE 125 (704)
Q Consensus 94 ~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~ 125 (704)
-|+|+|+|.||.+.+.+.++|.|+-.+...|.
T Consensus 50 ~~LlfyL~~d~yk~~~~Ke~rk~a~ei~stFL 81 (203)
T 3cx8_B 50 GPLLFYLCSEVYQQTNPKDSRSLGKDIWNIFL 81 (203)
T ss_dssp HHHHHHHHHHHHHTSCTTTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhccChHHHHHHHHHHHHHHh
Confidence 38999999999999999999999999988884
No 369
>3ab3_B RHO guanine nucleotide exchange factor 1; signal transduction, protein complex, GTP-binding, membrane, transducer, lipoprotein, nucleotide-binding; HET: GDP; 2.40A {Homo sapiens} PDB: 1shz_C*
Probab=53.18 E-value=3.4 Score=38.92 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhHH
Q 005277 94 YPVFIHCFMDLVAKGHIQEARTFFNNFREDHE 125 (704)
Q Consensus 94 ~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~ 125 (704)
-|+|+|+|-||.+.+.+.++|.|+-.|..-|.
T Consensus 86 spLLfYL~tdlYk~~~~Ke~Rk~a~Ei~stFL 117 (246)
T 3ab3_B 86 GPLLCCLHADMLGSLGPKEAKKAFLDFYHSFL 117 (246)
T ss_dssp HHHHHHHHHHHHC-------CCTTHHHHHHTT
T ss_pred hhhHHHHHHHHHhccChHHHHHHHHHHHHHHc
Confidence 49999999999999999999999999888775
No 370
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=53.07 E-value=2.1e+02 Score=29.42 Aligned_cols=124 Identities=9% Similarity=0.063 Sum_probs=75.2
Q ss_pred cCeEEEEEcCCCCEEE--EEeC-------------CCeEEEEeCCCC--ceeEEeecC------CcCeeEEEEc---CC-
Q 005277 422 GPVYSASFSPLGDFIL--SSSA-------------DTTIRLWSTKLN--ANLVCYKGH------NYPVWDVQFN---PQ- 474 (704)
Q Consensus 422 ~~V~~l~~sp~~~~l~--s~s~-------------Dg~I~lwd~~~~--~~~~~~~~h------~~~V~~v~~s---p~- 474 (704)
-.|+.+...+++++-+ +|.. --.|.+||+.+. +.++.+.-. ...+.++.+. |.
T Consensus 87 vsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~ 166 (381)
T 3q6k_A 87 TSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKG 166 (381)
T ss_dssp SCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTT
T ss_pred EEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCC
Confidence 4688888888776433 3321 125889999999 888877532 3457778777 22
Q ss_pred ---CCEEEEE-eCCCeEEEEECCCCceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEeecCCCCE
Q 005277 475 ---GHYFASS-SHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMI 550 (704)
Q Consensus 475 ---~~~l~sg-s~dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~i 550 (704)
+.++..+ +..+.|.++|+.+++..+....+ |.|+....++ -+|. ... + ...|
T Consensus 167 ~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~--------~~pd~~~~~~--i~G~----------~~~-~---~~Gi 222 (381)
T 3q6k_A 167 DCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT--------FKAERPTKFD--YGGK----------EYE-F---KAGI 222 (381)
T ss_dssp TSCSEEEEEEETTTTEEEEEETTTTEEEEEECGG--------GSCCSCEEEE--ETTE----------EEE-E---CCCE
T ss_pred CCCccEEEEEcCCCCcEEEEECCCCcEEEEccCC--------CccccCcceE--ECCE----------EeE-e---ccCc
Confidence 3344444 35788999999998887766321 3444111111 1222 111 1 2468
Q ss_pred EEEEEecC----CCEEEEEeCCC
Q 005277 551 LSLAMSPD----GRYMASGDEDG 569 (704)
Q Consensus 551 ~~l~~spd----g~~l~sg~~dg 569 (704)
..|+.+|+ +++|+-....+
T Consensus 223 ~gIaLsp~~~~~~~~LYf~plss 245 (381)
T 3q6k_A 223 FGITLGDRDSEGNRPAYYLAGSA 245 (381)
T ss_dssp EEEEECCCCTTSCCEEEEEESSC
T ss_pred eEEEecCCcCCCCeEEEEEECCC
Confidence 99999998 67777665544
No 371
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=50.76 E-value=3.1e+02 Score=30.78 Aligned_cols=153 Identities=10% Similarity=0.003 Sum_probs=78.5
Q ss_pred eEEEE-EcCCCCEEEEE-eC----CCeEEEEeCCCCceeEE-eec-CCc------CeeEEEEcCCCCEEEEE--------
Q 005277 424 VYSAS-FSPLGDFILSS-SA----DTTIRLWSTKLNANLVC-YKG-HNY------PVWDVQFNPQGHYFASS-------- 481 (704)
Q Consensus 424 V~~l~-~sp~~~~l~s~-s~----Dg~I~lwd~~~~~~~~~-~~~-h~~------~V~~v~~sp~~~~l~sg-------- 481 (704)
...+. ++|++++++.+ |. -..++++|+.+++.+.. +.. -.. ....++|..++..+++.
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~ 210 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEIT 210 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBC
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcC
Confidence 44555 88999876633 33 24699999998876531 110 000 11345787444444432
Q ss_pred --eCCCeEEEEECCCCc--eeEEeccCCCCee-EEEEcCCCCE-----EEEEECC---CcEEEEeCCC--CcEEEEeecC
Q 005277 482 --SHDRTARIWSMDRIQ--PLRIMAGHLSDVD-CVRWHINCNY-----IATGSSD---KTVRLWDVSS--GECVRIFIGH 546 (704)
Q Consensus 482 --s~dg~i~lwd~~~~~--~~~~~~~~~~~V~-~v~~~p~~~~-----l~tgs~d---g~I~iwd~~~--~~~~~~~~~h 546 (704)
+....|+.|.+-+.. -..++.+....+. ....++++.+ +++.+.+ ..+++.|... +..+......
T Consensus 211 ~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 290 (711)
T 4hvt_A 211 SSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPS 290 (711)
T ss_dssp TTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCT
T ss_pred cCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCC
Confidence 123568888876642 3345554444442 3334456552 3433322 3456666543 4433332222
Q ss_pred CCCEEEEEEecCCCEEEEE----------eCCCeEEEEeCCCC
Q 005277 547 RSMILSLAMSPDGRYMASG----------DEDGTIMMWDLASG 579 (704)
Q Consensus 547 ~~~i~~l~~spdg~~l~sg----------~~dg~I~iwdl~~~ 579 (704)
.. .+..++++.+++.. ...+.|...|+.++
T Consensus 291 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 330 (711)
T 4hvt_A 291 DA---TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDL 330 (711)
T ss_dssp TC---EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGG
T ss_pred cc---eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcc
Confidence 21 12344566555532 24667888887653
No 372
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=46.90 E-value=48 Score=39.87 Aligned_cols=38 Identities=18% Similarity=0.289 Sum_probs=32.5
Q ss_pred CeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEee
Q 005277 507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI 544 (704)
Q Consensus 507 ~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~ 544 (704)
.+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 45566677888999999999999999999999988753
No 373
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=46.75 E-value=4.4e+02 Score=31.40 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=31.5
Q ss_pred CEEEEEEecCCCEEEEEeCCCeEEEEeCCCCeeeeee
Q 005277 549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL 585 (704)
Q Consensus 549 ~i~~l~~spdg~~l~sg~~dg~I~iwdl~~~~~~~~~ 585 (704)
.+.+++..++..++++-+.|++++||++.+++++.+.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 4455667778899999999999999999999988765
No 374
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=46.15 E-value=21 Score=27.86 Aligned_cols=29 Identities=21% Similarity=0.179 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHhcC
Q 005277 5 QVVEFVATYLKKKGFSEAENALQAEIQRN 33 (704)
Q Consensus 5 ~~~~~v~~yl~~~~~~~~~~~~~~e~~~~ 33 (704)
-++.+|.+||.-.||.-|-+.|..|++..
T Consensus 20 Li~~LVrEyLef~~l~~TlsVf~pEs~l~ 48 (82)
T 2d68_A 20 LVASLVAEFLQFFNLDFTLAVFQPETSTL 48 (82)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCCcchHHhhhhccCCC
Confidence 47889999999999999999999999875
No 375
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=45.42 E-value=68 Score=35.23 Aligned_cols=59 Identities=19% Similarity=0.285 Sum_probs=43.0
Q ss_pred CeeEEEEcCCCCEEEEEECC------------CcEEEEeCCCCcEEEEeecCC-CCEEEEEEecCCCEEEEE
Q 005277 507 DVDCVRWHINCNYIATGSSD------------KTVRLWDVSSGECVRIFIGHR-SMILSLAMSPDGRYMASG 565 (704)
Q Consensus 507 ~V~~v~~~p~~~~l~tgs~d------------g~I~iwd~~~~~~~~~~~~h~-~~i~~l~~spdg~~l~sg 565 (704)
....|+|+|.|+++++-..+ ..+.+.+..+++..+.+.++. ..++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 45779999999866654322 235566777788777776654 579999999999988765
No 376
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=41.54 E-value=4.4e+02 Score=29.88 Aligned_cols=146 Identities=10% Similarity=0.047 Sum_probs=73.0
Q ss_pred CCCEEEEEEcCC-CCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccC-------Ccc
Q 005277 351 HNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG-------HSG 422 (704)
Q Consensus 351 ~~~V~~~~fs~d-g~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------h~~ 422 (704)
.+.|.+++++|. ...+.+++..|-|...+ ..+. ....+.. ...
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~--DgG~---------------------------tW~~~~~~~~~~~~~~~ 64 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD--AGTS---------------------------KWIPLNDFIEAQDMNIM 64 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE--TTTT---------------------------EEEESCTTCCGGGGGGC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec--CCCC---------------------------CeeECccCCCcccccCC
Confidence 357999999986 45666677667654433 2110 0011111 124
Q ss_pred CeEEEEEcCCC-CEEEEEeCCCe----EEEE-eCCCCceeEEeec---------CCcCeeEEEEcCC-CCEEEEEeCCCe
Q 005277 423 PVYSASFSPLG-DFILSSSADTT----IRLW-STKLNANLVCYKG---------HNYPVWDVQFNPQ-GHYFASSSHDRT 486 (704)
Q Consensus 423 ~V~~l~~sp~~-~~l~s~s~Dg~----I~lw-d~~~~~~~~~~~~---------h~~~V~~v~~sp~-~~~l~sgs~dg~ 486 (704)
.|.+|++.|.. ..++.+..+.. -.|| ..+.++.-..... ....+..++++|. ...++.+...+.
T Consensus 65 ~i~~ia~dp~~~~~i~~~~g~~~~~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~g 144 (789)
T 1sqj_A 65 GTESIALDPNNPDRLYLAQGRYVGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEG 144 (789)
T ss_dssp SEEEEEEETTEEEEEEEEECSCTTSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSC
T ss_pred ceeEEEECCCCCCEEEEEeCccCCCcccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCC
Confidence 68999999853 34444433211 2333 3343433222211 0113567888884 345555553433
Q ss_pred EEEEECCCCceeEEecc------CCCCeeEEEEcCC-CCEEEEEECC
Q 005277 487 ARIWSMDRIQPLRIMAG------HLSDVDCVRWHIN-CNYIATGSSD 526 (704)
Q Consensus 487 i~lwd~~~~~~~~~~~~------~~~~V~~v~~~p~-~~~l~tgs~d 526 (704)
|. ...+.++.-..+.. ....+..+.++|. +..++++..+
T Consensus 145 l~-~S~DgG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 145 IW-KSSDRAKTWTNVTSIPDAFTNGIGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp EE-EESSTTSSCEEETTSCCCCSTTTCEEEEEECTTSTTCEEEEESS
T ss_pred EE-EECCCCcccCCCccCccccCCCCCeEEEEECCCCCCEEEEEEcC
Confidence 22 23333333232221 1245788999884 4566666654
No 377
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=41.42 E-value=92 Score=33.98 Aligned_cols=61 Identities=16% Similarity=0.254 Sum_probs=43.9
Q ss_pred CCeeEEEEcCCCCEEEEEEC------------CCcEEEEeCCCCcEEEEeecC-CCCEEEEEEecCCCEEEEEe
Q 005277 506 SDVDCVRWHINCNYIATGSS------------DKTVRLWDVSSGECVRIFIGH-RSMILSLAMSPDGRYMASGD 566 (704)
Q Consensus 506 ~~V~~v~~~p~~~~l~tgs~------------dg~I~iwd~~~~~~~~~~~~h-~~~i~~l~~spdg~~l~sg~ 566 (704)
.....|.|.++|.+.++... ...|..++..+|+..+.+.+. ...++.++|+||++.|+++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 45677999999987774321 125677777788877666543 35789999999999887763
No 378
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=39.37 E-value=1.5e+02 Score=33.30 Aligned_cols=38 Identities=8% Similarity=0.269 Sum_probs=30.7
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeec
Q 005277 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG 461 (704)
Q Consensus 422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~~~~~~~ 461 (704)
..|.++.+. ..++++-+.|.++|+|++.+++++....-
T Consensus 222 ~~Is~~~~~--~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLFH--ERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEET--TTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEeccC--CcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 346665554 77999999999999999999998877654
No 379
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=39.29 E-value=2.9e+02 Score=27.22 Aligned_cols=196 Identities=10% Similarity=0.061 Sum_probs=110.5
Q ss_pred CCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEe
Q 005277 361 QDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSS 440 (704)
Q Consensus 361 ~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s 440 (704)
++..++++.+.+|+|+--.+........ .+.......+... ..+..+........++..+
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~-------------------~~~g~~~~~lke~-D~l~~~~~~~~~~~ll~~T 65 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGT-------------------GGKGLSSFDLNDG-DEIVIALCVNTHDYLFMIS 65 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCS-------------------SCCCEECCCCCTT-CCEEEEEEEETTCEEEEEE
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhcccc-------------------CCCCceecccCCC-CEEEEEEEECCCCEEEEEE
Confidence 4567788999999999887764321110 0000001112222 3344444444566777788
Q ss_pred CCCeEEEEeCC---CC------ce---eEEeecCCcCeeEEEEcC---CCCEEEEEeCCCeEEEEECCCCc-------ee
Q 005277 441 ADTTIRLWSTK---LN------AN---LVCYKGHNYPVWDVQFNP---QGHYFASSSHDRTARIWSMDRIQ-------PL 498 (704)
Q Consensus 441 ~Dg~I~lwd~~---~~------~~---~~~~~~h~~~V~~v~~sp---~~~~l~sgs~dg~i~lwd~~~~~-------~~ 498 (704)
..|.++-.... .. .. ...+.. ...|..+...+ ++.+++..+..|.++...+.... ..
T Consensus 66 ~~G~~~~~~~~~ip~~~r~~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~ 144 (312)
T 1suu_A 66 NEGKLYLINAYEIKDSSRASKGQNISELINLGD-QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIV 144 (312)
T ss_dssp TTSEEEEEEGGGSCC-------CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEEC
T ss_pred CCCeEEEEEHHHCCCCCccCCCcChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEE
Confidence 88887766543 11 11 111222 23344443332 46778888999999998875322 11
Q ss_pred EEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC-------CcEEEEeec-CCCCEEEEEEecCCCEEEEEeCCCe
Q 005277 499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-------GECVRIFIG-HRSMILSLAMSPDGRYMASGDEDGT 570 (704)
Q Consensus 499 ~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~-------~~~~~~~~~-h~~~i~~l~~spdg~~l~sg~~dg~ 570 (704)
..+.. .+.+..+........++..+.+|.+..+.... ++-++.+.- ....|.++..-.++..+++.+..|.
T Consensus 145 i~L~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~ 223 (312)
T 1suu_A 145 IKLND-KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGY 223 (312)
T ss_dssp BCCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSE
T ss_pred EecCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCc
Confidence 12222 34565555555566788888999988887642 122222221 2345666666556677888889999
Q ss_pred EEEEeCCC
Q 005277 571 IMMWDLAS 578 (704)
Q Consensus 571 I~iwdl~~ 578 (704)
.+..++..
T Consensus 224 ~kr~~~~e 231 (312)
T 1suu_A 224 GKRLNMSK 231 (312)
T ss_dssp EEEEEGGG
T ss_pred eEEEEHHH
Confidence 88888753
No 380
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=38.56 E-value=3.1e+02 Score=27.31 Aligned_cols=154 Identities=10% Similarity=0.094 Sum_probs=90.6
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCeEEEE---eCCCC------ceeE---EeecCCcCeeEE-EEcC--CCCEEEEEeCCCe
Q 005277 422 GPVYSASFSPLGDFILSSSADTTIRLW---STKLN------ANLV---CYKGHNYPVWDV-QFNP--QGHYFASSSHDRT 486 (704)
Q Consensus 422 ~~V~~l~~sp~~~~l~s~s~Dg~I~lw---d~~~~------~~~~---~~~~h~~~V~~v-~~sp--~~~~l~sgs~dg~ 486 (704)
..+..+........|+.-+..|.+.-. ++... ..+. .+. ....|..+ .+.. +..+++.++.+|.
T Consensus 42 D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~ 120 (327)
T 3uc1_A 42 DIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGL 120 (327)
T ss_dssp GCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSE
T ss_pred CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCE
Confidence 345545444455667766777776544 34322 1111 122 23345444 3432 5789999999999
Q ss_pred EEEEECCCCce-----eE--EeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC--C----Cc---EEEEee-cCCCC
Q 005277 487 ARIWSMDRIQP-----LR--IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS--S----GE---CVRIFI-GHRSM 549 (704)
Q Consensus 487 i~lwd~~~~~~-----~~--~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~--~----~~---~~~~~~-~h~~~ 549 (704)
++-..+..... +. .+.. .+.+..+........|+..+..|.+..+... . ++ -+..+. .....
T Consensus 121 iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~ 199 (327)
T 3uc1_A 121 VKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDR 199 (327)
T ss_dssp EEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCC
T ss_pred EEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCE
Confidence 99988754221 11 1222 3445555554556778888899998888765 2 11 111111 23446
Q ss_pred EEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 005277 550 ILSLAMSPDGRYMASGDEDGTIMMWDLA 577 (704)
Q Consensus 550 i~~l~~spdg~~l~sg~~dg~I~iwdl~ 577 (704)
|.++...+.+.+|+..+..|.++.-.+.
T Consensus 200 Vv~~~~~~~~~~ll~~T~~G~~Krt~l~ 227 (327)
T 3uc1_A 200 LLSLNVVREGTYLLVATSGGYAKRTAIE 227 (327)
T ss_dssp EEEEEECCTTCEEEEEETTSEEEEEEGG
T ss_pred EEEEEEECCCCEEEEEeCCCcEEEEEHH
Confidence 7777766667788899999998888764
No 381
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=36.38 E-value=3.2e+02 Score=26.84 Aligned_cols=195 Identities=12% Similarity=0.048 Sum_probs=103.8
Q ss_pred CCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEe
Q 005277 361 QDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSS 440 (704)
Q Consensus 361 ~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s 440 (704)
|+..++++.+.+|+|+--.+........ .+.......+..+ ..+..+........|+..+
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~-------------------~~~g~~~~~~ke~-D~l~~~~~~~~~~~ll~fT 60 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRR-------------------GGKGKSAARIKEE-DFIDRLLVANTHDHILCFS 60 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC----------------------------------------CCEEEEEEEETTCEEEEEE
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhcc-------------------CCCCceeeeeCCC-CEEEEEEEECCCCEEEEEE
Confidence 3556788899999998776654211100 0000000111222 3344444444556677777
Q ss_pred CCCeEEEEe---CCCC------ceeE---EeecCCcCeeEEEEc---CCCCEEEEEeCCCeEEEEECCCCc-----eeEE
Q 005277 441 ADTTIRLWS---TKLN------ANLV---CYKGHNYPVWDVQFN---PQGHYFASSSHDRTARIWSMDRIQ-----PLRI 500 (704)
Q Consensus 441 ~Dg~I~lwd---~~~~------~~~~---~~~~h~~~V~~v~~s---p~~~~l~sgs~dg~i~lwd~~~~~-----~~~~ 500 (704)
..|.+.-.. +... ..+. .+. ....|.++... .++.+++..+..|.++-..+.... -+..
T Consensus 61 ~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~ 139 (307)
T 1zi0_A 61 SRGRVYSMKVYQLPEATRGARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVA 139 (307)
T ss_dssp TTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEES
T ss_pred CCCEEEEEEhhHCcCCCCCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEE
Confidence 788765554 3222 1111 122 23345555432 356688999999999999774221 1111
Q ss_pred --eccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC-------CcEEEEee-cCCCCEEEEEEecCCCEEEEEeCCCe
Q 005277 501 --MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-------GECVRIFI-GHRSMILSLAMSPDGRYMASGDEDGT 570 (704)
Q Consensus 501 --~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~-------~~~~~~~~-~h~~~i~~l~~spdg~~l~sg~~dg~ 570 (704)
+..+ +.+..+....+...++..+.+|.+..+.... ..-++.+. .....|.++...+++..+++.+..|.
T Consensus 140 i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~ 218 (307)
T 1zi0_A 140 IKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGY 218 (307)
T ss_dssp SCCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSE
T ss_pred EEECCC-CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCc
Confidence 2223 4555555545556788888899888887632 11222221 12345666665555667888888898
Q ss_pred EEEEeCC
Q 005277 571 IMMWDLA 577 (704)
Q Consensus 571 I~iwdl~ 577 (704)
++-.++.
T Consensus 219 ~Kr~~~~ 225 (307)
T 1zi0_A 219 GKRTAVA 225 (307)
T ss_dssp EEEECGG
T ss_pred eEEEEHH
Confidence 8887763
No 382
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=34.69 E-value=48 Score=37.25 Aligned_cols=37 Identities=16% Similarity=0.414 Sum_probs=30.4
Q ss_pred CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCcEEEEee
Q 005277 506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI 544 (704)
Q Consensus 506 ~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~ 544 (704)
..|.|+.+ +..++++-+.|+++|+|++.+++++....
T Consensus 222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 34666655 46799999999999999999999887764
No 383
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=29.17 E-value=2.3e+02 Score=23.04 Aligned_cols=23 Identities=9% Similarity=0.102 Sum_probs=11.5
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEeC
Q 005277 552 SLAMSPDGRYMASGDEDGTIMMWDL 576 (704)
Q Consensus 552 ~l~~spdg~~l~sg~~dg~I~iwdl 576 (704)
.+.+..+|++++... ++.+ +|.-
T Consensus 60 ~l~l~~dGNLVl~d~-~~~~-iW~S 82 (113)
T 3mez_B 60 FMRLGHSGELDITDD-RLNT-VFVS 82 (113)
T ss_dssp EEEECTTSCEEEECT-TSCE-EEEC
T ss_pred EEEEeCCCcEEEECC-CCCE-EEEC
Confidence 455666666555432 3333 5653
No 384
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=28.64 E-value=4.3e+02 Score=25.90 Aligned_cols=144 Identities=6% Similarity=0.020 Sum_probs=79.3
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCceeE---------EeecCCcCeeEEEEcCCCCEEEEEeCCCeEEEEECC---C----
Q 005277 431 PLGDFILSSSADTTIRLWSTKLNANLV---------CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD---R---- 494 (704)
Q Consensus 431 p~~~~l~s~s~Dg~I~lwd~~~~~~~~---------~~~~h~~~V~~v~~sp~~~~l~sgs~dg~i~lwd~~---~---- 494 (704)
|+..++++.+.+|.|+--.+....... .++... .+..+........++..+..|.++-+... .
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D-~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEED-FIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC--------------------C-CEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCC-EEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 355678889999999887765432211 122233 33333334445566667777876666542 1
Q ss_pred --CceeE---EeccCCCCeeEEEEc---CCCCEEEEEECCCcEEEEeCCC-------CcEEEEeecCCCCEEEEEEecCC
Q 005277 495 --IQPLR---IMAGHLSDVDCVRWH---INCNYIATGSSDKTVRLWDVSS-------GECVRIFIGHRSMILSLAMSPDG 559 (704)
Q Consensus 495 --~~~~~---~~~~~~~~V~~v~~~---p~~~~l~tgs~dg~I~iwd~~~-------~~~~~~~~~h~~~i~~l~~spdg 559 (704)
+.++. .+. ....|.++..- .++.+++..+.+|.++-..+.. |.....+..+ +.+..+......
T Consensus 80 a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~ 157 (307)
T 1zi0_A 80 ARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGE 157 (307)
T ss_dssp SCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTT
T ss_pred CCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCC
Confidence 22211 112 23345555332 3456889999999999987641 2111112233 555555555555
Q ss_pred CEEEEEeCCCeEEEEeCC
Q 005277 560 RYMASGDEDGTIMMWDLA 577 (704)
Q Consensus 560 ~~l~sg~~dg~I~iwdl~ 577 (704)
..++..+.+|.+..++..
T Consensus 158 ~~i~l~T~~G~~irf~~~ 175 (307)
T 1zi0_A 158 DEVMLFSAEGKVVRFKES 175 (307)
T ss_dssp CEEEEEETTSEEEEEEGG
T ss_pred CEEEEECCCCcEEEEEHH
Confidence 677788888988888764
No 385
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=27.97 E-value=4.8e+02 Score=26.31 Aligned_cols=151 Identities=15% Similarity=0.169 Sum_probs=82.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-----------eEEeec-CCcCeeEEEEcCCCCEEEEEeCCCeEEEE
Q 005277 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNAN-----------LVCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIW 490 (704)
Q Consensus 423 ~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~-----------~~~~~~-h~~~V~~v~~sp~~~~l~sgs~dg~i~lw 490 (704)
.+..++.+.-..+.+.-+.||.|..|-...... ...+.. ....|..|+.. ..+.+.-..+|.|..|
T Consensus 106 ~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~w 183 (389)
T 3kci_A 106 FIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYTW 183 (389)
T ss_dssp CEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEE
T ss_pred ceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEEe
Confidence 345556665566677778899999996542111 011111 12245555553 4455666788999999
Q ss_pred ECCCC------------ceeEEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC-Cc---------EE-EEeec-C
Q 005277 491 SMDRI------------QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-GE---------CV-RIFIG-H 546 (704)
Q Consensus 491 d~~~~------------~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~-~~---------~~-~~~~~-h 546 (704)
-.... .|..........|..++......+.++-..+|.|+.|-... ++ .. ..+.. .
T Consensus 184 G~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~ 263 (389)
T 3kci_A 184 GKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLT 263 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGT
T ss_pred CCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccC
Confidence 75421 11111111223466666543335666667899999996432 11 11 11111 1
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 005277 547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLA 577 (704)
Q Consensus 547 ~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~ 577 (704)
...|..++.. ..+.++-..+|.|..|=..
T Consensus 264 ~~~v~~v~~G--~~hs~alt~~G~v~~wG~n 292 (389)
T 3kci_A 264 GLGVVKVECG--SQFSVALTKSGAVYTWGKG 292 (389)
T ss_dssp TSCEEEEEEE--TTEEEEEETTSCEEEEECC
T ss_pred CCcEEEEeCC--CCEEEEEeCCCeEEEEeCC
Confidence 2246666554 3445556789999999754
No 386
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=26.72 E-value=5.1e+02 Score=26.14 Aligned_cols=151 Identities=11% Similarity=0.087 Sum_probs=82.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce--------e---EEeec-CCcCeeEEEEcCCCCEEEEEeCCCeEEEE
Q 005277 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNAN--------L---VCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIW 490 (704)
Q Consensus 423 ~V~~l~~sp~~~~l~s~s~Dg~I~lwd~~~~~~--------~---~~~~~-h~~~V~~v~~sp~~~~l~sgs~dg~i~lw 490 (704)
.|..++-. ....+.-..||.|..|-...... . ..+.. ....+..++.+.-..+.+.-..||.|..|
T Consensus 54 ~i~~i~~G--~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~w 131 (389)
T 3kci_A 54 RPVQLIGG--EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSW 131 (389)
T ss_dssp CEEEEEEE--TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEE
T ss_pred ceEEEEeC--CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEE
Confidence 34445433 44555667789999996442211 1 11111 22345556777666777777889999999
Q ss_pred ECCCCc-----------eeEEecc-CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC-Cc----------EEEEee-cC
Q 005277 491 SMDRIQ-----------PLRIMAG-HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-GE----------CVRIFI-GH 546 (704)
Q Consensus 491 d~~~~~-----------~~~~~~~-~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~~~-~~----------~~~~~~-~h 546 (704)
-..... ....+.. ....|..|+. -....++-..+|.|+.|-... ++ ....+. ..
T Consensus 132 G~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~--G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~ 209 (389)
T 3kci_A 132 GEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAA--GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQ 209 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEE--CSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGT
T ss_pred eCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEe--CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccC
Confidence 653210 0111111 1224555554 334556666899999996532 11 111111 12
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 005277 547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLA 577 (704)
Q Consensus 547 ~~~i~~l~~spdg~~l~sg~~dg~I~iwdl~ 577 (704)
...|..++......+.++-..||.|..|-..
T Consensus 210 ~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n 240 (389)
T 3kci_A 210 GHRVVDIACGSGDAQTLCLTDDDTVWSWGDG 240 (389)
T ss_dssp TSCEEEEEECCSSCEEEEEETTTEEEEEECC
T ss_pred CCeEEEEEEcCCCcEEEEEccCCEEEEEeCC
Confidence 2356666664333566677889999999654
No 387
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=26.05 E-value=5.3e+02 Score=26.12 Aligned_cols=154 Identities=10% Similarity=-0.029 Sum_probs=85.3
Q ss_pred cCCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEE
Q 005277 360 SQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSS 439 (704)
Q Consensus 360 s~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~ 439 (704)
=|+..++++.+.+|+|+--.+....... ..+.......+. ....+..+........|+..
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~-------------------r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~f 63 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQR-------------------RGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTF 63 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTC-------------------CCCCCSEEEECS-CCCCEEEEEEECTTCEEEEE
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhc-------------------cCCCCceecccC-CCCEEEEEEEecCCCEEEEE
Confidence 3677889999999999877665321100 000011112222 23455555555556677777
Q ss_pred eCCCeEEEEe---CCC------CceeE---EeecCCcCeeEEEEcC---CCCEEEEEeCCCeEEEEECCCCce-----eE
Q 005277 440 SADTTIRLWS---TKL------NANLV---CYKGHNYPVWDVQFNP---QGHYFASSSHDRTARIWSMDRIQP-----LR 499 (704)
Q Consensus 440 s~Dg~I~lwd---~~~------~~~~~---~~~~h~~~V~~v~~sp---~~~~l~sgs~dg~i~lwd~~~~~~-----~~ 499 (704)
+..|.+.-+. +.. |..+. .+. ....|.++.... .+.+++.++..|.++...+..... +.
T Consensus 64 T~~G~~~~~~~~eip~~~r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ 142 (370)
T 3l6v_A 64 TSSGKVFWLPVHQLPEAGSNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKI 142 (370)
T ss_dssp ETTSEEEEEEGGGSCBCCTTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEE
T ss_pred eCCCeEEEEEHHHCcCCCcccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceE
Confidence 7788766554 322 11111 122 233455544332 456899999999999988643221 11
Q ss_pred Eec-cCCCCeeEEEEcCCCCEEEEEECCCcEEEEeC
Q 005277 500 IMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDV 534 (704)
Q Consensus 500 ~~~-~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~ 534 (704)
.+. ...+.+..+........|+..+.+|.+..+..
T Consensus 143 ai~L~~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~ 178 (370)
T 3l6v_A 143 AINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGE 178 (370)
T ss_dssp SSCCCTTCCEEEEEEECSCCEEEEEETTSEEEEEEG
T ss_pred EEEeCCCCEEEEEEEeCCCceEEEEeCCCeEEEEEc
Confidence 111 12344444544445567778888888877765
No 388
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=25.80 E-value=2e+02 Score=31.53 Aligned_cols=59 Identities=12% Similarity=0.128 Sum_probs=40.3
Q ss_pred CeEEEEEcCCCCEEEEEeCC------------CeEEEEeCCCCceeEEeecC-CcCeeEEEEcCCCCEEEEE
Q 005277 423 PVYSASFSPLGDFILSSSAD------------TTIRLWSTKLNANLVCYKGH-NYPVWDVQFNPQGHYFASS 481 (704)
Q Consensus 423 ~V~~l~~sp~~~~l~s~s~D------------g~I~lwd~~~~~~~~~~~~h-~~~V~~v~~sp~~~~l~sg 481 (704)
..-.|.|+|.|+++++-..+ ..+.+.+..+++....+.++ .+.++.++|+|+++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 34678999999966654322 23555566666665555544 5679999999999887665
No 389
>2eap_A Lymphocyte cytosolic protein 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.91 E-value=48 Score=26.01 Aligned_cols=18 Identities=33% Similarity=0.610 Sum_probs=15.3
Q ss_pred HHHHHHHhcCchHHHHHH
Q 005277 9 FVATYLKKKGFSEAENAL 26 (704)
Q Consensus 9 ~v~~yl~~~~~~~~~~~~ 26 (704)
-|.+||++.||.+.|...
T Consensus 26 ~VadWLkk~g~~~cd~lv 43 (90)
T 2eap_A 26 SLADYFKKLNYKDCEKAV 43 (90)
T ss_dssp THHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHcCCchHHHHH
Confidence 477999999999988665
No 390
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=23.75 E-value=2.7e+02 Score=30.35 Aligned_cols=60 Identities=12% Similarity=0.109 Sum_probs=41.9
Q ss_pred CeeEEEEcCCCCEEEEEeC------------CCeEEEEECCCCceeEEeccC-CCCeeEEEEcCCCCEEEEEE
Q 005277 465 PVWDVQFNPQGHYFASSSH------------DRTARIWSMDRIQPLRIMAGH-LSDVDCVRWHINCNYIATGS 524 (704)
Q Consensus 465 ~V~~v~~sp~~~~l~sgs~------------dg~i~lwd~~~~~~~~~~~~~-~~~V~~v~~~p~~~~l~tgs 524 (704)
....|.|.++|.+.+.... .+.+..++..+++..+.+.+. ...++.++|+||++.|+++-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 3567999999987663321 125666676677766655543 35689999999999988764
No 391
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=20.78 E-value=6.1e+02 Score=24.99 Aligned_cols=233 Identities=9% Similarity=0.022 Sum_probs=0.0
Q ss_pred CCCCEEEEEeCCCcEEEEEcccCCccccccccCCCCCCCCcccccCCCCCccceeeccCCccCeEEEEEcCCCCEEEEEe
Q 005277 361 QDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSS 440 (704)
Q Consensus 361 ~dg~~lasg~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s 440 (704)
|+..++++.+.+|+|+--.+............... ...+..+........|+..+
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke-------------------------~D~l~~~~~~~t~d~ll~fT 57 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-------------------------TDRLLAMLEMNTKDVLLLFT 57 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-------------------------TCCEEEEEEEETTSEEEEEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCC-------------------------CCEEEEEEEECCCCEEEEEE
Q ss_pred CCCeEEEEeC---------CCCc---eeEEeecCCcCeeEEEEcC--CCCEEEEEeCCCeEEEEEC--------CCCcee
Q 005277 441 ADTTIRLWST---------KLNA---NLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRTARIWSM--------DRIQPL 498 (704)
Q Consensus 441 ~Dg~I~lwd~---------~~~~---~~~~~~~h~~~V~~v~~sp--~~~~l~sgs~dg~i~lwd~--------~~~~~~ 498 (704)
..|.+.-... ..|. ....+.....-+..+...+ ++.+++.++.+|.++-..+ ..+...
T Consensus 58 ~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~a 137 (323)
T 1wp5_A 58 NKGNYLYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTG 137 (323)
T ss_dssp TTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEEC
T ss_pred CCCEEEEEEHHHCcCCCCCCCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEE
Q ss_pred EEeccCCCCeeEEEEcCCCCEEEEEECCCcEEEEeC-------CCCcEEEEeecCCCC-EEEEEEecCCC-EEEEEeCCC
Q 005277 499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDV-------SSGECVRIFIGHRSM-ILSLAMSPDGR-YMASGDEDG 569 (704)
Q Consensus 499 ~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~I~iwd~-------~~~~~~~~~~~h~~~-i~~l~~spdg~-~l~sg~~dg 569 (704)
..+... +.+..+........++..+.+|.+..+.. ++.+-++.+.-..+. |.++...+++. .|++.+..|
T Consensus 138 i~l~e~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G 216 (323)
T 1wp5_A 138 INLKND-DQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRG 216 (323)
T ss_dssp SCCCTT-CCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTS
T ss_pred EEeCCC-CEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCC
Q ss_pred eEEEEeCCCCeeee----------eecCCCceeeeeeeeeeehccccccccccccccceeeeeeeEEeecccCCCCCEEE
Q 005277 570 TIMMWDLASGRCVT----------PLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLA 639 (704)
Q Consensus 570 ~I~iwdl~~~~~~~----------~~~~h~~~V~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~la 639 (704)
..+..++..-.... .+......+..+.. ..++..++
T Consensus 217 ~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~~~~l~~~~~----------------------------------v~~~~~i~ 262 (323)
T 1wp5_A 217 AVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVV----------------------------------AQDSDTIY 262 (323)
T ss_dssp EEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEE----------------------------------ECTTCEEE
T ss_pred ceEEEEHHHccccCCCCCCEECeeecCCCCceEEEEEE----------------------------------eCCCCeEE
Q ss_pred EEeCCCcEEEEeCC
Q 005277 640 SGSADCTVKLWDVT 653 (704)
Q Consensus 640 sgs~Dg~V~iWd~~ 653 (704)
..+..|.+.-..+.
T Consensus 263 ~it~~g~~ir~~~~ 276 (323)
T 1wp5_A 263 LQTEKSFIETIKVG 276 (323)
T ss_dssp EEETTSCEEEEEGG
T ss_pred EEeCCCeEEEEEhh
Done!