Query 005278
Match_columns 704
No_of_seqs 563 out of 5356
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 20:43:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005278.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005278hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3omv_A RAF proto-oncogene seri 100.0 2.1E-54 7.1E-59 437.4 17.9 264 414-697 35-303 (307)
2 4asz_A BDNF/NT-3 growth factor 100.0 3.6E-55 1.2E-59 443.4 11.4 260 415-696 13-291 (299)
3 4aoj_A High affinity nerve gro 100.0 1.9E-54 6.5E-59 444.3 15.5 259 415-695 41-320 (329)
4 4gt4_A Tyrosine-protein kinase 100.0 1.7E-54 5.8E-59 440.4 11.4 255 416-692 27-304 (308)
5 3hmm_A TGF-beta receptor type- 100.0 1.6E-51 5.6E-56 419.9 20.0 268 416-695 4-298 (303)
6 4fih_A Serine/threonine-protei 100.0 6.6E-52 2.3E-56 424.1 16.0 249 415-687 74-323 (346)
7 4ase_A Vascular endothelial gr 100.0 4.3E-52 1.5E-56 430.2 13.5 265 412-697 61-350 (353)
8 4g3f_A NF-kappa-beta-inducing 100.0 1.6E-51 5.4E-56 420.1 15.7 256 414-695 57-317 (336)
9 4aw0_A HPDK1, 3-phosphoinositi 100.0 4.6E-52 1.6E-56 418.8 11.2 250 415-688 32-285 (311)
10 4b9d_A Serine/threonine-protei 100.0 1.3E-51 4.4E-56 422.7 12.8 249 415-687 24-276 (350)
11 3fpq_A Serine/threonine-protei 100.0 1E-50 3.4E-55 407.5 18.9 246 418-687 29-282 (290)
12 4fie_A Serine/threonine-protei 100.0 1.3E-50 4.6E-55 424.7 16.6 249 415-687 151-400 (423)
13 3hyh_A Carbon catabolite-derep 100.0 3.4E-50 1.2E-54 399.9 15.6 245 415-687 13-262 (275)
14 3ubd_A Ribosomal protein S6 ki 100.0 3.1E-50 1.1E-54 405.7 7.9 242 415-682 24-271 (304)
15 4g31_A Eukaryotic translation 100.0 2.4E-48 8.3E-53 394.2 15.4 249 415-687 5-279 (299)
16 4b99_A Mitogen-activated prote 100.0 2.2E-45 7.6E-50 386.7 17.9 268 414-687 53-344 (398)
17 4f9c_A Cell division cycle 7-r 100.0 1.6E-45 5.6E-50 383.8 15.8 200 411-619 17-249 (361)
18 2qkw_B Protein kinase; three-h 100.0 2E-44 6.7E-49 373.9 17.9 283 405-695 29-316 (321)
19 3uim_A Brassinosteroid insensi 100.0 2.7E-44 9.2E-49 373.8 18.7 286 400-691 15-308 (326)
20 3rgz_A Protein brassinosteroid 100.0 1.7E-43 5.9E-48 409.2 26.8 338 4-352 316-756 (768)
21 3uto_A Twitchin; kinase, muscl 100.0 4.1E-44 1.4E-48 396.1 19.9 252 414-687 156-410 (573)
22 3v5w_A G-protein coupled recep 100.0 2.2E-44 7.7E-49 394.0 16.8 248 414-686 188-448 (689)
23 3s95_A LIMK-1, LIM domain kina 100.0 3.7E-43 1.3E-47 362.5 20.3 264 415-698 10-286 (310)
24 3soc_A Activin receptor type-2 100.0 2.1E-43 7.3E-48 365.9 17.4 270 414-695 23-319 (322)
25 2psq_A Fibroblast growth facto 100.0 3.7E-43 1.3E-47 370.7 17.0 262 414-697 80-367 (370)
26 3fxz_A Serine/threonine-protei 100.0 8.4E-43 2.9E-47 356.9 17.8 250 414-687 19-269 (297)
27 2nru_A Interleukin-1 receptor- 100.0 7.3E-42 2.5E-46 352.3 24.4 282 401-694 11-306 (307)
28 3cbl_A C-FES, proto-oncogene t 100.0 1.1E-43 3.6E-48 376.2 10.9 260 414-695 113-375 (377)
29 3ugc_A Tyrosine-protein kinase 100.0 2.1E-43 7.3E-48 361.6 10.5 278 414-697 9-294 (295)
30 3kul_A Ephrin type-A receptor 100.0 6.6E-43 2.3E-47 362.4 13.7 262 414-697 48-316 (325)
31 3p86_A Serine/threonine-protei 100.0 1.2E-42 4E-47 357.7 15.3 262 412-697 34-301 (309)
32 3lb7_A RAF proto-oncogene seri 100.0 3E-42 1E-46 354.5 17.7 264 414-697 35-303 (307)
33 3sxs_A Cytoplasmic tyrosine-pr 100.0 1.5E-42 5.2E-47 350.0 13.2 259 414-696 7-266 (268)
34 2c30_A Serine/threonine-protei 100.0 6.6E-42 2.3E-46 354.2 18.3 261 403-687 23-294 (321)
35 2qol_A Ephrin receptor; recept 100.0 1.3E-42 4.6E-47 366.6 13.3 261 414-696 44-311 (373)
36 3q4u_A Activin receptor type-1 100.0 1.4E-41 4.7E-46 349.3 20.2 265 414-692 7-300 (301)
37 4hcu_A Tyrosine-protein kinase 100.0 1.2E-42 4.2E-47 350.8 11.6 257 415-695 10-267 (269)
38 3fe3_A MAP/microtubule affinit 100.0 5.1E-42 1.7E-46 355.2 15.8 248 413-687 13-264 (328)
39 3vhe_A Vascular endothelial gr 100.0 1.7E-42 6E-47 365.4 12.5 268 408-696 15-357 (359)
40 3zgw_A Maternal embryonic leuc 100.0 2.4E-42 8.2E-47 359.6 12.2 250 413-687 8-260 (347)
41 3tki_A Serine/threonine-protei 100.0 4.4E-42 1.5E-46 355.7 14.1 253 414-687 6-261 (323)
42 3rgz_A Protein brassinosteroid 100.0 5E-41 1.7E-45 388.6 24.1 333 4-337 292-715 (768)
43 4aw2_A Serine/threonine-protei 100.0 5.5E-42 1.9E-46 367.1 14.6 263 406-687 65-338 (437)
44 3tt0_A Basic fibroblast growth 100.0 6.4E-42 2.2E-46 363.4 15.0 263 414-698 68-356 (382)
45 3poz_A Epidermal growth factor 100.0 2.8E-42 9.6E-47 358.3 11.6 258 415-695 15-279 (327)
46 3niz_A Rhodanese family protei 100.0 3.4E-41 1.1E-45 347.4 19.0 268 413-687 19-300 (311)
47 3l9p_A Anaplastic lymphoma kin 100.0 2.2E-42 7.5E-47 364.6 10.0 261 414-696 70-347 (367)
48 1luf_A Muscle-specific tyrosin 100.0 3.3E-42 1.1E-46 360.8 11.1 265 412-698 44-339 (343)
49 1t46_A HOMO sapiens V-KIT hard 100.0 1.1E-41 3.7E-46 352.1 14.8 264 414-698 22-311 (313)
50 1tki_A Titin; serine kinase, m 100.0 4E-41 1.4E-45 348.0 18.9 251 414-687 4-257 (321)
51 3gen_A Tyrosine-protein kinase 100.0 8.4E-42 2.9E-46 347.5 13.3 259 413-695 22-281 (283)
52 1rjb_A FL cytokine receptor; k 100.0 1.1E-41 3.7E-46 357.1 14.4 266 413-699 43-339 (344)
53 3op5_A Serine/threonine-protei 100.0 1.4E-41 4.7E-46 358.7 15.1 272 413-697 33-332 (364)
54 3og7_A AKAP9-BRAF fusion prote 100.0 1E-41 3.4E-46 347.9 13.5 261 413-694 22-288 (289)
55 2eva_A TAK1 kinase - TAB1 chim 100.0 2.5E-41 8.7E-46 347.8 16.2 257 415-698 8-267 (307)
56 2ivs_A Proto-oncogene tyrosine 100.0 1.2E-41 4E-46 352.1 13.7 260 414-695 22-312 (314)
57 1csn_A Casein kinase-1; phosph 100.0 9.4E-41 3.2E-45 342.5 20.3 265 414-698 9-287 (298)
58 3mdy_A Bone morphogenetic prot 100.0 2.7E-40 9.2E-45 345.5 24.0 274 409-696 31-333 (337)
59 1o6l_A RAC-beta serine/threoni 100.0 4.6E-41 1.6E-45 349.0 17.3 248 414-687 4-260 (337)
60 2izr_A Casein kinase I isoform 100.0 7.4E-41 2.5E-45 348.3 18.2 264 414-696 8-283 (330)
61 2yab_A Death-associated protei 100.0 1.2E-40 4.1E-45 349.0 19.6 251 414-687 11-272 (361)
62 1k9a_A Carboxyl-terminal SRC k 100.0 3.3E-41 1.1E-45 365.2 15.7 252 414-695 192-446 (450)
63 4eqm_A Protein kinase; transfe 100.0 3E-41 1E-45 345.0 13.9 261 414-694 10-275 (294)
64 4f0f_A Serine/threonine-protei 100.0 8.7E-41 3E-45 340.8 17.1 255 414-692 18-287 (287)
65 1mp8_A Focal adhesion kinase 1 100.0 2.5E-41 8.6E-46 343.5 13.0 259 414-696 14-278 (281)
66 2pvf_A Fibroblast growth facto 100.0 4.3E-41 1.5E-45 350.8 15.0 262 414-697 34-321 (334)
67 3qup_A Tyrosine-protein kinase 100.0 2.1E-41 7.2E-46 351.6 12.3 262 412-695 20-299 (323)
68 1kob_A Twitchin; kinase, intra 100.0 1.5E-40 5.3E-45 351.3 19.0 252 414-687 50-304 (387)
69 4euu_A Serine/threonine-protei 100.0 3.1E-40 1.1E-44 342.0 20.7 272 415-692 9-307 (319)
70 3lxp_A Non-receptor tyrosine-p 100.0 9.6E-41 3.3E-45 345.4 16.8 274 417-700 33-316 (318)
71 3h4j_B AMPK kdaid, SNF1-like p 100.0 4.3E-41 1.5E-45 348.8 14.1 246 414-687 8-258 (336)
72 3kex_A Receptor tyrosine-prote 100.0 8.6E-41 2.9E-45 346.9 16.4 258 415-695 13-277 (325)
73 3dtc_A Mitogen-activated prote 100.0 4.2E-41 1.4E-45 340.1 13.6 254 414-692 6-271 (271)
74 2xir_A Vascular endothelial gr 100.0 5.5E-41 1.9E-45 347.3 14.8 269 408-697 20-313 (316)
75 1b6c_B TGF-B superfamily recep 100.0 4.8E-40 1.6E-44 344.3 22.0 275 408-696 35-338 (342)
76 4e5w_A Tyrosine-protein kinase 100.0 3.9E-41 1.3E-45 346.1 13.3 269 415-693 21-301 (302)
77 3t9t_A Tyrosine-protein kinase 100.0 2.6E-41 8.9E-46 340.8 11.1 257 415-695 8-265 (267)
78 2i1m_A Macrophage colony-stimu 100.0 2.7E-41 9.4E-46 352.3 11.6 267 411-698 42-330 (333)
79 3soa_A Calcium/calmodulin-depe 100.0 2.8E-40 9.5E-45 355.3 19.6 253 413-687 9-267 (444)
80 1ob3_A PFPK5, cell division co 100.0 6.4E-41 2.2E-45 341.7 14.0 266 415-687 2-280 (288)
81 2y0a_A Death-associated protei 100.0 1.5E-40 5E-45 344.9 16.9 250 415-687 11-271 (326)
82 1qcf_A Haematopoetic cell kina 100.0 1.4E-41 4.7E-46 368.9 9.5 259 413-696 186-446 (454)
83 2w1i_A JAK2; chromosomal rearr 100.0 3.6E-41 1.2E-45 350.0 12.3 274 415-697 41-325 (326)
84 3c0i_A Peripheral plasma membr 100.0 2.4E-40 8.2E-45 346.9 18.5 251 415-687 24-286 (351)
85 3lxl_A Tyrosine-protein kinase 100.0 5.5E-41 1.9E-45 348.9 13.1 271 415-696 23-305 (327)
86 3txo_A PKC-L, NPKC-ETA, protei 100.0 5.5E-41 1.9E-45 350.7 13.2 244 413-682 21-269 (353)
87 3o0g_A Cell division protein k 100.0 2.4E-40 8.4E-45 338.2 17.6 267 415-687 2-282 (292)
88 3lzb_A Epidermal growth factor 100.0 2.8E-41 9.4E-46 350.6 10.6 259 414-695 14-279 (327)
89 2bdw_A Hypothetical protein K1 100.0 2.9E-40 1E-44 347.2 18.5 252 414-688 28-285 (362)
90 1opk_A P150, C-ABL, proto-onco 100.0 3.7E-41 1.3E-45 368.9 11.9 255 414-692 219-476 (495)
91 3p1a_A MYT1 kinase, membrane-a 100.0 2.1E-40 7.2E-45 341.6 16.6 244 415-687 57-304 (311)
92 3gxj_A TGF-beta receptor type- 100.0 4.3E-42 1.5E-46 353.4 4.0 268 414-695 2-298 (303)
93 1p4o_A Insulin-like growth fac 100.0 9.8E-42 3.3E-46 353.9 6.7 271 408-700 18-305 (322)
94 1mqb_A Ephrin type-A receptor 100.0 1.3E-40 4.5E-45 346.5 15.1 261 415-697 44-312 (333)
95 1u59_A Tyrosine-protein kinase 100.0 1.2E-40 4.1E-45 339.6 14.5 262 415-699 9-277 (287)
96 3kmu_A ILK, integrin-linked ki 100.0 6.9E-41 2.4E-45 338.4 12.5 252 414-694 9-270 (271)
97 3c1x_A Hepatocyte growth facto 100.0 4E-41 1.4E-45 354.8 11.2 262 416-699 90-360 (373)
98 4fr4_A YANK1, serine/threonine 100.0 3.2E-40 1.1E-44 347.5 17.9 249 414-686 14-270 (384)
99 2x4f_A Myosin light chain kina 100.0 2E-40 6.7E-45 349.8 16.2 246 420-687 94-342 (373)
100 4dc2_A Protein kinase C IOTA t 100.0 3.5E-40 1.2E-44 348.5 18.1 249 414-682 51-307 (396)
101 1fot_A TPK1 delta, CAMP-depend 100.0 2.6E-40 8.7E-45 340.9 16.6 245 414-687 5-258 (318)
102 3f66_A Hepatocyte growth facto 100.0 1.4E-40 4.6E-45 341.3 13.9 263 414-698 24-295 (298)
103 3g2f_A Bone morphogenetic prot 100.0 6.9E-41 2.4E-45 349.8 11.7 273 414-699 12-323 (336)
104 3brb_A Proto-oncogene tyrosine 100.0 1.4E-40 4.9E-45 343.6 13.9 266 411-698 30-312 (313)
105 3gni_B Strad alpha; kinase fol 100.0 4.3E-40 1.5E-44 350.7 18.0 270 414-687 24-333 (389)
106 3dbq_A Dual specificity protei 100.0 2.4E-40 8.3E-45 346.2 15.7 252 414-688 8-274 (343)
107 3cc6_A Protein tyrosine kinase 100.0 1.7E-40 5.9E-45 337.4 14.1 261 413-697 10-276 (281)
108 2w4o_A Calcium/calmodulin-depe 100.0 2.4E-40 8.3E-45 346.4 15.6 251 413-687 51-305 (349)
109 3qd2_B Eukaryotic translation 100.0 3E-40 1E-44 344.4 16.1 250 414-687 5-325 (332)
110 1fmk_A C-SRC, P60-SRC, tyrosin 100.0 3.4E-41 1.2E-45 365.3 9.3 258 413-695 182-441 (452)
111 2zv2_A Calcium/calmodulin-depe 100.0 1.3E-40 4.5E-45 341.3 13.1 249 414-687 12-292 (298)
112 1xjd_A Protein kinase C, theta 100.0 1.2E-40 4.2E-45 346.7 13.0 250 411-686 13-268 (345)
113 2yex_A Serine/threonine-protei 100.0 3.5E-40 1.2E-44 334.2 16.0 253 414-687 6-261 (276)
114 3pls_A Macrophage-stimulating 100.0 2E-40 6.7E-45 340.1 14.3 263 416-699 22-292 (298)
115 4fvq_A Tyrosine-protein kinase 100.0 4.4E-41 1.5E-45 343.3 9.3 253 414-695 7-276 (289)
116 4hgt_A Casein kinase I isoform 100.0 8.6E-40 3E-44 335.0 18.8 266 413-698 7-284 (296)
117 2ozo_A Tyrosine-protein kinase 100.0 1.3E-40 4.6E-45 373.0 13.8 257 422-701 343-605 (613)
118 3kfa_A Tyrosine-protein kinase 100.0 7.8E-41 2.7E-45 341.3 10.6 259 413-695 11-272 (288)
119 2vd5_A DMPK protein; serine/th 100.0 1.6E-40 5.6E-45 353.2 13.4 262 406-687 52-327 (412)
120 3v8s_A RHO-associated protein 100.0 1.2E-40 4.1E-45 354.0 12.2 258 408-687 62-329 (410)
121 1rdq_E PKA C-alpha, CAMP-depen 100.0 3.8E-40 1.3E-44 344.2 15.6 244 415-687 41-293 (350)
122 2pmi_A Negative RE, cyclin-dep 100.0 5.8E-40 2E-44 339.3 16.8 267 414-687 4-293 (317)
123 3uc3_A Serine/threonine-protei 100.0 3.3E-40 1.1E-44 346.8 15.2 253 414-688 19-275 (361)
124 3a8x_A Protein kinase C IOTA t 100.0 9.8E-40 3.3E-44 340.6 18.5 248 415-682 9-264 (345)
125 2zmd_A Dual specificity protei 100.0 6.5E-40 2.2E-44 348.2 17.2 251 415-688 56-321 (390)
126 1qpc_A LCK kinase; alpha beta 100.0 1.1E-40 3.6E-45 338.6 10.6 260 414-698 12-273 (279)
127 3uzp_A CKI-delta, CKID, casein 100.0 1.7E-39 5.9E-44 332.7 19.6 265 414-698 8-284 (296)
128 3e7e_A HBUB1, BUB1A, mitotic c 100.0 8.9E-40 3E-44 345.1 17.9 254 413-696 63-341 (365)
129 3cok_A Serine/threonine-protei 100.0 4.3E-40 1.5E-44 334.0 14.9 249 414-687 10-262 (278)
130 2wqm_A Serine/threonine-protei 100.0 1.3E-39 4.3E-44 336.1 18.6 263 414-697 31-300 (310)
131 2buj_A Serine/threonine-protei 100.0 3.5E-40 1.2E-44 341.4 14.5 264 414-697 28-309 (317)
132 2v62_A Serine/threonine-protei 100.0 2.2E-40 7.5E-45 346.8 12.1 266 414-693 36-327 (345)
133 3a62_A Ribosomal protein S6 ki 100.0 5.5E-40 1.9E-44 340.7 14.9 248 414-687 16-276 (327)
134 2yfx_A Tyrosine-protein kinase 100.0 2.5E-40 8.7E-45 343.9 12.0 260 414-695 29-305 (327)
135 3f3z_A Calcium/calmodulin-depe 100.0 1.7E-39 5.8E-44 329.3 17.8 250 414-687 8-261 (277)
136 3fdn_A Serine/threonine-protei 100.0 7.4E-40 2.5E-44 332.4 15.2 248 413-688 7-258 (279)
137 3hko_A Calcium/calmodulin-depe 100.0 8.3E-40 2.8E-44 342.9 15.9 260 409-687 20-330 (345)
138 4eut_A Serine/threonine-protei 100.0 6.7E-40 2.3E-44 349.5 15.3 276 414-695 8-310 (396)
139 3v47_A TOLL-like receptor 5B a 100.0 4.6E-39 1.6E-43 350.7 22.0 325 5-337 29-406 (455)
140 2y94_A 5'-AMP-activated protei 100.0 8.5E-40 2.9E-44 353.7 15.9 247 414-687 15-266 (476)
141 1u5q_A Serine/threonine protei 100.0 4.3E-40 1.5E-44 344.0 13.1 246 415-688 54-306 (348)
142 3llt_A Serine/threonine kinase 100.0 9.6E-40 3.3E-44 344.4 15.9 209 402-620 22-262 (360)
143 2i0e_A Protein kinase C-beta I 100.0 7.4E-40 2.5E-44 341.9 14.8 244 413-682 18-266 (353)
144 2h34_A Serine/threonine-protei 100.0 7.7E-40 2.6E-44 337.2 14.7 264 413-698 32-300 (309)
145 2eue_A Carbon catabolite derep 100.0 6.2E-40 2.1E-44 332.2 13.8 245 415-687 13-262 (275)
146 3kk8_A Calcium/calmodulin depe 100.0 4.4E-39 1.5E-43 327.6 20.0 251 414-687 5-261 (284)
147 4agu_A Cyclin-dependent kinase 100.0 2.4E-39 8.3E-44 334.1 18.1 265 415-687 3-284 (311)
148 3ork_A Serine/threonine protei 100.0 1.4E-40 4.7E-45 343.2 8.7 259 414-692 11-279 (311)
149 3g33_A Cell division protein k 100.0 2.3E-39 7.7E-44 333.8 17.6 267 413-687 7-296 (308)
150 2ac3_A MAP kinase-interacting 100.0 8.2E-40 2.8E-44 338.5 14.3 264 414-687 11-295 (316)
151 3mtl_A Cell division protein k 100.0 4.5E-40 1.5E-44 341.2 12.3 266 415-687 2-281 (324)
152 1xbb_A Tyrosine-protein kinase 100.0 7.1E-40 2.4E-44 334.6 13.6 262 414-699 15-284 (291)
153 2jii_A Serine/threonine-protei 100.0 4E-40 1.4E-44 345.9 11.9 266 414-697 41-339 (352)
154 3oz6_A Mitogen-activated prote 100.0 1.4E-39 4.9E-44 346.4 16.3 270 412-688 6-329 (388)
155 3dls_A PAS domain-containing s 100.0 5.5E-40 1.9E-44 341.6 12.5 243 413-688 22-275 (335)
156 2a2a_A Death-associated protei 100.0 2.3E-39 7.9E-44 335.6 17.1 251 414-687 11-272 (321)
157 2a19_B Interferon-induced, dou 100.0 7.2E-40 2.5E-44 333.4 12.7 252 413-698 9-278 (284)
158 3kn6_A Ribosomal protein S6 ki 100.0 4.4E-39 1.5E-43 333.5 18.7 247 420-686 16-269 (325)
159 3is5_A Calcium-dependent prote 100.0 9E-40 3.1E-44 332.6 13.2 249 415-687 22-278 (285)
160 1fvr_A Tyrosine-protein kinase 100.0 6.9E-40 2.3E-44 340.6 12.5 259 415-698 25-304 (327)
161 1byg_A CSK, protein (C-termina 100.0 3.7E-40 1.3E-44 334.4 10.2 253 414-696 20-275 (278)
162 2id5_A Lingo-1, leucine rich r 100.0 3.5E-38 1.2E-42 345.7 26.0 307 5-319 31-337 (477)
163 2acx_A G protein-coupled recep 100.0 2.5E-39 8.6E-44 354.3 16.8 250 414-687 183-444 (576)
164 4fl3_A Tyrosine-protein kinase 100.0 9E-40 3.1E-44 367.0 13.6 253 421-697 375-634 (635)
165 2r5t_A Serine/threonine-protei 100.0 6.7E-40 2.3E-44 344.7 11.2 249 414-688 37-290 (373)
166 2h8h_A Proto-oncogene tyrosine 100.0 2.3E-40 7.9E-45 365.9 7.9 257 413-694 265-523 (535)
167 3bhy_A Death-associated protei 100.0 4.1E-39 1.4E-43 327.7 16.4 258 415-695 5-275 (283)
168 4ejn_A RAC-alpha serine/threon 100.0 5.5E-40 1.9E-44 355.9 10.5 249 414-687 147-404 (446)
169 1nxk_A MAP kinase-activated pr 100.0 8.5E-39 2.9E-43 340.6 19.5 249 415-688 61-322 (400)
170 1u46_A ACK-1, activated CDC42 100.0 6.3E-40 2.1E-44 335.1 10.2 260 414-695 17-285 (291)
171 3ll6_A Cyclin G-associated kin 100.0 3E-39 1E-43 337.5 15.3 260 414-697 27-311 (337)
172 3byv_A Rhoptry kinase; malaria 100.0 3E-40 1E-44 350.0 7.7 250 414-697 72-371 (377)
173 3i6u_A CDS1, serine/threonine- 100.0 3.7E-39 1.3E-43 345.8 16.1 253 412-687 132-399 (419)
174 4aaa_A Cyclin-dependent kinase 100.0 3E-39 1E-43 336.3 14.9 267 414-687 24-306 (331)
175 3sv0_A Casein kinase I-like; t 100.0 1.3E-38 4.5E-43 345.0 20.2 263 414-696 6-280 (483)
176 2rku_A Serine/threonine-protei 100.0 4.1E-39 1.4E-43 329.5 15.4 248 414-687 14-265 (294)
177 2vgo_A Serine/threonine-protei 100.0 4.6E-39 1.6E-43 327.4 15.2 246 414-687 13-262 (284)
178 1ua2_A CAK, cell division prot 100.0 3.3E-39 1.1E-43 338.0 14.5 271 410-687 5-291 (346)
179 2jam_A Calcium/calmodulin-depe 100.0 9.2E-39 3.1E-43 328.6 17.5 250 414-687 8-261 (304)
180 3c4z_A Rhodopsin kinase; Ser/T 100.0 7.7E-39 2.6E-43 349.9 17.7 248 414-682 184-438 (543)
181 2y7j_A Phosphorylase B kinase 100.0 1.8E-38 6.3E-43 334.3 19.9 255 410-687 89-359 (365)
182 2j7t_A Serine/threonine-protei 100.0 1.3E-39 4.4E-44 334.7 10.8 253 413-687 17-275 (302)
183 3com_A Serine/threonine-protei 100.0 7.8E-39 2.7E-43 330.8 16.5 252 412-687 26-278 (314)
184 2qr7_A Ribosomal protein S6 ki 100.0 3.4E-39 1.2E-43 336.1 13.9 251 414-687 21-277 (342)
185 2owb_A Serine/threonine-protei 100.0 3.8E-39 1.3E-43 335.9 14.1 248 414-687 40-291 (335)
186 3ttj_A Mitogen-activated prote 100.0 5.4E-39 1.9E-43 348.2 15.4 261 414-687 61-355 (464)
187 1t4h_A Serine/threonine-protei 100.0 1.3E-38 4.5E-43 325.1 17.4 249 415-687 26-282 (290)
188 2clq_A Mitogen-activated prote 100.0 1.8E-38 6.1E-43 325.0 18.2 251 415-687 22-278 (295)
189 3eqc_A Dual specificity mitoge 100.0 2E-39 6.7E-44 342.0 11.2 266 414-687 32-324 (360)
190 3rp9_A Mitogen-activated prote 100.0 7.3E-39 2.5E-43 348.7 15.9 195 414-613 52-280 (458)
191 3q60_A ROP5B; pseudokinase, tr 100.0 1.4E-39 4.8E-44 344.3 9.8 262 414-695 61-362 (371)
192 3a7i_A MST3 kinase, serine/thr 100.0 7E-39 2.4E-43 329.3 14.8 249 414-688 21-271 (303)
193 3gbz_A Kinase, CMGC CDK; ssgci 100.0 2.9E-39 9.9E-44 335.9 11.9 268 412-687 31-318 (329)
194 3mwu_A Calmodulin-domain prote 100.0 1.9E-38 6.5E-43 347.7 18.7 251 413-687 20-276 (486)
195 3mi9_A Cell division protein k 100.0 2.4E-38 8E-43 332.5 18.4 269 414-687 16-311 (351)
196 3pg1_A Mitogen-activated prote 100.0 9.5E-39 3.3E-43 337.1 15.5 274 406-687 13-316 (362)
197 2h6d_A 5'-AMP-activated protei 100.0 9.7E-39 3.3E-43 323.6 14.9 247 414-687 10-261 (276)
198 1x8b_A WEE1HU, WEE1-like prote 100.0 8.4E-39 2.9E-43 326.3 14.0 244 413-687 9-279 (289)
199 3nsz_A CK II alpha, casein kin 100.0 1E-38 3.4E-43 332.5 14.8 260 415-687 36-319 (330)
200 3lm5_A Serine/threonine-protei 100.0 5.3E-39 1.8E-43 333.7 12.6 261 405-687 18-287 (327)
201 3fme_A Dual specificity mitoge 100.0 4.8E-39 1.6E-43 328.4 12.1 251 414-687 6-266 (290)
202 2pml_X PFPK7, Ser/Thr protein 100.0 4.2E-39 1.4E-43 338.0 11.9 264 414-687 30-322 (348)
203 1vzo_A Ribosomal protein S6 ki 100.0 6.2E-39 2.1E-43 336.7 13.0 254 414-688 53-322 (355)
204 2vwi_A Serine/threonine-protei 100.0 2.7E-39 9.1E-44 332.5 9.8 263 411-687 11-287 (303)
205 2w5a_A Serine/threonine-protei 100.0 2.8E-39 9.6E-44 328.1 9.5 255 414-689 5-269 (279)
206 3n9x_A Phosphotransferase; mal 100.0 1.9E-38 6.4E-43 342.0 16.3 200 414-618 25-253 (432)
207 2wtk_C Serine/threonine-protei 100.0 2.1E-38 7.3E-43 326.1 15.8 251 414-688 4-264 (305)
208 2j0j_A Focal adhesion kinase 1 100.0 7.4E-39 2.5E-43 361.0 13.3 259 413-695 388-652 (656)
209 3t6q_A CD180 antigen; protein- 100.0 8.9E-37 3E-41 345.1 30.3 325 3-336 54-435 (606)
210 3eb0_A Putative uncharacterize 100.0 1.8E-38 6.3E-43 337.1 15.4 272 411-694 3-330 (383)
211 3lij_A Calcium/calmodulin depe 100.0 3.1E-38 1.1E-42 346.6 17.7 251 414-688 36-292 (494)
212 1cm8_A Phosphorylated MAP kina 100.0 2.3E-38 7.9E-43 333.6 16.0 262 414-687 24-307 (367)
213 3q5i_A Protein kinase; CDPK, m 100.0 4.6E-38 1.6E-42 346.1 19.0 251 413-687 34-301 (504)
214 2r3i_A Cell division protein k 100.0 2.2E-38 7.5E-43 325.0 15.4 266 415-687 3-283 (299)
215 3nyv_A Calmodulin-domain prote 100.0 1.4E-38 4.6E-43 349.1 14.6 250 414-687 25-281 (484)
216 3an0_A Dual specificity mitoge 100.0 9.6E-39 3.3E-43 334.0 12.8 252 413-687 49-310 (340)
217 2ycf_A Serine/threonine-protei 100.0 2.8E-38 9.6E-43 327.7 16.0 252 413-687 8-274 (322)
218 3cek_A Dual specificity protei 100.0 9.6E-39 3.3E-43 329.9 12.4 256 409-687 22-292 (313)
219 3e3p_A Protein kinase, putativ 100.0 7.6E-38 2.6E-42 330.0 19.4 273 408-687 16-314 (360)
220 3kvw_A DYRK2, dual specificity 100.0 3E-38 1E-42 339.6 16.4 198 413-620 95-302 (429)
221 2vx3_A Dual specificity tyrosi 100.0 8.8E-38 3E-42 331.7 19.8 201 412-620 51-261 (382)
222 2x7f_A TRAF2 and NCK-interacti 100.0 6.6E-39 2.3E-43 333.2 10.4 259 405-687 14-286 (326)
223 3qyz_A Mitogen-activated prote 100.0 5.4E-38 1.9E-42 331.2 17.5 268 413-687 25-313 (364)
224 2xrw_A Mitogen-activated prote 100.0 8.6E-38 2.9E-42 330.3 19.0 260 414-687 24-318 (371)
225 2y4i_B KSR2, HKSR2, kinase sup 100.0 1.5E-39 5E-44 337.1 5.1 262 412-697 30-305 (319)
226 3pfq_A PKC-B, PKC-beta, protei 100.0 2.6E-38 8.8E-43 357.7 15.7 245 412-682 338-587 (674)
227 1phk_A Phosphorylase kinase; g 100.0 1E-37 3.5E-42 319.9 18.3 253 412-687 14-283 (298)
228 3v47_A TOLL-like receptor 5B a 100.0 2.5E-37 8.5E-42 337.0 22.3 321 9-341 13-386 (455)
229 1zy4_A Serine/threonine-protei 100.0 3.8E-38 1.3E-42 323.9 14.4 252 414-687 5-283 (303)
230 1wak_A Serine/threonine-protei 100.0 3.7E-38 1.3E-42 337.1 14.7 264 414-687 36-391 (397)
231 1z57_A Dual specificity protei 100.0 2.2E-37 7.4E-42 323.6 19.1 263 414-687 13-328 (339)
232 4e7w_A Glycogen synthase kinas 100.0 4.3E-38 1.5E-42 334.9 13.8 262 415-687 40-321 (394)
233 3vq2_A TLR4, TOLL-like recepto 100.0 7.8E-37 2.7E-41 345.5 25.0 181 156-337 348-532 (606)
234 2fst_X Mitogen-activated prote 100.0 3.2E-38 1.1E-42 332.1 12.2 262 414-687 28-311 (367)
235 2i6l_A Mitogen-activated prote 100.0 6.2E-38 2.1E-42 325.0 14.2 266 414-687 10-305 (320)
236 1blx_A Cyclin-dependent kinase 100.0 1.4E-37 4.8E-42 323.2 16.9 267 413-687 9-296 (326)
237 4eco_A Uncharacterized protein 100.0 3.7E-37 1.3E-41 348.0 21.3 331 3-342 203-582 (636)
238 1j1b_A Glycogen synthase kinas 100.0 6.4E-38 2.2E-42 336.3 14.0 261 415-687 54-336 (420)
239 4eco_A Uncharacterized protein 100.0 6.9E-37 2.4E-41 345.8 23.2 320 4-338 247-599 (636)
240 2id5_A Lingo-1, leucine rich r 100.0 2.4E-36 8.1E-41 331.1 26.5 320 8-338 13-332 (477)
241 2b9h_A MAP kinase FUS3, mitoge 100.0 1.6E-37 5.4E-42 326.7 16.3 267 414-687 10-305 (353)
242 2wei_A Calmodulin-domain prote 100.0 2.3E-37 7.9E-42 315.3 16.2 252 412-687 19-276 (287)
243 3t6q_A CD180 antigen; protein- 100.0 3.9E-36 1.3E-40 339.9 27.9 323 6-337 33-411 (606)
244 3vq2_A TLR4, TOLL-like recepto 100.0 1.3E-36 4.3E-41 343.8 23.8 160 178-338 346-509 (606)
245 3rgf_A Cyclin-dependent kinase 100.0 7.9E-38 2.7E-42 334.8 12.2 266 416-687 21-333 (405)
246 4exu_A Mitogen-activated prote 100.0 2.6E-37 9E-42 326.5 16.1 261 414-687 41-323 (371)
247 3fhr_A MAP kinase-activated pr 100.0 2.3E-37 7.8E-42 322.4 14.3 252 413-687 26-287 (336)
248 2rio_A Serine/threonine-protei 100.0 2.3E-37 7.9E-42 333.4 14.8 250 416-687 16-295 (434)
249 3j0a_A TOLL-like receptor 5; m 100.0 8.4E-36 2.9E-40 348.5 28.1 315 3-325 70-549 (844)
250 3aln_A Dual specificity mitoge 100.0 1.4E-37 4.7E-42 323.3 11.5 253 414-687 21-285 (327)
251 2dyl_A Dual specificity mitoge 100.0 1.7E-37 5.8E-42 321.4 12.0 252 414-687 24-283 (318)
252 2eu9_A Dual specificity protei 100.0 9.9E-37 3.4E-41 320.9 18.0 262 414-687 18-333 (355)
253 3a99_A Proto-oncogene serine/t 100.0 8.3E-38 2.8E-42 323.6 9.3 241 413-687 41-293 (320)
254 3p23_A Serine/threonine-protei 100.0 2.1E-37 7.3E-42 332.5 12.4 249 415-687 24-283 (432)
255 2z63_A TOLL-like receptor 4, v 100.0 5.1E-36 1.7E-40 336.4 24.0 136 3-146 49-189 (570)
256 2iwi_A Serine/threonine-protei 100.0 1.4E-37 4.8E-42 321.0 10.1 244 410-687 26-283 (312)
257 1q8y_A SR protein kinase; tran 100.0 3.2E-37 1.1E-41 327.0 12.6 264 414-687 18-333 (373)
258 2z7x_B TOLL-like receptor 1, v 100.0 8.8E-36 3E-40 330.4 24.6 314 6-338 21-456 (520)
259 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.9E-35 6.5E-40 330.5 27.0 315 5-337 51-508 (562)
260 3coi_A Mitogen-activated prote 100.0 5.9E-37 2E-41 322.0 13.7 261 414-687 23-305 (353)
261 3qa8_A MGC80376 protein; kinas 100.0 6.1E-37 2.1E-41 338.3 11.9 262 414-685 13-295 (676)
262 4ecn_A Leucine-rich repeat pro 100.0 2.2E-35 7.4E-40 338.9 24.8 331 3-342 445-822 (876)
263 1ziw_A TOLL-like receptor 3; i 100.0 7.8E-35 2.7E-39 333.7 28.7 329 8-338 250-621 (680)
264 3j0a_A TOLL-like receptor 5; m 100.0 1.1E-34 3.8E-39 339.0 29.9 305 4-316 22-376 (844)
265 4ecn_A Leucine-rich repeat pro 100.0 2.4E-35 8.3E-40 338.5 23.5 318 4-338 489-839 (876)
266 3uqc_A Probable conserved tran 100.0 7.6E-36 2.6E-40 302.9 16.0 232 415-695 31-266 (286)
267 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.8E-35 2E-39 326.5 23.5 303 3-320 73-515 (562)
268 2pzi_A Probable serine/threoni 100.0 4.9E-36 1.7E-40 341.6 15.0 242 414-695 79-329 (681)
269 2z63_A TOLL-like receptor 4, v 100.0 4.7E-35 1.6E-39 328.6 22.4 322 6-337 28-505 (570)
270 2z7x_B TOLL-like receptor 1, v 100.0 1.3E-34 4.3E-39 321.1 25.5 310 9-339 3-434 (520)
271 2z81_A CD282 antigen, TOLL-lik 100.0 4.8E-35 1.6E-39 326.9 21.4 154 180-337 332-508 (549)
272 1ziw_A TOLL-like receptor 3; i 100.0 8.4E-34 2.9E-38 325.1 30.8 325 5-336 72-464 (680)
273 1xku_A Decorin; proteoglycan, 100.0 1.1E-33 3.8E-38 294.1 28.6 289 7-313 32-330 (330)
274 3o6n_A APL1; leucine-rich repe 100.0 2.8E-34 9.7E-39 305.9 24.1 308 4-337 43-350 (390)
275 4fmz_A Internalin; leucine ric 100.0 7E-34 2.4E-38 298.0 26.6 303 4-337 42-344 (347)
276 2ft3_A Biglycan; proteoglycan, 100.0 6.2E-34 2.1E-38 296.2 25.9 288 7-313 34-331 (332)
277 3dzo_A Rhoptry kinase domain; 100.0 6.1E-36 2.1E-40 320.2 8.8 240 414-687 77-363 (413)
278 4g8a_A TOLL-like receptor 4; l 100.0 1.5E-33 5.2E-38 320.6 28.4 325 6-338 52-579 (635)
279 3o6n_A APL1; leucine-rich repe 100.0 5.5E-34 1.9E-38 303.7 22.9 288 4-317 67-354 (390)
280 3m2w_A MAP kinase-activated pr 100.0 1.1E-34 3.9E-39 297.1 16.6 230 414-687 16-256 (299)
281 3oja_B Anopheles plasmodium-re 100.0 8.8E-34 3E-38 318.7 24.4 308 4-337 49-356 (597)
282 3oja_B Anopheles plasmodium-re 100.0 5.8E-34 2E-38 320.1 22.5 289 4-318 73-361 (597)
283 4fmz_A Internalin; leucine ric 100.0 3E-33 1E-37 293.2 24.6 284 3-315 63-346 (347)
284 2z81_A CD282 antigen, TOLL-lik 100.0 4.3E-34 1.5E-38 319.1 19.1 277 5-291 25-423 (549)
285 1o6v_A Internalin A; bacterial 100.0 4E-33 1.4E-37 304.1 26.1 303 4-338 66-387 (466)
286 2vuw_A Serine/threonine-protei 100.0 1.7E-35 5.9E-40 308.6 2.8 243 414-686 19-329 (336)
287 1ogq_A PGIP-2, polygalacturona 100.0 9.1E-34 3.1E-38 291.8 15.4 251 54-313 50-302 (313)
288 1ogq_A PGIP-2, polygalacturona 100.0 2.8E-33 9.7E-38 288.1 17.0 252 30-292 50-306 (313)
289 4g8a_A TOLL-like receptor 4; l 100.0 5.8E-32 2E-36 307.5 28.3 310 2-319 72-584 (635)
290 1o6v_A Internalin A; bacterial 100.0 5.9E-32 2E-36 294.8 26.4 292 3-317 87-390 (466)
291 1xku_A Decorin; proteoglycan, 100.0 1.1E-31 3.7E-36 279.1 26.9 270 5-289 51-330 (330)
292 2ft3_A Biglycan; proteoglycan, 100.0 8.5E-32 2.9E-36 280.1 23.8 269 5-289 53-331 (332)
293 3bz5_A Internalin-J, INLJ; leu 100.0 2.4E-31 8.4E-36 287.6 26.8 296 4-337 40-350 (457)
294 2z66_A Variable lymphocyte rec 100.0 1.1E-31 3.6E-36 276.1 18.2 283 9-325 10-297 (306)
295 3bz5_A Internalin-J, INLJ; leu 100.0 6.8E-31 2.3E-35 284.1 24.2 278 3-316 61-353 (457)
296 2z80_A TOLL-like receptor 2, v 100.0 1.3E-30 4.4E-35 273.6 16.1 281 6-319 31-318 (353)
297 1jl5_A Outer protein YOPM; leu 100.0 5.5E-29 1.9E-33 268.9 27.0 276 4-325 89-382 (454)
298 2z66_A Variable lymphocyte rec 100.0 1.1E-29 3.8E-34 261.0 19.6 252 33-318 10-264 (306)
299 2z80_A TOLL-like receptor 2, v 100.0 2.2E-30 7.6E-35 271.8 13.2 253 86-339 53-314 (353)
300 4fcg_A Uncharacterized protein 100.0 2.2E-29 7.6E-34 260.5 19.6 233 6-266 81-313 (328)
301 3zyj_A Leucine-rich repeat-con 100.0 8.3E-29 2.8E-33 267.8 24.9 247 8-291 45-292 (440)
302 1ozn_A Reticulon 4 receptor; N 100.0 1.3E-29 4.5E-34 257.5 17.2 268 9-312 14-284 (285)
303 1z7x_W Ribonuclease inhibitor; 100.0 8.1E-33 2.8E-37 301.9 -7.4 331 4-337 26-409 (461)
304 3zyi_A Leucine-rich repeat-con 100.0 1.2E-28 4E-33 267.6 24.7 247 8-291 56-303 (452)
305 3o53_A Protein LRIM1, AGAP0063 100.0 6.2E-31 2.1E-35 271.3 5.6 268 7-320 11-281 (317)
306 1ozn_A Reticulon 4 receptor; N 100.0 6.6E-29 2.3E-33 252.3 19.4 237 86-324 33-270 (285)
307 1jl5_A Outer protein YOPM; leu 100.0 6.7E-29 2.3E-33 268.2 19.7 270 4-316 9-291 (454)
308 3zyi_A Leucine-rich repeat-con 100.0 2E-28 6.7E-33 265.9 23.1 252 55-319 55-307 (452)
309 4fcg_A Uncharacterized protein 100.0 1E-28 3.4E-33 255.6 19.6 225 85-315 81-314 (328)
310 3zyj_A Leucine-rich repeat-con 100.0 2.5E-28 8.7E-33 264.0 23.3 250 56-318 45-295 (440)
311 3g06_A SSPH2 (leucine-rich rep 100.0 4.3E-28 1.5E-32 269.7 25.6 268 7-326 41-308 (622)
312 1z7x_W Ribonuclease inhibitor; 100.0 4.6E-31 1.6E-35 288.0 -2.5 310 4-317 54-413 (461)
313 1wwl_A Monocyte differentiatio 100.0 9.3E-30 3.2E-34 261.9 4.9 251 49-317 38-311 (312)
314 1wwl_A Monocyte differentiatio 100.0 6.2E-29 2.1E-33 255.8 8.9 257 25-292 38-310 (312)
315 3o53_A Protein LRIM1, AGAP0063 100.0 3.5E-29 1.2E-33 258.2 6.1 246 4-295 32-280 (317)
316 3oja_A Leucine-rich immune mol 100.0 1E-28 3.5E-33 269.5 9.7 236 29-310 33-270 (487)
317 4azs_A Methyltransferase WBDD; 99.9 7E-29 2.4E-33 274.4 5.7 185 422-616 241-437 (569)
318 3oja_A Leucine-rich immune mol 99.9 4.6E-28 1.6E-32 264.3 9.6 237 4-286 32-270 (487)
319 3g06_A SSPH2 (leucine-rich rep 99.9 6.1E-26 2.1E-30 252.4 23.5 250 5-303 60-309 (622)
320 2z62_A TOLL-like receptor 4, v 99.9 4.1E-26 1.4E-30 230.5 18.6 209 111-320 29-242 (276)
321 3rfs_A Internalin B, repeat mo 99.9 2.9E-26 9.8E-31 230.9 13.8 163 130-323 81-243 (272)
322 2z62_A TOLL-like receptor 4, v 99.9 1.8E-25 6.2E-30 225.8 19.6 224 9-268 10-238 (276)
323 2o6q_A Variable lymphocyte rec 99.9 6.8E-25 2.3E-29 220.6 21.9 184 135-318 38-221 (270)
324 2o6q_A Variable lymphocyte rec 99.9 1.6E-24 5.3E-29 218.0 22.6 203 7-244 17-219 (270)
325 3rfs_A Internalin B, repeat mo 99.9 2.3E-25 7.9E-30 224.2 15.9 203 112-320 21-223 (272)
326 1p9a_G Platelet glycoprotein I 99.9 2.9E-24 1E-28 217.8 22.1 132 134-267 77-208 (290)
327 3goz_A Leucine-rich repeat-con 99.9 3.2E-26 1.1E-30 240.7 7.3 231 10-243 2-266 (362)
328 1p9a_G Platelet glycoprotein I 99.9 2.1E-24 7.2E-29 218.9 20.3 203 81-291 6-208 (290)
329 3en9_A Glycoprotease, O-sialog 99.9 5.5E-26 1.9E-30 249.9 6.4 185 419-618 340-539 (540)
330 2ca6_A RAN GTPase-activating p 99.9 3.8E-27 1.3E-31 250.4 -3.1 252 47-319 25-320 (386)
331 3goz_A Leucine-rich repeat-con 99.9 1.4E-25 4.9E-30 235.7 7.4 256 34-292 2-298 (362)
332 4glp_A Monocyte differentiatio 99.9 2.6E-24 8.9E-29 221.1 12.8 226 85-316 64-308 (310)
333 2ca6_A RAN GTPase-activating p 99.9 6.1E-26 2.1E-30 241.1 0.3 268 21-309 23-337 (386)
334 2xwt_C Thyrotropin receptor; s 99.9 7.7E-24 2.6E-28 208.8 13.3 197 110-312 31-236 (239)
335 3m19_A Variable lymphocyte rec 99.9 5.1E-23 1.8E-27 204.5 19.3 179 136-317 16-194 (251)
336 4glp_A Monocyte differentiatio 99.9 6.2E-24 2.1E-28 218.2 11.6 227 55-292 65-308 (310)
337 1h6u_A Internalin H; cell adhe 99.9 4.9E-23 1.7E-27 211.0 17.9 194 26-267 37-230 (308)
338 2ast_B S-phase kinase-associat 99.9 1.5E-24 5E-29 226.0 6.6 254 8-300 49-315 (336)
339 2xwt_C Thyrotropin receptor; s 99.9 3.1E-23 1.1E-27 204.5 14.7 187 18-219 23-218 (239)
340 2ast_B S-phase kinase-associat 99.9 1.3E-24 4.6E-29 226.2 4.9 234 85-324 70-315 (336)
341 1h6u_A Internalin H; cell adhe 99.9 7.8E-23 2.7E-27 209.5 17.5 193 4-244 39-231 (308)
342 3ogk_B Coronatine-insensitive 99.9 2.2E-25 7.6E-30 251.0 -2.8 311 5-317 163-528 (592)
343 3m19_A Variable lymphocyte rec 99.9 2.6E-22 8.8E-27 199.4 19.5 160 134-293 35-194 (251)
344 4ay9_X Follicle-stimulating ho 99.9 2.3E-22 8E-27 210.1 14.3 240 9-288 12-256 (350)
345 3ogk_B Coronatine-insensitive 99.9 7.4E-24 2.5E-28 238.6 1.1 308 4-312 190-548 (592)
346 2p1m_B Transport inhibitor res 99.9 3.1E-24 1.1E-28 241.8 -3.0 186 4-192 103-324 (594)
347 4ay9_X Follicle-stimulating ho 99.9 1.7E-21 5.7E-26 203.6 17.0 242 33-313 12-257 (350)
348 2o6s_A Variable lymphocyte rec 99.9 2.8E-21 9.6E-26 186.1 16.0 157 159-322 29-185 (208)
349 1zar_A RIO2 kinase; serine kin 99.9 1.2E-22 4.3E-27 204.4 6.7 151 409-590 84-252 (282)
350 2o6s_A Variable lymphocyte rec 99.9 5.3E-21 1.8E-25 184.1 17.2 182 112-303 9-190 (208)
351 2p1m_B Transport inhibitor res 99.9 1.8E-23 6.1E-28 235.6 -1.2 327 4-337 128-517 (594)
352 3cvr_A Invasion plasmid antige 99.8 4.6E-21 1.6E-25 210.5 15.3 189 86-303 60-255 (571)
353 3cvr_A Invasion plasmid antige 99.8 5.7E-21 2E-25 209.7 14.6 188 111-326 60-254 (571)
354 1m9s_A Internalin B; cell inva 99.8 6E-21 2E-25 212.1 11.6 189 32-244 23-211 (605)
355 1m9s_A Internalin B; cell inva 99.8 4E-20 1.4E-24 205.4 17.5 198 8-229 23-220 (605)
356 1h6t_A Internalin B; cell adhe 99.8 3.6E-20 1.2E-24 187.8 14.8 172 131-316 43-214 (291)
357 1h6t_A Internalin B; cell adhe 99.8 1E-19 3.6E-24 184.5 16.9 168 111-292 47-214 (291)
358 2v9t_B SLIT homolog 2 protein 99.8 8.2E-20 2.8E-24 177.0 15.2 152 137-291 14-165 (220)
359 2v70_A SLIT-2, SLIT homolog 2 99.8 6.8E-20 2.3E-24 177.6 14.3 134 184-317 34-168 (220)
360 2xot_A Amphoterin-induced prot 99.8 3E-20 1E-24 194.8 12.4 157 160-316 41-203 (361)
361 2v9t_B SLIT homolog 2 protein 99.8 2E-19 7E-24 174.2 16.3 154 161-317 14-167 (220)
362 3e6j_A Variable lymphocyte rec 99.8 2.4E-19 8.3E-24 174.9 16.2 151 137-291 22-172 (229)
363 2v70_A SLIT-2, SLIT homolog 2 99.8 3.1E-19 1.1E-23 172.9 15.2 155 137-294 14-169 (220)
364 2xot_A Amphoterin-induced prot 99.8 1.3E-19 4.4E-24 190.0 12.1 152 88-243 21-176 (361)
365 3e6j_A Variable lymphocyte rec 99.8 1.2E-18 4E-23 170.1 17.2 156 160-319 21-176 (229)
366 1dce_A Protein (RAB geranylger 99.8 5.7E-22 2E-26 219.0 -9.5 204 27-261 346-567 (567)
367 4ezg_A Putative uncharacterize 99.8 5.9E-19 2E-23 168.0 11.2 107 131-241 41-147 (197)
368 1dce_A Protein (RAB geranylger 99.8 1.9E-21 6.5E-26 214.8 -7.3 204 51-285 346-567 (567)
369 4ezg_A Putative uncharacterize 99.8 4.2E-19 1.4E-23 169.1 9.8 155 154-316 40-195 (197)
370 1xeu_A Internalin C; cellular 99.8 1.8E-19 6E-24 179.8 7.5 167 111-292 20-186 (263)
371 1xeu_A Internalin C; cellular 99.8 7.3E-19 2.5E-23 175.3 11.3 170 133-317 18-187 (263)
372 4b8c_D Glucose-repressible alc 99.8 1.7E-19 5.8E-24 205.6 5.4 188 117-315 208-404 (727)
373 1zth_A RIO1 serine protein kin 99.7 7.2E-19 2.5E-23 174.8 6.9 138 416-565 48-219 (258)
374 4fdw_A Leucine rich hypothetic 99.7 5E-17 1.7E-21 171.6 21.3 264 6-314 113-382 (401)
375 3sb4_A Hypothetical leucine ri 99.7 1.7E-18 5.8E-23 179.1 7.8 265 28-308 23-327 (329)
376 3sb4_A Hypothetical leucine ri 99.7 1.4E-17 5E-22 172.1 12.5 242 5-261 48-328 (329)
377 4b8c_D Glucose-repressible alc 99.7 1.3E-18 4.5E-23 198.3 3.8 184 30-224 173-359 (727)
378 1w8a_A SLIT protein; signaling 99.7 3.9E-17 1.3E-21 154.5 12.6 129 161-292 11-140 (192)
379 4fdw_A Leucine rich hypothetic 99.7 5.5E-16 1.9E-20 163.7 22.4 254 51-325 110-368 (401)
380 1w8a_A SLIT protein; signaling 99.7 3.2E-17 1.1E-21 155.1 11.4 130 137-269 11-141 (192)
381 2ell_A Acidic leucine-rich nuc 99.7 9.3E-17 3.2E-21 148.6 10.2 132 134-267 24-160 (168)
382 2ell_A Acidic leucine-rich nuc 99.7 1.5E-16 5E-21 147.2 11.1 132 182-315 24-160 (168)
383 2wfh_A SLIT homolog 2 protein 99.7 5.7E-16 1.9E-20 146.4 12.9 127 161-291 13-139 (193)
384 2wfh_A SLIT homolog 2 protein 99.7 9.3E-16 3.2E-20 145.0 14.1 128 185-316 13-140 (193)
385 2o6r_A Variable lymphocyte rec 99.6 9.7E-16 3.3E-20 143.0 13.2 113 207-319 29-141 (177)
386 2je0_A Acidic leucine-rich nuc 99.6 1.4E-16 4.9E-21 144.0 6.3 127 182-310 17-148 (149)
387 2o6r_A Variable lymphocyte rec 99.6 2E-15 6.9E-20 140.8 14.0 131 161-294 10-140 (177)
388 2je0_A Acidic leucine-rich nuc 99.6 1.7E-15 5.7E-20 137.0 10.2 128 30-167 17-149 (149)
389 4gyi_A RIO2 kinase; protein ki 99.6 3.6E-16 1.2E-20 160.8 4.3 137 415-565 95-265 (397)
390 1a9n_A U2A', U2A'; complex (nu 99.6 2.2E-15 7.6E-20 140.3 7.2 131 179-315 16-153 (176)
391 1ds9_A Outer arm dynein; leuci 99.6 3.3E-17 1.1E-21 156.0 -5.6 155 155-316 15-186 (198)
392 1a9n_A U2A', U2A'; complex (nu 99.6 2.8E-15 9.6E-20 139.6 7.3 132 81-218 15-152 (176)
393 4fs7_A Uncharacterized protein 99.5 2.2E-13 7.4E-18 144.4 20.9 199 103-311 156-375 (394)
394 1ds9_A Outer arm dynein; leuci 99.5 3.6E-17 1.2E-21 155.8 -8.1 155 130-291 14-185 (198)
395 4fs7_A Uncharacterized protein 99.5 1.2E-12 4.2E-17 138.6 19.7 271 17-310 58-328 (394)
396 3g39_A Variable lymphocyte rec 99.5 1.6E-13 5.6E-18 126.6 10.9 105 184-291 11-115 (170)
397 3g39_A Variable lymphocyte rec 99.5 3.7E-13 1.3E-17 124.2 12.2 106 209-317 12-117 (170)
398 3un9_A NLR family member X1; l 99.4 3E-15 1E-19 156.5 -3.3 188 53-243 71-283 (372)
399 2r9u_A Variable lymphocyte rec 99.4 3.6E-13 1.2E-17 124.7 11.1 104 185-291 15-118 (174)
400 2r9u_A Variable lymphocyte rec 99.4 6.4E-13 2.2E-17 123.0 12.1 104 161-267 15-118 (174)
401 4gt6_A Cell surface protein; l 99.4 6.1E-12 2.1E-16 133.2 20.9 110 200-313 259-368 (394)
402 3un9_A NLR family member X1; l 99.4 2.7E-14 9.2E-19 149.2 0.4 167 84-250 71-259 (372)
403 4gt6_A Cell surface protein; l 99.4 2.1E-11 7.2E-16 129.1 21.0 297 19-335 52-366 (394)
404 2ifg_A High affinity nerve gro 99.3 7.9E-12 2.7E-16 130.0 9.7 103 162-267 12-116 (347)
405 3tm0_A Aminoglycoside 3'-phosp 99.3 3.8E-11 1.3E-15 119.6 13.5 147 410-563 9-212 (263)
406 4h09_A Hypothetical leucine ri 99.2 1E-09 3.4E-14 115.6 23.8 285 7-312 47-343 (379)
407 2ifg_A High affinity nerve gro 99.2 3.7E-11 1.3E-15 124.9 10.6 103 138-243 12-116 (347)
408 1nd4_A Aminoglycoside 3'-phosp 99.1 2.2E-10 7.5E-15 113.9 9.1 139 414-564 19-214 (264)
409 2ra8_A Uncharacterized protein 99.1 4.4E-11 1.5E-15 123.7 3.8 180 129-313 134-341 (362)
410 4h09_A Hypothetical leucine ri 99.1 1.5E-08 5.2E-13 106.5 23.2 280 2-302 65-356 (379)
411 2ra8_A Uncharacterized protein 99.0 1.1E-10 3.7E-15 120.8 5.6 129 111-241 194-341 (362)
412 3dxp_A Putative acyl-COA dehyd 98.9 6.7E-09 2.3E-13 108.3 11.1 142 419-564 42-248 (359)
413 1io0_A Tropomodulin; LRR prote 98.8 5E-10 1.7E-14 104.5 1.5 52 47-101 29-81 (185)
414 1io0_A Tropomodulin; LRR prote 98.8 9.3E-10 3.2E-14 102.7 2.8 124 21-147 27-164 (185)
415 3sg8_A APH(2'')-ID; antibiotic 98.8 1.9E-09 6.6E-14 109.6 3.0 187 420-617 25-287 (304)
416 3r70_A Aminoglycoside phosphot 98.5 8.5E-07 2.9E-11 90.5 13.0 136 416-564 38-237 (320)
417 3d1u_A Putative fructosamine-3 98.4 2.3E-06 8E-11 85.5 13.0 77 418-498 18-97 (288)
418 3e4g_A ATP synthase subunit S, 98.4 8.1E-08 2.8E-12 87.0 1.5 92 22-121 53-150 (176)
419 3rw6_A Nuclear RNA export fact 98.4 8E-08 2.7E-12 94.0 1.4 65 131-197 167-235 (267)
420 3rw6_A Nuclear RNA export fact 98.3 4.8E-08 1.6E-12 95.6 -1.0 39 181-219 169-209 (267)
421 3tdw_A Gentamicin resistance p 98.3 5.4E-06 1.9E-10 83.8 13.7 136 420-564 24-224 (306)
422 4gkh_A Aminoglycoside 3'-phosp 98.3 6.5E-06 2.2E-10 81.7 13.5 135 422-564 31-223 (272)
423 3e4g_A ATP synthase subunit S, 98.3 5.3E-07 1.8E-11 81.6 4.6 86 53-145 60-150 (176)
424 3ovc_A Hygromycin-B 4-O-kinase 98.2 7.8E-06 2.7E-10 84.7 11.9 143 417-565 43-244 (362)
425 1pgv_A TMD-1, tropomodulin TMD 98.1 8.9E-07 3E-11 81.7 3.3 47 51-100 38-85 (197)
426 1pgv_A TMD-1, tropomodulin TMD 98.1 9.9E-07 3.4E-11 81.4 3.6 123 22-147 33-170 (197)
427 3ats_A Putative uncharacterize 98.1 4.7E-06 1.6E-10 86.5 7.5 80 420-499 25-121 (357)
428 2q83_A YTAA protein; 2635576, 97.9 5.7E-05 2E-09 77.7 11.4 138 421-563 38-251 (346)
429 2olc_A MTR kinase, methylthior 97.8 6.7E-05 2.3E-09 78.9 10.9 75 420-496 35-120 (397)
430 3jr1_A Putative fructosamine-3 97.6 0.00038 1.3E-08 70.0 12.3 137 419-560 40-232 (312)
431 3f7w_A Putative fructosamine-3 97.6 0.00014 4.9E-09 72.6 8.8 79 415-497 15-96 (288)
432 2pyw_A Uncharacterized protein 97.3 0.00077 2.6E-08 71.3 11.0 80 532-613 230-312 (420)
433 2ppq_A HSK, HK, homoserine kin 97.1 0.0036 1.2E-07 63.4 13.0 156 405-563 7-216 (322)
434 3csv_A Aminoglycoside phosphot 97.1 0.0022 7.6E-08 65.4 10.7 139 421-564 24-217 (333)
435 1zyl_A Hypothetical protein YI 96.9 0.0047 1.6E-07 62.7 11.4 140 421-564 32-223 (328)
436 3dxq_A Choline/ethanolamine ki 96.9 0.0027 9.3E-08 63.6 9.3 71 420-498 23-95 (301)
437 1nw1_A Choline kinase (49.2 KD 96.8 0.0013 4.3E-08 69.6 6.7 72 420-497 78-158 (429)
438 2yle_A Protein spire homolog 1 96.8 0.0044 1.5E-07 57.3 9.1 104 496-617 33-136 (229)
439 3feg_A Choline/ethanolamine ki 96.8 0.0018 6.3E-08 66.8 7.3 139 421-564 56-254 (379)
440 3rfe_A Platelet glycoprotein I 96.8 0.0023 7.9E-08 54.9 6.7 36 56-98 33-68 (130)
441 3rfe_A Platelet glycoprotein I 96.8 0.0018 6E-08 55.7 5.7 57 258-316 12-69 (130)
442 2qg7_A Ethanolamine kinase PV0 96.7 0.0045 1.5E-07 65.7 9.2 74 420-498 113-188 (458)
443 3c5i_A Choline kinase; choline 96.4 0.0068 2.3E-07 62.7 8.2 72 421-497 39-120 (369)
444 3i1a_A Spectinomycin phosphotr 96.1 0.031 1.1E-06 56.9 11.6 32 533-564 205-236 (339)
445 3f2s_A CK, chetk-alpha, cholin 95.8 0.018 6.2E-07 59.6 8.2 140 421-564 58-280 (401)
446 3mes_A Choline kinase; malaria 94.8 0.03 1E-06 58.6 5.9 74 420-498 75-157 (424)
447 2ks1_B Epidermal growth factor 88.7 0.11 3.8E-06 34.1 0.6 25 364-388 18-42 (44)
448 3g15_A CK, chetk-alpha, cholin 88.4 0.51 1.7E-05 49.0 5.8 29 536-564 246-280 (401)
449 2l2t_A Receptor tyrosine-prote 85.7 0.4 1.4E-05 31.4 1.9 27 363-389 16-42 (44)
450 2lz0_A Uncharacterized protein 79.5 3.4 0.00012 32.9 5.8 48 40-95 6-53 (100)
451 3cxl_A N-chimerin; SH2, RHO-GA 72.3 0.41 1.4E-05 50.7 -2.1 60 419-481 146-214 (463)
452 4ano_A ESSB; membrane protein, 71.5 14 0.00049 34.0 8.4 117 469-619 48-164 (219)
453 2jwa_A Receptor tyrosine-prote 68.6 0.9 3.1E-05 29.7 -0.2 16 372-387 26-41 (44)
454 2lz0_A Uncharacterized protein 66.4 6.2 0.00021 31.4 4.3 50 15-65 5-54 (100)
455 4ann_A ESSB; membrane protein, 65.2 9.7 0.00033 35.0 5.8 121 469-623 43-163 (215)
456 2k1k_A Ephrin type-A receptor 62.8 2.5 8.6E-05 26.7 1.0 20 365-384 19-38 (38)
457 2x6h_A GH13170P, VPS34, phosph 41.7 3.9E+02 0.013 29.3 14.7 45 512-563 529-575 (696)
458 2klu_A T-cell surface glycopro 37.5 12 0.00041 26.5 1.2 18 362-379 12-29 (70)
459 3ls8_A Phosphatidylinositol 3- 32.1 5.1E+02 0.017 27.9 14.8 82 474-563 402-501 (614)
460 1iij_A ERBB-2 receptor protein 20.0 18 0.0006 22.3 -0.4 7 378-384 28-34 (35)
No 1
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=100.00 E-value=2.1e-54 Score=437.43 Aligned_cols=264 Identities=26% Similarity=0.425 Sum_probs=208.3
Q ss_pred hCCCCccccccccCceEEEEEEECCCCEEEEEEeeccc--hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEEe
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLFDGTNVAIKVFNLQL--ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVLE 491 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 491 (704)
.+++...++||+|+||+||+|++. ..||||+++... ....+.|.+|++++++++|||||+++|++.+ +..++|||
T Consensus 35 ~~~l~l~~~iG~G~fG~Vy~~~~~--~~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVmE 111 (307)
T 3omv_A 35 ASEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQ 111 (307)
T ss_dssp TTSCCEEEECCCCSSSEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEE
T ss_pred HHHeEEeeEEeeCCCcEEEEEEEC--CcEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC-CeEEEEEE
Confidence 357778899999999999999865 369999986432 3445789999999999999999999998865 56799999
Q ss_pred ccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCCCc
Q 005278 492 FMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGDDS 571 (704)
Q Consensus 492 ~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~~~ 571 (704)
||++|+|.++++.....+++..+..++.|||.||+|||+ ++||||||||+|||+++++.+||+|||+|+........
T Consensus 112 y~~gGsL~~~l~~~~~~l~~~~~~~i~~qia~gL~yLH~---~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~ 188 (307)
T 3omv_A 112 WCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHA---KNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGS 188 (307)
T ss_dssp CCSSCBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHH---TTCBCSCCCSSSEEEETTEEEEECCCSSCBC-------
T ss_pred cCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH---CCccCCccCHHHEEECCCCcEEEeeccCceecccCCcc
Confidence 999999999998877779999999999999999999964 68999999999999999999999999999877554433
Q ss_pred ceeccccccccccCCcccCC---CCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccch
Q 005278 572 VIQTMTIATIGYMAPEYGSE---GIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLV 648 (704)
Q Consensus 572 ~~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (704)
.......||+.|||||++.+ +.++.++|||||||++|||+||+.||.+...... ....+..... .+..
T Consensus 189 ~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~-~~~~~~~~~~-------~p~~- 259 (307)
T 3omv_A 189 QQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQ-IIFMVGRGYA-------SPDL- 259 (307)
T ss_dssp -----CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHH-HHHHHHTTCC-------CCCS-
T ss_pred eeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChHHH-HHHHHhcCCC-------CCCc-
Confidence 34455689999999998853 4689999999999999999999999976432111 1111111100 0100
Q ss_pred hhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHHhh
Q 005278 649 REEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEKFL 697 (704)
Q Consensus 649 ~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~ 697 (704)
...+.+++..+.+++.+||+.||++||||+||++.|+.++..+.
T Consensus 260 -----~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~~lp 303 (307)
T 3omv_A 260 -----SKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLP 303 (307)
T ss_dssp -----TTSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHTTCC
T ss_pred -----ccccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhccCC
Confidence 11223566788999999999999999999999999999887664
No 2
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=100.00 E-value=3.6e-55 Score=443.35 Aligned_cols=260 Identities=27% Similarity=0.436 Sum_probs=216.4
Q ss_pred CCCCccccccccCceEEEEEEEC------CCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEE
Q 005278 415 NGFNECNLLGTGSFGSVYKGTLF------DGTNVAIKVFNLQLERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKAL 488 (704)
Q Consensus 415 ~~~~~~~~ig~G~~g~V~~~~~~------~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 488 (704)
++|...+.||+|+||+||+|++. +++.||||+++.......+.|.+|++++++++|||||+++|+|.+.+..++
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 92 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM 92 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEE
Confidence 46777889999999999999863 478899999987666667889999999999999999999999999999999
Q ss_pred EEeccCCCCHHHHHhhCC------------CccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEE
Q 005278 489 VLEFMPNGSLEKWLYSHN------------YFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHV 556 (704)
Q Consensus 489 v~e~~~~gsL~~~l~~~~------------~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl 556 (704)
|||||++|+|.++++..+ ..++|..+..++.|||.||+||| +++||||||||+|||+++++.+||
T Consensus 93 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDlKp~NILl~~~~~~Ki 169 (299)
T 4asz_A 93 VFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLA---SQHFVHRDLATRNCLVGENLLVKI 169 (299)
T ss_dssp EEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEE
T ss_pred EEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCccCHhhEEECCCCcEEE
Confidence 999999999999997542 46899999999999999999996 468999999999999999999999
Q ss_pred eeeccceecCCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhh-CCCCCCccccccccHHHHHHhhc
Q 005278 557 SDFGISKLLGEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFT-RKKPTNEIFIGEMSLKHWVKESL 635 (704)
Q Consensus 557 ~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~ 635 (704)
+|||+|+...............||+.|||||++.+..++.++|||||||++|||+| |+.||.+.... .....+..
T Consensus 170 ~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~--~~~~~i~~-- 245 (299)
T 4asz_A 170 GDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNN--EVIECITQ-- 245 (299)
T ss_dssp CCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHH--HHHHHHHH--
T ss_pred CCcccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHH--HHHHHHHc--
Confidence 99999987754443333444579999999999999999999999999999999999 89999764321 11111111
Q ss_pred CCCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHHh
Q 005278 636 PDGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEKF 696 (704)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~~ 696 (704)
+.....+..++.++.+++.+||+.||++||||+||.+.|+++.+..
T Consensus 246 ---------------~~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~~ 291 (299)
T 4asz_A 246 ---------------GRVLQRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKAS 291 (299)
T ss_dssp ---------------TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHS
T ss_pred ---------------CCCCCCCccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhcC
Confidence 0111223456778999999999999999999999999999987643
No 3
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=100.00 E-value=1.9e-54 Score=444.31 Aligned_cols=259 Identities=27% Similarity=0.431 Sum_probs=208.4
Q ss_pred CCCCccccccccCceEEEEEEEC------CCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEE
Q 005278 415 NGFNECNLLGTGSFGSVYKGTLF------DGTNVAIKVFNLQLERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKAL 488 (704)
Q Consensus 415 ~~~~~~~~ig~G~~g~V~~~~~~------~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 488 (704)
++|...+.||+|+||+||+|++. +++.||||+++.......+.|.+|++++++++|||||+++|+|.+.+..++
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 120 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLM 120 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEE
Confidence 45667789999999999999864 478899999987666667789999999999999999999999999999999
Q ss_pred EEeccCCCCHHHHHhhCC--------------CccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcE
Q 005278 489 VLEFMPNGSLEKWLYSHN--------------YFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTA 554 (704)
Q Consensus 489 v~e~~~~gsL~~~l~~~~--------------~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~ 554 (704)
|||||++|+|.++++... ..++|..+..++.|||.||+||| +++||||||||+|||+++++.+
T Consensus 121 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDLKp~NILl~~~~~~ 197 (329)
T 4aoj_A 121 VFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLA---GLHFVHRDLATRNCLVGQGLVV 197 (329)
T ss_dssp EEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEETTTEE
T ss_pred EEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHh---cCCeecccccHhhEEECCCCcE
Confidence 999999999999997542 35899999999999999999996 4679999999999999999999
Q ss_pred EEeeeccceecCCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhh-CCCCCCccccccccHHHHHHh
Q 005278 555 HVSDFGISKLLGEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFT-RKKPTNEIFIGEMSLKHWVKE 633 (704)
Q Consensus 555 kl~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~ 633 (704)
||+|||+|+...........+...||+.|||||++.+..++.++|||||||++|||+| |+.||.+.... .....+..
T Consensus 198 Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~--~~~~~i~~ 275 (329)
T 4aoj_A 198 KIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNT--EAIDCITQ 275 (329)
T ss_dssp EECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHH--HHHHHHHH
T ss_pred EEcccccceeccCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCCHH--HHHHHHHc
Confidence 9999999997755444444455679999999999999999999999999999999999 89999764321 11111111
Q ss_pred hcCCCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHH
Q 005278 634 SLPDGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEK 695 (704)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~ 695 (704)
+.....+..+++++.+++.+||+.||++||||+||++.|+.+.+.
T Consensus 276 -----------------g~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~ 320 (329)
T 4aoj_A 276 -----------------GRELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQA 320 (329)
T ss_dssp -----------------TCCCCCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred -----------------CCCCCCcccccHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHhhC
Confidence 011122345677899999999999999999999999999998764
No 4
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=100.00 E-value=1.7e-54 Score=440.37 Aligned_cols=255 Identities=25% Similarity=0.420 Sum_probs=210.8
Q ss_pred CCCccccccccCceEEEEEEEC------CCCEEEEEEeeccch-hhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEE
Q 005278 416 GFNECNLLGTGSFGSVYKGTLF------DGTNVAIKVFNLQLE-RASRSFDSECEILRSIRHRNLIKIISNCCNIDFKAL 488 (704)
Q Consensus 416 ~~~~~~~ig~G~~g~V~~~~~~------~~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 488 (704)
+++..+.||+|+||+||+|++. +++.||||+++.... ...+.|.+|+.++++++|||||+++|+|.+.+..++
T Consensus 27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~l 106 (308)
T 4gt4_A 27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSM 106 (308)
T ss_dssp GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred HCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEEEE
Confidence 3455678999999999999863 467899999975432 345789999999999999999999999999999999
Q ss_pred EEeccCCCCHHHHHhhC---------------CCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCc
Q 005278 489 VLEFMPNGSLEKWLYSH---------------NYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMT 553 (704)
Q Consensus 489 v~e~~~~gsL~~~l~~~---------------~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~ 553 (704)
|||||++|+|.+++... ...++|..+..++.|||.||+||| +.+||||||||+|||+++++.
T Consensus 107 V~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDLK~~NILl~~~~~ 183 (308)
T 4gt4_A 107 IFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLS---SHHVVHKDLATRNVLVYDKLN 183 (308)
T ss_dssp EEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGC
T ss_pred EEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHH---hCCCCCCCccccceEECCCCC
Confidence 99999999999999743 235899999999999999999995 467999999999999999999
Q ss_pred EEEeeeccceecCCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhh-CCCCCCccccccccHHHHHH
Q 005278 554 AHVSDFGISKLLGEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFT-RKKPTNEIFIGEMSLKHWVK 632 (704)
Q Consensus 554 ~kl~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~ 632 (704)
+||+|||+|+.+.........+...||++|||||++.++.++.++|||||||++|||+| |+.||.+.... .....+.
T Consensus 184 ~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~--~~~~~i~ 261 (308)
T 4gt4_A 184 VKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQ--DVVEMIR 261 (308)
T ss_dssp EEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHH--HHHHHHH
T ss_pred EEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCCHH--HHHHHHH
Confidence 99999999987754443334455679999999999999999999999999999999999 89999764321 1222211
Q ss_pred hhcCCCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHh
Q 005278 633 ESLPDGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKI 692 (704)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~ 692 (704)
. +...+.+.+++..+.+++.+||+.||++||||+||++.|+++
T Consensus 262 ~-----------------~~~~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~ 304 (308)
T 4gt4_A 262 N-----------------RQVLPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAW 304 (308)
T ss_dssp T-----------------TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred c-----------------CCCCCCcccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence 1 011123346678899999999999999999999999999865
No 5
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=1.6e-51 Score=419.89 Aligned_cols=268 Identities=22% Similarity=0.311 Sum_probs=204.9
Q ss_pred CCCccccccccCceEEEEEEECCCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCC----eEEEEEe
Q 005278 416 GFNECNLLGTGSFGSVYKGTLFDGTNVAIKVFNLQLERASRSFDSECEILRSIRHRNLIKIISNCCNID----FKALVLE 491 (704)
Q Consensus 416 ~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~----~~~lv~e 491 (704)
+|...+.||+|+||+||+|++ +|+.||||+++.... ....++.|+..+.+++|||||+++|++.+.+ ..++|||
T Consensus 4 ~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~~-~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~E 81 (303)
T 3hmm_A 4 TIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREE-RSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSD 81 (303)
T ss_dssp GEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEE
T ss_pred EEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccch-hhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEec
Confidence 466778999999999999987 589999999865422 2233455777778899999999999997654 5799999
Q ss_pred ccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhc-----CCCCcEecCCCCCCeeeCCCCcEEEeeeccceecC
Q 005278 492 FMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHG-----HSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLG 566 (704)
Q Consensus 492 ~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~-----h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~ 566 (704)
||++|+|.++++... ++|..+.+++.|++.||+|||+. |+++||||||||+|||++.++++||+|||+|+...
T Consensus 82 y~~~gsL~~~l~~~~--l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~ 159 (303)
T 3hmm_A 82 YHEHGSLFDYLNRYT--VTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHD 159 (303)
T ss_dssp CCTTCBHHHHHHHCC--BCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEEEE
T ss_pred CCCCCcHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCCcccc
Confidence 999999999998654 89999999999999999999864 46799999999999999999999999999998875
Q ss_pred CCCCcc--eeccccccccccCCcccCCC------CCCcccceeeHHHHHHHHhhCCCCCCcccc----------ccccHH
Q 005278 567 EGDDSV--IQTMTIATIGYMAPEYGSEG------IISPKSDVYSYGILLMETFTRKKPTNEIFI----------GEMSLK 628 (704)
Q Consensus 567 ~~~~~~--~~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~----------~~~~~~ 628 (704)
...... ......||+.|||||++.+. .++.++|||||||++|||+||+.||..... ......
T Consensus 160 ~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~~~ 239 (303)
T 3hmm_A 160 SATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVE 239 (303)
T ss_dssp TTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHH
T ss_pred CCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccccchHH
Confidence 543321 22345799999999998654 467899999999999999999877654322 112222
Q ss_pred HHHHhhcCCCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHH
Q 005278 629 HWVKESLPDGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEK 695 (704)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~ 695 (704)
.+......... ++.+ +......+++..+.+++.+||+.||++||||.||++.|+++.++
T Consensus 240 ~~~~~~~~~~~----rp~~----p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~~ 298 (303)
T 3hmm_A 240 EMRKVVCEQKL----RPNI----PNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ 298 (303)
T ss_dssp HHHHHHTTSCC----CCCC----CGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHhcccC----CCCC----CccccchHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHH
Confidence 22221111111 1111 11122335677899999999999999999999999999998753
No 6
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=100.00 E-value=6.6e-52 Score=424.09 Aligned_cols=249 Identities=22% Similarity=0.305 Sum_probs=208.4
Q ss_pred CCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEEecc
Q 005278 415 NGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQLERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVLEFM 493 (704)
Q Consensus 415 ~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 493 (704)
+.|+..+.||+|+||+||+|+.. +|+.||||++........+.+.+|++++++++|||||++++++.+.+..|+||||+
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 153 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 153 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCC
Confidence 56889999999999999999965 79999999997665555677899999999999999999999999999999999999
Q ss_pred CCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCCCcce
Q 005278 494 PNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGDDSVI 573 (704)
Q Consensus 494 ~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~~~~~ 573 (704)
++|+|.+++... .+++..+..++.||+.||+||| +++||||||||+|||++.++.+||+|||+|+.+..... .
T Consensus 154 ~gg~L~~~l~~~--~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~--~ 226 (346)
T 4fih_A 154 EGGALTDIVTHT--RMNEEQIAAVCLAVLQALSVLH---AQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP--R 226 (346)
T ss_dssp TTEEHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSC--C
T ss_pred CCCcHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHH---HCCcccccCCHHHEEECCCCCEEEecCcCceecCCCCC--c
Confidence 999999999764 3899999999999999999995 57899999999999999999999999999998754322 2
Q ss_pred eccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccchhhhhh
Q 005278 574 QTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLVREEQA 653 (704)
Q Consensus 574 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (704)
....+||+.|||||++.+..|+.++||||+||++|||++|+.||.+... ......+....+. .
T Consensus 227 ~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~--~~~~~~i~~~~~~---------------~ 289 (346)
T 4fih_A 227 RKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP--LKAMKMIRDNLPP---------------R 289 (346)
T ss_dssp BCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH--HHHHHHHHHSSCC---------------C
T ss_pred ccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH--HHHHHHHHcCCCC---------------C
Confidence 3456899999999999999999999999999999999999999976321 1111111111111 1
Q ss_pred hhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 654 FSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 654 ~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
...+..++.++.+++.+||+.||++|||+.|+++
T Consensus 290 ~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~ 323 (346)
T 4fih_A 290 LKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLK 323 (346)
T ss_dssp CSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 1112244567889999999999999999999954
No 7
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=100.00 E-value=4.3e-52 Score=430.15 Aligned_cols=265 Identities=26% Similarity=0.397 Sum_probs=217.8
Q ss_pred HHhCCCCccccccccCceEEEEEEECC------CCEEEEEEeeccc-hhhhHHHHHHHHHHHhcCC-CCCceEEeeeeeC
Q 005278 412 RATNGFNECNLLGTGSFGSVYKGTLFD------GTNVAIKVFNLQL-ERASRSFDSECEILRSIRH-RNLIKIISNCCNI 483 (704)
Q Consensus 412 ~~~~~~~~~~~ig~G~~g~V~~~~~~~------~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h-~niv~l~~~~~~~ 483 (704)
...++|+..+.||+|+||+||+|++.. ++.||||++.... ....+.|.+|++++++++| ||||+++|+|.+.
T Consensus 61 i~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~~~~~ 140 (353)
T 4ase_A 61 FPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKP 140 (353)
T ss_dssp CCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCT
T ss_pred ecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEEEEEEec
Confidence 345789999999999999999998542 3679999997654 3345679999999999965 8999999998764
Q ss_pred -CeEEEEEeccCCCCHHHHHhhC---------------CCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCee
Q 005278 484 -DFKALVLEFMPNGSLEKWLYSH---------------NYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNIL 547 (704)
Q Consensus 484 -~~~~lv~e~~~~gsL~~~l~~~---------------~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil 547 (704)
+..++|||||++|+|.++++.. ...+++..+..++.|||.||+||| +++||||||||+|||
T Consensus 141 ~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH---~~~iiHRDLK~~NIL 217 (353)
T 4ase_A 141 GGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAARNIL 217 (353)
T ss_dssp TSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEE
T ss_pred CCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHh---hCCeecCccCcccee
Confidence 5689999999999999999753 234899999999999999999995 578999999999999
Q ss_pred eCCCCcEEEeeeccceecCCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhh-CCCCCCcccccccc
Q 005278 548 LDENMTAHVSDFGISKLLGEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFT-RKKPTNEIFIGEMS 626 (704)
Q Consensus 548 ~~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-g~~p~~~~~~~~~~ 626 (704)
+++++.+||+|||+|+.+.........+...||+.|||||++.+..++.++|||||||++|||+| |+.||.+....+.
T Consensus 218 l~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~~~~- 296 (353)
T 4ase_A 218 LSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE- 296 (353)
T ss_dssp ECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHH-
T ss_pred eCCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCCHHHH-
Confidence 99999999999999998765555555566789999999999999999999999999999999998 8999976432211
Q ss_pred HHHHHHhhcCCCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHHhh
Q 005278 627 LKHWVKESLPDGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEKFL 697 (704)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~ 697 (704)
+...+... .....+..+++++.+++.+||+.||++||||+||++.|+++.+...
T Consensus 297 ~~~~i~~g-----------------~~~~~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq~~~ 350 (353)
T 4ase_A 297 FCRRLKEG-----------------TRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQANA 350 (353)
T ss_dssp HHHHHHHT-----------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcC-----------------CCCCCCccCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHHHHhh
Confidence 11111111 1112233456788999999999999999999999999999876544
No 8
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=100.00 E-value=1.6e-51 Score=420.14 Aligned_cols=256 Identities=20% Similarity=0.233 Sum_probs=208.0
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEEec
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQLERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVLEF 492 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 492 (704)
.+.|...++||+|+||+||+|+.. +|+.||||+++.... ..+|+.++++++|||||++++++.+.+..|+||||
T Consensus 57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy 131 (336)
T 4g3f_A 57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVREGPWVNIFMEL 131 (336)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred hhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh-----HHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEec
Confidence 356778889999999999999964 699999999975422 24699999999999999999999999999999999
Q ss_pred cCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCC-cEEEeeeccceecCCCCCc
Q 005278 493 MPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENM-TAHVSDFGISKLLGEGDDS 571 (704)
Q Consensus 493 ~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~-~~kl~Dfgla~~~~~~~~~ 571 (704)
+++|+|.+++.+.+ .+++..+..++.||+.||+|| |+++||||||||+|||++.++ ++||+|||+|+.+......
T Consensus 132 ~~gg~L~~~l~~~~-~l~e~~~~~~~~qi~~aL~yl---H~~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~ 207 (336)
T 4g3f_A 132 LEGGSLGQLIKQMG-CLPEDRALYYLGQALEGLEYL---HTRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLG 207 (336)
T ss_dssp CTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHH---HTTTEECSCCCGGGEEECTTSCCEEECCCTTCEEC------
T ss_pred cCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHH---HHCCceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCCcc
Confidence 99999999998654 489999999999999999999 567899999999999999987 6999999999987543221
Q ss_pred ---ceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccch
Q 005278 572 ---VIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLV 648 (704)
Q Consensus 572 ---~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (704)
......+||+.|||||++.+..++.++|||||||++|||+||+.||.+...... +.......
T Consensus 208 ~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~-~~~i~~~~-------------- 272 (336)
T 4g3f_A 208 KSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPL-CLKIASEP-------------- 272 (336)
T ss_dssp ------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCC-HHHHHHSC--------------
T ss_pred cceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHH-HHHHHcCC--------------
Confidence 122335799999999999999999999999999999999999999976433222 11111100
Q ss_pred hhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHH
Q 005278 649 REEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEK 695 (704)
Q Consensus 649 ~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~ 695 (704)
.+....+..++..+.+++.+||+.||++|||+.|+++.|.+..+.
T Consensus 273 --~~~~~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~ 317 (336)
T 4g3f_A 273 --PPIREIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQE 317 (336)
T ss_dssp --CGGGGSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred --CCchhcCccCCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHHhh
Confidence 001112335567888999999999999999999999999887654
No 9
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=100.00 E-value=4.6e-52 Score=418.82 Aligned_cols=250 Identities=22% Similarity=0.317 Sum_probs=208.8
Q ss_pred CCCCccccccccCceEEEEEEE-CCCCEEEEEEeeccc---hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEE
Q 005278 415 NGFNECNLLGTGSFGSVYKGTL-FDGTNVAIKVFNLQL---ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVL 490 (704)
Q Consensus 415 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 490 (704)
++|+..+.||+|+||+||+|+. .+|+.||||++.+.. ....+.+.+|++++++++|||||++++++.+.+..|+||
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm 111 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 111 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 5799999999999999999985 479999999997543 234567899999999999999999999999999999999
Q ss_pred eccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCCC
Q 005278 491 EFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGDD 570 (704)
Q Consensus 491 e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~~ 570 (704)
||+++|+|.+++.+.+ .+++..+..++.||+.||+||| +++|+||||||+|||++.++.+||+|||+|+.+.....
T Consensus 112 Ey~~gG~L~~~i~~~~-~l~e~~~~~~~~qi~~al~ylH---~~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~~ 187 (311)
T 4aw0_A 112 SYAKNGELLKYIRKIG-SFDETCTRFYTAEIVSALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK 187 (311)
T ss_dssp CCCTTEEHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTCEECCTTTT
T ss_pred ecCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCCHHHeEEcCCCCEEEEEcCCceecCCCCC
Confidence 9999999999998654 4899999999999999999995 57899999999999999999999999999998865444
Q ss_pred cceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccchhh
Q 005278 571 SVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLVRE 650 (704)
Q Consensus 571 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (704)
.......+||+.|||||++.+..++.++||||+||++|||+||+.||.+.... ..+.......
T Consensus 188 ~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~-~~~~~i~~~~---------------- 250 (311)
T 4aw0_A 188 QARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEG-LIFAKIIKLE---------------- 250 (311)
T ss_dssp CCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHTC----------------
T ss_pred cccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHcCC----------------
Confidence 44445668999999999999999999999999999999999999999763211 1111111100
Q ss_pred hhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 005278 651 EQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAK 688 (704)
Q Consensus 651 ~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~ 688 (704)
...+..++.++.+++.+|++.||++|||++|+...
T Consensus 251 ---~~~p~~~s~~~~dli~~lL~~dp~~R~t~~e~~~~ 285 (311)
T 4aw0_A 251 ---YDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGY 285 (311)
T ss_dssp ---CCCCTTCCHHHHHHHHHHSCSSGGGSTTSGGGTCH
T ss_pred ---CCCCcccCHHHHHHHHHHccCCHhHCcChHHHcCC
Confidence 01112345678899999999999999999997543
No 10
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=100.00 E-value=1.3e-51 Score=422.65 Aligned_cols=249 Identities=22% Similarity=0.342 Sum_probs=201.1
Q ss_pred CCCCccccccccCceEEEEEEE-CCCCEEEEEEeeccc--hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEEe
Q 005278 415 NGFNECNLLGTGSFGSVYKGTL-FDGTNVAIKVFNLQL--ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVLE 491 (704)
Q Consensus 415 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 491 (704)
++|++.+.||+|+||+||+|+. .+|+.||||++.... ....+.+.+|++++++++|||||++++++.+.+..|+|||
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE 103 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD 103 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEe
Confidence 6899999999999999999986 479999999997543 3345679999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHhhC-CCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCCC
Q 005278 492 FMPNGSLEKWLYSH-NYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGDD 570 (704)
Q Consensus 492 ~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~~ 570 (704)
|+++|+|.+++... ...+++..+..++.||+.||+||| +++||||||||+|||+++++.+||+|||+|+.+...
T Consensus 104 y~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~-- 178 (350)
T 4b9d_A 104 YCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVH---DRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNST-- 178 (350)
T ss_dssp CCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTCEETTCCGGGEEECTTCCEEECSTTEESCCCHH--
T ss_pred CCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCCHHHEEECCCCCEEEcccccceeecCC--
Confidence 99999999999854 345789999999999999999995 578999999999999999999999999999876321
Q ss_pred cceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccchhh
Q 005278 571 SVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLVRE 650 (704)
Q Consensus 571 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (704)
.......+||+.|||||++.+..|+.++||||+||++|||+||+.||.+... .+..........
T Consensus 179 ~~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~-----~~~~~~i~~~~~----------- 242 (350)
T 4b9d_A 179 VELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSM-----KNLVLKIISGSF----------- 242 (350)
T ss_dssp HHHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSH-----HHHHHHHHHTCC-----------
T ss_pred cccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH-----HHHHHHHHcCCC-----------
Confidence 1122345799999999999999999999999999999999999999976321 111111110000
Q ss_pred hhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 651 EQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 651 ~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
...+..++.++.+++.+||+.||++|||++|+++
T Consensus 243 ---~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~ 276 (350)
T 4b9d_A 243 ---PPVSLHYSYDLRSLVSQLFKRNPRDRPSVNSILE 276 (350)
T ss_dssp ---CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred ---CCCCccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 0112234567889999999999999999999976
No 11
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=100.00 E-value=1e-50 Score=407.51 Aligned_cols=246 Identities=24% Similarity=0.376 Sum_probs=195.2
Q ss_pred CccccccccCceEEEEEEEC-CCCEEEEEEeeccc--hhhhHHHHHHHHHHHhcCCCCCceEEeeeee----CCeEEEEE
Q 005278 418 NECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL--ERASRSFDSECEILRSIRHRNLIKIISNCCN----IDFKALVL 490 (704)
Q Consensus 418 ~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~----~~~~~lv~ 490 (704)
...+.||+|+||+||+|+.. +++.||+|++.... ....+.|.+|++++++++|||||++++++.+ ....++||
T Consensus 29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvm 108 (290)
T 3fpq_A 29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT 108 (290)
T ss_dssp EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEE
T ss_pred EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEE
Confidence 44567999999999999864 68999999987543 3345679999999999999999999999865 34579999
Q ss_pred eccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeC-CCCcEEEeeeccceecCCCC
Q 005278 491 EFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLD-ENMTAHVSDFGISKLLGEGD 569 (704)
Q Consensus 491 e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~-~~~~~kl~Dfgla~~~~~~~ 569 (704)
|||++|+|.+++.+.. .+++..+..++.||+.||+|||. +..+||||||||+|||++ .++.+||+|||+|+.....
T Consensus 109 Ey~~gg~L~~~l~~~~-~l~~~~~~~~~~qi~~aL~ylH~-~~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~~~- 185 (290)
T 3fpq_A 109 ELMTSGTLKTYLKRFK-VMKIKVLRSWCRQILKGLQFLHT-RTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRAS- 185 (290)
T ss_dssp ECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHT-SSSCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCCTT-
T ss_pred eCCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHH-CCCCEEecccChhheeEECCCCCEEEEeCcCCEeCCCC-
Confidence 9999999999998654 48999999999999999999975 334599999999999998 4799999999999864321
Q ss_pred CcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccchh
Q 005278 570 DSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLVR 649 (704)
Q Consensus 570 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (704)
.....+||+.|||||++.+ .++.++|||||||++|||+||+.||.+... ......... ....
T Consensus 186 ---~~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~~~~----~~~~~~~i~-~~~~--------- 247 (290)
T 3fpq_A 186 ---FAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQN----AAQIYRRVT-SGVK--------- 247 (290)
T ss_dssp ---SBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSS----HHHHHHHHT-TTCC---------
T ss_pred ---ccCCcccCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCCCCCCCCCc----HHHHHHHHH-cCCC---------
Confidence 2334579999999998865 699999999999999999999999965321 111111111 1100
Q ss_pred hhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 650 EEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 650 ~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
....+..+++++.+++.+||+.||++|||++|+++
T Consensus 248 ---~~~~~~~~~~~~~~li~~~L~~dP~~R~s~~e~l~ 282 (290)
T 3fpq_A 248 ---PASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN 282 (290)
T ss_dssp ---CGGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred ---CCCCCccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 00111223456889999999999999999999954
No 12
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=100.00 E-value=1.3e-50 Score=424.72 Aligned_cols=249 Identities=22% Similarity=0.309 Sum_probs=208.4
Q ss_pred CCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEEecc
Q 005278 415 NGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQLERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVLEFM 493 (704)
Q Consensus 415 ~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 493 (704)
+.|+..+.||+|+||+||+|+.. +|+.||||++........+.+.+|+.+|++++|||||++++++.+.+..|+|||||
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~ 230 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 230 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeCC
Confidence 56999999999999999999964 69999999998665555677999999999999999999999999999999999999
Q ss_pred CCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCCCcce
Q 005278 494 PNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGDDSVI 573 (704)
Q Consensus 494 ~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~~~~~ 573 (704)
++|+|.+++.... +++..+..++.||+.||+||| +++||||||||+|||++.++.+||+|||+|+.+..... .
T Consensus 231 ~gG~L~~~i~~~~--l~e~~~~~~~~qil~aL~ylH---~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~--~ 303 (423)
T 4fie_A 231 EGGALTDIVTHTR--MNEEQIAAVCLAVLQALSVLH---AQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP--R 303 (423)
T ss_dssp TTEEHHHHHHHSC--CCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSTTTEEECTTCCEEECCCTTCEECCSSCC--C
T ss_pred CCCcHHHHHhccC--CCHHHHHHHHHHHHHHHHHHH---HCCeecccCCHHHEEEcCCCCEEEecCccceECCCCCc--c
Confidence 9999999997643 899999999999999999995 57899999999999999999999999999998754322 2
Q ss_pred eccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccchhhhhh
Q 005278 574 QTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLVREEQA 653 (704)
Q Consensus 574 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (704)
....+||+.|||||++.+..|+.++||||+||++|||++|+.||.+... ......+....+..
T Consensus 304 ~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~--~~~~~~i~~~~~~~--------------- 366 (423)
T 4fie_A 304 RKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP--LKAMKMIRDNLPPR--------------- 366 (423)
T ss_dssp BCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH--HHHHHHHHHSCCCC---------------
T ss_pred ccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH--HHHHHHHHcCCCCC---------------
Confidence 3456799999999999999999999999999999999999999975321 11111111111111
Q ss_pred hhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 654 FSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 654 ~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
......++.++.+++.+||+.||++|||+.|+++
T Consensus 367 ~~~~~~~s~~~~dli~~~L~~dP~~R~ta~ell~ 400 (423)
T 4fie_A 367 LKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLK 400 (423)
T ss_dssp CSCTTSSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CcccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 1111234567889999999999999999999954
No 13
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=3.4e-50 Score=399.94 Aligned_cols=245 Identities=25% Similarity=0.416 Sum_probs=190.2
Q ss_pred CCCCccccccccCceEEEEEEE-CCCCEEEEEEeeccc---hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEE
Q 005278 415 NGFNECNLLGTGSFGSVYKGTL-FDGTNVAIKVFNLQL---ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVL 490 (704)
Q Consensus 415 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 490 (704)
++|++.+.||+|+||+||+|+. .+|+.||||++.... ....+.+.+|++++++++|||||++++++.+.+..++||
T Consensus 13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivm 92 (275)
T 3hyh_A 13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI 92 (275)
T ss_dssp -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEE
Confidence 6899999999999999999985 479999999997543 233467999999999999999999999999999999999
Q ss_pred eccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCCC
Q 005278 491 EFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGDD 570 (704)
Q Consensus 491 e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~~ 570 (704)
||+ +|+|.+++.+.+ .+++..+..++.|++.||+||| +++|+||||||+|||+++++.+||+|||+|+......
T Consensus 93 Ey~-~g~L~~~l~~~~-~l~e~~~~~~~~qi~~al~ylH---~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~- 166 (275)
T 3hyh_A 93 EYA-GNELFDYIVQRD-KMSEQEARRFFQQIISAVEYCH---RHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGN- 166 (275)
T ss_dssp ECC-CEEHHHHHHHSC-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCTTTEEECTTCCEEECCSSCC--------
T ss_pred eCC-CCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCcccccCChHHeEECCCCCEEEeecCCCeecCCCC-
Confidence 999 689999998654 4899999999999999999995 5789999999999999999999999999998764332
Q ss_pred cceeccccccccccCCcccCCCCC-CcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccchh
Q 005278 571 SVIQTMTIATIGYMAPEYGSEGII-SPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLVR 649 (704)
Q Consensus 571 ~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (704)
......||+.|||||++.+..+ +.++||||+||++|||+||+.||.+.. ...........
T Consensus 167 --~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~-----~~~~~~~i~~~------------ 227 (275)
T 3hyh_A 167 --FLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDES-----IPVLFKNISNG------------ 227 (275)
T ss_dssp ----------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSS-----HHHHHHHHHHT------------
T ss_pred --ccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCC-----HHHHHHHHHcC------------
Confidence 2334679999999999988775 579999999999999999999997521 11211111000
Q ss_pred hhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 650 EEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 650 ~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
....+..++.++.+++.+||+.||++|||++|+++
T Consensus 228 ---~~~~p~~~s~~~~~li~~~L~~dP~~R~s~~eil~ 262 (275)
T 3hyh_A 228 ---VYTLPKFLSPGAAGLIKRMLIVNPLNRISIHEIMQ 262 (275)
T ss_dssp ---CCCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred ---CCCCCCCCCHHHHHHHHHHccCChhHCcCHHHHHc
Confidence 00111234567889999999999999999999965
No 14
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=100.00 E-value=3.1e-50 Score=405.74 Aligned_cols=242 Identities=26% Similarity=0.298 Sum_probs=193.0
Q ss_pred CCCCccccccccCceEEEEEEEC----CCCEEEEEEeeccc--hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEE
Q 005278 415 NGFNECNLLGTGSFGSVYKGTLF----DGTNVAIKVFNLQL--ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKAL 488 (704)
Q Consensus 415 ~~~~~~~~ig~G~~g~V~~~~~~----~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 488 (704)
++|++.+.||+|+||+||+|+.. +++.||||+++... ......+.+|++++++++|||||++++++.+.+..++
T Consensus 24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~i 103 (304)
T 3ubd_A 24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYL 103 (304)
T ss_dssp GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEEE
T ss_pred cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEE
Confidence 47999999999999999999852 47889999997543 2234568899999999999999999999999999999
Q ss_pred EEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCC
Q 005278 489 VLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEG 568 (704)
Q Consensus 489 v~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~ 568 (704)
||||+++|+|.+++.+.+ .+++..+..++.|++.||+||| +++|+||||||+|||+++++.+||+|||+|+.....
T Consensus 104 vmEy~~gg~L~~~l~~~~-~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~ 179 (304)
T 3ubd_A 104 ILDFLRGGDLFTRLSKEV-MFTEEDVKFYLAELALALDHLH---SLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDH 179 (304)
T ss_dssp EECCCTTCEEHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCCGGGEEECTTSCEEEESSEEEEC----
T ss_pred EEEcCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCCCHHHeEEcCCCCEEecccccceeccCC
Confidence 999999999999998654 4899999999999999999995 578999999999999999999999999999865432
Q ss_pred CCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccch
Q 005278 569 DDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLV 648 (704)
Q Consensus 569 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (704)
.. .....+||+.|||||++.+..++.++||||+||++|||+||+.||.+... .+........
T Consensus 180 ~~--~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~-----~~~~~~i~~~----------- 241 (304)
T 3ubd_A 180 EK--KAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDR-----KETMTMILKA----------- 241 (304)
T ss_dssp -C--CCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHHHHC-----------
T ss_pred Cc--cccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCcCH-----HHHHHHHHcC-----------
Confidence 22 23346799999999999999999999999999999999999999976321 1111111000
Q ss_pred hhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCH
Q 005278 649 REEQAFSVKIDCLLSIMHLALDCCMESPEQRVSM 682 (704)
Q Consensus 649 ~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~ 682 (704)
....+..+++++.+++.+||+.||++|||+
T Consensus 242 ----~~~~p~~~s~~~~~li~~~L~~dP~~R~ta 271 (304)
T 3ubd_A 242 ----KLGMPQFLSPEAQSLLRMLFKRNPANRLGA 271 (304)
T ss_dssp ----CCCCCTTSCHHHHHHHHHHTCSSGGGSTTC
T ss_pred ----CCCCCCcCCHHHHHHHHHHcccCHHHCCCC
Confidence 011122345678899999999999999985
No 15
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=100.00 E-value=2.4e-48 Score=394.17 Aligned_cols=249 Identities=22% Similarity=0.343 Sum_probs=187.6
Q ss_pred CCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccc-hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCC--------
Q 005278 415 NGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL-ERASRSFDSECEILRSIRHRNLIKIISNCCNID-------- 484 (704)
Q Consensus 415 ~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~-------- 484 (704)
++|+..+.||+|+||+||+|+.. +|+.||||+++... ....+.+.+|++++++++|||||++++++.+.+
T Consensus 5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~ 84 (299)
T 4g31_A 5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPS 84 (299)
T ss_dssp HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC--------
T ss_pred hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCcccccccc
Confidence 46889999999999999999864 79999999997543 334567899999999999999999999987544
Q ss_pred ----eEEEEEeccCCCCHHHHHhhCCC--ccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEee
Q 005278 485 ----FKALVLEFMPNGSLEKWLYSHNY--FLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSD 558 (704)
Q Consensus 485 ----~~~lv~e~~~~gsL~~~l~~~~~--~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~D 558 (704)
..++||||+++|+|.+++..... ..++..+..++.|++.||+||| +++|+||||||+|||++.++.+||+|
T Consensus 85 ~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH---~~~IiHRDlKp~NILl~~~~~vKl~D 161 (299)
T 4g31_A 85 SPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLH---SKGLMHRDLKPSNIFFTMDDVVKVGD 161 (299)
T ss_dssp --CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECC
T ss_pred CCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHH---HCcCccccCcHHHeEECCCCcEEEcc
Confidence 36899999999999999986532 3466778899999999999995 57899999999999999999999999
Q ss_pred eccceecCCCCCc----------ceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHH
Q 005278 559 FGISKLLGEGDDS----------VIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLK 628 (704)
Q Consensus 559 fgla~~~~~~~~~----------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~ 628 (704)
||+|+.+...... ...+..+||+.|||||++.+..++.++|||||||++|||++ ||...... .
T Consensus 162 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~~~~----~ 234 (299)
T 4g31_A 162 FGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQMER----V 234 (299)
T ss_dssp CCCC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSHHHH----H
T ss_pred CccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCccHH----H
Confidence 9999887543221 11233579999999999999999999999999999999996 77542110 0
Q ss_pred HHHHhhcCCCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 629 HWVKESLPDGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
...... ..... .+......+...+++.+||+.||++|||+.|+++
T Consensus 235 ~~~~~~--------~~~~~------p~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~ 279 (299)
T 4g31_A 235 RTLTDV--------RNLKF------PPLFTQKYPCEYVMVQDMLSPSPMERPEAINIIE 279 (299)
T ss_dssp HHHHHH--------HTTCC------CHHHHHHCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHH--------hcCCC------CCCCcccCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 101100 00000 1112233455678999999999999999999965
No 16
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.2e-45 Score=386.75 Aligned_cols=268 Identities=23% Similarity=0.269 Sum_probs=200.2
Q ss_pred hCCCCccccccccCceEEEEEEE-CCCCEEEEEEeeccc--hhhhHHHHHHHHHHHhcCCCCCceEEeeeee------CC
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTL-FDGTNVAIKVFNLQL--ERASRSFDSECEILRSIRHRNLIKIISNCCN------ID 484 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~------~~ 484 (704)
.++|++.+.||+|+||+||+|+. .+|+.||||+++... ....+.+.+|+++|+.++|||||++++++.. .+
T Consensus 53 ~~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~ 132 (398)
T 4b99_A 53 GDEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFK 132 (398)
T ss_dssp CSSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCC
T ss_pred CCCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCC
Confidence 36799999999999999999986 479999999996543 2345678899999999999999999998764 35
Q ss_pred eEEEEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeecccee
Q 005278 485 FKALVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKL 564 (704)
Q Consensus 485 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~ 564 (704)
..|+|||||+ |+|.+++...+ .+++..+..++.||+.||+||| +.+||||||||+|||++.++.+||+|||+|+.
T Consensus 133 ~~~ivmE~~~-g~L~~~i~~~~-~l~~~~~~~~~~qil~al~ylH---~~~iiHRDlKP~NIl~~~~~~~Ki~DFGla~~ 207 (398)
T 4b99_A 133 SVYVVLDLME-SDLHQIIHSSQ-PLTLEHVRYFLYQLLRGLKYMH---SAQVIHRDLKPSNLLVNENCELKIGDFGMARG 207 (398)
T ss_dssp CEEEEEECCS-EEHHHHHTSSS-CCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTCCEEECCCTTCBC
T ss_pred EEEEEEeCCC-CCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCcCcCCCcCccccccCCCCCEEEeecceeee
Confidence 7899999996 68999997654 5899999999999999999995 57899999999999999999999999999987
Q ss_pred cCCCC--CcceeccccccccccCCcccCCC-CCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCC--c
Q 005278 565 LGEGD--DSVIQTMTIATIGYMAPEYGSEG-IISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDG--L 639 (704)
Q Consensus 565 ~~~~~--~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~--~ 639 (704)
+.... ........+||+.|||||++.+. .++.++||||+||++|||++|+.||.+.... ..+........... .
T Consensus 208 ~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~-~~l~~I~~~~g~p~~~~ 286 (398)
T 4b99_A 208 LCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYV-HQLQLIMMVLGTPSPAV 286 (398)
T ss_dssp C-------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHH-HHHHHHHHHHCCCCGGG
T ss_pred cccCccccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCCHH-HHHHHHHHhcCCCChHH
Confidence 64322 12233456899999999988765 5799999999999999999999999763211 11111111111100 0
Q ss_pred chhccccchhh--------h--hhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 640 TEVVDANLVRE--------E--QAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 640 ~~~~~~~~~~~--------~--~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
........... . .........+.++.+++.+||+.||++|||+.|+++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~ 344 (398)
T 4b99_A 287 IQAVGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALR 344 (398)
T ss_dssp TC-----CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred hhhhhhhhhhhhhhcCCCcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence 00000000000 0 000011123567889999999999999999999854
No 17
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=100.00 E-value=1.6e-45 Score=383.82 Aligned_cols=200 Identities=21% Similarity=0.292 Sum_probs=170.2
Q ss_pred HHHhCCCCccccccccCceEEEEEEEC----CCCEEEEEEeeccchhhhHHHHHHHHHHHhc-CCCCCceEEeeeeeCCe
Q 005278 411 QRATNGFNECNLLGTGSFGSVYKGTLF----DGTNVAIKVFNLQLERASRSFDSECEILRSI-RHRNLIKIISNCCNIDF 485 (704)
Q Consensus 411 ~~~~~~~~~~~~ig~G~~g~V~~~~~~----~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~ 485 (704)
....++|++.+.||+|+||+||+|+.+ +++.||||.+... .....+.+|+++++.+ +||||+++++++.+.+.
T Consensus 17 p~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~--~~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~ 94 (361)
T 4f9c_A 17 PQLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPT--SHPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDH 94 (361)
T ss_dssp GGGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTT--SCHHHHHHHHHHHHHTCSBTTBCCCSEEEEETTE
T ss_pred CCccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEccc--cCHHHHHHHHHHHHHhcCCCCCceEEEEEEECCE
Confidence 345678999999999999999999743 4678999988643 2345688999999998 69999999999999999
Q ss_pred EEEEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCC-CcEEEeeecccee
Q 005278 486 KALVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDEN-MTAHVSDFGISKL 564 (704)
Q Consensus 486 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~-~~~kl~Dfgla~~ 564 (704)
.++||||+++|+|.+++. .+++..+..++.|++.||+||| +.+|+||||||+|||++.+ +.+||+|||+|+.
T Consensus 95 ~~lvmE~~~g~~L~~~~~----~l~~~~~~~~~~qll~al~ylH---~~gIiHRDiKPeNiLl~~~~~~~kl~DFGla~~ 167 (361)
T 4f9c_A 95 VVIAMPYLEHESFLDILN----SLSFQEVREYMLNLFKALKRIH---QFGIVHRDVKPSNFLYNRRLKKYALVDFGLAQG 167 (361)
T ss_dssp EEEEEECCCCCCHHHHHT----TCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEETTTTEEEECCCTTCEE
T ss_pred EEEEEeCCCcccHHHHHc----CCCHHHHHHHHHHHHHHHHHHH---HCCeEeCcCCHHHeEEeCCCCeEEECcCCCCcc
Confidence 999999999999999984 3889999999999999999995 5789999999999999876 7999999999987
Q ss_pred cCCCCCc--------------------------ceeccccccccccCCcccCCC-CCCcccceeeHHHHHHHHhhCCCCC
Q 005278 565 LGEGDDS--------------------------VIQTMTIATIGYMAPEYGSEG-IISPKSDVYSYGILLMETFTRKKPT 617 (704)
Q Consensus 565 ~~~~~~~--------------------------~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tg~~p~ 617 (704)
....... ...+..+||+.|+|||++.+. .++.++||||+||++|||+||+.||
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G~~Pf 247 (361)
T 4f9c_A 168 THDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPF 247 (361)
T ss_dssp CTTCSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTCSSS
T ss_pred cCCccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHCCCCC
Confidence 6432211 112334799999999998765 5899999999999999999999999
Q ss_pred Cc
Q 005278 618 NE 619 (704)
Q Consensus 618 ~~ 619 (704)
..
T Consensus 248 ~~ 249 (361)
T 4f9c_A 248 YK 249 (361)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 18
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=100.00 E-value=2e-44 Score=373.86 Aligned_cols=283 Identities=35% Similarity=0.570 Sum_probs=233.6
Q ss_pred cchHHHHHHhCCCCccccccccCceEEEEEEECCCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCC
Q 005278 405 TSYLDIQRATNGFNECNLLGTGSFGSVYKGTLFDGTNVAIKVFNLQLERASRSFDSECEILRSIRHRNLIKIISNCCNID 484 (704)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~ 484 (704)
+.+.++...+++|+..+.||+|+||.||+|+..+++.||||++........+.+.+|++++++++||||+++++++...+
T Consensus 29 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~ 108 (321)
T 2qkw_B 29 VPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERN 108 (321)
T ss_dssp -CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCTT
T ss_pred ecHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCC
Confidence 34455666789999999999999999999998889999999987665556678999999999999999999999999999
Q ss_pred eEEEEEeccCCCCHHHHHhhCC---CccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeecc
Q 005278 485 FKALVLEFMPNGSLEKWLYSHN---YFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGI 561 (704)
Q Consensus 485 ~~~lv~e~~~~gsL~~~l~~~~---~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgl 561 (704)
..++||||+++|+|.+++.... ..+++..+..++.|++.||+|||. .+|+||||||+||+++.++.+||+|||+
T Consensus 109 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~kl~Dfg~ 185 (321)
T 2qkw_B 109 EMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHT---RAIIHRDVKSINILLDENFVPKITDFGI 185 (321)
T ss_dssp CCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCSTTEEECTTCCEEECCCTT
T ss_pred eEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcC---CCeecCCCCHHHEEECCCCCEEEeeccc
Confidence 9999999999999999997543 358999999999999999999964 7899999999999999999999999999
Q ss_pred ceecCCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccc-cccHHHHHHhhcCCC-c
Q 005278 562 SKLLGEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIG-EMSLKHWVKESLPDG-L 639 (704)
Q Consensus 562 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~-~~~~~~~~~~~~~~~-~ 639 (704)
++...............||+.|+|||++.+..++.++||||||+++|||+||+.||...... ......|........ +
T Consensus 186 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (321)
T 2qkw_B 186 SKKGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQL 265 (321)
T ss_dssp CEECSSSSCCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHTTTCC
T ss_pred ccccccccccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhccccccH
Confidence 98765433333334456899999999998889999999999999999999999999764333 234555544332222 3
Q ss_pred chhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHH
Q 005278 640 TEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEK 695 (704)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~ 695 (704)
...+++.... ....+++..+.+++.+||+.||++||++.|+++.|+.+.+.
T Consensus 266 ~~~~~~~~~~-----~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~l~~ 316 (321)
T 2qkw_B 266 EQIVDPNLAD-----KIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRL 316 (321)
T ss_dssp CSSSSSSCTT-----CSCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred HHhcChhhcc-----ccCHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhhc
Confidence 3444433322 22346778899999999999999999999999999988653
No 19
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=100.00 E-value=2.7e-44 Score=373.85 Aligned_cols=286 Identities=34% Similarity=0.528 Sum_probs=238.9
Q ss_pred ccccccchHHHHHHhCCCCccccccccCceEEEEEEECCCCEEEEEEeeccch-hhhHHHHHHHHHHHhcCCCCCceEEe
Q 005278 400 ATWRRTSYLDIQRATNGFNECNLLGTGSFGSVYKGTLFDGTNVAIKVFNLQLE-RASRSFDSECEILRSIRHRNLIKIIS 478 (704)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~l~~ 478 (704)
.....+++.++....++|+..+.||+|+||.||+|+..+++.||||++..... .....+.+|+++++.++||||+++++
T Consensus 15 ~~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~ 94 (326)
T 3uim_A 15 GQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRG 94 (326)
T ss_dssp CCCEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCE
T ss_pred CccceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEE
Confidence 45667889999999999999999999999999999988899999999876532 23347899999999999999999999
Q ss_pred eeeeCCeEEEEEeccCCCCHHHHHhhCC---CccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEE
Q 005278 479 NCCNIDFKALVLEFMPNGSLEKWLYSHN---YFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAH 555 (704)
Q Consensus 479 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~---~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~k 555 (704)
++...+..++||||+++|+|.+++.... ..+++..+..++.|++.||+|||..+..+|+||||||+||+++.++.+|
T Consensus 95 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~k 174 (326)
T 3uim_A 95 FCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAV 174 (326)
T ss_dssp EECCSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCEE
T ss_pred EEecCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCEE
Confidence 9999999999999999999999998543 3489999999999999999999886666999999999999999999999
Q ss_pred EeeeccceecCCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCcc---ccccccHHHHHH
Q 005278 556 VSDFGISKLLGEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEI---FIGEMSLKHWVK 632 (704)
Q Consensus 556 l~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~---~~~~~~~~~~~~ 632 (704)
|+|||+++....... .......||+.|+|||++.+..++.++|||||||++|||+||+.||+.. .........|..
T Consensus 175 l~Dfg~~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~ 253 (326)
T 3uim_A 175 VGDFGLAKLMDYKDT-HVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVK 253 (326)
T ss_dssp ECCCSSCEECCSSSS-CEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHT
T ss_pred eccCccccccCcccc-cccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHHH
Confidence 999999987754332 2234456999999999998888999999999999999999999999742 234456677776
Q ss_pred hhcCCC-cchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHH
Q 005278 633 ESLPDG-LTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKK 691 (704)
Q Consensus 633 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~ 691 (704)
...... .....+..... .....++..+.+++..||+.||++|||+.||+++|++
T Consensus 254 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~ 308 (326)
T 3uim_A 254 GLLKEKKLEALVDVDLQG-----NYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEG 308 (326)
T ss_dssp TTTSSCCSTTSSCTTCTT-----SCCHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHT
T ss_pred HHhhchhhhhhcChhhcc-----ccCHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcC
Confidence 555443 33444433322 2334667889999999999999999999999999975
No 20
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.7e-43 Score=409.19 Aligned_cols=338 Identities=35% Similarity=0.581 Sum_probs=278.4
Q ss_pred CCCCCCEEecCCCcCcccCCcc-ccCCCCCCEEeccCccccccCchhhcC---------------------------CCC
Q 005278 4 MLPNLKYLTLFDNKLSGTIPNS-ITNASKLIMLDLSSNSFSGLIPNTFGN---------------------------LGS 55 (704)
Q Consensus 4 ~l~~l~~L~l~~~~i~~~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~~~---------------------------l~~ 55 (704)
.+++|++|+|++|.+++.+|.. |.++++|++|+|++|.+++..|..|.+ +++
T Consensus 316 ~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~ 395 (768)
T 3rgz_A 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 395 (768)
T ss_dssp GCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCC
T ss_pred cCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCC
Confidence 3455555555555555444443 555555555555555555444544444 444
Q ss_pred CCEEecccccCCCcccchhhcccccCCCCCCCcEEEccCCCCcccCChhhhhcccccceEEecCCcccccCChhhhcCCC
Q 005278 56 LQVLSLAYNYLMTESSAAKWNFLSSLTNCRNLTVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSG 135 (704)
Q Consensus 56 L~~L~L~~n~i~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 135 (704)
|++|++++|.++.. .+..+.++++|++|+|++|++++..|..+..+. +|++|++++|.+.+.+|..+..+++
T Consensus 396 L~~L~L~~n~l~~~-------~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~ 467 (768)
T 3rgz_A 396 LQELYLQNNGFTGK-------IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKT 467 (768)
T ss_dssp CCEEECCSSEEEEE-------CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred ccEEECCCCccccc-------cCHHHhcCCCCCEEECcCCcccCcccHHHhcCC-CCCEEECCCCcccCcCCHHHcCCCC
Confidence 55555555554432 344588899999999999999999999988875 7999999999999999999999999
Q ss_pred CCEEEccCCcCccccChhhcCCCCcCeeeccCcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecC
Q 005278 136 MIVFDLNGCDLNGTIPTAVGRLRRLQGLYLHGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGS 215 (704)
Q Consensus 136 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 215 (704)
|++|++++|.+.+.+|..+.++++|+.|+|++|++++.+|..+..+++|++|+|++|++++.+|..+..+++|+.|++++
T Consensus 468 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 547 (768)
T 3rgz_A 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCS
T ss_pred ceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCc----------------------------------------------------------------------
Q 005278 216 NKLTSTMPSS---------------------------------------------------------------------- 225 (704)
Q Consensus 216 n~l~~~~~~~---------------------------------------------------------------------- 225 (704)
|.+++.+|..
T Consensus 548 N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~ 627 (768)
T 3rgz_A 548 NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627 (768)
T ss_dssp SEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCS
T ss_pred CccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchh
Confidence 9988666643
Q ss_pred ccCCccccEEEecCcccCCCCCcccccCcCCcEEEeecCccCCCCCCCcCCCCCcceeeccCceeeccCCcccccccccc
Q 005278 226 FGSLEYVLYINLSANSLNGSLPSNIQNLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSLADNQFQGPVPKSFGSLISLE 305 (704)
Q Consensus 226 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 305 (704)
+..+++|+.|+|++|++++.+|..++++++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|..+..+++|+
T Consensus 628 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~ 707 (768)
T 3rgz_A 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707 (768)
T ss_dssp CSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred hhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecccCCCCCCCC-----CcccccccCcccccCCCccCCCcccCCCcccc
Q 005278 306 SLDLSRNNLSGEIPK-----NFSAQSFLSNYALCGPARLQVPSCRKYNSRGF 352 (704)
Q Consensus 306 ~L~l~~N~l~~~~p~-----~~~~~~~l~~~~l~g~~~~~~~~c~~~~~~~~ 352 (704)
+|++++|+++|.+|. .|...++.+|..+||.|. +.|........
T Consensus 708 ~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l---~~C~~~~~~~~ 756 (768)
T 3rgz_A 708 EIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL---PRCDPSNADGY 756 (768)
T ss_dssp EEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTS---CCCCSCC----
T ss_pred EEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCC---cCCCCCccCCC
Confidence 999999999999997 355667889999999873 36876555443
No 21
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=100.00 E-value=4.1e-44 Score=396.05 Aligned_cols=252 Identities=22% Similarity=0.255 Sum_probs=209.3
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEEec
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQLERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVLEF 492 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 492 (704)
.++|++.+.||+|+||+||+|+.. +|+.||+|++........+.+.+|+++|+.++|||||++++++.+.+..++||||
T Consensus 156 l~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E~ 235 (573)
T 3uto_A 156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEF 235 (573)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred ccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEee
Confidence 368999999999999999999864 7999999999876556667899999999999999999999999999999999999
Q ss_pred cCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCC--CcEEEeeeccceecCCCCC
Q 005278 493 MPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDEN--MTAHVSDFGISKLLGEGDD 570 (704)
Q Consensus 493 ~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~--~~~kl~Dfgla~~~~~~~~ 570 (704)
|++|+|.+++......+++..+..++.||+.||+||| +++|+||||||+|||++.+ +.+||+|||+|+.+....
T Consensus 236 ~~gg~L~~~i~~~~~~l~e~~~~~~~~qi~~al~ylH---~~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~~- 311 (573)
T 3uto_A 236 MSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMH---ENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQ- 311 (573)
T ss_dssp CCCCBHHHHHTCTTSCEEHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSCCCEEECCCSSCEECCTTS-
T ss_pred cCCCcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCChhhccccCCCCCCEEEeeccceeEccCCC-
Confidence 9999999999866667999999999999999999995 5789999999999999854 899999999999875432
Q ss_pred cceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccchhh
Q 005278 571 SVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLVRE 650 (704)
Q Consensus 571 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (704)
.....+||+.|||||++.+..++.++||||+||++|||++|..||.+.... .....+...... +
T Consensus 312 --~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~~--~~~~~i~~~~~~-~----------- 375 (573)
T 3uto_A 312 --SVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDD--ETLRNVKSCDWN-M----------- 375 (573)
T ss_dssp --EEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHH--HHHHHHHTTCCC-C-----------
T ss_pred --ceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHH--HHHHHHHhCCCC-C-----------
Confidence 234457999999999999999999999999999999999999999763221 111111100000 0
Q ss_pred hhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 651 EQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 651 ~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
.......++.++.+|+.+||+.||++||++.|+++
T Consensus 376 --~~~~~~~~s~~~~dli~~~L~~dp~~R~t~~e~l~ 410 (573)
T 3uto_A 376 --DDSAFSGISEDGKDFIRKLLLADPNTRMTIHQALE 410 (573)
T ss_dssp --CSGGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred --CcccccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 00111234567889999999999999999999975
No 22
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=100.00 E-value=2.2e-44 Score=393.97 Aligned_cols=248 Identities=21% Similarity=0.287 Sum_probs=198.5
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccc---hhhhHHHHHH---HHHHHhcCCCCCceEEeeeeeCCeE
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL---ERASRSFDSE---CEILRSIRHRNLIKIISNCCNIDFK 486 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e---~~~l~~l~h~niv~l~~~~~~~~~~ 486 (704)
.++|++.+.||+|+||+||+|+.. +|+.||||++.+.. ......+.+| +.+++.++|||||++++++.+.+..
T Consensus 188 lddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~l 267 (689)
T 3v5w_A 188 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKL 267 (689)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEE
T ss_pred hHHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEE
Confidence 368999999999999999999965 69999999997543 1222333344 5666677999999999999999999
Q ss_pred EEEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecC
Q 005278 487 ALVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLG 566 (704)
Q Consensus 487 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~ 566 (704)
|+||||++||+|.+++.+.+ .+++..+..++.||+.||+|| |+.+||||||||+|||++.+|++||+|||+|+.+.
T Consensus 268 ylVmEy~~GGdL~~~l~~~~-~l~E~~a~~y~~qIl~aL~yL---H~~gIiHRDLKPeNILld~~G~vKL~DFGlA~~~~ 343 (689)
T 3v5w_A 268 SFILDLMNGGDLHYHLSQHG-VFSEADMRFYAAEIILGLEHM---HNRFVVYRDLKPANILLDEHGHVRISDLGLACDFS 343 (689)
T ss_dssp EEEECCCCSCBHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHH---HTTTEECCCCSGGGEEECTTSCEEECCCTTCEECS
T ss_pred EEEEecCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHH---HHCCccccCCchHHeEEeCCCCEEecccceeeecC
Confidence 99999999999999998654 489999999999999999999 56889999999999999999999999999999875
Q ss_pred CCCCcceeccccccccccCCcccCC-CCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccc
Q 005278 567 EGDDSVIQTMTIATIGYMAPEYGSE-GIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDA 645 (704)
Q Consensus 567 ~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (704)
... ....+||+.|||||++.. ..|+.++|+||+||++|||++|+.||.+....+ ...........
T Consensus 344 ~~~----~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~--~~~i~~~i~~~-------- 409 (689)
T 3v5w_A 344 KKK----PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKD--KHEIDRMTLTM-------- 409 (689)
T ss_dssp SCC----CCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCC--HHHHHHHHHHC--------
T ss_pred CCC----CCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHH--HHHHHHhhcCC--------
Confidence 432 234589999999999864 579999999999999999999999997633221 11111110000
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCC-----HHHHH
Q 005278 646 NLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVS-----MKDAA 686 (704)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt-----~~ev~ 686 (704)
....+..++.++.+++.+||+.||++|++ +.||.
T Consensus 410 -------~~~~p~~~S~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~ 448 (689)
T 3v5w_A 410 -------AVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVK 448 (689)
T ss_dssp -------CCCCCTTSCHHHHHHHHHHTCSCGGGCTTCSSSTHHHHT
T ss_pred -------CCCCCccCCHHHHHHHHHHccCCHhHCCCCCCCCHHHHh
Confidence 01112234567889999999999999998 57764
No 23
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=100.00 E-value=3.7e-43 Score=362.48 Aligned_cols=264 Identities=25% Similarity=0.377 Sum_probs=216.9
Q ss_pred CCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEEecc
Q 005278 415 NGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQLERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVLEFM 493 (704)
Q Consensus 415 ~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 493 (704)
++|...+.||+|+||+||+|+.. +++.||+|++........+.+.+|++++++++||||+++++++.+.+..++||||+
T Consensus 10 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~ 89 (310)
T 3s95_A 10 SDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYI 89 (310)
T ss_dssp GGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred hHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEEec
Confidence 57888899999999999999965 68999999987655666778999999999999999999999999999999999999
Q ss_pred CCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCCCcc-
Q 005278 494 PNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGDDSV- 572 (704)
Q Consensus 494 ~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~~~~- 572 (704)
++|+|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.........
T Consensus 90 ~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~ 166 (310)
T 3s95_A 90 KGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLH---SMNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPE 166 (310)
T ss_dssp TTCBHHHHHHHCCTTSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEECTTSCEEECCCTTCEECC-------
T ss_pred CCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCCcCeEEECCCCCEEEeecccceeccccccccc
Confidence 999999999987777999999999999999999995 4789999999999999999999999999998775432211
Q ss_pred -----------eeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcch
Q 005278 573 -----------IQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTE 641 (704)
Q Consensus 573 -----------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (704)
......||+.|+|||++.+..++.++||||||+++|||++|..|+............
T Consensus 167 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~~------------ 234 (310)
T 3s95_A 167 GLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGL------------ 234 (310)
T ss_dssp -------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSSB------------
T ss_pred ccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHhh------------
Confidence 111346999999999999999999999999999999999999998653222110000
Q ss_pred hccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHHhhh
Q 005278 642 VVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEKFLD 698 (704)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~~ 698 (704)
..........+..++..+.+++.+||+.||++||++.|+++.|+++++....
T Consensus 235 -----~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~l~~~L~~l~~~~~~ 286 (310)
T 3s95_A 235 -----NVRGFLDRYCPPNCPPSFFPITVRCCDLDPEKRPSFVKLEHWLETLRMHLAG 286 (310)
T ss_dssp -----CHHHHHHHTCCTTCCTTHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHHH
T ss_pred -----hhhccccccCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhccC
Confidence 0000001111234456788999999999999999999999999999877654
No 24
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=100.00 E-value=2.1e-43 Score=365.92 Aligned_cols=270 Identities=24% Similarity=0.332 Sum_probs=212.0
Q ss_pred hCCCCccccccccCceEEEEEEECCCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCC----eEEEE
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLFDGTNVAIKVFNLQLERASRSFDSECEILRSIRHRNLIKIISNCCNID----FKALV 489 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~----~~~lv 489 (704)
.++|+..+.||+|+||+||+|+.. ++.||||++.... ........|+.++++++||||+++++++.... ..++|
T Consensus 23 ~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~lv 100 (322)
T 3soc_A 23 SMPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQD-KQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLI 100 (322)
T ss_dssp TEEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGGG-HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEE
T ss_pred hhhchhhheecccCceEEEEEEEC-CCEEEEEEeecCc-hHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEEE
Confidence 357889999999999999999865 7999999986542 33445677999999999999999999998754 36999
Q ss_pred EeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhc-------CCCCcEecCCCCCCeeeCCCCcEEEeeeccc
Q 005278 490 LEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHG-------HSTPMVHCDLKPNNILLDENMTAHVSDFGIS 562 (704)
Q Consensus 490 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~-------h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla 562 (704)
|||+++|+|.+++.... +++..+..++.|++.||+|||.. |+.+|+||||||+||+++.++.+||+|||++
T Consensus 101 ~e~~~~g~L~~~l~~~~--~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~DFg~a 178 (322)
T 3soc_A 101 TAFHEKGSLSDFLKANV--VSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLA 178 (322)
T ss_dssp EECCTTCBHHHHHHHCC--BCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECTTCCEEECCCTTC
T ss_pred EecCCCCCHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECCCCeEEEccCCcc
Confidence 99999999999998654 89999999999999999999542 2339999999999999999999999999999
Q ss_pred eecCCCCCcceeccccccccccCCcccCC-----CCCCcccceeeHHHHHHHHhhCCCCCCccccccc-----------c
Q 005278 563 KLLGEGDDSVIQTMTIATIGYMAPEYGSE-----GIISPKSDVYSYGILLMETFTRKKPTNEIFIGEM-----------S 626 (704)
Q Consensus 563 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~-----------~ 626 (704)
+...............||+.|+|||++.+ ..++.++|||||||++|||+||+.||.+...... .
T Consensus 179 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~ 258 (322)
T 3soc_A 179 LKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQHPS 258 (322)
T ss_dssp EEECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHHCSSCC
T ss_pred cccccccCccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhhhhccCCc
Confidence 88765444333444679999999999876 3566789999999999999999999976433211 1
Q ss_pred HHHHHHhhcCCCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHH
Q 005278 627 LKHWVKESLPDGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEK 695 (704)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~ 695 (704)
...+............ + ........++..+.+++.+||+.||++|||+.||++.|+++++.
T Consensus 259 ~~~~~~~~~~~~~~~~----~----~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l~~~ 319 (322)
T 3soc_A 259 LEDMQEVVVHKKKRPV----L----RDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQMQRL 319 (322)
T ss_dssp HHHHHHHHTTSCCCCC----C----CGGGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhcccCCCC----c----cccccccchHHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence 1222111111111000 0 11112234567799999999999999999999999999999865
No 25
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=100.00 E-value=3.7e-43 Score=370.68 Aligned_cols=262 Identities=25% Similarity=0.416 Sum_probs=215.2
Q ss_pred hCCCCccccccccCceEEEEEEEC--------CCCEEEEEEeeccc-hhhhHHHHHHHHHHHhc-CCCCCceEEeeeeeC
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF--------DGTNVAIKVFNLQL-ERASRSFDSECEILRSI-RHRNLIKIISNCCNI 483 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~--------~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~ 483 (704)
.++|...+.||+|+||.||+|+.. ++..||||+++... ....+.+.+|+++++++ +||||+++++++...
T Consensus 80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~ 159 (370)
T 2psq_A 80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD 159 (370)
T ss_dssp GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSS
T ss_pred HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccC
Confidence 467888999999999999999852 35679999997553 33456799999999999 899999999999999
Q ss_pred CeEEEEEeccCCCCHHHHHhhCC---------------CccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeee
Q 005278 484 DFKALVLEFMPNGSLEKWLYSHN---------------YFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILL 548 (704)
Q Consensus 484 ~~~~lv~e~~~~gsL~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~ 548 (704)
+..++||||+++|+|.+++.... ..+++..+..++.|++.||+||| +.+|+||||||+||++
T Consensus 160 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll 236 (370)
T 2psq_A 160 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLA---SQKCIHRDLAARNVLV 236 (370)
T ss_dssp SSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCeeccccchhhEEE
Confidence 99999999999999999998643 34789999999999999999995 4789999999999999
Q ss_pred CCCCcEEEeeeccceecCCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhh-CCCCCCccccccccH
Q 005278 549 DENMTAHVSDFGISKLLGEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFT-RKKPTNEIFIGEMSL 627 (704)
Q Consensus 549 ~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-g~~p~~~~~~~~~~~ 627 (704)
+.++.+||+|||+++...............+|+.|+|||++.+..++.++|||||||++|||+| |+.||.+.... ..
T Consensus 237 ~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~~~--~~ 314 (370)
T 2psq_A 237 TENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVE--EL 314 (370)
T ss_dssp CTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGG--GH
T ss_pred CCCCCEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCHH--HH
Confidence 9999999999999997765443333344567899999999999999999999999999999999 99999764221 11
Q ss_pred HHHHHhhcCCCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHHhh
Q 005278 628 KHWVKESLPDGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEKFL 697 (704)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~ 697 (704)
...+.... ....+..++..+.+++..||+.||++||++.|+++.|+++.....
T Consensus 315 ~~~~~~~~-----------------~~~~~~~~~~~l~~li~~~l~~dP~~Rpt~~ell~~L~~il~~~~ 367 (370)
T 2psq_A 315 FKLLKEGH-----------------RMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTLTT 367 (370)
T ss_dssp HHHHHTTC-----------------CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHhcCC-----------------CCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHhc
Confidence 11111110 011222456678899999999999999999999999999876543
No 26
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=100.00 E-value=8.4e-43 Score=356.94 Aligned_cols=250 Identities=23% Similarity=0.312 Sum_probs=207.8
Q ss_pred hCCCCccccccccCceEEEEEEE-CCCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEEec
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTL-FDGTNVAIKVFNLQLERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVLEF 492 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 492 (704)
.++|+..+.||+|+||+||+|.. .+++.||||++........+.+.+|+.++++++||||+++++++...+..++||||
T Consensus 19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~ 98 (297)
T 3fxz_A 19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEY 98 (297)
T ss_dssp GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEEEC
Confidence 46899999999999999999985 57999999999766555567789999999999999999999999999999999999
Q ss_pred cCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCCCcc
Q 005278 493 MPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGDDSV 572 (704)
Q Consensus 493 ~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~~~~ 572 (704)
+++|+|.+++.... +++..+..++.|++.|++||| +.+|+||||||+||+++.++.+||+|||++........
T Consensus 99 ~~~~~L~~~~~~~~--~~~~~~~~~~~qi~~~l~~lH---~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-- 171 (297)
T 3fxz_A 99 LAGGSLTDVVTETC--MDEGQIAAVCRECLQALEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS-- 171 (297)
T ss_dssp CTTCBHHHHHHHSC--CCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTC--
T ss_pred CCCCCHHHHHhhcC--CCHHHHHHHHHHHHHHHHHHH---hCCceeCCCCHHHEEECCCCCEEEeeCCCceecCCccc--
Confidence 99999999998653 889999999999999999995 46899999999999999999999999999987654322
Q ss_pred eeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccchhhhh
Q 005278 573 IQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLVREEQ 652 (704)
Q Consensus 573 ~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (704)
......||+.|+|||++.+..++.++|||||||++|||++|+.||........ .........+
T Consensus 172 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~-~~~~~~~~~~---------------- 234 (297)
T 3fxz_A 172 KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRA-LYLIATNGTP---------------- 234 (297)
T ss_dssp CBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHH-HHHHHHHCSC----------------
T ss_pred ccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHH-HHHHHhCCCC----------------
Confidence 23345799999999999999999999999999999999999999975321111 1111010000
Q ss_pred hhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 653 AFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 653 ~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
....+..++..+.+++.+||+.||++||+++|+++
T Consensus 235 ~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 269 (297)
T 3fxz_A 235 ELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQ 269 (297)
T ss_dssp CCSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCCCccccCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence 01112244567889999999999999999999965
No 27
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=100.00 E-value=7.3e-42 Score=352.35 Aligned_cols=282 Identities=29% Similarity=0.472 Sum_probs=228.6
Q ss_pred cccccchHHHHHHhCCCCcc------ccccccCceEEEEEEECCCCEEEEEEeeccc----hhhhHHHHHHHHHHHhcCC
Q 005278 401 TWRRTSYLDIQRATNGFNEC------NLLGTGSFGSVYKGTLFDGTNVAIKVFNLQL----ERASRSFDSECEILRSIRH 470 (704)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~------~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~----~~~~~~~~~e~~~l~~l~h 470 (704)
....+++.++..++++|... +.||+|+||.||+|.. +++.||||++.... ....+.+.+|+.++++++|
T Consensus 11 ~~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h 89 (307)
T 2nru_A 11 RFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQH 89 (307)
T ss_dssp CCEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCC
T ss_pred CCCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCC
Confidence 45678899999999999887 8899999999999985 68899999986532 2345679999999999999
Q ss_pred CCCceEEeeeeeCCeEEEEEeccCCCCHHHHHhhC--CCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeee
Q 005278 471 RNLIKIISNCCNIDFKALVLEFMPNGSLEKWLYSH--NYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILL 548 (704)
Q Consensus 471 ~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~--~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~ 548 (704)
|||+++++++.+.+..++||||+++|+|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||++
T Consensus 90 ~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dlkp~Nili 166 (307)
T 2nru_A 90 ENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLH---ENHHIHRDIKSANILL 166 (307)
T ss_dssp TTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEE
T ss_pred CCeEEEEEEEecCCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHh---cCCeecCCCCHHHEEE
Confidence 99999999999999999999999999999999743 345899999999999999999995 4689999999999999
Q ss_pred CCCCcEEEeeeccceecCCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHH
Q 005278 549 DENMTAHVSDFGISKLLGEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLK 628 (704)
Q Consensus 549 ~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~ 628 (704)
+.++.+||+|||++................||+.|+|||.+.+ .++.++||||||+++|||++|..||....... ...
T Consensus 167 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~-~~~ 244 (307)
T 2nru_A 167 DEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDEHREPQ-LLL 244 (307)
T ss_dssp CTTCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHHCCCSBCTTBSSS-BTT
T ss_pred cCCCcEEEeecccccccccccccccccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHHCCCCcccCcchH-HHH
Confidence 9999999999999987755443333445579999999998765 57899999999999999999999998643322 222
Q ss_pred HHHHhhc--CCCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHH
Q 005278 629 HWVKESL--PDGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKE 694 (704)
Q Consensus 629 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~ 694 (704)
.+..... ...+...+++.+. ..+..++..+.+++..||+.||++||++.||++.|+++.+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~~l~~ 306 (307)
T 2nru_A 245 DIKEEIEDEEKTIEDYIDKKMN------DADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTA 306 (307)
T ss_dssp HHHHHHHTTSCCHHHHSCSSCS------CCCHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHC-
T ss_pred HHHHHhhhhhhhhhhhcccccc------ccchHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhc
Confidence 2222111 1123333333221 1234567789999999999999999999999999999865
No 28
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=100.00 E-value=1.1e-43 Score=376.25 Aligned_cols=260 Identities=27% Similarity=0.428 Sum_probs=214.2
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccc-hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEEe
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL-ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVLE 491 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 491 (704)
.++|...+.||+|+||.||+|+.. +++.||||+++... ....+.+.+|++++++++||||+++++++...+..++|||
T Consensus 113 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 192 (377)
T 3cbl_A 113 HEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVME 192 (377)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred hHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEEEE
Confidence 457888899999999999999976 78999999987543 2334568899999999999999999999999999999999
Q ss_pred ccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCCCc
Q 005278 492 FMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGDDS 571 (704)
Q Consensus 492 ~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~~~ 571 (704)
|+++|+|.+++...+..+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++........
T Consensus 193 ~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~~~~ 269 (377)
T 3cbl_A 193 LVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLE---SKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVYA 269 (377)
T ss_dssp CCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCGGGCEECTTSEEE
T ss_pred cCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCcCCcccCHHHEEEcCCCcEEECcCCCceecCCCcee
Confidence 99999999999877667899999999999999999995 478999999999999999999999999999875432221
Q ss_pred ceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhh-CCCCCCccccccccHHHHHHhhcCCCcchhccccchhh
Q 005278 572 VIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFT-RKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLVRE 650 (704)
Q Consensus 572 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (704)
.......+++.|+|||++.++.++.++|||||||++|||+| |..||...... .....+...
T Consensus 270 ~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~~--~~~~~~~~~---------------- 331 (377)
T 3cbl_A 270 ASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQ--QTREFVEKG---------------- 331 (377)
T ss_dssp CCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCHH--HHHHHHHTT----------------
T ss_pred ecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHHHHcC----------------
Confidence 11222346788999999998899999999999999999998 99999764221 111111110
Q ss_pred hhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHH
Q 005278 651 EQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEK 695 (704)
Q Consensus 651 ~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~ 695 (704)
...+.+..++..+.+++..||+.||++|||+.++++.|++++++
T Consensus 332 -~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i~~~ 375 (377)
T 3cbl_A 332 -GRLPCPELCPDAVFRLMEQCWAYEPGQRPSFSTIYQELQSIRKR 375 (377)
T ss_dssp -CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred -CCCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHhh
Confidence 01112234566788999999999999999999999999999865
No 29
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=100.00 E-value=2.1e-43 Score=361.56 Aligned_cols=278 Identities=26% Similarity=0.408 Sum_probs=211.9
Q ss_pred hCCCCccccccccCceEEEEEEE-----CCCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCCCceEEeeeee--CCeE
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTL-----FDGTNVAIKVFNLQLERASRSFDSECEILRSIRHRNLIKIISNCCN--IDFK 486 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~--~~~~ 486 (704)
.++|+..+.||+|+||+||+|++ .+++.||||++........+.+.+|++++++++||||+++++++.. ....
T Consensus 9 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 88 (295)
T 3ugc_A 9 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL 88 (295)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTSC
T ss_pred HHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCce
Confidence 36788899999999999999984 3688999999986655666789999999999999999999999855 3458
Q ss_pred EEEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecC
Q 005278 487 ALVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLG 566 (704)
Q Consensus 487 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~ 566 (704)
++||||+++|+|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++...
T Consensus 89 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~~~~~~ 165 (295)
T 3ugc_A 89 KLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLG---TKRYIHRDLATRNILVENENRVKIGDFGLTKVLP 165 (295)
T ss_dssp EEEEECCTTCBHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCCCSCC---
T ss_pred EEEEEeCCCCCHHHHHHhcccccCHHHHHHHHHHHHHHHHHHh---cCCcccCCCCHhhEEEcCCCeEEEccCccccccc
Confidence 9999999999999999987777999999999999999999995 4789999999999999999999999999998775
Q ss_pred CCCCc-ceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccc
Q 005278 567 EGDDS-VIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDA 645 (704)
Q Consensus 567 ~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (704)
..... .......++..|+|||.+.+..++.++||||||+++|||+||..|+...... ...+...............
T Consensus 166 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 242 (295)
T 3ugc_A 166 QDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAE---FMRMIGNDKQGQMIVFHLI 242 (295)
T ss_dssp ----------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHHH---HHHHHCTTCCTHHHHHHHH
T ss_pred CCcceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChHH---HHhhhcCccccchhHHHHH
Confidence 43221 2223345788899999999999999999999999999999999998653211 0010000000000000000
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHHhh
Q 005278 646 NLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEKFL 697 (704)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~ 697 (704)
.........+.+..++..+.+++..||+.||++|||+.|+++.|+++++...
T Consensus 243 ~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el~~~L~~l~~~l~ 294 (295)
T 3ugc_A 243 ELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDNMA 294 (295)
T ss_dssp HHHHTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHC--
T ss_pred HHHhccCcCCCCcCcCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhcc
Confidence 0000111122334567789999999999999999999999999999987653
No 30
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=100.00 E-value=6.6e-43 Score=362.42 Aligned_cols=262 Identities=28% Similarity=0.444 Sum_probs=212.3
Q ss_pred hCCCCccccccccCceEEEEEEEC----CCCEEEEEEeeccc-hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEE
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF----DGTNVAIKVFNLQL-ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKAL 488 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~----~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 488 (704)
.++|.+.+.||+|+||.||+|+.. .+..||||++.... ....+.+.+|+.++++++||||+++++++.+.+..++
T Consensus 48 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l 127 (325)
T 3kul_A 48 ASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMI 127 (325)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEE
T ss_pred hhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEE
Confidence 357888899999999999999974 34569999997643 3445679999999999999999999999999999999
Q ss_pred EEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCC
Q 005278 489 VLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEG 568 (704)
Q Consensus 489 v~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~ 568 (704)
||||+++|+|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 128 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~ 204 (325)
T 3kul_A 128 VTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLS---DLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDD 204 (325)
T ss_dssp EEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCSSCEECC--
T ss_pred EeeCCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCcceEEECCCCCEEECCCCcccccccC
Confidence 99999999999999877667999999999999999999995 478999999999999999999999999999987543
Q ss_pred CCc-ceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhh-CCCCCCccccccccHHHHHHhhcCCCcchhcccc
Q 005278 569 DDS-VIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFT-RKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDAN 646 (704)
Q Consensus 569 ~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (704)
... .......+|+.|+|||++.+..++.++|||||||++|||++ |..||......+ ....+...
T Consensus 205 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~--~~~~~~~~------------ 270 (325)
T 3kul_A 205 PDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNRD--VISSVEEG------------ 270 (325)
T ss_dssp --CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCHHH--HHHHHHTT------------
T ss_pred ccceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCHHH--HHHHHHcC------------
Confidence 322 22233456889999999998899999999999999999999 999996632211 11111100
Q ss_pred chhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHHhh
Q 005278 647 LVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEKFL 697 (704)
Q Consensus 647 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~ 697 (704)
.....+..++..+.+++..||+.||++||++.||++.|+++.+...
T Consensus 271 -----~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~eil~~L~~l~~~~~ 316 (325)
T 3kul_A 271 -----YRLPAPMGCPHALHQLMLDCWHKDRAQRPRFSQIVSVLDALIRSPE 316 (325)
T ss_dssp -----CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSCC
T ss_pred -----CCCCCCCCcCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhCcc
Confidence 0111222456678899999999999999999999999999876544
No 31
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=100.00 E-value=1.2e-42 Score=357.66 Aligned_cols=262 Identities=26% Similarity=0.380 Sum_probs=203.6
Q ss_pred HHhCCCCccccccccCceEEEEEEECCCCEEEEEEeeccc--hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEE
Q 005278 412 RATNGFNECNLLGTGSFGSVYKGTLFDGTNVAIKVFNLQL--ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALV 489 (704)
Q Consensus 412 ~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 489 (704)
...++|++.+.||+|+||+||+|+. +|+.||||++.... ....+.+.+|++++++++||||+++++++.+.+..++|
T Consensus 34 i~~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv 112 (309)
T 3p86_A 34 IPWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIV 112 (309)
T ss_dssp CCGGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCEEE
T ss_pred CChhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceEEE
Confidence 3456888999999999999999986 58899999987543 23446789999999999999999999999999999999
Q ss_pred EeccCCCCHHHHHhhCC--CccCHHHHHHHHHHHHHHHHHHHhcCCCC--cEecCCCCCCeeeCCCCcEEEeeeccceec
Q 005278 490 LEFMPNGSLEKWLYSHN--YFLGILERLNIMIDVGLALEYLHHGHSTP--MVHCDLKPNNILLDENMTAHVSDFGISKLL 565 (704)
Q Consensus 490 ~e~~~~gsL~~~l~~~~--~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~--ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~ 565 (704)
|||+++|+|.+++.... ..+++..++.++.|++.||+|||. .+ |+||||||+||+++.++.+||+|||+++..
T Consensus 113 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~ 189 (309)
T 3p86_A 113 TEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHN---RNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLK 189 (309)
T ss_dssp EECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHT---SSSCCCCTTCCGGGEEECTTCCEEECCCC-----
T ss_pred EecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHc---CCCCEECCCCChhhEEEeCCCcEEECCCCCCccc
Confidence 99999999999998654 248999999999999999999964 56 999999999999999999999999999865
Q ss_pred CCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccc
Q 005278 566 GEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDA 645 (704)
Q Consensus 566 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (704)
.... .......||+.|+|||++.+..++.++|||||||++|||++|+.||......+ .........
T Consensus 190 ~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~~~--~~~~~~~~~---------- 255 (309)
T 3p86_A 190 ASTF--LSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQ--VVAAVGFKC---------- 255 (309)
T ss_dssp --------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCHHH--HHHHHHHSC----------
T ss_pred cccc--cccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH--HHHHHHhcC----------
Confidence 3321 12334579999999999999999999999999999999999999997632211 111110000
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHHhh
Q 005278 646 NLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEKFL 697 (704)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~ 697 (704)
.....+..++..+.+++.+||+.||++||++.|+++.|+.+.+...
T Consensus 256 ------~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~~~~ 301 (309)
T 3p86_A 256 ------KRLEIPRNLNPQVAAIIEGCWTNEPWKRPSFATIMDLLRPLIKSAV 301 (309)
T ss_dssp ------CCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC---
T ss_pred ------CCCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhCC
Confidence 0011122345678899999999999999999999999999876543
No 32
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=100.00 E-value=3e-42 Score=354.49 Aligned_cols=264 Identities=26% Similarity=0.413 Sum_probs=206.5
Q ss_pred hCCCCccccccccCceEEEEEEECCCCEEEEEEeeccc--hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEEe
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLFDGTNVAIKVFNLQL--ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVLE 491 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 491 (704)
.++|...+.||+|+||.||+|+.. ..+|+|+++... ....+.+.+|++++++++||||+++++++.. +..++|||
T Consensus 35 ~~~~~~~~~lG~G~~g~Vy~~~~~--~~~avk~~k~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-~~~~lv~e 111 (307)
T 3lb7_A 35 ASEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQ 111 (307)
T ss_dssp TTSCCEEEEEEECSSCEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEE
T ss_pred ccceEEEeEecCCCCeEEEEEEEC--CEEEEEEEecCCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcc-CcEEEEEe
Confidence 468899999999999999999854 468999886532 3345678999999999999999999998754 55789999
Q ss_pred ccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCCCc
Q 005278 492 FMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGDDS 571 (704)
Q Consensus 492 ~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~~~ 571 (704)
|+++|+|.+++......+++..+..++.|++.||+|||. .+|+||||||+||+++.++.+||+|||+++........
T Consensus 112 ~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~kl~DFg~a~~~~~~~~~ 188 (307)
T 3lb7_A 112 WCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHA---KNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGS 188 (307)
T ss_dssp CCSSCBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCSSSEEECTTSCEEECCCCSSCC-------
T ss_pred cCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHh---CCEeeCCCChhhEEEcCCCCEEEccCCCceeccccccc
Confidence 999999999998777779999999999999999999954 68999999999999999999999999999866443333
Q ss_pred ceeccccccccccCCcccC---CCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccch
Q 005278 572 VIQTMTIATIGYMAPEYGS---EGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLV 648 (704)
Q Consensus 572 ~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (704)
.......||+.|+|||++. +..++.++|||||||++|||++|+.||......+................
T Consensus 189 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~-------- 260 (307)
T 3lb7_A 189 QQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGRGYASPDLS-------- 260 (307)
T ss_dssp -----CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHHTCCCCCST--------
T ss_pred ccccCCCCCcceECcceeeccCCCCCCchhhHHHHHHHHHHHHhCCCCCccCCcHHHHHHHHhcCCCCcchh--------
Confidence 3334457999999999875 66788999999999999999999999976432221111111111111010
Q ss_pred hhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHHhh
Q 005278 649 REEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEKFL 697 (704)
Q Consensus 649 ~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~ 697 (704)
.....++..+.+++..||+.+|++||++.|+++.|+.+++.+.
T Consensus 261 ------~~~~~~~~~l~~li~~~l~~~p~~RPs~~~il~~l~~l~~~~p 303 (307)
T 3lb7_A 261 ------KLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLP 303 (307)
T ss_dssp ------TSCSSSCHHHHHHHHHHSCSSSTTSCCHHHHHHHHHHHHTTCC
T ss_pred ------hhhcCCcHHHHHHHHHHhhCChhhCcCHHHHHHHHHHHHhhcc
Confidence 1112345678899999999999999999999999999987654
No 33
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=100.00 E-value=1.5e-42 Score=350.01 Aligned_cols=259 Identities=26% Similarity=0.349 Sum_probs=213.2
Q ss_pred hCCCCccccccccCceEEEEEEECCCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEEecc
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLFDGTNVAIKVFNLQLERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVLEFM 493 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 493 (704)
.++|+..+.||+|+||.||+|+..++..||||++.... ...+.+.+|++++++++||||+++++++.+....++||||+
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 85 (268)
T 3sxs_A 7 REEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGS-MSEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYI 85 (268)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTT-BCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECC
T ss_pred hhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCC-CcHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEEcc
Confidence 46788899999999999999998888899999987543 23467899999999999999999999999999999999999
Q ss_pred CCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCCCcce
Q 005278 494 PNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGDDSVI 573 (704)
Q Consensus 494 ~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~~~~~ 573 (704)
++|+|.+++......+++..++.++.|++.|++||| +.+|+||||||+||+++.++.+||+|||++........ ..
T Consensus 86 ~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~-~~ 161 (268)
T 3sxs_A 86 SNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLE---SHQFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQY-VS 161 (268)
T ss_dssp TTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHH---HTTEEESSCSGGGEEECTTCCEEECCTTCEEECCTTCE-EE
T ss_pred CCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCcCcceEEECCCCCEEEccCccceecchhhh-hc
Confidence 999999999877667999999999999999999995 47899999999999999999999999999987654322 22
Q ss_pred eccccccccccCCcccCCCCCCcccceeeHHHHHHHHhh-CCCCCCccccccccHHHHHHhhcCCCcchhccccchhhhh
Q 005278 574 QTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFT-RKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLVREEQ 652 (704)
Q Consensus 574 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (704)
.....+|+.|+|||.+.+..++.++||||||+++|||+| |+.||...... ..........
T Consensus 162 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~-----~~~~~~~~~~-------------- 222 (268)
T 3sxs_A 162 SVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNS-----EVVLKVSQGH-------------- 222 (268)
T ss_dssp CCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHH-----HHHHHHHTTC--------------
T ss_pred ccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccChH-----HHHHHHHcCC--------------
Confidence 334457788999999998889999999999999999999 99999753221 1111100000
Q ss_pred hhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHHh
Q 005278 653 AFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEKF 696 (704)
Q Consensus 653 ~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~~ 696 (704)
....+..++..+.+++..||+.||++||++.|+++.|++++++.
T Consensus 223 ~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~~~ 266 (268)
T 3sxs_A 223 RLYRPHLASDTIYQIMYSCWHELPEKRPTFQQLLSSIEPLREKD 266 (268)
T ss_dssp CCCCCTTSCHHHHHHHHHTTCSSGGGSCCHHHHHHHHGGGCC--
T ss_pred CCCCCCcChHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhhcc
Confidence 00111123456889999999999999999999999999987653
No 34
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=100.00 E-value=6.6e-42 Score=354.23 Aligned_cols=261 Identities=21% Similarity=0.278 Sum_probs=211.8
Q ss_pred cccchHHHHHHhCC----------CCccccccccCceEEEEEEEC-CCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCC
Q 005278 403 RRTSYLDIQRATNG----------FNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQLERASRSFDSECEILRSIRHR 471 (704)
Q Consensus 403 ~~~~~~~~~~~~~~----------~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ 471 (704)
..+++.+++.+++. |+..+.||+|+||.||+|+.. +|+.||||++........+.+.+|+.++++++||
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ 102 (321)
T 2c30_A 23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHF 102 (321)
T ss_dssp --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCT
T ss_pred CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCC
Confidence 34666777666653 666779999999999999976 7999999999766555567789999999999999
Q ss_pred CCceEEeeeeeCCeEEEEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCC
Q 005278 472 NLIKIISNCCNIDFKALVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDEN 551 (704)
Q Consensus 472 niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~ 551 (704)
||+++++++...+..++||||+++|+|.+++... .+++..+..++.|++.||+|||. .+|+||||||+||+++.+
T Consensus 103 niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~l~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~ 177 (321)
T 2c30_A 103 NVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQV--RLNEEQIATVCEAVLQALAYLHA---QGVIHRDIKSDSILLTLD 177 (321)
T ss_dssp TBCCEEEEEEETTEEEEEECCCCSCBHHHHHTTC--CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTT
T ss_pred CcceEEEEEEECCEEEEEEecCCCCCHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEECCC
Confidence 9999999999999999999999999999998754 48999999999999999999964 689999999999999999
Q ss_pred CcEEEeeeccceecCCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHH
Q 005278 552 MTAHVSDFGISKLLGEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWV 631 (704)
Q Consensus 552 ~~~kl~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~ 631 (704)
+.+||+|||++........ ......||+.|+|||++.+..++.++||||||+++|||++|+.||..... ......+
T Consensus 178 ~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~~--~~~~~~~ 253 (321)
T 2c30_A 178 GRVKLSDFGFCAQISKDVP--KRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSP--VQAMKRL 253 (321)
T ss_dssp CCEEECCCTTCEECCSSSC--CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH--HHHHHHH
T ss_pred CcEEEeeeeeeeecccCcc--ccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHH
Confidence 9999999999987654322 22345799999999999999999999999999999999999999975321 1111111
Q ss_pred HhhcCCCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 632 KESLPDGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
....+.. . .....++..+.+++.+||+.||++||++.|+++
T Consensus 254 ~~~~~~~--------~-------~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 294 (321)
T 2c30_A 254 RDSPPPK--------L-------KNSHKVSPVLRDFLERMLVRDPQERATAQELLD 294 (321)
T ss_dssp HHSSCCC--------C-------TTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred hcCCCCC--------c-------CccccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 1111110 0 111233566889999999999999999999976
No 35
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=100.00 E-value=1.3e-42 Score=366.59 Aligned_cols=261 Identities=26% Similarity=0.457 Sum_probs=202.2
Q ss_pred hCCCCccccccccCceEEEEEEEC----CCCEEEEEEeeccc-hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEE
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF----DGTNVAIKVFNLQL-ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKAL 488 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~----~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 488 (704)
.++|+..+.||+|+||.||+|+.. ++..||||+++... ....+.+.+|++++++++||||+++++++.+.+..++
T Consensus 44 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 123 (373)
T 2qol_A 44 ATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMI 123 (373)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEE
T ss_pred HhhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEE
Confidence 357899999999999999999864 57789999987543 3445679999999999999999999999999999999
Q ss_pred EEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCC
Q 005278 489 VLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEG 568 (704)
Q Consensus 489 v~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~ 568 (704)
||||+++|+|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 124 v~e~~~~~sL~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~ 200 (373)
T 2qol_A 124 VTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLS---DMGYVHRDLAARNILINSNLVCKVSDFGLGRVLEDD 200 (373)
T ss_dssp EEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCC---------
T ss_pred EEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCcceEEEcCCCCEEECcCccccccccC
Confidence 99999999999999987777999999999999999999996 468999999999999999999999999999876543
Q ss_pred CCc-ceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhh-CCCCCCccccccccHHHHHHhhcCCCcchhcccc
Q 005278 569 DDS-VIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFT-RKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDAN 646 (704)
Q Consensus 569 ~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (704)
... .......+++.|+|||++.+..++.++|||||||++|||++ |+.||...... .....+...
T Consensus 201 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~~--~~~~~i~~~------------ 266 (373)
T 2qol_A 201 PEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQ--DVIKAVDEG------------ 266 (373)
T ss_dssp -------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCHH--HHHHHHHTT------------
T ss_pred CccceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHHHHcC------------
Confidence 221 11222345788999999999999999999999999999998 99999653221 111111100
Q ss_pred chhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHHh
Q 005278 647 LVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEKF 696 (704)
Q Consensus 647 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~~ 696 (704)
. ..+.+..++..+.+++..||+.||++||++.||++.|+++.+..
T Consensus 267 ~-----~~~~~~~~~~~l~~li~~cl~~dp~~RPs~~~i~~~L~~~~~~~ 311 (373)
T 2qol_A 267 Y-----RLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKLIRNP 311 (373)
T ss_dssp E-----ECCCCTTCBHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCG
T ss_pred C-----CCCCCccccHHHHHHHHHHhCcChhhCcCHHHHHHHHHHHHhCc
Confidence 0 01112245667899999999999999999999999999987654
No 36
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=100.00 E-value=1.4e-41 Score=349.31 Aligned_cols=265 Identities=25% Similarity=0.395 Sum_probs=208.4
Q ss_pred hCCCCccccccccCceEEEEEEECCCCEEEEEEeeccchhhhHHHHHHHHHHHh--cCCCCCceEEeeeee----CCeEE
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLFDGTNVAIKVFNLQLERASRSFDSECEILRS--IRHRNLIKIISNCCN----IDFKA 487 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~--l~h~niv~l~~~~~~----~~~~~ 487 (704)
.++|+..+.||+|+||+||+|+. +++.||||++... ....+..|.+++.. ++||||+++++++.. ....+
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~ 82 (301)
T 3q4u_A 7 ARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSR---DEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLW 82 (301)
T ss_dssp GGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEE
T ss_pred cCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEeccc---cchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeE
Confidence 46899999999999999999987 6899999998643 34456667777776 799999999998754 34578
Q ss_pred EEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhc-----CCCCcEecCCCCCCeeeCCCCcEEEeeeccc
Q 005278 488 LVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHG-----HSTPMVHCDLKPNNILLDENMTAHVSDFGIS 562 (704)
Q Consensus 488 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~-----h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla 562 (704)
+||||+++|+|.++++.. .+++..++.++.|++.|++|||.. ++.+|+||||||+||+++.++.+||+|||++
T Consensus 83 lv~e~~~~g~L~~~l~~~--~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~a 160 (301)
T 3q4u_A 83 LITHYHEMGSLYDYLQLT--TLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLA 160 (301)
T ss_dssp EEECCCTTCBHHHHHTTC--CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTC
T ss_pred EehhhccCCCHHHHHhhc--ccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCeecCCCChHhEEEcCCCCEEEeeCCCe
Confidence 999999999999999654 489999999999999999999731 2789999999999999999999999999999
Q ss_pred eecCCCCCcc--eeccccccccccCCcccCCC------CCCcccceeeHHHHHHHHhhC----------CCCCCcccccc
Q 005278 563 KLLGEGDDSV--IQTMTIATIGYMAPEYGSEG------IISPKSDVYSYGILLMETFTR----------KKPTNEIFIGE 624 (704)
Q Consensus 563 ~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~s~Gv~l~el~tg----------~~p~~~~~~~~ 624 (704)
+......... ......||+.|+|||++.+. .++.++|||||||++|||+|| +.||.......
T Consensus 161 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~~~~~ 240 (301)
T 3q4u_A 161 VMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPND 240 (301)
T ss_dssp EEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSS
T ss_pred eecccccccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccccccccccccccCCCC
Confidence 8765433221 12234799999999998776 455799999999999999999 88887655554
Q ss_pred ccHHHHHHhhcCCCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHh
Q 005278 625 MSLKHWVKESLPDGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKI 692 (704)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~ 692 (704)
................... +.......++..+.+++..||+.||++|||+.||++.|+++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i 300 (301)
T 3q4u_A 241 PSFEDMRKVVCVDQQRPNI--------PNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKI 300 (301)
T ss_dssp CCHHHHHHHHTTSCCCCCC--------CGGGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred cchhhhhHHHhccCCCCCC--------ChhhccCccHHHHHHHHHHHhhcChhhCCCHHHHHHHHhcc
Confidence 4444443322211111100 01112235678899999999999999999999999999876
No 37
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=1.2e-42 Score=350.82 Aligned_cols=257 Identities=26% Similarity=0.388 Sum_probs=212.8
Q ss_pred CCCCccccccccCceEEEEEEECCCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEEeccC
Q 005278 415 NGFNECNLLGTGSFGSVYKGTLFDGTNVAIKVFNLQLERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVLEFMP 494 (704)
Q Consensus 415 ~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~ 494 (704)
++|+..+.||+|+||.||+|+..+++.||+|++.... ...+.+.+|++++++++||||+++++++.+....++||||++
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~ 88 (269)
T 4hcu_A 10 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGA-MSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFME 88 (269)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECCT
T ss_pred hhceeeheecCCCccEEEEEEecCCCeEEEEEecccc-cCHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEeCC
Confidence 5788889999999999999998889999999987543 234679999999999999999999999999999999999999
Q ss_pred CCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCCCccee
Q 005278 495 NGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGDDSVIQ 574 (704)
Q Consensus 495 ~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~~~~~~ 574 (704)
+|+|.+++......+++..++.++.|++.|++||| +.+|+||||||+||+++.++.+||+|||+++...... ....
T Consensus 89 ~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~-~~~~ 164 (269)
T 4hcu_A 89 HGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ-YTSS 164 (269)
T ss_dssp TCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHH-HHST
T ss_pred CCcHHHHHHhcCcccCHHHHHHHHHHHHHHHHHHH---hCCeecCCcchheEEEcCCCCEEeccccccccccccc-cccc
Confidence 99999999877777999999999999999999995 5789999999999999999999999999998664321 1122
Q ss_pred ccccccccccCCcccCCCCCCcccceeeHHHHHHHHhh-CCCCCCccccccccHHHHHHhhcCCCcchhccccchhhhhh
Q 005278 575 TMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFT-RKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLVREEQA 653 (704)
Q Consensus 575 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (704)
....+|+.|+|||++.+..++.++||||+|+++|||++ |+.||...... .....+.....
T Consensus 165 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~~--~~~~~~~~~~~----------------- 225 (269)
T 4hcu_A 165 TGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNS--EVVEDISTGFR----------------- 225 (269)
T ss_dssp TSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH--HHHHHHHTTCC-----------------
T ss_pred cCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCHH--HHHHHHhcCcc-----------------
Confidence 33457888999999998899999999999999999999 99999763221 11111111000
Q ss_pred hhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHH
Q 005278 654 FSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEK 695 (704)
Q Consensus 654 ~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~ 695 (704)
...+..++..+.+++..||+.||++||+++|+++.|+++.++
T Consensus 226 ~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~l~~~ 267 (269)
T 4hcu_A 226 LYKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAES 267 (269)
T ss_dssp CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred CCCCCcCCHHHHHHHHHHccCCcccCcCHHHHHHHHHHHHHc
Confidence 011112345688999999999999999999999999998764
No 38
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=100.00 E-value=5.1e-42 Score=355.24 Aligned_cols=248 Identities=22% Similarity=0.334 Sum_probs=204.6
Q ss_pred HhCCCCccccccccCceEEEEEEE-CCCCEEEEEEeeccc--hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEE
Q 005278 413 ATNGFNECNLLGTGSFGSVYKGTL-FDGTNVAIKVFNLQL--ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALV 489 (704)
Q Consensus 413 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 489 (704)
..++|...+.||+|+||.||+|+. .+|+.||||++.... ....+.+.+|+++++.++||||+++++++...+..++|
T Consensus 13 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv 92 (328)
T 3fe3_A 13 HIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLI 92 (328)
T ss_dssp EETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEE
Confidence 346899999999999999999996 579999999997543 23456788999999999999999999999999999999
Q ss_pred EeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCC
Q 005278 490 LEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGD 569 (704)
Q Consensus 490 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~ 569 (704)
|||+++|+|.+++...+ .+++..+..++.|++.|++||| +.+|+||||||+||+++.++.+||+|||++.......
T Consensus 93 ~e~~~~~~L~~~l~~~~-~l~~~~~~~~~~qi~~al~~lH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~ 168 (328)
T 3fe3_A 93 MEYASGGEVFDYLVAHG-RMKEKEARSKFRQIVSAVQYCH---QKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGG 168 (328)
T ss_dssp ECCCTTCBHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECSTTCCGGGSSSC
T ss_pred EECCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCEeccCCCHHHEEEcCCCCEEEeeccCceecCCCC
Confidence 99999999999997654 3899999999999999999995 4689999999999999999999999999998764432
Q ss_pred CcceeccccccccccCCcccCCCCCC-cccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccch
Q 005278 570 DSVIQTMTIATIGYMAPEYGSEGIIS-PKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLV 648 (704)
Q Consensus 570 ~~~~~~~~~gt~~y~aPE~~~~~~~~-~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (704)
......||+.|+|||++.+..+. .++||||+||++|||++|+.||.+... ..........
T Consensus 169 ---~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~-----~~~~~~i~~~----------- 229 (328)
T 3fe3_A 169 ---KLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNL-----KELRERVLRG----------- 229 (328)
T ss_dssp ---GGGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHHHHC-----------
T ss_pred ---ccccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCCH-----HHHHHHHHhC-----------
Confidence 23445799999999998887765 799999999999999999999976321 1111111000
Q ss_pred hhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 649 REEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 649 ~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
....+..++..+.+++.+||+.||++|||+.|+++
T Consensus 230 ----~~~~p~~~s~~~~~li~~~L~~dP~~R~t~~eil~ 264 (328)
T 3fe3_A 230 ----KYRIPFYMSTDCENLLKRFLVLNPIKRGTLEQIMK 264 (328)
T ss_dssp ----CCCCCTTSCHHHHHHHHHHCCSSTTTSCCHHHHTT
T ss_pred ----CCCCCCCCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 00111233566789999999999999999999965
No 39
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=100.00 E-value=1.7e-42 Score=365.39 Aligned_cols=268 Identities=25% Similarity=0.382 Sum_probs=215.8
Q ss_pred HHHHHHhCCCCccccccccCceEEEEEEE------CCCCEEEEEEeeccc-hhhhHHHHHHHHHHHhc-CCCCCceEEee
Q 005278 408 LDIQRATNGFNECNLLGTGSFGSVYKGTL------FDGTNVAIKVFNLQL-ERASRSFDSECEILRSI-RHRNLIKIISN 479 (704)
Q Consensus 408 ~~~~~~~~~~~~~~~ig~G~~g~V~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv~l~~~ 479 (704)
.+.....++|...+.||+|+||.||+|++ .+++.||||++.... ....+.+.+|+++++++ +||||++++++
T Consensus 15 ~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~~~~ 94 (359)
T 3vhe_A 15 SKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGA 94 (359)
T ss_dssp HHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred ccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeeeeee
Confidence 34445668899999999999999999974 246889999997643 33456799999999999 79999999999
Q ss_pred eeeCC-eEEEEEeccCCCCHHHHHhhCCC---------------------------------------------------
Q 005278 480 CCNID-FKALVLEFMPNGSLEKWLYSHNY--------------------------------------------------- 507 (704)
Q Consensus 480 ~~~~~-~~~lv~e~~~~gsL~~~l~~~~~--------------------------------------------------- 507 (704)
+.+.+ ..++||||+++|+|.+++.....
T Consensus 95 ~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (359)
T 3vhe_A 95 CTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKSLS 174 (359)
T ss_dssp ECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC---------------------------------------------
T ss_pred eecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccccccccccccccccc
Confidence 88755 48999999999999999985432
Q ss_pred --------------ccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCCCcce
Q 005278 508 --------------FLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGDDSVI 573 (704)
Q Consensus 508 --------------~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~~~~~ 573 (704)
.+++..++.++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++..........
T Consensus 175 ~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH---~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~ 251 (359)
T 3vhe_A 175 DVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVR 251 (359)
T ss_dssp ---------CTTTTCBCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCTTCEE
T ss_pred hhhhcccccchhccccCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChhhEEEcCCCcEEEEeccceeeecccccchh
Confidence 2889999999999999999995 46899999999999999999999999999987755444444
Q ss_pred eccccccccccCCcccCCCCCCcccceeeHHHHHHHHhh-CCCCCCccccccccHHHHHHhhcCCCcchhccccchhhhh
Q 005278 574 QTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFT-RKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLVREEQ 652 (704)
Q Consensus 574 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (704)
.....||+.|+|||++.+..++.++|||||||++|||+| |+.||.+....+. ..........
T Consensus 252 ~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~-~~~~~~~~~~---------------- 314 (359)
T 3vhe_A 252 KGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE-FCRRLKEGTR---------------- 314 (359)
T ss_dssp C--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHH-HHHHHHHTCC----------------
T ss_pred ccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhHH-HHHHHHcCCC----------------
Confidence 455678999999999999999999999999999999998 9999976432221 1111111100
Q ss_pred hhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHHh
Q 005278 653 AFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEKF 696 (704)
Q Consensus 653 ~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~~ 696 (704)
...+..++..+.+++..||+.||++||++.|+++.|+++.+..
T Consensus 315 -~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~ 357 (359)
T 3vhe_A 315 -MRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQAN 357 (359)
T ss_dssp -CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred -CCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHHHHh
Confidence 1111234567889999999999999999999999999987654
No 40
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.4e-42 Score=359.58 Aligned_cols=250 Identities=25% Similarity=0.336 Sum_probs=196.6
Q ss_pred HhCCCCccccccccCceEEEEEEE-CCCCEEEEEEeeccc-hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEE
Q 005278 413 ATNGFNECNLLGTGSFGSVYKGTL-FDGTNVAIKVFNLQL-ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVL 490 (704)
Q Consensus 413 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 490 (704)
..++|+..+.||+|+||+||+|+. .+|+.||||++.... ......+.+|++++++++||||+++++++...+..++||
T Consensus 8 l~~~y~i~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~Ei~~l~~l~hpnIv~l~~~~~~~~~~~lv~ 87 (347)
T 3zgw_A 8 LLKYYELHETIGTGGFAKVKLACHILTGEMVAIKIMDKNTLGSDLPRIKTEIEALKNLRHQHICQLYHVLETANKIFMVL 87 (347)
T ss_dssp TTTTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESSCC---CCHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HhcCeEEEEEEEcCCCeEEEEEEECCCCCEEEEEEEEccccchHHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEEE
Confidence 457899999999999999999985 579999999987543 234567899999999999999999999999999999999
Q ss_pred eccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCCC
Q 005278 491 EFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGDD 570 (704)
Q Consensus 491 e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~~ 570 (704)
||+++|+|.+++...+ .+++..+..++.|++.|++||| +.+|+||||||+||++++++.+||+|||++........
T Consensus 88 E~~~gg~L~~~l~~~~-~l~~~~~~~i~~qi~~aL~~LH---~~givHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~~~ 163 (347)
T 3zgw_A 88 EYCPGGELFDYIISQD-RLSEEETRVVFRQIVSAVAYVH---SQGYAHRDLKPENLLFDEYHKLKLIDFGLCAKPKGNKD 163 (347)
T ss_dssp ECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBC------
T ss_pred eCCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCccHHHEEEcCCCCEEEEeccCcccccCCCC
Confidence 9999999999997654 3899999999999999999995 46899999999999999999999999999986543222
Q ss_pred cceeccccccccccCCcccCCCCC-CcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccchh
Q 005278 571 SVIQTMTIATIGYMAPEYGSEGII-SPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLVR 649 (704)
Q Consensus 571 ~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (704)
.......||+.|+|||++.+..+ +.++||||+||++|||++|..||.+... ..........
T Consensus 164 -~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~~-----~~~~~~i~~~------------ 225 (347)
T 3zgw_A 164 -YHLQTCCGSLAYAAPELIQGKSYLGSEADVWSMGILLYVLMCGFLPFDDDNV-----MALYKKIMRG------------ 225 (347)
T ss_dssp ---------CGGGCCHHHHTTC---CCHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHHHHT------------
T ss_pred -ccccccCCccCccCHHHHcCCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCH-----HHHHHHHHcC------------
Confidence 22334579999999999988775 8899999999999999999999976211 1111110000
Q ss_pred hhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 650 EEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 650 ~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
....+..++..+.+++.+||+.||++|||++|+++
T Consensus 226 ---~~~~p~~~s~~~~~li~~~L~~dP~~Rps~~eil~ 260 (347)
T 3zgw_A 226 ---KYDVPKWLSPSSILLLQQMLQVDPKKRISMKNLLN 260 (347)
T ss_dssp ---CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred ---CCCCCCCCCHHHHHHHHHHcccCHhHCcCHHHHhc
Confidence 00111223456788999999999999999999975
No 41
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=100.00 E-value=4.4e-42 Score=355.74 Aligned_cols=253 Identities=21% Similarity=0.318 Sum_probs=205.4
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccch-hhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEEe
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQLE-RASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVLE 491 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 491 (704)
.++|++.+.||+|+||+||+|+.. +++.||||++..... ...+.+.+|+.+++.++||||+++++++.+.+..++|||
T Consensus 6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e 85 (323)
T 3tki_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE 85 (323)
T ss_dssp TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEE
Confidence 368999999999999999999865 799999999865432 234568899999999999999999999999999999999
Q ss_pred ccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCCCc
Q 005278 492 FMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGDDS 571 (704)
Q Consensus 492 ~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~~~ 571 (704)
|+++|+|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++..+......
T Consensus 86 ~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~LH---~~givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~ 161 (323)
T 3tki_A 86 YCSGGELFDRIEPDI-GMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRE 161 (323)
T ss_dssp CCTTEEGGGGSBTTT-BCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEE
T ss_pred cCCCCcHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCccccccchHHEEEeCCCCEEEEEeeccceeccCCcc
Confidence 999999999987553 4899999999999999999995 578999999999999999999999999999876433333
Q ss_pred ceeccccccccccCCcccCCCCC-CcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccchhh
Q 005278 572 VIQTMTIATIGYMAPEYGSEGII-SPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLVRE 650 (704)
Q Consensus 572 ~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (704)
.......||+.|+|||++.+..+ +.++|||||||++|||++|+.||............|......
T Consensus 162 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~-------------- 227 (323)
T 3tki_A 162 RLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTY-------------- 227 (323)
T ss_dssp CCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHHHHHHHTTCTT--------------
T ss_pred cccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhccccc--------------
Confidence 33345579999999999877665 778999999999999999999998754433333333221110
Q ss_pred hhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 651 EQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 651 ~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
......++..+.+++.+||+.||++|||+.|+++
T Consensus 228 ---~~~~~~~~~~~~~li~~~L~~dP~~R~t~~eil~ 261 (323)
T 3tki_A 228 ---LNPWKKIDSAPLALLHKILVENPSARITIPDIKK 261 (323)
T ss_dssp ---STTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred ---CCccccCCHHHHHHHHHHccCChhhCcCHHHHhh
Confidence 0111234556788999999999999999999954
No 42
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5e-41 Score=388.64 Aligned_cols=333 Identities=33% Similarity=0.499 Sum_probs=266.7
Q ss_pred CCCCCCEEecCCCcCcccCCccccCCCCCCEEeccCccccccCchh-hcCCCCCCEEecccccCCCcccchhhc------
Q 005278 4 MLPNLKYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFSGLIPNT-FGNLGSLQVLSLAYNYLMTESSAAKWN------ 76 (704)
Q Consensus 4 ~l~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~~~------ 76 (704)
.+++|++|+|++|.+++.+|..|+++++|++|+|++|.+++.+|.. |.++++|++|+|++|.++.........
T Consensus 292 ~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~ 371 (768)
T 3rgz_A 292 ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL 371 (768)
T ss_dssp TCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCS
T ss_pred hcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCc
Confidence 4599999999999999999999999999999999999999666655 999999999999999987432221100
Q ss_pred ------------ccccCCC--CCCCcEEEccCCCCcccCChhhhhcccccceEEecCCcccccCChhhhcCCCCCEEEcc
Q 005278 77 ------------FLSSLTN--CRNLTVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLN 142 (704)
Q Consensus 77 ------------~~~~~~~--l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 142 (704)
.+..+.. +++|++|+|++|++.+..|..+..+. +|++|++++|.+++.+|..++++++|++|+++
T Consensus 372 ~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 450 (768)
T 3rgz_A 372 TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS-ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 450 (768)
T ss_dssp EEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCT-TCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred EEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCC-CCCEEECcCCcccCcccHHHhcCCCCCEEECC
Confidence 1222222 56677777777777777777777664 68888888888887888888888888888888
Q ss_pred CCcCccccChhhcCCCCcCeeeccCcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCC
Q 005278 143 GCDLNGTIPTAVGRLRRLQGLYLHGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTM 222 (704)
Q Consensus 143 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 222 (704)
+|.+.+.+|..+..+++|++|++++|++++.+|..+..+++|++|+|++|++++.+|..+..+++|+.|++++|.+++.+
T Consensus 451 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 530 (768)
T 3rgz_A 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 530 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEEC
T ss_pred CCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcC
Confidence 88888778888888888888888888888778888888888888888888888888888888888888888888888888
Q ss_pred CCcccCCccccEEEecCcccCCCCCccc----------------------------------------------------
Q 005278 223 PSSFGSLEYVLYINLSANSLNGSLPSNI---------------------------------------------------- 250 (704)
Q Consensus 223 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~---------------------------------------------------- 250 (704)
|..+..+++|+.|++++|.+.+.+|..+
T Consensus 531 p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 610 (768)
T 3rgz_A 531 PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 610 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGT
T ss_pred CHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccc
Confidence 8888888888888888888776666433
Q ss_pred ------------------ccCcCCcEEEeecCccCCCCCCCcCCCCCcceeeccCceeeccCCcccccccccceEEeccc
Q 005278 251 ------------------QNLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSLADNQFQGPVPKSFGSLISLESLDLSRN 312 (704)
Q Consensus 251 ------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N 312 (704)
+.+++|+.|++++|+++|.+|..++.+++|+.|+|++|+++|.+|..++++++|+.|||++|
T Consensus 611 ~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N 690 (768)
T 3rgz_A 611 NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 690 (768)
T ss_dssp CCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred cccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCC
Confidence 33467888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCCCCCCCcccccccCcccccCCC
Q 005278 313 NLSGEIPKNFSAQSFLSNYALCGPA 337 (704)
Q Consensus 313 ~l~~~~p~~~~~~~~l~~~~l~g~~ 337 (704)
+++|.+|..+..++.+..+.+.+++
T Consensus 691 ~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 691 KLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp CCEECCCGGGGGCCCCSEEECCSSE
T ss_pred cccCcCChHHhCCCCCCEEECcCCc
Confidence 8888888888877777776666654
No 43
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=100.00 E-value=5.5e-42 Score=367.09 Aligned_cols=263 Identities=20% Similarity=0.240 Sum_probs=209.2
Q ss_pred chHHHHHHhCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccch---hhhHHHHHHHHHHHhcCCCCCceEEeeee
Q 005278 406 SYLDIQRATNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQLE---RASRSFDSECEILRSIRHRNLIKIISNCC 481 (704)
Q Consensus 406 ~~~~~~~~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~ 481 (704)
.+.+++...++|+..++||+|+||+||+|+.. +++.||+|++..... .....+.+|+.++..++||||+++++++.
T Consensus 65 ~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~ 144 (437)
T 4aw2_A 65 KVKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQ 144 (437)
T ss_dssp HHHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEE
T ss_pred hhhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEe
Confidence 34555666789999999999999999999976 588999999975321 22344889999999999999999999999
Q ss_pred eCCeEEEEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeecc
Q 005278 482 NIDFKALVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGI 561 (704)
Q Consensus 482 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgl 561 (704)
+.+..++||||+++|+|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+
T Consensus 145 ~~~~~~lV~Ey~~gg~L~~~l~~~~~~l~e~~~~~~~~qi~~aL~~LH---~~giiHrDLKp~NILl~~~g~vkL~DFGl 221 (437)
T 4aw2_A 145 DDNNLYLVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIAIDSVH---QLHYVHRDIKPDNILMDMNGHIRLADFGS 221 (437)
T ss_dssp CSSEEEEEECCCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTT
T ss_pred eCCEEEEEEecCCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHH---hCCeEecccCHHHeeEcCCCCEEEcchhh
Confidence 999999999999999999999876667999999999999999999995 47899999999999999999999999999
Q ss_pred ceecCCCCCcceeccccccccccCCcccC-----CCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcC
Q 005278 562 SKLLGEGDDSVIQTMTIATIGYMAPEYGS-----EGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLP 636 (704)
Q Consensus 562 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~ 636 (704)
|+....... .......||+.|+|||++. ...++.++|||||||++|||++|+.||.+....+ .+.........
T Consensus 222 a~~~~~~~~-~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~~~~-~~~~i~~~~~~ 299 (437)
T 4aw2_A 222 CLKLMEDGT-VQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVE-TYGKIMNHKER 299 (437)
T ss_dssp CEECCTTSC-EECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHH-HHHHHHTHHHH
T ss_pred hhhcccCCC-cccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCChhH-HHHhhhhcccc
Confidence 987654322 2233457999999999986 5678999999999999999999999997632111 11111100000
Q ss_pred CCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCC--CCCHHHHHH
Q 005278 637 DGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQ--RVSMKDAAA 687 (704)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~--Rpt~~ev~~ 687 (704)
..+ ......++..+.+++.+|+..+|++ ||+++|+++
T Consensus 300 ~~~--------------p~~~~~~s~~~~dLi~~lL~~~~~r~~r~~~~eil~ 338 (437)
T 4aw2_A 300 FQF--------------PTQVTDVSENAKDLIRRLICSREHRLGQNGIEDFKK 338 (437)
T ss_dssp CCC--------------CSSCCCSCHHHHHHHHTTSSCGGGCTTTTTTHHHHT
T ss_pred ccC--------------CcccccCCHHHHHHHHHHhcccccccCCCCHHHHhC
Confidence 000 0001124567888999999988888 999999854
No 44
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=100.00 E-value=6.4e-42 Score=363.39 Aligned_cols=263 Identities=26% Similarity=0.409 Sum_probs=215.7
Q ss_pred hCCCCccccccccCceEEEEEEEC--------CCCEEEEEEeeccc-hhhhHHHHHHHHHHHhc-CCCCCceEEeeeeeC
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF--------DGTNVAIKVFNLQL-ERASRSFDSECEILRSI-RHRNLIKIISNCCNI 483 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~--------~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~ 483 (704)
.++|...+.||+|+||.||+|+.. ++..||||++.... ....+.+.+|+++++++ +||||+++++++...
T Consensus 68 ~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~ 147 (382)
T 3tt0_A 68 RDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD 147 (382)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred hhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeeccC
Confidence 467888999999999999999852 23579999987653 33456789999999999 999999999999999
Q ss_pred CeEEEEEeccCCCCHHHHHhhCC---------------CccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeee
Q 005278 484 DFKALVLEFMPNGSLEKWLYSHN---------------YFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILL 548 (704)
Q Consensus 484 ~~~~lv~e~~~~gsL~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~ 548 (704)
+..++||||+++|+|.+++.... ..+++..+..++.|++.||+||| +.+|+||||||+||++
T Consensus 148 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll 224 (382)
T 3tt0_A 148 GPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLA---SKKCIHRDLAARNVLV 224 (382)
T ss_dssp SSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEE
T ss_pred CceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCcceEEE
Confidence 99999999999999999998643 35899999999999999999995 4689999999999999
Q ss_pred CCCCcEEEeeeccceecCCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhh-CCCCCCccccccccH
Q 005278 549 DENMTAHVSDFGISKLLGEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFT-RKKPTNEIFIGEMSL 627 (704)
Q Consensus 549 ~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-g~~p~~~~~~~~~~~ 627 (704)
+.++.+||+|||+++...............+|+.|+|||++.+..++.++|||||||++|||++ |..||...... ..
T Consensus 225 ~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~~~--~~ 302 (382)
T 3tt0_A 225 TEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVE--EL 302 (382)
T ss_dssp CTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH--HH
T ss_pred cCCCcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCHH--HH
Confidence 9999999999999987765443334445568899999999999999999999999999999999 99999763211 11
Q ss_pred HHHHHhhcCCCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHHhhh
Q 005278 628 KHWVKESLPDGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEKFLD 698 (704)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~~ 698 (704)
...+..... ...+..++.++.+++..||+.||++||+++||++.|+++.+....
T Consensus 303 ~~~~~~~~~-----------------~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~~~ 356 (382)
T 3tt0_A 303 FKLLKEGHR-----------------MDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALTSN 356 (382)
T ss_dssp HHHHHTTCC-----------------CCCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHSCS
T ss_pred HHHHHcCCC-----------------CCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHHhc
Confidence 111111100 011123456788999999999999999999999999999765543
No 45
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=100.00 E-value=2.8e-42 Score=358.31 Aligned_cols=258 Identities=25% Similarity=0.456 Sum_probs=204.5
Q ss_pred CCCCccccccccCceEEEEEEEC-CCCE----EEEEEeeccc-hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEE
Q 005278 415 NGFNECNLLGTGSFGSVYKGTLF-DGTN----VAIKVFNLQL-ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKAL 488 (704)
Q Consensus 415 ~~~~~~~~ig~G~~g~V~~~~~~-~~~~----vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 488 (704)
++|+..+.||+|+||+||+|+.. +++. ||+|.+.... ....+.+.+|+.++++++||||+++++++.... .++
T Consensus 15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-~~~ 93 (327)
T 3poz_A 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQL 93 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS-EEE
T ss_pred HHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC-eEE
Confidence 57888999999999999999854 4443 5888775433 234567999999999999999999999998765 689
Q ss_pred EEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCC
Q 005278 489 VLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEG 568 (704)
Q Consensus 489 v~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~ 568 (704)
|+||+++|+|.+++......+++..++.++.|++.||+|||. .+|+||||||+||+++.++.+||+|||+++.....
T Consensus 94 v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~---~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~ 170 (327)
T 3poz_A 94 ITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAE 170 (327)
T ss_dssp EEECCTTCBHHHHHHHSTTSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEEETTEEEECCTTHHHHHTTT
T ss_pred EEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhh---CCeeCCCCChheEEECCCCCEEEccCcceeEccCC
Confidence 999999999999999877779999999999999999999964 68999999999999999999999999999887654
Q ss_pred CCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhh-CCCCCCccccccccHHHHHHhhcCCCcchhccccc
Q 005278 569 DDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFT-RKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANL 647 (704)
Q Consensus 569 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (704)
..........+|+.|+|||++.+..++.++|||||||++|||+| |+.||...... .....+....
T Consensus 171 ~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~--~~~~~~~~~~------------ 236 (327)
T 3poz_A 171 EKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPAS--EISSILEKGE------------ 236 (327)
T ss_dssp CC-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGG--GHHHHHHTTC------------
T ss_pred cccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCHH--HHHHHHHcCC------------
Confidence 44433444567889999999999999999999999999999999 99999764322 2222222111
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHH
Q 005278 648 VREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEK 695 (704)
Q Consensus 648 ~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~ 695 (704)
....+..++..+.+++.+||+.||++||++.|+++.|+++.+.
T Consensus 237 -----~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~l~~~~~~ 279 (327)
T 3poz_A 237 -----RLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARD 279 (327)
T ss_dssp -----CCCCCTTBCHHHHHHHHHHTCSCGGGSCCHHHHHHHHHHHHTS
T ss_pred -----CCCCCccCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHhh
Confidence 0111223456788999999999999999999999999988653
No 46
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=100.00 E-value=3.4e-41 Score=347.45 Aligned_cols=268 Identities=22% Similarity=0.286 Sum_probs=206.2
Q ss_pred HhCCCCccccccccCceEEEEEEECCCCEEEEEEeeccch--hhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEE
Q 005278 413 ATNGFNECNLLGTGSFGSVYKGTLFDGTNVAIKVFNLQLE--RASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVL 490 (704)
Q Consensus 413 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 490 (704)
..++|+..+.||+|+||+||+|+..+|+.||+|++..... .....+.+|++++++++||||+++++++.+.+..++||
T Consensus 19 l~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 98 (311)
T 3niz_A 19 LMEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVF 98 (311)
T ss_dssp SSCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEE
T ss_pred hHhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEE
Confidence 3478999999999999999999988899999999875432 23467889999999999999999999999999999999
Q ss_pred eccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCCC
Q 005278 491 EFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGDD 570 (704)
Q Consensus 491 e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~~ 570 (704)
||++ |++.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.......
T Consensus 99 e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~ 174 (311)
T 3niz_A 99 EFME-KDLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCH---QHRILHRDLKPQNLLINSDGALKLADFGLARAFGIPVR 174 (311)
T ss_dssp ECCS-EEHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEETTSCCC
T ss_pred cCCC-CCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCchHhEEECCCCCEEEccCcCceecCCCcc
Confidence 9997 5899998877777999999999999999999995 47899999999999999999999999999987653322
Q ss_pred cceeccccccccccCCcccCC-CCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhc---CCCcchhcccc
Q 005278 571 SVIQTMTIATIGYMAPEYGSE-GIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESL---PDGLTEVVDAN 646 (704)
Q Consensus 571 ~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 646 (704)
......||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+....+ .+........ +..+....+..
T Consensus 175 --~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~ 251 (311)
T 3niz_A 175 --SYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDD-QLPKIFSILGTPNPREWPQVQELP 251 (311)
T ss_dssp -----CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTT-HHHHHHHHHCCCCTTTSGGGTTSH
T ss_pred --cccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChHH-HHHHHHHHHCCCChHHhhhhhccc
Confidence 2334568999999998876 568999999999999999999999998643322 2222222111 11111110000
Q ss_pred ------c--hhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 647 ------L--VREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 647 ------~--~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
. ............++.++.+++.+|++.||++|||++|+++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 300 (311)
T 3niz_A 252 LWKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMN 300 (311)
T ss_dssp HHHSCCCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred hhhhcccccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 0 0000011112234567889999999999999999999954
No 47
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=100.00 E-value=2.2e-42 Score=364.55 Aligned_cols=261 Identities=23% Similarity=0.370 Sum_probs=211.0
Q ss_pred hCCCCccccccccCceEEEEEEEC------CCCEEEEEEeeccc-hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeE
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF------DGTNVAIKVFNLQL-ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFK 486 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~ 486 (704)
.++|...+.||+|+||.||+|++. +++.||||++.... ......+.+|+.++++++||||+++++++......
T Consensus 70 ~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~ 149 (367)
T 3l9p_A 70 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR 149 (367)
T ss_dssp GGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred HhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCC
Confidence 357888999999999999999853 46789999986543 34456788999999999999999999999999999
Q ss_pred EEEEeccCCCCHHHHHhhCC------CccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCC---cEEEe
Q 005278 487 ALVLEFMPNGSLEKWLYSHN------YFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENM---TAHVS 557 (704)
Q Consensus 487 ~lv~e~~~~gsL~~~l~~~~------~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~---~~kl~ 557 (704)
++||||+++|+|.+++.... ..+++..++.++.|++.||+||| +.+|+||||||+||+++.++ .+||+
T Consensus 150 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~~~~kL~ 226 (367)
T 3l9p_A 150 FILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE---ENHFIHRDIAARNCLLTCPGPGRVAKIG 226 (367)
T ss_dssp EEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESCSSTTCCEEEC
T ss_pred EEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChhhEEEecCCCCceEEEC
Confidence 99999999999999998543 45899999999999999999995 47899999999999999555 59999
Q ss_pred eeccceecCCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhh-CCCCCCccccccccHHHHHHhhcC
Q 005278 558 DFGISKLLGEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFT-RKKPTNEIFIGEMSLKHWVKESLP 636 (704)
Q Consensus 558 Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~ 636 (704)
|||+++...............||+.|+|||++.+..++.++|||||||++|||+| |..||...... .....+....
T Consensus 227 DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~~--~~~~~i~~~~- 303 (367)
T 3l9p_A 227 DFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQ--EVLEFVTSGG- 303 (367)
T ss_dssp CCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH--HHHHHHHTTC-
T ss_pred CCccccccccccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHHHHcCC-
Confidence 9999986543333233344568999999999988999999999999999999998 99999763211 1111111110
Q ss_pred CCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHHh
Q 005278 637 DGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEKF 696 (704)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~~ 696 (704)
....+..++..+.+++..||+.||++||++.||++.|+.+.+..
T Consensus 304 ----------------~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~eil~~l~~~~~~~ 347 (367)
T 3l9p_A 304 ----------------RMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQDP 347 (367)
T ss_dssp ----------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCH
T ss_pred ----------------CCCCCccCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhhCh
Confidence 01112234567889999999999999999999999999987643
No 48
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=100.00 E-value=3.3e-42 Score=360.85 Aligned_cols=265 Identities=25% Similarity=0.392 Sum_probs=213.0
Q ss_pred HHhCCCCccccccccCceEEEEEEEC------CCCEEEEEEeeccc-hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCC
Q 005278 412 RATNGFNECNLLGTGSFGSVYKGTLF------DGTNVAIKVFNLQL-ERASRSFDSECEILRSIRHRNLIKIISNCCNID 484 (704)
Q Consensus 412 ~~~~~~~~~~~ig~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~ 484 (704)
...++|...+.||+|+||.||+|+.. +++.||||+++... ....+.+.+|++++++++||||+++++++.+.+
T Consensus 44 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~ 123 (343)
T 1luf_A 44 YPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGK 123 (343)
T ss_dssp CCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSS
T ss_pred ecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccCC
Confidence 34578999999999999999999864 34889999997543 334567999999999999999999999999999
Q ss_pred eEEEEEeccCCCCHHHHHhhCC-----------------------CccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCC
Q 005278 485 FKALVLEFMPNGSLEKWLYSHN-----------------------YFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDL 541 (704)
Q Consensus 485 ~~~lv~e~~~~gsL~~~l~~~~-----------------------~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dl 541 (704)
..++||||+++|+|.+++.... ..+++..++.++.|++.||+||| +.+|+||||
T Consensus 124 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dl 200 (343)
T 1luf_A 124 PMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLS---ERKFVHRDL 200 (343)
T ss_dssp SCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCC
T ss_pred ceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCC
Confidence 9999999999999999998632 46899999999999999999995 468999999
Q ss_pred CCCCeeeCCCCcEEEeeeccceecCCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhh-CCCCCCcc
Q 005278 542 KPNNILLDENMTAHVSDFGISKLLGEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFT-RKKPTNEI 620 (704)
Q Consensus 542 k~~Nil~~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-g~~p~~~~ 620 (704)
||+||+++.++.+||+|||+++...............+|+.|+|||++.+..++.++||||||+++|||+| |..||.+.
T Consensus 201 kp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~ 280 (343)
T 1luf_A 201 ATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGM 280 (343)
T ss_dssp SGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTS
T ss_pred CcceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcCCCC
Confidence 99999999999999999999987644332223344568999999999988899999999999999999999 99999763
Q ss_pred ccccccHHHHHHhhcCCCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHHhhh
Q 005278 621 FIGEMSLKHWVKESLPDGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEKFLD 698 (704)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~~ 698 (704)
... .....+.... . ...+..++..+.+++..||+.||++||++.|+++.|+++.+++..
T Consensus 281 ~~~--~~~~~~~~~~---~--------------~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~~~~L~~~~~~~~~ 339 (343)
T 1luf_A 281 AHE--EVIYYVRDGN---I--------------LACPENCPLELYNLMRLCWSKLPADRPSFCSIHRILQRMCERAEG 339 (343)
T ss_dssp CHH--HHHHHHHTTC---C--------------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC----
T ss_pred ChH--HHHHHHhCCC---c--------------CCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHHHHHHhhhhh
Confidence 221 1111111100 0 011223456788999999999999999999999999998876654
No 49
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=100.00 E-value=1.1e-41 Score=352.10 Aligned_cols=264 Identities=22% Similarity=0.352 Sum_probs=216.9
Q ss_pred hCCCCccccccccCceEEEEEEE------CCCCEEEEEEeeccch-hhhHHHHHHHHHHHhc-CCCCCceEEeeeeeCCe
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTL------FDGTNVAIKVFNLQLE-RASRSFDSECEILRSI-RHRNLIKIISNCCNIDF 485 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~------~~~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~ 485 (704)
.++|...+.||+|+||.||+|+. .+++.||||++..... ...+.+.+|+++++++ +||||+++++++...+.
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~ 101 (313)
T 1t46_A 22 RNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGP 101 (313)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred hhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCCC
Confidence 46788899999999999999985 2468899999975432 3457799999999999 99999999999999999
Q ss_pred EEEEEeccCCCCHHHHHhhCCC-----------------ccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeee
Q 005278 486 KALVLEFMPNGSLEKWLYSHNY-----------------FLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILL 548 (704)
Q Consensus 486 ~~lv~e~~~~gsL~~~l~~~~~-----------------~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~ 548 (704)
.++||||+++|+|.+++..... .+++..++.++.|++.||+||| +.+|+||||||+||++
T Consensus 102 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~ 178 (313)
T 1t46_A 102 TLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLA---SKNCIHRDLAARNILL 178 (313)
T ss_dssp CEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEE
T ss_pred cEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCccceEEE
Confidence 9999999999999999986532 4899999999999999999995 4689999999999999
Q ss_pred CCCCcEEEeeeccceecCCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhh-CCCCCCccccccccH
Q 005278 549 DENMTAHVSDFGISKLLGEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFT-RKKPTNEIFIGEMSL 627 (704)
Q Consensus 549 ~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-g~~p~~~~~~~~~~~ 627 (704)
+.++.+||+|||++................+|+.|+|||++.+..++.++||||||+++|||+| |+.||....... ..
T Consensus 179 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~-~~ 257 (313)
T 1t46_A 179 THGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDS-KF 257 (313)
T ss_dssp ETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSH-HH
T ss_pred cCCCCEEEccccccccccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccchh-HH
Confidence 9999999999999988765544334445568899999999988899999999999999999999 999997643221 11
Q ss_pred HHHHHhhcCCCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHHhhh
Q 005278 628 KHWVKESLPDGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEKFLD 698 (704)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~~ 698 (704)
.......... ..+..++..+.+++.+||+.||++||++.|+++.|+++.++...
T Consensus 258 ~~~~~~~~~~-----------------~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~~ 311 (313)
T 1t46_A 258 YKMIKEGFRM-----------------LSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISESTN 311 (313)
T ss_dssp HHHHHHTCCC-----------------CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTCC
T ss_pred HHHhccCCCC-----------------CCcccCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHHhhc
Confidence 1111111100 11123456788999999999999999999999999998876544
No 50
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=4e-41 Score=348.00 Aligned_cols=251 Identities=19% Similarity=0.285 Sum_probs=207.2
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEEec
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQLERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVLEF 492 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 492 (704)
.++|...+.||+|+||.||+|+.. +++.||+|.+... ......+.+|+++++.++||||+++++++.+.+..++||||
T Consensus 4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~-~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~ 82 (321)
T 1tki_A 4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVK-GTDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEF 82 (321)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCC-THHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECC
T ss_pred hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecC-cccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEEe
Confidence 468999999999999999999865 6889999998754 33456788999999999999999999999999999999999
Q ss_pred cCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCC--CCcEEEeeeccceecCCCCC
Q 005278 493 MPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDE--NMTAHVSDFGISKLLGEGDD 570 (704)
Q Consensus 493 ~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~--~~~~kl~Dfgla~~~~~~~~ 570 (704)
+++|+|.+++......+++..+..++.|++.|++||| +.+|+||||||+||+++. ++.+||+|||++.......
T Consensus 83 ~~g~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH---~~givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~- 158 (321)
T 1tki_A 83 ISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLH---SHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGD- 158 (321)
T ss_dssp CCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTC-
T ss_pred CCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCCCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCCC-
Confidence 9999999999877667999999999999999999995 468999999999999997 7899999999998875432
Q ss_pred cceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccchhh
Q 005278 571 SVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLVRE 650 (704)
Q Consensus 571 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (704)
......||+.|+|||++.+..++.++||||+||++|||++|..||...... ............ .
T Consensus 159 --~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~-~~~~~i~~~~~~------------~- 222 (321)
T 1tki_A 159 --NFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQ-QIIENIMNAEYT------------F- 222 (321)
T ss_dssp --EEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHH-HHHHHHHHTCCC------------C-
T ss_pred --ccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCHH-HHHHHHHcCCCC------------C-
Confidence 234457999999999999888999999999999999999999999763211 111111110000 0
Q ss_pred hhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 651 EQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 651 ~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
.......++.++.+++.+|++.||++|||+.|+++
T Consensus 223 --~~~~~~~~s~~~~~li~~~L~~dp~~Rpt~~e~l~ 257 (321)
T 1tki_A 223 --DEEAFKEISIEAMDFVDRLLVKERKSRMTASEALQ 257 (321)
T ss_dssp --CHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred --ChhhhccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 00111234567889999999999999999999976
No 51
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=100.00 E-value=8.4e-42 Score=347.49 Aligned_cols=259 Identities=23% Similarity=0.359 Sum_probs=210.3
Q ss_pred HhCCCCccccccccCceEEEEEEECCCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEEec
Q 005278 413 ATNGFNECNLLGTGSFGSVYKGTLFDGTNVAIKVFNLQLERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVLEF 492 (704)
Q Consensus 413 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 492 (704)
..++|+..+.||+|+||.||+|...++..||+|++.... ...+.+.+|++++++++||||+++++++.+....++||||
T Consensus 22 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 100 (283)
T 3gen_A 22 DPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGS-MSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEY 100 (283)
T ss_dssp CGGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEECC
T ss_pred CHHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCC-CCHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEec
Confidence 346888899999999999999999888899999997543 2346789999999999999999999999999999999999
Q ss_pred cCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCCCcc
Q 005278 493 MPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGDDSV 572 (704)
Q Consensus 493 ~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~~~~ 572 (704)
+++|+|.+++......+++..+..++.|++.|++||| +.+|+||||||+||+++.++.+||+|||+++...... ..
T Consensus 101 ~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~-~~ 176 (283)
T 3gen_A 101 MANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLE---SKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDE-YT 176 (283)
T ss_dssp CTTCBHHHHHHCGGGCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHH-HH
T ss_pred cCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCccceEEEcCCCCEEEccccccccccccc-cc
Confidence 9999999999876666999999999999999999995 4689999999999999999999999999998764321 11
Q ss_pred eeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhh-CCCCCCccccccccHHHHHHhhcCCCcchhccccchhhh
Q 005278 573 IQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFT-RKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLVREE 651 (704)
Q Consensus 573 ~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (704)
......+|+.|+|||++.+..++.++||||+|+++|||+| |+.||....... ....+.....
T Consensus 177 ~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~~--~~~~~~~~~~--------------- 239 (283)
T 3gen_A 177 SSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSE--TAEHIAQGLR--------------- 239 (283)
T ss_dssp STTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHHH--HHHHHHTTCC---------------
T ss_pred cccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccChhH--HHHHHhcccC---------------
Confidence 1223456888999999998889999999999999999998 999997632211 1111111000
Q ss_pred hhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHH
Q 005278 652 QAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEK 695 (704)
Q Consensus 652 ~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~ 695 (704)
...+..++..+.+++..||+.||++||+++|+++.|+++.++
T Consensus 240 --~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~~~~~ 281 (283)
T 3gen_A 240 --LYRPHLASEKVYTIMYSCWHEKADERPTFKILLSNILDVMDE 281 (283)
T ss_dssp --CCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred --CCCCCcCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHhhc
Confidence 001112345688999999999999999999999999998764
No 52
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.1e-41 Score=357.07 Aligned_cols=266 Identities=23% Similarity=0.361 Sum_probs=212.2
Q ss_pred HhCCCCccccccccCceEEEEEEE------CCCCEEEEEEeeccc-hhhhHHHHHHHHHHHhc-CCCCCceEEeeeeeCC
Q 005278 413 ATNGFNECNLLGTGSFGSVYKGTL------FDGTNVAIKVFNLQL-ERASRSFDSECEILRSI-RHRNLIKIISNCCNID 484 (704)
Q Consensus 413 ~~~~~~~~~~ig~G~~g~V~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~ 484 (704)
..++|...+.||+|+||.||+|+. .++..||||++.... ....+.+.+|+.+++++ +||||+++++++...+
T Consensus 43 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~ 122 (344)
T 1rjb_A 43 PRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSG 122 (344)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred CHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeCC
Confidence 457889999999999999999985 245689999997543 33456799999999999 8999999999999999
Q ss_pred eEEEEEeccCCCCHHHHHhhCCC----------------------ccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCC
Q 005278 485 FKALVLEFMPNGSLEKWLYSHNY----------------------FLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLK 542 (704)
Q Consensus 485 ~~~lv~e~~~~gsL~~~l~~~~~----------------------~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk 542 (704)
..++||||+++|+|.+++..... .+++..++.++.|++.||+||| +.+|+|||||
T Consensus 123 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dik 199 (344)
T 1rjb_A 123 PIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLE---FKSCVHRDLA 199 (344)
T ss_dssp SCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHH---HTTEEETTCS
T ss_pred ccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCC
Confidence 99999999999999999986532 3789999999999999999995 4789999999
Q ss_pred CCCeeeCCCCcEEEeeeccceecCCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhh-CCCCCCccc
Q 005278 543 PNNILLDENMTAHVSDFGISKLLGEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFT-RKKPTNEIF 621 (704)
Q Consensus 543 ~~Nil~~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-g~~p~~~~~ 621 (704)
|+||+++.++.+||+|||++................||+.|+|||++.+..++.++||||||+++|||+| |..||.+..
T Consensus 200 p~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~ 279 (344)
T 1rjb_A 200 ARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIP 279 (344)
T ss_dssp GGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC
T ss_pred hhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCcccCC
Confidence 9999999999999999999987755444444455678899999999988899999999999999999998 999997643
Q ss_pred cccccHHHHHHhhcCCCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHHhhhh
Q 005278 622 IGEMSLKHWVKESLPDGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEKFLDD 699 (704)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~~~ 699 (704)
... ........... ...+..++..+.+++..||+.||++||++.|+++.|+.+.+.....
T Consensus 280 ~~~-~~~~~~~~~~~-----------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~~~~ 339 (344)
T 1rjb_A 280 VDA-NFYKLIQNGFK-----------------MDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFLGCQLADAEEA 339 (344)
T ss_dssp CSH-HHHHHHHTTCC-----------------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC------
T ss_pred cHH-HHHHHHhcCCC-----------------CCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHHHHHH
Confidence 221 12222221110 0111234567889999999999999999999999999987665543
No 53
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=100.00 E-value=1.4e-41 Score=358.73 Aligned_cols=272 Identities=14% Similarity=0.136 Sum_probs=209.6
Q ss_pred HhCCCCccccccccCceEEEEEEECC------CCEEEEEEeeccchh-----------hhHHHHHHHHHHHhcCCCCCce
Q 005278 413 ATNGFNECNLLGTGSFGSVYKGTLFD------GTNVAIKVFNLQLER-----------ASRSFDSECEILRSIRHRNLIK 475 (704)
Q Consensus 413 ~~~~~~~~~~ig~G~~g~V~~~~~~~------~~~vavK~~~~~~~~-----------~~~~~~~e~~~l~~l~h~niv~ 475 (704)
..++|.+.+.||+|+||.||+|...+ ++.||||++...... ....+..|+..++.++||||++
T Consensus 33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~ 112 (364)
T 3op5_A 33 AAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPK 112 (364)
T ss_dssp TCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCC
T ss_pred CCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCe
Confidence 34689999999999999999998754 478999998654311 1122344566677778999999
Q ss_pred EEeeeeeC----CeEEEEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeC--
Q 005278 476 IISNCCNI----DFKALVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLD-- 549 (704)
Q Consensus 476 l~~~~~~~----~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~-- 549 (704)
+++++... ...++||||+ +|+|.+++......+++..+..++.|++.||+|||. .+|+||||||+||+++
T Consensus 113 ~~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~---~~iiHrDlkp~Nill~~~ 188 (364)
T 3op5_A 113 YWGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIHE---HEYVHGDIKASNLLLNYK 188 (364)
T ss_dssp EEEEEEEEETTEEEEEEEEECE-EEEHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEEESS
T ss_pred EEeeeeeccCCcceEEEEEeCC-CCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH---CCeEEecCCHHHEEEecC
Confidence 99998764 4579999999 999999998876779999999999999999999954 6899999999999999
Q ss_pred CCCcEEEeeeccceecCCCCCc-----ceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCcccccc
Q 005278 550 ENMTAHVSDFGISKLLGEGDDS-----VIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGE 624 (704)
Q Consensus 550 ~~~~~kl~Dfgla~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~ 624 (704)
.++.+||+|||+++.+...... .......||+.|+|||++.+..++.++|||||||++|||+||+.||.+....
T Consensus 189 ~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~~- 267 (364)
T 3op5_A 189 NPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKD- 267 (364)
T ss_dssp CTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTC-
T ss_pred CCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccccccC-
Confidence 8899999999999876432211 1113345999999999999999999999999999999999999999863322
Q ss_pred ccHHHHHHhhcCCCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHHhh
Q 005278 625 MSLKHWVKESLPDGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEKFL 697 (704)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~ 697 (704)
.....+........+....++.+. ...++.++.+++..||+.+|++||++.++++.|+++.++..
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~li~~cl~~~p~~RP~~~~l~~~l~~~~~~~~ 332 (364)
T 3op5_A 268 PKYVRDSKIRYRENIASLMDKCFP--------AANAPGEIAKYMETVKLLDYTEKPLYENLRDILLQGLKAIG 332 (364)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHSC--------TTCCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhhHHHHHHHhcc--------cccCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHcC
Confidence 222222222221222222221110 12346778999999999999999999999999999877643
No 54
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=100.00 E-value=1e-41 Score=347.89 Aligned_cols=261 Identities=27% Similarity=0.435 Sum_probs=197.3
Q ss_pred HhCCCCccccccccCceEEEEEEECCCCEEEEEEeeccc--hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEE
Q 005278 413 ATNGFNECNLLGTGSFGSVYKGTLFDGTNVAIKVFNLQL--ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVL 490 (704)
Q Consensus 413 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 490 (704)
..++|+..+.||+|+||+||+|+.. ..||||+++... ....+.+.+|++++++++||||+++++++ .....++||
T Consensus 22 ~~~~y~~~~~lG~G~~g~Vy~~~~~--~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-~~~~~~lv~ 98 (289)
T 3og7_A 22 PDGQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAPQLAIVT 98 (289)
T ss_dssp CTTSCEEEEEEEECSSEEEEEEESS--SEEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-CSSSCEEEE
T ss_pred CccceeeeeEecCCCCeEEEEEEEc--CceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeec-cCCccEEEE
Confidence 3568999999999999999999854 469999987543 33456799999999999999999999965 455679999
Q ss_pred eccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCCC
Q 005278 491 EFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGDD 570 (704)
Q Consensus 491 e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~~ 570 (704)
||+++++|.+++......+++..++.++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.......
T Consensus 99 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~lH---~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~ 175 (289)
T 3og7_A 99 QWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLH---AKSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSG 175 (289)
T ss_dssp ECCCEEEHHHHHTTC---CCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEETTTEEEECCCC----------
T ss_pred EecCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---hCCcccccCccceEEECCCCCEEEccceeccccccccc
Confidence 999999999999877777999999999999999999995 47899999999999999999999999999987654333
Q ss_pred cceeccccccccccCCcccC---CCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHh-hcCCCcchhcccc
Q 005278 571 SVIQTMTIATIGYMAPEYGS---EGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKE-SLPDGLTEVVDAN 646 (704)
Q Consensus 571 ~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 646 (704)
........||+.|+|||++. +..++.++||||||+++|||++|+.||......+. ....... .......
T Consensus 176 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~-~~~~~~~~~~~~~~~------ 248 (289)
T 3og7_A 176 SHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQ-IIEMVGRGSLSPDLS------ 248 (289)
T ss_dssp --------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCHHH-HHHHHHHTSCCCCTT------
T ss_pred cccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccchHHH-HHHHhcccccCcchh------
Confidence 33334457999999999886 66788899999999999999999999976432221 1111111 1111110
Q ss_pred chhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHH
Q 005278 647 LVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKE 694 (704)
Q Consensus 647 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~ 694 (704)
.....++..+.+++..||+.||++||++.|+++.|+++.+
T Consensus 249 --------~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~l~~ 288 (289)
T 3og7_A 249 --------KVRSNCPKRMKRLMAECLKKKRDERPSFPRILAEIEELAR 288 (289)
T ss_dssp --------SSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC
T ss_pred --------hccccCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHhh
Confidence 0112445678999999999999999999999999998753
No 55
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.5e-41 Score=347.80 Aligned_cols=257 Identities=27% Similarity=0.393 Sum_probs=203.4
Q ss_pred CCCCccccccccCceEEEEEEECCCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEEeccC
Q 005278 415 NGFNECNLLGTGSFGSVYKGTLFDGTNVAIKVFNLQLERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVLEFMP 494 (704)
Q Consensus 415 ~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~ 494 (704)
++|+..+.||+|+||.||+|+.. ++.||||++... ...+.+.+|++++++++||||+++++++.+ ..++||||++
T Consensus 8 ~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~--~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~--~~~lv~e~~~ 82 (307)
T 2eva_A 8 KEIEVEEVVGRGAFGVVCKAKWR-AKDVAIKQIESE--SERKAFIVELRQLSRVNHPNIVKLYGACLN--PVCLVMEYAE 82 (307)
T ss_dssp GGEEEEEEEECCSSSEEEEEEET-TEEEEEEECSST--THHHHHHHHHHHHHHCCCTTBCCEEEBCTT--TTEEEEECCT
T ss_pred hHeeeeeEeecCCCceEEEEEEC-CeeEEEEEecCh--hHHHHHHHHHHHHhcCCCCCcCeEEEEEcC--CcEEEEEcCC
Confidence 56888899999999999999874 788999998643 345678999999999999999999998874 4789999999
Q ss_pred CCCHHHHHhhCCC--ccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCc-EEEeeeccceecCCCCCc
Q 005278 495 NGSLEKWLYSHNY--FLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMT-AHVSDFGISKLLGEGDDS 571 (704)
Q Consensus 495 ~gsL~~~l~~~~~--~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~-~kl~Dfgla~~~~~~~~~ 571 (704)
+|+|.+++..... .+++..++.++.|+++|++|||+.|..+|+||||||+||+++.++. +||+|||++......
T Consensus 83 ~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~--- 159 (307)
T 2eva_A 83 GGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTH--- 159 (307)
T ss_dssp TCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC----------
T ss_pred CCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEcccccccccccc---
Confidence 9999999986542 4788999999999999999998866689999999999999998886 799999999765322
Q ss_pred ceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccchhhh
Q 005278 572 VIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLVREE 651 (704)
Q Consensus 572 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (704)
.....||+.|+|||++.+..++.++||||||+++|||++|+.||...................
T Consensus 160 --~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~--------------- 222 (307)
T 2eva_A 160 --MTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGTR--------------- 222 (307)
T ss_dssp -------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHHHHHHHHHTTCC---------------
T ss_pred --cccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccHHHHHHHHhcCCC---------------
Confidence 223468999999999999999999999999999999999999997643221111111111000
Q ss_pred hhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHHhhh
Q 005278 652 QAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEKFLD 698 (704)
Q Consensus 652 ~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~~ 698 (704)
......++..+.+++.+||+.||++||+++|+++.|+.+.+.+..
T Consensus 223 --~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~~ 267 (307)
T 2eva_A 223 --PPLIKNLPKPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYFPG 267 (307)
T ss_dssp --CCCBTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHGGGCCC
T ss_pred --CCcccccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhccC
Confidence 011123456688999999999999999999999999999876643
No 56
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=100.00 E-value=1.2e-41 Score=352.05 Aligned_cols=260 Identities=28% Similarity=0.404 Sum_probs=214.2
Q ss_pred hCCCCccccccccCceEEEEEEE------CCCCEEEEEEeeccc-hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeE
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTL------FDGTNVAIKVFNLQL-ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFK 486 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~ 486 (704)
.++|...+.||+|+||.||+|+. .+++.||||++.... ....+.+.+|++++++++||||+++++++.+.+..
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~ 101 (314)
T 2ivs_A 22 RKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPL 101 (314)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSC
T ss_pred hhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCCce
Confidence 46788899999999999999985 245889999997543 33456789999999999999999999999999999
Q ss_pred EEEEeccCCCCHHHHHhhCC-----------------------CccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCC
Q 005278 487 ALVLEFMPNGSLEKWLYSHN-----------------------YFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKP 543 (704)
Q Consensus 487 ~lv~e~~~~gsL~~~l~~~~-----------------------~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~ 543 (704)
++||||+++|+|.+++.... ..+++..++.++.|++.||+||| +.+|+||||||
T Consensus 102 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dikp 178 (314)
T 2ivs_A 102 LLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLA---EMKLVHRDLAA 178 (314)
T ss_dssp EEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHH---HTTEECCCCSG
T ss_pred EEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHH---HCCCcccccch
Confidence 99999999999999998543 24889999999999999999995 46899999999
Q ss_pred CCeeeCCCCcEEEeeeccceecCCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhh-CCCCCCcccc
Q 005278 544 NNILLDENMTAHVSDFGISKLLGEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFT-RKKPTNEIFI 622 (704)
Q Consensus 544 ~Nil~~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-g~~p~~~~~~ 622 (704)
+||+++.++.+||+|||+++...............+|+.|+|||.+.+..++.++||||||+++|||++ |+.||.+...
T Consensus 179 ~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~ 258 (314)
T 2ivs_A 179 RNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPP 258 (314)
T ss_dssp GGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCG
T ss_pred heEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCCH
Confidence 999999999999999999988755443333344567899999999988889999999999999999999 9999976432
Q ss_pred ccccHHHHHHhhcCCCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHH
Q 005278 623 GEMSLKHWVKESLPDGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEK 695 (704)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~ 695 (704)
. .....+..... ...+..++..+.+++.+||+.||++||++.|+++.|+++.++
T Consensus 259 ~--~~~~~~~~~~~-----------------~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~ 312 (314)
T 2ivs_A 259 E--RLFNLLKTGHR-----------------MERPDNCSEEMYRLMLQCWKQEPDKRPVFADISKDLEKMMVK 312 (314)
T ss_dssp G--GHHHHHHTTCC-----------------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred H--HHHHHhhcCCc-----------------CCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhh
Confidence 1 12222211110 011123456788999999999999999999999999998654
No 57
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=100.00 E-value=9.4e-41 Score=342.51 Aligned_cols=265 Identities=15% Similarity=0.144 Sum_probs=215.6
Q ss_pred hCCCCccccccccCceEEEEEEE-CCCCEEEEEEeeccchhhhHHHHHHHHHHHhc-CCCCCceEEeeeeeCCeEEEEEe
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTL-FDGTNVAIKVFNLQLERASRSFDSECEILRSI-RHRNLIKIISNCCNIDFKALVLE 491 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e 491 (704)
.++|...+.||+|+||.||+|+. .+++.||||++... ...+.+.+|+.+++.+ +|+|++++++++......++|||
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e 86 (298)
T 1csn_A 9 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRR--SDAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVID 86 (298)
T ss_dssp TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECC--TTSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEE
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccC--CccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEEE
Confidence 46799999999999999999985 57999999998643 2345688999999999 79999999999999999999999
Q ss_pred ccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCc-----EEEeeeccceecC
Q 005278 492 FMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMT-----AHVSDFGISKLLG 566 (704)
Q Consensus 492 ~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~-----~kl~Dfgla~~~~ 566 (704)
|+ +++|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++. +||+|||+++...
T Consensus 87 ~~-~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~~ 162 (298)
T 1csn_A 87 LL-GPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIH---EKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYR 162 (298)
T ss_dssp CC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESB
T ss_pred ec-CCCHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEeccCCCCCCCeEEEEECccccccc
Confidence 99 99999999977667999999999999999999995 578999999999999987776 9999999998875
Q ss_pred CCCCc-----ceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCcccccccc--HHHHHHhhcCCCc
Q 005278 567 EGDDS-----VIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMS--LKHWVKESLPDGL 639 (704)
Q Consensus 567 ~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~--~~~~~~~~~~~~~ 639 (704)
..... .......||+.|+|||++.+..++.++||||||+++|||++|+.||......... +.........
T Consensus 163 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~--- 239 (298)
T 1csn_A 163 DPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQS--- 239 (298)
T ss_dssp CTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHH---
T ss_pred cccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHHHHHHHHhhccC---
Confidence 53321 1234457999999999999999999999999999999999999999874322110 0110000000
Q ss_pred chhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHHhhh
Q 005278 640 TEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEKFLD 698 (704)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~~ 698 (704)
.........++..+.+++..||+.||++||++++|++.|+++.++...
T Consensus 240 -----------~~~~~~~~~~~~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~~~~~~~ 287 (298)
T 1csn_A 240 -----------TPLRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLERLNT 287 (298)
T ss_dssp -----------SCHHHHTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHTTC
T ss_pred -----------ccHHHHHhhCcHHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhcCC
Confidence 000111224567889999999999999999999999999999876543
No 58
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.7e-40 Score=345.47 Aligned_cols=274 Identities=25% Similarity=0.362 Sum_probs=210.8
Q ss_pred HHHHHhCCCCccccccccCceEEEEEEECCCCEEEEEEeeccchhhhHHHHHHHHHHHhc--CCCCCceEEeeeeeC---
Q 005278 409 DIQRATNGFNECNLLGTGSFGSVYKGTLFDGTNVAIKVFNLQLERASRSFDSECEILRSI--RHRNLIKIISNCCNI--- 483 (704)
Q Consensus 409 ~~~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l--~h~niv~l~~~~~~~--- 483 (704)
......++|+..+.||+|+||.||+|+.. ++.||||++... ....+..|.+++... +||||+++++++...
T Consensus 31 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~ 106 (337)
T 3mdy_A 31 VQRTIAKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTT---EEASWFRETEIYQTVLMRHENILGFIAADIKGTGS 106 (337)
T ss_dssp HHTTHHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGG---GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGG
T ss_pred cccccccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEecc---ccchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCC
Confidence 33445678999999999999999999875 899999998643 233445555555554 899999999999887
Q ss_pred -CeEEEEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhc-----CCCCcEecCCCCCCeeeCCCCcEEEe
Q 005278 484 -DFKALVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHG-----HSTPMVHCDLKPNNILLDENMTAHVS 557 (704)
Q Consensus 484 -~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~-----h~~~ivH~dlk~~Nil~~~~~~~kl~ 557 (704)
...++||||+++|+|.+++... .+++..++.++.|++.||+|||.. +..+|+||||||+||+++.++.+||+
T Consensus 107 ~~~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kl~ 184 (337)
T 3mdy_A 107 WTQLYLITDYHENGSLYDYLKST--TLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIA 184 (337)
T ss_dssp GCEEEEEECCCTTCBHHHHHHHC--CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSCEEEC
T ss_pred CCceEEEEeccCCCcHHHHhhcc--CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCCCEEEE
Confidence 6889999999999999999765 389999999999999999999753 24499999999999999999999999
Q ss_pred eeccceecCCCCCcc--eeccccccccccCCcccCCCCCCcc------cceeeHHHHHHHHhhC----------CCCCCc
Q 005278 558 DFGISKLLGEGDDSV--IQTMTIATIGYMAPEYGSEGIISPK------SDVYSYGILLMETFTR----------KKPTNE 619 (704)
Q Consensus 558 Dfgla~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~------~Dv~s~Gv~l~el~tg----------~~p~~~ 619 (704)
|||++..+....... ......||+.|+|||++.+...+.+ +|||||||++|||+|| +.||..
T Consensus 185 Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p~~~ 264 (337)
T 3mdy_A 185 DLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHD 264 (337)
T ss_dssp CCTTCEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTT
T ss_pred eCCCceeeccccccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCcccccccccccHhh
Confidence 999998764432211 1224479999999999887766665 9999999999999999 666665
Q ss_pred cccccccHHHHHHhhcCCCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHHh
Q 005278 620 IFIGEMSLKHWVKESLPDGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEKF 696 (704)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~~ 696 (704)
..........+............. +.......++..+.+++.+||+.||++||++.||++.|+++.+..
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~ 333 (337)
T 3mdy_A 265 LVPSDPSYEDMREIVCIKKLRPSF--------PNRWSSDECLRQMGKLMTECWAHNPASRLTALRVKKTLAKMSESQ 333 (337)
T ss_dssp TSCSSCCHHHHHHHHTTSCCCCCC--------CGGGGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHTT
T ss_pred hcCCCCchhhhHHHHhhhccCccc--------cccchhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHHHHHHHhhc
Confidence 544444444433322211111111 111123367888999999999999999999999999999987653
No 59
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Probab=100.00 E-value=4.6e-41 Score=349.00 Aligned_cols=248 Identities=22% Similarity=0.259 Sum_probs=203.5
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccc---hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEE
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL---ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALV 489 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 489 (704)
.++|+..+.||+|+||.||+|+.. +|+.||+|+++... ......+.+|+++++.++||||+++++++...+..++|
T Consensus 4 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv 83 (337)
T 1o6l_A 4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFV 83 (337)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEE
T ss_pred hHHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEE
Confidence 357889999999999999999865 69999999997643 23446788999999999999999999999999999999
Q ss_pred EeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCC
Q 005278 490 LEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGD 569 (704)
Q Consensus 490 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~ 569 (704)
|||+++|+|.+++...+ .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++......
T Consensus 84 ~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~ 159 (337)
T 1o6l_A 84 MEYANGGELFFHLSRER-VFTEERARFYGAEIVSALEYLH---SRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDG 159 (337)
T ss_dssp EECCTTCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTT
T ss_pred EeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeecCcCCHHHEEECCCCCEEEeeccchhhcccCC
Confidence 99999999999997654 4889999999999999999995 4689999999999999999999999999998643222
Q ss_pred CcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccchh
Q 005278 570 DSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLVR 649 (704)
Q Consensus 570 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (704)
.......||+.|+|||++.+..++.++|||||||++|||++|+.||.+... ...........
T Consensus 160 --~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~-----~~~~~~i~~~~----------- 221 (337)
T 1o6l_A 160 --ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH-----ERLFELILMEE----------- 221 (337)
T ss_dssp --CCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHHHHCC-----------
T ss_pred --CcccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCCH-----HHHHHHHHcCC-----------
Confidence 123445799999999999999999999999999999999999999975321 11111100000
Q ss_pred hhhhhhhhHHHHHHHHHHHhhhcCCCCCCCC-----CHHHHHH
Q 005278 650 EEQAFSVKIDCLLSIMHLALDCCMESPEQRV-----SMKDAAA 687 (704)
Q Consensus 650 ~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rp-----t~~ev~~ 687 (704)
...+..++..+.+++.+||+.||++|| ++.|+++
T Consensus 222 ----~~~p~~~s~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~ 260 (337)
T 1o6l_A 222 ----IRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVME 260 (337)
T ss_dssp ----CCCCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred ----CCCCCCCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHHc
Confidence 001123456788999999999999999 8888865
No 60
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=100.00 E-value=7.4e-41 Score=348.32 Aligned_cols=264 Identities=17% Similarity=0.186 Sum_probs=212.1
Q ss_pred hCCCCccccccccCceEEEEEEE-CCCCEEEEEEeeccchhhhHHHHHHHHHHHhc-CCCCCceEEeeeeeCCeEEEEEe
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTL-FDGTNVAIKVFNLQLERASRSFDSECEILRSI-RHRNLIKIISNCCNIDFKALVLE 491 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e 491 (704)
.++|...+.||+|+||.||+|+. .+++.||||++.... ..+.+.+|+++++++ +||||+++++++...+..++|||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e 85 (330)
T 2izr_A 8 GPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKS--RAPQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLE 85 (330)
T ss_dssp TTTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTC--SSCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEE
T ss_pred cCCeEEEEEeeccCCceEEEEEECCCCcEEEEEEecccc--chHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEE
Confidence 46799999999999999999985 579999999986542 234688999999999 99999999999999999999999
Q ss_pred ccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCc-----EEEeeeccceecC
Q 005278 492 FMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMT-----AHVSDFGISKLLG 566 (704)
Q Consensus 492 ~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~-----~kl~Dfgla~~~~ 566 (704)
|+ +|+|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++. +||+|||+++.+.
T Consensus 86 ~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~~ 161 (330)
T 2izr_A 86 LL-GPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVH---SKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEYI 161 (330)
T ss_dssp CC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECCGGGTCTTSEEECCCTTCEESB
T ss_pred eC-CCCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHeeeccCCCCCCceEEEEEcccceeee
Confidence 99 99999999876667999999999999999999996 468999999999999998887 9999999999765
Q ss_pred CCCCcc-----eeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcch
Q 005278 567 EGDDSV-----IQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTE 641 (704)
Q Consensus 567 ~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (704)
...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||.+..... ........
T Consensus 162 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~--~~~~~~~i------- 232 (330)
T 2izr_A 162 DPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADT--LKERYQKI------- 232 (330)
T ss_dssp CTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSS--HHHHHHHH-------
T ss_pred cCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCcccccccc--HHHHHHHH-------
Confidence 433211 1234579999999999999999999999999999999999999998743221 11111100
Q ss_pred hccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHHh
Q 005278 642 VVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEKF 696 (704)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~~ 696 (704)
..... ..........++ ++.+++..||+.||.+||++.+|.+.|+++.++.
T Consensus 233 -~~~~~--~~~~~~~~~~~p-~~~~li~~~l~~~p~~RP~~~~l~~~l~~~~~~~ 283 (330)
T 2izr_A 233 -GDTKR--ATPIEVLCENFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRK 283 (330)
T ss_dssp -HHHHH--HSCHHHHTTTCH-HHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred -Hhhhc--cCCHHHHhccCh-HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHc
Confidence 00000 000000111234 7899999999999999999999999999887664
No 61
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=100.00 E-value=1.2e-40 Score=349.04 Aligned_cols=251 Identities=20% Similarity=0.256 Sum_probs=204.8
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccchh------hhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeE
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQLER------ASRSFDSECEILRSIRHRNLIKIISNCCNIDFK 486 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~------~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~ 486 (704)
.++|+..+.||+|+||.||+|+.. +|+.||+|++...... ..+.+.+|+.++++++||||+++++++.+....
T Consensus 11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~ 90 (361)
T 2yab_A 11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDV 90 (361)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEE
T ss_pred hhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEE
Confidence 467999999999999999999865 6999999999765321 246789999999999999999999999999999
Q ss_pred EEEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCC----cEEEeeeccc
Q 005278 487 ALVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENM----TAHVSDFGIS 562 (704)
Q Consensus 487 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~----~~kl~Dfgla 562 (704)
++||||+++|+|.+++.... .+++..+..++.|++.|++||| +.+|+||||||+||+++.++ .+||+|||++
T Consensus 91 ~lv~e~~~gg~L~~~l~~~~-~l~~~~~~~i~~qi~~aL~~LH---~~givHrDlkp~NIll~~~~~~~~~vkl~DFG~a 166 (361)
T 2yab_A 91 VLILELVSGGELFDFLAQKE-SLSEEEATSFIKQILDGVNYLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLA 166 (361)
T ss_dssp EEEEECCCSCBHHHHHTTCS-CCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESCTTSSSCCEEECCCSSC
T ss_pred EEEEEcCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEeCCCCCccCEEEEecCCc
Confidence 99999999999999997643 5899999999999999999995 46899999999999998777 7999999999
Q ss_pred eecCCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchh
Q 005278 563 KLLGEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEV 642 (704)
Q Consensus 563 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (704)
....... ......||+.|+|||++.+..++.++||||+||++|+|++|..||.+... ..........
T Consensus 167 ~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~-----~~~~~~i~~~----- 233 (361)
T 2yab_A 167 HEIEDGV---EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK-----QETLANITAV----- 233 (361)
T ss_dssp EECCTTC---CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSH-----HHHHHHHHTT-----
T ss_pred eEcCCCC---ccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCH-----HHHHHHHHhc-----
Confidence 8875432 22345799999999999999999999999999999999999999976321 1111110000
Q ss_pred ccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 643 VDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
.... .......++..+.+++.+||+.||++|||+.|+++
T Consensus 234 ---~~~~---~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~e~l~ 272 (361)
T 2yab_A 234 ---SYDF---DEEFFSQTSELAKDFIRKLLVKETRKRLTIQEALR 272 (361)
T ss_dssp ---CCCC---CHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred ---CCCC---CchhccCCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 0000 00111234567889999999999999999999974
No 62
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=100.00 E-value=3.3e-41 Score=365.20 Aligned_cols=252 Identities=28% Similarity=0.438 Sum_probs=208.4
Q ss_pred hCCCCccccccccCceEEEEEEECCCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCC-eEEEEEec
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLFDGTNVAIKVFNLQLERASRSFDSECEILRSIRHRNLIKIISNCCNID-FKALVLEF 492 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~-~~~lv~e~ 492 (704)
.++|...+.||+|+||.||+|+.. ++.||||+++... ..+.+.+|++++++++||||+++++++...+ ..++||||
T Consensus 192 ~~~~~~~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~e~ 268 (450)
T 1k9a_A 192 MKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEY 268 (450)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEET-TEEEEEEEESSCT--TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEEEC
T ss_pred hHHeEEEeeecCcCCeeEEEEEec-CCeEEEEEeCCch--HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEEEe
Confidence 467888899999999999999875 7899999987542 4578999999999999999999999987765 78999999
Q ss_pred cCCCCHHHHHhhCCC-ccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCCCc
Q 005278 493 MPNGSLEKWLYSHNY-FLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGDDS 571 (704)
Q Consensus 493 ~~~gsL~~~l~~~~~-~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~~~ 571 (704)
+++|+|.+++...+. .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 269 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~--- 342 (450)
T 1k9a_A 269 MAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST--- 342 (450)
T ss_dssp CTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTSCEEECCCTTCEECC-----
T ss_pred cCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCCHhhEEECCCCCEEEeeCCCccccccc---
Confidence 999999999986543 4689999999999999999995 468999999999999999999999999999865322
Q ss_pred ceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhh-CCCCCCccccccccHHHHHHhhcCCCcchhccccchhh
Q 005278 572 VIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFT-RKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLVRE 650 (704)
Q Consensus 572 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (704)
.....+++.|+|||++.+..++.++|||||||++|||+| |+.||......+ ....+...
T Consensus 343 --~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~--~~~~i~~~---------------- 402 (450)
T 1k9a_A 343 --QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKD--VVPRVEKG---------------- 402 (450)
T ss_dssp ------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTTT--HHHHHHTT----------------
T ss_pred --ccCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHH--HHHHHHcC----------------
Confidence 122357889999999999999999999999999999998 999997643221 11111110
Q ss_pred hhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHH
Q 005278 651 EQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEK 695 (704)
Q Consensus 651 ~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~ 695 (704)
.....+..++..+.+++..||+.||++|||+.|+++.|+++...
T Consensus 403 -~~~~~p~~~~~~l~~li~~cl~~dp~~Rpt~~~l~~~L~~i~~~ 446 (450)
T 1k9a_A 403 -YKMDAPDGCPPAVYDVMKNCWHLDAATRPTFLQLREQLEHIRTH 446 (450)
T ss_dssp -CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred -CCCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHh
Confidence 01122335667889999999999999999999999999998764
No 63
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=100.00 E-value=3e-41 Score=344.96 Aligned_cols=261 Identities=25% Similarity=0.369 Sum_probs=206.1
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccc---hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEE
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL---ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALV 489 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 489 (704)
.++|++.+.||+|+||.||+|+.. +++.||+|++.... ....+.+.+|+.++++++||||+++++++.+.+..++|
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv 89 (294)
T 4eqm_A 10 NERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLV 89 (294)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEE
T ss_pred hccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEE
Confidence 467999999999999999999854 68999999985432 23446789999999999999999999999999999999
Q ss_pred EeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCC
Q 005278 490 LEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGD 569 (704)
Q Consensus 490 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~ 569 (704)
|||+++|+|.+++...+ .+++..+..++.|++.|++||| +.+|+||||||+||+++.++.+||+|||+++......
T Consensus 90 ~e~~~g~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 165 (294)
T 4eqm_A 90 MEYIEGPTLSEYIESHG-PLSVDTAINFTNQILDGIKHAH---DMRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETS 165 (294)
T ss_dssp EECCCSCBHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCSSSTTC----
T ss_pred EeCCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEEeCCCcccccccc
Confidence 99999999999998654 4899999999999999999995 4789999999999999999999999999998764332
Q ss_pred CcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccchh
Q 005278 570 DSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLVR 649 (704)
Q Consensus 570 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (704)
. .......||+.|+|||.+.+..++.++||||+|+++|||+||+.||.+.... ..............
T Consensus 166 ~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~-----~~~~~~~~~~~~~~------- 232 (294)
T 4eqm_A 166 L-TQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAV-----SIAIKHIQDSVPNV------- 232 (294)
T ss_dssp ----------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHH-----HHHHHHHSSCCCCH-------
T ss_pred c-cccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChH-----HHHHHHhhccCCCc-------
Confidence 1 1223456999999999999999999999999999999999999999763221 11111111110000
Q ss_pred hhhhhhhhHHHHHHHHHHHhhhcCCCCCCCC-CHHHHHHHHHHhHH
Q 005278 650 EEQAFSVKIDCLLSIMHLALDCCMESPEQRV-SMKDAAAKLKKIKE 694 (704)
Q Consensus 650 ~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rp-t~~ev~~~L~~~~~ 694 (704)
......+++..+.+++.+|++.||++|| +++++.+.|+++..
T Consensus 233 ---~~~~~~~~~~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~~ 275 (294)
T 4eqm_A 233 ---TTDVRKDIPQSLSNVILRATEKDKANRYKTIQEMKDDLSSVLH 275 (294)
T ss_dssp ---HHHSCTTSCHHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTSSS
T ss_pred ---chhcccCCCHHHHHHHHHHhcCCHhHccccHHHHHHHHHHHHh
Confidence 0111223466788999999999999999 89999999887643
No 64
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=100.00 E-value=8.7e-41 Score=340.76 Aligned_cols=255 Identities=27% Similarity=0.434 Sum_probs=205.2
Q ss_pred hCCCCccccccccCceEEEEEEE-CCCCEEEEEEeeccchh-------hhHHHHHHHHHHHhcCCCCCceEEeeeeeCCe
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTL-FDGTNVAIKVFNLQLER-------ASRSFDSECEILRSIRHRNLIKIISNCCNIDF 485 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~-------~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~ 485 (704)
.++|+..+.||+|+||.||+|+. .+++.||+|++...... ..+.+.+|++++++++||||+++++++.+..
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~- 96 (287)
T 4f0f_A 18 DNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP- 96 (287)
T ss_dssp STTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT-
T ss_pred hccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC-
Confidence 36888999999999999999996 47899999998654321 1167899999999999999999999987665
Q ss_pred EEEEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCc-----EEEeeec
Q 005278 486 KALVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMT-----AHVSDFG 560 (704)
Q Consensus 486 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~-----~kl~Dfg 560 (704)
++||||+++|+|.+++......+++..+..++.|++.|++|||. +..+|+||||||+||+++.++. +||+|||
T Consensus 97 -~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~-~~~~ivH~dikp~Nil~~~~~~~~~~~~kl~Dfg 174 (287)
T 4f0f_A 97 -RMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQN-QNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFG 174 (287)
T ss_dssp -EEEEECCTTCBHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHT-SSSCCBCSCCSGGGEEESCCCTTCSCCEEECCCT
T ss_pred -eEEEEecCCCCHHHHHhcccCCccHHHHHHHHHHHHHHHHHHHh-CCCCeecCCCCcceEEEeccCCCCceeEEeCCCC
Confidence 69999999999999998777779999999999999999999965 2233999999999999988776 9999999
Q ss_pred cceecCCCCCcceeccccccccccCCccc--CCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCC
Q 005278 561 ISKLLGEGDDSVIQTMTIATIGYMAPEYG--SEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDG 638 (704)
Q Consensus 561 la~~~~~~~~~~~~~~~~gt~~y~aPE~~--~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~ 638 (704)
+++.... ......||+.|+|||++ ....++.++|||||||++|||++|+.||...................
T Consensus 175 ~~~~~~~-----~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~-- 247 (287)
T 4f0f_A 175 LSQQSVH-----SVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKFINMIREEGL-- 247 (287)
T ss_dssp TCBCCSS-----CEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHHHHHHHHHHSCC--
T ss_pred ccccccc-----cccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccHHHHHHHHhccCC--
Confidence 9985432 23345799999999998 45568899999999999999999999997644332222222111100
Q ss_pred cchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHh
Q 005278 639 LTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKI 692 (704)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~ 692 (704)
....+..++..+.+++..||+.||++||++.|+++.|+++
T Consensus 248 --------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l 287 (287)
T 4f0f_A 248 --------------RPTIPEDCPPRLRNVIELCWSGDPKKRPHFSYIVKELSEL 287 (287)
T ss_dssp --------------CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTC
T ss_pred --------------CCCCCcccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhC
Confidence 0111224456788999999999999999999999999864
No 65
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=100.00 E-value=2.5e-41 Score=343.52 Aligned_cols=259 Identities=22% Similarity=0.356 Sum_probs=200.1
Q ss_pred hCCCCccccccccCceEEEEEEECC----CCEEEEEEeeccc-hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEE
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLFD----GTNVAIKVFNLQL-ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKAL 488 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~~----~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 488 (704)
.++|+..+.||+|+||.||+|.... +..||+|++.... ....+.+.+|+.++++++||||+++++++. .+..++
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~l 92 (281)
T 1mp8_A 14 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVWI 92 (281)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSCEE
T ss_pred hHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEc-cCccEE
Confidence 4678889999999999999998642 4579999986543 334567899999999999999999999985 456789
Q ss_pred EEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCC
Q 005278 489 VLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEG 568 (704)
Q Consensus 489 v~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~ 568 (704)
||||+++|+|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 93 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 169 (281)
T 1mp8_A 93 IMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDS 169 (281)
T ss_dssp EEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECC----------
T ss_pred EEecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecccccHHHEEECCCCCEEECccccccccCcc
Confidence 99999999999999877767999999999999999999995 468999999999999999999999999999876543
Q ss_pred CCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhh-CCCCCCccccccccHHHHHHhhcCCCcchhccccc
Q 005278 569 DDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFT-RKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANL 647 (704)
Q Consensus 569 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (704)
.. .......+|+.|+|||++.+..++.++||||||+++|||++ |..||.+.... .....+.....
T Consensus 170 ~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~~--~~~~~i~~~~~----------- 235 (281)
T 1mp8_A 170 TY-YKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNN--DVIGRIENGER----------- 235 (281)
T ss_dssp ----------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGG--GHHHHHHTTCC-----------
T ss_pred cc-cccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCHH--HHHHHHHcCCC-----------
Confidence 22 12233457889999999988899999999999999999997 99999764322 12222111100
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHHh
Q 005278 648 VREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEKF 696 (704)
Q Consensus 648 ~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~~ 696 (704)
...+..++..+.+++..||+.||++||++.|+++.|+++.+.-
T Consensus 236 ------~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~ 278 (281)
T 1mp8_A 236 ------LPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEEE 278 (281)
T ss_dssp ------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred ------CCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHh
Confidence 1112244567889999999999999999999999999987654
No 66
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=100.00 E-value=4.3e-41 Score=350.75 Aligned_cols=262 Identities=25% Similarity=0.417 Sum_probs=213.1
Q ss_pred hCCCCccccccccCceEEEEEEEC--------CCCEEEEEEeeccc-hhhhHHHHHHHHHHHhc-CCCCCceEEeeeeeC
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF--------DGTNVAIKVFNLQL-ERASRSFDSECEILRSI-RHRNLIKIISNCCNI 483 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~--------~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~ 483 (704)
.++|...+.||+|+||.||+|+.. ++..||||++.... ....+.+.+|+++++++ +||||+++++++...
T Consensus 34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~ 113 (334)
T 2pvf_A 34 RDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD 113 (334)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred HhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEccC
Confidence 468889999999999999999863 46789999997543 33456789999999999 899999999999999
Q ss_pred CeEEEEEeccCCCCHHHHHhhCC---------------CccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeee
Q 005278 484 DFKALVLEFMPNGSLEKWLYSHN---------------YFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILL 548 (704)
Q Consensus 484 ~~~~lv~e~~~~gsL~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~ 548 (704)
+..++||||+++|+|.+++.... ..+++..++.++.|++.||+||| +.+|+||||||+||++
T Consensus 114 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll 190 (334)
T 2pvf_A 114 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLA---SQKCIHRDLAARNVLV 190 (334)
T ss_dssp SCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEE
T ss_pred CceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCccceEEE
Confidence 99999999999999999998543 24889999999999999999995 4689999999999999
Q ss_pred CCCCcEEEeeeccceecCCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhh-CCCCCCccccccccH
Q 005278 549 DENMTAHVSDFGISKLLGEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFT-RKKPTNEIFIGEMSL 627 (704)
Q Consensus 549 ~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-g~~p~~~~~~~~~~~ 627 (704)
+.++.+||+|||+++...............+|+.|+|||++.+..++.++||||||+++|||++ |+.||.+.... ..
T Consensus 191 ~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~--~~ 268 (334)
T 2pvf_A 191 TENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVE--EL 268 (334)
T ss_dssp CTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCHH--HH
T ss_pred cCCCCEEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCCHH--HH
Confidence 9999999999999988765433333344567889999999988889999999999999999999 99999763211 11
Q ss_pred HHHHHhhcCCCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHHhh
Q 005278 628 KHWVKESLPDGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEKFL 697 (704)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~ 697 (704)
...+..... ...+..++..+.+++..||+.||++||++.|+++.|+++.....
T Consensus 269 ~~~~~~~~~-----------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~l~~~~~ 321 (334)
T 2pvf_A 269 FKLLKEGHR-----------------MDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTLTT 321 (334)
T ss_dssp HHHHHHTCC-----------------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHhcCCC-----------------CCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhccc
Confidence 111111100 01122345678899999999999999999999999999876543
No 67
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=100.00 E-value=2.1e-41 Score=351.56 Aligned_cols=262 Identities=25% Similarity=0.429 Sum_probs=195.7
Q ss_pred HHhCCCCccccccccCceEEEEEEECC-C---CEEEEEEeeccc--hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCe
Q 005278 412 RATNGFNECNLLGTGSFGSVYKGTLFD-G---TNVAIKVFNLQL--ERASRSFDSECEILRSIRHRNLIKIISNCCNIDF 485 (704)
Q Consensus 412 ~~~~~~~~~~~ig~G~~g~V~~~~~~~-~---~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~ 485 (704)
...++|+..+.||+|+||.||+|+... + ..||||++.... ....+.+.+|++++++++||||+++++++.....
T Consensus 20 i~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 99 (323)
T 3qup_A 20 IPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRA 99 (323)
T ss_dssp CC---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC--
T ss_pred cChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeecccc
Confidence 345689999999999999999998543 3 279999987542 3445779999999999999999999999987665
Q ss_pred E------EEEEeccCCCCHHHHHhhC-----CCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcE
Q 005278 486 K------ALVLEFMPNGSLEKWLYSH-----NYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTA 554 (704)
Q Consensus 486 ~------~lv~e~~~~gsL~~~l~~~-----~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~ 554 (704)
. ++||||+++|+|.+++... ...+++..++.++.|++.||+||| +.+|+||||||+||+++.++.+
T Consensus 100 ~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH---~~~ivH~Dikp~NIli~~~~~~ 176 (323)
T 3qup_A 100 KGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLS---SRNFIHRDLAARNCMLAEDMTV 176 (323)
T ss_dssp -----CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTSCE
T ss_pred ccCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHH---cCCcccCCCCcceEEEcCCCCE
Confidence 5 8999999999999999743 225899999999999999999995 4689999999999999999999
Q ss_pred EEeeeccceecCCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhh-CCCCCCccccccccHHHHHHh
Q 005278 555 HVSDFGISKLLGEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFT-RKKPTNEIFIGEMSLKHWVKE 633 (704)
Q Consensus 555 kl~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~ 633 (704)
||+|||+++...............+++.|+|||.+.+..++.++|||||||++|||++ |..||.+....+ .......
T Consensus 177 kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~--~~~~~~~ 254 (323)
T 3qup_A 177 CVADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENAE--IYNYLIG 254 (323)
T ss_dssp EECCCCC-----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGG--HHHHHHT
T ss_pred EEeeccccccccccccccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccChHH--HHHHHhc
Confidence 9999999987755443333444567889999999999999999999999999999999 899997643221 1111111
Q ss_pred hcCCCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHH
Q 005278 634 SLPDGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEK 695 (704)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~ 695 (704)
.. ....+..++..+.+++.+||+.||++||++.|+++.|+++.+.
T Consensus 255 ~~-----------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~ 299 (323)
T 3qup_A 255 GN-----------------RLKQPPECMEEVYDLMYQCWSADPKQRPSFTCLRMELENILGH 299 (323)
T ss_dssp TC-----------------CCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred CC-----------------CCCCCCccCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence 00 0111223456788999999999999999999999999998653
No 68
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=100.00 E-value=1.5e-40 Score=351.32 Aligned_cols=252 Identities=22% Similarity=0.298 Sum_probs=207.5
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEEec
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQLERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVLEF 492 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 492 (704)
.++|++.+.||+|+||.||+|... +|+.||+|++..........+.+|++++++++||||+++++++.+....++||||
T Consensus 50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E~ 129 (387)
T 1kob_A 50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEF 129 (387)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEEC
T ss_pred ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEEc
Confidence 467999999999999999999865 6899999999766555566899999999999999999999999999999999999
Q ss_pred cCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCC--CCcEEEeeeccceecCCCCC
Q 005278 493 MPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDE--NMTAHVSDFGISKLLGEGDD 570 (704)
Q Consensus 493 ~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~--~~~~kl~Dfgla~~~~~~~~ 570 (704)
+++|+|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++. ++.+||+|||+++......
T Consensus 130 ~~gg~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~~- 205 (387)
T 1kob_A 130 LSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMH---EHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDE- 205 (387)
T ss_dssp CCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTS-
T ss_pred CCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecccchHHeEEecCCCCceEEEecccceecCCCc-
Confidence 9999999999877667999999999999999999995 478999999999999974 5789999999999875432
Q ss_pred cceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccchhh
Q 005278 571 SVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLVRE 650 (704)
Q Consensus 571 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (704)
......||+.|+|||++.+..++.++|||||||++|||++|..||.+... ......+...... . +
T Consensus 206 --~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~--~~~~~~i~~~~~~-~----~------ 270 (387)
T 1kob_A 206 --IVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDD--LETLQNVKRCDWE-F----D------ 270 (387)
T ss_dssp --CEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSH--HHHHHHHHHCCCC-C----C------
T ss_pred --ceeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCH--HHHHHHHHhCCCC-C----C------
Confidence 22344799999999999999999999999999999999999999976321 1111111110000 0 0
Q ss_pred hhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 651 EQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 651 ~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
......++.++.+++.+||+.||++||++.|+++
T Consensus 271 ---~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~ 304 (387)
T 1kob_A 271 ---EDAFSSVSPEAKDFIKNLLQKEPRKRLTVHDALE 304 (387)
T ss_dssp ---SSTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred ---ccccccCCHHHHHHHHHHcCCChhHCcCHHHHhh
Confidence 0011234567889999999999999999999976
No 69
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=100.00 E-value=3.1e-40 Score=341.98 Aligned_cols=272 Identities=22% Similarity=0.277 Sum_probs=211.2
Q ss_pred CCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccc-hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCC--eEEEEE
Q 005278 415 NGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL-ERASRSFDSECEILRSIRHRNLIKIISNCCNID--FKALVL 490 (704)
Q Consensus 415 ~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~--~~~lv~ 490 (704)
++|.+.+.||+|+||+||+|+.. +++.||||++.... ....+.+.+|++++++++||||+++++++.... ..++||
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~ 88 (319)
T 4euu_A 9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIM 88 (319)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEE
T ss_pred CCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEEE
Confidence 57888999999999999999965 58999999987543 234567889999999999999999999988755 779999
Q ss_pred eccCCCCHHHHHhhCC--CccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeee----CCCCcEEEeeecccee
Q 005278 491 EFMPNGSLEKWLYSHN--YFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILL----DENMTAHVSDFGISKL 564 (704)
Q Consensus 491 e~~~~gsL~~~l~~~~--~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~----~~~~~~kl~Dfgla~~ 564 (704)
||+++|+|.+++.... ..+++..++.++.|++.||+||| +.+|+||||||+||++ +.++.+||+|||+++.
T Consensus 89 e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~~ 165 (319)
T 4euu_A 89 EFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLR---ENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARE 165 (319)
T ss_dssp ECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEECTTSCEEEEECCCTTCEE
T ss_pred eCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHEEEeccCCCCceEEEccCCCcee
Confidence 9999999999998543 33899999999999999999995 4689999999999999 7888899999999988
Q ss_pred cCCCCCcceeccccccccccCCcccC--------CCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHH---HHHHh
Q 005278 565 LGEGDDSVIQTMTIATIGYMAPEYGS--------EGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLK---HWVKE 633 (704)
Q Consensus 565 ~~~~~~~~~~~~~~gt~~y~aPE~~~--------~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~---~~~~~ 633 (704)
...... .....||+.|+|||++. +..++.++|||||||++|||+||+.||........... .....
T Consensus 166 ~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~ 242 (319)
T 4euu_A 166 LEDDEQ---FVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITG 242 (319)
T ss_dssp CCTTCC---BCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGGCHHHHHHHHHH
T ss_pred cCCCCc---eeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccchhHHHHHHHhcC
Confidence 754332 23456999999999875 57789999999999999999999999975433222221 22222
Q ss_pred hcCCCcchhc---cccchh---hhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHh
Q 005278 634 SLPDGLTEVV---DANLVR---EEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKI 692 (704)
Q Consensus 634 ~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~ 692 (704)
..+..+.... ...+.. ...........+..+.+++..||+.||++||+++|+++...+.
T Consensus 243 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~d~ 307 (319)
T 4euu_A 243 KPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDI 307 (319)
T ss_dssp CCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHH
T ss_pred CCcccchhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccHHH
Confidence 1111111110 000000 0011123456678899999999999999999999999887654
No 70
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=100.00 E-value=9.6e-41 Score=345.43 Aligned_cols=274 Identities=26% Similarity=0.414 Sum_probs=212.5
Q ss_pred CCccccccccCceEEEEEEEC-----CCCEEEEEEeeccc-hhhhHHHHHHHHHHHhcCCCCCceEEeeeee--CCeEEE
Q 005278 417 FNECNLLGTGSFGSVYKGTLF-----DGTNVAIKVFNLQL-ERASRSFDSECEILRSIRHRNLIKIISNCCN--IDFKAL 488 (704)
Q Consensus 417 ~~~~~~ig~G~~g~V~~~~~~-----~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~--~~~~~l 488 (704)
|+..+.||+|+||+||++.+. +++.||||++.... ....+.+.+|++++++++||||+++++++.+ ....++
T Consensus 33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~l 112 (318)
T 3lxp_A 33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQL 112 (318)
T ss_dssp EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEEE
T ss_pred HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEEE
Confidence 388899999999999998653 58899999997653 3445679999999999999999999999987 467899
Q ss_pred EEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCC
Q 005278 489 VLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEG 568 (704)
Q Consensus 489 v~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~ 568 (704)
||||+++|+|.+++.... +++..++.++.|++.|++||| +.+|+||||||+||+++.++.+||+|||++......
T Consensus 113 v~e~~~~~~L~~~l~~~~--~~~~~~~~i~~~l~~~l~~LH---~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~ 187 (318)
T 3lxp_A 113 VMEYVPLGSLRDYLPRHS--IGLAQLLLFAQQICEGMAYLH---AQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEG 187 (318)
T ss_dssp EECCCTTCBHHHHGGGSC--CCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCGGGCEECCTT
T ss_pred EEecccCCcHHHHHhhCC--CCHHHHHHHHHHHHHHHHHHH---hCCccCCCCchheEEEcCCCCEEECCcccccccccc
Confidence 999999999999998654 899999999999999999995 478999999999999999999999999999987554
Q ss_pred CCc-ceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCC-cchhcccc
Q 005278 569 DDS-VIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDG-LTEVVDAN 646 (704)
Q Consensus 569 ~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 646 (704)
... .......+|+.|+|||++.+..++.++||||||+++|||+||+.||............ .... ........
T Consensus 188 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 262 (318)
T 3lxp_A 188 HEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIG-----IAQGQMTVLRLTE 262 (318)
T ss_dssp CSEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHC-----SCCHHHHHHHHHH
T ss_pred ccccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhhhhhhc-----ccccchhHHHHHH
Confidence 322 1233446888999999999888999999999999999999999998753221100000 0000 00000000
Q ss_pred chhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHHhhhhh
Q 005278 647 LVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEKFLDDV 700 (704)
Q Consensus 647 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~~~~ 700 (704)
..........+..++..+.+++..||+.||++||++.|+++.|+++.+++..+.
T Consensus 263 ~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~~~~~ 316 (318)
T 3lxp_A 263 LLERGERLPRPDKCPAEVYHLMKNCWETEASFRPTFENLIPILKTVHEKYQGQA 316 (318)
T ss_dssp HHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHHC--
T ss_pred HHhcccCCCCCccccHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHHhhccCC
Confidence 000011112233456789999999999999999999999999999999887653
No 71
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.3e-41 Score=348.80 Aligned_cols=246 Identities=26% Similarity=0.405 Sum_probs=201.5
Q ss_pred hCCCCccccccccCceEEEEEEE-CCCCEEEEEEeeccc---hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEE
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTL-FDGTNVAIKVFNLQL---ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALV 489 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 489 (704)
.++|.+.+.||+|+||.||+|+. .+++.||||++.... ......+.+|+.+++.++||||+++++++...+..++|
T Consensus 8 i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv 87 (336)
T 3h4j_B 8 IGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMV 87 (336)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence 36899999999999999999996 578999999987543 22345789999999999999999999999999999999
Q ss_pred EeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCC
Q 005278 490 LEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGD 569 (704)
Q Consensus 490 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~ 569 (704)
|||+ +|+|.+++...+ .+++..+..++.|++.|++|||. .+|+||||||+||+++.++.+||+|||++.......
T Consensus 88 ~E~~-~g~l~~~l~~~~-~l~~~~~~~i~~qi~~aL~~LH~---~givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~~~ 162 (336)
T 3h4j_B 88 IEYA-GGELFDYIVEKK-RMTEDEGRRFFQQIICAIEYCHR---HKIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGN 162 (336)
T ss_dssp ECCC-CEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHHH---HTCCCCCCSTTTEEECTTCCEEECCSSCTBTTTTSB
T ss_pred EECC-CCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCchhhEEEcCCCCEEEEEeccceeccCCc
Confidence 9999 789999987654 48999999999999999999964 689999999999999999999999999998764432
Q ss_pred CcceeccccccccccCCcccCCCCC-CcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccch
Q 005278 570 DSVIQTMTIATIGYMAPEYGSEGII-SPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLV 648 (704)
Q Consensus 570 ~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (704)
. .....||+.|+|||++.+..+ ++++||||+||++|+|++|+.||.+...... ...+...
T Consensus 163 ~---~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~-------------~~~i~~~--- 223 (336)
T 3h4j_B 163 F---LKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPNL-------------FKKVNSC--- 223 (336)
T ss_dssp T---TCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSSTTC-------------BCCCCSS---
T ss_pred c---cccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHHHH-------------HHHHHcC---
Confidence 2 234569999999999988775 7899999999999999999999976321110 0000000
Q ss_pred hhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 649 REEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 649 ~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
....+..++..+.+++.+||+.||++|||++|+++
T Consensus 224 ----~~~~p~~~s~~~~~li~~~L~~dP~~Rpt~~eil~ 258 (336)
T 3h4j_B 224 ----VYVMPDFLSPGAQSLIRRMIVADPMQRITIQEIRR 258 (336)
T ss_dssp ----CCCCCTTSCHHHHHHHHTTSCSSGGGSCCHHHHTT
T ss_pred ----CCCCcccCCHHHHHHHHHHcCCChhHCcCHHHHHh
Confidence 00112234567889999999999999999999965
No 72
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=100.00 E-value=8.6e-41 Score=346.92 Aligned_cols=258 Identities=24% Similarity=0.419 Sum_probs=205.6
Q ss_pred CCCCccccccccCceEEEEEEEC-CCCE----EEEEEeeccc-hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEE
Q 005278 415 NGFNECNLLGTGSFGSVYKGTLF-DGTN----VAIKVFNLQL-ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKAL 488 (704)
Q Consensus 415 ~~~~~~~~ig~G~~g~V~~~~~~-~~~~----vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 488 (704)
++|+..+.||+|+||+||+|+.. +++. ||+|.+.... ......+.+|+.++++++||||+++++++. .+..++
T Consensus 13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~ 91 (325)
T 3kex_A 13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP-GSSLQL 91 (325)
T ss_dssp TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC-BSSEEE
T ss_pred hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc-CCccEE
Confidence 57888999999999999999864 4554 7777765432 223356788999999999999999999986 456789
Q ss_pred EEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCC
Q 005278 489 VLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEG 568 (704)
Q Consensus 489 v~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~ 568 (704)
||||+++|+|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 92 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~ 168 (325)
T 3kex_A 92 VTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLE---EHGMVHRNLAARNVLLKSPSQVQVADFGVADLLPPD 168 (325)
T ss_dssp EEECCTTCBSHHHHHSSGGGSCTTHHHHHHHHHHHHHHHHH---HTTCCCSCCSSTTEEESSSSCEEECSCSGGGGSCCC
T ss_pred EEEeCCCCCHHHHHHHccccCCHHHHHHHHHHHHHHHHHHH---hCCCCCCccchheEEECCCCeEEECCCCcccccCcc
Confidence 99999999999999877667899999999999999999995 468999999999999999999999999999987655
Q ss_pred CCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhh-CCCCCCccccccccHHHHHHhhcCCCcchhccccc
Q 005278 569 DDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFT-RKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANL 647 (704)
Q Consensus 569 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (704)
..........+|+.|+|||++.+..++.++|||||||++|||+| |+.||.+.... .....+.....
T Consensus 169 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~--~~~~~~~~~~~----------- 235 (325)
T 3kex_A 169 DKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLA--EVPDLLEKGER----------- 235 (325)
T ss_dssp TTCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTT--HHHHHHHTTCB-----------
T ss_pred cccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCHH--HHHHHHHcCCC-----------
Confidence 44444455678889999999998999999999999999999999 99999764321 12222221110
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHH
Q 005278 648 VREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEK 695 (704)
Q Consensus 648 ~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~ 695 (704)
...+..++..+.+++.+||+.||++||++.|+++.|+++.+.
T Consensus 236 ------~~~~~~~~~~~~~li~~~l~~dp~~Rps~~el~~~l~~~~~~ 277 (325)
T 3kex_A 236 ------LAQPQICTIDVYMVMVKCWMIDENIRPTFKELANEFTRMARD 277 (325)
T ss_dssp ------CCCCTTBCTTTTHHHHHHTCSCTTTSCCHHHHHHHHHHHTTS
T ss_pred ------CCCCCcCcHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhc
Confidence 011112344577899999999999999999999999988543
No 73
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=100.00 E-value=4.2e-41 Score=340.06 Aligned_cols=254 Identities=26% Similarity=0.418 Sum_probs=195.2
Q ss_pred hCCCCccccccccCceEEEEEEECCCCEEEEEEeeccch----hhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEE
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLFDGTNVAIKVFNLQLE----RASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALV 489 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 489 (704)
.++|+..+.||+|+||.||+|+.. ++.||||++..... ...+.+.+|+++++.++||||+++++++.+.+..++|
T Consensus 6 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 84 (271)
T 3dtc_A 6 FAELTLEEIIGIGGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLV 84 (271)
T ss_dssp TTSEEEEEEEEEETTEEEEEEEET-TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEE
T ss_pred hhheeeeeeeccCCCeEEEEEEEc-CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEE
Confidence 357888999999999999999964 88999999865432 2346789999999999999999999999999999999
Q ss_pred EeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCC--------CCcEEEeeecc
Q 005278 490 LEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDE--------NMTAHVSDFGI 561 (704)
Q Consensus 490 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~--------~~~~kl~Dfgl 561 (704)
|||+++|+|.+++... .+++..++.++.|++.|++|||.....+|+||||||+||+++. ++.+||+|||+
T Consensus 85 ~e~~~~~~L~~~~~~~--~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg~ 162 (271)
T 3dtc_A 85 MEFARGGPLNRVLSGK--RIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGL 162 (271)
T ss_dssp EECCTTEEHHHHHTSS--CCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCCC
T ss_pred EEcCCCCCHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEccCCc
Confidence 9999999999998643 4899999999999999999997743344999999999999986 77899999999
Q ss_pred ceecCCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcch
Q 005278 562 SKLLGEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTE 641 (704)
Q Consensus 562 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (704)
+....... .....||+.|+|||.+.+..++.++||||||+++|||++|+.||........ .........
T Consensus 163 ~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~-----~~~~~~~~~-- 231 (271)
T 3dtc_A 163 AREWHRTT----KMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAV-----AYGVAMNKL-- 231 (271)
T ss_dssp -----------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCHHHH-----HHHHHTSCC--
T ss_pred cccccccc----ccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH-----HHhhhcCCC--
Confidence 98664322 2234689999999999988999999999999999999999999976322111 000000000
Q ss_pred hccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHh
Q 005278 642 VVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKI 692 (704)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~ 692 (704)
....+..++..+.+++.+||+.||++||++.|+++.|+++
T Consensus 232 -----------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~L~~l 271 (271)
T 3dtc_A 232 -----------ALPIPSTCPEPFAKLMEDCWNPDPHSRPSFTNILDQLTTI 271 (271)
T ss_dssp -----------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHC-
T ss_pred -----------CCCCCcccCHHHHHHHHHHhcCCcccCcCHHHHHHHHhcC
Confidence 0111223456788999999999999999999999999754
No 74
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=100.00 E-value=5.5e-41 Score=347.35 Aligned_cols=269 Identities=25% Similarity=0.379 Sum_probs=216.6
Q ss_pred HHHHHHhCCCCccccccccCceEEEEEEE------CCCCEEEEEEeeccc-hhhhHHHHHHHHHHHhc-CCCCCceEEee
Q 005278 408 LDIQRATNGFNECNLLGTGSFGSVYKGTL------FDGTNVAIKVFNLQL-ERASRSFDSECEILRSI-RHRNLIKIISN 479 (704)
Q Consensus 408 ~~~~~~~~~~~~~~~ig~G~~g~V~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv~l~~~ 479 (704)
.......++|...+.||+|+||.||+|+. .+++.||||++.... ....+.+.+|+.+++++ +||||++++++
T Consensus 20 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~ 99 (316)
T 2xir_A 20 SKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGA 99 (316)
T ss_dssp HHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred cceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeEEEE
Confidence 33444567899999999999999999974 246889999997643 23446789999999999 79999999999
Q ss_pred eeeCC-eEEEEEeccCCCCHHHHHhhCCC---------------ccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCC
Q 005278 480 CCNID-FKALVLEFMPNGSLEKWLYSHNY---------------FLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKP 543 (704)
Q Consensus 480 ~~~~~-~~~lv~e~~~~gsL~~~l~~~~~---------------~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~ 543 (704)
+...+ ..++||||+++|+|.+++..... .+++..++.++.|++.|++||| +.+|+||||||
T Consensus 100 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~i~H~dikp 176 (316)
T 2xir_A 100 CTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAA 176 (316)
T ss_dssp ECCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSG
T ss_pred EecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHH---hCCcccccCcc
Confidence 87754 58999999999999999986543 2789999999999999999995 46899999999
Q ss_pred CCeeeCCCCcEEEeeeccceecCCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhh-CCCCCCcccc
Q 005278 544 NNILLDENMTAHVSDFGISKLLGEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFT-RKKPTNEIFI 622 (704)
Q Consensus 544 ~Nil~~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-g~~p~~~~~~ 622 (704)
+||+++.++.+||+|||+++...............||+.|+|||++.+..++.++||||||+++|||+| |..||.....
T Consensus 177 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~ 256 (316)
T 2xir_A 177 RNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKI 256 (316)
T ss_dssp GGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCC
T ss_pred ceEEECCCCCEEECCCccccccccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCcccch
Confidence 999999999999999999987755444444455678999999999998999999999999999999998 9999976432
Q ss_pred ccccHHHHHHhhcCCCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHHhh
Q 005278 623 GEMSLKHWVKESLPDGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEKFL 697 (704)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~ 697 (704)
... .......... ...+..++..+.+++..||+.||++||++.|+++.|+++.+...
T Consensus 257 ~~~-~~~~~~~~~~-----------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~ 313 (316)
T 2xir_A 257 DEE-FCRRLKEGTR-----------------MRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQANA 313 (316)
T ss_dssp SHH-HHHHHHHTCC-----------------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC
T ss_pred hHH-HHHHhccCcc-----------------CCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhhhc
Confidence 221 1111111100 01111234568899999999999999999999999999876654
No 75
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=100.00 E-value=4.8e-40 Score=344.31 Aligned_cols=275 Identities=22% Similarity=0.353 Sum_probs=219.0
Q ss_pred HHHHHHhCCCCccccccccCceEEEEEEECCCCEEEEEEeeccchhhhHHHHHHHHHHHh--cCCCCCceEEeeeeeCC-
Q 005278 408 LDIQRATNGFNECNLLGTGSFGSVYKGTLFDGTNVAIKVFNLQLERASRSFDSECEILRS--IRHRNLIKIISNCCNID- 484 (704)
Q Consensus 408 ~~~~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~--l~h~niv~l~~~~~~~~- 484 (704)
.......++|...+.||+|+||.||+|+. +++.||||++... ....+.+|+++++. ++||||+++++++....
T Consensus 35 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~ 110 (342)
T 1b6c_B 35 LVQRTIARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKDNG 110 (342)
T ss_dssp HHHHHHHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCS
T ss_pred eecccccccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCch---hHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCC
Confidence 33345567899999999999999999987 5899999998643 34567788999888 78999999999998875
Q ss_pred ---eEEEEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhc-----CCCCcEecCCCCCCeeeCCCCcEEE
Q 005278 485 ---FKALVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHG-----HSTPMVHCDLKPNNILLDENMTAHV 556 (704)
Q Consensus 485 ---~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~-----h~~~ivH~dlk~~Nil~~~~~~~kl 556 (704)
..++||||+++|+|.+++... .+++..++.++.|++.|++|||.. ++.+|+||||||+||+++.++.+||
T Consensus 111 ~~~~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~NIll~~~~~~kL 188 (342)
T 1b6c_B 111 TWTQLWLVSDYHEHGSLFDYLNRY--TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCI 188 (342)
T ss_dssp SCCCEEEEECCCTTCBHHHHHHHC--CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCSGGGEEECTTSCEEE
T ss_pred ccceeEEEEeecCCCcHHHHHhcc--CccHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeeeCCCCHHHEEECCCCCEEE
Confidence 789999999999999999764 389999999999999999999731 2688999999999999999999999
Q ss_pred eeeccceecCCCCCcc--eeccccccccccCCcccCCC------CCCcccceeeHHHHHHHHhhC----------CCCCC
Q 005278 557 SDFGISKLLGEGDDSV--IQTMTIATIGYMAPEYGSEG------IISPKSDVYSYGILLMETFTR----------KKPTN 618 (704)
Q Consensus 557 ~Dfgla~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~s~Gv~l~el~tg----------~~p~~ 618 (704)
+|||++.......... ......||+.|+|||++.+. .++.++|||||||++|||+|| ..||.
T Consensus 189 ~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p~~ 268 (342)
T 1b6c_B 189 ADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYY 268 (342)
T ss_dssp CCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTT
T ss_pred EECCCceeccccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcccccccCcc
Confidence 9999998775443221 22345799999999998765 334689999999999999999 77887
Q ss_pred ccccccccHHHHHHhhcCCCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHHh
Q 005278 619 EIFIGEMSLKHWVKESLPDGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEKF 696 (704)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~~ 696 (704)
...........+............... .....+++..+.+++..||+.||++||++.||++.|+++.++.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L~~i~~~~ 338 (342)
T 1b6c_B 269 DLVPSDPSVEEMRKVVCEQKLRPNIPN--------RWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQE 338 (342)
T ss_dssp TTSCSSCCHHHHHHHHTTSCCCCCCCG--------GGGTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHHHHTT
T ss_pred ccCcCcccHHHHHHHHHHHHhCCCCcc--------cccchhHHHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHHh
Confidence 755555555555443322221111111 1122356778999999999999999999999999999997654
No 76
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=100.00 E-value=3.9e-41 Score=346.07 Aligned_cols=269 Identities=23% Similarity=0.373 Sum_probs=209.0
Q ss_pred CCCCccccccccCceEEEEEEE-----CCCCEEEEEEeeccc-hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeC--CeE
Q 005278 415 NGFNECNLLGTGSFGSVYKGTL-----FDGTNVAIKVFNLQL-ERASRSFDSECEILRSIRHRNLIKIISNCCNI--DFK 486 (704)
Q Consensus 415 ~~~~~~~~ig~G~~g~V~~~~~-----~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~--~~~ 486 (704)
+.|+..+.||+|+||.||+|++ .+++.||||++.... ....+.+.+|++++++++||||+++++++... ...
T Consensus 21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 100 (302)
T 4e5w_A 21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGI 100 (302)
T ss_dssp GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CCE
T ss_pred hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCceE
Confidence 4578889999999999999984 368999999987543 23446789999999999999999999999876 668
Q ss_pred EEEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecC
Q 005278 487 ALVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLG 566 (704)
Q Consensus 487 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~ 566 (704)
++||||+++|+|.+++......+++..++.++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++....
T Consensus 101 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~ 177 (302)
T 4e5w_A 101 KLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLG---SRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIE 177 (302)
T ss_dssp EEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCCTTCEECC
T ss_pred EEEEEeCCCCcHHHHHHhccccCCHHHHHHHHHHHHHHHHHhh---cCCcccCCCchheEEEcCCCCEEECccccccccc
Confidence 9999999999999999876667999999999999999999995 4789999999999999999999999999998875
Q ss_pred CCCCc-ceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcc---hh
Q 005278 567 EGDDS-VIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLT---EV 642 (704)
Q Consensus 567 ~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~ 642 (704)
..... .......||..|+|||++.+..++.++||||+|+++|||+||..|+.... ..+.....+.... ..
T Consensus 178 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~------~~~~~~~~~~~~~~~~~~ 251 (302)
T 4e5w_A 178 TDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPM------ALFLKMIGPTHGQMTVTR 251 (302)
T ss_dssp TTCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHH------HHHHHHHCSCCGGGHHHH
T ss_pred CCCcceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchh------hHHhhccCCcccccCHHH
Confidence 54322 22334568889999999998899999999999999999999999865421 1111110010000 00
Q ss_pred ccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhH
Q 005278 643 VDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIK 693 (704)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~ 693 (704)
.... .........+..++..+.+++.+||+.||++|||+.|+++.|+++.
T Consensus 252 ~~~~-~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~ll 301 (302)
T 4e5w_A 252 LVNT-LKEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALL 301 (302)
T ss_dssp HHHH-HHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHHH-HhccCCCCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHh
Confidence 0000 0000111223345678899999999999999999999999999874
No 77
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=2.6e-41 Score=340.79 Aligned_cols=257 Identities=26% Similarity=0.383 Sum_probs=212.0
Q ss_pred CCCCccccccccCceEEEEEEECCCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEEeccC
Q 005278 415 NGFNECNLLGTGSFGSVYKGTLFDGTNVAIKVFNLQLERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVLEFMP 494 (704)
Q Consensus 415 ~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~ 494 (704)
++|...+.||+|+||.||+|+..+++.||+|++..... ..+.+.+|++++++++||||+++++++.+.+..++||||++
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~ 86 (267)
T 3t9t_A 8 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFME 86 (267)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECCCT
T ss_pred hheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeCCC
Confidence 57888899999999999999988889999999975432 34678999999999999999999999999999999999999
Q ss_pred CCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCCCccee
Q 005278 495 NGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGDDSVIQ 574 (704)
Q Consensus 495 ~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~~~~~~ 574 (704)
+|+|.+++......+++..+..++.|++.|++||| +.+|+||||||+||+++.++.+||+|||++....... ....
T Consensus 87 ~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~-~~~~ 162 (267)
T 3t9t_A 87 HGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ-YTSS 162 (267)
T ss_dssp TCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHH-HHST
T ss_pred CCcHHHHHhhCcccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCchheEEECCCCCEEEccccccccccccc-cccc
Confidence 99999999887777899999999999999999995 4789999999999999999999999999998664321 1112
Q ss_pred ccccccccccCCcccCCCCCCcccceeeHHHHHHHHhh-CCCCCCccccccccHHHHHHhhcCCCcchhccccchhhhhh
Q 005278 575 TMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFT-RKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLVREEQA 653 (704)
Q Consensus 575 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (704)
....+++.|+|||++.+..++.++||||||+++|||++ |+.||...... .....+.....
T Consensus 163 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~--~~~~~i~~~~~----------------- 223 (267)
T 3t9t_A 163 TGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNS--EVVEDISTGFR----------------- 223 (267)
T ss_dssp TSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH--HHHHHHHTTCC-----------------
T ss_pred ccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCCHH--HHHHHHhcCCc-----------------
Confidence 23457889999999988889999999999999999999 89998763211 11111111000
Q ss_pred hhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHH
Q 005278 654 FSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEK 695 (704)
Q Consensus 654 ~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~ 695 (704)
...+..++..+.+++.+||+.||++||++.|+++.|+++.++
T Consensus 224 ~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~~ 265 (267)
T 3t9t_A 224 LYKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAES 265 (267)
T ss_dssp CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred CCCCccCcHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhc
Confidence 001112345688999999999999999999999999998764
No 78
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=100.00 E-value=2.7e-41 Score=352.26 Aligned_cols=267 Identities=22% Similarity=0.380 Sum_probs=215.6
Q ss_pred HHHhCCCCccccccccCceEEEEEEECC-C-----CEEEEEEeeccc-hhhhHHHHHHHHHHHhc-CCCCCceEEeeeee
Q 005278 411 QRATNGFNECNLLGTGSFGSVYKGTLFD-G-----TNVAIKVFNLQL-ERASRSFDSECEILRSI-RHRNLIKIISNCCN 482 (704)
Q Consensus 411 ~~~~~~~~~~~~ig~G~~g~V~~~~~~~-~-----~~vavK~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~ 482 (704)
....++|...+.||+|+||.||+|.... + ..||+|.+.... ....+.+.+|+++++++ +||||+++++++..
T Consensus 42 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~ 121 (333)
T 2i1m_A 42 EFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTH 121 (333)
T ss_dssp BCCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred cCCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEec
Confidence 3445789999999999999999998642 2 479999987543 23456789999999999 89999999999999
Q ss_pred CCeEEEEEeccCCCCHHHHHhhC-------------CCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeC
Q 005278 483 IDFKALVLEFMPNGSLEKWLYSH-------------NYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLD 549 (704)
Q Consensus 483 ~~~~~lv~e~~~~gsL~~~l~~~-------------~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~ 549 (704)
.+..++||||+++|+|.+++... ...+++..++.++.|++.||+|||. .+|+||||||+||+++
T Consensus 122 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dlkp~NIl~~ 198 (333)
T 2i1m_A 122 GGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLAS---KNCIHRDVAARNVLLT 198 (333)
T ss_dssp SSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGCEEE
T ss_pred CCceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhc---CCcccCCcccceEEEC
Confidence 99999999999999999999743 2347899999999999999999964 6899999999999999
Q ss_pred CCCcEEEeeeccceecCCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhh-CCCCCCccccccccHH
Q 005278 550 ENMTAHVSDFGISKLLGEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFT-RKKPTNEIFIGEMSLK 628 (704)
Q Consensus 550 ~~~~~kl~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-g~~p~~~~~~~~~~~~ 628 (704)
.++.+||+|||+++...............+|+.|+|||++.+..++.++||||||+++|||+| |..||.+..... ...
T Consensus 199 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~-~~~ 277 (333)
T 2i1m_A 199 NGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNS-KFY 277 (333)
T ss_dssp GGGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCSSH-HHH
T ss_pred CCCeEEECccccccccccccceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccchhH-HHH
Confidence 999999999999987654443333445567889999999988899999999999999999999 899997643221 111
Q ss_pred HHHHhhcCCCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHHhhh
Q 005278 629 HWVKESLPDGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEKFLD 698 (704)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~~ 698 (704)
......... ..+..++..+.+++..||+.||++||++.|+++.|+++.++...
T Consensus 278 ~~~~~~~~~-----------------~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~~~~ 330 (333)
T 2i1m_A 278 KLVKDGYQM-----------------AQPAFAPKNIYSIMQACWALEPTHRPTFQQICSFLQEQAQEDRR 330 (333)
T ss_dssp HHHHHTCCC-----------------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCC-----------------CCCCCCCHHHHHHHHHHhccChhhCcCHHHHHHHHHHHHHhhhc
Confidence 222211110 11112345788999999999999999999999999998766543
No 79
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=100.00 E-value=2.8e-40 Score=355.32 Aligned_cols=253 Identities=19% Similarity=0.269 Sum_probs=203.5
Q ss_pred HhCCCCccccccccCceEEEEEEE-CCCCEEEEEEeeccc--hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEE
Q 005278 413 ATNGFNECNLLGTGSFGSVYKGTL-FDGTNVAIKVFNLQL--ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALV 489 (704)
Q Consensus 413 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 489 (704)
..++|+..+.||+|+||+||+|.. .+|+.+|+|++.... ....+.+.+|+++++.++||||+++++++.+.+..++|
T Consensus 9 ~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv 88 (444)
T 3soa_A 9 FTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLI 88 (444)
T ss_dssp HHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEEE
T ss_pred ccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEEE
Confidence 456899999999999999999985 478999999987543 23456789999999999999999999999999999999
Q ss_pred EeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeC---CCCcEEEeeeccceecC
Q 005278 490 LEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLD---ENMTAHVSDFGISKLLG 566 (704)
Q Consensus 490 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~---~~~~~kl~Dfgla~~~~ 566 (704)
|||+++|+|.+++.... .+++..+..++.|++.|++||| +.+|+||||||+||+++ .++.+||+|||++....
T Consensus 89 ~E~~~gg~L~~~i~~~~-~~~e~~~~~i~~qil~aL~~lH---~~givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~~ 164 (444)
T 3soa_A 89 FDLVTGGELFEDIVARE-YYSEADASHCIQQILEAVLHCH---QMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVE 164 (444)
T ss_dssp ECCCBCCBHHHHHHHCS-CCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSSTTEEESBSSTTCCEEECCCSSCBCCC
T ss_pred EEeCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEEeccCCCCcEEEccCceeEEec
Confidence 99999999999998654 4899999999999999999995 46899999999999998 56789999999998765
Q ss_pred CCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhcccc
Q 005278 567 EGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDAN 646 (704)
Q Consensus 567 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (704)
.... ......||+.|+|||++.+..++.++||||+||++|+|++|..||.+... ......+...... .
T Consensus 165 ~~~~--~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~~--~~~~~~i~~~~~~-~------- 232 (444)
T 3soa_A 165 GEQQ--AWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQ--HRLYQQIKAGAYD-F------- 232 (444)
T ss_dssp TTCC--BCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSSH--HHHHHHHHHTCCC-C-------
T ss_pred CCCc--eeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCccH--HHHHHHHHhCCCC-C-------
Confidence 4322 22345799999999999999999999999999999999999999965221 1111111110000 0
Q ss_pred chhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 647 LVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 647 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
..+....++..+.+++.+||+.||++|||+.|+++
T Consensus 233 ------~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~e~L~ 267 (444)
T 3soa_A 233 ------PSPEWDTVTPEAKDLINKMLTINPSKRITAAEALK 267 (444)
T ss_dssp ------CTTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred ------CccccccCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 00111234567889999999999999999999976
No 80
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=100.00 E-value=6.4e-41 Score=341.73 Aligned_cols=266 Identities=23% Similarity=0.284 Sum_probs=201.9
Q ss_pred CCCCccccccccCceEEEEEEECCCCEEEEEEeeccch--hhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEEec
Q 005278 415 NGFNECNLLGTGSFGSVYKGTLFDGTNVAIKVFNLQLE--RASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVLEF 492 (704)
Q Consensus 415 ~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 492 (704)
++|+..+.||+|+||+||+|+..+|+.||+|++..... ...+.+.+|++++++++||||+++++++...+..++||||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 81 (288)
T 1ob3_A 2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH 81 (288)
T ss_dssp CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEe
Confidence 57889999999999999999988899999999865432 2346788999999999999999999999999999999999
Q ss_pred cCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCCCcc
Q 005278 493 MPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGDDSV 572 (704)
Q Consensus 493 ~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~~~~ 572 (704)
+++ +|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.......
T Consensus 82 ~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-- 155 (288)
T 1ob3_A 82 LDQ-DLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCH---DRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVR-- 155 (288)
T ss_dssp CSE-EHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC-----
T ss_pred cCC-CHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCCEEEeECccccccCcccc--
Confidence 975 999999877667899999999999999999995 46899999999999999999999999999987643221
Q ss_pred eeccccccccccCCcccCC-CCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcC---CCcchh-----c
Q 005278 573 IQTMTIATIGYMAPEYGSE-GIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLP---DGLTEV-----V 643 (704)
Q Consensus 573 ~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~---~~~~~~-----~ 643 (704)
......||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+....+ .+......... ..+... .
T Consensus 156 ~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (288)
T 1ob3_A 156 KYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEAD-QLMRIFRILGTPNSKNWPNVTELPKY 234 (288)
T ss_dssp ------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCCCCTTTSTTGGGSTTC
T ss_pred ccccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHHHCCCChhhchhhhccccc
Confidence 2234468999999998865 458999999999999999999999997643211 11111111000 001000 0
Q ss_pred cccchhhh--hhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 644 DANLVREE--QAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 644 ~~~~~~~~--~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
++...... ........++..+.+++.+||+.||++|||++|+++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 280 (288)
T 1ob3_A 235 DPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALE 280 (288)
T ss_dssp CTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred ccccccccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 00000000 000111234567889999999999999999999964
No 81
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.5e-40 Score=344.94 Aligned_cols=250 Identities=22% Similarity=0.288 Sum_probs=203.8
Q ss_pred CCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccchh------hhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEE
Q 005278 415 NGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQLER------ASRSFDSECEILRSIRHRNLIKIISNCCNIDFKA 487 (704)
Q Consensus 415 ~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~------~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~ 487 (704)
++|...+.||+|+||.||+|+.. +|+.||+|++...... ..+.+.+|+.++++++||||+++++++.+....+
T Consensus 11 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~ 90 (326)
T 2y0a_A 11 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVI 90 (326)
T ss_dssp HHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred cceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence 46888999999999999999965 6899999998754321 3567999999999999999999999999999999
Q ss_pred EEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCC----cEEEeeeccce
Q 005278 488 LVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENM----TAHVSDFGISK 563 (704)
Q Consensus 488 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~----~~kl~Dfgla~ 563 (704)
+||||+++|+|.+++... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.++ .+||+|||+++
T Consensus 91 lv~e~~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~ 166 (326)
T 2y0a_A 91 LILELVAGGELFDFLAEK-ESLTEEEATEFLKQILNGVYYLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAH 166 (326)
T ss_dssp EEEECCCSCBHHHHHTTS-SCCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESCSSSSSCCEEECCCTTCE
T ss_pred EEEEcCCCCCHHHHHHhc-CCcCHHHHHHHHHHHHHHHHHHH---HCCeEcCCCCHHHEEEecCCCCCCCEEEEECCCCe
Confidence 999999999999999754 34899999999999999999995 47899999999999999887 89999999998
Q ss_pred ecCCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhc
Q 005278 564 LLGEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVV 643 (704)
Q Consensus 564 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (704)
....... .....||+.|+|||++.+..++.++|||||||++|||++|..||.+....+ .+... ....
T Consensus 167 ~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~-~~~~~-~~~~-------- 233 (326)
T 2y0a_A 167 KIDFGNE---FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQE-TLANV-SAVN-------- 233 (326)
T ss_dssp ECCTTSC---CCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHH-HHHHH-HHTC--------
T ss_pred ECCCCCc---cccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHH-HHHHH-HhcC--------
Confidence 7753322 234569999999999999999999999999999999999999996532110 01111 0000
Q ss_pred cccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 644 DANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
.... ......++..+.+++.+||+.||++|||+.|+++
T Consensus 234 -~~~~-----~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 271 (326)
T 2y0a_A 234 -YEFE-----DEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQ 271 (326)
T ss_dssp -CCCC-----HHHHTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred -CCcC-----ccccccCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 0000 0111234567889999999999999999999986
No 82
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=100.00 E-value=1.4e-41 Score=368.88 Aligned_cols=259 Identities=22% Similarity=0.390 Sum_probs=211.2
Q ss_pred HhCCCCccccccccCceEEEEEEECCCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEEec
Q 005278 413 ATNGFNECNLLGTGSFGSVYKGTLFDGTNVAIKVFNLQLERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVLEF 492 (704)
Q Consensus 413 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 492 (704)
..++|...+.||+|+||.||+|+..++..||||+++... ...+.+.+|++++++++||||+++++++. .+..++||||
T Consensus 186 ~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~~lv~e~ 263 (454)
T 1qcf_A 186 PRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIYIITEF 263 (454)
T ss_dssp CGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEECC
T ss_pred chHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCC-ccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCccEEEEee
Confidence 456788889999999999999999889999999997543 34678999999999999999999999986 5668999999
Q ss_pred cCCCCHHHHHhhC-CCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCCCc
Q 005278 493 MPNGSLEKWLYSH-NYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGDDS 571 (704)
Q Consensus 493 ~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~~~ 571 (704)
+++|+|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++...... .
T Consensus 264 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~-~ 339 (454)
T 1qcf_A 264 MAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIE---QRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNE-Y 339 (454)
T ss_dssp CTTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCSGGGEEECTTCCEEECSTTGGGGBCCHH-H
T ss_pred cCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCCHHHEEECCCCcEEEeeCCCceEcCCCc-e
Confidence 9999999999854 235788999999999999999995 4689999999999999999999999999998764321 1
Q ss_pred ceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhh-CCCCCCccccccccHHHHHHhhcCCCcchhccccchhh
Q 005278 572 VIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFT-RKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLVRE 650 (704)
Q Consensus 572 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (704)
.......+|+.|+|||++....++.++|||||||++|||+| |+.||.+....+ ....+...
T Consensus 340 ~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~~~--~~~~i~~~---------------- 401 (454)
T 1qcf_A 340 TAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPE--VIRALERG---------------- 401 (454)
T ss_dssp HTTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHH--HHHHHHHT----------------
T ss_pred eccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCHHH--HHHHHHcC----------------
Confidence 11223346789999999998899999999999999999999 999997632211 11111110
Q ss_pred hhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHHh
Q 005278 651 EQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEKF 696 (704)
Q Consensus 651 ~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~~ 696 (704)
...+.+..++..+.+++.+||+.||++|||+.+|++.|+++....
T Consensus 402 -~~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~~i~~~L~~~~~~~ 446 (454)
T 1qcf_A 402 -YRMPRPENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDDFYTAT 446 (454)
T ss_dssp -CCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSSSS
T ss_pred -CCCCCCCCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHHhcc
Confidence 011122345678899999999999999999999999999876543
No 83
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=100.00 E-value=3.6e-41 Score=350.01 Aligned_cols=274 Identities=26% Similarity=0.429 Sum_probs=214.6
Q ss_pred CCCCccccccccCceEEEEEEE-----CCCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCC--eEE
Q 005278 415 NGFNECNLLGTGSFGSVYKGTL-----FDGTNVAIKVFNLQLERASRSFDSECEILRSIRHRNLIKIISNCCNID--FKA 487 (704)
Q Consensus 415 ~~~~~~~~ig~G~~g~V~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~--~~~ 487 (704)
++|+..+.||+|+||.||+|+. .+++.||||++........+.+.+|++++++++||||+++++++...+ ..+
T Consensus 41 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 120 (326)
T 2w1i_A 41 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLK 120 (326)
T ss_dssp GGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----CCE
T ss_pred HHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCceE
Confidence 5688889999999999999984 368999999997665556678999999999999999999999986644 679
Q ss_pred EEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCC
Q 005278 488 LVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGE 567 (704)
Q Consensus 488 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~ 567 (704)
+||||+++|+|.+++......+++..++.++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++.....
T Consensus 121 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dikp~NIli~~~~~~kL~Dfg~~~~~~~ 197 (326)
T 2w1i_A 121 LIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLG---TKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQ 197 (326)
T ss_dssp EEECCCTTCBHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEEEETTEEEECCCTTCEECCS
T ss_pred EEEECCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---hCCEeccCCCcceEEEcCCCcEEEecCcchhhccc
Confidence 999999999999999987777999999999999999999995 47899999999999999999999999999988754
Q ss_pred CCCcc-eeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccc-
Q 005278 568 GDDSV-IQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDA- 645 (704)
Q Consensus 568 ~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 645 (704)
..... ......++..|+|||.+.+..++.++||||||+++|||+||..|+..... .+...............
T Consensus 198 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 271 (326)
T 2w1i_A 198 DKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPA------EFMRMIGNDKQGQMIVFH 271 (326)
T ss_dssp SCSEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHH------HHHHHHCTTCCTHHHHHH
T ss_pred cccccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHH------HHHHhhccccchhhhHHH
Confidence 43221 12234578889999999888899999999999999999999999764211 11100000000000000
Q ss_pred --cchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHHhh
Q 005278 646 --NLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEKFL 697 (704)
Q Consensus 646 --~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~ 697 (704)
.........+.+..++..+.+++..||+.||++||++.|+++.|+++++++.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~el~~~L~~l~~~l~ 325 (326)
T 2w1i_A 272 LIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDQMA 325 (326)
T ss_dssp HHHHHHTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHhc
Confidence 0000001112233456789999999999999999999999999999988764
No 84
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=100.00 E-value=2.4e-40 Score=346.90 Aligned_cols=251 Identities=20% Similarity=0.302 Sum_probs=202.8
Q ss_pred CCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccch-----hhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEE
Q 005278 415 NGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQLE-----RASRSFDSECEILRSIRHRNLIKIISNCCNIDFKAL 488 (704)
Q Consensus 415 ~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~-----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 488 (704)
++|+..+.||+|+||+||+|+.. +++.||||++..... ...+.+.+|+++++.++||||+++++++.+.+..++
T Consensus 24 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~l 103 (351)
T 3c0i_A 24 DVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLYM 103 (351)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred cceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEE
Confidence 57889999999999999999864 689999999865321 135678999999999999999999999999999999
Q ss_pred EEeccCCCCHHHHHhhC---CCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCc---EEEeeeccc
Q 005278 489 VLEFMPNGSLEKWLYSH---NYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMT---AHVSDFGIS 562 (704)
Q Consensus 489 v~e~~~~gsL~~~l~~~---~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~---~kl~Dfgla 562 (704)
||||+++|+|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||+++.++. +||+|||++
T Consensus 104 v~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a 180 (351)
T 3c0i_A 104 VFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCH---DNNIIHRDVKPHCVLLASKENSAPVKLGGFGVA 180 (351)
T ss_dssp EEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECSSSTTCCEEECCCTTC
T ss_pred EEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCChHHeEEecCCCCCcEEEecCcce
Confidence 99999999999888643 345899999999999999999995 468999999999999986654 999999999
Q ss_pred eecCCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchh
Q 005278 563 KLLGEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEV 642 (704)
Q Consensus 563 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (704)
....... .......||+.|+|||++.+..++.++||||+||++|||++|+.||.+... ............
T Consensus 181 ~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~--~~~~~i~~~~~~------ 250 (351)
T 3c0i_A 181 IQLGESG--LVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTKE--RLFEGIIKGKYK------ 250 (351)
T ss_dssp EECCTTS--CBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSHH--HHHHHHHHTCCC------
T ss_pred eEecCCC--eeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcHH--HHHHHHHcCCCC------
Confidence 8875432 123345799999999999999999999999999999999999999976311 111111110000
Q ss_pred ccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 643 VDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
. .......++..+.+++.+||+.||++||++.|+++
T Consensus 251 ------~---~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~ 286 (351)
T 3c0i_A 251 ------M---NPRQWSHISESAKDLVRRMLMLDPAERITVYEALN 286 (351)
T ss_dssp ------C---CHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred ------C---CccccccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 0 00111234567889999999999999999999975
No 85
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=100.00 E-value=5.5e-41 Score=348.89 Aligned_cols=271 Identities=27% Similarity=0.387 Sum_probs=213.0
Q ss_pred CCCCccccccccCceEEEEEEE-----CCCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCCCceEEeeee--eCCeEE
Q 005278 415 NGFNECNLLGTGSFGSVYKGTL-----FDGTNVAIKVFNLQLERASRSFDSECEILRSIRHRNLIKIISNCC--NIDFKA 487 (704)
Q Consensus 415 ~~~~~~~~ig~G~~g~V~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~--~~~~~~ 487 (704)
++|+..+.||+|+||.||+|++ .+++.||||++........+.+.+|++++++++||||+++++++. +....+
T Consensus 23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~ 102 (327)
T 3lxl_A 23 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLR 102 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEEE
T ss_pred hhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceEE
Confidence 5788899999999999999984 368899999998765666678999999999999999999999886 455689
Q ss_pred EEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCC
Q 005278 488 LVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGE 567 (704)
Q Consensus 488 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~ 567 (704)
+||||+++|+|.+++......+++..++.++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++.....
T Consensus 103 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~ 179 (327)
T 3lxl_A 103 LVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLG---SRRCVHRDLAARNILVESEAHVKIADFGLAKLLPL 179 (327)
T ss_dssp EEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCGGGCEECCT
T ss_pred EEEeecCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCChhhEEECCCCCEEEcccccceeccc
Confidence 999999999999999876667999999999999999999995 47899999999999999999999999999998754
Q ss_pred CCCc-ceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCC----cchh
Q 005278 568 GDDS-VIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDG----LTEV 642 (704)
Q Consensus 568 ~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~----~~~~ 642 (704)
.... .......||+.|+|||++.+..++.++||||||+++|||++|+.||...... +........ ....
T Consensus 180 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~------~~~~~~~~~~~~~~~~~ 253 (327)
T 3lxl_A 180 DKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAE------FLRMMGCERDVPALSRL 253 (327)
T ss_dssp TCSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHH------HHHHCC----CCHHHHH
T ss_pred CCccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccch------hhhhcccccccccHHHH
Confidence 3322 1223346888999999999888999999999999999999999998653211 000000000 0000
Q ss_pred ccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHHh
Q 005278 643 VDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEKF 696 (704)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~~ 696 (704)
.. ..........+..++..+.+++..||+.||++||++.|+++.|+++....
T Consensus 254 ~~--~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~ 305 (327)
T 3lxl_A 254 LE--LLEEGQRLPAPPACPAEVHELMKLCWAPSPQDRPSFSALGPQLDMLWSGS 305 (327)
T ss_dssp HH--HHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC----
T ss_pred HH--HhhcccCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhhh
Confidence 00 00001111223355678899999999999999999999999999886543
No 86
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=100.00 E-value=5.5e-41 Score=350.70 Aligned_cols=244 Identities=23% Similarity=0.271 Sum_probs=195.6
Q ss_pred HhCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccc---hhhhHHHHHHHHHHHhc-CCCCCceEEeeeeeCCeEE
Q 005278 413 ATNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL---ERASRSFDSECEILRSI-RHRNLIKIISNCCNIDFKA 487 (704)
Q Consensus 413 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~ 487 (704)
..++|+..+.||+|+||.||+|+.. +++.||||+++... ....+.+.+|.++++.+ +||||+++++++.+.+..+
T Consensus 21 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~ 100 (353)
T 3txo_A 21 GIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLF 100 (353)
T ss_dssp --CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE
T ss_pred chhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEE
Confidence 3578999999999999999999865 68999999997643 23445688899999998 7999999999999999999
Q ss_pred EEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCC
Q 005278 488 LVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGE 567 (704)
Q Consensus 488 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~ 567 (704)
+||||+++|+|.+++...+ .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+|+....
T Consensus 101 lv~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NILl~~~g~ikL~DFG~a~~~~~ 176 (353)
T 3txo_A 101 FVMEFVNGGDLMFHIQKSR-RFDEARARFYAAEIISALMFLH---DKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIC 176 (353)
T ss_dssp EEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCC
T ss_pred EEEeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCCcccCCCHHHEEECCCCCEEEccccceeeccc
Confidence 9999999999999998654 3899999999999999999995 46899999999999999999999999999985432
Q ss_pred CCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccc
Q 005278 568 GDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANL 647 (704)
Q Consensus 568 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (704)
.. .......||+.|+|||++.+..++.++||||+||++|||++|+.||.+....+ .+..... . .
T Consensus 177 ~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~-~~~~i~~----~--------~- 240 (353)
T 3txo_A 177 NG--VTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENEDD-LFEAILN----D--------E- 240 (353)
T ss_dssp -----------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHH----C--------C-
T ss_pred CC--ccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCCHHH-HHHHHHc----C--------C-
Confidence 21 22344579999999999998889999999999999999999999997632111 1111111 0 0
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCH
Q 005278 648 VREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSM 682 (704)
Q Consensus 648 ~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~ 682 (704)
...+...+..+.+++.+|++.||++||++
T Consensus 241 ------~~~p~~~~~~~~~li~~lL~~dP~~R~~~ 269 (353)
T 3txo_A 241 ------VVYPTWLHEDATGILKSFMTKNPTMRLGS 269 (353)
T ss_dssp ------CCCCTTSCHHHHHHHHHHTCSSGGGSTTS
T ss_pred ------CCCCCCCCHHHHHHHHHHhhhCHHHccCC
Confidence 01111234567889999999999999998
No 87
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=100.00 E-value=2.4e-40 Score=338.23 Aligned_cols=267 Identities=21% Similarity=0.242 Sum_probs=203.3
Q ss_pred CCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccc--hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEEe
Q 005278 415 NGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL--ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVLE 491 (704)
Q Consensus 415 ~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 491 (704)
++|+..+.||+|+||+||+|+.. +++.||||++.... ......+.+|+.++++++||||+++++++.+.+..++|||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 81 (292)
T 3o0g_A 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE 81 (292)
T ss_dssp CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEe
Confidence 57889999999999999999965 68999999997543 2334678899999999999999999999999999999999
Q ss_pred ccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCCCc
Q 005278 492 FMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGDDS 571 (704)
Q Consensus 492 ~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~~~ 571 (704)
|+++ ++.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++......
T Consensus 82 ~~~~-~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH---~~~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~-- 155 (292)
T 3o0g_A 82 FCDQ-DLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCH---SRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPV-- 155 (292)
T ss_dssp CCSE-EHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCSCC--
T ss_pred cCCC-CHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEeecccceecCCcc--
Confidence 9975 777777766667999999999999999999995 4689999999999999999999999999998764322
Q ss_pred ceeccccccccccCCcccCCCC-CCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCC---cchhcc---
Q 005278 572 VIQTMTIATIGYMAPEYGSEGI-ISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDG---LTEVVD--- 644 (704)
Q Consensus 572 ~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--- 644 (704)
.......||+.|+|||++.+.. ++.++||||+||++|||++|+.||.........+........... +.....
T Consensus 156 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 235 (292)
T 3o0g_A 156 RCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPD 235 (292)
T ss_dssp SCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTT
T ss_pred ccccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhhhhhccccc
Confidence 2234457899999999987765 899999999999999999998886432222222222222111110 100000
Q ss_pred c----cchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 645 A----NLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 645 ~----~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
. ..............++..+.+++.+|++.||++|||++|+++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 282 (292)
T 3o0g_A 236 YKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ 282 (292)
T ss_dssp CCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred ccccccccCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhc
Confidence 0 000000001111234567889999999999999999999954
No 88
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.8e-41 Score=350.56 Aligned_cols=259 Identities=25% Similarity=0.449 Sum_probs=202.6
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCE----EEEEEeeccc-hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEE
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTN----VAIKVFNLQL-ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKA 487 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~----vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~ 487 (704)
.++|+..+.||+|+||.||+|+.. +++. ||+|.+.... ....+.+.+|+.++++++||||+++++++.... .+
T Consensus 14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~~ 92 (327)
T 3lzb_A 14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQ 92 (327)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-EE
T ss_pred HhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-ce
Confidence 367899999999999999999854 4554 4667664332 334577999999999999999999999998765 78
Q ss_pred EEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCC
Q 005278 488 LVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGE 567 (704)
Q Consensus 488 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~ 567 (704)
+|+||+++|+|.+++......+++..++.++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++....
T Consensus 93 ~v~~~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~~~ 169 (327)
T 3lzb_A 93 LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 169 (327)
T ss_dssp EEECCCSSCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEETTEEEECCTTC------
T ss_pred EEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHh---hCCCcCCCCCHHHEEEcCCCCEEEccCcceeEccC
Confidence 999999999999999987777999999999999999999995 46899999999999999999999999999988755
Q ss_pred CCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhh-CCCCCCccccccccHHHHHHhhcCCCcchhcccc
Q 005278 568 GDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFT-RKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDAN 646 (704)
Q Consensus 568 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (704)
...........+|+.|+|||.+.+..++.++|||||||++|||++ |+.||...... .....+....
T Consensus 170 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~--~~~~~~~~~~----------- 236 (327)
T 3lzb_A 170 EEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPAS--EISSILEKGE----------- 236 (327)
T ss_dssp ----------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGG--GHHHHHHTTC-----------
T ss_pred ccccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCHH--HHHHHHHcCC-----------
Confidence 443333444567889999999999999999999999999999999 99999764322 2222222111
Q ss_pred chhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHH
Q 005278 647 LVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEK 695 (704)
Q Consensus 647 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~ 695 (704)
....+..++..+.+++..||+.||++||++.|+++.|+++.+.
T Consensus 237 ------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~ 279 (327)
T 3lzb_A 237 ------RLPQPPICTIDVYMIMRKCWMIDADSRPKFRELIIEFSKMARD 279 (327)
T ss_dssp ------CCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHTS
T ss_pred ------CCCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhC
Confidence 0111223456788999999999999999999999999998743
No 89
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=100.00 E-value=2.9e-40 Score=347.18 Aligned_cols=252 Identities=21% Similarity=0.311 Sum_probs=203.9
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccc--hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEE
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL--ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVL 490 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 490 (704)
.++|+..+.||+|+||.||+|... +|+.||+|++.... ....+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~ 107 (362)
T 2bdw_A 28 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF 107 (362)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred ccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 467999999999999999999865 68999999997543 234567899999999999999999999999999999999
Q ss_pred eccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCC---CcEEEeeeccceecCC
Q 005278 491 EFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDEN---MTAHVSDFGISKLLGE 567 (704)
Q Consensus 491 e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~---~~~kl~Dfgla~~~~~ 567 (704)
||+++|+|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++.+ +.+||+|||++.....
T Consensus 108 e~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~al~~lH---~~~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~~ 183 (362)
T 2bdw_A 108 DLVTGGELFEDIVARE-FYSEADASHCIQQILESIAYCH---SNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVND 183 (362)
T ss_dssp CCCCSCBHHHHHTTCS-CCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEESCSSTTCCEEECCCTTCBCCTT
T ss_pred ecCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCchHHEEEecCCCCCCEEEeecCcceEecC
Confidence 9999999999997654 4899999999999999999995 4689999999999999865 4599999999987653
Q ss_pred CCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccc
Q 005278 568 GDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANL 647 (704)
Q Consensus 568 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (704)
... .....||+.|+|||++.+..++.++|||||||++|||++|..||.+... ......+...... .
T Consensus 184 ~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~--~~~~~~i~~~~~~-~-------- 249 (362)
T 2bdw_A 184 SEA---WHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQ--HRLYAQIKAGAYD-Y-------- 249 (362)
T ss_dssp CCS---CCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHTCCC-C--------
T ss_pred Ccc---cccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCH--HHHHHHHHhCCCC-C--------
Confidence 322 2345799999999999998999999999999999999999999975321 1111111111000 0
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 005278 648 VREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAK 688 (704)
Q Consensus 648 ~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~ 688 (704)
.......++..+.+++.+||+.||++||++.|+++.
T Consensus 250 -----~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 285 (362)
T 2bdw_A 250 -----PSPEWDTVTPEAKSLIDSMLTVNPKKRITADQALKV 285 (362)
T ss_dssp -----CTTGGGGSCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred -----CcccccCCCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence 001112345678899999999999999999998753
No 90
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=100.00 E-value=3.7e-41 Score=368.93 Aligned_cols=255 Identities=24% Similarity=0.391 Sum_probs=211.5
Q ss_pred hCCCCccccccccCceEEEEEEECC-CCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEEec
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLFD-GTNVAIKVFNLQLERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVLEF 492 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 492 (704)
.++|...+.||+|+||.||+|++.. +..||||+++... ...+.+.+|++++++++||||+++++++...+..++||||
T Consensus 219 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv~E~ 297 (495)
T 1opk_A 219 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEF 297 (495)
T ss_dssp GGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEEC
T ss_pred HHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcc-cchHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEEEEc
Confidence 4568888999999999999999764 8899999987543 3457799999999999999999999999999999999999
Q ss_pred cCCCCHHHHHhhC-CCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCCCc
Q 005278 493 MPNGSLEKWLYSH-NYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGDDS 571 (704)
Q Consensus 493 ~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~~~ 571 (704)
+++|+|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++...... .
T Consensus 298 ~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~-~ 373 (495)
T 1opk_A 298 MTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDT-Y 373 (495)
T ss_dssp CTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECGGGCEEECCTTCEECCTTCC-E
T ss_pred cCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCChhhEEECCCCcEEEeecccceeccCCc-e
Confidence 9999999999864 455899999999999999999995 4789999999999999999999999999998764322 2
Q ss_pred ceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhh-CCCCCCccccccccHHHHHHhhcCCCcchhccccchhh
Q 005278 572 VIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFT-RKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLVRE 650 (704)
Q Consensus 572 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (704)
.......+++.|+|||++.+..++.++|||||||++|||+| |..||.+.... .....+....
T Consensus 374 ~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~--~~~~~~~~~~--------------- 436 (495)
T 1opk_A 374 TAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS--QVYELLEKDY--------------- 436 (495)
T ss_dssp ECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGG--GHHHHHHTTC---------------
T ss_pred eecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCHH--HHHHHHHcCC---------------
Confidence 22233456789999999998899999999999999999999 99999764322 1122111110
Q ss_pred hhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHh
Q 005278 651 EQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKI 692 (704)
Q Consensus 651 ~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~ 692 (704)
....+..++..+.+++..||+.||++||++.|+++.|+.+
T Consensus 437 --~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~el~~~L~~~ 476 (495)
T 1opk_A 437 --RMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETM 476 (495)
T ss_dssp --CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred --CCCCCCCCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHH
Confidence 1112234567789999999999999999999999999886
No 91
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.1e-40 Score=341.61 Aligned_cols=244 Identities=23% Similarity=0.260 Sum_probs=194.0
Q ss_pred CCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccc--hhhhHHHHHHHHHHHhc-CCCCCceEEeeeeeCCeEEEEE
Q 005278 415 NGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL--ERASRSFDSECEILRSI-RHRNLIKIISNCCNIDFKALVL 490 (704)
Q Consensus 415 ~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ 490 (704)
++|+..++||+|+||+||+|+.. +++.||||++.... .........|+..+.++ +||||+++++++.+.+..++||
T Consensus 57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv~ 136 (311)
T 3p1a_A 57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQT 136 (311)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEEE
Confidence 57899999999999999999976 79999999986532 22334455566666555 8999999999999999999999
Q ss_pred eccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCCC
Q 005278 491 EFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGDD 570 (704)
Q Consensus 491 e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~~ 570 (704)
||+ +|+|.+++...+..+++..++.++.|++.||+|||. .+|+||||||+||+++.++.+||+|||++.......
T Consensus 137 e~~-~~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~~~- 211 (311)
T 3p1a_A 137 ELC-GPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLHS---QGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAG- 211 (311)
T ss_dssp ECC-CCBHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECGGGCEEECCCTTCEECC----
T ss_pred ecc-CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH---CCEecCCCCHHHEEECCCCCEEEccceeeeecccCC-
Confidence 999 679999998777779999999999999999999964 689999999999999999999999999998764332
Q ss_pred cceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccchhh
Q 005278 571 SVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLVRE 650 (704)
Q Consensus 571 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (704)
......||++|+|||++.+ .++.++|||||||++|||++|..|+.... .|.. .... ..
T Consensus 212 --~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~~~-------~~~~--~~~~-------~~--- 269 (311)
T 3p1a_A 212 --AGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGGE-------GWQQ--LRQG-------YL--- 269 (311)
T ss_dssp -----CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSSHH-------HHHH--HTTT-------CC---
T ss_pred --CCcccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCCcc-------HHHH--Hhcc-------CC---
Confidence 2334569999999998876 78999999999999999999977654311 1110 0000 00
Q ss_pred hhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 651 EQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 651 ~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
....+..++..+.+++.+||+.||++|||++|+++
T Consensus 270 --~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~ 304 (311)
T 3p1a_A 270 --PPEFTAGLSSELRSVLVMMLEPDPKLRATAEALLA 304 (311)
T ss_dssp --CHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred --CcccccCCCHHHHHHHHHHcCCChhhCcCHHHHHh
Confidence 01112234677899999999999999999999964
No 92
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=4.3e-42 Score=353.42 Aligned_cols=268 Identities=23% Similarity=0.374 Sum_probs=191.6
Q ss_pred hCCCCccccccccCceEEEEEEECCCCEEEEEEeeccchhhhHHHHHHHHHHHh--cCCCCCceEEeeeeeCC----eEE
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLFDGTNVAIKVFNLQLERASRSFDSECEILRS--IRHRNLIKIISNCCNID----FKA 487 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~--l~h~niv~l~~~~~~~~----~~~ 487 (704)
.++|...+.||+|+||.||+|+. +++.||||++... ....+.+|.+++.. ++||||+++++++.... ..+
T Consensus 2 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~ 77 (303)
T 3gxj_A 2 ARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLW 77 (303)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-C-TTSCEEEEECC-T---THHHHHHHHHHHTSTTCCC-CBCCEEEEEEEECSSSEEEE
T ss_pred cceeeehhhccCCCCeEEEEEEE-cCcceEEEEeccc---chhhHHHHHHHHHHHhccCcceeeeeeecccCCCccceeE
Confidence 35789999999999999999986 4899999998643 34567778888887 79999999999998876 789
Q ss_pred EEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHh-----cCCCCcEecCCCCCCeeeCCCCcEEEeeeccc
Q 005278 488 LVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHH-----GHSTPMVHCDLKPNNILLDENMTAHVSDFGIS 562 (704)
Q Consensus 488 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~-----~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla 562 (704)
+||||+++|+|.+++... .+++..+..++.|++.|++|||. .|+.+|+||||||+||+++.++.+||+|||++
T Consensus 78 lv~e~~~~g~L~~~l~~~--~~~~~~~~~~~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nil~~~~~~~kl~DFg~a 155 (303)
T 3gxj_A 78 LVSDYHEHGSLFDYLNRY--TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA 155 (303)
T ss_dssp EEEECCTTCCHHHHHHHC--CBCC-CHHHHC-CHHHHHC-CCCCBCSTTCBC-CCCSCCCGGGC-CCTTCCC-BCCCCC-
T ss_pred EEEeccCCCCHHHHHhcc--CcchHHHHHHHHHHHHHHHHHHHHHhhhccCCCEeeCcCCHHHeEECCCCCEEEeecCcc
Confidence 999999999999999765 37788899999999999999952 12889999999999999999999999999999
Q ss_pred eecCCCCCcc--eeccccccccccCCcccCCC------CCCcccceeeHHHHHHHHhhC----------CCCCCcccccc
Q 005278 563 KLLGEGDDSV--IQTMTIATIGYMAPEYGSEG------IISPKSDVYSYGILLMETFTR----------KKPTNEIFIGE 624 (704)
Q Consensus 563 ~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~s~Gv~l~el~tg----------~~p~~~~~~~~ 624 (704)
.......... ......||+.|+|||++.+. .++.++|||||||++|||+|| ..||.......
T Consensus 156 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~p~~~~~~~~ 235 (303)
T 3gxj_A 156 VRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSD 235 (303)
T ss_dssp CCEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHC-CCCC-CTGGGBCBTTBC-CCCCTTTTTCC-C
T ss_pred eeccCCCcccccccCCCCcCccccCHhhhcCcccccccccCcchhHHHHHHHHHHHHhcCCCccccceeeccccccCCCC
Confidence 8765433221 12334699999999998766 445689999999999999999 55654432222
Q ss_pred ccHHHHHHhhcCCCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHH
Q 005278 625 MSLKHWVKESLPDGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEK 695 (704)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~ 695 (704)
.....+... ..........+.......++..+.+++..||+.||++|||+.||++.|+++.++
T Consensus 236 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~l~~~ 298 (303)
T 3gxj_A 236 PSVEEMRKV--------VCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ 298 (303)
T ss_dssp CCCC-CHHH--------HTTSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHC-CCC
T ss_pred ccHHHHHHH--------HHHhhcCCCccccccchhhHHHHHHHHHHHhccCcccCCCHHHHHHHHHHhhhh
Confidence 111111111 111111111111112236677899999999999999999999999999987643
No 93
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=100.00 E-value=9.8e-42 Score=353.94 Aligned_cols=271 Identities=23% Similarity=0.374 Sum_probs=216.7
Q ss_pred HHHHHHhCCCCccccccccCceEEEEEEEC------CCCEEEEEEeeccc-hhhhHHHHHHHHHHHhcCCCCCceEEeee
Q 005278 408 LDIQRATNGFNECNLLGTGSFGSVYKGTLF------DGTNVAIKVFNLQL-ERASRSFDSECEILRSIRHRNLIKIISNC 480 (704)
Q Consensus 408 ~~~~~~~~~~~~~~~ig~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~ 480 (704)
.+.....++|...+.||+|+||.||+|+.. +++.||||++.... ......+.+|++++++++||||+++++++
T Consensus 18 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~ 97 (322)
T 1p4o_A 18 DEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVV 97 (322)
T ss_dssp CTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEE
T ss_pred hhhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEEE
Confidence 344456678999999999999999999754 37889999987543 23445789999999999999999999999
Q ss_pred eeCCeEEEEEeccCCCCHHHHHhhCC---------CccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCC
Q 005278 481 CNIDFKALVLEFMPNGSLEKWLYSHN---------YFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDEN 551 (704)
Q Consensus 481 ~~~~~~~lv~e~~~~gsL~~~l~~~~---------~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~ 551 (704)
.+.+..++||||+++|+|.+++.... ..+++..++.++.|++.||+|||. .+|+||||||+||+++.+
T Consensus 98 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dikp~NIli~~~ 174 (322)
T 1p4o_A 98 SQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNA---NKFVHRDLAARNCMVAED 174 (322)
T ss_dssp CSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHH---TTCBCSCCSGGGEEECTT
T ss_pred ccCCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHH---CCCccCCCccceEEEcCC
Confidence 99999999999999999999997532 346899999999999999999954 689999999999999999
Q ss_pred CcEEEeeeccceecCCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhh-CCCCCCccccccccHHHH
Q 005278 552 MTAHVSDFGISKLLGEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFT-RKKPTNEIFIGEMSLKHW 630 (704)
Q Consensus 552 ~~~kl~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-g~~p~~~~~~~~~~~~~~ 630 (704)
+.+||+|||+++...............+|+.|+|||++.+..++.++||||||+++|||++ |..||..... ...
T Consensus 175 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~-----~~~ 249 (322)
T 1p4o_A 175 FTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSN-----EQV 249 (322)
T ss_dssp CCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCH-----HHH
T ss_pred CeEEECcCccccccccccccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCCH-----HHH
Confidence 9999999999987644332222334467899999999998899999999999999999999 8899876322 111
Q ss_pred HHhhcCCCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHHhhhhh
Q 005278 631 VKESLPDGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEKFLDDV 700 (704)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~~~~ 700 (704)
......... ...+..++..+.+++..||+.||++||++.|+++.|++..+...+++
T Consensus 250 ~~~~~~~~~--------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~~~~~~~~~ 305 (322)
T 1p4o_A 250 LRFVMEGGL--------------LDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPGFREV 305 (322)
T ss_dssp HHHHHTTCC--------------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSCTTHHHH
T ss_pred HHHHHcCCc--------------CCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHhhccCCccc
Confidence 111111000 01112345678899999999999999999999999998766555443
No 94
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.3e-40 Score=346.54 Aligned_cols=261 Identities=26% Similarity=0.454 Sum_probs=204.7
Q ss_pred CCCCccccccccCceEEEEEEECC-----CCEEEEEEeeccc-hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEE
Q 005278 415 NGFNECNLLGTGSFGSVYKGTLFD-----GTNVAIKVFNLQL-ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKAL 488 (704)
Q Consensus 415 ~~~~~~~~ig~G~~g~V~~~~~~~-----~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 488 (704)
++|...+.||+|+||.||+|+... +..||||++.... ......+.+|++++++++||||+++++++...+..++
T Consensus 44 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l 123 (333)
T 1mqb_A 44 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMI 123 (333)
T ss_dssp TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcEE
Confidence 467778999999999999998542 2359999987543 3345678999999999999999999999999999999
Q ss_pred EEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCC
Q 005278 489 VLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEG 568 (704)
Q Consensus 489 v~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~ 568 (704)
||||+++|+|.+++......+++..+..++.|++.||+|||. .+|+||||||+||+++.++.+||+|||+++.....
T Consensus 124 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~ 200 (333)
T 1mqb_A 124 ITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLAN---MNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDD 200 (333)
T ss_dssp EEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECCCCC-------
T ss_pred EEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCChheEEECCCCcEEECCCCcchhhccc
Confidence 999999999999998776779999999999999999999954 68999999999999999999999999999876543
Q ss_pred CCc-ceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhh-CCCCCCccccccccHHHHHHhhcCCCcchhcccc
Q 005278 569 DDS-VIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFT-RKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDAN 646 (704)
Q Consensus 569 ~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (704)
... .......+|+.|+|||++.+..++.++||||||+++|||++ |+.||...... .....+....
T Consensus 201 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~--~~~~~~~~~~----------- 267 (333)
T 1mqb_A 201 PEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNH--EVMKAINDGF----------- 267 (333)
T ss_dssp ----------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH--HHHHHHHTTC-----------
T ss_pred cccccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCHH--HHHHHHHCCC-----------
Confidence 221 12223356889999999998899999999999999999999 99999653221 1111111000
Q ss_pred chhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHHhh
Q 005278 647 LVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEKFL 697 (704)
Q Consensus 647 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~ 697 (704)
..+.+..++..+.+++.+||+.||++||++.|+++.|+++.+...
T Consensus 268 ------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~~~ 312 (333)
T 1mqb_A 268 ------RLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRAPD 312 (333)
T ss_dssp ------CCCCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHSGG
T ss_pred ------cCCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhcch
Confidence 011122345678899999999999999999999999999876543
No 95
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.2e-40 Score=339.59 Aligned_cols=262 Identities=24% Similarity=0.410 Sum_probs=212.5
Q ss_pred CCCCccc-cccccCceEEEEEEEC---CCCEEEEEEeeccc-hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEE
Q 005278 415 NGFNECN-LLGTGSFGSVYKGTLF---DGTNVAIKVFNLQL-ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALV 489 (704)
Q Consensus 415 ~~~~~~~-~ig~G~~g~V~~~~~~---~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 489 (704)
++|.+.+ .||+|+||.||+|... ++..||||++.... ....+.+.+|++++++++||||+++++++ ..+..++|
T Consensus 9 ~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~lv 87 (287)
T 1u59_A 9 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVC-QAEALMLV 87 (287)
T ss_dssp GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-ESSSEEEE
T ss_pred HHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEe-cCCCcEEE
Confidence 4556665 8999999999999853 57889999997643 34556799999999999999999999999 45668999
Q ss_pred EeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCC
Q 005278 490 LEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGD 569 (704)
Q Consensus 490 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~ 569 (704)
|||+++|+|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++.......
T Consensus 88 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~ 164 (287)
T 1u59_A 88 MEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLE---EKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADD 164 (287)
T ss_dssp EECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEEETTEEEECCCTTCEECTTCS
T ss_pred EEeCCCCCHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHH---HCCEeeCCCchheEEEcCCCCEEECcccceeeeccCc
Confidence 9999999999999877677999999999999999999995 4689999999999999999999999999998875433
Q ss_pred Cc-ceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhh-CCCCCCccccccccHHHHHHhhcCCCcchhccccc
Q 005278 570 DS-VIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFT-RKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANL 647 (704)
Q Consensus 570 ~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (704)
.. .......+|+.|+|||++.+..++.++||||||+++|||+| |+.||...... .....+.....
T Consensus 165 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~--~~~~~i~~~~~----------- 231 (287)
T 1u59_A 165 SYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGP--EVMAFIEQGKR----------- 231 (287)
T ss_dssp CEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTH--HHHHHHHTTCC-----------
T ss_pred ceeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHH--HHHHHHhcCCc-----------
Confidence 21 12233457899999999988889999999999999999999 99999763221 11222111100
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHHhhhh
Q 005278 648 VREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEKFLDD 699 (704)
Q Consensus 648 ~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~~~ 699 (704)
...+..++..+.+++..||+.||++||++.|+++.|+++..+....
T Consensus 232 ------~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~~~ 277 (287)
T 1u59_A 232 ------MECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLASK 277 (287)
T ss_dssp ------CCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHHHTT
T ss_pred ------CCCCCCcCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcCCc
Confidence 1112244667889999999999999999999999999997765543
No 96
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=100.00 E-value=6.9e-41 Score=338.43 Aligned_cols=252 Identities=23% Similarity=0.368 Sum_probs=204.7
Q ss_pred hCCCCccccccccCceEEEEEEECCCCEEEEEEeeccc--hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeC--CeEEEE
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLFDGTNVAIKVFNLQL--ERASRSFDSECEILRSIRHRNLIKIISNCCNI--DFKALV 489 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~--~~~~lv 489 (704)
.++|...+.||+|+||.||+|+.. ++.||||++.... ....+.+.+|+.++++++||||+++++++.+. ...++|
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv 87 (271)
T 3kmu_A 9 FKQLNFLTKLNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLI 87 (271)
T ss_dssp GGGCEEEEEEEEETTEEEEEEEET-TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEE
T ss_pred HHHhHHHHHhcCCCcceEEEEEEC-CeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEee
Confidence 357888999999999999999975 8899999987543 33456799999999999999999999999887 778999
Q ss_pred EeccCCCCHHHHHhhCCC-ccCHHHHHHHHHHHHHHHHHHHhcCCCC--cEecCCCCCCeeeCCCCcEEEeeeccceecC
Q 005278 490 LEFMPNGSLEKWLYSHNY-FLGILERLNIMIDVGLALEYLHHGHSTP--MVHCDLKPNNILLDENMTAHVSDFGISKLLG 566 (704)
Q Consensus 490 ~e~~~~gsL~~~l~~~~~-~~~~~~~~~i~~~i~~~l~~Lh~~h~~~--ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~ 566 (704)
|||+++|+|.+++..... .+++..++.++.|++.|++|| |+.+ |+||||||+||+++.++.++++|||++....
T Consensus 88 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~l---H~~~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~~ 164 (271)
T 3kmu_A 88 THWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFL---HTLEPLIPRHALNSRSVMIDEDMTARISMADVKFSFQ 164 (271)
T ss_dssp EECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHH---TTSSSCCTTCCCSGGGEEECTTSCEEEEGGGSCCTTS
T ss_pred ecccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHH---hcCCCceecCCCccceEEEcCCcceeEEeccceeeec
Confidence 999999999999986543 589999999999999999999 5556 9999999999999999999999999876432
Q ss_pred CCCCcceeccccccccccCCcccCCCCCCc---ccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhc
Q 005278 567 EGDDSVIQTMTIATIGYMAPEYGSEGIISP---KSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVV 643 (704)
Q Consensus 567 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~---~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (704)
. ....||+.|+|||.+.+..++. ++||||||+++|||++|+.||......... .........
T Consensus 165 ~-------~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~-~~~~~~~~~------- 229 (271)
T 3kmu_A 165 S-------PGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNMEIG-MKVALEGLR------- 229 (271)
T ss_dssp C-------TTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCHHHHH-HHHHHSCCC-------
T ss_pred c-------cCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccChHHHH-HHHHhcCCC-------
Confidence 2 2346899999999987765444 799999999999999999999763221110 011010000
Q ss_pred cccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHH
Q 005278 644 DANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKE 694 (704)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~ 694 (704)
...+..++..+.+++..||+.||++|||++|+++.|+++++
T Consensus 230 ----------~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~L~~l~~ 270 (271)
T 3kmu_A 230 ----------PTIPPGISPHVSKLMKICMNEDPAKRPKFDMIVPILEKMQD 270 (271)
T ss_dssp ----------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHCC
T ss_pred ----------CCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhc
Confidence 01112345678899999999999999999999999999864
No 97
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=4e-41 Score=354.84 Aligned_cols=262 Identities=24% Similarity=0.402 Sum_probs=200.5
Q ss_pred CCCccccccccCceEEEEEEEC--CC--CEEEEEEeeccc-hhhhHHHHHHHHHHHhcCCCCCceEEeeeee-CCeEEEE
Q 005278 416 GFNECNLLGTGSFGSVYKGTLF--DG--TNVAIKVFNLQL-ERASRSFDSECEILRSIRHRNLIKIISNCCN-IDFKALV 489 (704)
Q Consensus 416 ~~~~~~~ig~G~~g~V~~~~~~--~~--~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~-~~~~~lv 489 (704)
.|...+.||+|+||.||+|+.. ++ ..||||.+.... ....+.+.+|+.++++++||||+++++++.. .+..++|
T Consensus 90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~lv 169 (373)
T 3c1x_A 90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVV 169 (373)
T ss_dssp EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEEE
T ss_pred eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEEE
Confidence 4566789999999999999853 22 468999986533 3445779999999999999999999998754 5578999
Q ss_pred EeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCC
Q 005278 490 LEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGD 569 (704)
Q Consensus 490 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~ 569 (704)
|||+++|+|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.+....
T Consensus 170 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~~ 246 (373)
T 3c1x_A 170 LPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKE 246 (373)
T ss_dssp EECCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCC----------
T ss_pred EECCCCCCHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHH---HCCEecCccchheEEECCCCCEEEeeccccccccccc
Confidence 9999999999999877777899999999999999999995 4689999999999999999999999999998764332
Q ss_pred Cc--ceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhh-CCCCCCccccccccHHHHHHhhcCCCcchhcccc
Q 005278 570 DS--VIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFT-RKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDAN 646 (704)
Q Consensus 570 ~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (704)
.. .......+|+.|+|||++.+..++.++|||||||++|||+| |..||...... ..........
T Consensus 247 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~--~~~~~~~~~~----------- 313 (373)
T 3c1x_A 247 FDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTF--DITVYLLQGR----------- 313 (373)
T ss_dssp -----------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSS--CHHHHHHTTC-----------
T ss_pred cccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHH--HHHHHHHcCC-----------
Confidence 21 12233467889999999999999999999999999999999 67777653222 2222221110
Q ss_pred chhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHHhhhh
Q 005278 647 LVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEKFLDD 699 (704)
Q Consensus 647 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~~~ 699 (704)
....+..++..+.+++.+||+.||++||++.|+++.|+++...+..+
T Consensus 314 ------~~~~p~~~~~~l~~li~~cl~~dp~~RPs~~ell~~L~~i~~~~~~~ 360 (373)
T 3c1x_A 314 ------RLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIGE 360 (373)
T ss_dssp ------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTCCSC
T ss_pred ------CCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcccc
Confidence 01112234567889999999999999999999999999998877654
No 98
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=100.00 E-value=3.2e-40 Score=347.54 Aligned_cols=249 Identities=25% Similarity=0.305 Sum_probs=201.6
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccc---hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEE
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL---ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALV 489 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 489 (704)
.++|+..+.||+|+||.||+|+.. +++.||+|++.... ....+.+.+|+++++.++||||+++++++.+.+..++|
T Consensus 14 ~~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv 93 (384)
T 4fr4_A 14 FDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMV 93 (384)
T ss_dssp GGGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred hHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence 357889999999999999999865 68899999987543 22346788999999999999999999999999999999
Q ss_pred EeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCC
Q 005278 490 LEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGD 569 (704)
Q Consensus 490 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~ 569 (704)
|||+++|+|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++..+....
T Consensus 94 ~e~~~gg~L~~~l~~~~-~l~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~ 169 (384)
T 4fr4_A 94 VDLLLGGDLRYHLQQNV-HFKEETVKLFICELVMALDYLQ---NQRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRET 169 (384)
T ss_dssp ECCCTTEEHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTC
T ss_pred EecCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCceeccCcHHHeEECCCCCEEEeccceeeeccCCC
Confidence 99999999999998653 4899999999999999999995 5789999999999999999999999999998765432
Q ss_pred CcceeccccccccccCCcccCC---CCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhcccc
Q 005278 570 DSVIQTMTIATIGYMAPEYGSE---GIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDAN 646 (704)
Q Consensus 570 ~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (704)
......||+.|+|||++.+ ..++.++|||||||++|||++|+.||...... ...........
T Consensus 170 ---~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~--~~~~~~~~~~~---------- 234 (384)
T 4fr4_A 170 ---QITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSST--SSKEIVHTFET---------- 234 (384)
T ss_dssp ---CBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTS--CHHHHHHHHHH----------
T ss_pred ---ceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCc--cHHHHHHHHhh----------
Confidence 2344579999999999864 45899999999999999999999999753221 11111111000
Q ss_pred chhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCC-HHHHH
Q 005278 647 LVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVS-MKDAA 686 (704)
Q Consensus 647 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt-~~ev~ 686 (704)
.....+..++..+.+++.+||+.||++||+ +.++.
T Consensus 235 -----~~~~~p~~~s~~~~~li~~lL~~dP~~R~s~~~~l~ 270 (384)
T 4fr4_A 235 -----TVVTYPSAWSQEMVSLLKKLLEPNPDQRFSQLSDVQ 270 (384)
T ss_dssp -----CCCCCCTTSCHHHHHHHHHHSCSSGGGSCCSHHHHH
T ss_pred -----cccCCCCcCCHHHHHHHHHHhcCCHhHhcccHHHHH
Confidence 001112234567889999999999999998 66654
No 99
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=100.00 E-value=2e-40 Score=349.77 Aligned_cols=246 Identities=21% Similarity=0.292 Sum_probs=198.5
Q ss_pred cccccccCceEEEEEEE-CCCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEEeccCCCCH
Q 005278 420 CNLLGTGSFGSVYKGTL-FDGTNVAIKVFNLQLERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVLEFMPNGSL 498 (704)
Q Consensus 420 ~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gsL 498 (704)
.+.||+|+||.||+|+. .+|+.||+|++........+.+.+|++++++++||||+++++++.+.+..++||||+++|+|
T Consensus 94 ~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~~L 173 (373)
T 2x4f_A 94 TEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGGEL 173 (373)
T ss_dssp EEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTCEE
T ss_pred ceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCCcH
Confidence 56899999999999986 46999999999876555667899999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeee--CCCCcEEEeeeccceecCCCCCcceecc
Q 005278 499 EKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILL--DENMTAHVSDFGISKLLGEGDDSVIQTM 576 (704)
Q Consensus 499 ~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~--~~~~~~kl~Dfgla~~~~~~~~~~~~~~ 576 (704)
.+++......+++..+..++.|++.||+||| +.+|+||||||+||++ +.++.+||+|||+++.+..... ...
T Consensus 174 ~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~~---~~~ 247 (373)
T 2x4f_A 174 FDRIIDESYNLTELDTILFMKQICEGIRHMH---QMYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREK---LKV 247 (373)
T ss_dssp HHHHHHTGGGCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTCB---CCC
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCCHHHEEEecCCCCcEEEEeCCCceecCCccc---ccc
Confidence 9999877667999999999999999999995 4789999999999999 6778999999999998754322 233
Q ss_pred ccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccchhhhhhhhh
Q 005278 577 TIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLVREEQAFSV 656 (704)
Q Consensus 577 ~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (704)
..||+.|+|||++.+..++.++|||||||++|||++|+.||.+.... ..+..+...... . . ...
T Consensus 248 ~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~-~~~~~i~~~~~~--~--------~-----~~~ 311 (373)
T 2x4f_A 248 NFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDA-ETLNNILACRWD--L--------E-----DEE 311 (373)
T ss_dssp CCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSHH-HHHHHHHHTCCC--S--------C-----SGG
T ss_pred ccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHhccCC--C--------C-----hhh
Confidence 46999999999999999999999999999999999999999763211 111111111000 0 0 001
Q ss_pred hHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 657 KIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 657 ~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
...++..+.+++.+||+.||++||++.|+++
T Consensus 312 ~~~~~~~~~~li~~~L~~dp~~Rps~~e~l~ 342 (373)
T 2x4f_A 312 FQDISEEAKEFISKLLIKEKSWRISASEALK 342 (373)
T ss_dssp GTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred hccCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 1234567889999999999999999999987
No 100
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=100.00 E-value=3.5e-40 Score=348.46 Aligned_cols=249 Identities=18% Similarity=0.258 Sum_probs=198.7
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccc---hhhhHHHHHHHHHHHhc-CCCCCceEEeeeeeCCeEEE
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL---ERASRSFDSECEILRSI-RHRNLIKIISNCCNIDFKAL 488 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~l 488 (704)
.++|+..+.||+|+||.||+|+.. +++.||+|+++... ....+.+..|..+++++ +||||+++++++.+.+..++
T Consensus 51 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l 130 (396)
T 4dc2_A 51 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF 130 (396)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred hhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEE
Confidence 468999999999999999999965 58899999997653 22345688899999887 89999999999999999999
Q ss_pred EEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCC
Q 005278 489 VLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEG 568 (704)
Q Consensus 489 v~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~ 568 (704)
||||+++|+|.+++...+ .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+|+.....
T Consensus 131 V~E~~~gg~L~~~l~~~~-~l~~~~~~~~~~qi~~aL~~LH---~~givHrDLKp~NILl~~~g~ikL~DFGla~~~~~~ 206 (396)
T 4dc2_A 131 VIEYVNGGDLMFHMQRQR-KLPEEHARFYSAEISLALNYLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRP 206 (396)
T ss_dssp EEECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCT
T ss_pred EEEcCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCEEeccCCHHHEEECCCCCEEEeecceeeecccC
Confidence 999999999999998654 4899999999999999999995 478999999999999999999999999999863322
Q ss_pred CCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccc---cHHHHHHhhcCCCcchhccc
Q 005278 569 DDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEM---SLKHWVKESLPDGLTEVVDA 645 (704)
Q Consensus 569 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 645 (704)
. .......||+.|+|||++.+..++.++|||||||++|||++|+.||......+. ....+.... +..
T Consensus 207 ~--~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~~~-------i~~- 276 (396)
T 4dc2_A 207 G--DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQV-------ILE- 276 (396)
T ss_dssp T--CCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHHHHH-------HHH-
T ss_pred C--CccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHHHHH-------Hhc-
Confidence 2 223456799999999999999999999999999999999999999965321110 000111000 000
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCH
Q 005278 646 NLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSM 682 (704)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~ 682 (704)
.....+..++.++.+++.+||+.||++||++
T Consensus 277 ------~~~~~p~~~s~~~~~li~~lL~~dP~~R~~~ 307 (396)
T 4dc2_A 277 ------KQIRIPRSLSVKAASVLKSFLNKDPKERLGC 307 (396)
T ss_dssp ------CCCCCCTTSCHHHHHHHHHHTCSCTTTSTTC
T ss_pred ------cccCCCCcCCHHHHHHHHHHhcCCHhHcCCC
Confidence 0011122345678899999999999999996
No 101
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=100.00 E-value=2.6e-40 Score=340.92 Aligned_cols=245 Identities=26% Similarity=0.316 Sum_probs=202.4
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccc---hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEE
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL---ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALV 489 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 489 (704)
.++|+..+.||+|+||.||+|+.. +|+.||+|++.... ....+.+.+|+.+++.++||||+++++++.+....++|
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv 84 (318)
T 1fot_A 5 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMI 84 (318)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEE
T ss_pred hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEE
Confidence 357889999999999999999865 69999999997543 22346788999999999999999999999999999999
Q ss_pred EeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCC
Q 005278 490 LEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGD 569 (704)
Q Consensus 490 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~ 569 (704)
|||+++|+|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 85 ~e~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~~- 159 (318)
T 1fot_A 85 MDYIEGGELFSLLRKSQ-RFPNPVAKFYAAEVCLALEYLH---SKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDV- 159 (318)
T ss_dssp ECCCCSCBHHHHHHHTS-SCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECTTSCEEECCCSSCEECSSC-
T ss_pred EeCCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChheEEEcCCCCEEEeecCcceecCCc-
Confidence 99999999999998654 4889999999999999999994 578999999999999999999999999999876432
Q ss_pred CcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccchh
Q 005278 570 DSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLVR 649 (704)
Q Consensus 570 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (704)
.....||+.|+|||++.+..++.++||||+||++|||++|+.||.+... ........ ....
T Consensus 160 ----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~-----~~~~~~i~--------~~~~-- 220 (318)
T 1fot_A 160 ----TYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNT-----MKTYEKIL--------NAEL-- 220 (318)
T ss_dssp ----BCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSH-----HHHHHHHH--------HCCC--
T ss_pred ----cccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCH-----HHHHHHHH--------hCCC--
Confidence 2345799999999999999999999999999999999999999975321 11111100 0000
Q ss_pred hhhhhhhhHHHHHHHHHHHhhhcCCCCCCCC-----CHHHHHH
Q 005278 650 EEQAFSVKIDCLLSIMHLALDCCMESPEQRV-----SMKDAAA 687 (704)
Q Consensus 650 ~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rp-----t~~ev~~ 687 (704)
..+..++.++.+++.+|++.||++|| ++.|+++
T Consensus 221 -----~~p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~~i~~ 258 (318)
T 1fot_A 221 -----RFPPFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKN 258 (318)
T ss_dssp -----CCCTTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHT
T ss_pred -----CCCCCCCHHHHHHHHHHhccCHHHcCCCcCCCHHHHhc
Confidence 01112345688999999999999999 7888853
No 102
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=100.00 E-value=1.4e-40 Score=341.28 Aligned_cols=263 Identities=24% Similarity=0.398 Sum_probs=207.4
Q ss_pred hCCCCccccccccCceEEEEEEECC----CCEEEEEEeeccc-hhhhHHHHHHHHHHHhcCCCCCceEEeeee-eCCeEE
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLFD----GTNVAIKVFNLQL-ERASRSFDSECEILRSIRHRNLIKIISNCC-NIDFKA 487 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~~----~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~-~~~~~~ 487 (704)
..+|...+.||+|+||.||+|+..+ +..||+|.+.... ....+.+.+|+.++++++||||+++++++. ..+..+
T Consensus 24 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 103 (298)
T 3f66_A 24 SLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPL 103 (298)
T ss_dssp GEEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCE
T ss_pred ceehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceE
Confidence 3568888999999999999998542 2358999886543 334567899999999999999999999864 456789
Q ss_pred EEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCC
Q 005278 488 LVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGE 567 (704)
Q Consensus 488 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~ 567 (704)
+||||+++|+|.+++......+++..+..++.|++.|++||| +.+|+||||||+||+++.++.+||+|||+++....
T Consensus 104 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~ql~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~~~ 180 (298)
T 3f66_A 104 VVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYD 180 (298)
T ss_dssp EEEECCTTCBHHHHHHCTTCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTCCEEECSCGGGCCCSC
T ss_pred EEEeCCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCchheEEECCCCCEEECcccccccccc
Confidence 999999999999999877777899999999999999999995 46899999999999999999999999999987644
Q ss_pred CCC--cceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhh-CCCCCCccccccccHHHHHHhhcCCCcchhcc
Q 005278 568 GDD--SVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFT-RKKPTNEIFIGEMSLKHWVKESLPDGLTEVVD 644 (704)
Q Consensus 568 ~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (704)
... ........+|+.|+|||.+.+..++.++||||+|+++|||++ |..||..... ............
T Consensus 181 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~--~~~~~~~~~~~~-------- 250 (298)
T 3f66_A 181 KEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNT--FDITVYLLQGRR-------- 250 (298)
T ss_dssp GGGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCT--TTHHHHHHTTCC--------
T ss_pred cchhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCH--HHHHHHHhcCCC--------
Confidence 321 112334467889999999998899999999999999999999 5555554222 111111111100
Q ss_pred ccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHHhhh
Q 005278 645 ANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEKFLD 698 (704)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~~ 698 (704)
...+..++..+.+++.+||+.||++||++.|+++.|+++.+.+..
T Consensus 251 ---------~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~~~~ 295 (298)
T 3f66_A 251 ---------LLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIG 295 (298)
T ss_dssp ---------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTSCC
T ss_pred ---------CCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhhcc
Confidence 011123345788999999999999999999999999999887654
No 103
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=100.00 E-value=6.9e-41 Score=349.75 Aligned_cols=273 Identities=25% Similarity=0.352 Sum_probs=200.1
Q ss_pred hCCCCccccccccCceEEEEEEECCCCEEEEEEeeccchhhhHHHHH--HHHHHHhcCCCCCceEEeeeee-----CCeE
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLFDGTNVAIKVFNLQLERASRSFDS--ECEILRSIRHRNLIKIISNCCN-----IDFK 486 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~--e~~~l~~l~h~niv~l~~~~~~-----~~~~ 486 (704)
.++|+..+.||+|+||.||+|+. +++.||||++.... ...+.. |+..+..++||||+++++++.. ....
T Consensus 12 ~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~---~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~ 87 (336)
T 3g2f_A 12 LDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFAN---RQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEY 87 (336)
T ss_dssp TTSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEE
T ss_pred hHHhheeeecccCCCeEEEEEEE-CCeEEEEEEeeccc---hhhHHHHHHHHHHHhccCcchhhheecccccccCCCceE
Confidence 46889999999999999999976 68999999986542 233333 4444556899999999985532 3356
Q ss_pred EEEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcC------CCCcEecCCCCCCeeeCCCCcEEEeeec
Q 005278 487 ALVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGH------STPMVHCDLKPNNILLDENMTAHVSDFG 560 (704)
Q Consensus 487 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h------~~~ivH~dlk~~Nil~~~~~~~kl~Dfg 560 (704)
++||||+++|+|.+++.... .++..+..++.|++.||+|||..+ ..+|+||||||+||+++.++.+||+|||
T Consensus 88 ~lv~e~~~~g~L~~~l~~~~--~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kL~DFG 165 (336)
T 3g2f_A 88 LLVMEYYPNGSLXKYLSLHT--SDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFG 165 (336)
T ss_dssp EEEECCCTTCBHHHHHHHCC--BCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECTTSCEEECCCT
T ss_pred EEEEecCCCCcHHHHHhhcc--cchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEEcCCCcEEEeecc
Confidence 89999999999999997665 488899999999999999997531 2399999999999999999999999999
Q ss_pred cceecCCCCC------cceeccccccccccCCcccCC-------CCCCcccceeeHHHHHHHHhhCCCCCCccccc-cc-
Q 005278 561 ISKLLGEGDD------SVIQTMTIATIGYMAPEYGSE-------GIISPKSDVYSYGILLMETFTRKKPTNEIFIG-EM- 625 (704)
Q Consensus 561 la~~~~~~~~------~~~~~~~~gt~~y~aPE~~~~-------~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~-~~- 625 (704)
+++.+..... ........||+.|+|||++.+ ..++.++|||||||++|||++|..||...... ..
T Consensus 166 ~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~ 245 (336)
T 3g2f_A 166 LSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVPEYQ 245 (336)
T ss_dssp TCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCCCCC
T ss_pred ceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccchhHHH
Confidence 9987753221 112234469999999999876 45677899999999999999997775432111 10
Q ss_pred -----------cHHHHHHhhcCCCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHH
Q 005278 626 -----------SLKHWVKESLPDGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKE 694 (704)
Q Consensus 626 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~ 694 (704)
....+......... .+.+ .........++..+.+++.+||+.||++|||++|+++.|+++.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~ll~ 318 (336)
T 3g2f_A 246 MAFQTEVGNHPTFEDMQVLVSREKQ----RPKF---PEAWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMAELMM 318 (336)
T ss_dssp CTTHHHHCSSCCHHHHHHHHTTSCC----CCCC---CTTCCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HhhhcccCCCchHHHHHhhhccccc----CCCC---CcccccccchHHHHHHHHHHHhcCChhhCcchHHHHHHHHHHHH
Confidence 01111000000000 0000 01111223466789999999999999999999999999999988
Q ss_pred Hhhhh
Q 005278 695 KFLDD 699 (704)
Q Consensus 695 ~~~~~ 699 (704)
.|.+.
T Consensus 319 ~~~~~ 323 (336)
T 3g2f_A 319 IWERN 323 (336)
T ss_dssp CCCC-
T ss_pred HHHhc
Confidence 77653
No 104
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=100.00 E-value=1.4e-40 Score=343.64 Aligned_cols=266 Identities=26% Similarity=0.440 Sum_probs=201.4
Q ss_pred HHHhCCCCccccccccCceEEEEEEEC----CCCEEEEEEeeccc--hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCC
Q 005278 411 QRATNGFNECNLLGTGSFGSVYKGTLF----DGTNVAIKVFNLQL--ERASRSFDSECEILRSIRHRNLIKIISNCCNID 484 (704)
Q Consensus 411 ~~~~~~~~~~~~ig~G~~g~V~~~~~~----~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~ 484 (704)
....++|...+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|+.++++++||||+++++++.+.+
T Consensus 30 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~ 109 (313)
T 3brb_A 30 VIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMS 109 (313)
T ss_dssp BCCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC--
T ss_pred ccCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeecc
Confidence 334568888999999999999999854 34589999987543 334567899999999999999999999997754
Q ss_pred -----eEEEEEeccCCCCHHHHHhh-----CCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcE
Q 005278 485 -----FKALVLEFMPNGSLEKWLYS-----HNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTA 554 (704)
Q Consensus 485 -----~~~lv~e~~~~gsL~~~l~~-----~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~ 554 (704)
..++||||+++|+|.+++.. ....+++..++.++.|++.||+||| +.+|+||||||+||+++.++.+
T Consensus 110 ~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dikp~NIli~~~~~~ 186 (313)
T 3brb_A 110 SQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLS---NRNFLHRDLAARNCMLRDDMTV 186 (313)
T ss_dssp -----CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHH---TTTCCCCCCSGGGEEECTTSCE
T ss_pred ccCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCcceEEEcCCCcE
Confidence 34899999999999999953 3356899999999999999999995 5789999999999999999999
Q ss_pred EEeeeccceecCCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhh-CCCCCCccccccccHHHHHHh
Q 005278 555 HVSDFGISKLLGEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFT-RKKPTNEIFIGEMSLKHWVKE 633 (704)
Q Consensus 555 kl~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~ 633 (704)
||+|||++................+++.|+|||.+.+..++.++||||||+++|||++ |..||...... ........
T Consensus 187 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~--~~~~~~~~ 264 (313)
T 3brb_A 187 CVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNH--EMYDYLLH 264 (313)
T ss_dssp EECSCSCC----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGG--GHHHHHHT
T ss_pred EEeecCcceecccccccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCHH--HHHHHHHc
Confidence 9999999987654433333344567889999999999999999999999999999999 88898763322 11111111
Q ss_pred hcCCCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHHhhh
Q 005278 634 SLPDGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEKFLD 698 (704)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~~ 698 (704)
... ...+..++..+.+++.+||+.||++||++.|+++.|+++.+...+
T Consensus 265 ~~~-----------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~l~~~lp~ 312 (313)
T 3brb_A 265 GHR-----------------LKQPEDCLDELYEIMYSCWRTDPLDRPTFSVLRLQLEKLLESLPD 312 (313)
T ss_dssp TCC-----------------CCCBTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHC--
T ss_pred CCC-----------------CCCCccccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcCC
Confidence 100 111223456788999999999999999999999999999877653
No 105
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=100.00 E-value=4.3e-40 Score=350.66 Aligned_cols=270 Identities=18% Similarity=0.244 Sum_probs=204.1
Q ss_pred hCCCCcccccccc--CceEEEEEEEC-CCCEEEEEEeeccc--hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEE
Q 005278 414 TNGFNECNLLGTG--SFGSVYKGTLF-DGTNVAIKVFNLQL--ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKAL 488 (704)
Q Consensus 414 ~~~~~~~~~ig~G--~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 488 (704)
.++|++.+.||+| +||.||+|+.. +++.||||++.... ....+.+.+|+++++.++||||+++++++.+.+..++
T Consensus 24 ~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 103 (389)
T 3gni_B 24 GGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWV 103 (389)
T ss_dssp GGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred CCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEEE
Confidence 4689999999999 99999999965 79999999997654 3345678899999999999999999999999999999
Q ss_pred EEeccCCCCHHHHHhhC-CCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCC
Q 005278 489 VLEFMPNGSLEKWLYSH-NYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGE 567 (704)
Q Consensus 489 v~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~ 567 (704)
||||+++|+|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||.+.....
T Consensus 104 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~NIll~~~~~~kl~dfg~~~~~~~ 180 (389)
T 3gni_B 104 VTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIH---HMGYVHRSVKASHILISVDGKVYLSGLRSNLSMIS 180 (389)
T ss_dssp EEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCGGGCEECEE
T ss_pred EEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEcccccceeecc
Confidence 99999999999999864 345899999999999999999995 46899999999999999999999999999876532
Q ss_pred CCC-----cceeccccccccccCCcccCC--CCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCc-
Q 005278 568 GDD-----SVIQTMTIATIGYMAPEYGSE--GIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGL- 639 (704)
Q Consensus 568 ~~~-----~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~- 639 (704)
... ........||+.|+|||++.+ ..++.++|||||||++|||++|+.||.+.......... .....+...
T Consensus 181 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~-~~~~~~~~~~ 259 (389)
T 3gni_B 181 HGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEK-LNGTVPCLLD 259 (389)
T ss_dssp TTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCSTTHHHHC-----------
T ss_pred ccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH-hcCCCCcccc
Confidence 211 111223468999999999887 67999999999999999999999999764332211111 100000000
Q ss_pred ----------------------chhccc----cchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 640 ----------------------TEVVDA----NLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 640 ----------------------~~~~~~----~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
...... ...........+..++..+.+++.+||+.||++|||+.|+++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~ell~ 333 (389)
T 3gni_B 260 TSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLLN 333 (389)
T ss_dssp ----------------------------------------------CCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred ccccccccccccccccccccccccccccCccccccCCCCCCccccccCHHHHHHHHHHhhcCcccCCCHHHHhc
Confidence 000000 000000111223345677999999999999999999999974
No 106
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.4e-40 Score=346.15 Aligned_cols=252 Identities=24% Similarity=0.328 Sum_probs=195.3
Q ss_pred hCCCCccccccccCceEEEEEEECCCCEEEEEEeeccc--hhhhHHHHHHHHHHHhcCC--CCCceEEeeeeeCCeEEEE
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLFDGTNVAIKVFNLQL--ERASRSFDSECEILRSIRH--RNLIKIISNCCNIDFKALV 489 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h--~niv~l~~~~~~~~~~~lv 489 (704)
.++|++.+.||+|+||.||+|...+++.||||++.... ....+.+.+|+.++++++| |||+++++++......++|
T Consensus 8 ~~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv 87 (343)
T 3dbq_A 8 GRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMV 87 (343)
T ss_dssp SCEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred cCEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEE
Confidence 45789999999999999999998889999999987543 3344678999999999986 9999999999999999999
Q ss_pred EeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCC
Q 005278 490 LEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGD 569 (704)
Q Consensus 490 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~ 569 (704)
|| +.+|+|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++ ++.+||+|||+++......
T Consensus 88 ~e-~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~al~~lH---~~~iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~~~ 161 (343)
T 3dbq_A 88 ME-CGNIDLNSWLKKKK-SIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDT 161 (343)
T ss_dssp EC-CCSEEHHHHHHHSC-CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEE-TTEEEECCCSSSCCC----
T ss_pred Ee-CCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCcceEEEE-CCcEEEeecccccccCccc
Confidence 99 56889999998754 4889999999999999999995 46899999999999997 6789999999998775443
Q ss_pred CcceeccccccccccCCcccCC-----------CCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCC
Q 005278 570 DSVIQTMTIATIGYMAPEYGSE-----------GIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDG 638 (704)
Q Consensus 570 ~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~ 638 (704)
.........||+.|+|||++.+ ..++.++|||||||++|||++|+.||.........+..........
T Consensus 162 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~- 240 (343)
T 3dbq_A 162 TSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEI- 240 (343)
T ss_dssp --------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHCTTSCC-
T ss_pred ccccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhhHHHHHHHHhcCCccc-
Confidence 3333445679999999998754 6789999999999999999999999976332111111111100000
Q ss_pred cchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 005278 639 LTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAK 688 (704)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~ 688 (704)
..+...+..+.+++..||+.||++|||+.|+++.
T Consensus 241 ----------------~~~~~~~~~l~~li~~~L~~dp~~Rpt~~e~l~h 274 (343)
T 3dbq_A 241 ----------------EFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAH 274 (343)
T ss_dssp ----------------CCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred ----------------CCcccCCHHHHHHHHHHcCCChhHCCCHHHHHhC
Confidence 0111123467889999999999999999999753
No 107
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=100.00 E-value=1.7e-40 Score=337.42 Aligned_cols=261 Identities=23% Similarity=0.327 Sum_probs=208.2
Q ss_pred HhCCCCccccccccCceEEEEEEECC----CCEEEEEEeeccc-hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEE
Q 005278 413 ATNGFNECNLLGTGSFGSVYKGTLFD----GTNVAIKVFNLQL-ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKA 487 (704)
Q Consensus 413 ~~~~~~~~~~ig~G~~g~V~~~~~~~----~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~ 487 (704)
..++|...+.||+|+||.||+|+..+ +..||+|.+.... ....+.+.+|+.++++++||||+++++++.+. ..+
T Consensus 10 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~-~~~ 88 (281)
T 3cc6_A 10 AREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEEE-PTW 88 (281)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECSS-SCE
T ss_pred cccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcCC-CCE
Confidence 34678889999999999999998542 3459999987653 34457799999999999999999999998754 468
Q ss_pred EEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCC
Q 005278 488 LVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGE 567 (704)
Q Consensus 488 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~ 567 (704)
+||||+++|+|.+++......+++..+..++.|++.|++||| +.+|+||||||+||+++.++.+||+|||++.....
T Consensus 89 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~ 165 (281)
T 3cc6_A 89 IIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLE---SINCVHRDIAVRNILVASPECVKLGDFGLSRYIED 165 (281)
T ss_dssp EEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEEEETTEEEECCCCGGGCC--
T ss_pred EEEecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCccceEEECCCCcEEeCccCCCccccc
Confidence 999999999999999877777899999999999999999995 47899999999999999999999999999987644
Q ss_pred CCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhh-CCCCCCccccccccHHHHHHhhcCCCcchhcccc
Q 005278 568 GDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFT-RKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDAN 646 (704)
Q Consensus 568 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (704)
... .......+|+.|+|||++.+..++.++||||||+++|||+| |+.||...... ...........
T Consensus 166 ~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~--~~~~~~~~~~~---------- 232 (281)
T 3cc6_A 166 EDY-YKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENK--DVIGVLEKGDR---------- 232 (281)
T ss_dssp --------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGG--GHHHHHHHTCC----------
T ss_pred ccc-cccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCChH--HHHHHHhcCCC----------
Confidence 321 12234457889999999988899999999999999999998 99999753222 11121111100
Q ss_pred chhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHHhh
Q 005278 647 LVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEKFL 697 (704)
Q Consensus 647 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~ 697 (704)
...+..++..+.+++.+||+.||++||++.|+++.|+++.+.-.
T Consensus 233 -------~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~~~ 276 (281)
T 3cc6_A 233 -------LPKPDLCPPVLYTLMTRCWDYDPSDRPRFTELVCSLSDVYQMEK 276 (281)
T ss_dssp -------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHH
T ss_pred -------CCCCCCCCHHHHHHHHHHccCCchhCcCHHHHHHHHHHHHHhhh
Confidence 01112345678899999999999999999999999999876543
No 108
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=100.00 E-value=2.4e-40 Score=346.40 Aligned_cols=251 Identities=22% Similarity=0.296 Sum_probs=188.8
Q ss_pred HhCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEEe
Q 005278 413 ATNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQLERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVLE 491 (704)
Q Consensus 413 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 491 (704)
..++|+..+.||+|+||.||+|+.. +++.||||++.... ..+.+.+|++++++++||||+++++++.+.+..++|||
T Consensus 51 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 128 (349)
T 2w4o_A 51 LSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV--DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLE 128 (349)
T ss_dssp GGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC------------CHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred ccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch--hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEEE
Confidence 3467999999999999999999975 58899999987542 34678899999999999999999999999999999999
Q ss_pred ccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCC---CCcEEEeeeccceecCCC
Q 005278 492 FMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDE---NMTAHVSDFGISKLLGEG 568 (704)
Q Consensus 492 ~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~---~~~~kl~Dfgla~~~~~~ 568 (704)
|+++|+|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++. ++.+||+|||+++.....
T Consensus 129 ~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~~ 204 (349)
T 2w4o_A 129 LVTGGELFDRIVEKG-YYSERDAADAVKQILEAVAYLH---ENGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQ 204 (349)
T ss_dssp CCCSCBHHHHHTTCS-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEESSSSTTCCEEECCCC--------
T ss_pred eCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCcccEEEecCCCCCCEEEccCccccccCcc
Confidence 999999999997654 4899999999999999999995 468999999999999975 889999999999876432
Q ss_pred CCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccch
Q 005278 569 DDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLV 648 (704)
Q Consensus 569 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (704)
. ......||+.|+|||++.+..++.++|||||||++|||++|+.||.........+......... ..
T Consensus 205 ~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~i~~~~~~-----~~----- 271 (349)
T 2w4o_A 205 V---LMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQFMFRRILNCEYY-----FI----- 271 (349)
T ss_dssp -----------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCHHHHHHHHHTTCCC-----CC-----
T ss_pred c---ccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhCCCc-----cC-----
Confidence 1 2234568999999999999999999999999999999999999996532221111111110000 00
Q ss_pred hhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 649 REEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 649 ~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
.+....++..+.+++.+||+.||++||++.|+++
T Consensus 272 -----~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 305 (349)
T 2w4o_A 272 -----SPWWDEVSLNAKDLVRKLIVLDPKKRLTTFQALQ 305 (349)
T ss_dssp -----TTTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred -----CchhhhCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 0011234567889999999999999999999975
No 109
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=100.00 E-value=3e-40 Score=344.36 Aligned_cols=250 Identities=23% Similarity=0.327 Sum_probs=197.3
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccc-hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCC-------
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL-ERASRSFDSECEILRSIRHRNLIKIISNCCNID------- 484 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~------- 484 (704)
.++|+..+.||+|+||.||+|+.. +|+.||||++.... ....+.+.+|++++++++||||+++++++.+..
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~ 84 (332)
T 3qd2_B 5 LTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEE 84 (332)
T ss_dssp HHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHH
T ss_pred hhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhh
Confidence 457889999999999999999975 79999999997543 335577999999999999999999999986543
Q ss_pred --------------------------------------------------eEEEEEeccCCCCHHHHHhhCC--CccCHH
Q 005278 485 --------------------------------------------------FKALVLEFMPNGSLEKWLYSHN--YFLGIL 512 (704)
Q Consensus 485 --------------------------------------------------~~~lv~e~~~~gsL~~~l~~~~--~~~~~~ 512 (704)
..++||||+++|+|.+++.... ...++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~ 164 (332)
T 3qd2_B 85 MDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHG 164 (332)
T ss_dssp HHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSCHH
T ss_pred hhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchhhH
Confidence 3789999999999999998643 335666
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCCCc----------ceecccccccc
Q 005278 513 ERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGDDS----------VIQTMTIATIG 582 (704)
Q Consensus 513 ~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~~~----------~~~~~~~gt~~ 582 (704)
.++.++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++........ .......||+.
T Consensus 165 ~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~ 241 (332)
T 3qd2_B 165 VCLHIFIQIAEAVEFLH---SKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKL 241 (332)
T ss_dssp HHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CGG
T ss_pred HHHHHHHHHHHHHHHHH---hCCeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCcC
Confidence 78999999999999995 478999999999999999999999999999987654221 12234469999
Q ss_pred ccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccchhhhhhhhhhHHHHH
Q 005278 583 YMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLVREEQAFSVKIDCLL 662 (704)
Q Consensus 583 y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (704)
|+|||++.+..++.++|||||||++|||++|..|+.... ........ . .........+.
T Consensus 242 y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~~~-------~~~~~~~~--------~------~~~~~~~~~~~ 300 (332)
T 3qd2_B 242 YMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQMERV-------RIITDVRN--------L------KFPLLFTQKYP 300 (332)
T ss_dssp GSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHHHH-------HHHHHHHT--------T------CCCHHHHHHCH
T ss_pred ccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhHHH-------HHHHHhhc--------c------CCCcccccCCh
Confidence 999999999999999999999999999999877753311 00000000 0 00112224456
Q ss_pred HHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 663 SIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 663 ~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
.+.+++.+||+.||++||++.|+++
T Consensus 301 ~~~~li~~~l~~~p~~Rps~~~~l~ 325 (332)
T 3qd2_B 301 QEHMMVQDMLSPSPTERPEATDIIE 325 (332)
T ss_dssp HHHHHHHHHHCSSGGGSCCHHHHHH
T ss_pred hHHHHHHHHccCCCCcCCCHHHHhh
Confidence 6788999999999999999999965
No 110
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=100.00 E-value=3.4e-41 Score=365.32 Aligned_cols=258 Identities=27% Similarity=0.435 Sum_probs=205.3
Q ss_pred HhCCCCccccccccCceEEEEEEECCCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEEec
Q 005278 413 ATNGFNECNLLGTGSFGSVYKGTLFDGTNVAIKVFNLQLERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVLEF 492 (704)
Q Consensus 413 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 492 (704)
..++|...+.||+|+||.||+|.+.++..||||+++... ...+.+.+|++++++++||||+++++++.+ +..++||||
T Consensus 182 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~iv~e~ 259 (452)
T 1fmk_A 182 PRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEY 259 (452)
T ss_dssp CGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECC
T ss_pred ChhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEcC-CceEEEehh
Confidence 346788889999999999999999888889999987543 235679999999999999999999999876 668999999
Q ss_pred cCCCCHHHHHhhC-CCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCCCc
Q 005278 493 MPNGSLEKWLYSH-NYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGDDS 571 (704)
Q Consensus 493 ~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~~~ 571 (704)
+++|+|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.......
T Consensus 260 ~~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~- 335 (452)
T 1fmk_A 260 MSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEY- 335 (452)
T ss_dssp CTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCCTTC--------
T ss_pred hcCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChhhEEECCCCCEEECCCccceecCCCce-
Confidence 9999999999753 345899999999999999999995 47899999999999999999999999999987654321
Q ss_pred ceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhh-CCCCCCccccccccHHHHHHhhcCCCcchhccccchhh
Q 005278 572 VIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFT-RKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLVRE 650 (704)
Q Consensus 572 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (704)
.......+++.|+|||++.+..++.++|||||||++|||+| |+.||.+....+ ....+...
T Consensus 336 ~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~--~~~~i~~~---------------- 397 (452)
T 1fmk_A 336 TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNRE--VLDQVERG---------------- 397 (452)
T ss_dssp -------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH--HHHHHHTT----------------
T ss_pred ecccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCHHH--HHHHHHcC----------------
Confidence 12233457889999999998899999999999999999999 999997632211 11111100
Q ss_pred hhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHH
Q 005278 651 EQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEK 695 (704)
Q Consensus 651 ~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~ 695 (704)
...+.+..++..+.+++.+||+.||++|||++++++.|+++...
T Consensus 398 -~~~~~~~~~~~~l~~li~~cl~~dP~~Rpt~~~l~~~L~~~~~~ 441 (452)
T 1fmk_A 398 -YRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTS 441 (452)
T ss_dssp -CCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSC
T ss_pred -CCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhcc
Confidence 01112234567789999999999999999999999999987543
No 111
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.3e-40 Score=341.32 Aligned_cols=249 Identities=24% Similarity=0.296 Sum_probs=195.0
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccch--------------------------hhhHHHHHHHHHHH
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQLE--------------------------RASRSFDSECEILR 466 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~--------------------------~~~~~~~~e~~~l~ 466 (704)
.++|...+.||+|+||.||+|+.. +++.||||++..... ...+.+.+|+++++
T Consensus 12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~ 91 (298)
T 2zv2_A 12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK 91 (298)
T ss_dssp ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence 468999999999999999999864 689999999865421 11356889999999
Q ss_pred hcCCCCCceEEeeeee--CCeEEEEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCC
Q 005278 467 SIRHRNLIKIISNCCN--IDFKALVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPN 544 (704)
Q Consensus 467 ~l~h~niv~l~~~~~~--~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~ 544 (704)
+++||||+++++++.+ .+..++||||+++|+|.+++.. ..+++..+..++.|++.||+|||. .+|+||||||+
T Consensus 92 ~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dlkp~ 166 (298)
T 2zv2_A 92 KLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTL--KPLSEDQARFYFQDLIKGIEYLHY---QKIIHRDIKPS 166 (298)
T ss_dssp TCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCS--SCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGG
T ss_pred hCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHH
Confidence 9999999999999986 5688999999999999886543 358999999999999999999954 68999999999
Q ss_pred CeeeCCCCcEEEeeeccceecCCCCCcceeccccccccccCCcccCCCC---CCcccceeeHHHHHHHHhhCCCCCCccc
Q 005278 545 NILLDENMTAHVSDFGISKLLGEGDDSVIQTMTIATIGYMAPEYGSEGI---ISPKSDVYSYGILLMETFTRKKPTNEIF 621 (704)
Q Consensus 545 Nil~~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---~~~~~Dv~s~Gv~l~el~tg~~p~~~~~ 621 (704)
||+++.++.+||+|||+++...... .......||+.|+|||++.+.. ++.++|||||||++|||++|+.||....
T Consensus 167 Nil~~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~ 244 (298)
T 2zv2_A 167 NLLVGEDGHIKIADFGVSNEFKGSD--ALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDER 244 (298)
T ss_dssp GEEECTTSCEEECCCTTCEECSSSS--CEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred HEEECCCCCEEEecCCCcccccccc--ccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCcc
Confidence 9999999999999999998765432 2233457999999999987655 4788999999999999999999997531
Q ss_pred cccccHHHHHHhhcCCCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 622 IGEMSLKHWVKESLPDGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
...+......... ..+....++..+.+++.+||+.||++||++.|+++
T Consensus 245 -----~~~~~~~~~~~~~-------------~~~~~~~~~~~l~~li~~~l~~dp~~R~s~~e~l~ 292 (298)
T 2zv2_A 245 -----IMCLHSKIKSQAL-------------EFPDQPDIAEDLKDLITRMLDKNPESRIVVPEIKL 292 (298)
T ss_dssp -----HHHHHHHHHHCCC-------------CCCSSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred -----HHHHHHHHhcccC-------------CCCCccccCHHHHHHHHHHhhcChhhCCCHHHHhc
Confidence 1111111100000 00011133567889999999999999999999954
No 112
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=100.00 E-value=1.2e-40 Score=346.70 Aligned_cols=250 Identities=24% Similarity=0.287 Sum_probs=202.2
Q ss_pred HHHhCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccc---hhhhHHHHHHHHHHHhc-CCCCCceEEeeeeeCCe
Q 005278 411 QRATNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL---ERASRSFDSECEILRSI-RHRNLIKIISNCCNIDF 485 (704)
Q Consensus 411 ~~~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~ 485 (704)
....++|...+.||+|+||.||+|+.. +|+.||||+++... ....+.+..|..+++.+ +||||+++++++.+.+.
T Consensus 13 ~~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~ 92 (345)
T 1xjd_A 13 KLKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKEN 92 (345)
T ss_dssp ---CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSE
T ss_pred CCChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCE
Confidence 445679999999999999999999975 68999999997643 23345678899999887 99999999999999999
Q ss_pred EEEEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceec
Q 005278 486 KALVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLL 565 (704)
Q Consensus 486 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~ 565 (704)
.++||||+++|+|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++..
T Consensus 93 ~~lv~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~ 168 (345)
T 1xjd_A 93 LFFVMEYLNGGDLMYHIQSCH-KFDLSRATFYAAEIILGLQFLH---SKGIVYRDLKLDNILLDKDGHIKIADFGMCKEN 168 (345)
T ss_dssp EEEEEECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCC
T ss_pred EEEEEeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCChhhEEECCCCCEEEeEChhhhhc
Confidence 999999999999999998643 4899999999999999999995 468999999999999999999999999999864
Q ss_pred CCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccc
Q 005278 566 GEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDA 645 (704)
Q Consensus 566 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (704)
..... ......||+.|+|||++.+..++.++||||+||++|||++|+.||.+.... .....+....
T Consensus 169 ~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~--~~~~~i~~~~---------- 234 (345)
T 1xjd_A 169 MLGDA--KTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEE--ELFHSIRMDN---------- 234 (345)
T ss_dssp CCTTC--CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHCC----------
T ss_pred ccCCC--cccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCCHH--HHHHHHHhCC----------
Confidence 32221 234457999999999999999999999999999999999999999763211 1111111000
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHH-HHH
Q 005278 646 NLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMK-DAA 686 (704)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~-ev~ 686 (704)
...+..++..+.+++.+||+.||++||++. |+.
T Consensus 235 --------~~~p~~~s~~~~~li~~lL~~dp~~R~~~~~~i~ 268 (345)
T 1xjd_A 235 --------PFYPRWLEKEAKDLLVKLFVREPEKRLGVRGDIR 268 (345)
T ss_dssp --------CCCCTTSCHHHHHHHHHHSCSSGGGSBTTBSCGG
T ss_pred --------CCCCcccCHHHHHHHHHHhcCCHhHcCCChHHHH
Confidence 001112356788999999999999999997 653
No 113
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=100.00 E-value=3.5e-40 Score=334.25 Aligned_cols=253 Identities=21% Similarity=0.319 Sum_probs=207.0
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccc-hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEEe
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL-ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVLE 491 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 491 (704)
.++|+..+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|+.+++.++||||+++++++.+.+..++|||
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 85 (276)
T 2yex_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE 85 (276)
T ss_dssp HHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred ecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEEE
Confidence 357889999999999999999965 78999999987543 3345678999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCCCc
Q 005278 492 FMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGDDS 571 (704)
Q Consensus 492 ~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~~~ 571 (704)
|+++|+|.+++... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||.+.........
T Consensus 86 ~~~~~~L~~~l~~~-~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~ 161 (276)
T 2yex_A 86 YCSGGELFDRIEPD-IGMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRE 161 (276)
T ss_dssp CCTTEEGGGGSBTT-TBCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEE
T ss_pred ecCCCcHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCChHHEEEccCCCEEEeeCCCccccCCCcch
Confidence 99999999998754 34899999999999999999995 478999999999999999999999999999876433222
Q ss_pred ceeccccccccccCCcccCCCCC-CcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccchhh
Q 005278 572 VIQTMTIATIGYMAPEYGSEGII-SPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLVRE 650 (704)
Q Consensus 572 ~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (704)
.......||+.|+|||++.+..+ +.++||||||+++|||++|+.||.........+..|......
T Consensus 162 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~-------------- 227 (276)
T 2yex_A 162 RLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTY-------------- 227 (276)
T ss_dssp CCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHHHHHHHTTCTT--------------
T ss_pred hcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHHHHHHhhhcccc--------------
Confidence 22344578999999999887665 779999999999999999999998754433333443221100
Q ss_pred hhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 651 EQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 651 ~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
......++..+.+++.+||+.||++||++.|+++
T Consensus 228 ---~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~ 261 (276)
T 2yex_A 228 ---LNPWKKIDSAPLALLHKILVENPSARITIPDIKK 261 (276)
T ss_dssp ---STTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred ---cCchhhcCHHHHHHHHHHCCCCchhCCCHHHHhc
Confidence 0011233556788999999999999999999964
No 114
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2e-40 Score=340.13 Aligned_cols=263 Identities=24% Similarity=0.372 Sum_probs=208.9
Q ss_pred CCCccccccccCceEEEEEEEC-CC---CEEEEEEeeccc-hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeE-EEE
Q 005278 416 GFNECNLLGTGSFGSVYKGTLF-DG---TNVAIKVFNLQL-ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFK-ALV 489 (704)
Q Consensus 416 ~~~~~~~ig~G~~g~V~~~~~~-~~---~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~-~lv 489 (704)
.|...+.||+|+||+||+|+.. ++ ..||+|++.... ....+.+.+|+.++++++||||+++++++.+.+.. ++|
T Consensus 22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v 101 (298)
T 3pls_A 22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVL 101 (298)
T ss_dssp EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEE
T ss_pred EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEE
Confidence 4556689999999999999853 23 379999987543 33456789999999999999999999999876654 899
Q ss_pred EeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCC
Q 005278 490 LEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGD 569 (704)
Q Consensus 490 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~ 569 (704)
|||+.+|+|.+++......+++..+..++.|++.|++|||. .+|+||||||+||+++.++.+||+|||+++......
T Consensus 102 ~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~---~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~ 178 (298)
T 3pls_A 102 LPYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARGMEYLAE---QKFVHRDLAARNCMLDESFTVKVADFGLARDILDRE 178 (298)
T ss_dssp ECCCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTCCEEECCTTSSCTTTTGG
T ss_pred EecccCCCHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCcceEEEcCCCcEEeCcCCCcccccCCc
Confidence 99999999999998877778999999999999999999954 689999999999999999999999999998664322
Q ss_pred C--cceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccc
Q 005278 570 D--SVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANL 647 (704)
Q Consensus 570 ~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (704)
. ........+|+.|+|||.+.+..++.++||||||+++|||++|+.|+..... .............
T Consensus 179 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~-~~~~~~~~~~~~~----------- 246 (298)
T 3pls_A 179 YYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHID-PFDLTHFLAQGRR----------- 246 (298)
T ss_dssp GGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSC-GGGHHHHHHTTCC-----------
T ss_pred ccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccCC-HHHHHHHhhcCCC-----------
Confidence 1 1122344678999999999999999999999999999999996665433211 1222222221111
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHHhhhh
Q 005278 648 VREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEKFLDD 699 (704)
Q Consensus 648 ~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~~~ 699 (704)
...+..++..+.+++..||+.||++|||+.|+++.|+++.+.+..+
T Consensus 247 ------~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~l~~~ 292 (298)
T 3pls_A 247 ------LPQPEYCPDSLYQVMQQCWEADPAVRPTFRVLVGEVEQIVSALLGD 292 (298)
T ss_dssp ------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHCCSC
T ss_pred ------CCCCccchHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHHhcc
Confidence 1112234567889999999999999999999999999998876543
No 115
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=100.00 E-value=4.4e-41 Score=343.32 Aligned_cols=253 Identities=22% Similarity=0.326 Sum_probs=203.5
Q ss_pred hCCCCccccccccCceEEEEEEEC-CC-------CEEEEEEeeccchhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCe
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DG-------TNVAIKVFNLQLERASRSFDSECEILRSIRHRNLIKIISNCCNIDF 485 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~-------~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~ 485 (704)
.++|...+.||+|+||.||+|+.. ++ ..||+|++........+.+.+|++++++++||||+++++++.+.+.
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 86 (289)
T 4fvq_A 7 NEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDE 86 (289)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTTC
T ss_pred hhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCCC
Confidence 357888999999999999999854 33 4799999976656667789999999999999999999999999999
Q ss_pred EEEEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCc--------EEEe
Q 005278 486 KALVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMT--------AHVS 557 (704)
Q Consensus 486 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~--------~kl~ 557 (704)
.++||||+++|+|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++. +||+
T Consensus 87 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~kl~ 163 (289)
T 4fvq_A 87 NILVQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMHFLE---ENTLIHGNVCAKNILLIREEDRKTGNPPFIKLS 163 (289)
T ss_dssp CEEEEECCTTCBHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEEECCBGGGTBCCEEEEC
T ss_pred CEEEEECCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHh---hCCeECCCcCcceEEEecCCcccccccceeeec
Confidence 99999999999999999987767999999999999999999995 578999999999999998887 9999
Q ss_pred eeccceecCCCCCcceeccccccccccCCcccCC-CCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcC
Q 005278 558 DFGISKLLGEGDDSVIQTMTIATIGYMAPEYGSE-GIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLP 636 (704)
Q Consensus 558 Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~ 636 (704)
|||++..... .....||+.|+|||++.+ ..++.++||||||+++|||++|..|+........ ....... .
T Consensus 164 Dfg~~~~~~~------~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~-~~~~~~~--~ 234 (289)
T 4fvq_A 164 DPGISITVLP------KDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQR-KLQFYED--R 234 (289)
T ss_dssp CCCSCTTTSC------HHHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHH-HHHHHHT--T
T ss_pred cCcccccccC------ccccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccchHH-HHHHhhc--c
Confidence 9999875422 223458899999999877 7799999999999999999996554432111111 1111110 0
Q ss_pred CCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHH
Q 005278 637 DGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEK 695 (704)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~ 695 (704)
.. .+...+..+.+++..||+.||++||++.|+++.|+++...
T Consensus 235 ~~-----------------~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~l~~p 276 (289)
T 4fvq_A 235 HQ-----------------LPAPKAAELANLINNCMDYEPDHRPSFRAIIRDLNSLFTP 276 (289)
T ss_dssp CC-----------------CCCCSSCTTHHHHHHHSCSSGGGSCCHHHHHHHHHTCC--
T ss_pred CC-----------------CCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcCC
Confidence 00 0011134567899999999999999999999999987543
No 116
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=100.00 E-value=8.6e-40 Score=334.99 Aligned_cols=266 Identities=19% Similarity=0.215 Sum_probs=208.8
Q ss_pred HhCCCCccccccccCceEEEEEEE-CCCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCCCceEEeee-eeCCeEEEEE
Q 005278 413 ATNGFNECNLLGTGSFGSVYKGTL-FDGTNVAIKVFNLQLERASRSFDSECEILRSIRHRNLIKIISNC-CNIDFKALVL 490 (704)
Q Consensus 413 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~-~~~~~~~lv~ 490 (704)
..++|+..+.||+|+||.||+|+. .+++.||||++.... ....+.+|+.+++.++|++++..++++ ...+..++||
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~ 84 (296)
T 4hgt_A 7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT--KHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVM 84 (296)
T ss_dssp ----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC-----CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEE
T ss_pred cCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccc--cchHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEEE
Confidence 457899999999999999999996 578999999875432 234588899999999988877766665 6677889999
Q ss_pred eccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeee---CCCCcEEEeeeccceecCC
Q 005278 491 EFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILL---DENMTAHVSDFGISKLLGE 567 (704)
Q Consensus 491 e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~---~~~~~~kl~Dfgla~~~~~ 567 (704)
||+ +|+|.+++......+++..+..++.|++.||+||| +.+|+||||||+||++ +.++.+||+|||+++....
T Consensus 85 e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~~ 160 (296)
T 4hgt_A 85 ELL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIH---SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRD 160 (296)
T ss_dssp ECC-CCBHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECCGGGTTCEEECCCTTCEECBC
T ss_pred Ecc-CCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeeeeccCCCCeEEEecCccceeccC
Confidence 999 99999999876667999999999999999999995 4689999999999999 7889999999999988755
Q ss_pred CCCc-----ceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccc--cHHHHHHhhcCCCcc
Q 005278 568 GDDS-----VIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEM--SLKHWVKESLPDGLT 640 (704)
Q Consensus 568 ~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~--~~~~~~~~~~~~~~~ 640 (704)
.... .......||+.|+|||.+.+..++.++|||||||++|||++|+.||........ ............
T Consensus 161 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~--- 237 (296)
T 4hgt_A 161 ARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMST--- 237 (296)
T ss_dssp TTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHS---
T ss_pred cccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhhhcccccc---
Confidence 4321 122345799999999999999999999999999999999999999986432211 111111100000
Q ss_pred hhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHHhhh
Q 005278 641 EVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEKFLD 698 (704)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~~ 698 (704)
+.......++..+.+++..||+.||++||++.|+++.|+++.++...
T Consensus 238 -----------~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~~~~~~ 284 (296)
T 4hgt_A 238 -----------PIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGF 284 (296)
T ss_dssp -----------CHHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHHTC
T ss_pred -----------hhhhhhccCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 00111123467889999999999999999999999999999876653
No 117
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.3e-40 Score=372.95 Aligned_cols=257 Identities=25% Similarity=0.414 Sum_probs=206.1
Q ss_pred cccccCceEEEEEEEC---CCCEEEEEEeeccc-hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEEeccCCCC
Q 005278 422 LLGTGSFGSVYKGTLF---DGTNVAIKVFNLQL-ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVLEFMPNGS 497 (704)
Q Consensus 422 ~ig~G~~g~V~~~~~~---~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gs 497 (704)
.||+|+||.||+|.+. ++..||||+++... ....+.+.+|++++++++||||+++++++.. +..++||||+++|+
T Consensus 343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv~E~~~~g~ 421 (613)
T 2ozo_A 343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVMEMAGGGP 421 (613)
T ss_dssp EEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEEEECCTTCB
T ss_pred EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEEEEeCCCCc
Confidence 7999999999999864 46679999997653 2356789999999999999999999999976 56899999999999
Q ss_pred HHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCCCc-ceecc
Q 005278 498 LEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGDDS-VIQTM 576 (704)
Q Consensus 498 L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~~~-~~~~~ 576 (704)
|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.+...... .....
T Consensus 422 L~~~l~~~~~~l~~~~~~~i~~qi~~~L~~LH---~~~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~ 498 (613)
T 2ozo_A 422 LHKFLVGKREEIPVSNVAELLHQVSMGMKYLE---EKNFVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSA 498 (613)
T ss_dssp HHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCCSTTTTCC-----------
T ss_pred HHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---HCCEEcCcCCHHHEEEcCCCcEEEeeccCcccccCCCceeeeccC
Confidence 99999877777999999999999999999995 468999999999999999999999999999876443221 11223
Q ss_pred ccccccccCCcccCCCCCCcccceeeHHHHHHHHhh-CCCCCCccccccccHHHHHHhhcCCCcchhccccchhhhhhhh
Q 005278 577 TIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFT-RKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLVREEQAFS 655 (704)
Q Consensus 577 ~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (704)
..+|+.|+|||++.+..++.++|||||||++|||+| |+.||.+.... .....+.... ...
T Consensus 499 ~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~--~~~~~i~~~~-----------------~~~ 559 (613)
T 2ozo_A 499 GKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGP--EVMAFIEQGK-----------------RME 559 (613)
T ss_dssp ---CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCSH--HHHHHHHTTC-----------------CCC
T ss_pred CCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCHH--HHHHHHHcCC-----------------CCC
Confidence 346789999999998999999999999999999998 99999764321 1112111110 111
Q ss_pred hhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHHhhhhhc
Q 005278 656 VKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEKFLDDVA 701 (704)
Q Consensus 656 ~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~~~~~ 701 (704)
.+..++..+.+++..||+.||++||++.+|++.|+.+.........
T Consensus 560 ~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~~~~~~~ 605 (613)
T 2ozo_A 560 CPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLASKVE 605 (613)
T ss_dssp CCTTCCHHHHHHHHHTTCSSTTTSCCHHHHHHHHHHHHHHHSCSCC
T ss_pred CCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHHhccccC
Confidence 2234567899999999999999999999999999998777665543
No 118
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=100.00 E-value=7.8e-41 Score=341.32 Aligned_cols=259 Identities=24% Similarity=0.385 Sum_probs=214.1
Q ss_pred HhCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEEe
Q 005278 413 ATNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQLERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVLE 491 (704)
Q Consensus 413 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 491 (704)
..++|+..+.||+|+||.||+|... ++..||+|++... ....+.+.+|++++++++||||+++++++.+.+..++|||
T Consensus 11 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e 89 (288)
T 3kfa_A 11 ERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITE 89 (288)
T ss_dssp CGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSC-STHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEE
T ss_pred cccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcC-HHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEEEE
Confidence 4568889999999999999999975 4889999998754 3345678999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHhhC-CCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCCC
Q 005278 492 FMPNGSLEKWLYSH-NYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGDD 570 (704)
Q Consensus 492 ~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~~ 570 (704)
|+++|+|.+++... ...+++..+..++.|++.|++|||. .+|+||||||+||+++.++.+||+|||++.......
T Consensus 90 ~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~- 165 (288)
T 3kfa_A 90 FMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDT- 165 (288)
T ss_dssp CCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHHH---HTCCCSCCSGGGEEECGGGCEEECCCCGGGTSCSSS-
T ss_pred cCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHHH---CCccCCCCCcceEEEcCCCCEEEccCccceeccCCc-
Confidence 99999999999864 4558999999999999999999964 679999999999999999999999999998765432
Q ss_pred cceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhh-CCCCCCccccccccHHHHHHhhcCCCcchhccccchh
Q 005278 571 SVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFT-RKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLVR 649 (704)
Q Consensus 571 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (704)
........+|+.|+|||++.+..++.++||||||+++|+|++ |..||...... ...........
T Consensus 166 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~~--~~~~~~~~~~~------------- 230 (288)
T 3kfa_A 166 YTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS--QVYELLEKDYR------------- 230 (288)
T ss_dssp SEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGG--GHHHHHHTTCC-------------
T ss_pred cccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHHHhccCC-------------
Confidence 223344567889999999998899999999999999999999 99998763221 12222111110
Q ss_pred hhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHH
Q 005278 650 EEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEK 695 (704)
Q Consensus 650 ~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~ 695 (704)
...+..++..+.+++..|++.||++||++.|+++.|+++.++
T Consensus 231 ----~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~~~~~l~~~~~~ 272 (288)
T 3kfa_A 231 ----MERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQE 272 (288)
T ss_dssp ----CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred ----CCCCCCCCHHHHHHHHHHhCCChhhCcCHHHHHHHHHHHHHh
Confidence 111223456788999999999999999999999999987554
No 119
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.6e-40 Score=353.21 Aligned_cols=262 Identities=21% Similarity=0.254 Sum_probs=207.1
Q ss_pred chHHHHHHhCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccc---hhhhHHHHHHHHHHHhcCCCCCceEEeeee
Q 005278 406 SYLDIQRATNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL---ERASRSFDSECEILRSIRHRNLIKIISNCC 481 (704)
Q Consensus 406 ~~~~~~~~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~ 481 (704)
.+.+.+...++|+..+.||+|+||.||+|+.. +|+.||||++.... ....+.+.+|..++..++||||+++++++.
T Consensus 52 ~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~ 131 (412)
T 2vd5_A 52 RLKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQ 131 (412)
T ss_dssp HHHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEE
T ss_pred hhhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEe
Confidence 34445556789999999999999999999975 79999999997532 223345889999999999999999999999
Q ss_pred eCCeEEEEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeecc
Q 005278 482 NIDFKALVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGI 561 (704)
Q Consensus 482 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgl 561 (704)
+.+..++||||+++|+|.+++.+.+..+++..+..++.|++.||+||| +.+|+||||||+||+++.++++||+|||+
T Consensus 132 ~~~~~~lVmE~~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~giiHrDLKp~NILld~~g~vkL~DFGl 208 (412)
T 2vd5_A 132 DENYLYLVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIVMAIDSVH---RLGYVHRDIKPDNILLDRCGHIRLADFGS 208 (412)
T ss_dssp CSSEEEEEECCCCSCBHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTT
T ss_pred eCCEEEEEEcCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecccCHHHeeecCCCCEEEeechh
Confidence 999999999999999999999876667999999999999999999995 47899999999999999999999999999
Q ss_pred ceecCCCCCcceeccccccccccCCcccC-------CCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhh
Q 005278 562 SKLLGEGDDSVIQTMTIATIGYMAPEYGS-------EGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKES 634 (704)
Q Consensus 562 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~-------~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~ 634 (704)
++....... .......||+.|+|||++. ...++.++|||||||++|||++|+.||......+ .+.......
T Consensus 209 a~~~~~~~~-~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~-~~~~i~~~~ 286 (412)
T 2vd5_A 209 CLKLRADGT-VRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTAE-TYGKIVHYK 286 (412)
T ss_dssp CEECCTTSC-EECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHH-HHHHHHTHH
T ss_pred heeccCCCc-cccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCCHHH-HHHHHHhcc
Confidence 987654322 2233457999999999886 4578999999999999999999999997632111 111111000
Q ss_pred cCCCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCC---CCHHHHHH
Q 005278 635 LPDGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQR---VSMKDAAA 687 (704)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~R---pt~~ev~~ 687 (704)
.... .......++.++.+++.+|+. +|++| |+++|+++
T Consensus 287 ~~~~--------------~p~~~~~~s~~~~dli~~lL~-~p~~Rlgr~~~~ei~~ 327 (412)
T 2vd5_A 287 EHLS--------------LPLVDEGVPEEARDFIQRLLC-PPETRLGRGGAGDFRT 327 (412)
T ss_dssp HHCC--------------CC----CCCHHHHHHHHTTSS-CGGGCTTTTTHHHHHT
T ss_pred cCcC--------------CCccccCCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhc
Confidence 0000 000112345678899999999 99998 58888843
No 120
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=100.00 E-value=1.2e-40 Score=354.05 Aligned_cols=258 Identities=19% Similarity=0.245 Sum_probs=206.0
Q ss_pred HHHHHHhCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccc---hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeC
Q 005278 408 LDIQRATNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL---ERASRSFDSECEILRSIRHRNLIKIISNCCNI 483 (704)
Q Consensus 408 ~~~~~~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~ 483 (704)
.+++...++|+..+.||+|+||+||+|+.. +++.||+|++.... ....+.+.+|+.+++.++||||+++++++.+.
T Consensus 62 ~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~ 141 (410)
T 3v8s_A 62 RDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDD 141 (410)
T ss_dssp HHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred HhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEEC
Confidence 344556789999999999999999999965 68999999987532 12334588999999999999999999999999
Q ss_pred CeEEEEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccce
Q 005278 484 DFKALVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISK 563 (704)
Q Consensus 484 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~ 563 (704)
+..++||||+++|+|.+++... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+|+
T Consensus 142 ~~~~lV~E~~~gg~L~~~l~~~--~~~e~~~~~~~~qi~~aL~~LH---~~givHrDLKp~NILl~~~g~ikL~DFG~a~ 216 (410)
T 3v8s_A 142 RYLYMVMEYMPGGDLVNLMSNY--DVPEKWARFYTAEVVLALDAIH---SMGFIHRDVKPDNMLLDKSGHLKLADFGTCM 216 (410)
T ss_dssp SEEEEEECCCTTEEHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred CEEEEEEeCCCCCcHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCCHHHeeECCCCCEEEeccceeE
Confidence 9999999999999999999764 3889999999999999999995 4789999999999999999999999999998
Q ss_pred ecCCCCCcceeccccccccccCCcccCCCC----CCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCc
Q 005278 564 LLGEGDDSVIQTMTIATIGYMAPEYGSEGI----ISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGL 639 (704)
Q Consensus 564 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~----~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~ 639 (704)
...... ........||+.|+|||++.+.. ++.++|||||||++|||++|+.||.+.... ..+........
T Consensus 217 ~~~~~~-~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~-~~~~~i~~~~~---- 290 (410)
T 3v8s_A 217 KMNKEG-MVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLV-GTYSKIMNHKN---- 290 (410)
T ss_dssp ECCTTS-EEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCSSHH-HHHHHHHTHHH----
T ss_pred eeccCC-cccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCCChh-hHHHHHHhccc----
Confidence 765432 12233567999999999987655 788999999999999999999999753211 11111111000
Q ss_pred chhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCC--CCCHHHHHH
Q 005278 640 TEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQ--RVSMKDAAA 687 (704)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~--Rpt~~ev~~ 687 (704)
....+....++..+.+++.+|++.+|++ ||++.||++
T Consensus 291 -----------~~~~p~~~~~s~~~~~li~~lL~~~~~rlgR~~~~ei~~ 329 (410)
T 3v8s_A 291 -----------SLTFPDDNDISKEAKNLICAFLTDREVRLGRNGVEEIKR 329 (410)
T ss_dssp -----------HCCCCTTCCCCHHHHHHHHHHSSCGGGCTTSSCHHHHHT
T ss_pred -----------cccCCCcccccHHHHHHHHHHccChhhhCCCCCHHHHhc
Confidence 0001111134567889999999999998 999999954
No 121
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=100.00 E-value=3.8e-40 Score=344.21 Aligned_cols=244 Identities=22% Similarity=0.232 Sum_probs=202.4
Q ss_pred CCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccc---hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEE
Q 005278 415 NGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL---ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVL 490 (704)
Q Consensus 415 ~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 490 (704)
++|+..+.||+|+||.||+|+.. +|+.||+|++.... ....+.+.+|+++++.++||||+++++++.+....++||
T Consensus 41 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 120 (350)
T 1rdq_E 41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM 120 (350)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEE
Confidence 57899999999999999999965 69999999997543 223467889999999999999999999999999999999
Q ss_pred eccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCCC
Q 005278 491 EFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGDD 570 (704)
Q Consensus 491 e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~~ 570 (704)
||+++|+|.+++...+ .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 121 e~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~~-- 194 (350)
T 1rdq_E 121 EYVAGGEMFSHLRRIG-RFSEPHARFYAAQIVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR-- 194 (350)
T ss_dssp ECCTTCBHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSC--
T ss_pred cCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCcccccCccceEEECCCCCEEEcccccceeccCC--
Confidence 9999999999998654 3899999999999999999995 578999999999999999999999999999876432
Q ss_pred cceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccchhh
Q 005278 571 SVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLVRE 650 (704)
Q Consensus 571 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (704)
.....||+.|+|||++.+..++.++|||||||++|||++|+.||...... ..+.......
T Consensus 195 ---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~-~~~~~i~~~~---------------- 254 (350)
T 1rdq_E 195 ---TWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPI-QIYEKIVSGK---------------- 254 (350)
T ss_dssp ---BCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHCC----------------
T ss_pred ---cccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCCHH-HHHHHHHcCC----------------
Confidence 23357999999999999999999999999999999999999999753211 0111111100
Q ss_pred hhhhhhhHHHHHHHHHHHhhhcCCCCCCCCC-----HHHHHH
Q 005278 651 EQAFSVKIDCLLSIMHLALDCCMESPEQRVS-----MKDAAA 687 (704)
Q Consensus 651 ~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt-----~~ev~~ 687 (704)
...+..++..+.+++.+||+.||++||+ ++|+++
T Consensus 255 ---~~~p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~ei~~ 293 (350)
T 1rdq_E 255 ---VRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKN 293 (350)
T ss_dssp ---CCCCTTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred ---CCCCCCCCHHHHHHHHHHhhcCHHhccCCccCCHHHHHh
Confidence 0111234567889999999999999998 777754
No 122
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=100.00 E-value=5.8e-40 Score=339.27 Aligned_cols=267 Identities=24% Similarity=0.319 Sum_probs=190.2
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccch-hhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEEe
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQLE-RASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVLE 491 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 491 (704)
.++|+..+.||+|+||.||+|... +|+.||+|++..... ...+.+.+|++++++++||||+++++++...+..++|||
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 83 (317)
T 2pmi_A 4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVFE 83 (317)
T ss_dssp ---------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEEE
T ss_pred ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEEE
Confidence 468899999999999999999854 689999999875432 334678899999999999999999999999999999999
Q ss_pred ccCCCCHHHHHhhC-----CCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecC
Q 005278 492 FMPNGSLEKWLYSH-----NYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLG 566 (704)
Q Consensus 492 ~~~~gsL~~~l~~~-----~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~ 566 (704)
|++ |+|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++...
T Consensus 84 ~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~ 159 (317)
T 2pmi_A 84 FMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCH---ENKILHRDLKPQNLLINKRGQLKLGDFGLARAFG 159 (317)
T ss_dssp CCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCSSCEETT
T ss_pred ecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCChHHeEEcCCCCEEECcCccceecC
Confidence 998 5999998743 245889999999999999999995 4789999999999999999999999999998764
Q ss_pred CCCCcceeccccccccccCCcccCC-CCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhc--CCC-cchh
Q 005278 567 EGDDSVIQTMTIATIGYMAPEYGSE-GIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESL--PDG-LTEV 642 (704)
Q Consensus 567 ~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~--~~~-~~~~ 642 (704)
.... ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||.+....+ .+........ ... +...
T Consensus 160 ~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~-~~~~i~~~~~~~~~~~~~~~ 236 (317)
T 2pmi_A 160 IPVN--TFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDEE-QLKLIFDIMGTPNESLWPSV 236 (317)
T ss_dssp SCCC--CCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCSCCTTTCGGG
T ss_pred CCcc--cCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHH-HHHHHHHHhCCCChhHhhhh
Confidence 3222 2234568999999999876 468999999999999999999999997633211 1111111100 000 0000
Q ss_pred c-----cccch-------hhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 643 V-----DANLV-------REEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 643 ~-----~~~~~-------~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
. .+... ...........++..+.+++.+||+.||++|||++|+++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~ 293 (317)
T 2pmi_A 237 TKLPKYNPNIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALH 293 (317)
T ss_dssp GGCTTCCTTCCCCCCCCSHHHHGGGCSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred hhhhhcccccccccchhHHHhhcccccccCCHHHHHHHHHHCCCCcccCCCHHHHhC
Confidence 0 00000 000000111134567899999999999999999999954
No 123
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=100.00 E-value=3.3e-40 Score=346.83 Aligned_cols=253 Identities=21% Similarity=0.250 Sum_probs=193.9
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEEec
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQLERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVLEF 492 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 492 (704)
.++|...+.||+|+||+||+|+.. +++.||||++.... ...+.+.+|+.+++.++||||+++++++.+.+..++||||
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~ 97 (361)
T 3uc3_A 19 SDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGA-AIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIMEY 97 (361)
T ss_dssp TTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESST-TSCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred CCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCc-cccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEEe
Confidence 468999999999999999999965 78999999987542 3346788999999999999999999999999999999999
Q ss_pred cCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCc--EEEeeeccceecCCCCC
Q 005278 493 MPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMT--AHVSDFGISKLLGEGDD 570 (704)
Q Consensus 493 ~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~--~kl~Dfgla~~~~~~~~ 570 (704)
+++|+|.+++...+ .+++..+..++.|++.||+||| +.+|+||||||+||+++.++. +||+|||+++.....
T Consensus 98 ~~~~~L~~~l~~~~-~~~~~~~~~i~~ql~~~L~~LH---~~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~~-- 171 (361)
T 3uc3_A 98 ASGGELYERICNAG-RFSEDEARFFFQQLLSGVSYCH---SMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLH-- 171 (361)
T ss_dssp CCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCCSCCCCGGGEEECSSSSCCEEECCCCCC--------
T ss_pred CCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEcCCCCceEEEeecCcccccccc--
Confidence 99999999997654 3899999999999999999995 578999999999999987765 999999999754322
Q ss_pred cceeccccccccccCCcccCCCCCCcc-cceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccchh
Q 005278 571 SVIQTMTIATIGYMAPEYGSEGIISPK-SDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLVR 649 (704)
Q Consensus 571 ~~~~~~~~gt~~y~aPE~~~~~~~~~~-~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (704)
.......||+.|+|||++.+..++.+ +||||+||++|||++|+.||....... ..............
T Consensus 172 -~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~-~~~~~~~~~~~~~~---------- 239 (361)
T 3uc3_A 172 -SQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPR-DYRKTIQRILSVKY---------- 239 (361)
T ss_dssp ----------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CC-CHHHHHHHHHTTCC----------
T ss_pred -CCCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHH-HHHHHHHHHhcCCC----------
Confidence 12234569999999999888777655 899999999999999999997643322 22222221111100
Q ss_pred hhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 005278 650 EEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAK 688 (704)
Q Consensus 650 ~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~ 688 (704)
..+....++..+.+++.+||+.||++|||+.|+++.
T Consensus 240 ---~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~h 275 (361)
T 3uc3_A 240 ---SIPDDIRISPECCHLISRIFVADPATRISIPEIKTH 275 (361)
T ss_dssp ---CCCTTSCCCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred ---CCCCcCCCCHHHHHHHHHHccCChhHCcCHHHHHhC
Confidence 001111234567899999999999999999999763
No 124
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=100.00 E-value=9.8e-40 Score=340.61 Aligned_cols=248 Identities=19% Similarity=0.259 Sum_probs=198.8
Q ss_pred CCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccc---hhhhHHHHHHHHHHHhc-CCCCCceEEeeeeeCCeEEEE
Q 005278 415 NGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL---ERASRSFDSECEILRSI-RHRNLIKIISNCCNIDFKALV 489 (704)
Q Consensus 415 ~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv 489 (704)
++|+..+.||+|+||.||+|+.. +++.||+|++.... ....+.+.+|..+++++ +||||+++++++.+.+..++|
T Consensus 9 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv 88 (345)
T 3a8x_A 9 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFV 88 (345)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEEE
Confidence 57888999999999999999965 68999999997643 23345688999999988 899999999999999999999
Q ss_pred EeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCC
Q 005278 490 LEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGD 569 (704)
Q Consensus 490 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~ 569 (704)
|||+++|+|.+++...+ .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++......
T Consensus 89 ~e~~~gg~L~~~l~~~~-~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~~~ 164 (345)
T 3a8x_A 89 IEYVNGGDLMFHMQRQR-KLPEEHARFYSAEISLALNYLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPG 164 (345)
T ss_dssp ECCCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCGGGCBCSCCTT
T ss_pred EeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEECCCCCEEEEeccccccccCCC
Confidence 99999999999998654 4899999999999999999995 4689999999999999999999999999998643222
Q ss_pred CcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccc---cHHHHHHhhcCCCcchhcccc
Q 005278 570 DSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEM---SLKHWVKESLPDGLTEVVDAN 646 (704)
Q Consensus 570 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 646 (704)
.......||+.|+|||++.+..++.++||||+||++|||++|+.||........ ......... +...
T Consensus 165 --~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~-------i~~~- 234 (345)
T 3a8x_A 165 --DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQV-------ILEK- 234 (345)
T ss_dssp --CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHHHHH-------HHHC-
T ss_pred --CcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHHHHH-------HHcC-
Confidence 123445799999999999999999999999999999999999999975321110 000000000 0000
Q ss_pred chhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCH
Q 005278 647 LVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSM 682 (704)
Q Consensus 647 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~ 682 (704)
....+..++..+.+++.+||+.||++||++
T Consensus 235 ------~~~~p~~~s~~~~~li~~lL~~dP~~R~~~ 264 (345)
T 3a8x_A 235 ------QIRIPRSLSVKAASVLKSFLNKDPKERLGC 264 (345)
T ss_dssp ------CCCCCTTSCHHHHHHHHHHTCSSTTTSTTC
T ss_pred ------CCCCCCCCCHHHHHHHHHHhcCCHhHCCCC
Confidence 011122345678899999999999999996
No 125
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=100.00 E-value=6.5e-40 Score=348.21 Aligned_cols=251 Identities=25% Similarity=0.337 Sum_probs=195.8
Q ss_pred CCCCccccccccCceEEEEEEECCCCEEEEEEeeccc--hhhhHHHHHHHHHHHhcC--CCCCceEEeeeeeCCeEEEEE
Q 005278 415 NGFNECNLLGTGSFGSVYKGTLFDGTNVAIKVFNLQL--ERASRSFDSECEILRSIR--HRNLIKIISNCCNIDFKALVL 490 (704)
Q Consensus 415 ~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~--h~niv~l~~~~~~~~~~~lv~ 490 (704)
.+|++.+.||+|+||.||+|...+++.||||++.... ....+.+.+|++++++++ ||||+++++++...+..++||
T Consensus 56 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~ 135 (390)
T 2zmd_A 56 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM 135 (390)
T ss_dssp EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred CceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEEE
Confidence 4689999999999999999998789999999987543 334567899999999996 599999999999999999999
Q ss_pred eccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCCC
Q 005278 491 EFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGDD 570 (704)
Q Consensus 491 e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~~ 570 (704)
| +.+++|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++ ++.+||+|||+++.+.....
T Consensus 136 E-~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~lH---~~~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~~~~ 209 (390)
T 2zmd_A 136 E-CGNIDLNSWLKKKK-SIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTT 209 (390)
T ss_dssp E-CCSEEHHHHHHHCS-SCCHHHHHHHHHHHHHHHHHHH---TTTCCCCCCCGGGEEES-SSCEEECCCSSSCCC-----
T ss_pred e-cCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCHHHEEEE-CCeEEEEecCccccccCCCc
Confidence 9 56889999998664 5788899999999999999995 57899999999999996 58999999999987754433
Q ss_pred cceeccccccccccCCcccCC-----------CCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCc
Q 005278 571 SVIQTMTIATIGYMAPEYGSE-----------GIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGL 639 (704)
Q Consensus 571 ~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~ 639 (704)
........||+.|+|||++.+ ..++.++|||||||++|||++|+.||.........+....
T Consensus 210 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~~~~~~~~-------- 281 (390)
T 2zmd_A 210 SVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAII-------- 281 (390)
T ss_dssp ----CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHH--------
T ss_pred cccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhHHHHHHHHHh--------
Confidence 333345579999999998754 4688999999999999999999999976322111111111
Q ss_pred chhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 005278 640 TEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAK 688 (704)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~ 688 (704)
++.... ..+...+..+.+++..||+.||++||++.|+++.
T Consensus 282 ----~~~~~~-----~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~h 321 (390)
T 2zmd_A 282 ----DPNHEI-----EFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAH 321 (390)
T ss_dssp ----CTTSCC-----CCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred ----CccccC-----CCCccchHHHHHHHHHHcccChhhCCCHHHHhhC
Confidence 110000 0011123467889999999999999999999753
No 126
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=100.00 E-value=1.1e-40 Score=338.62 Aligned_cols=260 Identities=23% Similarity=0.397 Sum_probs=210.0
Q ss_pred hCCCCccccccccCceEEEEEEECCCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEEecc
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLFDGTNVAIKVFNLQLERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVLEFM 493 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 493 (704)
.++|+..+.||+|+||.||+|+..+++.||||++.... ...+.+.+|++++++++||||+++++++.+ +..++||||+
T Consensus 12 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~v~e~~ 89 (279)
T 1qpc_A 12 RETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGS-MSPDAFLAEANLMKQLQHQRLVRLYAVVTQ-EPIYIITEYM 89 (279)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEEECC
T ss_pred HHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCc-ccHHHHHHHHHHHHhCCCcCcceEEEEEcC-CCcEEEEecC
Confidence 46788899999999999999998888899999986542 345678999999999999999999999864 4578999999
Q ss_pred CCCCHHHHHhhCC-CccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCCCcc
Q 005278 494 PNGSLEKWLYSHN-YFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGDDSV 572 (704)
Q Consensus 494 ~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~~~~ 572 (704)
++|+|.+++.... ..+++..+..++.|++.||+||| +.+|+||||||+||++++++.+||+|||++........ .
T Consensus 90 ~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-~ 165 (279)
T 1qpc_A 90 ENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEY-T 165 (279)
T ss_dssp TTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCE-E
T ss_pred CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHhhEEEcCCCCEEECCCcccccccCccc-c
Confidence 9999999997542 35899999999999999999995 47899999999999999999999999999987754321 1
Q ss_pred eeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhh-CCCCCCccccccccHHHHHHhhcCCCcchhccccchhhh
Q 005278 573 IQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFT-RKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLVREE 651 (704)
Q Consensus 573 ~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (704)
......+++.|+|||++.+..++.++||||||+++|||++ |+.||.+.... ..........
T Consensus 166 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~--~~~~~~~~~~---------------- 227 (279)
T 1qpc_A 166 AREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNP--EVIQNLERGY---------------- 227 (279)
T ss_dssp CCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHH--HHHHHHHTTC----------------
T ss_pred cccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCHH--HHHHHHhccc----------------
Confidence 2233457889999999988889999999999999999999 89998763221 1111111100
Q ss_pred hhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHHhhh
Q 005278 652 QAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEKFLD 698 (704)
Q Consensus 652 ~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~~ 698 (704)
....+..++..+.+++..|++.||++||++.++++.|+++......
T Consensus 228 -~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~~ 273 (279)
T 1qpc_A 228 -RMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTATEG 273 (279)
T ss_dssp -CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC--
T ss_pred -CCCCcccccHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHhccC
Confidence 0011123456788999999999999999999999999998765443
No 127
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=100.00 E-value=1.7e-39 Score=332.73 Aligned_cols=265 Identities=19% Similarity=0.216 Sum_probs=211.7
Q ss_pred hCCCCccccccccCceEEEEEEE-CCCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCCCceEEeee-eeCCeEEEEEe
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTL-FDGTNVAIKVFNLQLERASRSFDSECEILRSIRHRNLIKIISNC-CNIDFKALVLE 491 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~-~~~~~~~lv~e 491 (704)
.++|...+.||+|+||.||+|+. .+++.||||++.... ..+.+.+|+.+++.++|++++..+.++ ...+..++|||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e 85 (296)
T 3uzp_A 8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT--KHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVME 85 (296)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCS--SCCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCc--chhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEEE
Confidence 46899999999999999999996 579999999986542 335689999999999988877666655 56778899999
Q ss_pred ccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeee---CCCCcEEEeeeccceecCCC
Q 005278 492 FMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILL---DENMTAHVSDFGISKLLGEG 568 (704)
Q Consensus 492 ~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~---~~~~~~kl~Dfgla~~~~~~ 568 (704)
|+ +++|.+++......+++..+..++.|++.||+||| +.+|+||||||+||++ +.++.+||+|||++......
T Consensus 86 ~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~ 161 (296)
T 3uzp_A 86 LL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIH---SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDA 161 (296)
T ss_dssp CC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECCGGGTTCEEECCCTTCEECBCT
T ss_pred ec-CCCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHeEEecCCCCCeEEEeeCCCccccccc
Confidence 99 89999999866667999999999999999999995 4689999999999999 48889999999999887554
Q ss_pred CCcc-----eeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCcccccc--ccHHHHHHhhcCCCcch
Q 005278 569 DDSV-----IQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGE--MSLKHWVKESLPDGLTE 641 (704)
Q Consensus 569 ~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~--~~~~~~~~~~~~~~~~~ 641 (704)
.... ......||+.|+|||++.+..++.++|||||||++|||++|+.||....... ..+..........
T Consensus 162 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~---- 237 (296)
T 3uzp_A 162 RTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMST---- 237 (296)
T ss_dssp TTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHS----
T ss_pred ccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhcccccCC----
Confidence 3211 1234579999999999999999999999999999999999999998643221 1111111110000
Q ss_pred hccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHHhhh
Q 005278 642 VVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEKFLD 698 (704)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~~ 698 (704)
+.......++..+.+++..||+.||++||++.|+++.|+++..+...
T Consensus 238 ----------~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~~~ 284 (296)
T 3uzp_A 238 ----------PIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGF 284 (296)
T ss_dssp ----------CHHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHTTC
T ss_pred ----------chHHHHhhCCHHHHHHHHHHHhcCcCcCCCHHHHHHHHHHHHHhcCC
Confidence 00111224467789999999999999999999999999998776543
No 128
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=8.9e-40 Score=345.10 Aligned_cols=254 Identities=18% Similarity=0.144 Sum_probs=207.6
Q ss_pred HhCCCCccccccccCceEEEEEE------ECCCCEEEEEEeeccchhhhHHHHHHHHHHHhcC---CCCCceEEeeeeeC
Q 005278 413 ATNGFNECNLLGTGSFGSVYKGT------LFDGTNVAIKVFNLQLERASRSFDSECEILRSIR---HRNLIKIISNCCNI 483 (704)
Q Consensus 413 ~~~~~~~~~~ig~G~~g~V~~~~------~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~---h~niv~l~~~~~~~ 483 (704)
..++|.+.+.||+|+||+||+|. ..+++.||||++... ....+..|+++++.++ |+||+++++++...
T Consensus 63 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~~ 139 (365)
T 3e7e_A 63 GSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA---NPWEFYIGTQLMERLKPSMQHMFMKFYSAHLFQ 139 (365)
T ss_dssp SSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC---CHHHHHHHHHHHHHSCGGGGGGBCCEEEEEECS
T ss_pred CCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC---ChhHHHHHHHHHHHhhhhhhhhhhhhheeeecC
Confidence 45678999999999999999994 456899999998654 3456788888888887 99999999999999
Q ss_pred CeEEEEEeccCCCCHHHHHhh----CCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCC---------
Q 005278 484 DFKALVLEFMPNGSLEKWLYS----HNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDE--------- 550 (704)
Q Consensus 484 ~~~~lv~e~~~~gsL~~~l~~----~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~--------- 550 (704)
+..++||||+++|+|.+++.. ....+++..++.++.|++.||+||| +.+|+||||||+||+++.
T Consensus 140 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH---~~~ivHrDiKp~NIll~~~~~~~~~~~ 216 (365)
T 3e7e_A 140 NGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVH---DCEIIHGDIKPDNFILGNGFLEQDDED 216 (365)
T ss_dssp SCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECGGGTCC----
T ss_pred CCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHh---hCCeecCCCCHHHEEecccccCccccc
Confidence 999999999999999999974 3456999999999999999999995 578999999999999998
Q ss_pred --CCcEEEeeeccceecCCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHH
Q 005278 551 --NMTAHVSDFGISKLLGEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLK 628 (704)
Q Consensus 551 --~~~~kl~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~ 628 (704)
++.+||+|||+|+.+.............||++|+|||++.+..++.++|||||||++|||+||+.||.....+...
T Consensus 217 ~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~-- 294 (365)
T 3e7e_A 217 DLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGGECK-- 294 (365)
T ss_dssp --CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEETTEEE--
T ss_pred cccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccCCCCcee--
Confidence 8999999999998765444444455667999999999999999999999999999999999999998653221110
Q ss_pred HHHHhhcCCCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCC-CCHHHHHHHHHHhHHHh
Q 005278 629 HWVKESLPDGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQR-VSMKDAAAKLKKIKEKF 696 (704)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~R-pt~~ev~~~L~~~~~~~ 696 (704)
....+... .....+.+++..|++.+|.+| |+++++.+.|+++.+..
T Consensus 295 --------------~~~~~~~~--------~~~~~~~~~~~~~l~~~p~~r~~~~~~l~~~l~~~l~~~ 341 (365)
T 3e7e_A 295 --------------PEGLFRRL--------PHLDMWNEFFHVMLNIPDCHHLPSLDLLRQKLKKVFQQH 341 (365)
T ss_dssp --------------ECSCCTTC--------SSHHHHHHHHHHHHCCCCTTCCCCHHHHHHHHHHHHHHH
T ss_pred --------------echhcccc--------CcHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHHh
Confidence 00111100 113456678999999999999 57888898888876554
No 129
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=100.00 E-value=4.3e-40 Score=333.95 Aligned_cols=249 Identities=24% Similarity=0.382 Sum_probs=184.7
Q ss_pred hCCCCccccccccCceEEEEEEE-CCCCEEEEEEeeccch---hhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEE
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTL-FDGTNVAIKVFNLQLE---RASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALV 489 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 489 (704)
.++|.+.+.||+|+||.||+|+. .+|+.||||++..... ...+.+.+|+.++++++||||+++++++.+.+..++|
T Consensus 10 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 89 (278)
T 3cok_A 10 IEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLV 89 (278)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEE
T ss_pred cccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEE
Confidence 35788999999999999999986 4799999999875432 2236789999999999999999999999999999999
Q ss_pred EeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCC
Q 005278 490 LEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGD 569 (704)
Q Consensus 490 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~ 569 (704)
|||+++++|.+++......+++..++.++.|++.|++||| +.+|+||||||+||+++.++.+||+|||++.......
T Consensus 90 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~ 166 (278)
T 3cok_A 90 LEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLH---SHGILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPH 166 (278)
T ss_dssp EECCTTEEHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSSCCGGGEEECTTCCEEECCCTTCEECC---
T ss_pred EecCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCCEEEEeecceeeccCCC
Confidence 9999999999999877677999999999999999999995 4689999999999999999999999999998764322
Q ss_pred CcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccchh
Q 005278 570 DSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLVR 649 (704)
Q Consensus 570 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (704)
. ......||+.|+|||.+.+..++.++||||||+++|||++|+.||........ .........
T Consensus 167 ~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~-------------~~~~~~~~~-- 229 (278)
T 3cok_A 167 E--KHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNT-------------LNKVVLADY-- 229 (278)
T ss_dssp ---------------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC------------------CCSSCC--
T ss_pred C--cceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHHHH-------------HHHHhhccc--
Confidence 1 12234689999999999998999999999999999999999999975321110 000000000
Q ss_pred hhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 650 EEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 650 ~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
..+..++..+.+++.+||+.||++||+++|+++
T Consensus 230 -----~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 262 (278)
T 3cok_A 230 -----EMPSFLSIEAKDLIHQLLRRNPADRLSLSSVLD 262 (278)
T ss_dssp -----CCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred -----CCccccCHHHHHHHHHHcccCHhhCCCHHHHhc
Confidence 011223557889999999999999999999965
No 130
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=100.00 E-value=1.3e-39 Score=336.07 Aligned_cols=263 Identities=22% Similarity=0.304 Sum_probs=201.3
Q ss_pred hCCCCccccccccCceEEEEEEE-CCCCEEEEEEeeccc---hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEE
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTL-FDGTNVAIKVFNLQL---ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALV 489 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 489 (704)
.++|...+.||+|+||.||+|.. .+|+.||||++.... ......+.+|+.++++++||||+++++++...+..++|
T Consensus 31 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv 110 (310)
T 2wqm_A 31 LANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIV 110 (310)
T ss_dssp GGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred ccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEE
Confidence 35788999999999999999986 479999999987432 33456789999999999999999999999999999999
Q ss_pred EeccCCCCHHHHHhh---CCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecC
Q 005278 490 LEFMPNGSLEKWLYS---HNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLG 566 (704)
Q Consensus 490 ~e~~~~gsL~~~l~~---~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~ 566 (704)
|||+++|+|.+++.. ....+++..++.++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++....
T Consensus 111 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~ 187 (310)
T 2wqm_A 111 LELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMH---SRRVMHRDIKPANVFITATGVVKLGDLGLGRFFS 187 (310)
T ss_dssp EECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCC-------
T ss_pred EecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHh---hCCeeCCCCcHHHEEEcCCCCEEEEeccceeeec
Confidence 999999999999974 3456899999999999999999995 4789999999999999999999999999998764
Q ss_pred CCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhcccc
Q 005278 567 EGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDAN 646 (704)
Q Consensus 567 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (704)
.... ......|++.|+|||++.+..++.++||||||+++|||++|+.||.+.... ...+............
T Consensus 188 ~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~---~~~~~~~~~~~~~~~~---- 258 (310)
T 2wqm_A 188 SKTT--AAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMN---LYSLCKKIEQCDYPPL---- 258 (310)
T ss_dssp -------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---CC---HHHHHHHHHTTCSCCC----
T ss_pred CCCc--cccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchh---HHHHHHHhhcccCCCC----
Confidence 3221 123346899999999999999999999999999999999999999753222 1122111111100000
Q ss_pred chhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHHhh
Q 005278 647 LVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEKFL 697 (704)
Q Consensus 647 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~ 697 (704)
....++..+.+++..||+.||++||++.||++.|+++++...
T Consensus 259 ---------~~~~~~~~l~~li~~~l~~dp~~Rps~~~il~~l~~l~~~~~ 300 (310)
T 2wqm_A 259 ---------PSDHYSEELRQLVNMCINPDPEKRPDVTYVYDVAKRMHACTA 300 (310)
T ss_dssp ---------CTTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC
T ss_pred ---------cccccCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhhh
Confidence 011345678899999999999999999999999999987654
No 131
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=100.00 E-value=3.5e-40 Score=341.40 Aligned_cols=264 Identities=22% Similarity=0.260 Sum_probs=209.1
Q ss_pred hCCCCccccccccCceEEEEEEE-CCCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCCCceEEeeeee----CCeEEE
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTL-FDGTNVAIKVFNLQLERASRSFDSECEILRSIRHRNLIKIISNCCN----IDFKAL 488 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~----~~~~~l 488 (704)
.++|+..+.||+|+||.||+|+. .+++.||||++........+.+.+|+++++.++||||+++++++.. ....++
T Consensus 28 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~l 107 (317)
T 2buj_A 28 NKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWL 107 (317)
T ss_dssp TEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEEE
T ss_pred CeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeEE
Confidence 46789999999999999999996 5799999999876555666789999999999999999999999863 347789
Q ss_pred EEeccCCCCHHHHHhh---CCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceec
Q 005278 489 VLEFMPNGSLEKWLYS---HNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLL 565 (704)
Q Consensus 489 v~e~~~~gsL~~~l~~---~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~ 565 (704)
||||+++|+|.+++.. ....+++..++.++.|++.||+|||. .+|+||||||+||+++.++.+||+|||++...
T Consensus 108 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~dlkp~NIl~~~~~~~kl~dfg~~~~~ 184 (317)
T 2buj_A 108 LLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHA---KGYAHRDLKPTNILLGDEGQPVLMDLGSMNQA 184 (317)
T ss_dssp EEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTSCEEECCCSSCEES
T ss_pred EEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEEcCCCCEEEEecCcchhc
Confidence 9999999999999985 35668999999999999999999964 68999999999999999999999999998765
Q ss_pred CCCCCcc-------eeccccccccccCCcccCCCC---CCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhc
Q 005278 566 GEGDDSV-------IQTMTIATIGYMAPEYGSEGI---ISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESL 635 (704)
Q Consensus 566 ~~~~~~~-------~~~~~~gt~~y~aPE~~~~~~---~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~ 635 (704)
....... ......||+.|+|||++.+.. ++.++||||||+++|||++|+.||..................
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~ 264 (317)
T 2buj_A 185 CIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQNQL 264 (317)
T ss_dssp CEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSCHHHHHHCC-
T ss_pred ccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccchhhHHhhccC
Confidence 3211100 012235799999999987544 788999999999999999999999764333222222211100
Q ss_pred CCCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHHhh
Q 005278 636 PDGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEKFL 697 (704)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~ 697 (704)
..+....++..+.+++.+||+.||++||++.|+++.|+++.....
T Consensus 265 -----------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~~~~~ 309 (317)
T 2buj_A 265 -----------------SIPQSPRHSSALWQLLNSMMTVDPHQRPHIPLLLSQLEALQPPAP 309 (317)
T ss_dssp ------------------CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTCCCCC
T ss_pred -----------------CCCccccCCHHHHHHHHHHhhcChhhCCCHHHHHHHhhhcCCCCC
Confidence 001112345678899999999999999999999999998865443
No 132
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=100.00 E-value=2.2e-40 Score=346.80 Aligned_cols=266 Identities=16% Similarity=0.159 Sum_probs=200.8
Q ss_pred hCCCCccccccccCceEEEEEEEC----CCCEEEEEEeeccchh-----------hhHHHHHHHHHHHhcCCCCCceEEe
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF----DGTNVAIKVFNLQLER-----------ASRSFDSECEILRSIRHRNLIKIIS 478 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~----~~~~vavK~~~~~~~~-----------~~~~~~~e~~~l~~l~h~niv~l~~ 478 (704)
.++|...+.||+|+||.||+|+.. ++..+|||++...... ....+.+|+..++.++||||+++++
T Consensus 36 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~ 115 (345)
T 2v62_A 36 GNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYG 115 (345)
T ss_dssp SCEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEE
T ss_pred CceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeec
Confidence 367899999999999999999965 5788999998754211 1234667889999999999999999
Q ss_pred eeee----CCeEEEEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCC--
Q 005278 479 NCCN----IDFKALVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENM-- 552 (704)
Q Consensus 479 ~~~~----~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~-- 552 (704)
++.. ....++||||+ +++|.+++...+ .+++..++.++.|++.||+||| +.+|+||||||+||+++.++
T Consensus 116 ~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~ 190 (345)
T 2v62_A 116 SGLTEFKGRSYRFMVMERL-GIDLQKISGQNG-TFKKSTVLQLGIRMLDVLEYIH---ENEYVHGDIKAANLLLGYKNPD 190 (345)
T ss_dssp EEEEESSSCEEEEEEEECE-EEEHHHHCBGGG-BCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEESSSTT
T ss_pred ccccccCCCcEEEEEEecc-CCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCcCHHHEEEccCCCC
Confidence 9987 67889999999 999999998655 6899999999999999999996 46899999999999999877
Q ss_pred cEEEeeeccceecCCCCCc-----ceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccH
Q 005278 553 TAHVSDFGISKLLGEGDDS-----VIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSL 627 (704)
Q Consensus 553 ~~kl~Dfgla~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~ 627 (704)
.+||+|||+++.+...... .......||+.|+|||++.+..++.++|||||||++|||++|+.||..........
T Consensus 191 ~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~ 270 (345)
T 2v62_A 191 QVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPVAV 270 (345)
T ss_dssp SEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTCHHHH
T ss_pred cEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccccccccHHH
Confidence 9999999999877432211 11234579999999999999999999999999999999999999996532222211
Q ss_pred HHHHHhhcCCCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhH
Q 005278 628 KHWVKESLPDGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIK 693 (704)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~ 693 (704)
.......... .... . ........++..+.+++..||+.||++||++.+|++.|+++.
T Consensus 271 ~~~~~~~~~~-~~~~----~----~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~ 327 (345)
T 2v62_A 271 QTAKTNLLDE-LPQS----V----LKWAPSGSSCCEIAQFLVCAHSLAYDEKPNYQALKKILNPHG 327 (345)
T ss_dssp HHHHHHHHHT-TTHH----H----HHHSCTTSCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHCTTC
T ss_pred HHHHHhhccc-ccHH----H----HhhccccccHHHHHHHHHHHhhcCcccCCCHHHHHHHHhccC
Confidence 1111111000 0000 0 000001134567899999999999999999999999998754
No 133
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=100.00 E-value=5.5e-40 Score=340.74 Aligned_cols=248 Identities=21% Similarity=0.286 Sum_probs=192.2
Q ss_pred hCCCCccccccccCceEEEEEEE----CCCCEEEEEEeeccc----hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCe
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTL----FDGTNVAIKVFNLQL----ERASRSFDSECEILRSIRHRNLIKIISNCCNIDF 485 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~----~~~~~vavK~~~~~~----~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~ 485 (704)
.++|+..+.||+|+||.||+|+. .+++.||+|+++... ......+.+|+.+++.++||||+++++++...+.
T Consensus 16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~ 95 (327)
T 3a62_A 16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGK 95 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSC
T ss_pred HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCE
Confidence 46789999999999999999986 478999999987542 2234567889999999999999999999999999
Q ss_pred EEEEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceec
Q 005278 486 KALVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLL 565 (704)
Q Consensus 486 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~ 565 (704)
.++||||+++|+|.+++...+ .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++..
T Consensus 96 ~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~al~~lH---~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~~ 171 (327)
T 3a62_A 96 LYLILEYLSGGELFMQLEREG-IFMEDTACFYLAEISMALGHLH---QKGIIYRDLKPENIMLNHQGHVKLTDFGLCKES 171 (327)
T ss_dssp EEEEEECCTTEEHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCTTTEEECTTSCEEECCCSCC---
T ss_pred EEEEEeCCCCCcHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHHH---hCCEEcccCCHHHeEECCCCcEEEEeCCccccc
Confidence 999999999999999998654 3788999999999999999995 468999999999999999999999999999764
Q ss_pred CCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccc
Q 005278 566 GEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDA 645 (704)
Q Consensus 566 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (704)
.... .......||+.|+|||++.+..++.++|||||||++|||++|+.||....... .........
T Consensus 172 ~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~-~~~~i~~~~----------- 237 (327)
T 3a62_A 172 IHDG--TVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKK-TIDKILKCK----------- 237 (327)
T ss_dssp ---------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHTC-----------
T ss_pred ccCC--ccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCCHHH-HHHHHHhCC-----------
Confidence 3221 12234579999999999999999999999999999999999999997632111 011111100
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCC-----CHHHHHH
Q 005278 646 NLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRV-----SMKDAAA 687 (704)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rp-----t~~ev~~ 687 (704)
...+..++..+.+++.+||+.||++|| ++.|+++
T Consensus 238 --------~~~p~~~~~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~ 276 (327)
T 3a62_A 238 --------LNLPPYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQA 276 (327)
T ss_dssp --------CCCCTTSCHHHHHHHHHHSCSCGGGSTTSSTTTHHHHHH
T ss_pred --------CCCCCCCCHHHHHHHHHHHhcCHhhccCCCCCCHHHHHc
Confidence 011123356788999999999999999 6667754
No 134
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=100.00 E-value=2.5e-40 Score=343.90 Aligned_cols=260 Identities=23% Similarity=0.377 Sum_probs=206.0
Q ss_pred hCCCCccccccccCceEEEEEEE------CCCCEEEEEEeeccc-hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeE
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTL------FDGTNVAIKVFNLQL-ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFK 486 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~ 486 (704)
.++|...+.||+|+||.||+|+. .+++.||||++.... ......+.+|+.++++++||||+++++++......
T Consensus 29 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 108 (327)
T 2yfx_A 29 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR 108 (327)
T ss_dssp GGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred hhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCCc
Confidence 46899999999999999999983 257789999986443 34556789999999999999999999999999999
Q ss_pred EEEEeccCCCCHHHHHhhCC------CccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCC---CCcEEEe
Q 005278 487 ALVLEFMPNGSLEKWLYSHN------YFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDE---NMTAHVS 557 (704)
Q Consensus 487 ~lv~e~~~~gsL~~~l~~~~------~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~---~~~~kl~ 557 (704)
++||||+++|+|.+++.... ..+++..++.++.|++.||+||| +.+|+||||||+||+++. +..+||+
T Consensus 109 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH---~~~i~H~dlkp~NIli~~~~~~~~~kl~ 185 (327)
T 2yfx_A 109 FILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE---ENHFIHRDIAARNCLLTCPGPGRVAKIG 185 (327)
T ss_dssp EEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESCSSTTCCEEEC
T ss_pred EEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHh---hCCeecCcCCHhHEEEecCCCcceEEEC
Confidence 99999999999999998653 44889999999999999999995 468999999999999994 4469999
Q ss_pred eeccceecCCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhh-CCCCCCccccccccHHHHHHhhcC
Q 005278 558 DFGISKLLGEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFT-RKKPTNEIFIGEMSLKHWVKESLP 636 (704)
Q Consensus 558 Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~ 636 (704)
|||++................||+.|+|||++.+..++.++||||||+++|||+| |..||...... ....++.....
T Consensus 186 Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~--~~~~~~~~~~~ 263 (327)
T 2yfx_A 186 DFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQ--EVLEFVTSGGR 263 (327)
T ss_dssp CCHHHHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH--HHHHHHHTTCC
T ss_pred ccccccccccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCHH--HHHHHHhcCCC
Confidence 9999986644333333344568999999999988899999999999999999998 99998753211 11111111100
Q ss_pred CCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHH
Q 005278 637 DGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEK 695 (704)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~ 695 (704)
...+..++..+.+++..||+.||++||++.|+++.|+.+...
T Consensus 264 -----------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~~~~ 305 (327)
T 2yfx_A 264 -----------------MDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQD 305 (327)
T ss_dssp -----------------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred -----------------CCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHhcC
Confidence 011123456788999999999999999999999999988654
No 135
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=100.00 E-value=1.7e-39 Score=329.34 Aligned_cols=250 Identities=22% Similarity=0.278 Sum_probs=203.7
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEEec
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQLERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVLEF 492 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 492 (704)
.++|...+.||+|+||.||+|+.. ++..||+|++........+.+.+|++++++++||||+++++++.+....++||||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 87 (277)
T 3f3z_A 8 NQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVMEL 87 (277)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred hhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEEec
Confidence 457889999999999999999865 5789999999776555667899999999999999999999999999999999999
Q ss_pred cCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeee---CCCCcEEEeeeccceecCCCC
Q 005278 493 MPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILL---DENMTAHVSDFGISKLLGEGD 569 (704)
Q Consensus 493 ~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~---~~~~~~kl~Dfgla~~~~~~~ 569 (704)
+++++|.+++.... .+++..+..++.|++.|++||| +.+|+||||||+||++ +.++.+||+|||++.......
T Consensus 88 ~~~~~L~~~~~~~~-~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~~~ 163 (277)
T 3f3z_A 88 CTGGELFERVVHKR-VFRESDAARIMKDVLSAVAYCH---KLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGK 163 (277)
T ss_dssp CCSCBHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECCTTS
T ss_pred cCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCCHHHEEEecCCCCCcEEEEecccceeccCcc
Confidence 99999999987654 3899999999999999999995 4789999999999999 788999999999998765432
Q ss_pred CcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccchh
Q 005278 570 DSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLVR 649 (704)
Q Consensus 570 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (704)
......||+.|+|||++.+. ++.++||||||+++|||++|+.||......+ ........... .
T Consensus 164 ---~~~~~~~t~~y~aPE~~~~~-~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~-~~~~~~~~~~~----------~-- 226 (277)
T 3f3z_A 164 ---MMRTKVGTPYYVSPQVLEGL-YGPECDEWSAGVMMYVLLCGYPPFSAPTDSE-VMLKIREGTFT----------F-- 226 (277)
T ss_dssp ---CBCCCCSCTTTCCHHHHTTC-BCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHCCCC----------C--
T ss_pred ---chhccCCCCCccChHHhccc-CCchhhehhHHHHHHHHHHCCCCCCCCCHHH-HHHHHHhCCCC----------C--
Confidence 22345699999999987654 8999999999999999999999997632211 11111110000 0
Q ss_pred hhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 650 EEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 650 ~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
.......++..+.+++.+|++.||++||++.|+++
T Consensus 227 ---~~~~~~~~~~~~~~li~~~l~~dp~~R~s~~~~l~ 261 (277)
T 3f3z_A 227 ---PEKDWLNVSPQAESLIRRLLTKSPKQRITSLQALE 261 (277)
T ss_dssp ---CHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred ---CchhhhcCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 00011134567889999999999999999999964
No 136
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=100.00 E-value=7.4e-40 Score=332.35 Aligned_cols=248 Identities=24% Similarity=0.308 Sum_probs=200.2
Q ss_pred HhCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccc---hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEE
Q 005278 413 ATNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL---ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKAL 488 (704)
Q Consensus 413 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 488 (704)
+.++|++.+.||+|+||.||+|+.. +++.||||++.... ......+.+|+.++++++||||+++++++.+.+..++
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 86 (279)
T 3fdn_A 7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYL 86 (279)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEE
T ss_pred ecccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEE
Confidence 3467899999999999999999865 57899999986543 2234678899999999999999999999999999999
Q ss_pred EEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCC
Q 005278 489 VLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEG 568 (704)
Q Consensus 489 v~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~ 568 (704)
||||+++|+|.+++.... .+++..+..++.|++.|++||| +.+|+||||||+||+++.++.+||+|||++......
T Consensus 87 v~e~~~~~~l~~~l~~~~-~~~~~~~~~~~~qi~~~l~~LH---~~~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~~ 162 (279)
T 3fdn_A 87 ILEYAPLGTVYRELQKLS-KFDEQRTATYITELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS 162 (279)
T ss_dssp EECCCTTEEHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---TTTCEECCCCGGGEEECTTSCEEECSCCEESCC---
T ss_pred EEecCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---hCCEecccCChHhEEEcCCCCEEEEeccccccCCcc
Confidence 999999999999997653 3899999999999999999995 578999999999999999999999999998654322
Q ss_pred CCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccch
Q 005278 569 DDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLV 648 (704)
Q Consensus 569 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (704)
......||+.|+|||.+.+..++.++||||||+++|+|++|+.||...... ........
T Consensus 163 ----~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~-----~~~~~~~~------------ 221 (279)
T 3fdn_A 163 ----RRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQ-----ETYKRISR------------ 221 (279)
T ss_dssp ---------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHH-----HHHHHHHH------------
T ss_pred ----cccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCcHH-----HHHHHHHh------------
Confidence 123456899999999999999999999999999999999999999753211 11110000
Q ss_pred hhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 005278 649 REEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAK 688 (704)
Q Consensus 649 ~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~ 688 (704)
.....+..++..+.+++.+||+.||++||++.|+++.
T Consensus 222 ---~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~h 258 (279)
T 3fdn_A 222 ---VEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLEH 258 (279)
T ss_dssp ---TCCCCCTTSCHHHHHHHHHHCCSSGGGSCCHHHHHHC
T ss_pred ---CCCCCCCcCCHHHHHHHHHHhccChhhCCCHHHHhhC
Confidence 0001112234567899999999999999999999763
No 137
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=8.3e-40 Score=342.89 Aligned_cols=260 Identities=21% Similarity=0.253 Sum_probs=201.5
Q ss_pred HHHHHhCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccc-----hhhhHHHHHHHHHHHhcCCCCCceEEeeeee
Q 005278 409 DIQRATNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL-----ERASRSFDSECEILRSIRHRNLIKIISNCCN 482 (704)
Q Consensus 409 ~~~~~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~-----~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~ 482 (704)
++....++|...+.||+|+||.||+|+.. +++.||+|++.... ....+.+.+|++++++++||||+++++++.+
T Consensus 20 ~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~ 99 (345)
T 3hko_A 20 SLLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYED 99 (345)
T ss_dssp CHHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred hhhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhcc
Confidence 34566778999999999999999999864 68899999986542 2345678999999999999999999999999
Q ss_pred CCeEEEEEeccCCCCHHHHHhhC---------------------------------------CCccCHHHHHHHHHHHHH
Q 005278 483 IDFKALVLEFMPNGSLEKWLYSH---------------------------------------NYFLGILERLNIMIDVGL 523 (704)
Q Consensus 483 ~~~~~lv~e~~~~gsL~~~l~~~---------------------------------------~~~~~~~~~~~i~~~i~~ 523 (704)
.+..++||||+++|+|.+++... ...+++..+..++.|++.
T Consensus 100 ~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~ 179 (345)
T 3hko_A 100 EQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFS 179 (345)
T ss_dssp SSEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHH
Confidence 99999999999999999998521 122467778899999999
Q ss_pred HHHHHHhcCCCCcEecCCCCCCeeeCCCC--cEEEeeeccceecCCCCC--cceeccccccccccCCcccCC--CCCCcc
Q 005278 524 ALEYLHHGHSTPMVHCDLKPNNILLDENM--TAHVSDFGISKLLGEGDD--SVIQTMTIATIGYMAPEYGSE--GIISPK 597 (704)
Q Consensus 524 ~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~--~~kl~Dfgla~~~~~~~~--~~~~~~~~gt~~y~aPE~~~~--~~~~~~ 597 (704)
||+||| +.+|+||||||+||+++.++ .+||+|||+++.+..... ........||+.|+|||++.+ ..++.+
T Consensus 180 ~l~~LH---~~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~ 256 (345)
T 3hko_A 180 ALHYLH---NQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPK 256 (345)
T ss_dssp HHHHHH---HTTEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCCTH
T ss_pred HHHHHH---HCCccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCCcH
Confidence 999995 46899999999999998776 899999999987643222 112345579999999998865 678999
Q ss_pred cceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCC
Q 005278 598 SDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPE 677 (704)
Q Consensus 598 ~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~ 677 (704)
+|||||||++|||++|+.||.+....+. ......... .. ..+....++..+.+++.+||+.||+
T Consensus 257 ~DiwslG~il~el~~g~~pf~~~~~~~~-~~~~~~~~~------------~~---~~~~~~~~~~~~~~li~~~l~~~p~ 320 (345)
T 3hko_A 257 CDAWSAGVLLHLLLMGAVPFPGVNDADT-ISQVLNKKL------------CF---ENPNYNVLSPLARDLLSNLLNRNVD 320 (345)
T ss_dssp HHHHHHHHHHHHHHHSSCSSCCSSHHHH-HHHHHHCCC------------CT---TSGGGGGSCHHHHHHHHHHSCSCTT
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCChHHH-HHHHHhccc------------cc---CCcccccCCHHHHHHHHHHcCCChh
Confidence 9999999999999999999976432211 111111000 00 0011123456788999999999999
Q ss_pred CCCCHHHHHH
Q 005278 678 QRVSMKDAAA 687 (704)
Q Consensus 678 ~Rpt~~ev~~ 687 (704)
+||++.|+++
T Consensus 321 ~Rps~~~~l~ 330 (345)
T 3hko_A 321 ERFDAMRALQ 330 (345)
T ss_dssp TSCCHHHHHH
T ss_pred HCCCHHHHhc
Confidence 9999999965
No 138
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=100.00 E-value=6.7e-40 Score=349.48 Aligned_cols=276 Identities=21% Similarity=0.270 Sum_probs=213.2
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccc-hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCC--eEEEE
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL-ERASRSFDSECEILRSIRHRNLIKIISNCCNID--FKALV 489 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~--~~~lv 489 (704)
.++|.+.+.||+|+||+||+|+.. +|+.||||++.... ....+.+.+|++++++++||||+++++++.... ..++|
T Consensus 8 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv 87 (396)
T 4eut_A 8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLI 87 (396)
T ss_dssp SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEE
T ss_pred CCceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEE
Confidence 357888999999999999999965 58999999997543 234567889999999999999999999998755 77999
Q ss_pred EeccCCCCHHHHHhhCC--CccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeee----CCCCcEEEeeeccce
Q 005278 490 LEFMPNGSLEKWLYSHN--YFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILL----DENMTAHVSDFGISK 563 (704)
Q Consensus 490 ~e~~~~gsL~~~l~~~~--~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~----~~~~~~kl~Dfgla~ 563 (704)
|||+++|+|.+++.... ..+++..++.++.|++.||+||| +.+|+||||||+||++ +.++.+||+|||+++
T Consensus 88 ~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~ 164 (396)
T 4eut_A 88 MEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLR---ENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAAR 164 (396)
T ss_dssp ECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEECTTSCEEEEECCGGGCE
T ss_pred EecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHH---HCCEEECCcCHHHEEEeecCCCceeEEEecCCCce
Confidence 99999999999998543 33899999999999999999995 4689999999999999 778889999999998
Q ss_pred ecCCCCCcceeccccccccccCCcccCC--------CCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHH---HH
Q 005278 564 LLGEGDDSVIQTMTIATIGYMAPEYGSE--------GIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHW---VK 632 (704)
Q Consensus 564 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~--------~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~---~~ 632 (704)
...... ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||............. ..
T Consensus 165 ~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~ 241 (396)
T 4eut_A 165 ELEDDE---QFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIIT 241 (396)
T ss_dssp ECCCGG---GSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTCHHHHHHHHH
T ss_pred EccCCC---ccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccchHHHHHHHhc
Confidence 764432 2234569999999998764 567889999999999999999999997644333222222 11
Q ss_pred hhcCCCcchh---ccccchhh---hhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHH
Q 005278 633 ESLPDGLTEV---VDANLVRE---EQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEK 695 (704)
Q Consensus 633 ~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~ 695 (704)
...+..+... ....+... ..........+..+.+++..||+.||++||+++|+++.++++.++
T Consensus 242 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~~il~~ 310 (396)
T 4eut_A 242 GKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILHR 310 (396)
T ss_dssp SCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHHTC
T ss_pred CCCcccchhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhccChhhhccHHHHHHHHHHHhhc
Confidence 1111111111 00000000 011123356778899999999999999999999999999887653
No 139
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.6e-39 Score=350.66 Aligned_cols=325 Identities=22% Similarity=0.248 Sum_probs=228.6
Q ss_pred CCCCCEEecCCCcCcccCCccccCCCCCCEEeccCcccc-ccCchhhcCCCCCCEEecccccCCCcccchhhcccccCCC
Q 005278 5 LPNLKYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFS-GLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTN 83 (704)
Q Consensus 5 l~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~ 83 (704)
.++|++|+|++|.+++..|..|.++++|++|+|++|.+. .+.+..|.++++|++|+|++|.++...... |.+
T Consensus 29 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-------~~~ 101 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGA-------FNG 101 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTT-------TTT
T ss_pred CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhh-------ccC
Confidence 478999999999999888999999999999999999997 456788999999999999999998765443 899
Q ss_pred CCCCcEEEccCCCCcccCChh--hhhcccccceEEecCCcccccCChh-hhcCCCCCEEEccCCcCccccChhhcCC--C
Q 005278 84 CRNLTVLGLASNPLRGILPPL--IGNFSASLQEFYAYGCKLRGNIPQE-IGNLSGMIVFDLNGCDLNGTIPTAVGRL--R 158 (704)
Q Consensus 84 l~~L~~L~L~~n~i~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~ 158 (704)
+++|++|+|++|++.+..+.. +..+ ++|++|++++|.+.+..|.. +.++++|++|++++|.+.+..+..+..+ .
T Consensus 102 l~~L~~L~L~~n~l~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~ 180 (455)
T 3v47_A 102 LANLEVLTLTQCNLDGAVLSGNFFKPL-TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGK 180 (455)
T ss_dssp CTTCCEEECTTSCCBTHHHHSSTTTTC-TTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTC
T ss_pred cccCCEEeCCCCCCCccccCcccccCc-ccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccc
Confidence 999999999999998755544 6665 47999999999999887876 8999999999999999998888877765 4
Q ss_pred CcCeeeccCcccCCCCCcc--------ccCCCCCCEEEcCCCcCCccCCccccC--------------------------
Q 005278 159 RLQGLYLHGNKLQGSIPYD--------LCHLEGLSELNLNGNKLCGHVPPCLAS-------------------------- 204 (704)
Q Consensus 159 ~L~~L~L~~n~l~~~~~~~--------l~~l~~L~~L~L~~n~l~~~~~~~~~~-------------------------- 204 (704)
+|+.|++++|.+++..+.. +..+++|++|++++|++++..|..+..
T Consensus 181 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 260 (455)
T 3v47_A 181 HFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260 (455)
T ss_dssp EEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCS
T ss_pred cccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhh
Confidence 5566666666655433222 223455555555555554322221111
Q ss_pred -------------cCCCCEEEecCccCCCCCCCcccCCccccEEEecCcccCCCCCcccccCcCCcEEEeecCccCCCCC
Q 005278 205 -------------LTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLNGSLPSNIQNLKVLTNLDLSRNQLSGDIP 271 (704)
Q Consensus 205 -------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 271 (704)
.++|+.|++++|.+++..+..+..+++|++|++++|.+.+..|..|..+++|+.|++++|++++..+
T Consensus 261 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 340 (455)
T 3v47_A 261 FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS 340 (455)
T ss_dssp SCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECG
T ss_pred hccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcCh
Confidence 1456666666666665556666666666666666666665555566666666666666666665555
Q ss_pred CCcCCCCCcceeeccCceeeccCCcccccccccceEEecccCCCCCCCCCcccccccCcccccCCC
Q 005278 272 TTIGGLENLETLSLADNQFQGPVPKSFGSLISLESLDLSRNNLSGEIPKNFSAQSFLSNYALCGPA 337 (704)
Q Consensus 272 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~l~g~~ 337 (704)
..+..+++|+.|+|++|++++..|..+..+++|++|++++|++++..+..|...+.+....+.+++
T Consensus 341 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 341 RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp GGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence 566666666666666666665556666666666666666666665444455555555555555554
No 140
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=100.00 E-value=8.5e-40 Score=353.70 Aligned_cols=247 Identities=26% Similarity=0.399 Sum_probs=203.6
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccch---hhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEE
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQLE---RASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALV 489 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 489 (704)
.++|...+.||+|+||.||+|+.. +|+.||||++..... ...+.+.+|+.+++.++||||+++++++...+..++|
T Consensus 15 ~~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv 94 (476)
T 2y94_A 15 IGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMV 94 (476)
T ss_dssp ETTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred ecCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence 367889999999999999999965 799999999975432 2345789999999999999999999999999999999
Q ss_pred EeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCC
Q 005278 490 LEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGD 569 (704)
Q Consensus 490 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~ 569 (704)
|||+++|+|.+++...+ .+++..+..++.|++.|++||| +.+|+||||||+||+++.++.+||+|||++.......
T Consensus 95 ~E~~~gg~L~~~l~~~~-~l~~~~~~~i~~qi~~aL~~LH---~~givHrDLkp~NIll~~~~~vkL~DFG~a~~~~~~~ 170 (476)
T 2y94_A 95 MEYVSGGELFDYICKNG-RLDEKESRRLFQQILSGVDYCH---RHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGE 170 (476)
T ss_dssp EECCSSEEHHHHTTSSS-SCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCSGGGEEECTTCCEEECCCSSCEECCTTC
T ss_pred EeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCCCcccccHHHEEEecCCCeEEEeccchhhccccc
Confidence 99999999999997653 4899999999999999999994 5789999999999999999999999999998875432
Q ss_pred CcceeccccccccccCCcccCCCCC-CcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccch
Q 005278 570 DSVIQTMTIATIGYMAPEYGSEGII-SPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLV 648 (704)
Q Consensus 570 ~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (704)
......||+.|+|||++.+..+ +.++||||+||++|||++|+.||.+.... ......... .
T Consensus 171 ---~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~~-----~~~~~i~~~--------~-- 232 (476)
T 2y94_A 171 ---FLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHVP-----TLFKKICDG--------I-- 232 (476)
T ss_dssp ---CBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSSSH-----HHHHHHHTT--------C--
T ss_pred ---cccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCCHH-----HHHHHHhcC--------C--
Confidence 2234579999999999888765 68999999999999999999999763211 111111000 0
Q ss_pred hhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 649 REEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 649 ~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
...+..++..+.+++.+||+.||++|||+.|+++
T Consensus 233 -----~~~p~~~s~~~~~Li~~~L~~dP~~Rpt~~eil~ 266 (476)
T 2y94_A 233 -----FYTPQYLNPSVISLLKHMLQVDPMKRATIKDIRE 266 (476)
T ss_dssp -----CCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred -----cCCCccCCHHHHHHHHHHcCCCchhCcCHHHHHh
Confidence 0011123456889999999999999999999976
No 141
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=100.00 E-value=4.3e-40 Score=343.99 Aligned_cols=246 Identities=27% Similarity=0.323 Sum_probs=199.7
Q ss_pred CCCCccccccccCceEEEEEEE-CCCCEEEEEEeeccc---hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEE
Q 005278 415 NGFNECNLLGTGSFGSVYKGTL-FDGTNVAIKVFNLQL---ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVL 490 (704)
Q Consensus 415 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 490 (704)
+.|+..+.||+|+||.||+|+. .+++.||||++.... ....+.+.+|++++++++||||+++++++...+..++||
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 133 (348)
T 1u5q_A 54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM 133 (348)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEEE
Confidence 4588889999999999999985 579999999987542 233457889999999999999999999999999999999
Q ss_pred eccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCCC
Q 005278 491 EFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGDD 570 (704)
Q Consensus 491 e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~~ 570 (704)
||++ |++.+++......+++..+..++.|++.||+|||. .+|+||||||+||+++.++.+||+|||++......
T Consensus 134 e~~~-g~l~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~-- 207 (348)
T 1u5q_A 134 EYCL-GSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHS---HNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA-- 207 (348)
T ss_dssp ECCS-EEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSB--
T ss_pred ecCC-CCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCCHHHEEECCCCCEEEeeccCceecCCC--
Confidence 9997 68999887666679999999999999999999954 68999999999999999999999999999865432
Q ss_pred cceeccccccccccCCcccC---CCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccc
Q 005278 571 SVIQTMTIATIGYMAPEYGS---EGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANL 647 (704)
Q Consensus 571 ~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (704)
....||+.|+|||++. ...++.++|||||||++|||++|+.||....... .+........+. .
T Consensus 208 ----~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~-~~~~~~~~~~~~---------~ 273 (348)
T 1u5q_A 208 ----NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMS-ALYHIAQNESPA---------L 273 (348)
T ss_dssp ----CCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH-HHHHHHHSCCCC---------C
T ss_pred ----CcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHH-HHHHHHhcCCCC---------C
Confidence 2346999999999873 5678999999999999999999999986532111 111111110000 0
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 005278 648 VREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAK 688 (704)
Q Consensus 648 ~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~ 688 (704)
....++..+.+++..||+.||++|||+.|+++.
T Consensus 274 --------~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~h 306 (348)
T 1u5q_A 274 --------QSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKH 306 (348)
T ss_dssp --------CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHTTC
T ss_pred --------CCCCCCHHHHHHHHHHcccChhhCcCHHHHhhC
Confidence 011234567889999999999999999999753
No 142
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=9.6e-40 Score=344.42 Aligned_cols=209 Identities=27% Similarity=0.318 Sum_probs=181.2
Q ss_pred ccccchHHHHHHhCCCCccccccccCceEEEEEEE-CCCCEEEEEEeeccchhhhHHHHHHHHHHHhcC-----CCCCce
Q 005278 402 WRRTSYLDIQRATNGFNECNLLGTGSFGSVYKGTL-FDGTNVAIKVFNLQLERASRSFDSECEILRSIR-----HRNLIK 475 (704)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-----h~niv~ 475 (704)
...+++.+.....++|.+.+.||+|+||+||+|+. .+++.||||++... ....+.+..|+.+++.++ ||||++
T Consensus 22 ~~~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~h~~iv~ 100 (360)
T 3llt_A 22 IVHFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNI-KKYTRSAKIEADILKKIQNDDINNNNIVK 100 (360)
T ss_dssp GGSCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC-HHHHHHHHHHHHHHHHTCCCSTTGGGBCC
T ss_pred ceeeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccc-hhhhhhhHHHHHHHHHhcccCCCCCCeec
Confidence 44455555556678999999999999999999996 46899999998643 334566788999999996 999999
Q ss_pred EEeeeeeCCeEEEEEeccCCCCHHHHHhhCC-CccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCC----
Q 005278 476 IISNCCNIDFKALVLEFMPNGSLEKWLYSHN-YFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDE---- 550 (704)
Q Consensus 476 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~---- 550 (704)
+++++...+..++||||+ +++|.+++.... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.
T Consensus 101 ~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~ 176 (360)
T 3llt_A 101 YHGKFMYYDHMCLIFEPL-GPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLR---KMSLTHTDLKPENILLDDPYFE 176 (360)
T ss_dssp EEEEEEETTEEEEEECCC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCTTCC
T ss_pred ccceeeECCeeEEEEcCC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCcccEEEcccccc
Confidence 999999999999999999 899999998653 45899999999999999999995 578999999999999975
Q ss_pred ---------------------CCcEEEeeeccceecCCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHH
Q 005278 551 ---------------------NMTAHVSDFGISKLLGEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLME 609 (704)
Q Consensus 551 ---------------------~~~~kl~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~e 609 (704)
++.+||+|||+++..... .....||+.|+|||++.+..++.++|||||||++||
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~e 251 (360)
T 3llt_A 177 KSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDY-----HGSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAE 251 (360)
T ss_dssp EEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSC-----CCSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHH
T ss_pred ccccchhcccccccccccccCCCCEEEEeccCceecCCC-----CcCccCcccccCcHHHcCCCCCCccchHHHHHHHHH
Confidence 789999999999875432 234568999999999999999999999999999999
Q ss_pred HhhCCCCCCcc
Q 005278 610 TFTRKKPTNEI 620 (704)
Q Consensus 610 l~tg~~p~~~~ 620 (704)
|++|+.||...
T Consensus 252 ll~g~~pf~~~ 262 (360)
T 3llt_A 252 LYTGSLLFRTH 262 (360)
T ss_dssp HHHSSCSCCCS
T ss_pred HHHCCCCCCCC
Confidence 99999999763
No 143
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=100.00 E-value=7.4e-40 Score=341.94 Aligned_cols=244 Identities=20% Similarity=0.240 Sum_probs=198.9
Q ss_pred HhCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccc---hhhhHHHHHHHHHHHhc-CCCCCceEEeeeeeCCeEE
Q 005278 413 ATNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL---ERASRSFDSECEILRSI-RHRNLIKIISNCCNIDFKA 487 (704)
Q Consensus 413 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~ 487 (704)
..++|+..+.||+|+||.||+|+.. +++.||||++.... ....+.+..|..++..+ +||+|+++++++.+.+..+
T Consensus 18 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~ 97 (353)
T 2i0e_A 18 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY 97 (353)
T ss_dssp -CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEE
T ss_pred chHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEE
Confidence 4578999999999999999999975 48899999997643 23345688899999988 8999999999999999999
Q ss_pred EEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCC
Q 005278 488 LVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGE 567 (704)
Q Consensus 488 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~ 567 (704)
+||||+++|+|.+++...+ .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++....
T Consensus 98 lv~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~ 173 (353)
T 2i0e_A 98 FVMEYVNGGDLMYHIQQVG-RFKEPHAVFYAAEIAIGLFFLQ---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIW 173 (353)
T ss_dssp EEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCC
T ss_pred EEEeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCEEeccCCHHHEEEcCCCcEEEEeCCccccccc
Confidence 9999999999999998654 3899999999999999999995 46899999999999999999999999999986432
Q ss_pred CCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccc
Q 005278 568 GDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANL 647 (704)
Q Consensus 568 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (704)
.. .......||+.|+|||++.+..++.++|||||||++|||++|+.||.+... .......... .
T Consensus 174 ~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~-----~~~~~~i~~~--------~- 237 (353)
T 2i0e_A 174 DG--VTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDE-----DELFQSIMEH--------N- 237 (353)
T ss_dssp TT--CCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHHHHC--------C-
T ss_pred CC--cccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCCH-----HHHHHHHHhC--------C-
Confidence 22 123445799999999999999999999999999999999999999976321 1111110000 0
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCH
Q 005278 648 VREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSM 682 (704)
Q Consensus 648 ~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~ 682 (704)
...+...+.++.+++.+||+.||++||++
T Consensus 238 ------~~~p~~~s~~~~~li~~lL~~dP~~R~~~ 266 (353)
T 2i0e_A 238 ------VAYPKSMSKEAVAICKGLMTKHPGKRLGC 266 (353)
T ss_dssp ------CCCCTTSCHHHHHHHHHHTCSCTTSCTTC
T ss_pred ------CCCCCCCCHHHHHHHHHHhhcCHHHcCCC
Confidence 01112345678899999999999999964
No 144
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=100.00 E-value=7.7e-40 Score=337.19 Aligned_cols=264 Identities=20% Similarity=0.248 Sum_probs=200.4
Q ss_pred HhCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccch---hhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEE
Q 005278 413 ATNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQLE---RASRSFDSECEILRSIRHRNLIKIISNCCNIDFKAL 488 (704)
Q Consensus 413 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 488 (704)
..++|...+.||+|+||.||+|+.. +++.||+|++..... ...+.+.+|+.++++++||||+++++++...+..++
T Consensus 32 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~l 111 (309)
T 2h34_A 32 QFGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYV 111 (309)
T ss_dssp --CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEE
T ss_pred EeccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEE
Confidence 3578999999999999999999965 689999999875432 234678999999999999999999999999999999
Q ss_pred EEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCC
Q 005278 489 VLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEG 568 (704)
Q Consensus 489 v~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~ 568 (704)
||||+++++|.+++.... .+++..+..++.|++.|++||| +.+|+||||||+||+++.++.+||+|||++......
T Consensus 112 v~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~ 187 (309)
T 2h34_A 112 DMRLINGVDLAAMLRRQG-PLAPPRAVAIVRQIGSALDAAH---AAGATHRDVKPENILVSADDFAYLVDFGIASATTDE 187 (309)
T ss_dssp EEECCCCEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECSCCC-------
T ss_pred EEEecCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCcCCcCCCChHHEEEcCCCCEEEecCccCcccccc
Confidence 999999999999998653 4899999999999999999995 468999999999999999999999999999876443
Q ss_pred CCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccch
Q 005278 569 DDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLV 648 (704)
Q Consensus 569 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (704)
.. .......|++.|+|||++.+..++.++||||||+++|||++|+.||...... ..........+.
T Consensus 188 ~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--~~~~~~~~~~~~----------- 253 (309)
T 2h34_A 188 KL-TQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQLS--VMGAHINQAIPR----------- 253 (309)
T ss_dssp ----------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCHHH--HHHHHHHSCCCC-----------
T ss_pred cc-ccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCchHH--HHHHHhccCCCC-----------
Confidence 21 1223456899999999999999999999999999999999999999763221 111111110000
Q ss_pred hhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCC-CHHHHHHHHHHhHHHhhh
Q 005278 649 REEQAFSVKIDCLLSIMHLALDCCMESPEQRV-SMKDAAAKLKKIKEKFLD 698 (704)
Q Consensus 649 ~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rp-t~~ev~~~L~~~~~~~~~ 698 (704)
....+..++..+.+++.+||+.||++|| +++++++.|+++.+....
T Consensus 254 ----~~~~~~~~~~~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l~~~~~ 300 (309)
T 2h34_A 254 ----PSTVRPGIPVAFDAVIARGMAKNPEDRYVTCGDLSAAAHAALATADQ 300 (309)
T ss_dssp ----GGGTSTTCCTHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHTCC----
T ss_pred ----ccccCCCCCHHHHHHHHHhccCCHHHHHHhHHHHHHHHHHHHHhhcc
Confidence 0011223456788999999999999999 999999999987554433
No 145
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=6.2e-40 Score=332.17 Aligned_cols=245 Identities=25% Similarity=0.402 Sum_probs=179.8
Q ss_pred CCCCccccccccCceEEEEEEE-CCCCEEEEEEeeccc---hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEE
Q 005278 415 NGFNECNLLGTGSFGSVYKGTL-FDGTNVAIKVFNLQL---ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVL 490 (704)
Q Consensus 415 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 490 (704)
++|++.+.||+|+||.||+|+. .+++.||+|++.... ....+.+.+|+++++.++||||+++++++.+.+..++||
T Consensus 13 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 92 (275)
T 2eue_A 13 GNYQIVKTLGEGSFAKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI 92 (275)
T ss_dssp CCBCCCC---------EEEEECTTTCCEEEEEEECSCC-----CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSCEEEEE
T ss_pred cceEEEEEEEcCCCEEEEEEEECCCCCEEEEEEEEhhhcchHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCeEEEEe
Confidence 5899999999999999999985 478999999987543 233567899999999999999999999999999999999
Q ss_pred eccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCCC
Q 005278 491 EFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGDD 570 (704)
Q Consensus 491 e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~~ 570 (704)
||+ ++++.+++.... .+++..+..++.|++.|++||| +.+|+||||||+||+++.++.+||+|||++........
T Consensus 93 e~~-~~~l~~~~~~~~-~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~ 167 (275)
T 2eue_A 93 EYA-GNELFDYIVQRD-KMSEQEARRFFQQIISAVEYCH---RHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNF 167 (275)
T ss_dssp ECC-CEEHHHHHHTSS-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTSCEEECCSSCC--------
T ss_pred hhc-CCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCCeeccCChHhEEECCCCCEEEeecccceeccCccc
Confidence 999 678888887654 4899999999999999999995 46899999999999999999999999999987644321
Q ss_pred cceeccccccccccCCcccCCCCC-CcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccchh
Q 005278 571 SVIQTMTIATIGYMAPEYGSEGII-SPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLVR 649 (704)
Q Consensus 571 ~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (704)
.....||+.|+|||.+.+..+ +.++||||+|+++|||++|+.||..... ..........
T Consensus 168 ---~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~-----~~~~~~~~~~------------ 227 (275)
T 2eue_A 168 ---LKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESI-----PVLFKNISNG------------ 227 (275)
T ss_dssp ----------CTTCCHHHHCC-----THHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHHHHT------------
T ss_pred ---ccCCCCCcCcCCceeeeCCCCCCcccchHHHHHHHHHHHhCCCCCCCCCH-----HHHHHHHHhC------------
Confidence 233468999999999887765 7899999999999999999999976321 1111110000
Q ss_pred hhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 650 EEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 650 ~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
....+..++..+.+++.+|++.||++|||+.|+++
T Consensus 228 ---~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~ 262 (275)
T 2eue_A 228 ---VYTLPKFLSPGAAGLIKRMLIVNPLNRISIHEIMQ 262 (275)
T ss_dssp ---CCCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred ---CCCCCccCCHHHHHHHHHHhhcCHhHCCCHHHHhh
Confidence 00111234566889999999999999999999954
No 146
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=100.00 E-value=4.4e-39 Score=327.63 Aligned_cols=251 Identities=21% Similarity=0.309 Sum_probs=203.4
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccc--hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEE
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL--ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVL 490 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 490 (704)
.++|+..+.||+|+||.||+|... +++.||+|++.... ....+.+.+|+.++++++||||+++++++...+..++||
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~ 84 (284)
T 3kk8_A 5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF 84 (284)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEE
Confidence 478999999999999999999865 68999999987543 234467889999999999999999999999999999999
Q ss_pred eccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCc---EEEeeeccceecCC
Q 005278 491 EFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMT---AHVSDFGISKLLGE 567 (704)
Q Consensus 491 e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~---~kl~Dfgla~~~~~ 567 (704)
||+++|+|.+++.... .+++..+..++.|++.|++||| +.+|+||||||+||+++.++. +||+|||++.....
T Consensus 85 e~~~~~~l~~~~~~~~-~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~~ 160 (284)
T 3kk8_A 85 DLVTGGELFEDIVARE-FYSEADASHCIQQILESIAYCH---SNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVND 160 (284)
T ss_dssp CCCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEESSSSTTCCEEECCCTTCEECCS
T ss_pred ecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEccc
Confidence 9999999999887653 4899999999999999999995 468999999999999986655 99999999987654
Q ss_pred CCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccc
Q 005278 568 GDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANL 647 (704)
Q Consensus 568 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (704)
... .....||+.|+|||++.+..++.++||||+|+++|+|++|+.||...... .............
T Consensus 161 ~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~--~~~~~~~~~~~~~--------- 226 (284)
T 3kk8_A 161 SEA---WHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQH--RLYAQIKAGAYDY--------- 226 (284)
T ss_dssp SCB---CCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHTCCCC---------
T ss_pred Ccc---ccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCchh--HHHHHHHhccccC---------
Confidence 322 23456999999999999999999999999999999999999999653211 1111111100000
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 648 VREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 648 ~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
.......++..+.+++.+|++.||++||++.|+++
T Consensus 227 -----~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 261 (284)
T 3kk8_A 227 -----PSPEWDTVTPEAKSLIDSMLTVNPKKRITADQALK 261 (284)
T ss_dssp -----CTTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred -----CchhhcccCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 00011234567889999999999999999999965
No 147
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.4e-39 Score=334.11 Aligned_cols=265 Identities=21% Similarity=0.229 Sum_probs=198.3
Q ss_pred CCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccc--hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEEe
Q 005278 415 NGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL--ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVLE 491 (704)
Q Consensus 415 ~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 491 (704)
++|+..+.||+|+||+||+|+.. +|+.||||++.... ....+.+.+|++++++++||||+++++++.+.+..++|||
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 82 (311)
T 4agu_A 3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFE 82 (311)
T ss_dssp CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEEE
Confidence 57899999999999999999975 58999999986543 2335668899999999999999999999999999999999
Q ss_pred ccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCCCc
Q 005278 492 FMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGDDS 571 (704)
Q Consensus 492 ~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~~~ 571 (704)
|+++++|.+++... ..+++..+..++.|++.|++||| +.+|+||||||+||+++.++.+||+|||++........
T Consensus 83 ~~~~~~l~~~~~~~-~~~~~~~~~~i~~~l~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~- 157 (311)
T 4agu_A 83 YCDHTVLHELDRYQ-RGVPEHLVKSITWQTLQAVNFCH---KHNCIHRDVKPENILITKHSVIKLCDFGFARLLTGPSD- 157 (311)
T ss_dssp CCSEEHHHHHHHTS-SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECC-----
T ss_pred eCCCchHHHHHhhh-cCCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCCChhhEEEcCCCCEEEeeCCCchhccCccc-
Confidence 99999999887654 34899999999999999999995 46899999999999999999999999999987653322
Q ss_pred ceeccccccccccCCcccCC-CCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCC------------
Q 005278 572 VIQTMTIATIGYMAPEYGSE-GIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDG------------ 638 (704)
Q Consensus 572 ~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~------------ 638 (704)
......||+.|+|||++.+ ..++.++||||+|+++|||++|+.||.+....+. ...+.......
T Consensus 158 -~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 234 (311)
T 4agu_A 158 -YYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQ--LYLIRKTLGDLIPRHQQVFSTNQ 234 (311)
T ss_dssp ---------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH--HHHHHHHHCSCCHHHHHHHHTCG
T ss_pred -ccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHH--HHHHHHHhccccccccccccccc
Confidence 2234578999999998865 6789999999999999999999999976432211 11111110000
Q ss_pred -cchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 639 -LTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 639 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
......+..............++..+.+++.+||+.||++|||++|+++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 284 (311)
T 4agu_A 235 YFSGVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQLLH 284 (311)
T ss_dssp GGTTCCCCCCSSCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHT
T ss_pred ccccCcCCCccccchhhhhcccccHHHHHHHHHHccCChhhcCCHHHHhc
Confidence 0000000000000000111234667889999999999999999999965
No 148
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=100.00 E-value=1.4e-40 Score=343.22 Aligned_cols=259 Identities=21% Similarity=0.334 Sum_probs=195.4
Q ss_pred hCCCCccccccccCceEEEEEEE-CCCCEEEEEEeeccch---hhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCe----
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTL-FDGTNVAIKVFNLQLE---RASRSFDSECEILRSIRHRNLIKIISNCCNIDF---- 485 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~---- 485 (704)
.++|+..+.||+|+||.||+|+. .+++.||||++..... .....+.+|+.++++++||||+++++++.....
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~ 90 (311)
T 3ork_A 11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL 90 (311)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEE
T ss_pred cCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcc
Confidence 46899999999999999999995 5789999999976432 234578899999999999999999999876543
Q ss_pred EEEEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceec
Q 005278 486 KALVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLL 565 (704)
Q Consensus 486 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~ 565 (704)
.++||||+++|+|.+++...+ .+++..++.++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.+
T Consensus 91 ~~lv~e~~~g~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~~ 166 (311)
T 3ork_A 91 PYIVMEYVDGVTLRDIVHTEG-PMTPKRAIEVIADACQALNFSH---QNGIIHRDVKPANIMISATNAVKVMDFGIARAI 166 (311)
T ss_dssp EEEEEECCCEEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEETTSCEEECCCSCC---
T ss_pred cEEEEecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCCCcCCCCHHHEEEcCCCCEEEeeccCcccc
Confidence 489999999999999998654 4899999999999999999995 468999999999999999999999999999876
Q ss_pred CCCCCc-ceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhcc
Q 005278 566 GEGDDS-VIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVD 644 (704)
Q Consensus 566 ~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (704)
...... .......||+.|+|||++.+..++.++||||||+++|||++|+.||.+....... ..... ..
T Consensus 167 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~-~~~~~----~~------ 235 (311)
T 3ork_A 167 ADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVA-YQHVR----ED------ 235 (311)
T ss_dssp ---------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHH-HHHHH----CC------
T ss_pred cccccccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHH-HHHhc----CC------
Confidence 543222 2223456899999999999999999999999999999999999999763221110 01100 00
Q ss_pred ccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHH-HHHHHHh
Q 005278 645 ANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDA-AAKLKKI 692 (704)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev-~~~L~~~ 692 (704)
.. ........++..+.+++.+||+.||++||++.++ ...+.+.
T Consensus 236 --~~---~~~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~ 279 (311)
T 3ork_A 236 --PI---PPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRV 279 (311)
T ss_dssp --CC---CHHHHSTTCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHH
T ss_pred --CC---CcccccCCCCHHHHHHHHHHHhcCHhhChhhHHHHHHHHHHH
Confidence 00 0011112345678899999999999999976655 4444443
No 149
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=2.3e-39 Score=333.78 Aligned_cols=267 Identities=25% Similarity=0.318 Sum_probs=199.8
Q ss_pred HhCCCCccccccccCceEEEEEEE-CCCCEEEEEEeeccch-----hhhHHHHHHHHHHHhcC---CCCCceEEeeeeeC
Q 005278 413 ATNGFNECNLLGTGSFGSVYKGTL-FDGTNVAIKVFNLQLE-----RASRSFDSECEILRSIR---HRNLIKIISNCCNI 483 (704)
Q Consensus 413 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~-----~~~~~~~~e~~~l~~l~---h~niv~l~~~~~~~ 483 (704)
..++|+..+.||+|+||+||+|+. .+++.||||++..... .....+.+|++++++++ ||||+++++++...
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~ 86 (308)
T 3g33_A 7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS 86 (308)
T ss_dssp ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence 467999999999999999999995 5789999999874321 12346677888777764 99999999999775
Q ss_pred C-----eEEEEEeccCCCCHHHHHhhCC-CccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEe
Q 005278 484 D-----FKALVLEFMPNGSLEKWLYSHN-YFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVS 557 (704)
Q Consensus 484 ~-----~~~lv~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~ 557 (704)
. ..++||||+. |+|.+++.... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+
T Consensus 87 ~~~~~~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~Nil~~~~~~~kl~ 162 (308)
T 3g33_A 87 RTDREIKVTLVFEHVD-QDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLH---ANCIVHRDLKPENILVTSGGTVKLA 162 (308)
T ss_dssp CSSSEEEEEEEEECCC-CBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCTTTEEECTTSCEEEC
T ss_pred CCCCceeEEEEehhhh-cCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEcCCCCEEEe
Confidence 5 5789999997 59999998654 34899999999999999999995 4679999999999999999999999
Q ss_pred eeccceecCCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhc-C
Q 005278 558 DFGISKLLGEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESL-P 636 (704)
Q Consensus 558 Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~-~ 636 (704)
|||+++...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||.+....+ .+........ +
T Consensus 163 Dfg~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~-~~~~i~~~~~~~ 238 (308)
T 3g33_A 163 DFGLARIYSYQM---ALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEAD-QLGKIFDLIGLP 238 (308)
T ss_dssp SCSCTTTSTTCC---CSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSHHH-HHHHHHHHHCCC
T ss_pred eCccccccCCCc---ccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHHhCCC
Confidence 999998664322 2344578999999999999999999999999999999999999997632221 1112111110 0
Q ss_pred -C-Ccchhcc---ccchhh--hhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 637 -D-GLTEVVD---ANLVRE--EQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 637 -~-~~~~~~~---~~~~~~--~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
. .+..... ..+... ........+++..+.+++.+|++.||++|||+.|+++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 296 (308)
T 3g33_A 239 PEDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQ 296 (308)
T ss_dssp CTTTSCSSCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred ChhhccchhhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhc
Confidence 0 0100000 000000 0001112234567889999999999999999999964
No 150
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=100.00 E-value=8.2e-40 Score=338.48 Aligned_cols=264 Identities=21% Similarity=0.247 Sum_probs=197.3
Q ss_pred hCCCCcc-ccccccCceEEEEEEE-CCCCEEEEEEeeccchhhhHHHHHHHHHHHhc-CCCCCceEEeeeeeCCeEEEEE
Q 005278 414 TNGFNEC-NLLGTGSFGSVYKGTL-FDGTNVAIKVFNLQLERASRSFDSECEILRSI-RHRNLIKIISNCCNIDFKALVL 490 (704)
Q Consensus 414 ~~~~~~~-~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ 490 (704)
.+.|.+. +.||+|+||.||+|+. .+++.||||++..........+.+|++++.++ +||||+++++++.+.+..++||
T Consensus 11 ~~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~ 90 (316)
T 2ac3_A 11 EDVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVF 90 (316)
T ss_dssp TTSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred ceeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEE
Confidence 3567774 7899999999999985 47999999999766555567889999999995 7999999999999999999999
Q ss_pred eccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCc---EEEeeeccceecCC
Q 005278 491 EFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMT---AHVSDFGISKLLGE 567 (704)
Q Consensus 491 e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~---~kl~Dfgla~~~~~ 567 (704)
||+++|+|.+++.... .+++..+..++.|++.||+|||. .+|+||||||+||+++.++. +||+|||++.....
T Consensus 91 e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~~ 166 (316)
T 2ac3_A 91 EKMRGGSILSHIHKRR-HFNELEASVVVQDVASALDFLHN---KGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKL 166 (316)
T ss_dssp ECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEESCSSSSCSEEECCTTCCC----
T ss_pred EcCCCCcHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHh---CCceeCCCCHHHEEEccCCCcCceEEEEccCcccccc
Confidence 9999999999998653 48999999999999999999964 68999999999999998776 99999999986542
Q ss_pred CCC-----cceeccccccccccCCcccCC-----CCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCC
Q 005278 568 GDD-----SVIQTMTIATIGYMAPEYGSE-----GIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPD 637 (704)
Q Consensus 568 ~~~-----~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~ 637 (704)
... ........||+.|+|||++.+ ..++.++|||||||++|||++|+.||......+..+... ....
T Consensus 167 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~---~~~~ 243 (316)
T 2ac3_A 167 NGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRG---EACP 243 (316)
T ss_dssp ---------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC-------CCH
T ss_pred CCccccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCccccccccccccc---ccch
Confidence 211 111223469999999998865 568899999999999999999999997643322110000 0000
Q ss_pred ----C-cchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 638 ----G-LTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 638 ----~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
. ...+....... .......++..+.+++.+||+.||++||++.|+++
T Consensus 244 ~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 295 (316)
T 2ac3_A 244 ACQNMLFESIQEGKYEF---PDKDWAHISCAAKDLISKLLVRDAKQRLSAAQVLQ 295 (316)
T ss_dssp HHHHHHHHHHHHCCCCC---CHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred hHHHHHHHHHhccCccc---CchhcccCCHHHHHHHHHHhhCChhhCCCHHHHhc
Confidence 0 00000000000 00011234567889999999999999999999975
No 151
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=100.00 E-value=4.5e-40 Score=341.23 Aligned_cols=266 Identities=20% Similarity=0.272 Sum_probs=197.6
Q ss_pred CCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccchh-hhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEEec
Q 005278 415 NGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQLER-ASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVLEF 492 (704)
Q Consensus 415 ~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~-~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 492 (704)
++|...+.||+|+||+||+|+.. +++.||||++...... ....+.+|++++++++||||+++++++.+.+..++||||
T Consensus 2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 81 (324)
T 3mtl_A 2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEY 81 (324)
T ss_dssp CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEecc
Confidence 57889999999999999999965 7899999998654321 222456799999999999999999999999999999999
Q ss_pred cCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCCCcc
Q 005278 493 MPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGDDSV 572 (704)
Q Consensus 493 ~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~~~~ 572 (704)
++ |+|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++...... .
T Consensus 82 ~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~--~ 155 (324)
T 3mtl_A 82 LD-KDLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCH---RQKVLHRDLKPQNLLINERGELKLADFGLARAKSIPT--K 155 (324)
T ss_dssp CS-EEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEEESSCCGGGEEECTTCCEEECSSSEEECC-------
T ss_pred cc-cCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCcCHHHEEECCCCCEEEccCcccccccCCc--c
Confidence 97 5999999887777999999999999999999995 5789999999999999999999999999998654322 2
Q ss_pred eeccccccccccCCcccCC-CCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhc---CCCcchhccccch
Q 005278 573 IQTMTIATIGYMAPEYGSE-GIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESL---PDGLTEVVDANLV 648 (704)
Q Consensus 573 ~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 648 (704)
......||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+....+ .+........ +..+.........
T Consensus 156 ~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~ 234 (324)
T 3mtl_A 156 TYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEE-QLHFIFRILGTPTEETWPGILSNEEF 234 (324)
T ss_dssp -------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCCCCTTTSTTGGGCHHH
T ss_pred ccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHHhCCCChHhchhhhcchhh
Confidence 2334568999999998876 568999999999999999999999997632211 1111111111 0111111110000
Q ss_pred --------hhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 649 --------REEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 649 --------~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
...........++..+.+++.+|++.||++|||++|+++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 281 (324)
T 3mtl_A 235 KTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMK 281 (324)
T ss_dssp HHTCCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred cccccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhc
Confidence 000001122234567889999999999999999999964
No 152
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=100.00 E-value=7.1e-40 Score=334.60 Aligned_cols=262 Identities=24% Similarity=0.376 Sum_probs=207.3
Q ss_pred hCCCCccc-cccccCceEEEEEEE---CCCCEEEEEEeeccc--hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEE
Q 005278 414 TNGFNECN-LLGTGSFGSVYKGTL---FDGTNVAIKVFNLQL--ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKA 487 (704)
Q Consensus 414 ~~~~~~~~-~ig~G~~g~V~~~~~---~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~ 487 (704)
.++|...+ .||+|+||.||+|.. .+++.||||++.... ....+.+.+|+++++.++||||+++++++ ..+..+
T Consensus 15 ~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~~~~~~ 93 (291)
T 1xbb_A 15 RKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-EAESWM 93 (291)
T ss_dssp GGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-ESSSEE
T ss_pred chhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-CCCCcE
Confidence 35677777 999999999999964 246889999987543 22356799999999999999999999999 566789
Q ss_pred EEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCC
Q 005278 488 LVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGE 567 (704)
Q Consensus 488 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~ 567 (704)
+||||+++|+|.+++.... .+++..++.++.|++.|++||| +.+|+||||||+||+++.++.+||+|||++.....
T Consensus 94 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~ 169 (291)
T 1xbb_A 94 LVMEMAELGPLNKYLQQNR-HVKDKNIIELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRA 169 (291)
T ss_dssp EEEECCTTEEHHHHHHHCT-TCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCCTTCEECCT
T ss_pred EEEEeCCCCCHHHHHHhCc-CCCHHHHHHHHHHHHHHHHHHH---hCCeEcCCCCcceEEEeCCCcEEEccCCcceeecc
Confidence 9999999999999998654 4899999999999999999995 46899999999999999999999999999988754
Q ss_pred CCCcc-eeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhh-CCCCCCccccccccHHHHHHhhcCCCcchhccc
Q 005278 568 GDDSV-IQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFT-RKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDA 645 (704)
Q Consensus 568 ~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (704)
..... ......+++.|+|||.+.+..++.++||||||+++|||++ |+.||...... .....+.....
T Consensus 170 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~--~~~~~~~~~~~--------- 238 (291)
T 1xbb_A 170 DENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS--EVTAMLEKGER--------- 238 (291)
T ss_dssp TCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHH--HHHHHHHTTCC---------
T ss_pred CCCcccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCHH--HHHHHHHcCCC---------
Confidence 43221 1223356789999999988889999999999999999999 99999763221 11111111100
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHHhhhh
Q 005278 646 NLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEKFLDD 699 (704)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~~~ 699 (704)
...+..++..+.+++..||+.||++||++.|+++.|+++-..-...
T Consensus 239 --------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~~~~ 284 (291)
T 1xbb_A 239 --------MGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYDVVNE 284 (291)
T ss_dssp --------CCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHHHHHH
T ss_pred --------CCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHHhhc
Confidence 0112244567889999999999999999999999999986655443
No 153
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=100.00 E-value=4e-40 Score=345.94 Aligned_cols=266 Identities=12% Similarity=0.103 Sum_probs=208.2
Q ss_pred hCCCCccccccccCceEEEEEEECC---------CCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCCCce---------
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLFD---------GTNVAIKVFNLQLERASRSFDSECEILRSIRHRNLIK--------- 475 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~~---------~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~--------- 475 (704)
.++|...+.||+|+||.||+|+... ++.||||++... +.+.+|++++++++||||++
T Consensus 41 ~~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-----~~~~~E~~~l~~l~h~niv~~~~~~~~~~ 115 (352)
T 2jii_A 41 GRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-----GRLFNEQNFFQRAAKPLQVNKWKKLYSTP 115 (352)
T ss_dssp SCEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-----STHHHHHHHHHHHCCHHHHHHHHHHTTCT
T ss_pred CCeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-----chHHHHHHHHHHhcccchhhhhhhhccCC
Confidence 3689999999999999999998653 789999998643 46889999999999999987
Q ss_pred ------EEeeeee-CCeEEEEEeccCCCCHHHHHhhC-CCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCee
Q 005278 476 ------IISNCCN-IDFKALVLEFMPNGSLEKWLYSH-NYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNIL 547 (704)
Q Consensus 476 ------l~~~~~~-~~~~~lv~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil 547 (704)
+++++.. ....++||||+ +|+|.+++... ...+++..+..++.|++.||+|||. .+|+||||||+||+
T Consensus 116 ~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dikp~NIl 191 (352)
T 2jii_A 116 LLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLHE---NEYVHGNVTAENIF 191 (352)
T ss_dssp TCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHH---TTCBCSCCCGGGEE
T ss_pred ccCccchhhccccCCcEEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCCHHHEE
Confidence 5677765 67889999999 99999999865 4569999999999999999999954 68999999999999
Q ss_pred eCCCC--cEEEeeeccceecCCCCCc-----ceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCcc
Q 005278 548 LDENM--TAHVSDFGISKLLGEGDDS-----VIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEI 620 (704)
Q Consensus 548 ~~~~~--~~kl~Dfgla~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~ 620 (704)
++.++ .+||+|||+++.+...... .......||+.|+|||++.+..++.++|||||||++|||++|+.||...
T Consensus 192 ~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~ 271 (352)
T 2jii_A 192 VDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTNC 271 (352)
T ss_dssp EETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGG
T ss_pred EcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCcccC
Confidence 99998 9999999999876432211 1123347999999999999999999999999999999999999999875
Q ss_pred ccccccHHHHHHhhcCCCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHHhh
Q 005278 621 FIGEMSLKHWVKESLPDGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEKFL 697 (704)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~ 697 (704)
................ ......+.. .....++..+.+++..||+.||++||++.|+++.|+++.++..
T Consensus 272 ~~~~~~~~~~~~~~~~-~~~~~~~~~--------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~~ 339 (352)
T 2jii_A 272 LPNTEDIMKQKQKFVD-KPGPFVGPC--------GHWIRPSETLQKYLKVVMALTYEEKPPYAMLRNNLEALLQDLR 339 (352)
T ss_dssp TTCHHHHHHHHHHHHH-SCCCEECTT--------SCEECCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHhccC-Chhhhhhhc--------cccCCCcHHHHHHHHHHHhCChhhCCCHHHHHHHHHHHHHhcC
Confidence 4222222222211100 000000000 0011234678899999999999999999999999999987654
No 154
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=1.4e-39 Score=346.35 Aligned_cols=270 Identities=23% Similarity=0.281 Sum_probs=192.7
Q ss_pred HHhCCCCccccccccCceEEEEEEE-CCCCEEEEEEeeccc--hhhhHHHHHHHHHHHhcC-CCCCceEEeeeeeCC--e
Q 005278 412 RATNGFNECNLLGTGSFGSVYKGTL-FDGTNVAIKVFNLQL--ERASRSFDSECEILRSIR-HRNLIKIISNCCNID--F 485 (704)
Q Consensus 412 ~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~--~ 485 (704)
...++|+..+.||+|+||.||+|.. .+|+.||||++.... ......+.+|+.+++++. ||||+++++++...+ .
T Consensus 6 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~ 85 (388)
T 3oz6_A 6 HVLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRD 85 (388)
T ss_dssp HHHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSC
T ss_pred cccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCE
Confidence 4567899999999999999999985 479999999986432 344567889999999997 999999999997544 6
Q ss_pred EEEEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceec
Q 005278 486 KALVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLL 565 (704)
Q Consensus 486 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~ 565 (704)
.++||||++ |+|.+++... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+|+.+
T Consensus 86 ~~lv~e~~~-~~L~~~~~~~--~~~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~ 159 (388)
T 3oz6_A 86 VYLVFDYME-TDLHAVIRAN--ILEPVHKQYVVYQLIKVIKYLH---SGGLLHRDMKPSNILLNAECHVKVADFGLSRSF 159 (388)
T ss_dssp EEEEEECCS-EEHHHHHHHT--CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEES
T ss_pred EEEEecccC-cCHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHH---hCCEEeCCCCHHHeEEcCCCCEEecCCcccccc
Confidence 899999997 6999999764 4889999999999999999995 578999999999999999999999999999876
Q ss_pred CCCC-------------------CcceeccccccccccCCcccCC-CCCCcccceeeHHHHHHHHhhCCCCCCccccccc
Q 005278 566 GEGD-------------------DSVIQTMTIATIGYMAPEYGSE-GIISPKSDVYSYGILLMETFTRKKPTNEIFIGEM 625 (704)
Q Consensus 566 ~~~~-------------------~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~ 625 (704)
.... .........||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+.... .
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~-~ 238 (388)
T 3oz6_A 160 VNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGSSTM-N 238 (388)
T ss_dssp SSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH-H
T ss_pred cccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCCHH-H
Confidence 4311 1112234579999999998876 67899999999999999999999999763221 1
Q ss_pred cHHHHHHhhcCCCcchh--ccccch--------------------------hhhhhhhhhHHHHHHHHHHHhhhcCCCCC
Q 005278 626 SLKHWVKESLPDGLTEV--VDANLV--------------------------REEQAFSVKIDCLLSIMHLALDCCMESPE 677 (704)
Q Consensus 626 ~~~~~~~~~~~~~~~~~--~~~~~~--------------------------~~~~~~~~~~~~~~~l~~l~~~cl~~~P~ 677 (704)
.+.......-....... +..... ...........++..+.+++.+||+.||+
T Consensus 239 ~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~ 318 (388)
T 3oz6_A 239 QLERIIGVIDFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFTKWKNLLLKINPKADCNEEALDLLDKLLQFNPN 318 (388)
T ss_dssp HHHHHHHHHCCCCHHHHHTSCCSSHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHCTTCCCCHHHHHHHHHHCCSSGG
T ss_pred HHHHHHHhcCCCCHHHHHhccCHHHHHHHHhCcccccccCCCHHHhCcchhhhcccccccccCCHHHHHHHHHhhccCcc
Confidence 11111111000000000 000000 00000001113456789999999999999
Q ss_pred CCCCHHHHHHH
Q 005278 678 QRVSMKDAAAK 688 (704)
Q Consensus 678 ~Rpt~~ev~~~ 688 (704)
+|||++|+++.
T Consensus 319 ~R~t~~e~l~H 329 (388)
T 3oz6_A 319 KRISANDALKH 329 (388)
T ss_dssp GSCCHHHHTTS
T ss_pred cCCCHHHHhCC
Confidence 99999999653
No 155
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.5e-40 Score=341.65 Aligned_cols=243 Identities=24% Similarity=0.320 Sum_probs=201.8
Q ss_pred HhCCCCccccccccCceEEEEEEE-CCCCEEEEEEeeccch--------hhhHHHHHHHHHHHhcCCCCCceEEeeeeeC
Q 005278 413 ATNGFNECNLLGTGSFGSVYKGTL-FDGTNVAIKVFNLQLE--------RASRSFDSECEILRSIRHRNLIKIISNCCNI 483 (704)
Q Consensus 413 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~--------~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~ 483 (704)
..++|+..+.||+|+||.||+|+. .+++.||||++..... .....+.+|+.++++++||||+++++++.+.
T Consensus 22 ~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~ 101 (335)
T 3dls_A 22 YSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQ 101 (335)
T ss_dssp HHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECS
T ss_pred cccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeC
Confidence 456899999999999999999985 4789999999875431 1234577899999999999999999999999
Q ss_pred CeEEEEEeccCCC-CHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccc
Q 005278 484 DFKALVLEFMPNG-SLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGIS 562 (704)
Q Consensus 484 ~~~~lv~e~~~~g-sL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla 562 (704)
+..++||||+.+| +|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++
T Consensus 102 ~~~~lv~e~~~~g~~l~~~~~~~~-~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~a 177 (335)
T 3dls_A 102 GFFQLVMEKHGSGLDLFAFIDRHP-RLDEPLASYIFRQLVSAVGYLR---LKDIIHRDIKDENIVIAEDFTIKLIDFGSA 177 (335)
T ss_dssp SEEEEEEECCTTSCBHHHHHHTCC-CCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTC
T ss_pred CEEEEEEEeCCCCccHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---hCCeEEeccCHHHEEEcCCCcEEEeecccc
Confidence 9999999999777 9999997654 4899999999999999999995 468999999999999999999999999999
Q ss_pred eecCCCCCcceeccccccccccCCcccCCCCC-CcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcch
Q 005278 563 KLLGEGDDSVIQTMTIATIGYMAPEYGSEGII-SPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTE 641 (704)
Q Consensus 563 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (704)
........ .....||+.|+|||++.+..+ +.++|||||||++|||++|+.||......
T Consensus 178 ~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~------------------ 236 (335)
T 3dls_A 178 AYLERGKL---FYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEET------------------ 236 (335)
T ss_dssp EECCTTCC---BCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGGG------------------
T ss_pred eECCCCCc---eeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHHH------------------
Confidence 88754332 234569999999999888776 88999999999999999999999753210
Q ss_pred hccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 005278 642 VVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAK 688 (704)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~ 688 (704)
..... ..+..++..+.+++..||+.||++||++.|+++.
T Consensus 237 -~~~~~-------~~~~~~~~~l~~li~~~L~~dP~~Rps~~ell~h 275 (335)
T 3dls_A 237 -VEAAI-------HPPYLVSKELMSLVSGLLQPVPERRTTLEKLVTD 275 (335)
T ss_dssp -TTTCC-------CCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHHC
T ss_pred -Hhhcc-------CCCcccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 00000 0111234568899999999999999999999763
No 156
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=100.00 E-value=2.3e-39 Score=335.63 Aligned_cols=251 Identities=20% Similarity=0.277 Sum_probs=204.3
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccchh------hhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeE
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQLER------ASRSFDSECEILRSIRHRNLIKIISNCCNIDFK 486 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~------~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~ 486 (704)
.++|+..+.||+|+||.||+|+.. +|+.||||++...... ..+.+.+|+.++++++||||+++++++.+.+..
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 90 (321)
T 2a2a_A 11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDV 90 (321)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred hccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEE
Confidence 457889999999999999999965 6899999998754321 356799999999999999999999999999999
Q ss_pred EEEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCC----cEEEeeeccc
Q 005278 487 ALVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENM----TAHVSDFGIS 562 (704)
Q Consensus 487 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~----~~kl~Dfgla 562 (704)
++||||+++|+|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++ .+||+|||++
T Consensus 91 ~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~lH---~~~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~~ 166 (321)
T 2a2a_A 91 VLILELVSGGELFDFLAQKE-SLSEEEATSFIKQILDGVNYLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLA 166 (321)
T ss_dssp EEEECCCCSCBHHHHHHTCS-CEEHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESCTTSSSCCEEECCCTTC
T ss_pred EEEEEcCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCChHHEEEecCCCCcCCEEEccCccc
Confidence 99999999999999997643 4899999999999999999995 46899999999999999888 7999999999
Q ss_pred eecCCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchh
Q 005278 563 KLLGEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEV 642 (704)
Q Consensus 563 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (704)
........ .....||+.|+|||++.+..++.++||||||+++|||++|+.||.+... ............
T Consensus 167 ~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~-----~~~~~~i~~~~~--- 235 (321)
T 2a2a_A 167 HEIEDGVE---FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK-----QETLANITSVSY--- 235 (321)
T ss_dssp EECCTTCC---CCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSH-----HHHHHHHHTTCC---
T ss_pred eecCcccc---ccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCCH-----HHHHHHHHhccc---
Confidence 87754322 2344689999999999999999999999999999999999999975321 111111000000
Q ss_pred ccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 643 VDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
.. .......++..+.+++.+||+.||++||++.|+++
T Consensus 236 ---~~-----~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~ 272 (321)
T 2a2a_A 236 ---DF-----DEEFFSHTSELAKDFIRKLLVKETRKRLTIQEALR 272 (321)
T ss_dssp ---CC-----CHHHHTTCCHHHHHHHHTTSCSSTTTSCCHHHHHH
T ss_pred ---cc-----ChhhhcccCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 00 00111234567889999999999999999999976
No 157
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=100.00 E-value=7.2e-40 Score=333.41 Aligned_cols=252 Identities=23% Similarity=0.340 Sum_probs=204.9
Q ss_pred HhCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCCCceEEeeeee---------
Q 005278 413 ATNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQLERASRSFDSECEILRSIRHRNLIKIISNCCN--------- 482 (704)
Q Consensus 413 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~--------- 482 (704)
...+|+..+.||+|+||.||+|+.. +++.||+|++.... +.+.+|++++++++||||+++++++..
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~ 84 (284)
T 2a19_B 9 FGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN----EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSS 84 (284)
T ss_dssp HHHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS----GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC-----
T ss_pred hccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc----HHHHHHHHHHHhCCCCCEEEEeeeEeccccCccccc
Confidence 4467899999999999999999975 79999999987542 457789999999999999999998854
Q ss_pred -------CCeEEEEEeccCCCCHHHHHhhC-CCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcE
Q 005278 483 -------IDFKALVLEFMPNGSLEKWLYSH-NYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTA 554 (704)
Q Consensus 483 -------~~~~~lv~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~ 554 (704)
....++||||+++|+|.+++... ...+++..++.++.|++.|++||| +.+|+||||||+||+++.++.+
T Consensus 85 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~ 161 (284)
T 2a19_B 85 KNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIH---SKKLINRDLKPSNIFLVDTKQV 161 (284)
T ss_dssp ----CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEE
T ss_pred ccccccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeccCCHHHEEEcCCCCE
Confidence 44578999999999999999754 356899999999999999999996 4689999999999999999999
Q ss_pred EEeeeccceecCCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhh
Q 005278 555 HVSDFGISKLLGEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKES 634 (704)
Q Consensus 555 kl~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~ 634 (704)
||+|||++........ .....||+.|+|||++.+..++.++||||||+++|||++|..|+.... .+....
T Consensus 162 kl~Dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~-------~~~~~~ 231 (284)
T 2a19_B 162 KIGDFGLVTSLKNDGK---RTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFETS-------KFFTDL 231 (284)
T ss_dssp EECCCTTCEESSCCSC---CCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHHH-------HHHHHH
T ss_pred EECcchhheecccccc---ccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhHH-------HHHHHh
Confidence 9999999987754322 233468999999999999899999999999999999999998874311 111111
Q ss_pred cCCCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHHhhh
Q 005278 635 LPDGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEKFLD 698 (704)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~~ 698 (704)
....+ +..++..+.+++.+||+.||++||++.|+++.|+.+++....
T Consensus 232 ~~~~~-----------------~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~~~~~~ 278 (284)
T 2a19_B 232 RDGII-----------------SDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWKKSPEK 278 (284)
T ss_dssp HTTCC-----------------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHTC----
T ss_pred hcccc-----------------cccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhhCCCc
Confidence 00000 112345677899999999999999999999999998765443
No 158
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=100.00 E-value=4.4e-39 Score=333.52 Aligned_cols=247 Identities=21% Similarity=0.250 Sum_probs=179.3
Q ss_pred cccccccCceEEEEEEEC-CCCEEEEEEeeccchhhhHHHHHHHHHHHhcC-CCCCceEEeeeeeCCeEEEEEeccCCCC
Q 005278 420 CNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQLERASRSFDSECEILRSIR-HRNLIKIISNCCNIDFKALVLEFMPNGS 497 (704)
Q Consensus 420 ~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e~~~~gs 497 (704)
.+.||+|+||.||+|+.. +++.||||++... ....+.+|+.+++.+. ||||+++++++.+....++||||+++|+
T Consensus 16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~~ 92 (325)
T 3kn6_A 16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKR---MEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGE 92 (325)
T ss_dssp SCCSEEETTEEEEEEEETTTCCEEEEEEEEGG---GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCB
T ss_pred CCccccCCCeEEEEEEECCCCCEEEEEEEChh---hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCCc
Confidence 378999999999999965 6899999998643 3456788999999997 9999999999999999999999999999
Q ss_pred HHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCC---cEEEeeeccceecCCCCCccee
Q 005278 498 LEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENM---TAHVSDFGISKLLGEGDDSVIQ 574 (704)
Q Consensus 498 L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~---~~kl~Dfgla~~~~~~~~~~~~ 574 (704)
|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++ .+||+|||+++....... ..
T Consensus 93 L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~--~~ 166 (325)
T 3kn6_A 93 LFERIKKKK-HFSETEASYIMRKLVSAVSHMH---DVGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQ--PL 166 (325)
T ss_dssp HHHHHHHCS-CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEC----CEEEECCCTTCEECCC-------
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCCeecCCCHHHEEEecCCCcccEEEeccccceecCCCCC--cc
Confidence 999998754 4899999999999999999995 47899999999999997665 899999999987644322 23
Q ss_pred ccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCcccccc--ccHHHHHHhhcCCCcchhccccchhhhh
Q 005278 575 TMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGE--MSLKHWVKESLPDGLTEVVDANLVREEQ 652 (704)
Q Consensus 575 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (704)
....||+.|+|||++.+..++.++|||||||++|||++|+.||....... .............. .. .
T Consensus 167 ~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~i~~~~--------~~---~ 235 (325)
T 3kn6_A 167 KTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIKKGD--------FS---F 235 (325)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHHHHTTTC--------CC---C
T ss_pred cccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHHHHHcCC--------CC---C
Confidence 34568999999999999999999999999999999999999997643211 11111111111100 00 0
Q ss_pred hhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHH
Q 005278 653 AFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAA 686 (704)
Q Consensus 653 ~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~ 686 (704)
.......++.++.+++..||+.||++||+++|++
T Consensus 236 ~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell 269 (325)
T 3kn6_A 236 EGEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLR 269 (325)
T ss_dssp CSHHHHTSCHHHHHHHHHHHCCCTTTCCCTTTST
T ss_pred CcccccCCCHHHHHHHHHHCCCChhHCCCHHHHh
Confidence 0111224567789999999999999999999985
No 159
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=100.00 E-value=9e-40 Score=332.64 Aligned_cols=249 Identities=26% Similarity=0.301 Sum_probs=195.7
Q ss_pred CCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccch-hhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEEec
Q 005278 415 NGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQLE-RASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVLEF 492 (704)
Q Consensus 415 ~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 492 (704)
++|...+.||+|+||.||+|+.. ++..||+|++..... ...+.+.+|++++++++||||+++++++.+....++||||
T Consensus 22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~ 101 (285)
T 3is5_A 22 DLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVMET 101 (285)
T ss_dssp HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred hheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEEe
Confidence 57888999999999999999864 689999999876542 3457799999999999999999999999999999999999
Q ss_pred cCCCCHHHHHhhC---CCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeee---CCCCcEEEeeeccceecC
Q 005278 493 MPNGSLEKWLYSH---NYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILL---DENMTAHVSDFGISKLLG 566 (704)
Q Consensus 493 ~~~gsL~~~l~~~---~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~---~~~~~~kl~Dfgla~~~~ 566 (704)
+++|+|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||++ +.++.+||+|||++....
T Consensus 102 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~~ 178 (285)
T 3is5_A 102 CEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFH---SQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFK 178 (285)
T ss_dssp CSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC--
T ss_pred CCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHH---hCCEEECCCCHHHEEEecCCCCCCEEEEeeecceecC
Confidence 9999999998642 456899999999999999999995 4789999999999999 456789999999998764
Q ss_pred CCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhcccc
Q 005278 567 EGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDAN 646 (704)
Q Consensus 567 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (704)
... ......||+.|+|||++. +.++.++||||||+++|||++|+.||.+....+ .........+.
T Consensus 179 ~~~---~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~~~~~~--~~~~~~~~~~~--------- 243 (285)
T 3is5_A 179 SDE---HSTNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGTSLEE--VQQKATYKEPN--------- 243 (285)
T ss_dssp -----------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH--HHHHHHHCCCC---------
T ss_pred Ccc---cCcCcccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCCCCHHH--HHhhhccCCcc---------
Confidence 322 223456899999999875 468899999999999999999999997632211 11111110000
Q ss_pred chhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 647 LVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 647 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
... .....+..+.+++.+||+.||++||++.|+++
T Consensus 244 ~~~------~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 278 (285)
T 3is5_A 244 YAV------ECRPLTPQAVDLLKQMLTKDPERRPSAAQVLH 278 (285)
T ss_dssp CCC--------CCCCHHHHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred ccc------ccCcCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 000 00112456788999999999999999999964
No 160
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=100.00 E-value=6.9e-40 Score=340.62 Aligned_cols=259 Identities=28% Similarity=0.464 Sum_probs=206.1
Q ss_pred CCCCccccccccCceEEEEEEEC-CCCEE--EEEEeeccc-hhhhHHHHHHHHHHHhc-CCCCCceEEeeeeeCCeEEEE
Q 005278 415 NGFNECNLLGTGSFGSVYKGTLF-DGTNV--AIKVFNLQL-ERASRSFDSECEILRSI-RHRNLIKIISNCCNIDFKALV 489 (704)
Q Consensus 415 ~~~~~~~~ig~G~~g~V~~~~~~-~~~~v--avK~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv 489 (704)
++|...+.||+|+||.||+|+.. ++..+ |+|.+.... ....+.+.+|+++++++ +||||+++++++.+.+..++|
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv 104 (327)
T 1fvr_A 25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA 104 (327)
T ss_dssp GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEE
T ss_pred HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEEE
Confidence 57888999999999999999854 56644 999887533 33456789999999999 899999999999999999999
Q ss_pred EeccCCCCHHHHHhhCC---------------CccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcE
Q 005278 490 LEFMPNGSLEKWLYSHN---------------YFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTA 554 (704)
Q Consensus 490 ~e~~~~gsL~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~ 554 (704)
|||+++|+|.+++.... ..+++..++.++.|++.||+||| +.+|+||||||+||+++.++.+
T Consensus 105 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIl~~~~~~~ 181 (327)
T 1fvr_A 105 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS---QKQFIHRDLAARNILVGENYVA 181 (327)
T ss_dssp ECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECGGGCE
T ss_pred EecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCccceEEEcCCCeE
Confidence 99999999999998643 46899999999999999999995 5789999999999999999999
Q ss_pred EEeeeccceecCCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhh-CCCCCCccccccccHHHHHHh
Q 005278 555 HVSDFGISKLLGEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFT-RKKPTNEIFIGEMSLKHWVKE 633 (704)
Q Consensus 555 kl~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~ 633 (704)
||+|||+++.... ........+++.|+|||++.+..++.++||||||+++|||+| |+.||.+... ......
T Consensus 182 kL~Dfg~~~~~~~---~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~-----~~~~~~ 253 (327)
T 1fvr_A 182 KIADFGLSRGQEV---YVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTC-----AELYEK 253 (327)
T ss_dssp EECCTTCEESSCE---ECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCH-----HHHHHH
T ss_pred EEcccCcCccccc---cccccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCcH-----HHHHHH
Confidence 9999999974322 112233457889999999988889999999999999999998 9999976321 111111
Q ss_pred hcCCCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHHhhh
Q 005278 634 SLPDGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEKFLD 698 (704)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~~ 698 (704)
. .... ....+..++..+.+++.+||+.||++||++.|+++.|+++.++...
T Consensus 254 ~-~~~~-------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~~ 304 (327)
T 1fvr_A 254 L-PQGY-------------RLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEERKT 304 (327)
T ss_dssp G-GGTC-------------CCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSSSC
T ss_pred h-hcCC-------------CCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhhcC
Confidence 1 1100 0011223456788999999999999999999999999998776543
No 161
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=100.00 E-value=3.7e-40 Score=334.40 Aligned_cols=253 Identities=29% Similarity=0.431 Sum_probs=200.2
Q ss_pred hCCCCccccccccCceEEEEEEECCCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCCCceEEeeeeeC-CeEEEEEec
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLFDGTNVAIKVFNLQLERASRSFDSECEILRSIRHRNLIKIISNCCNI-DFKALVLEF 492 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~-~~~~lv~e~ 492 (704)
.++|+..+.||+|+||.||+|+.. |+.||||++... ...+.+.+|++++++++||||+++++++.+. +..++||||
T Consensus 20 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~--~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~ 96 (278)
T 1byg_A 20 MKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKND--ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEY 96 (278)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEET-TEEEEEEECCCC--C--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECC
T ss_pred hhhceEEeEEecCCCceEEEEEEc-CCEEEEEEecch--hHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEEec
Confidence 467889999999999999999864 889999998654 2456789999999999999999999997554 478999999
Q ss_pred cCCCCHHHHHhhCC-CccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCCCc
Q 005278 493 MPNGSLEKWLYSHN-YFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGDDS 571 (704)
Q Consensus 493 ~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~~~ 571 (704)
+++|+|.+++.... ..+++..+..++.|++.|++||| +.+|+||||||+||+++.++.+||+|||++......
T Consensus 97 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~--- 170 (278)
T 1byg_A 97 MAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST--- 170 (278)
T ss_dssp CTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTSCEEECCCCC----------
T ss_pred CCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHH---hCCccccCCCcceEEEeCCCcEEEeecccccccccc---
Confidence 99999999998543 23788999999999999999995 468999999999999999999999999999865332
Q ss_pred ceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhh-CCCCCCccccccccHHHHHHhhcCCCcchhccccchhh
Q 005278 572 VIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFT-RKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLVRE 650 (704)
Q Consensus 572 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (704)
.....+++.|+|||.+.+..++.++||||||+++|||+| |+.||...... .....+....
T Consensus 171 --~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~--~~~~~~~~~~--------------- 231 (278)
T 1byg_A 171 --QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLK--DVVPRVEKGY--------------- 231 (278)
T ss_dssp -------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGG--GHHHHHTTTC---------------
T ss_pred --ccCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHHHhcCC---------------
Confidence 123357889999999988899999999999999999998 99999763221 1111111000
Q ss_pred hhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHHh
Q 005278 651 EQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEKF 696 (704)
Q Consensus 651 ~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~~ 696 (704)
....+..++..+.+++.+||+.||++||++.|+++.|++++...
T Consensus 232 --~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~i~~~~ 275 (278)
T 1byg_A 232 --KMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHIKTHE 275 (278)
T ss_dssp --CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred --CCCCcccCCHHHHHHHHHHhcCChhhCCCHHHHHHHHHHHHhhh
Confidence 01112234567889999999999999999999999999998754
No 162
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.5e-38 Score=345.65 Aligned_cols=307 Identities=23% Similarity=0.252 Sum_probs=284.6
Q ss_pred CCCCCEEecCCCcCcccCCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccCCCC
Q 005278 5 LPNLKYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTNC 84 (704)
Q Consensus 5 l~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~l 84 (704)
.++++.|+|++|++++..+..|.++++|++|+|++|.++++.|.+|.++++|++|+|++|.++.++... |.++
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-------~~~l 103 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGV-------FTGL 103 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTS-------STTC
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCccc-------ccCC
Confidence 468999999999999888899999999999999999999999999999999999999999999877554 8899
Q ss_pred CCCcEEEccCCCCcccCChhhhhcccccceEEecCCcccccCChhhhcCCCCCEEEccCCcCccccChhhcCCCCcCeee
Q 005278 85 RNLTVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNGTIPTAVGRLRRLQGLY 164 (704)
Q Consensus 85 ~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 164 (704)
++|++|+|++|++....+..|..+. +|++|++++|.+.+..+..|.++++|++|+|++|.+++..+..|.++++|+.|+
T Consensus 104 ~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 182 (477)
T 2id5_A 104 SNLTKLDISENKIVILLDYMFQDLY-NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLR 182 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCT-TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEE
T ss_pred CCCCEEECCCCccccCChhHccccc-cCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEe
Confidence 9999999999999988888888774 799999999999999999999999999999999999987778899999999999
Q ss_pred ccCcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCcccCC
Q 005278 165 LHGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLNG 244 (704)
Q Consensus 165 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 244 (704)
|++|.+++..+..+..+++|++|++++|.+.+.++.......+|+.|++++|.++...+..+..+++|+.|+|++|.+.+
T Consensus 183 l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 262 (477)
T 2id5_A 183 LRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST 262 (477)
T ss_dssp EESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCc
Confidence 99999998888899999999999999999887887777777899999999999996655789999999999999999998
Q ss_pred CCCcccccCcCCcEEEeecCccCCCCCCCcCCCCCcceeeccCceeeccCCcccccccccceEEecccCCCCCCC
Q 005278 245 SLPSNIQNLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSLADNQFQGPVPKSFGSLISLESLDLSRNNLSGEIP 319 (704)
Q Consensus 245 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 319 (704)
..+..|..+++|+.|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++.+..+
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 263 IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred cChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence 888889999999999999999998889999999999999999999998777888999999999999999987544
No 163
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=100.00 E-value=2.5e-39 Score=354.26 Aligned_cols=250 Identities=25% Similarity=0.345 Sum_probs=205.1
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccc---hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEE
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL---ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALV 489 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 489 (704)
.++|...+.||+|+||.||+|+.. +|+.||||++.... ......+.+|+++++.++||||+++++++.+.+..++|
T Consensus 183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV 262 (576)
T 2acx_A 183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLV 262 (576)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEE
Confidence 467899999999999999999965 79999999997543 22345688999999999999999999999999999999
Q ss_pred EeccCCCCHHHHHhhCC-CccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCC
Q 005278 490 LEFMPNGSLEKWLYSHN-YFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEG 568 (704)
Q Consensus 490 ~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~ 568 (704)
|||+++|+|.+++.... ..+++..+..++.||+.||+|||. .+|+||||||+||+++.++.+||+|||+++.....
T Consensus 263 mEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH~---~gIvHrDLKPeNILld~~g~vKL~DFGla~~~~~~ 339 (576)
T 2acx_A 263 LTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHR---ERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEG 339 (576)
T ss_dssp ECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred EEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHH---CCEeccCCchheEEEeCCCCeEEEecccceecccC
Confidence 99999999999998643 358999999999999999999954 68999999999999999999999999999887543
Q ss_pred CCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccc--cHHHHHHhhcCCCcchhcccc
Q 005278 569 DDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEM--SLKHWVKESLPDGLTEVVDAN 646 (704)
Q Consensus 569 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 646 (704)
.. .....||+.|+|||++.+..++.++|||||||++|||++|+.||........ .+...+.. .+.
T Consensus 340 ~~---~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~~~~~i~~~i~~-~~~--------- 406 (576)
T 2acx_A 340 QT---IKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKE-VPE--------- 406 (576)
T ss_dssp CC---EECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCCCHHHHHHHHHH-CCC---------
T ss_pred cc---ccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccchhHHHHHHHhhc-ccc---------
Confidence 22 2345799999999999998999999999999999999999999976432111 11111110 000
Q ss_pred chhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCC-----CHHHHHH
Q 005278 647 LVREEQAFSVKIDCLLSIMHLALDCCMESPEQRV-----SMKDAAA 687 (704)
Q Consensus 647 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rp-----t~~ev~~ 687 (704)
..+..++..+.+++.+||+.||++|| +++||++
T Consensus 407 --------~~p~~~s~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~ 444 (576)
T 2acx_A 407 --------EYSERFSPQARSLCSQLLCKDPAERLGCRGGSAREVKE 444 (576)
T ss_dssp --------CCCTTSCHHHHHHHHHHTCSSGGGSTTCSSSHHHHHHT
T ss_pred --------cCCccCCHHHHHHHHHhccCCHHHcCCCCCCCHHHHHh
Confidence 01123456788999999999999999 6788854
No 164
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=100.00 E-value=9e-40 Score=367.04 Aligned_cols=253 Identities=25% Similarity=0.389 Sum_probs=200.9
Q ss_pred ccccccCceEEEEEEEC---CCCEEEEEEeeccch--hhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEEeccCC
Q 005278 421 NLLGTGSFGSVYKGTLF---DGTNVAIKVFNLQLE--RASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVLEFMPN 495 (704)
Q Consensus 421 ~~ig~G~~g~V~~~~~~---~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~ 495 (704)
+.||+|+||.||+|.+. .++.||||+++.... ...+.+.+|++++++++||||+++++++.. +..++||||+++
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-~~~~lv~E~~~~ 453 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAEL 453 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEEEECCTT
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-CCEEEEEEccCC
Confidence 47999999999999653 467899999976432 335789999999999999999999999865 457899999999
Q ss_pred CCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCCCc-cee
Q 005278 496 GSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGDDS-VIQ 574 (704)
Q Consensus 496 gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~~~-~~~ 574 (704)
|+|.+++.... .+++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+++.+...... ...
T Consensus 454 g~L~~~l~~~~-~l~~~~~~~i~~qi~~~L~yLH---~~~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~ 529 (635)
T 4fl3_A 454 GPLNKYLQQNR-HVKDKNIIELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQ 529 (635)
T ss_dssp EEHHHHHHHCT-TCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC--------
T ss_pred CCHHHHHhhCC-CCCHHHHHHHHHHHHHHHHHHH---HCCEeCCCCChHhEEEeCCCCEEEEEcCCccccccCccccccc
Confidence 99999997654 4899999999999999999995 468999999999999999999999999999877543321 222
Q ss_pred ccccccccccCCcccCCCCCCcccceeeHHHHHHHHhh-CCCCCCccccccccHHHHHHhhcCCCcchhccccchhhhhh
Q 005278 575 TMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFT-RKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLVREEQA 653 (704)
Q Consensus 575 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (704)
....+|+.|+|||++.+..++.++|||||||++|||++ |+.||.+.... .....+.... .
T Consensus 530 ~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~--~~~~~i~~~~-----------------~ 590 (635)
T 4fl3_A 530 THGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS--EVTAMLEKGE-----------------R 590 (635)
T ss_dssp -----CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHH--HHHHHHHTTC-----------------C
T ss_pred cCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHHHHcCC-----------------C
Confidence 33457889999999999999999999999999999998 99999764321 1111111110 1
Q ss_pred hhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHHhh
Q 005278 654 FSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEKFL 697 (704)
Q Consensus 654 ~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~ 697 (704)
...+..++.++.+++..||+.||++||++.+|++.|+++..+..
T Consensus 591 ~~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~l~ 634 (635)
T 4fl3_A 591 MGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYDVV 634 (635)
T ss_dssp CCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHHhc
Confidence 11223456788999999999999999999999999998876543
No 165
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=100.00 E-value=6.7e-40 Score=344.67 Aligned_cols=249 Identities=24% Similarity=0.287 Sum_probs=192.7
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccch---hhhHHHHHHHHH-HHhcCCCCCceEEeeeeeCCeEEE
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQLE---RASRSFDSECEI-LRSIRHRNLIKIISNCCNIDFKAL 488 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~e~~~-l~~l~h~niv~l~~~~~~~~~~~l 488 (704)
.++|+..+.||+|+||.||+|+.. +++.||||++..... .....+..|..+ ++.++||||+++++++.+.+..++
T Consensus 37 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~l 116 (373)
T 2r5t_A 37 PSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYF 116 (373)
T ss_dssp GGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEE
T ss_pred hhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEE
Confidence 357899999999999999999965 588999999976532 233455666666 567899999999999999999999
Q ss_pred EEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCC
Q 005278 489 VLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEG 568 (704)
Q Consensus 489 v~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~ 568 (704)
||||+++|+|.+++...+ .+++..+..++.|++.||+||| +.+|+||||||+||+++.++++||+|||+++.....
T Consensus 117 v~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g~ikL~DFG~a~~~~~~ 192 (373)
T 2r5t_A 117 VLDYINGGELFYHLQRER-CFLEPRARFYAAEIASALGYLH---SLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEH 192 (373)
T ss_dssp EEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCCBCGGGBCC
T ss_pred EEeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEECCCCCEEEeeCccccccccC
Confidence 999999999999998654 3788899999999999999995 578999999999999999999999999999864322
Q ss_pred CCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccch
Q 005278 569 DDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLV 648 (704)
Q Consensus 569 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (704)
. .......||+.|+|||++.+..++.++|+|||||++|||++|..||.+....+ .+...... ..
T Consensus 193 ~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~-~~~~i~~~------------~~- 256 (373)
T 2r5t_A 193 N--STTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAE-MYDNILNK------------PL- 256 (373)
T ss_dssp C--CCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSBHHH-HHHHHHHS------------CC-
T ss_pred C--CccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCHHH-HHHHHHhc------------cc-
Confidence 2 12345579999999999999999999999999999999999999997632111 11111110 00
Q ss_pred hhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 005278 649 REEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAK 688 (704)
Q Consensus 649 ~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~ 688 (704)
..+..++..+.+++.+||+.||++||++.+..+.
T Consensus 257 ------~~~~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~ 290 (373)
T 2r5t_A 257 ------QLKPNITNSARHLLEGLLQKDRTKRLGAKDDFME 290 (373)
T ss_dssp ------CCCSSSCHHHHHHHHHHTCSSGGGSTTTTTTHHH
T ss_pred ------CCCCCCCHHHHHHHHHHcccCHHhCCCCCCCHHH
Confidence 0111234567889999999999999998654433
No 166
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=100.00 E-value=2.3e-40 Score=365.89 Aligned_cols=257 Identities=27% Similarity=0.438 Sum_probs=209.1
Q ss_pred HhCCCCccccccccCceEEEEEEECCCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEEec
Q 005278 413 ATNGFNECNLLGTGSFGSVYKGTLFDGTNVAIKVFNLQLERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVLEF 492 (704)
Q Consensus 413 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 492 (704)
..++|...+.||+|+||.||+|++.++..||||+++... ...+.+.+|++++++++||||+++++++.+ +..++||||
T Consensus 265 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~lv~e~ 342 (535)
T 2h8h_A 265 PRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEY 342 (535)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECC
T ss_pred chhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEee-ccceEeeeh
Confidence 456788889999999999999999888889999997543 235679999999999999999999999876 668999999
Q ss_pred cCCCCHHHHHhhC-CCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCCCc
Q 005278 493 MPNGSLEKWLYSH-NYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGDDS 571 (704)
Q Consensus 493 ~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~~~ 571 (704)
+++|+|.+++... ...+++..++.++.|++.||+||| +.+|+||||||+|||++.++.+||+|||+++...... .
T Consensus 343 ~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~-~ 418 (535)
T 2h8h_A 343 MSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNE-Y 418 (535)
T ss_dssp CTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCTTSTTTCCCHH-H
T ss_pred hcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCCHhhEEEcCCCcEEEcccccceecCCCc-e
Confidence 9999999999753 345899999999999999999995 4789999999999999999999999999998664321 1
Q ss_pred ceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhh-CCCCCCccccccccHHHHHHhhcCCCcchhccccchhh
Q 005278 572 VIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFT-RKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLVRE 650 (704)
Q Consensus 572 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (704)
.......++..|+|||++.+..++.++|||||||++|||+| |+.||.+....+ ....+...
T Consensus 419 ~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~~~--~~~~i~~~---------------- 480 (535)
T 2h8h_A 419 TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNRE--VLDQVERG---------------- 480 (535)
T ss_dssp HTTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCHHH--HHHHHHTT----------------
T ss_pred ecccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH--HHHHHHcC----------------
Confidence 11223356789999999988899999999999999999999 999997632211 11111100
Q ss_pred hhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHH
Q 005278 651 EQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKE 694 (704)
Q Consensus 651 ~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~ 694 (704)
.....+..++..+.+++.+||+.||++||++.+|++.|+++..
T Consensus 481 -~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~L~~~~~ 523 (535)
T 2h8h_A 481 -YRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFT 523 (535)
T ss_dssp -CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSC
T ss_pred -CCCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHhh
Confidence 0011123456778899999999999999999999999988743
No 167
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=100.00 E-value=4.1e-39 Score=327.66 Aligned_cols=258 Identities=22% Similarity=0.291 Sum_probs=204.7
Q ss_pred CCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccch------hhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEE
Q 005278 415 NGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQLE------RASRSFDSECEILRSIRHRNLIKIISNCCNIDFKA 487 (704)
Q Consensus 415 ~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~------~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~ 487 (704)
++|+..+.||+|+||.||+|+.. +++.||+|++..... ...+.+.+|++++++++||||+++++++.+....+
T Consensus 5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~ 84 (283)
T 3bhy_A 5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVV 84 (283)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeEE
Confidence 46888999999999999999975 699999999875431 13567999999999999999999999999999999
Q ss_pred EEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCC----cEEEeeeccce
Q 005278 488 LVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENM----TAHVSDFGISK 563 (704)
Q Consensus 488 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~----~~kl~Dfgla~ 563 (704)
+||||+++++|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++ .+||+|||++.
T Consensus 85 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~~ 160 (283)
T 3bhy_A 85 LILELVSGGELFDFLAEKE-SLTEDEATQFLKQILDGVHYLH---SKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAH 160 (283)
T ss_dssp EEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCSSSSSCCEEECCCTTCE
T ss_pred EEEeecCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCChHHEEEecCCCCCCceEEEecccce
Confidence 9999999999999997543 4899999999999999999995 46899999999999999877 89999999998
Q ss_pred ecCCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhc
Q 005278 564 LLGEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVV 643 (704)
Q Consensus 564 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (704)
....... .....|++.|+|||++.+..++.++||||||+++|||++|+.||...... ..........
T Consensus 161 ~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~-----~~~~~~~~~~----- 227 (283)
T 3bhy_A 161 KIEAGNE---FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQ-----ETLTNISAVN----- 227 (283)
T ss_dssp ECC-----------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSHH-----HHHHHHHTTC-----
T ss_pred eccCCCc---ccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcchH-----HHHHHhHhcc-----
Confidence 7644321 23446899999999999999999999999999999999999999763211 1111100000
Q ss_pred cccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH--HHHHhHHH
Q 005278 644 DANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA--KLKKIKEK 695 (704)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~--~L~~~~~~ 695 (704)
... .......++..+.+++.+||+.||++||++.|+++ .+++++..
T Consensus 228 -~~~-----~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~~~~ 275 (283)
T 3bhy_A 228 -YDF-----DEEYFSNTSELAKDFIRRLLVKDPKRRMTIAQSLEHSWIKAIRRR 275 (283)
T ss_dssp -CCC-----CHHHHTTCCHHHHHHHHTTSCSSGGGSCCHHHHHHCHHHHHHHHC
T ss_pred -cCC-----cchhcccCCHHHHHHHHHHccCCHhHCcCHHHHHhCHHHHHHHHH
Confidence 000 00111234567889999999999999999999987 45555443
No 168
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=100.00 E-value=5.5e-40 Score=355.87 Aligned_cols=249 Identities=22% Similarity=0.246 Sum_probs=194.5
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccc---hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEE
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL---ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALV 489 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 489 (704)
.++|+..+.||+|+||.||+|+.. +|+.||||++.... ......+.+|+.+++.++||||+++++++...+..++|
T Consensus 147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv 226 (446)
T 4ejn_A 147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFV 226 (446)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEEE
T ss_pred hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEE
Confidence 467999999999999999999854 68999999997542 22345678899999999999999999999999999999
Q ss_pred EeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCC
Q 005278 490 LEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGD 569 (704)
Q Consensus 490 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~ 569 (704)
|||+++|+|.+++.... .+++..+..++.|++.||+|||. ..+|+||||||+||+++.++.+||+|||+|+......
T Consensus 227 ~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH~--~~giiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~ 303 (446)
T 4ejn_A 227 MEYANGGELFFHLSRER-VFSEDRARFYGAEIVSALDYLHS--EKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDG 303 (446)
T ss_dssp ECCCSSCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHHH--HTCCCCCCCCGGGEEECSSSCEEECCCCCCCTTCC--
T ss_pred EeeCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHhh--cCCEEECCCCHHHEEECCCCCEEEccCCCceeccCCC
Confidence 99999999999997654 48999999999999999999964 2689999999999999999999999999998643222
Q ss_pred CcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccchh
Q 005278 570 DSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLVR 649 (704)
Q Consensus 570 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (704)
.......||+.|+|||++.+..++.++|||||||++|||++|+.||..... ...........
T Consensus 304 --~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~-----~~~~~~i~~~~----------- 365 (446)
T 4ejn_A 304 --ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH-----EKLFELILMEE----------- 365 (446)
T ss_dssp -----CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHHHHCC-----------
T ss_pred --cccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCCH-----HHHHHHHHhCC-----------
Confidence 223446799999999999999999999999999999999999999965321 11111100000
Q ss_pred hhhhhhhhHHHHHHHHHHHhhhcCCCCCCCC-----CHHHHHH
Q 005278 650 EEQAFSVKIDCLLSIMHLALDCCMESPEQRV-----SMKDAAA 687 (704)
Q Consensus 650 ~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rp-----t~~ev~~ 687 (704)
...+..++..+.+++.+||+.||++|| +++|+++
T Consensus 366 ----~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~t~~ell~ 404 (446)
T 4ejn_A 366 ----IRFPRTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQ 404 (446)
T ss_dssp ----CCCCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred ----CCCCccCCHHHHHHHHHHcccCHHHhCCCCCCCHHHHHh
Confidence 001123456788999999999999999 9999865
No 169
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=100.00 E-value=8.5e-39 Score=340.57 Aligned_cols=249 Identities=20% Similarity=0.253 Sum_probs=191.1
Q ss_pred CCCCcc-ccccccCceEEEEEEEC-CCCEEEEEEeeccchhhhHHHHHHHHHHHh-cCCCCCceEEeeeee----CCeEE
Q 005278 415 NGFNEC-NLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQLERASRSFDSECEILRS-IRHRNLIKIISNCCN----IDFKA 487 (704)
Q Consensus 415 ~~~~~~-~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~-l~h~niv~l~~~~~~----~~~~~ 487 (704)
++|... +.||+|+||+||+|... +++.||||++.. ...+.+|+.++.+ .+||||+++++++.. ....+
T Consensus 61 ~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~-----~~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~ 135 (400)
T 1nxk_A 61 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLL 135 (400)
T ss_dssp GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEE
T ss_pred ccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCc-----chhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEE
Confidence 466665 68999999999999865 689999999863 2456788888754 589999999999875 56789
Q ss_pred EEEeccCCCCHHHHHhhCC-CccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCC---CCcEEEeeeccce
Q 005278 488 LVLEFMPNGSLEKWLYSHN-YFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDE---NMTAHVSDFGISK 563 (704)
Q Consensus 488 lv~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~---~~~~kl~Dfgla~ 563 (704)
+||||+++|+|.+++.... ..+++..+..++.|++.||+|||. .+|+||||||+||+++. ++.+||+|||+++
T Consensus 136 lv~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~ 212 (400)
T 1nxk_A 136 IVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHS---INIAHRDVKPENLLYTSKRPNAILKLTDFGFAK 212 (400)
T ss_dssp EEEECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSSSTTCCEEECCCTTCE
T ss_pred EEEEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH---CCccccCcCcceEEEecCCCCccEEEEeccccc
Confidence 9999999999999998653 458999999999999999999964 68999999999999997 7899999999998
Q ss_pred ecCCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccc--cHHHHHHhhcCCCcch
Q 005278 564 LLGEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEM--SLKHWVKESLPDGLTE 641 (704)
Q Consensus 564 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~--~~~~~~~~~~~~~~~~ 641 (704)
...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||........ .....+......
T Consensus 213 ~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~i~~~~~~---- 285 (400)
T 1nxk_A 213 ETTSHN---SLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYE---- 285 (400)
T ss_dssp ECC--------------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHHHHHHHTCCC----
T ss_pred ccCCCC---ccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHHHHHHcCccc----
Confidence 764322 23345789999999999999999999999999999999999999976432211 111111110000
Q ss_pred hccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 005278 642 VVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAK 688 (704)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~ 688 (704)
+ .......++.++.+++..||+.||++|||+.|+++.
T Consensus 286 -----~-----~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~eil~h 322 (400)
T 1nxk_A 286 -----F-----PNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNH 322 (400)
T ss_dssp -----C-----CTTTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred -----C-----CCcccccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 0 000112345678899999999999999999999863
No 170
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=100.00 E-value=6.3e-40 Score=335.15 Aligned_cols=260 Identities=25% Similarity=0.376 Sum_probs=199.2
Q ss_pred hCCCCccccccccCceEEEEEEEC--CCC--EEEEEEeeccc---hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeE
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF--DGT--NVAIKVFNLQL---ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFK 486 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~--~~~--~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~ 486 (704)
.++|+..+.||+|+||+||+|++. +++ .||||+++... ....+.+.+|++++++++||||+++++++.... .
T Consensus 17 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~ 95 (291)
T 1u46_A 17 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-M 95 (291)
T ss_dssp GGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-C
T ss_pred hhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-c
Confidence 357889999999999999999853 333 68999986542 234567899999999999999999999998765 7
Q ss_pred EEEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecC
Q 005278 487 ALVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLG 566 (704)
Q Consensus 487 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~ 566 (704)
++|+||+++|+|.+++......+++..+..++.|++.|++|||. .+|+||||||+||+++.++.+||+|||++....
T Consensus 96 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~ 172 (291)
T 1u46_A 96 KMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLES---KRFIHRDLAARNLLLATRDLVKIGDFGLMRALP 172 (291)
T ss_dssp EEEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEEEETTEEEECCCTTCEECC
T ss_pred eeeEecccCCCHHHHHHhccCCcCHHHHHHHHHHHHHHHHHHHh---CCcccCCCchheEEEcCCCCEEEcccccccccc
Confidence 89999999999999998766668999999999999999999964 689999999999999999999999999998875
Q ss_pred CCCCcc-eeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhh-CCCCCCccccccccHHHHHHhhcCCCcchhcc
Q 005278 567 EGDDSV-IQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFT-RKKPTNEIFIGEMSLKHWVKESLPDGLTEVVD 644 (704)
Q Consensus 567 ~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (704)
...... ......+|+.|+|||++.+..++.++||||||+++|||++ |+.||..... ............
T Consensus 173 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~-----~~~~~~~~~~~~----- 242 (291)
T 1u46_A 173 QNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNG-----SQILHKIDKEGE----- 242 (291)
T ss_dssp C-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCH-----HHHHHHHHTSCC-----
T ss_pred ccccchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCH-----HHHHHHHHccCC-----
Confidence 433221 2233467889999999988889999999999999999999 9999976322 111111111100
Q ss_pred ccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHH
Q 005278 645 ANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEK 695 (704)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~ 695 (704)
....+..++..+.+++..||+.||++||++.|+++.|+++...
T Consensus 243 --------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~ 285 (291)
T 1u46_A 243 --------RLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQPT 285 (291)
T ss_dssp --------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC--
T ss_pred --------CCCCCcCcCHHHHHHHHHHccCCcccCcCHHHHHHHHHHhCcc
Confidence 0111223456788999999999999999999999999987643
No 171
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=100.00 E-value=3e-39 Score=337.47 Aligned_cols=260 Identities=22% Similarity=0.253 Sum_probs=190.4
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccchhhhHHHHHHHHHHHhcC-CCCCceEEeeee--------eC
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQLERASRSFDSECEILRSIR-HRNLIKIISNCC--------NI 483 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~--------~~ 483 (704)
..+|+..+.||+|+||.||+|+.. +++.||||++........+.+.+|+.+++++. ||||+++++++. ..
T Consensus 27 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~ 106 (337)
T 3ll6_A 27 ELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQ 106 (337)
T ss_dssp TEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSS
T ss_pred CceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCC
Confidence 357889999999999999999964 78999999987665556678899999999996 999999999984 34
Q ss_pred CeEEEEEeccCCCCHHHHHhh--CCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeecc
Q 005278 484 DFKALVLEFMPNGSLEKWLYS--HNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGI 561 (704)
Q Consensus 484 ~~~~lv~e~~~~gsL~~~l~~--~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgl 561 (704)
...++||||+. |+|.+++.. ....+++..++.++.|++.||+|||. +..+|+||||||+||+++.++.+||+|||+
T Consensus 107 ~~~~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~-~~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~ 184 (337)
T 3ll6_A 107 AEFLLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHR-QKPPIIHRDLKVENLLLSNQGTIKLCDFGS 184 (337)
T ss_dssp EEEEEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHT-SSSCCBCCCCCGGGCEECTTSCEEBCCCTT
T ss_pred ceEEEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHh-CCCCEEEccCCcccEEECCCCCEEEecCcc
Confidence 45789999996 799999874 34568999999999999999999964 223399999999999999999999999999
Q ss_pred ceecCCCCCcc----------eeccccccccccCCccc---CCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHH
Q 005278 562 SKLLGEGDDSV----------IQTMTIATIGYMAPEYG---SEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLK 628 (704)
Q Consensus 562 a~~~~~~~~~~----------~~~~~~gt~~y~aPE~~---~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~ 628 (704)
++......... ......||+.|+|||++ .+..++.++|||||||++|||++|+.||......
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~----- 259 (337)
T 3ll6_A 185 ATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKL----- 259 (337)
T ss_dssp CBCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC-----------
T ss_pred ceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhHH-----
Confidence 98765432211 11134589999999988 5677899999999999999999999999652211
Q ss_pred HHHHhhcCCCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHHhh
Q 005278 629 HWVKESLPDGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEKFL 697 (704)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~ 697 (704)
......... .....++..+.+++..||+.||++||++.|+++.|+++.+...
T Consensus 260 ~~~~~~~~~-----------------~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~~~~~~~~ 311 (337)
T 3ll6_A 260 RIVNGKYSI-----------------PPHDTQYTVFHSLIRAMLQVNPEERLSIAEVVHQLQEIAAARN 311 (337)
T ss_dssp ------CCC-----------------CTTCCSSGGGHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHHTT
T ss_pred HhhcCcccC-----------------CcccccchHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhccC
Confidence 111100000 0011122346789999999999999999999999999876543
No 172
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=100.00 E-value=3e-40 Score=350.02 Aligned_cols=250 Identities=16% Similarity=0.169 Sum_probs=193.6
Q ss_pred hCCCCccccccccCceEEEEEEE-CCCCEEEEEEeecc---chhhhHHHHHHH---HHHHhcCCCCCceEE-------ee
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTL-FDGTNVAIKVFNLQ---LERASRSFDSEC---EILRSIRHRNLIKII-------SN 479 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~---~~~~~~~~~~e~---~~l~~l~h~niv~l~-------~~ 479 (704)
.++|...+.||+|+||.||+|+. .+|+.||||++... .....+.+.+|+ +.+++++||||++++ ++
T Consensus 72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~ 151 (377)
T 3byv_A 72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL 151 (377)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence 46788899999999999999995 57999999999743 233457789999 555556899999998 55
Q ss_pred eeeCC-----------------eEEEEEeccCCCCHHHHHhhCC------CccCHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 005278 480 CCNID-----------------FKALVLEFMPNGSLEKWLYSHN------YFLGILERLNIMIDVGLALEYLHHGHSTPM 536 (704)
Q Consensus 480 ~~~~~-----------------~~~lv~e~~~~gsL~~~l~~~~------~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~i 536 (704)
+.+.+ ..++||||+ +|+|.+++...+ ..+++..++.++.|++.||+|||. .+|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~i 227 (377)
T 3byv_A 152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHH---YGL 227 (377)
T ss_dssp EECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHH---TTE
T ss_pred hhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHh---CCe
Confidence 55443 278999999 689999998542 224468888999999999999954 689
Q ss_pred EecCCCCCCeeeCCCCcEEEeeeccceecCCCCCcceeccccccccccCCcccCCC-----------CCCcccceeeHHH
Q 005278 537 VHCDLKPNNILLDENMTAHVSDFGISKLLGEGDDSVIQTMTIATIGYMAPEYGSEG-----------IISPKSDVYSYGI 605 (704)
Q Consensus 537 vH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----------~~~~~~Dv~s~Gv 605 (704)
+||||||+||+++.++.+||+|||+++.... ......| +.|+|||++.+. .++.++|||||||
T Consensus 228 vHrDikp~NIll~~~~~~kL~DFG~a~~~~~-----~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~ 301 (377)
T 3byv_A 228 VHTYLRPVDIVLDQRGGVFLTGFEHLVRDGA-----RVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGL 301 (377)
T ss_dssp ECSCCCGGGEEECTTCCEEECCGGGCEETTC-----EEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHH
T ss_pred ecCCCCHHHEEEcCCCCEEEEechhheecCC-----cccCCCC-cCccChhhhcccccccccccccccCChhhhHHHHHH
Confidence 9999999999999999999999999986432 2334467 999999998877 8999999999999
Q ss_pred HHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHH
Q 005278 606 LLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDA 685 (704)
Q Consensus 606 ~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev 685 (704)
++|||++|+.||........ ...+.. ....++..+.+++.+||+.||++||++.|+
T Consensus 302 il~elltg~~Pf~~~~~~~~-------------~~~~~~-----------~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~ 357 (377)
T 3byv_A 302 VIYWIWCADLPITKDAALGG-------------SEWIFR-----------SCKNIPQPVRALLEGFLRYPKEDRLLPLQA 357 (377)
T ss_dssp HHHHHHHSSCCC------CC-------------SGGGGS-----------SCCCCCHHHHHHHHHHTCSSGGGCCCHHHH
T ss_pred HHHHHHHCCCCCcccccccc-------------hhhhhh-----------hccCCCHHHHHHHHHHcCCCchhCCCHHHH
Confidence 99999999999965321110 011100 011335678899999999999999999999
Q ss_pred HH--HHHHhHHHhh
Q 005278 686 AA--KLKKIKEKFL 697 (704)
Q Consensus 686 ~~--~L~~~~~~~~ 697 (704)
++ .++++.+...
T Consensus 358 l~hp~f~~~~~~~~ 371 (377)
T 3byv_A 358 METPEYEQLRTELS 371 (377)
T ss_dssp HTSHHHHHHHHHHH
T ss_pred hhChHHHHHHHHHH
Confidence 86 5555555443
No 173
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=100.00 E-value=3.7e-39 Score=345.78 Aligned_cols=253 Identities=25% Similarity=0.316 Sum_probs=193.1
Q ss_pred HHhCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccch--------hhhHHHHHHHHHHHhcCCCCCceEEeeeee
Q 005278 412 RATNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQLE--------RASRSFDSECEILRSIRHRNLIKIISNCCN 482 (704)
Q Consensus 412 ~~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~--------~~~~~~~~e~~~l~~l~h~niv~l~~~~~~ 482 (704)
...++|...+.||+|+||.||+|... +++.||||++..... .....+.+|++++++++||||+++++++..
T Consensus 132 ~~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~ 211 (419)
T 3i6u_A 132 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA 211 (419)
T ss_dssp HHHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEES
T ss_pred hhhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEec
Confidence 45678999999999999999999864 689999999875421 112347899999999999999999999754
Q ss_pred CCeEEEEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCC---cEEEeee
Q 005278 483 IDFKALVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENM---TAHVSDF 559 (704)
Q Consensus 483 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~---~~kl~Df 559 (704)
+..++||||+++|+|.+++.... .+++..+..++.|++.||+|||. .+|+||||||+||+++.++ .+||+||
T Consensus 212 -~~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~LH~---~~ivHrDlkp~NIll~~~~~~~~~kl~DF 286 (419)
T 3i6u_A 212 -EDYYIVLELMEGGELFDKVVGNK-RLKEATCKLYFYQMLLAVQYLHE---NGIIHRDLKPENVLLSSQEEDCLIKITDF 286 (419)
T ss_dssp -SEEEEEEECCTTCBGGGGTSSSC-CCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESSSSSSCCEEECCS
T ss_pred -CceEEEEEcCCCCcHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHH---CCccccCCChHhEEEecCCCcceEEEeec
Confidence 45799999999999999887554 48999999999999999999964 6899999999999997544 5999999
Q ss_pred ccceecCCCCCcceeccccccccccCCcccCC---CCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcC
Q 005278 560 GISKLLGEGDDSVIQTMTIATIGYMAPEYGSE---GIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLP 636 (704)
Q Consensus 560 gla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~ 636 (704)
|+++...... ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||...... ..+...+.....
T Consensus 287 G~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~-~~~~~~i~~~~~ 362 (419)
T 3i6u_A 287 GHSKILGETS---LMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQ-VSLKDQITSGKY 362 (419)
T ss_dssp STTTSCC--------------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSS-CCHHHHHHTTCC
T ss_pred ccceecCCCc---cccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcch-HHHHHHHhcCCC
Confidence 9998764322 2334579999999998753 66888999999999999999999999763222 222222221111
Q ss_pred CCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 637 DGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
... ......++..+.+++.+||+.||++||++.|+++
T Consensus 363 ~~~--------------~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 399 (419)
T 3i6u_A 363 NFI--------------PEVWAEVSEKALDLVKKLLVVDPKARFTTEEALR 399 (419)
T ss_dssp CCC--------------HHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred CCC--------------chhhcccCHHHHHHHHHHccCChhHCcCHHHHhC
Confidence 000 0111234567889999999999999999999976
No 174
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=100.00 E-value=3e-39 Score=336.29 Aligned_cols=267 Identities=23% Similarity=0.266 Sum_probs=199.7
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccc--hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEE
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL--ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVL 490 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 490 (704)
.++|+..+.||+|+||.||+|+.. +|+.||||++.... ....+.+.+|+.++++++||||+++++++.+.+..++||
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 103 (331)
T 4aaa_A 24 MEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVF 103 (331)
T ss_dssp GGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEE
Confidence 357889999999999999999965 58999999986543 233456889999999999999999999999999999999
Q ss_pred eccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCCC
Q 005278 491 EFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGDD 570 (704)
Q Consensus 491 e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~~ 570 (704)
||+++++|.++..... .+++..+..++.|++.|++||| +.+|+||||||+||+++.++.+||+|||+++.......
T Consensus 104 e~~~~~~l~~~~~~~~-~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~ 179 (331)
T 4aaa_A 104 EFVDHTILDDLELFPN-GLDYQVVQKYLFQIINGIGFCH---SHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGE 179 (331)
T ss_dssp ECCSEEHHHHHHHSTT-CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCTTC--------
T ss_pred ecCCcchHHHHHhhcc-CCCHHHHHHHHHHHHHHHHHHH---HCCEEccCcChheEEEcCCCcEEEEeCCCceeecCCcc
Confidence 9999988888765443 4899999999999999999995 46899999999999999999999999999987643221
Q ss_pred cceeccccccccccCCcccCCC-CCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcC------------C
Q 005278 571 SVIQTMTIATIGYMAPEYGSEG-IISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLP------------D 637 (704)
Q Consensus 571 ~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~------------~ 637 (704)
......||+.|+|||++.+. .++.++||||+||++|||++|+.||......+ .+......... .
T Consensus 180 --~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 256 (331)
T 4aaa_A 180 --VYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDID-QLYHIMMCLGNLIPRHQELFNKNP 256 (331)
T ss_dssp ------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCSCCHHHHHHHHHCG
T ss_pred --ccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCcHH-HHHHHHHHhCCCChhhhhHhhhcc
Confidence 22345689999999988765 78999999999999999999999997632211 11111110000 0
Q ss_pred CcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 638 GLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
.......+..............++..+.+++.+||+.||++|||++|+++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~ 306 (331)
T 4aaa_A 257 VFAGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLH 306 (331)
T ss_dssp GGTTCCCCCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred ccccccCccccccchhhhcccchhHHHHHHHHHHhccCcccCCCHHHHhc
Confidence 00000111111111111122245678999999999999999999999975
No 175
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=100.00 E-value=1.3e-38 Score=344.99 Aligned_cols=263 Identities=19% Similarity=0.221 Sum_probs=210.4
Q ss_pred hCCCCccccccccCceEEEEEEE-CCCCEEEEEEeeccchhhhHHHHHHHHHHHhcCC-CCCceEEeeeeeCCeEEEEEe
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTL-FDGTNVAIKVFNLQLERASRSFDSECEILRSIRH-RNLIKIISNCCNIDFKALVLE 491 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h-~niv~l~~~~~~~~~~~lv~e 491 (704)
.++|.+.++||+|+||.||+|+. .+++.||||++.... ....+..|+++++.++| +++..+..++...+..++|||
T Consensus 6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~--~~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme 83 (483)
T 3sv0_A 6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKT--KHPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMD 83 (483)
T ss_dssp TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTC--SSCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEecccc--ccHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEE
Confidence 46899999999999999999995 579999999876542 23458899999999987 556666666777888999999
Q ss_pred ccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeee---CCCCcEEEeeeccceecCCC
Q 005278 492 FMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILL---DENMTAHVSDFGISKLLGEG 568 (704)
Q Consensus 492 ~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~---~~~~~~kl~Dfgla~~~~~~ 568 (704)
|+ +++|.+++......+++..++.++.||+.||+||| +.+|+||||||+|||+ +.++.+||+|||+++.+...
T Consensus 84 ~~-g~sL~~ll~~~~~~l~~~~~~~i~~qi~~aL~yLH---~~gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~~ 159 (483)
T 3sv0_A 84 LL-GPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVH---SKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDT 159 (483)
T ss_dssp CC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECCGGGTTCEEECCCTTCEECBCT
T ss_pred CC-CCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccCcceEEEecCCCCCeEEEEeCCcceeccCC
Confidence 99 99999999876667999999999999999999995 4689999999999999 58899999999999887554
Q ss_pred CCcc-----eeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccc--cHHHHHHhhcCCCcch
Q 005278 569 DDSV-----IQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEM--SLKHWVKESLPDGLTE 641 (704)
Q Consensus 569 ~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~--~~~~~~~~~~~~~~~~ 641 (704)
.... ......||+.|+|||++.+..++.++|||||||++|||++|+.||.+...... .+..+.......
T Consensus 160 ~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~~~~~~i~~~~~~~---- 235 (483)
T 3sv0_A 160 STHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVAT---- 235 (483)
T ss_dssp TTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHHHHHHHHHHHHHHS----
T ss_pred ccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhHHHHHHHHhhccccc----
Confidence 3211 12245799999999999999999999999999999999999999987433211 111111111000
Q ss_pred hccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHHh
Q 005278 642 VVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEKF 696 (704)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~~ 696 (704)
........++.++.+++..||+.+|++||++.+|++.|+++....
T Consensus 236 ----------~~~~l~~~~p~~l~~li~~cl~~dP~~RPs~~el~~~L~~l~~~~ 280 (483)
T 3sv0_A 236 ----------SIEALCRGYPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDLFIRE 280 (483)
T ss_dssp ----------CHHHHHTTSCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred ----------cHHHHhcCCcHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHHc
Confidence 001112244678899999999999999999999999999986543
No 176
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=100.00 E-value=4.1e-39 Score=329.52 Aligned_cols=248 Identities=21% Similarity=0.270 Sum_probs=203.6
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccc---hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEE
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL---ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALV 489 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 489 (704)
.++|...+.||+|+||.||+|+.. +++.||+|++.... ....+.+.+|+.+++.++||||+++++++.+.+..++|
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv 93 (294)
T 2rku_A 14 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV 93 (294)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEE
Confidence 357888999999999999999965 58899999987543 23456788999999999999999999999999999999
Q ss_pred EeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCC
Q 005278 490 LEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGD 569 (704)
Q Consensus 490 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~ 569 (704)
|||+++++|.+++.... .+++..+..++.|++.|++||| +.+|+||||||+||+++.++.+||+|||++.......
T Consensus 94 ~e~~~~~~L~~~~~~~~-~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~ 169 (294)
T 2rku_A 94 LELCRRRSLLELHKRRK-ALTEPEARYYLRQIVLGCQYLH---RNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDG 169 (294)
T ss_dssp EECCTTCBHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEECCSTT
T ss_pred EecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChHhEEEcCCCCEEEEeccCceecccCc
Confidence 99999999999887543 4899999999999999999995 4689999999999999999999999999998764322
Q ss_pred CcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccchh
Q 005278 570 DSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLVR 649 (704)
Q Consensus 570 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (704)
. ......||+.|+|||++.+..++.++||||||+++|||++|+.||...... ..........
T Consensus 170 ~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~-----~~~~~~~~~~----------- 231 (294)
T 2rku_A 170 E--RKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLK-----ETYLRIKKNE----------- 231 (294)
T ss_dssp C--CBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHH-----HHHHHHHTTC-----------
T ss_pred c--ccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH-----HHHHHHhhcc-----------
Confidence 2 223456899999999999989999999999999999999999999763211 1111000000
Q ss_pred hhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 650 EEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 650 ~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
...+..++..+.+++.+||+.||++||++.|+++
T Consensus 232 ----~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~ 265 (294)
T 2rku_A 232 ----YSIPKHINPVAASLIQKMLQTDPTARPTINELLN 265 (294)
T ss_dssp ----CCCCTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred ----CCCccccCHHHHHHHHHHcccChhhCcCHHHHhh
Confidence 0111123456788999999999999999999965
No 177
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=100.00 E-value=4.6e-39 Score=327.44 Aligned_cols=246 Identities=24% Similarity=0.294 Sum_probs=202.8
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccc---hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEE
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL---ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALV 489 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 489 (704)
.++|...+.||+|+||.||+|+.. +++.||+|++.... ....+.+.+|++++++++||||+++++++.+.+..++|
T Consensus 13 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 92 (284)
T 2vgo_A 13 IDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLM 92 (284)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEE
Confidence 357889999999999999999865 57899999986542 22346789999999999999999999999999999999
Q ss_pred EeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCC
Q 005278 490 LEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGD 569 (704)
Q Consensus 490 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~ 569 (704)
|||+++|+|.+++.... .+++..+..++.|++.|++||| +.+|+||||||+||+++.++.+||+|||++.......
T Consensus 93 ~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~ 168 (284)
T 2vgo_A 93 LEFAPRGELYKELQKHG-RFDEQRSATFMEELADALHYCH---ERKVIHRDIKPENLLMGYKGELKIADFGWSVHAPSLR 168 (284)
T ss_dssp ECCCTTEEHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECTTCCEEECCCTTCEECSSSC
T ss_pred EEeCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEEcCCCCEEEecccccccCcccc
Confidence 99999999999998654 4899999999999999999995 5789999999999999999999999999997654322
Q ss_pred CcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccchh
Q 005278 570 DSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLVR 649 (704)
Q Consensus 570 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (704)
.....|++.|+|||++.+..++.++||||||+++|||++|+.||...... ..........
T Consensus 169 ----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~-----~~~~~~~~~~----------- 228 (284)
T 2vgo_A 169 ----RRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHT-----ETHRRIVNVD----------- 228 (284)
T ss_dssp ----BCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHH-----HHHHHHHTTC-----------
T ss_pred ----cccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCCHh-----HHHHHHhccc-----------
Confidence 23456899999999999999999999999999999999999999753211 1111100000
Q ss_pred hhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 650 EEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 650 ~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
...+..++..+.+++.+|++.||++||++.|+++
T Consensus 229 ----~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~ 262 (284)
T 2vgo_A 229 ----LKFPPFLSDGSKDLISKLLRYHPPQRLPLKGVME 262 (284)
T ss_dssp ----CCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred ----cCCCCcCCHHHHHHHHHHhhcCHhhCCCHHHHhh
Confidence 0011123456789999999999999999999975
No 178
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=3.3e-39 Score=338.01 Aligned_cols=271 Identities=24% Similarity=0.313 Sum_probs=199.3
Q ss_pred HHHHhCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccch-----hhhHHHHHHHHHHHhcCCCCCceEEeeeeeC
Q 005278 410 IQRATNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQLE-----RASRSFDSECEILRSIRHRNLIKIISNCCNI 483 (704)
Q Consensus 410 ~~~~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~-----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~ 483 (704)
+....++|...+.||+|+||.||+|+.. +|+.||||++..... ...+.+.+|++++++++||||+++++++.+.
T Consensus 5 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~ 84 (346)
T 1ua2_A 5 VKSRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHK 84 (346)
T ss_dssp --------CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCT
T ss_pred hHHHhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeC
Confidence 3455678999999999999999999964 689999999865321 1234688999999999999999999999999
Q ss_pred CeEEEEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccce
Q 005278 484 DFKALVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISK 563 (704)
Q Consensus 484 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~ 563 (704)
+..++||||+++ +|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++
T Consensus 85 ~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~ 160 (346)
T 1ua2_A 85 SNISLVFDFMET-DLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLH---QHWILHRDLKPNNLLLDENGVLKLADFGLAK 160 (346)
T ss_dssp TCCEEEEECCSE-EHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECCCGGGS
T ss_pred CceEEEEEcCCC-CHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHH---HCCEECCCCCHHHEEEcCCCCEEEEecccce
Confidence 999999999986 899999877777899999999999999999995 4689999999999999999999999999998
Q ss_pred ecCCCCCcceeccccccccccCCcccCC-CCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhc-CC--Cc
Q 005278 564 LLGEGDDSVIQTMTIATIGYMAPEYGSE-GIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESL-PD--GL 639 (704)
Q Consensus 564 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~-~~--~~ 639 (704)
....... ......||+.|+|||++.+ ..++.++|||||||++|||++|..||.+....+ .+........ +. .+
T Consensus 161 ~~~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~~~~-~~~~i~~~~~~~~~~~~ 237 (346)
T 1ua2_A 161 SFGSPNR--AYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLD-QLTRIFETLGTPTEEQW 237 (346)
T ss_dssp TTTSCCC--CCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHHHCCCCTTTS
T ss_pred eccCCcc--cCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCCHHH-HHHHHHHHcCCCChhhh
Confidence 7643321 2334578999999998865 458899999999999999999999987632211 1222221111 10 01
Q ss_pred chhcc-ccch-----hhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 640 TEVVD-ANLV-----REEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 640 ~~~~~-~~~~-----~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
..... +... ...+.......++..+.+++.+||+.||++|||+.|+++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 291 (346)
T 1ua2_A 238 PDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALK 291 (346)
T ss_dssp SSTTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred hhhccCcccccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhc
Confidence 11000 0000 000000111234567899999999999999999999965
No 179
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=100.00 E-value=9.2e-39 Score=328.56 Aligned_cols=250 Identities=24% Similarity=0.334 Sum_probs=200.9
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEEec
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQLERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVLEF 492 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 492 (704)
.++|...+.||+|+||.||+|+.. +|+.||+|++........+.+.+|++++++++||||+++++++.+....++||||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 87 (304)
T 2jam_A 8 RKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQL 87 (304)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred hccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEEEc
Confidence 457888999999999999999965 7999999999865444556789999999999999999999999999999999999
Q ss_pred cCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeee---CCCCcEEEeeeccceecCCCC
Q 005278 493 MPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILL---DENMTAHVSDFGISKLLGEGD 569 (704)
Q Consensus 493 ~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~---~~~~~~kl~Dfgla~~~~~~~ 569 (704)
+++|+|.+++...+ .+++..+..++.|++.|++||| +.+|+||||||+||++ +.++.+||+|||++......
T Consensus 88 ~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~- 162 (304)
T 2jam_A 88 VSGGELFDRILERG-VYTEKDASLVIQQVLSAVKYLH---ENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNG- 162 (304)
T ss_dssp CCSCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCCCB-
T ss_pred CCCccHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEEecCCCCCCEEEccCCcceecCCC-
Confidence 99999999987654 4889999999999999999995 4689999999999999 78899999999999764322
Q ss_pred CcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccchh
Q 005278 570 DSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLVR 649 (704)
Q Consensus 570 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (704)
......||+.|+|||++.+..++.++||||+|+++|||++|+.||...... .....+...... .
T Consensus 163 ---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--~~~~~i~~~~~~-~---------- 226 (304)
T 2jam_A 163 ---IMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETES--KLFEKIKEGYYE-F---------- 226 (304)
T ss_dssp ---TTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSCHH--HHHHHHHHCCCC-C----------
T ss_pred ---ccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHH--HHHHHHHcCCCC-C----------
Confidence 123446899999999999999999999999999999999999999763211 111111110000 0
Q ss_pred hhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 650 EEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 650 ~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
.......++..+.+++.+|++.||++||++.|+++
T Consensus 227 ---~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 261 (304)
T 2jam_A 227 ---ESPFWDDISESAKDFICHLLEKDPNERYTCEKALS 261 (304)
T ss_dssp ---CTTTTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred ---CccccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 00111234567889999999999999999999975
No 180
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=100.00 E-value=7.7e-39 Score=349.90 Aligned_cols=248 Identities=22% Similarity=0.276 Sum_probs=202.4
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccch---hhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEE
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQLE---RASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALV 489 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 489 (704)
.++|...+.||+|+||.||+|+.. +|+.||+|++..... .....+..|++++++++||||+++++++.+....++|
T Consensus 184 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV 263 (543)
T 3c4z_A 184 EDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLV 263 (543)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEE
Confidence 367888999999999999999975 699999999975432 2345788999999999999999999999999999999
Q ss_pred EeccCCCCHHHHHhhC---CCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecC
Q 005278 490 LEFMPNGSLEKWLYSH---NYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLG 566 (704)
Q Consensus 490 ~e~~~~gsL~~~l~~~---~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~ 566 (704)
|||+++|+|.+++... ...+++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+++.+.
T Consensus 264 mE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH---~~gIvHrDLKP~NILl~~~g~vkL~DFGla~~~~ 340 (543)
T 3c4z_A 264 MTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLH---QRNIIYRDLKPENVLLDDDGNVRISDLGLAVELK 340 (543)
T ss_dssp ECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEECCCTTCEECC
T ss_pred EEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHH---HcCCcccCCChHHEEEeCCCCEEEeecceeeecc
Confidence 9999999999999754 345899999999999999999995 4689999999999999999999999999998875
Q ss_pred CCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhcccc
Q 005278 567 EGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDAN 646 (704)
Q Consensus 567 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (704)
.... ......||+.|+|||++.+..++.++|||||||++|||++|+.||...... .....+.......
T Consensus 341 ~~~~--~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~-~~~~~~~~~i~~~--------- 408 (543)
T 3c4z_A 341 AGQT--KTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEK-VENKELKQRVLEQ--------- 408 (543)
T ss_dssp TTCC--CBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCC-CCHHHHHHHHHHC---------
T ss_pred CCCc--ccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccc-hhHHHHHHHHhhc---------
Confidence 4322 123357999999999999999999999999999999999999999764221 1112221111100
Q ss_pred chhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCH
Q 005278 647 LVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSM 682 (704)
Q Consensus 647 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~ 682 (704)
....+..++..+.+++.+||+.||++||++
T Consensus 409 ------~~~~p~~~s~~~~~li~~lL~~dP~~R~~~ 438 (543)
T 3c4z_A 409 ------AVTYPDKFSPASKDFCEALLQKDPEKRLGF 438 (543)
T ss_dssp ------CCCCCTTSCHHHHHHHHHHSCSSGGGSCCC
T ss_pred ------ccCCCcccCHHHHHHHHHhccCCHhHCCCC
Confidence 001112345678899999999999999975
No 181
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=100.00 E-value=1.8e-38 Score=334.30 Aligned_cols=255 Identities=25% Similarity=0.344 Sum_probs=203.9
Q ss_pred HHHHhCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccch--------hhhHHHHHHHHHHHhc-CCCCCceEEee
Q 005278 410 IQRATNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQLE--------RASRSFDSECEILRSI-RHRNLIKIISN 479 (704)
Q Consensus 410 ~~~~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~--------~~~~~~~~e~~~l~~l-~h~niv~l~~~ 479 (704)
.....++|...+.||+|+||.||+|+.. +|+.||||++..... ...+.+.+|+.+++++ +||||++++++
T Consensus 89 ~~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~ 168 (365)
T 2y7j_A 89 AKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDS 168 (365)
T ss_dssp HHHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEE
T ss_pred hhhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEE
Confidence 3445578999999999999999999975 799999999865431 1245688999999999 79999999999
Q ss_pred eeeCCeEEEEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeee
Q 005278 480 CCNIDFKALVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDF 559 (704)
Q Consensus 480 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Df 559 (704)
+......++||||+++|+|.+++.... .+++..+..++.|++.||+|||. .+|+||||||+||+++.++.+||+||
T Consensus 169 ~~~~~~~~lv~e~~~g~~L~~~l~~~~-~l~~~~~~~i~~qi~~~L~~LH~---~gi~H~Dlkp~NIl~~~~~~ikl~Df 244 (365)
T 2y7j_A 169 YESSSFMFLVFDLMRKGELFDYLTEKV-ALSEKETRSIMRSLLEAVSFLHA---NNIVHRDLKPENILLDDNMQIRLSDF 244 (365)
T ss_dssp EEBSSEEEEEECCCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCC
T ss_pred EeeCCEEEEEEEeCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEECCCCCEEEEec
Confidence 999999999999999999999997543 48999999999999999999964 68999999999999999999999999
Q ss_pred ccceecCCCCCcceeccccccccccCCcccCC------CCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHh
Q 005278 560 GISKLLGEGDDSVIQTMTIATIGYMAPEYGSE------GIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKE 633 (704)
Q Consensus 560 gla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~ 633 (704)
|++..+..... .....||+.|+|||++.+ ..++.++|||||||++|||++|+.||..... ......+..
T Consensus 245 G~~~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~--~~~~~~i~~ 319 (365)
T 2y7j_A 245 GFSCHLEPGEK---LRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQ--ILMLRMIME 319 (365)
T ss_dssp TTCEECCTTCC---BCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHH
T ss_pred CcccccCCCcc---cccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCCCH--HHHHHHHHh
Confidence 99987754322 234579999999998753 3588899999999999999999999965211 111111111
Q ss_pred hcCCCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 634 SLPDGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
.... . ..+....++..+.+++.+||+.||++||++.|+++
T Consensus 320 ~~~~-----------~---~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~ 359 (365)
T 2y7j_A 320 GQYQ-----------F---SSPEWDDRSSTVKDLISRLLQVDPEARLTAEQALQ 359 (365)
T ss_dssp TCCC-----------C---CHHHHSSSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred CCCC-----------C---CCcccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 0000 0 00111234567889999999999999999999965
No 182
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=100.00 E-value=1.3e-39 Score=334.74 Aligned_cols=253 Identities=24% Similarity=0.294 Sum_probs=200.0
Q ss_pred HhCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEEe
Q 005278 413 ATNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQLERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVLE 491 (704)
Q Consensus 413 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 491 (704)
..++|++.+.||+|+||.||+|+.. +++.||+|++........+.+.+|+++++.++||||+++++++...+..++|||
T Consensus 17 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 96 (302)
T 2j7t_A 17 PNEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIE 96 (302)
T ss_dssp GGGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEE
T ss_pred CccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEE
Confidence 3468899999999999999999975 589999999876655556789999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCCCc
Q 005278 492 FMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGDDS 571 (704)
Q Consensus 492 ~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~~~ 571 (704)
|+++|+|.+++......+++..+..++.|++.|++||| +.+|+||||||+||+++.++.+||+|||++...... .
T Consensus 97 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--~ 171 (302)
T 2j7t_A 97 FCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLH---SKRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKT--L 171 (302)
T ss_dssp CCTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTSCEEECCCHHHHHHHHH--H
T ss_pred eCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh---cCCcccCCCCHHHEEECCCCCEEEEECCCCcccccc--c
Confidence 99999999999876667999999999999999999995 468999999999999999999999999987543211 1
Q ss_pred ceeccccccccccCCccc-----CCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhcccc
Q 005278 572 VIQTMTIATIGYMAPEYG-----SEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDAN 646 (704)
Q Consensus 572 ~~~~~~~gt~~y~aPE~~-----~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (704)
.......||+.|+|||++ .+..++.++||||||+++|||++|+.||....... ..........+
T Consensus 172 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~-~~~~~~~~~~~---------- 240 (302)
T 2j7t_A 172 QKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMR-VLLKIAKSDPP---------- 240 (302)
T ss_dssp HC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCHHH-HHHHHHHSCCC----------
T ss_pred cccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCHHH-HHHHHhccCCc----------
Confidence 112234689999999987 46778999999999999999999999997632211 11111111000
Q ss_pred chhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 647 LVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 647 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
....+..++..+.+++..||+.||++||++.|+++
T Consensus 241 ------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 275 (302)
T 2j7t_A 241 ------TLLTPSKWSVEFRDFLKIALDKNPETRPSAAQLLE 275 (302)
T ss_dssp ------CCSSGGGSCHHHHHHHHHHSCSCTTTSCCHHHHTT
T ss_pred ------ccCCccccCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 00112234567889999999999999999999975
No 183
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=100.00 E-value=7.8e-39 Score=330.80 Aligned_cols=252 Identities=26% Similarity=0.309 Sum_probs=201.0
Q ss_pred HHhCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEE
Q 005278 412 RATNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQLERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVL 490 (704)
Q Consensus 412 ~~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 490 (704)
...++|+..+.||+|+||.||+|... +|+.||||.+... .....+.+|+.++++++||||+++++++......++||
T Consensus 26 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 103 (314)
T 3com_A 26 QPEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVE--SDLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVM 103 (314)
T ss_dssp ----CEEEEEECC----CEEEEEEETTTCCEEEEEEEETT--SCCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred cchhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCch--HHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEe
Confidence 34578999999999999999999865 5899999998753 33567899999999999999999999999999999999
Q ss_pred eccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCCC
Q 005278 491 EFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGDD 570 (704)
Q Consensus 491 e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~~ 570 (704)
||+++|+|.+++......+++..+..++.+++.|++||| +.+|+||||||+||+++.++.+||+|||++........
T Consensus 104 e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~ 180 (314)
T 3com_A 104 EYCGAGSVSDIIRLRNKTLTEDEIATILQSTLKGLEYLH---FMRKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTMA 180 (314)
T ss_dssp ECCTTEEHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECBTTBS
T ss_pred ecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCCcCCCcCHHHEEECCCCCEEEeecccchhhhhhcc
Confidence 999999999999866667899999999999999999995 47899999999999999999999999999987654321
Q ss_pred cceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccchhh
Q 005278 571 SVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLVRE 650 (704)
Q Consensus 571 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (704)
......||+.|+|||++.+..++.++||||||+++|||++|+.||....... .........+..
T Consensus 181 --~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~--~~~~~~~~~~~~------------ 244 (314)
T 3com_A 181 --KRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMR--AIFMIPTNPPPT------------ 244 (314)
T ss_dssp --CBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHHH--HHHHHHHSCCCC------------
T ss_pred --ccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCChHH--HHHHHhcCCCcc------------
Confidence 2234568999999999999999999999999999999999999997532111 000111110000
Q ss_pred hhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 651 EQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 651 ~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
...+..++..+.+++.+||+.||++||++.|+++
T Consensus 245 ---~~~~~~~~~~l~~li~~~l~~dp~~Rpt~~~ll~ 278 (314)
T 3com_A 245 ---FRKPELWSDNFTDFVKQCLVKSPEQRATATQLLQ 278 (314)
T ss_dssp ---CSSGGGSCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred ---cCCcccCCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence 0112234567889999999999999999999965
No 184
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=100.00 E-value=3.4e-39 Score=336.11 Aligned_cols=251 Identities=22% Similarity=0.286 Sum_probs=198.1
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccchhhhHHHHHHHHHHHhc-CCCCCceEEeeeeeCCeEEEEEe
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQLERASRSFDSECEILRSI-RHRNLIKIISNCCNIDFKALVLE 491 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e 491 (704)
.++|+..+.||+|+||.||+|+.. +++.||||++.... ....+|++++.++ +||||+++++++.+.+..++|||
T Consensus 21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~----~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E 96 (342)
T 2qr7_A 21 TDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSK----RDPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVTE 96 (342)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTT----CCCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEEC
T ss_pred cccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEccc----CChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEEe
Confidence 467899999999999999999865 68999999987542 2345688888888 79999999999999999999999
Q ss_pred ccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCC----CcEEEeeeccceecCC
Q 005278 492 FMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDEN----MTAHVSDFGISKLLGE 567 (704)
Q Consensus 492 ~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~----~~~kl~Dfgla~~~~~ 567 (704)
|+++|+|.+++...+ .+++..+..++.|++.|++||| +.+|+||||||+||++..+ +.+||+|||++.....
T Consensus 97 ~~~gg~L~~~i~~~~-~~~~~~~~~~~~qi~~al~~lH---~~givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~~ 172 (342)
T 2qr7_A 97 LMKGGELLDKILRQK-FFSEREASAVLFTITKTVEYLH---AQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRA 172 (342)
T ss_dssp CCCSCBHHHHHHTCT-TCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEESSSSCSGGGEEECCCTTCEECBC
T ss_pred CCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCcEeccCCHHHEEEecCCCCcCeEEEEECCCcccCcC
Confidence 999999999997654 4899999999999999999995 4689999999999998533 3599999999987654
Q ss_pred CCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccc
Q 005278 568 GDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANL 647 (704)
Q Consensus 568 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (704)
... ......||+.|+|||++.+..++.++|||||||++|||++|..||..... ................ +
T Consensus 173 ~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~--~~~~~~~~~i~~~~~~------~ 242 (342)
T 2qr7_A 173 ENG--LLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPD--DTPEEILARIGSGKFS------L 242 (342)
T ss_dssp TTC--CBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTT--SCHHHHHHHHHHCCCC------C
T ss_pred CCC--ceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCc--CCHHHHHHHHccCCcc------c
Confidence 322 22345789999999999888889999999999999999999999975321 1112221111000000 0
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 648 VREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 648 ~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
. ......++..+.+++.+||+.||++||++.|+++
T Consensus 243 ~-----~~~~~~~s~~~~~li~~~L~~dP~~R~t~~~il~ 277 (342)
T 2qr7_A 243 S-----GGYWNSVSDTAKDLVSKMLHVDPHQRLTAALVLR 277 (342)
T ss_dssp C-----STTTTTSCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred C-----ccccccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 0 0011234567889999999999999999999865
No 185
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=100.00 E-value=3.8e-39 Score=335.91 Aligned_cols=248 Identities=22% Similarity=0.288 Sum_probs=203.6
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccc---hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEE
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL---ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALV 489 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 489 (704)
.++|...+.||+|+||.||+++.. +++.||+|++.... ....+.+.+|+.+++.++||||+++++++.+.+..++|
T Consensus 40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 119 (335)
T 2owb_A 40 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV 119 (335)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred CCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEE
Confidence 457888999999999999999965 58899999987543 23456789999999999999999999999999999999
Q ss_pred EeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCC
Q 005278 490 LEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGD 569 (704)
Q Consensus 490 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~ 569 (704)
|||+++++|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++.......
T Consensus 120 ~e~~~~~~L~~~~~~~~-~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~ 195 (335)
T 2owb_A 120 LELCRRRSLLELHKRRK-ALTEPEARYYLRQIVLGCQYLH---RNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDG 195 (335)
T ss_dssp ECCCTTCBHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTCCEEECCCTTCEECCSTT
T ss_pred EecCCCCCHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHH---HCCCEecCCCchhEEEcCCCCEEEeeccCceecccCc
Confidence 99999999999887543 4899999999999999999995 4689999999999999999999999999998764332
Q ss_pred CcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccchh
Q 005278 570 DSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLVR 649 (704)
Q Consensus 570 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (704)
. ......||+.|+|||++.+..++.++||||||+++|||++|+.||......+ .+......
T Consensus 196 ~--~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-~~~~~~~~---------------- 256 (335)
T 2owb_A 196 E--RKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKE-TYLRIKKN---------------- 256 (335)
T ss_dssp C--CBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHH-HHHHHHHT----------------
T ss_pred c--cccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCHHH-HHHHHhcC----------------
Confidence 2 2234568999999999998889999999999999999999999997532111 01110000
Q ss_pred hhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 650 EEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 650 ~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
....+..++..+.+++.+||+.||++||++.|+++
T Consensus 257 ---~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 291 (335)
T 2owb_A 257 ---EYSIPKHINPVAASLIQKMLQTDPTARPTINELLN 291 (335)
T ss_dssp ---CCCCCTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred ---CCCCCccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 00111123456788999999999999999999965
No 186
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=100.00 E-value=5.4e-39 Score=348.22 Aligned_cols=261 Identities=20% Similarity=0.220 Sum_probs=194.0
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccc--hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeC------C
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL--ERASRSFDSECEILRSIRHRNLIKIISNCCNI------D 484 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~------~ 484 (704)
.++|+..+.||+|+||+||+|... +++.||||++.... ....+.+.+|+.+++.++||||+++++++... .
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 140 (464)
T 3ttj_A 61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ 140 (464)
T ss_dssp ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCC
Confidence 468999999999999999999854 68999999997542 33456788999999999999999999999654 3
Q ss_pred eEEEEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeecccee
Q 005278 485 FKALVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKL 564 (704)
Q Consensus 485 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~ 564 (704)
..++||||+++ ++.+.+.. .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+|+.
T Consensus 141 ~~~lv~E~~~~-~l~~~~~~---~l~~~~~~~~~~qil~aL~~lH---~~~iiHrDlkp~NIll~~~~~~kl~DFG~a~~ 213 (464)
T 3ttj_A 141 DVYLVMELMDA-NLCQVIQM---ELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLART 213 (464)
T ss_dssp EEEEEEECCSE-EHHHHHTS---CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCCCC--
T ss_pred eEEEEEeCCCC-CHHHHHhh---cCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChHhEEEeCCCCEEEEEEEeeee
Confidence 57999999976 57666653 3889999999999999999995 46899999999999999999999999999987
Q ss_pred cCCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCC------
Q 005278 565 LGEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDG------ 638 (704)
Q Consensus 565 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~------ 638 (704)
..... ......||+.|+|||++.+..++.++||||+||++|||++|+.||.+....+ .+...+.......
T Consensus 214 ~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~~~~-~~~~i~~~lg~p~~~~~~~ 289 (464)
T 3ttj_A 214 AGTSF---MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYID-QWNKVIEQLGTPCPEFMKK 289 (464)
T ss_dssp ---CC---CC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHHHCSCCHHHHTT
T ss_pred cCCCc---ccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHhcCCCCHHHHHH
Confidence 64322 2344579999999999999999999999999999999999999997632111 1111111000000
Q ss_pred -------------------cchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 639 -------------------LTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 639 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
+.......... .........+..+.+++.+||+.||++|||++|+++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~ 355 (464)
T 3ttj_A 290 LQPTVRNYVENRPKYAGLTFPKLFPDSLFP--ADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQ 355 (464)
T ss_dssp SCHHHHHHHTTSCCCCCCCHHHHSCGGGSC--CSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred cchhhhhHhhcccccCCCChHHhCcccccc--cccccccccCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 00000000000 000111223567899999999999999999999975
No 187
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=100.00 E-value=1.3e-38 Score=325.06 Aligned_cols=249 Identities=23% Similarity=0.351 Sum_probs=196.1
Q ss_pred CCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccc--hhhhHHHHHHHHHHHhcCCCCCceEEeeeee----CCeEE
Q 005278 415 NGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL--ERASRSFDSECEILRSIRHRNLIKIISNCCN----IDFKA 487 (704)
Q Consensus 415 ~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~----~~~~~ 487 (704)
..|...+.||+|+||.||+|... ++..||+|.+.... ....+.+.+|+.++++++||||+++++++.. ....+
T Consensus 26 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 105 (290)
T 1t4h_A 26 RFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIV 105 (290)
T ss_dssp CEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEE
T ss_pred eeEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEE
Confidence 34677788999999999999864 68899999987543 3345678999999999999999999999865 35689
Q ss_pred EEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeC-CCCcEEEeeeccceecC
Q 005278 488 LVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLD-ENMTAHVSDFGISKLLG 566 (704)
Q Consensus 488 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~-~~~~~kl~Dfgla~~~~ 566 (704)
+||||+++|+|.+++.... .+++..+..++.|++.||+|||. +..+|+||||||+||+++ .++.+||+|||++....
T Consensus 106 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH~-~~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~~~~ 183 (290)
T 1t4h_A 106 LVTELMTSGTLKTYLKRFK-VMKIKVLRSWCRQILKGLQFLHT-RTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKR 183 (290)
T ss_dssp EEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHT-SSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCC
T ss_pred EEEEecCCCCHHHHHHHcc-CCCHHHHHHHHHHHHHHHHHHHc-CCCCEEECCCCHHHEEEECCCCCEEEeeCCCccccc
Confidence 9999999999999998643 38899999999999999999965 223499999999999998 88999999999997643
Q ss_pred CCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhcccc
Q 005278 567 EGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDAN 646 (704)
Q Consensus 567 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (704)
.. ......||+.|+|||++.+ .++.++||||+|+++|+|++|+.||...... .............
T Consensus 184 ~~----~~~~~~~t~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~----~~~~~~~~~~~~~------ 248 (290)
T 1t4h_A 184 AS----FAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNA----AQIYRRVTSGVKP------ 248 (290)
T ss_dssp TT----SBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSH----HHHHHHHTTTCCC------
T ss_pred cc----ccccccCCcCcCCHHHHhc-cCCCcchHHHHHHHHHHHHhCCCCCCCcCcH----HHHHHHHhccCCc------
Confidence 32 1233468999999998764 5899999999999999999999999763221 1111111111000
Q ss_pred chhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 647 LVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 647 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
...+...+..+.+++..||+.||++||++.|+++
T Consensus 249 -------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 282 (290)
T 1t4h_A 249 -------ASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN 282 (290)
T ss_dssp -------GGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred -------cccCCCCCHHHHHHHHHHccCChhhCCCHHHHhh
Confidence 0111123456889999999999999999999964
No 188
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=100.00 E-value=1.8e-38 Score=325.04 Aligned_cols=251 Identities=24% Similarity=0.331 Sum_probs=197.9
Q ss_pred CCCCccccccccCceEEEEEEE-CCCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEEecc
Q 005278 415 NGFNECNLLGTGSFGSVYKGTL-FDGTNVAIKVFNLQLERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVLEFM 493 (704)
Q Consensus 415 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 493 (704)
++|.....||+|+||.||+|+. .+++.||||.+........+.+.+|+.+++.++||||+++++++...+..++||||+
T Consensus 22 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~ 101 (295)
T 2clq_A 22 DENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQV 101 (295)
T ss_dssp CTTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred cCCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEeC
Confidence 3455566999999999999995 468899999997665555678999999999999999999999999999999999999
Q ss_pred CCCCHHHHHhhCC--CccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCC-CCcEEEeeeccceecCCCCC
Q 005278 494 PNGSLEKWLYSHN--YFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDE-NMTAHVSDFGISKLLGEGDD 570 (704)
Q Consensus 494 ~~gsL~~~l~~~~--~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~-~~~~kl~Dfgla~~~~~~~~ 570 (704)
++++|.+++.... ..+++..+..++.|++.|++||| +.+|+||||||+||+++. ++.+||+|||++........
T Consensus 102 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~~~ 178 (295)
T 2clq_A 102 PGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLH---DNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGINP 178 (295)
T ss_dssp SEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTCCEEECCTTTCEESCC---
T ss_pred CCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHH---hCCEEccCCChhhEEEECCCCCEEEeecccccccCCCCC
Confidence 9999999998653 34578889999999999999996 468999999999999987 89999999999987643221
Q ss_pred cceeccccccccccCCcccCCCC--CCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccch
Q 005278 571 SVIQTMTIATIGYMAPEYGSEGI--ISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLV 648 (704)
Q Consensus 571 ~~~~~~~~gt~~y~aPE~~~~~~--~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (704)
......||+.|+|||++.+.. ++.++||||||+++|||++|+.||...................
T Consensus 179 --~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~------------ 244 (295)
T 2clq_A 179 --CTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKVGMFKVH------------ 244 (295)
T ss_dssp ----CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHHHHHHHHHHCCC------------
T ss_pred --cccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchhHHHHhhcccccc------------
Confidence 223456899999999987643 7889999999999999999999997532211111110000000
Q ss_pred hhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 649 REEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 649 ~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
...+..++..+.+++.+||+.||++||++.|+++
T Consensus 245 -----~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 278 (295)
T 2clq_A 245 -----PEIPESMSAEAKAFILKCFEPDPDKRACANDLLV 278 (295)
T ss_dssp -----CCCCTTSCHHHHHHHHHTTCSSTTTSCCHHHHHT
T ss_pred -----ccccccCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 0111234567889999999999999999999964
No 189
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=100.00 E-value=2e-39 Score=341.99 Aligned_cols=266 Identities=23% Similarity=0.299 Sum_probs=203.4
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccc-hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEEe
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL-ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVLE 491 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 491 (704)
.++|+..+.||+|+||.||+|+.. +++.||+|++.... ....+.+.+|+.++++++||||+++++++...+..++|||
T Consensus 32 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 111 (360)
T 3eqc_A 32 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME 111 (360)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred cccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEE
Confidence 367899999999999999999965 68999999987653 3345678999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCCCc
Q 005278 492 FMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGDDS 571 (704)
Q Consensus 492 ~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~~~ 571 (704)
|+++|+|.+++.... .+++..+..++.+++.|++|||+. .+|+||||||+||+++.++.+||+|||++......
T Consensus 112 ~~~~~~L~~~l~~~~-~~~~~~~~~i~~~i~~~l~~lh~~--~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--- 185 (360)
T 3eqc_A 112 HMDGGSLDQVLKKAG-RIPEQILGKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS--- 185 (360)
T ss_dssp CCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHHH--HCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHH---
T ss_pred CCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHh--CCEEcCCccHHHEEECCCCCEEEEECCCCcccccc---
Confidence 999999999998654 388999999999999999999752 27999999999999999999999999998755321
Q ss_pred ceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHH----------------------
Q 005278 572 VIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKH---------------------- 629 (704)
Q Consensus 572 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~---------------------- 629 (704)
......||+.|+|||++.+..++.++|||||||++|||++|+.||......+.....
T Consensus 186 -~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (360)
T 3eqc_A 186 -MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPL 264 (360)
T ss_dssp -C----CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCCCHHHHHHHHC---------------------
T ss_pred -cccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcccccccCCCCCCCcccCCCcc
Confidence 123346899999999999999999999999999999999999999763221110000
Q ss_pred --HHHhhc-CCCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 630 --WVKESL-PDGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 630 --~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
+..... +....+..+..... .........++..+.+++.+||+.||++|||++|+++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 324 (360)
T 3eqc_A 265 NKFGMDSRPPMAIFELLDYIVNE-PPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMV 324 (360)
T ss_dssp ---------CCCHHHHHHHHHHS-CCCCCCTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred cccccCCCCcccchhhhhHHhcc-CCCCCCcccccHHHHHHHHHHhhcChhhCCCHHHHhh
Confidence 000000 00000000000000 0000111224567899999999999999999999975
No 190
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=100.00 E-value=7.3e-39 Score=348.65 Aligned_cols=195 Identities=25% Similarity=0.375 Sum_probs=153.7
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccc--hhhhHHHHHHHHHHHhcCCCCCceEEeeeee-----CCe
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL--ERASRSFDSECEILRSIRHRNLIKIISNCCN-----IDF 485 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~-----~~~ 485 (704)
.++|++.+.||+|+||+||+|+.. +++.||||++.... ....+.+.+|++++++++||||+++++++.. ...
T Consensus 52 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 131 (458)
T 3rp9_A 52 PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDE 131 (458)
T ss_dssp CTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred CCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCce
Confidence 468999999999999999999854 78999999986532 3345678999999999999999999999844 356
Q ss_pred EEEEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceec
Q 005278 486 KALVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLL 565 (704)
Q Consensus 486 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~ 565 (704)
.++||||+ +|+|.+++... ..+++..+..++.||+.||+||| +.+|+||||||+|||++.++.+||+|||+|+..
T Consensus 132 ~~lv~e~~-~~~L~~~~~~~-~~l~~~~~~~~~~qi~~aL~~LH---~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~ 206 (458)
T 3rp9_A 132 LYVVLEIA-DSDFKKLFRTP-VYLTELHIKTLLYNLLVGVKYVH---SAGILHRDLKPANCLVNQDCSVKVCDFGLARTV 206 (458)
T ss_dssp EEEEECCC-SEEHHHHHHSS-CCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTCCEEECCCTTCBCT
T ss_pred EEEEEecc-ccchhhhcccC-CCCCHHHHHHHHHHHHHHHHHHH---hCCcCCCCCChhhEEECCCCCEeecccccchhc
Confidence 89999998 57999998765 34899999999999999999995 468999999999999999999999999999876
Q ss_pred CCCCCc-------------------------ceeccccccccccCCccc-CCCCCCcccceeeHHHHHHHHhhC
Q 005278 566 GEGDDS-------------------------VIQTMTIATIGYMAPEYG-SEGIISPKSDVYSYGILLMETFTR 613 (704)
Q Consensus 566 ~~~~~~-------------------------~~~~~~~gt~~y~aPE~~-~~~~~~~~~Dv~s~Gv~l~el~tg 613 (704)
...... .......||+.|+|||++ ....++.++|||||||++|||++|
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~elltg 280 (458)
T 3rp9_A 207 DYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNM 280 (458)
T ss_dssp TSCTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHTT
T ss_pred cCccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHHh
Confidence 432211 122345789999999975 566799999999999999999993
No 191
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=100.00 E-value=1.4e-39 Score=344.28 Aligned_cols=262 Identities=11% Similarity=0.066 Sum_probs=186.7
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccc---hhhhHHHHHHHHHHHhc--CCCCCceEE-------eee
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL---ERASRSFDSECEILRSI--RHRNLIKII-------SNC 480 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l--~h~niv~l~-------~~~ 480 (704)
..+|...+.||+|+||.||+|+.. +|+.||||++.... ....+.+.+|+.+++.+ +||||++++ +++
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~ 140 (371)
T 3q60_A 61 ERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAV 140 (371)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEE
T ss_pred ceeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehhe
Confidence 345888999999999999999965 78999999998643 23445678886555555 699988865 333
Q ss_pred eeC-----------------CeEEEEEeccCCCCHHHHHhhCCCccCHHHH------HHHHHHHHHHHHHHHhcCCCCcE
Q 005278 481 CNI-----------------DFKALVLEFMPNGSLEKWLYSHNYFLGILER------LNIMIDVGLALEYLHHGHSTPMV 537 (704)
Q Consensus 481 ~~~-----------------~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~------~~i~~~i~~~l~~Lh~~h~~~iv 537 (704)
... ...++||||++ |+|.+++...+..+++..+ ..++.|++.||+||| +.+|+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~vk~~i~~qi~~aL~~LH---~~~iv 216 (371)
T 3q60_A 141 AVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQ---SKGLV 216 (371)
T ss_dssp EETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHH---HTTEE
T ss_pred ecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHHHHH---HCCCc
Confidence 322 33799999998 8999999865444566666 788899999999995 57899
Q ss_pred ecCCCCCCeeeCCCCcEEEeeeccceecCCCCCcceeccccccccccCCcccCC--CCCCcccceeeHHHHHHHHhhCCC
Q 005278 538 HCDLKPNNILLDENMTAHVSDFGISKLLGEGDDSVIQTMTIATIGYMAPEYGSE--GIISPKSDVYSYGILLMETFTRKK 615 (704)
Q Consensus 538 H~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~s~Gv~l~el~tg~~ 615 (704)
||||||+||+++.++.+||+|||+++..... .....+|+.|+|||++.+ ..++.++|||||||++|||+||+.
T Consensus 217 HrDikp~NIll~~~~~~kL~DFG~a~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~~ 291 (371)
T 3q60_A 217 HGHFTPDNLFIMPDGRLMLGDVSALWKVGTR-----GPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFL 291 (371)
T ss_dssp ETTCSGGGEEECTTSCEEECCGGGEEETTCE-----EEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSSC
T ss_pred cCcCCHHHEEECCCCCEEEEecceeeecCCC-----ccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999876321 224457799999999987 679999999999999999999999
Q ss_pred CCCccccccccHHHHHHhhcCCCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH--HHHHhH
Q 005278 616 PTNEIFIGEMSLKHWVKESLPDGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA--KLKKIK 693 (704)
Q Consensus 616 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~--~L~~~~ 693 (704)
||......... .+...............+....++..+.+++.+||+.||++||++.|+++ .++++.
T Consensus 292 Pf~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~ 360 (371)
T 3q60_A 292 PFGLVTPGIKG-----------SWKRPSLRVPGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRRRLLPLEAMETPEFLQLQ 360 (371)
T ss_dssp STTBCCTTCTT-----------CCCBCCTTSCCCCSCCCTTSSCCCHHHHHHHHHHTCSSTTTCCCHHHHTTSHHHHHHH
T ss_pred CCCCcCccccc-----------chhhhhhhhccccccchhhccCCCHHHHHHHHHHcCCChhhCCCHHHHhcCHHHHHHH
Confidence 99874322110 00000000000000011112244677889999999999999999999975 344444
Q ss_pred HH
Q 005278 694 EK 695 (704)
Q Consensus 694 ~~ 695 (704)
..
T Consensus 361 ~~ 362 (371)
T 3q60_A 361 NE 362 (371)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 192
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=100.00 E-value=7e-39 Score=329.31 Aligned_cols=249 Identities=23% Similarity=0.345 Sum_probs=205.2
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccc-hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEEe
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL-ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVLE 491 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 491 (704)
.+.|+..+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|+.++++++||||+++++++......++|||
T Consensus 21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 100 (303)
T 3a7i_A 21 EELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIME 100 (303)
T ss_dssp GGTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred HHHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEE
Confidence 356888999999999999999854 68999999987553 3345779999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCCCc
Q 005278 492 FMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGDDS 571 (704)
Q Consensus 492 ~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~~~ 571 (704)
|+++++|.+++... .+++..+..++.|++.|++||| +.+|+||||||+||+++.++.+||+|||++.......
T Consensus 101 ~~~~~~L~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~-- 173 (303)
T 3a7i_A 101 YLGGGSALDLLEPG--PLDETQIATILREILKGLDYLH---SEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQ-- 173 (303)
T ss_dssp CCTTEEHHHHHTTS--CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECBTTB--
T ss_pred eCCCCcHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCChheEEECCCCCEEEeecccceecCccc--
Confidence 99999999998753 4899999999999999999995 4689999999999999999999999999998765432
Q ss_pred ceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccchhhh
Q 005278 572 VIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLVREE 651 (704)
Q Consensus 572 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (704)
.......||+.|+|||++.+..++.++||||||+++|||++|+.||...... .....+....+.
T Consensus 174 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--~~~~~~~~~~~~-------------- 237 (303)
T 3a7i_A 174 IKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPM--KVLFLIPKNNPP-------------- 237 (303)
T ss_dssp CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH--HHHHHHHHSCCC--------------
T ss_pred cccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCHH--HHHHHhhcCCCC--------------
Confidence 1223456899999999999999999999999999999999999999763221 111111111110
Q ss_pred hhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 005278 652 QAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAK 688 (704)
Q Consensus 652 ~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~ 688 (704)
..+..++..+.+++..||+.||++||++.|+++.
T Consensus 238 ---~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~ 271 (303)
T 3a7i_A 238 ---TLEGNYSKPLKEFVEACLNKEPSFRPTAKELLKH 271 (303)
T ss_dssp ---CCCSSCCHHHHHHHHHHCCSSGGGSCCHHHHTTC
T ss_pred ---CCccccCHHHHHHHHHHcCCChhhCcCHHHHhhC
Confidence 0111334568899999999999999999999764
No 193
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=100.00 E-value=2.9e-39 Score=335.92 Aligned_cols=268 Identities=22% Similarity=0.268 Sum_probs=194.7
Q ss_pred HHhCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccch--hhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEE
Q 005278 412 RATNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQLE--RASRSFDSECEILRSIRHRNLIKIISNCCNIDFKAL 488 (704)
Q Consensus 412 ~~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 488 (704)
...++|.+.+.||+|+||+||+|+.. +++.||||++..... ...+.+.+|++++++++||||+++++++.+.+..++
T Consensus 31 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l 110 (329)
T 3gbz_A 31 TSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHL 110 (329)
T ss_dssp -CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEEE
T ss_pred cchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEEE
Confidence 34568999999999999999999854 789999999875432 234567899999999999999999999999999999
Q ss_pred EEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeC-----CCCcEEEeeeccce
Q 005278 489 VLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLD-----ENMTAHVSDFGISK 563 (704)
Q Consensus 489 v~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~-----~~~~~kl~Dfgla~ 563 (704)
||||++ |+|.+++..... +++..+..++.|++.||+|||. .+|+||||||+||+++ .++.+||+|||+++
T Consensus 111 v~e~~~-~~L~~~~~~~~~-~~~~~~~~i~~ql~~~l~~LH~---~~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~ 185 (329)
T 3gbz_A 111 IFEYAE-NDLKKYMDKNPD-VSMRVIKSFLYQLINGVNFCHS---RRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLAR 185 (329)
T ss_dssp EEECCS-EEHHHHHHHCTT-CCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEEC-----CCEEEECCTTHHH
T ss_pred EEecCC-CCHHHHHhhcCC-CCHHHHHHHHHHHHHHHHHHHh---CCEECCCCCHHHEEEecCCCCccceEEECcCCCcc
Confidence 999997 599999986643 8999999999999999999954 6899999999999994 55569999999998
Q ss_pred ecCCCCCcceeccccccccccCCcccCCC-CCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhh-cCCC--c
Q 005278 564 LLGEGDDSVIQTMTIATIGYMAPEYGSEG-IISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKES-LPDG--L 639 (704)
Q Consensus 564 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~-~~~~--~ 639 (704)
....... ......||+.|+|||++.+. .++.++|||||||++|||++|+.||......+ .+....... .+.. +
T Consensus 186 ~~~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-~~~~~~~~~~~~~~~~~ 262 (329)
T 3gbz_A 186 AFGIPIR--QFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSEID-QLFKIFEVLGLPDDTTW 262 (329)
T ss_dssp HHC-------------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHHHCCCCTTTS
T ss_pred ccCCccc--ccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCHHH-HHHHHHHHhCCCchhhh
Confidence 7643221 23345689999999998764 48999999999999999999999997632211 111111111 1110 0
Q ss_pred chhc--------cccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 640 TEVV--------DANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 640 ~~~~--------~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
.... .+..............++.++.+++.+||+.||++|||++|+++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 318 (329)
T 3gbz_A 263 PGVTALPDWKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALE 318 (329)
T ss_dssp TTGGGSTTCCTTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred hhhhhhhhhhhhhhhhccccHhhhcccccCHHHHHHHHHHccCChhhCCCHHHHhC
Confidence 0000 00000000111112224567889999999999999999999954
No 194
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=100.00 E-value=1.9e-38 Score=347.71 Aligned_cols=251 Identities=24% Similarity=0.283 Sum_probs=201.3
Q ss_pred HhCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccc--hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEE
Q 005278 413 ATNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL--ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALV 489 (704)
Q Consensus 413 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 489 (704)
..++|.+.+.||+|+||+||+|+.. +++.||||++.... ......+.+|++++++++||||+++++++.+....++|
T Consensus 20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 99 (486)
T 3mwu_A 20 FAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIV 99 (486)
T ss_dssp HHHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEE
Confidence 3457999999999999999999965 78999999986543 23456789999999999999999999999999999999
Q ss_pred EeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeC---CCCcEEEeeeccceecC
Q 005278 490 LEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLD---ENMTAHVSDFGISKLLG 566 (704)
Q Consensus 490 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~---~~~~~kl~Dfgla~~~~ 566 (704)
|||+++|+|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++ .++.+||+|||+++...
T Consensus 100 ~e~~~~~~L~~~~~~~~-~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~ 175 (486)
T 3mwu_A 100 GELYTGGELFDEIIKRK-RFSEHDAARIIKQVFSGITYMH---KHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQ 175 (486)
T ss_dssp ECCCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEESSSSTTCCEEECSCSCTTTBC
T ss_pred EEcCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCchHHEEEecCCCCCCEEEEECCcCeECC
Confidence 99999999999987654 4899999999999999999995 46899999999999995 55679999999998764
Q ss_pred CCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhcccc
Q 005278 567 EGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDAN 646 (704)
Q Consensus 567 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (704)
... ......||+.|+|||++.+ .++.++||||+||++|+|++|+.||.+....+ .+..........
T Consensus 176 ~~~---~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~-~~~~i~~~~~~~--------- 241 (486)
T 3mwu_A 176 QNT---KMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNEYD-ILKRVETGKYAF--------- 241 (486)
T ss_dssp CC-------CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHTCCCS---------
T ss_pred CCC---ccCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHhCCCCC---------
Confidence 332 2334579999999999875 58999999999999999999999997632111 111111100000
Q ss_pred chhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 647 LVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 647 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
..+....++..+.+++.+||+.||++|||+.|+++
T Consensus 242 ------~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~~~l~ 276 (486)
T 3mwu_A 242 ------DLPQWRTISDDAKDLIRKMLTFHPSLRITATQCLE 276 (486)
T ss_dssp ------CSGGGGGSCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred ------CCcccCCCCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 01112234567889999999999999999999976
No 195
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=100.00 E-value=2.4e-38 Score=332.50 Aligned_cols=269 Identities=22% Similarity=0.278 Sum_probs=202.2
Q ss_pred hCCCCccccccccCceEEEEEEE-CCCCEEEEEEeeccch--hhhHHHHHHHHHHHhcCCCCCceEEeeeeeC-------
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTL-FDGTNVAIKVFNLQLE--RASRSFDSECEILRSIRHRNLIKIISNCCNI------- 483 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~------- 483 (704)
.++|+..+.||+|+||.||+|+. .+|+.||||++..... .....+.+|+++++.++||||+++++++...
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 95 (351)
T 3mi9_A 16 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC 95 (351)
T ss_dssp GGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC-------
T ss_pred ccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccC
Confidence 35789999999999999999996 4799999999865432 2345788999999999999999999999773
Q ss_pred -CeEEEEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccc
Q 005278 484 -DFKALVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGIS 562 (704)
Q Consensus 484 -~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla 562 (704)
+..++||||+++ ++.+.+......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++
T Consensus 96 ~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a 171 (351)
T 3mi9_A 96 KGSIYLVFDFCEH-DLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIH---RNKILHRDMKAANVLITRDGVLKLADFGLA 171 (351)
T ss_dssp -CEEEEEEECCSE-EHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTC
T ss_pred CceEEEEEeccCC-CHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCHHHEEEcCCCCEEEccchhc
Confidence 468999999975 888888876667999999999999999999995 468999999999999999999999999999
Q ss_pred eecCCCCC--cceeccccccccccCCcccCC-CCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHH--hhcCC
Q 005278 563 KLLGEGDD--SVIQTMTIATIGYMAPEYGSE-GIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVK--ESLPD 637 (704)
Q Consensus 563 ~~~~~~~~--~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~--~~~~~ 637 (704)
+.+..... ........||+.|+|||++.+ ..++.++|||||||++|||+||+.||.+..... ....... ...+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-~~~~i~~~~~~~~~ 250 (351)
T 3mi9_A 172 RAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQH-QLALISQLCGSITP 250 (351)
T ss_dssp EECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCCCCT
T ss_pred ccccccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCChHH-HHHHHHHHhCCCCh
Confidence 87753322 222344578999999998875 558999999999999999999999997632211 1111111 11111
Q ss_pred C-cchhccccch----------hhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 638 G-LTEVVDANLV----------REEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 638 ~-~~~~~~~~~~----------~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
. +......... ............+..+.+++.+||+.||++|||++|+++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 311 (351)
T 3mi9_A 251 EVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALN 311 (351)
T ss_dssp TTSTTGGGCGGGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred hhccccccchhhcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhC
Confidence 1 1111000000 000000011112456889999999999999999999965
No 196
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=100.00 E-value=9.5e-39 Score=337.08 Aligned_cols=274 Identities=21% Similarity=0.248 Sum_probs=201.3
Q ss_pred chHHHHHHhCCCCccccccccCceEEEEEEECCCCEEEEEEeeccch-----------hhhHHHHHHHHHHHhcCCCCCc
Q 005278 406 SYLDIQRATNGFNECNLLGTGSFGSVYKGTLFDGTNVAIKVFNLQLE-----------RASRSFDSECEILRSIRHRNLI 474 (704)
Q Consensus 406 ~~~~~~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~-----------~~~~~~~~e~~~l~~l~h~niv 474 (704)
...++....++|...+.||+|+||.||+|...+|+.||||++..... ...+.+.+|++++++++||||+
T Consensus 13 ~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv 92 (362)
T 3pg1_A 13 LIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNIL 92 (362)
T ss_dssp HHHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred HHHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCcc
Confidence 34577888899999999999999999999988899999999864321 1236789999999999999999
Q ss_pred eEEeeeee-----CCeEEEEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeC
Q 005278 475 KIISNCCN-----IDFKALVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLD 549 (704)
Q Consensus 475 ~l~~~~~~-----~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~ 549 (704)
++++++.. ....++||||++ |+|.+++......+++..+..++.|++.||+|||. .+|+||||||+||+++
T Consensus 93 ~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dlkp~NIl~~ 168 (362)
T 3pg1_A 93 GLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQRIVISPQHIQYFMYHILLGLHVLHE---AGVVHRDLHPGNILLA 168 (362)
T ss_dssp CCSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEEC
T ss_pred ceeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHH---CcCEecCCChHHEEEc
Confidence 99999844 336799999997 69999998777779999999999999999999964 6899999999999999
Q ss_pred CCCcEEEeeeccceecCCCCCcceeccccccccccCCcccCC-CCCCcccceeeHHHHHHHHhhCCCCCCccccccccHH
Q 005278 550 ENMTAHVSDFGISKLLGEGDDSVIQTMTIATIGYMAPEYGSE-GIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLK 628 (704)
Q Consensus 550 ~~~~~kl~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~ 628 (704)
.++.+||+|||++....... ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||.+....+ .+.
T Consensus 169 ~~~~~kl~Dfg~~~~~~~~~---~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~-~~~ 244 (362)
T 3pg1_A 169 DNNDITICDFNLAREDTADA---NKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTFYN-QLN 244 (362)
T ss_dssp TTCCEEECCTTC------------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHH
T ss_pred CCCCEEEEecCccccccccc---ccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCCCHHH-HHH
Confidence 99999999999998543322 2334568999999998876 678999999999999999999999997632111 111
Q ss_pred HHHHhhcCCCcch-----------hccccchh--hhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 629 HWVKESLPDGLTE-----------VVDANLVR--EEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 629 ~~~~~~~~~~~~~-----------~~~~~~~~--~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
............. ........ ..........++..+.+++.+||+.||++|||+.|+++
T Consensus 245 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 316 (362)
T 3pg1_A 245 KIVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQALR 316 (362)
T ss_dssp HHHHHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHcCCCChHHhhhccchhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCChhhCCCHHHHHc
Confidence 1111110000000 00000000 00001112234567889999999999999999999964
No 197
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=100.00 E-value=9.7e-39 Score=323.64 Aligned_cols=247 Identities=26% Similarity=0.432 Sum_probs=194.5
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccch---hhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEE
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQLE---RASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALV 489 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 489 (704)
.++|.+.+.||+|+||.||+|+.. +|+.||||++..... ...+.+.+|+++++.++||||+++++++...+..++|
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 89 (276)
T 2h6d_A 10 IGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMV 89 (276)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred eccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEE
Confidence 468899999999999999999975 799999999875431 2345788999999999999999999999999999999
Q ss_pred EeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCC
Q 005278 490 LEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGD 569 (704)
Q Consensus 490 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~ 569 (704)
|||+++++|.+++.... .+++..+..++.|++.|++|||. .+|+||||||+||+++.++.+||+|||++.......
T Consensus 90 ~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~ 165 (276)
T 2h6d_A 90 MEYVSGGELFDYICKHG-RVEEMEARRLFQQILSAVDYCHR---HMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGE 165 (276)
T ss_dssp EECCCSCBHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHHH---HCSSCCCCCGGGEEECTTSCEEECCCCGGGCCCC--
T ss_pred EeccCCCcHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHH---CCCccCCCChhhEEECCCCCEEEeecccccccCCCc
Confidence 99999999999997654 38899999999999999999964 689999999999999999999999999998764432
Q ss_pred CcceeccccccccccCCcccCCCCC-CcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccch
Q 005278 570 DSVIQTMTIATIGYMAPEYGSEGII-SPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLV 648 (704)
Q Consensus 570 ~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (704)
......|++.|+|||.+.+..+ +.++||||||+++|+|++|+.||...... .....+....
T Consensus 166 ---~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~--~~~~~~~~~~------------- 227 (276)
T 2h6d_A 166 ---FLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVP--TLFKKIRGGV------------- 227 (276)
T ss_dssp --------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHCC-------------
T ss_pred ---ceecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCcHH--HHHHHhhcCc-------------
Confidence 1234468999999999887765 68999999999999999999999753211 1111111100
Q ss_pred hhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 649 REEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 649 ~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
...+..++..+.+++.+|++.||++||++.|+++
T Consensus 228 -----~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~l~ 261 (276)
T 2h6d_A 228 -----FYIPEYLNRSVATLLMHMLQVDPLKRATIKDIRE 261 (276)
T ss_dssp -----CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred -----ccCchhcCHHHHHHHHHHccCChhhCCCHHHHHh
Confidence 0011123456888999999999999999999976
No 198
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=100.00 E-value=8.4e-39 Score=326.34 Aligned_cols=244 Identities=22% Similarity=0.299 Sum_probs=197.4
Q ss_pred HhCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccc--hhhhHHHHHHHHHHHhc-CCCCCceEEeeeeeCCeEEE
Q 005278 413 ATNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL--ERASRSFDSECEILRSI-RHRNLIKIISNCCNIDFKAL 488 (704)
Q Consensus 413 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~l 488 (704)
..++|+..+.||+|+||.||+|+.. +++.||||++.... ......+.+|+..+..+ +||||+++++++.+.+..++
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~l 88 (289)
T 1x8b_A 9 YTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLI 88 (289)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEE
T ss_pred ccchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEE
Confidence 3467899999999999999999975 79999999987543 33456788999999999 99999999999999999999
Q ss_pred EEeccCCCCHHHHHhhC---CCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCC--------------
Q 005278 489 VLEFMPNGSLEKWLYSH---NYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDEN-------------- 551 (704)
Q Consensus 489 v~e~~~~gsL~~~l~~~---~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~-------------- 551 (704)
||||+++|+|.+++... ...+++..++.++.|++.||+||| +.+|+||||||+||+++.+
T Consensus 89 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~ 165 (289)
T 1x8b_A 89 QNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIH---SMSLVHMDIKPSNIFISRTSIPNAASEEGDEDD 165 (289)
T ss_dssp EEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEC----------------
T ss_pred EEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHH---hCCEeecCCCHHHEEEcCCCCCccccccccccc
Confidence 99999999999999854 245899999999999999999995 4689999999999999844
Q ss_pred -----CcEEEeeeccceecCCCCCcceeccccccccccCCcccCCC-CCCcccceeeHHHHHHHHhhCCCCCCccccccc
Q 005278 552 -----MTAHVSDFGISKLLGEGDDSVIQTMTIATIGYMAPEYGSEG-IISPKSDVYSYGILLMETFTRKKPTNEIFIGEM 625 (704)
Q Consensus 552 -----~~~kl~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~ 625 (704)
..+||+|||.+....... ...||+.|+|||++.+. .++.++|||||||++|||++|..|+... .
T Consensus 166 ~~~~~~~~kl~Dfg~~~~~~~~~------~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~----~ 235 (289)
T 1x8b_A 166 WASNKVMFKIGDLGHVTRISSPQ------VEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNG----D 235 (289)
T ss_dssp ----CCCEEECCCTTCEETTCSC------CCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSS----H
T ss_pred ccCCceEEEEcccccccccCCcc------ccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcch----h
Confidence 479999999998765422 23589999999998765 5668999999999999999998876431 1
Q ss_pred cHHHHHHhhcCCCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 626 SLKHWVKESLPDGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
..........+ ..+..++..+.+++.+||+.||++||++.|+++
T Consensus 236 ~~~~~~~~~~~------------------~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 279 (289)
T 1x8b_A 236 QWHEIRQGRLP------------------RIPQVLSQEFTELLKVMIHPDPERRPSAMALVK 279 (289)
T ss_dssp HHHHHHTTCCC------------------CCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHHcCCCC------------------CCCcccCHHHHHHHHHHhCCCcccCCCHHHHhh
Confidence 11111111000 011133567889999999999999999999964
No 199
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=100.00 E-value=1e-38 Score=332.47 Aligned_cols=260 Identities=18% Similarity=0.278 Sum_probs=199.0
Q ss_pred CCCCccccccccCceEEEEEEE-CCCCEEEEEEeeccchhhhHHHHHHHHHHHhcC-CCCCceEEeeeee--CCeEEEEE
Q 005278 415 NGFNECNLLGTGSFGSVYKGTL-FDGTNVAIKVFNLQLERASRSFDSECEILRSIR-HRNLIKIISNCCN--IDFKALVL 490 (704)
Q Consensus 415 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~--~~~~~lv~ 490 (704)
++|+..+.||+|+||.||+|+. .+++.||||++... ..+.+.+|++++++++ ||||+++++++.+ ....++||
T Consensus 36 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv~ 112 (330)
T 3nsz_A 36 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV---KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVF 112 (330)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC---CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEEE
T ss_pred CceEEEEEecccCCeEEEEEEECCCCcEEEEEEeccc---chHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEEE
Confidence 6789999999999999999985 57899999998643 3467899999999997 9999999999988 66789999
Q ss_pred eccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCC-cEEEeeeccceecCCCC
Q 005278 491 EFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENM-TAHVSDFGISKLLGEGD 569 (704)
Q Consensus 491 e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~-~~kl~Dfgla~~~~~~~ 569 (704)
||+++++|.+++.. +++..+..++.|++.||+||| +.+|+||||||+||+++.++ .+||+|||+++......
T Consensus 113 e~~~~~~l~~~~~~----~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~ 185 (330)
T 3nsz_A 113 EHVNNTDFKQLYQT----LTDYDIRFYMYEILKALDYCH---SMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQ 185 (330)
T ss_dssp ECCCCCCHHHHGGG----CCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTTEEEECCCTTCEECCTTC
T ss_pred eccCchhHHHHHHh----CCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCCCC
Confidence 99999999998853 788899999999999999995 57899999999999999776 89999999998765433
Q ss_pred CcceeccccccccccCCcccCC-CCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHH------------HHhhcC
Q 005278 570 DSVIQTMTIATIGYMAPEYGSE-GIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHW------------VKESLP 636 (704)
Q Consensus 570 ~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~------------~~~~~~ 636 (704)
. .....||+.|+|||++.+ ..++.++|||||||++|||++|+.||.........+... ......
T Consensus 186 ~---~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 262 (330)
T 3nsz_A 186 E---YNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNI 262 (330)
T ss_dssp C---CCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTC
T ss_pred c---cccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHHhcCCchhhhHHHHhcc
Confidence 2 234568999999998876 678999999999999999999999995422211111111 111000
Q ss_pred C---Ccchhccccchh---hhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 637 D---GLTEVVDANLVR---EEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 637 ~---~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
. ............ ..........++..+.+++.+||+.||++|||++|+++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~ 319 (330)
T 3nsz_A 263 ELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME 319 (330)
T ss_dssp CCCTHHHHHHCCCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred ccccchhhhhhhccccchhhhccccccccCCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence 0 000000000000 00001112234677899999999999999999999954
No 200
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=100.00 E-value=5.3e-39 Score=333.65 Aligned_cols=261 Identities=20% Similarity=0.232 Sum_probs=204.3
Q ss_pred cchHHHHHHhCCCCcc-ccccccCceEEEEEEEC-CCCEEEEEEeeccch--hhhHHHHHHHHHHHhcC-CCCCceEEee
Q 005278 405 TSYLDIQRATNGFNEC-NLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQLE--RASRSFDSECEILRSIR-HRNLIKIISN 479 (704)
Q Consensus 405 ~~~~~~~~~~~~~~~~-~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~-h~niv~l~~~ 479 (704)
..+.......+.|.+. +.||+|+||.||+|+.. +++.||+|++..... .....+.+|+.+++.++ ||||++++++
T Consensus 18 ~~~~~~~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~ 97 (327)
T 3lm5_A 18 LYFQSMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEV 97 (327)
T ss_dssp CCSBCHHHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEE
T ss_pred hHHHHHHhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEE
Confidence 3344455666777777 88999999999999865 699999999876442 23567899999999994 6999999999
Q ss_pred eeeCCeEEEEEeccCCCCHHHHHhhC-CCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCC---CCcEE
Q 005278 480 CCNIDFKALVLEFMPNGSLEKWLYSH-NYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDE---NMTAH 555 (704)
Q Consensus 480 ~~~~~~~~lv~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~---~~~~k 555 (704)
+.+.+..++||||+++|+|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||+++. ++.+|
T Consensus 98 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH---~~givH~Dikp~NIl~~~~~~~~~~k 174 (327)
T 3lm5_A 98 YENTSEIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLH---QNNIVHLDLKPQNILLSSIYPLGDIK 174 (327)
T ss_dssp EECSSEEEEEEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEESCBTTBCCEE
T ss_pred EEeCCeEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---HCCeecCcCChHHEEEecCCCCCcEE
Confidence 99999999999999999999998643 456899999999999999999995 468999999999999997 78999
Q ss_pred EeeeccceecCCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhc
Q 005278 556 VSDFGISKLLGEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESL 635 (704)
Q Consensus 556 l~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~ 635 (704)
|+|||+++...... ......||+.|+|||++.+..++.++||||||+++|||++|+.||......+. .... ....
T Consensus 175 L~Dfg~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~-~~~i-~~~~ 249 (327)
T 3lm5_A 175 IVDFGMSRKIGHAC---ELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQET-YLNI-SQVN 249 (327)
T ss_dssp ECCGGGCEEC------------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH-HHHH-HHTC
T ss_pred EeeCccccccCCcc---ccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCchHH-HHHH-Hhcc
Confidence 99999998764332 12345799999999999999999999999999999999999999976322111 1111 1000
Q ss_pred CCCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 636 PDGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
.. . .......++..+.+++.+||+.||++||+++|+++
T Consensus 250 ~~-~-------------~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~ll~ 287 (327)
T 3lm5_A 250 VD-Y-------------SEETFSSVSQLATDFIQSLLVKNPEKRPTAEICLS 287 (327)
T ss_dssp CC-C-------------CTTTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred cc-c-------------CchhhcccCHHHHHHHHHHcCCChhhCcCHHHHhC
Confidence 00 0 00111234567889999999999999999999954
No 201
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=100.00 E-value=4.8e-39 Score=328.39 Aligned_cols=251 Identities=22% Similarity=0.254 Sum_probs=187.5
Q ss_pred hCCCCccccccccCceEEEEEEE-CCCCEEEEEEeeccc--hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEE
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTL-FDGTNVAIKVFNLQL--ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVL 490 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 490 (704)
.++|+..+.||+|+||.||+|+. .+++.||||++.... ....+.+.++...++.++||||+++++++.+.+..++||
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~ 85 (290)
T 3fme_A 6 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICM 85 (290)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEEE
T ss_pred HHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEEE
Confidence 46789999999999999999996 478999999987543 222334555566688889999999999999999999999
Q ss_pred eccCCCCHHHHHhh---CCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCC
Q 005278 491 EFMPNGSLEKWLYS---HNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGE 567 (704)
Q Consensus 491 e~~~~gsL~~~l~~---~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~ 567 (704)
||++ |+|.+++.. ....+++..+..++.|++.|++|||.. .+|+||||||+||+++.++.+||+|||++.....
T Consensus 86 e~~~-~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~--~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~ 162 (290)
T 3fme_A 86 ELMD-TSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSK--LSVIHRDVKPSNVLINALGQVKMCDFGISGYLVD 162 (290)
T ss_dssp ECCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHH--SCCCCCCCSGGGCEECTTCCEEBCCC--------
T ss_pred ehhc-cchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhc--CCeecCCCCHHHEEECCCCCEEEeecCCcccccc
Confidence 9997 588888763 456699999999999999999999642 2899999999999999999999999999987643
Q ss_pred CCCcceeccccccccccCCccc----CCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhc
Q 005278 568 GDDSVIQTMTIATIGYMAPEYG----SEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVV 643 (704)
Q Consensus 568 ~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (704)
.. ......||+.|+|||++ .+..++.++||||+|+++|||++|+.||..................+.
T Consensus 163 ~~---~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~------ 233 (290)
T 3fme_A 163 DV---AKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVVEEPSPQ------ 233 (290)
T ss_dssp ----------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHHHHHHHHSCCCC------
T ss_pred cc---cccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCchHHHHHHHhccCCCC------
Confidence 22 22334699999999985 566789999999999999999999999975322222222222211110
Q ss_pred cccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 644 DANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
.....++..+.+++.+|++.||++|||+.|+++
T Consensus 234 -----------~~~~~~~~~~~~li~~~l~~~p~~Rpt~~e~l~ 266 (290)
T 3fme_A 234 -----------LPADKFSAEFVDFTSQCLKKNSKERPTYPELMQ 266 (290)
T ss_dssp -----------CCTTTSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred -----------cccccCCHHHHHHHHHHhhcChhhCcCHHHHHh
Confidence 001133566889999999999999999999976
No 202
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=100.00 E-value=4.2e-39 Score=337.98 Aligned_cols=264 Identities=22% Similarity=0.263 Sum_probs=205.0
Q ss_pred hCCCCccccccccCceEEEEEEECCCCEEEEEEeeccchhh-----------------hHHHHHHHHHHHhcCCCCCceE
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLFDGTNVAIKVFNLQLERA-----------------SRSFDSECEILRSIRHRNLIKI 476 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~-----------------~~~~~~e~~~l~~l~h~niv~l 476 (704)
.++|...+.||+|+||.||+|+. +++.||||++....... .+.+.+|++++++++||||+++
T Consensus 30 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~ 108 (348)
T 2pml_X 30 INDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTC 108 (348)
T ss_dssp ETTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred cCceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceE
Confidence 46899999999999999999998 89999999987543211 1789999999999999999999
Q ss_pred EeeeeeCCeEEEEEeccCCCCHHHH------HhhC-CCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeC
Q 005278 477 ISNCCNIDFKALVLEFMPNGSLEKW------LYSH-NYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLD 549 (704)
Q Consensus 477 ~~~~~~~~~~~lv~e~~~~gsL~~~------l~~~-~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~ 549 (704)
++++.+.+..++||||+++|+|.++ +... ...+++..+..++.|++.|++|||. +.+|+||||||+||+++
T Consensus 109 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~--~~~i~H~dl~p~Nil~~ 186 (348)
T 2pml_X 109 EGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHN--EKNICHRDVKPSNILMD 186 (348)
T ss_dssp SEEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHHH--TSCEECCCCCGGGEEEC
T ss_pred EEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHhc--cCCEeecCCChHhEEEc
Confidence 9999999999999999999999998 5542 4568999999999999999999964 27899999999999999
Q ss_pred CCCcEEEeeeccceecCCCCCcceeccccccccccCCcccCCC-CCCc-ccceeeHHHHHHHHhhCCCCCCccccccccH
Q 005278 550 ENMTAHVSDFGISKLLGEGDDSVIQTMTIATIGYMAPEYGSEG-IISP-KSDVYSYGILLMETFTRKKPTNEIFIGEMSL 627 (704)
Q Consensus 550 ~~~~~kl~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~-~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~ 627 (704)
.++.+||+|||.+...... ......||+.|+|||++.+. .++. ++||||||+++|||++|+.||....... ..
T Consensus 187 ~~~~~kl~dfg~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-~~ 261 (348)
T 2pml_X 187 KNGRVKLSDFGESEYMVDK----KIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISLV-EL 261 (348)
T ss_dssp TTSCEEECCCTTCEECBTT----EECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSCSH-HH
T ss_pred CCCcEEEeccccccccccc----cccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCcHH-HH
Confidence 9999999999999876432 23445799999999998877 6666 9999999999999999999997643211 11
Q ss_pred HHHHHhhcCCC---cchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 628 KHWVKESLPDG---LTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 628 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
...+....... ......+.... ........++..+.+++.+||+.||++||++.|+++
T Consensus 262 ~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~ 322 (348)
T 2pml_X 262 FNNIRTKNIEYPLDRNHFLYPLTNK--KSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALK 322 (348)
T ss_dssp HHHHTSCCCCCCCSSSSSTTTTCC----------CCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred HHHHhccCcCCccchhhhhcccccc--ccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 11111110000 00000000000 000111234567899999999999999999999976
No 203
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=6.2e-39 Score=336.69 Aligned_cols=254 Identities=23% Similarity=0.257 Sum_probs=200.8
Q ss_pred hCCCCccccccccCceEEEEEEE----CCCCEEEEEEeeccc----hhhhHHHHHHHHHHHhc-CCCCCceEEeeeeeCC
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTL----FDGTNVAIKVFNLQL----ERASRSFDSECEILRSI-RHRNLIKIISNCCNID 484 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~----~~~~~vavK~~~~~~----~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~ 484 (704)
.++|+..+.||+|+||.||+|+. .+++.||||+++... ....+.+.+|+++++++ +||||+++++++....
T Consensus 53 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~ 132 (355)
T 1vzo_A 53 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTET 132 (355)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETT
T ss_pred ccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCc
Confidence 35789999999999999999986 368999999986532 22345677899999999 6999999999999999
Q ss_pred eEEEEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeecccee
Q 005278 485 FKALVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKL 564 (704)
Q Consensus 485 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~ 564 (704)
..++||||+++|+|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.
T Consensus 133 ~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~ 208 (355)
T 1vzo_A 133 KLHLILDYINGGELFTHLSQRE-RFTEHEVQIYVGEIVLALEHLH---KLGIIYRDIKLENILLDSNGHVVLTDFGLSKE 208 (355)
T ss_dssp EEEEEECCCCSCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEESCSSEEEE
T ss_pred eEEEEeecCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCcEEEeeCCCCee
Confidence 9999999999999999998654 4899999999999999999995 46899999999999999999999999999987
Q ss_pred cCCCCCcceeccccccccccCCcccCC--CCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchh
Q 005278 565 LGEGDDSVIQTMTIATIGYMAPEYGSE--GIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEV 642 (704)
Q Consensus 565 ~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (704)
...... .......||+.|+|||++.+ ..++.++|||||||++|||++|+.||...... .....+.......
T Consensus 209 ~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~-~~~~~~~~~~~~~----- 281 (355)
T 1vzo_A 209 FVADET-ERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEK-NSQAEISRRILKS----- 281 (355)
T ss_dssp CCGGGG-GGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSC-CCHHHHHHHHHHC-----
T ss_pred cccCCC-CcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCcc-chHHHHHHHHhcc-----
Confidence 643221 12234579999999999875 44788999999999999999999999753222 1222221111100
Q ss_pred ccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCC-----CHHHHHHH
Q 005278 643 VDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRV-----SMKDAAAK 688 (704)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rp-----t~~ev~~~ 688 (704)
....+..++..+.+++.+||+.||++|| ++.|+++.
T Consensus 282 ----------~~~~~~~~~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~h 322 (355)
T 1vzo_A 282 ----------EPPYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEH 322 (355)
T ss_dssp ----------CCCCCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTS
T ss_pred ----------CCCCCcccCHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHcC
Confidence 0011223456678899999999999999 89998654
No 204
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=100.00 E-value=2.7e-39 Score=332.54 Aligned_cols=263 Identities=24% Similarity=0.314 Sum_probs=186.5
Q ss_pred HHHhCCCCccccccccCceEEEEEEE-CCCCEEEEEEeeccc-hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEE
Q 005278 411 QRATNGFNECNLLGTGSFGSVYKGTL-FDGTNVAIKVFNLQL-ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKAL 488 (704)
Q Consensus 411 ~~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 488 (704)
....++|...+.||+|+||.||+|+. .+++.||||++.... ....+.+.+|++++++++||||+++++++...+..++
T Consensus 11 ~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 90 (303)
T 2vwi_A 11 SINRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWL 90 (303)
T ss_dssp --CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSSCEEE
T ss_pred ccchhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEE
Confidence 34467899999999999999999985 478999999986543 2345678899999999999999999999999999999
Q ss_pred EEeccCCCCHHHHHhh-------CCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeecc
Q 005278 489 VLEFMPNGSLEKWLYS-------HNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGI 561 (704)
Q Consensus 489 v~e~~~~gsL~~~l~~-------~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgl 561 (704)
||||+++|+|.+++.. ....+++..+..++.|++.|++||| +.+|+||||||+||+++.++.+||+|||+
T Consensus 91 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~ 167 (303)
T 2vwi_A 91 VMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLH---KNGQIHRDVKAGNILLGEDGSVQIADFGV 167 (303)
T ss_dssp EEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTCCEEECCCHH
T ss_pred EehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHH---hCCCCCCCCChhhEEEcCCCCEEEEeccc
Confidence 9999999999999974 2445899999999999999999995 46899999999999999999999999999
Q ss_pred ceecCCCCC---cceeccccccccccCCcccCC-CCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCC
Q 005278 562 SKLLGEGDD---SVIQTMTIATIGYMAPEYGSE-GIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPD 637 (704)
Q Consensus 562 a~~~~~~~~---~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~ 637 (704)
+........ ........||+.|+|||++.+ ..++.++||||||+++|||++|+.||........ ........+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~--~~~~~~~~~~ 245 (303)
T 2vwi_A 168 SAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMKV--LMLTLQNDPP 245 (303)
T ss_dssp HHHCC---------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGGH--HHHHHTSSCC
T ss_pred hheeccCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCchhhH--HHHHhccCCC
Confidence 977643321 112234468999999998865 5689999999999999999999999976432221 1111111111
Q ss_pred Cc-chhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 638 GL-TEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 638 ~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
.. ....+. .....++..+.+++.+||+.||++||++.|+++
T Consensus 246 ~~~~~~~~~---------~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 287 (303)
T 2vwi_A 246 SLETGVQDK---------EMLKKYGKSFRKMISLCLQKDPEKRPTAAELLR 287 (303)
T ss_dssp CTTC--------------CCCCCCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred ccccccccc---------hhhhhhhHHHHHHHHHHccCChhhCcCHHHHhh
Confidence 11 000011 111233457889999999999999999999976
No 205
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=100.00 E-value=2.8e-39 Score=328.14 Aligned_cols=255 Identities=22% Similarity=0.309 Sum_probs=201.0
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccc--hhhhHHHHHHHHHHHhcCCCCCceEEeeeee--CCeEEE
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL--ERASRSFDSECEILRSIRHRNLIKIISNCCN--IDFKAL 488 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~--~~~~~l 488 (704)
.++|+..+.||+|+||.||+|+.. +++.||+|.+.... ....+.+.+|++++++++||||+++++++.+ ....++
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l 84 (279)
T 2w5a_A 5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYI 84 (279)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEE
T ss_pred hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEE
Confidence 467889999999999999999865 68999999987543 3345678999999999999999999998754 568899
Q ss_pred EEeccCCCCHHHHHhhC---CCccCHHHHHHHHHHHHHHHHHHHhcC--CCCcEecCCCCCCeeeCCCCcEEEeeeccce
Q 005278 489 VLEFMPNGSLEKWLYSH---NYFLGILERLNIMIDVGLALEYLHHGH--STPMVHCDLKPNNILLDENMTAHVSDFGISK 563 (704)
Q Consensus 489 v~e~~~~gsL~~~l~~~---~~~~~~~~~~~i~~~i~~~l~~Lh~~h--~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~ 563 (704)
||||+++|+|.+++... ...+++..++.++.|++.|++|||... ..+|+||||||+||+++.++.+||+|||+++
T Consensus 85 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg~~~ 164 (279)
T 2w5a_A 85 VMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLAR 164 (279)
T ss_dssp EEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHC------CCCCCSGGGEEECSSSCEEECCCCHHH
T ss_pred EEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCeeEEeccchhhEEEcCCCCEEEecCchhe
Confidence 99999999999999743 345899999999999999999997632 1339999999999999999999999999998
Q ss_pred ecCCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhc
Q 005278 564 LLGEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVV 643 (704)
Q Consensus 564 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (704)
...... .......||+.|+|||++.+..++.++||||||+++|||++|+.||...... .....+......
T Consensus 165 ~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--~~~~~i~~~~~~------ 234 (279)
T 2w5a_A 165 ILNHDT--SFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQK--ELAGKIREGKFR------ 234 (279)
T ss_dssp HC---C--HHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHTCCC------
T ss_pred eecccc--ccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccCHH--HHHHHHhhcccc------
Confidence 764322 1123346899999999999889999999999999999999999999764211 111111111000
Q ss_pred cccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 005278 644 DANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKL 689 (704)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L 689 (704)
..+..++..+.+++.+||+.||++||++.|+++.+
T Consensus 235 -----------~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~~ 269 (279)
T 2w5a_A 235 -----------RIPYRYSDELNEIITRMLNLKDYHRPSVEEILENP 269 (279)
T ss_dssp -----------CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTST
T ss_pred -----------cCCcccCHHHHHHHHHHcCCCcccCCCHHHHHhCh
Confidence 11123456788999999999999999999998754
No 206
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=100.00 E-value=1.9e-38 Score=341.97 Aligned_cols=200 Identities=26% Similarity=0.352 Sum_probs=166.8
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccc--hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeC-----Ce
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL--ERASRSFDSECEILRSIRHRNLIKIISNCCNI-----DF 485 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~-----~~ 485 (704)
.++|...+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|++++++++||||+++++++... ..
T Consensus 25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~ 104 (432)
T 3n9x_A 25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDE 104 (432)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCe
Confidence 468999999999999999999864 68899999997532 33456789999999999999999999999776 57
Q ss_pred EEEEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceec
Q 005278 486 KALVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLL 565 (704)
Q Consensus 486 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~ 565 (704)
.++||||++ |+|.+++... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+|+..
T Consensus 105 ~~lv~e~~~-~~L~~~~~~~-~~l~~~~~~~i~~qil~aL~~LH---~~givHrDlkp~NILl~~~~~~kL~DFGla~~~ 179 (432)
T 3n9x_A 105 LYIVLEIAD-SDLKKLFKTP-IFLTEEHIKTILYNLLLGENFIH---ESGIIHRDLKPANCLLNQDCSVKVCDFGLARTI 179 (432)
T ss_dssp EEEEEECCS-EEHHHHHHSS-CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred EEEEEecCC-cCHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHH---HCCCCCCCCCHHHeEECCCCCEEEccCCCcccc
Confidence 899999986 5999999764 34899999999999999999995 468999999999999999999999999999987
Q ss_pred CCCCCc--------------------ceeccccccccccCCccc-CCCCCCcccceeeHHHHHHHHhhCCCCCC
Q 005278 566 GEGDDS--------------------VIQTMTIATIGYMAPEYG-SEGIISPKSDVYSYGILLMETFTRKKPTN 618 (704)
Q Consensus 566 ~~~~~~--------------------~~~~~~~gt~~y~aPE~~-~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~ 618 (704)
...... .......||+.|+|||++ ....++.++||||+||++|||++|..||.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~ 253 (432)
T 3n9x_A 180 NSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSHI 253 (432)
T ss_dssp -------------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTTC
T ss_pred cccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhcccccc
Confidence 543211 123456799999999985 56679999999999999999998766654
No 207
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=100.00 E-value=2.1e-38 Score=326.09 Aligned_cols=251 Identities=22% Similarity=0.285 Sum_probs=198.7
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccc----hhhhHHHHHHHHHHHhcCCCCCceEEeeee--eCCeE
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL----ERASRSFDSECEILRSIRHRNLIKIISNCC--NIDFK 486 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~----~~~~~~~~~e~~~l~~l~h~niv~l~~~~~--~~~~~ 486 (704)
.++|.+.+.||+|+||.||+|... +++.||+|++.... ....+.+.+|++++++++||||+++++++. +....
T Consensus 4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 83 (305)
T 2wtk_C 4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKM 83 (305)
T ss_dssp -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CE
T ss_pred ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeE
Confidence 468999999999999999999964 68999999987543 234567899999999999999999999984 45678
Q ss_pred EEEEeccCCCCHHHHHhh-CCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceec
Q 005278 487 ALVLEFMPNGSLEKWLYS-HNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLL 565 (704)
Q Consensus 487 ~lv~e~~~~gsL~~~l~~-~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~ 565 (704)
++||||+++| +.+++.. ....+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++...
T Consensus 84 ~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH---~~~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~~ 159 (305)
T 2wtk_C 84 YMVMEYCVCG-MQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLH---SQGIVHKDIKPGNLLLTTGGTLKISALGVAEAL 159 (305)
T ss_dssp EEEEECCSEE-HHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred EEEehhccCC-HHHHHHhCcccccCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCcccEEEcCCCcEEeecccccccc
Confidence 9999999876 7777764 3456899999999999999999995 468999999999999999999999999999887
Q ss_pred CCCCCcceeccccccccccCCcccCCCC--CCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhc
Q 005278 566 GEGDDSVIQTMTIATIGYMAPEYGSEGI--ISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVV 643 (704)
Q Consensus 566 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (704)
.............||+.|+|||++.+.. ++.++||||||+++|||++|+.||.... ...........
T Consensus 160 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~-----~~~~~~~i~~~------ 228 (305)
T 2wtk_C 160 HPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDN-----IYKLFENIGKG------ 228 (305)
T ss_dssp CTTCSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSS-----HHHHHHHHHHC------
T ss_pred CccccccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCch-----HHHHHHHHhcC------
Confidence 5443333444557999999999887643 4779999999999999999999997521 11111110000
Q ss_pred cccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 005278 644 DANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAK 688 (704)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~ 688 (704)
....+..++..+.+++.+||+.||++||++.|+++.
T Consensus 229 ---------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~ 264 (305)
T 2wtk_C 229 ---------SYAIPGDCGPPLSDLLKGMLEYEPAKRFSIRQIRQH 264 (305)
T ss_dssp ---------CCCCCSSSCHHHHHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred ---------CCCCCCccCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence 001112345678899999999999999999999753
No 208
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=100.00 E-value=7.4e-39 Score=360.98 Aligned_cols=259 Identities=22% Similarity=0.360 Sum_probs=207.0
Q ss_pred HhCCCCccccccccCceEEEEEEECC----CCEEEEEEeeccc-hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEE
Q 005278 413 ATNGFNECNLLGTGSFGSVYKGTLFD----GTNVAIKVFNLQL-ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKA 487 (704)
Q Consensus 413 ~~~~~~~~~~ig~G~~g~V~~~~~~~----~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~ 487 (704)
..++|+..+.||+|+||.||+|.... +..||+|++.... ....+.+.+|+.++++++||||+++++++.+ +..+
T Consensus 388 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~-~~~~ 466 (656)
T 2j0j_A 388 QRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITE-NPVW 466 (656)
T ss_dssp CGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCE
T ss_pred ccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEec-CceE
Confidence 34678888999999999999998642 4579999986543 3344679999999999999999999999854 5679
Q ss_pred EEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCC
Q 005278 488 LVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGE 567 (704)
Q Consensus 488 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~ 567 (704)
+||||+++|+|.+++......+++..++.++.|++.||+|||. .+|+||||||+||+++.++.+||+|||+++....
T Consensus 467 lv~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~givHrDikp~NILl~~~~~vkL~DFG~a~~~~~ 543 (656)
T 2j0j_A 467 IIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLES---KRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMED 543 (656)
T ss_dssp EEEECCTTCBHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEECCCCCCCSCCC
T ss_pred EEEEcCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHh---CCccccccchHhEEEeCCCCEEEEecCCCeecCC
Confidence 9999999999999998777679999999999999999999964 6899999999999999999999999999987644
Q ss_pred CCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhh-CCCCCCccccccccHHHHHHhhcCCCcchhcccc
Q 005278 568 GDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFT-RKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDAN 646 (704)
Q Consensus 568 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (704)
... .......+|+.|+|||++.+..++.++|||||||++|||++ |..||.+.... .....+....
T Consensus 544 ~~~-~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~--~~~~~i~~~~----------- 609 (656)
T 2j0j_A 544 STY-YKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNN--DVIGRIENGE----------- 609 (656)
T ss_dssp -----------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH--HHHHHHHHTC-----------
T ss_pred Ccc-eeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCHH--HHHHHHHcCC-----------
Confidence 322 22233457889999999988899999999999999999997 99999764221 1111111110
Q ss_pred chhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHH
Q 005278 647 LVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEK 695 (704)
Q Consensus 647 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~ 695 (704)
....+..++..+.+++.+||+.||++||++.|+++.|+++.+.
T Consensus 610 ------~~~~~~~~~~~l~~li~~~l~~dP~~RPs~~el~~~L~~il~~ 652 (656)
T 2j0j_A 610 ------RLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEE 652 (656)
T ss_dssp ------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred ------CCCCCccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHH
Confidence 0111224566788999999999999999999999999998654
No 209
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8.9e-37 Score=345.07 Aligned_cols=325 Identities=21% Similarity=0.256 Sum_probs=212.6
Q ss_pred CCCCCCCEEecCCCcCcccCCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccCC
Q 005278 3 YMLPNLKYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLT 82 (704)
Q Consensus 3 ~~l~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~ 82 (704)
..+++|++|+|++|.++++.|..|.++++|++|+|++|.++++.|..|.++++|++|++++|.++.+.... +.
T Consensus 54 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~-------~~ 126 (606)
T 3t6q_A 54 SRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIP-------LH 126 (606)
T ss_dssp TTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSC-------CT
T ss_pred ccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcch-------hc
Confidence 45677777777777777666777777777777777777777777777777777777777777777654333 77
Q ss_pred CCCCCcEEEccCCCCcccCChhhhhcccccceEEecCCcccccCChhhhcCCCCC--EEEccCCcCccccChhhcCC---
Q 005278 83 NCRNLTVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGMI--VFDLNGCDLNGTIPTAVGRL--- 157 (704)
Q Consensus 83 ~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~--~L~L~~n~l~~~~~~~~~~l--- 157 (704)
++++|++|+|++|++.+..++.+.. .++|++|++++|.+++..+..++.+++|+ +|++++|.+.+..|..|...
T Consensus 127 ~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~ 205 (606)
T 3t6q_A 127 NQKTLESLYLGSNHISSIKLPKGFP-TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQ 205 (606)
T ss_dssp TCTTCCEEECCSSCCCCCCCCTTCC-CTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEE
T ss_pred cCCcccEEECCCCcccccCcccccC-CcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhcccc
Confidence 7777888888888777654444444 34688888888888777777777777777 77777777765555443221
Q ss_pred ------------------------------------------------CCcCeeeccCcccCCCCCccccCCCCCCEEEc
Q 005278 158 ------------------------------------------------RRLQGLYLHGNKLQGSIPYDLCHLEGLSELNL 189 (704)
Q Consensus 158 ------------------------------------------------~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 189 (704)
.+|+.|++++|.+++..+..|..+++|++|++
T Consensus 206 ~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 285 (606)
T 3t6q_A 206 SLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDL 285 (606)
T ss_dssp EEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEEC
T ss_pred ccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEec
Confidence 04555555556665555555666667777777
Q ss_pred CCCcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCcccCCCCCc-ccccCcCCcEEEeecCccCC
Q 005278 190 NGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLNGSLPS-NIQNLKVLTNLDLSRNQLSG 268 (704)
Q Consensus 190 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~l~~n~l~~ 268 (704)
++|+++ .+|..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+.++. .+..+++|+.|++++|++++
T Consensus 286 ~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 364 (606)
T 3t6q_A 286 TATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET 364 (606)
T ss_dssp TTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCE
T ss_pred cCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccc
Confidence 777766 5566666667777777777776665566666666666666666666544433 36666666666666666664
Q ss_pred CC--CCCcCCCCCcceeeccCceeeccCCcccccccccceEEecccCCCCCCCCC-cccccccCcccccCC
Q 005278 269 DI--PTTIGGLENLETLSLADNQFQGPVPKSFGSLISLESLDLSRNNLSGEIPKN-FSAQSFLSNYALCGP 336 (704)
Q Consensus 269 ~~--~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~l~~~~l~g~ 336 (704)
.. +..+..+++|+.|++++|++++..|..+..+++|+.|++++|++.+..|.. +...+.+....+.++
T Consensus 365 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 435 (606)
T 3t6q_A 365 SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435 (606)
T ss_dssp EEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC
T ss_pred ccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCC
Confidence 43 555666666666666666666666666666666666666666666554432 444554544444444
No 210
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=1.8e-38 Score=337.07 Aligned_cols=272 Identities=22% Similarity=0.250 Sum_probs=199.4
Q ss_pred HHHhCCCCccccccccCceEEEEEEE-CCCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCCCceEEeeeeeC------
Q 005278 411 QRATNGFNECNLLGTGSFGSVYKGTL-FDGTNVAIKVFNLQLERASRSFDSECEILRSIRHRNLIKIISNCCNI------ 483 (704)
Q Consensus 411 ~~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~------ 483 (704)
....++|...+.||+|+||+||+|+. .+|+.||||++.... ....+|+++++.++||||+++++++...
T Consensus 3 ~~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~----~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~ 78 (383)
T 3eb0_A 3 ETSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDP----RYKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPK 78 (383)
T ss_dssp ---CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCT----TSCCHHHHHHTTCCCTTBCCEEEEEEEC------
T ss_pred ccccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCc----chHHHHHHHHHHcCCCCccchhheeeecCccccc
Confidence 34567899999999999999999985 579999999986542 2234799999999999999999998443
Q ss_pred --------------------------------CeEEEEEeccCCCCHHHHHh---hCCCccCHHHHHHHHHHHHHHHHHH
Q 005278 484 --------------------------------DFKALVLEFMPNGSLEKWLY---SHNYFLGILERLNIMIDVGLALEYL 528 (704)
Q Consensus 484 --------------------------------~~~~lv~e~~~~gsL~~~l~---~~~~~~~~~~~~~i~~~i~~~l~~L 528 (704)
...++||||++ |+|.+.+. .....+++..+..++.|++.||+||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~L 157 (383)
T 3eb0_A 79 PPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFI 157 (383)
T ss_dssp -------------------------------CCEEEEEECCCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34789999998 58888776 3455689999999999999999999
Q ss_pred HhcCCCCcEecCCCCCCeeeC-CCCcEEEeeeccceecCCCCCcceeccccccccccCCcccCCC-CCCcccceeeHHHH
Q 005278 529 HHGHSTPMVHCDLKPNNILLD-ENMTAHVSDFGISKLLGEGDDSVIQTMTIATIGYMAPEYGSEG-IISPKSDVYSYGIL 606 (704)
Q Consensus 529 h~~h~~~ivH~dlk~~Nil~~-~~~~~kl~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~ 606 (704)
| +.+|+||||||+||+++ .++.+||+|||+|+....... .....||+.|+|||++.+. .++.++||||+||+
T Consensus 158 H---~~gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~i 231 (383)
T 3eb0_A 158 H---SLGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEP---SVAYICSRFYRAPELMLGATEYTPSIDLWSIGCV 231 (383)
T ss_dssp H---TTTEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTSC---CCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHHHH
T ss_pred H---HCcCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCCC---CcCcccCCCccCHHHhcCCCCCCcchhhhhHHHH
Confidence 4 67899999999999998 688999999999987644322 2344689999999988764 48999999999999
Q ss_pred HHHHhhCCCCCCccccccccHHHHHHhhcCCCc----------chhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCC
Q 005278 607 LMETFTRKKPTNEIFIGEMSLKHWVKESLPDGL----------TEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESP 676 (704)
Q Consensus 607 l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P 676 (704)
+|||++|+.||.+.... ..+...+........ ....-+...........+..++..+.+++.+||+.||
T Consensus 232 l~ell~g~~pf~~~~~~-~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP 310 (383)
T 3eb0_A 232 FGELILGKPLFSGETSI-DQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGTPSLAIDLLEQILRYEP 310 (383)
T ss_dssp HHHHHHSSCSSCCSSHH-HHHHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSG
T ss_pred HHHHHhCCCCCCCCChH-HHHHHHHHHhCCCCHHHHHHhCcccccccCCccCcccHHhhCCCCCCHHHHHHHHHHccCCh
Confidence 99999999999763221 112222211111100 0000000000001111222356678999999999999
Q ss_pred CCCCCHHHHHH--HHHHhHH
Q 005278 677 EQRVSMKDAAA--KLKKIKE 694 (704)
Q Consensus 677 ~~Rpt~~ev~~--~L~~~~~ 694 (704)
++|||+.|+++ .+++++.
T Consensus 311 ~~R~t~~e~l~hp~f~~~~~ 330 (383)
T 3eb0_A 311 DLRINPYEAMAHPFFDHLRN 330 (383)
T ss_dssp GGSCCHHHHHTSGGGHHHHH
T ss_pred hhCCCHHHHhcCHHHHHHHh
Confidence 99999999974 3444433
No 211
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=100.00 E-value=3.1e-38 Score=346.60 Aligned_cols=251 Identities=21% Similarity=0.266 Sum_probs=197.6
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccc--hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEE
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL--ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVL 490 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 490 (704)
.++|...+.||+|+||+||+|+.. ++..||+|++.... ......+.+|+.+++.++||||+++++++.+....++||
T Consensus 36 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 115 (494)
T 3lij_A 36 SEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVM 115 (494)
T ss_dssp HHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 357889999999999999999965 68999999987543 234567899999999999999999999999999999999
Q ss_pred eccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCC---CCcEEEeeeccceecCC
Q 005278 491 EFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDE---NMTAHVSDFGISKLLGE 567 (704)
Q Consensus 491 e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~---~~~~kl~Dfgla~~~~~ 567 (704)
||+++|+|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++. ++.+||+|||++.....
T Consensus 116 e~~~~g~L~~~~~~~~-~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~~ 191 (494)
T 3lij_A 116 ECYKGGELFDEIIHRM-KFNEVDAAVIIKQVLSGVTYLH---KHNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFEN 191 (494)
T ss_dssp ECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEECBT
T ss_pred ecCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCceeccCChhhEEEeCCCCCCcEEEEECCCCeECCC
Confidence 9999999999887553 3899999999999999999995 468999999999999976 45599999999987654
Q ss_pred CCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccc
Q 005278 568 GDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANL 647 (704)
Q Consensus 568 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (704)
.. ......||+.|+|||++. +.++.++||||+||++|+|++|..||.+.... .....+...... .
T Consensus 192 ~~---~~~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~--~~~~~i~~~~~~-~-------- 256 (494)
T 3lij_A 192 QK---KMKERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYPPFGGQTDQ--EILRKVEKGKYT-F-------- 256 (494)
T ss_dssp TB---CBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHTCCC-C--------
T ss_pred Cc---cccccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHHhCCCC-C--------
Confidence 32 233457999999999876 46899999999999999999999999763221 111111110000 0
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 005278 648 VREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAK 688 (704)
Q Consensus 648 ~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~ 688 (704)
..+....++..+.+++.+||+.||++|||+.|+++.
T Consensus 257 -----~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~h 292 (494)
T 3lij_A 257 -----DSPEWKNVSEGAKDLIKQMLQFDSQRRISAQQALEH 292 (494)
T ss_dssp -----CSGGGTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTC
T ss_pred -----CchhcccCCHHHHHHHHHHCCCChhhCccHHHHhcC
Confidence 001112345678899999999999999999999753
No 212
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.3e-38 Score=333.60 Aligned_cols=262 Identities=23% Similarity=0.289 Sum_probs=193.9
Q ss_pred hCCCCccccccccCceEEEEEEE-CCCCEEEEEEeeccc--hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCC------
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTL-FDGTNVAIKVFNLQL--ERASRSFDSECEILRSIRHRNLIKIISNCCNID------ 484 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~------ 484 (704)
.++|...+.||+|+||.||+|.. .+|+.||||++.... ....+.+.+|+++++.++||||+++++++....
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 103 (367)
T 1cm8_A 24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT 103 (367)
T ss_dssp BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCc
Confidence 46899999999999999999986 479999999986432 234567889999999999999999999997653
Q ss_pred eEEEEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeecccee
Q 005278 485 FKALVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKL 564 (704)
Q Consensus 485 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~ 564 (704)
..++||||+ +++|.+++... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.
T Consensus 104 ~~~lv~e~~-~~~L~~~~~~~--~l~~~~~~~~~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~ 177 (367)
T 1cm8_A 104 DFYLVMPFM-GTDLGKLMKHE--KLGEDRIQFLVYQMLKGLRYIH---AAGIIHRDLKPGNLAVNEDCELKILDFGLARQ 177 (367)
T ss_dssp CCEEEEECC-SEEHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred eEEEEEecC-CCCHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHH---HCCccccCcCHHHEEEcCCCCEEEEeeecccc
Confidence 459999999 78999999864 4889999999999999999995 46899999999999999999999999999987
Q ss_pred cCCCCCcceeccccccccccCCcccCC-CCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCC--cch
Q 005278 565 LGEGDDSVIQTMTIATIGYMAPEYGSE-GIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDG--LTE 641 (704)
Q Consensus 565 ~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~--~~~ 641 (704)
.... .....+|+.|+|||++.+ ..++.++||||+||++|||++|+.||.+....+ .+........... ...
T Consensus 178 ~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-~l~~i~~~~g~~~~~~~~ 251 (367)
T 1cm8_A 178 ADSE-----MTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLD-QLKEIMKVTGTPPAEFVQ 251 (367)
T ss_dssp CCSS-----CCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHHHCCCCHHHHH
T ss_pred cccc-----cCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHhcCCCCHHHHH
Confidence 6432 234568999999998876 679999999999999999999999997632111 1111111100000 000
Q ss_pred hccccchh----------hhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 642 VVDANLVR----------EEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 642 ~~~~~~~~----------~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
.+...... ...........+..+.+++.+|++.||++|||+.|+++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~ 307 (367)
T 1cm8_A 252 RLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALA 307 (367)
T ss_dssp TCSCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred HhhhHHHHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHccCChhHCCCHHHHhc
Confidence 00000000 00000111234567889999999999999999999976
No 213
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=100.00 E-value=4.6e-38 Score=346.11 Aligned_cols=251 Identities=23% Similarity=0.287 Sum_probs=199.9
Q ss_pred HhCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccch-------------hhhHHHHHHHHHHHhcCCCCCceEEe
Q 005278 413 ATNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQLE-------------RASRSFDSECEILRSIRHRNLIKIIS 478 (704)
Q Consensus 413 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~-------------~~~~~~~~e~~~l~~l~h~niv~l~~ 478 (704)
..++|.+.+.||+|+||+||+|+.. +++.||||++..... ...+.+.+|+.++++++||||+++++
T Consensus 34 i~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~ 113 (504)
T 3q5i_A 34 IGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFD 113 (504)
T ss_dssp GGGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEE
T ss_pred cccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence 4578999999999999999999965 688999999875421 23467899999999999999999999
Q ss_pred eeeeCCeEEEEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCC---cEE
Q 005278 479 NCCNIDFKALVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENM---TAH 555 (704)
Q Consensus 479 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~---~~k 555 (704)
++.+....++||||+++|+|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++ .+|
T Consensus 114 ~~~~~~~~~lv~e~~~gg~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~k 189 (504)
T 3q5i_A 114 VFEDKKYFYLVTEFYEGGELFEQIINRH-KFDECDAANIMKQILSGICYLH---KHNIVHRDIKPENILLENKNSLLNIK 189 (504)
T ss_dssp EEECSSEEEEEEECCTTCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESSTTCCSSEE
T ss_pred EEEcCCEEEEEEecCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCcHHHEEEecCCCCccEE
Confidence 9999999999999999999999997653 4899999999999999999995 46899999999999998775 699
Q ss_pred EeeeccceecCCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhc
Q 005278 556 VSDFGISKLLGEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESL 635 (704)
Q Consensus 556 l~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~ 635 (704)
|+|||++....... ......||+.|+|||++. +.++.++||||+||++|+|++|..||.+.... .....+...
T Consensus 190 l~Dfg~a~~~~~~~---~~~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~--~~~~~i~~~- 262 (504)
T 3q5i_A 190 IVDFGLSSFFSKDY---KLRDRLGTAYYIAPEVLK-KKYNEKCDVWSCGVIMYILLCGYPPFGGQNDQ--DIIKKVEKG- 262 (504)
T ss_dssp ECCCTTCEECCTTS---CBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHC-
T ss_pred EEECCCCEEcCCCC---ccccccCCcCCCCHHHhc-cCCCchHHHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHHcC-
Confidence 99999998775432 233457999999999877 46899999999999999999999999763221 111111100
Q ss_pred CCCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 636 PDGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
... ........++..+.+++..|++.||++|||+.|+++
T Consensus 263 ----------~~~---~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~ 301 (504)
T 3q5i_A 263 ----------KYY---FDFNDWKNISDEAKELIKLMLTYDYNKRCTAEEALN 301 (504)
T ss_dssp ----------CCC---CCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred ----------CCC---CCccccCCCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 000 001112234567889999999999999999999975
No 214
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=100.00 E-value=2.2e-38 Score=325.01 Aligned_cols=266 Identities=24% Similarity=0.311 Sum_probs=200.4
Q ss_pred CCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccch--hhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEEe
Q 005278 415 NGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQLE--RASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVLE 491 (704)
Q Consensus 415 ~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 491 (704)
++|+..+.||+|+||.||+|+.. +|+.||||++..... ...+.+.+|++++++++||||+++++++...+..++|||
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 82 (299)
T 2r3i_A 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE 82 (299)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred chhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEecCCceEEEEE
Confidence 57889999999999999999965 689999999865432 234678899999999999999999999999999999999
Q ss_pred ccCCCCHHHHHhhCC-CccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCCC
Q 005278 492 FMPNGSLEKWLYSHN-YFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGDD 570 (704)
Q Consensus 492 ~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~~ 570 (704)
|++ |+|.+++.... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++........
T Consensus 83 ~~~-~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~ 158 (299)
T 2r3i_A 83 FLH-QDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH---SHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVR 158 (299)
T ss_dssp CCS-EEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECSTTHHHHHCCCSB
T ss_pred ccc-CCHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCCHHHeEEcCCCCEEECcchhhhhccCCcc
Confidence 997 69999998553 45889999999999999999995 46899999999999999999999999999987643221
Q ss_pred cceeccccccccccCCcccCCCC-CCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhc-CCC--cchhc---
Q 005278 571 SVIQTMTIATIGYMAPEYGSEGI-ISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESL-PDG--LTEVV--- 643 (704)
Q Consensus 571 ~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~-~~~--~~~~~--- 643 (704)
......+|+.|+|||.+.+.. ++.++||||||+++|||+||+.||.+....+ .+........ +.. +....
T Consensus 159 --~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 235 (299)
T 2r3i_A 159 --TYTHEVVTLWYRAPEILLGAKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEID-QLFRIFRTLGTPDEVVWPGVTSMP 235 (299)
T ss_dssp --CTTSCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCCCCTTTSTTGGGST
T ss_pred --ccCcccccccccCcHHhhccccCChHHHHHHHHHHHHHHHhCCCCCCCccHHH-HHHHHHHHhCCCchhhhhHhhcCc
Confidence 223346899999999987755 7899999999999999999999997632211 1111111111 100 00000
Q ss_pred --cccchh--hhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 644 --DANLVR--EEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 644 --~~~~~~--~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
.+.+.. ..........++.++.+++.+|++.||++|||+.|+++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~~l~ 283 (299)
T 2r3i_A 236 DYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALA 283 (299)
T ss_dssp TCCTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred ccchhhhcccchhhHhhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence 000000 00000011234567889999999999999999999964
No 215
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=100.00 E-value=1.4e-38 Score=349.07 Aligned_cols=250 Identities=25% Similarity=0.319 Sum_probs=203.3
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccc---hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEE
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL---ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALV 489 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 489 (704)
.++|...+.||+|+||.||+|+.. +|+.||||++.... ....+.+.+|++++++++||||+++++++.+....++|
T Consensus 25 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 104 (484)
T 3nyv_A 25 SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLV 104 (484)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence 357888999999999999999965 79999999986543 23456799999999999999999999999999999999
Q ss_pred EeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeee---CCCCcEEEeeeccceecC
Q 005278 490 LEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILL---DENMTAHVSDFGISKLLG 566 (704)
Q Consensus 490 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~---~~~~~~kl~Dfgla~~~~ 566 (704)
|||+.+|+|.+++.... .+++..+..++.|++.||+|||. .+|+||||||+||++ +.++.+||+|||+++...
T Consensus 105 ~e~~~~~~L~~~~~~~~-~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~ 180 (484)
T 3nyv_A 105 GEVYTGGELFDEIISRK-RFSEVDAARIIRQVLSGITYMHK---NKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFE 180 (484)
T ss_dssp ECCCCSCBHHHHHHTCS-CCBHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESSSSTTCCEEECCTTHHHHBC
T ss_pred EecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEcc
Confidence 99999999999997654 48999999999999999999954 689999999999999 567899999999998765
Q ss_pred CCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhcccc
Q 005278 567 EGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDAN 646 (704)
Q Consensus 567 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (704)
... ......||+.|+|||++.+ .++.++||||+||++|+|++|..||.+.... .....+......
T Consensus 181 ~~~---~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~--~~~~~i~~~~~~--------- 245 (484)
T 3nyv_A 181 ASK---KMKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGANEY--DILKKVEKGKYT--------- 245 (484)
T ss_dssp CCC---SHHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHCCCC---------
T ss_pred ccc---ccccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCCCCHH--HHHHHHHcCCCC---------
Confidence 432 2334579999999998866 6899999999999999999999999763211 111111110000
Q ss_pred chhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 647 LVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 647 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
...+....++..+.+++.+||+.||++|||+.|+++
T Consensus 246 -----~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~ 281 (484)
T 3nyv_A 246 -----FELPQWKKVSESAKDLIRKMLTYVPSMRISARDALD 281 (484)
T ss_dssp -----CCSGGGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred -----CCCcccccCCHHHHHHHHHHCCCChhHCcCHHHHhh
Confidence 001112234567889999999999999999999975
No 216
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=100.00 E-value=9.6e-39 Score=333.98 Aligned_cols=252 Identities=23% Similarity=0.287 Sum_probs=198.0
Q ss_pred HhCCCCccccccccCceEEEEEEE-CCCCEEEEEEeeccc-hhhhHHHHHHHHH-HHhcCCCCCceEEeeeeeCCeEEEE
Q 005278 413 ATNGFNECNLLGTGSFGSVYKGTL-FDGTNVAIKVFNLQL-ERASRSFDSECEI-LRSIRHRNLIKIISNCCNIDFKALV 489 (704)
Q Consensus 413 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~e~~~-l~~l~h~niv~l~~~~~~~~~~~lv 489 (704)
..++|+..+.||+|+||.||+|+. .+|+.||||++.... ......+..|... ++.++||||+++++++...+..++|
T Consensus 49 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~~~~~~~~~~~~~lv 128 (340)
T 3an0_A 49 KADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWIC 128 (340)
T ss_dssp CSSCEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCCCCHHHHHHHHHHHHHHTTCCCTTTCCEEEEEECSSCEEEE
T ss_pred ehhheeEeeEecccCCEEEEEEEEcCCCCEEEEEEeccccCcHHHHHHHHHHHHHHhhcCCCcEEEEeeEEEeCCcEEEE
Confidence 456888999999999999999996 479999999987543 2233445555555 7778999999999999999999999
Q ss_pred EeccCCCCHHHHHhh---CCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecC
Q 005278 490 LEFMPNGSLEKWLYS---HNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLG 566 (704)
Q Consensus 490 ~e~~~~gsL~~~l~~---~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~ 566 (704)
|||+++ +|.+++.. ....+++..+..++.|++.||+|||.. .+|+||||||+||+++.++.+||+|||+++...
T Consensus 129 ~e~~~~-~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~--~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~ 205 (340)
T 3an0_A 129 MELMDT-SLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSK--LSVIHRDVKPSNVLINALGQVKMCDFGISGYLV 205 (340)
T ss_dssp ECCCSE-EHHHHHHHHHHTSCCCCHHHHHHHHHHHHHHHHHHHHH--TCCCCCSCCSTTEEECSTTCEEECCCSHHHHHS
T ss_pred HHHhhC-cHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhc--CCeecCCCCHHHEEECCCCCEEEeeCCCceecc
Confidence 999975 99998874 456799999999999999999999641 389999999999999999999999999998764
Q ss_pred CCCCcceeccccccccccCCcccC----CCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchh
Q 005278 567 EGDDSVIQTMTIATIGYMAPEYGS----EGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEV 642 (704)
Q Consensus 567 ~~~~~~~~~~~~gt~~y~aPE~~~----~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (704)
.. .......||+.|+|||++. ...++.++|||||||++|||+||+.||.........+........+.
T Consensus 206 ~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~----- 277 (340)
T 3an0_A 206 DS---VAKTIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVVEEPSPQ----- 277 (340)
T ss_dssp CH---HHHHHSSCCCCCCCHHHHSCCTTCCSCCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHHHHHHHHSCCCC-----
T ss_pred cc---cccccCCCCccccCccccccccccCCCCchhhHHHHHHHHHHHHHCCCCCccccchHHHHHHHhcCCCCC-----
Confidence 32 1223347999999999864 44789999999999999999999999975322111111111110000
Q ss_pred ccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 643 VDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
.....++..+.+++.+||+.||++||++.|+++
T Consensus 278 ------------~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 310 (340)
T 3an0_A 278 ------------LPADKFSAEFVDFTSQCLKKNSKERPTYPELMQ 310 (340)
T ss_dssp ------------CCGGGSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred ------------CCcccCCHHHHHHHHHHccCCcccCcCHHHHhc
Confidence 011124567889999999999999999999976
No 217
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=100.00 E-value=2.8e-38 Score=327.71 Aligned_cols=252 Identities=26% Similarity=0.320 Sum_probs=197.1
Q ss_pred HhCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccch--------hhhHHHHHHHHHHHhcCCCCCceEEeeeeeC
Q 005278 413 ATNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQLE--------RASRSFDSECEILRSIRHRNLIKIISNCCNI 483 (704)
Q Consensus 413 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~--------~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~ 483 (704)
..++|.+.+.||+|+||.||+|+.. +++.||||++..... .....+.+|++++++++||||+++++++...
T Consensus 8 l~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~ 87 (322)
T 2ycf_A 8 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAE 87 (322)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESS
T ss_pred hhhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCC
Confidence 3467999999999999999999865 689999999864321 1223588999999999999999999998766
Q ss_pred CeEEEEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCc---EEEeeec
Q 005278 484 DFKALVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMT---AHVSDFG 560 (704)
Q Consensus 484 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~---~kl~Dfg 560 (704)
. .++||||+++|+|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++. +||+|||
T Consensus 88 ~-~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg 162 (322)
T 2ycf_A 88 D-YYIVLELMEGGELFDKVVGNK-RLKEATCKLYFYQMLLAVQYLH---ENGIIHRDLKPENVLLSSQEEDCLIKITDFG 162 (322)
T ss_dssp S-EEEEEECCTTEETHHHHSTTC-CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESSSSSSCCEEECCCT
T ss_pred c-eEEEEecCCCCcHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHEEEecCCCCCeEEEccCc
Confidence 5 799999999999999987543 4899999999999999999995 468999999999999987664 9999999
Q ss_pred cceecCCCCCcceeccccccccccCCccc---CCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCC
Q 005278 561 ISKLLGEGDDSVIQTMTIATIGYMAPEYG---SEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPD 637 (704)
Q Consensus 561 la~~~~~~~~~~~~~~~~gt~~y~aPE~~---~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~ 637 (704)
+++..... .......||+.|+|||++ ....++.++|||||||++|||++|..||....... .+...+......
T Consensus 163 ~~~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-~~~~~~~~~~~~ 238 (322)
T 2ycf_A 163 HSKILGET---SLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQV-SLKDQITSGKYN 238 (322)
T ss_dssp TCEECCCC---HHHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCSS-CHHHHHHHTCCC
T ss_pred cceecccc---cccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchHH-HHHHHHHhCccc
Confidence 99876432 122345689999999986 35678899999999999999999999997643222 222222211100
Q ss_pred CcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 638 GLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
.. ......++..+.+++.+||+.||++||++.|+++
T Consensus 239 ~~--------------~~~~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~ 274 (322)
T 2ycf_A 239 FI--------------PEVWAEVSEKALDLVKKLLVVDPKARFTTEEALR 274 (322)
T ss_dssp CC--------------HHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred cC--------------chhhhhcCHHHHHHHHHHcccCHhhCCCHHHHhh
Confidence 00 0111234567889999999999999999999975
No 218
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=100.00 E-value=9.6e-39 Score=329.87 Aligned_cols=256 Identities=24% Similarity=0.328 Sum_probs=196.6
Q ss_pred HHHHHhCCCCccccccccCceEEEEEEECCCCEEEEEEeeccc--hhhhHHHHHHHHHHHhcC--CCCCceEEeeeeeCC
Q 005278 409 DIQRATNGFNECNLLGTGSFGSVYKGTLFDGTNVAIKVFNLQL--ERASRSFDSECEILRSIR--HRNLIKIISNCCNID 484 (704)
Q Consensus 409 ~~~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~--h~niv~l~~~~~~~~ 484 (704)
.+....++|+..+.||+|+||.||+|+..+++.||||++.... ....+.+.+|++++++++ ||||+++++++...+
T Consensus 22 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~ 101 (313)
T 3cek_A 22 SMSVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQ 101 (313)
T ss_dssp EEEETTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSS
T ss_pred eeeeccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeecCC
Confidence 3344567899999999999999999998889999999986543 334567899999999997 599999999999999
Q ss_pred eEEEEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeecccee
Q 005278 485 FKALVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKL 564 (704)
Q Consensus 485 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~ 564 (704)
..++||| +.+++|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||++++ +.+||+|||++..
T Consensus 102 ~~~lv~e-~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIl~~~-~~~kL~Dfg~~~~ 175 (313)
T 3cek_A 102 YIYMVME-CGNIDLNSWLKKKK-SIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPANFLIVD-GMLKLIDFGIANQ 175 (313)
T ss_dssp EEEEEEC-CCSEEHHHHHHHCS-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEET-TEEEECCCSSSCC
T ss_pred EEEEEEe-cCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCcccEEEEC-CeEEEeecccccc
Confidence 9999999 56889999998654 4889999999999999999995 468999999999999964 8999999999987
Q ss_pred cCCCCCcceeccccccccccCCcccCC-----------CCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHh
Q 005278 565 LGEGDDSVIQTMTIATIGYMAPEYGSE-----------GIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKE 633 (704)
Q Consensus 565 ~~~~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~ 633 (704)
..............||+.|+|||++.+ ..++.++||||||+++|||++|+.||................
T Consensus 176 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~ 255 (313)
T 3cek_A 176 MQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDP 255 (313)
T ss_dssp --------------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHCT
T ss_pred ccCccccccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHhc
Confidence 754433333344579999999998765 468889999999999999999999997643221111111110
Q ss_pred hcCCCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 634 SLPDGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
... ...+..++..+.+++.+||+.||++||++.|+++
T Consensus 256 ~~~-----------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 292 (313)
T 3cek_A 256 NHE-----------------IEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLA 292 (313)
T ss_dssp TSC-----------------CCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred ccc-----------------cCCcccchHHHHHHHHHHccCCcccCcCHHHHhc
Confidence 000 0001122456788999999999999999999975
No 219
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=100.00 E-value=7.6e-38 Score=330.01 Aligned_cols=273 Identities=19% Similarity=0.213 Sum_probs=192.3
Q ss_pred HHHHHHhCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCe-
Q 005278 408 LDIQRATNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQLERASRSFDSECEILRSIRHRNLIKIISNCCNIDF- 485 (704)
Q Consensus 408 ~~~~~~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~- 485 (704)
.+.....++|.+.+.||+|+||.||+|+.. +|+.||||++... ........++++.++.++||||+++++++.....
T Consensus 16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~ 94 (360)
T 3e3p_A 16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQD-PRFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGER 94 (360)
T ss_dssp HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECC-TTCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSS
T ss_pred hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecC-ccccHHHHHHHHHHHhcCCCCcccHHHhhhccccc
Confidence 345667789999999999999999999964 6899999998654 2334456778888999999999999999966433
Q ss_pred ------EEEEEeccCCCCHHHHHh---hCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCC-CCcEE
Q 005278 486 ------KALVLEFMPNGSLEKWLY---SHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDE-NMTAH 555 (704)
Q Consensus 486 ------~~lv~e~~~~gsL~~~l~---~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~-~~~~k 555 (704)
.++||||+++ ++.+.+. .....+++..+..++.|++.|+.|||. |+.+|+||||||+||+++. ++.+|
T Consensus 95 ~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~-~~~~ivH~Dlkp~NIll~~~~~~~k 172 (360)
T 3e3p_A 95 DRRDIYLNVVMEYVPD-TLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHL-PSVNVCHRDIKPHNVLVNEADGTLK 172 (360)
T ss_dssp CTTCEEEEEEEECCSC-BHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTS-TTTCCBCSCCCGGGEEEETTTTEEE
T ss_pred cccceeEEEEeecccc-cHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhC-CCCCeecCcCCHHHEEEeCCCCcEE
Confidence 7899999986 5555444 245568899999999999999999964 5899999999999999996 89999
Q ss_pred EeeeccceecCCCCCcceeccccccccccCCcccCCC-CCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhh
Q 005278 556 VSDFGISKLLGEGDDSVIQTMTIATIGYMAPEYGSEG-IISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKES 634 (704)
Q Consensus 556 l~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~ 634 (704)
|+|||+++....... .....||+.|+|||++.+. .++.++|||||||++|||++|+.||.+.... ..+....+..
T Consensus 173 l~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~-~~~~~~~~~~ 248 (360)
T 3e3p_A 173 LCDFGSAKKLSPSEP---NVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSA-GQLHEIVRVL 248 (360)
T ss_dssp ECCCTTCBCCCTTSC---CCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHHH
T ss_pred EeeCCCceecCCCCC---cccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCChH-HHHHHHHHHc
Confidence 999999987654322 2345689999999988654 4899999999999999999999999763221 1122222111
Q ss_pred cCCC--cchhcc-----------ccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 635 LPDG--LTEVVD-----------ANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 635 ~~~~--~~~~~~-----------~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
.... .....+ ...............++..+.+++.+||+.||++|||+.|+++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 314 (360)
T 3e3p_A 249 GCPSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALC 314 (360)
T ss_dssp CCCCHHHHHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred CCCCHHHHHhcccchhhccccccccCCcccccchhhccccHHHHHHHHHHhccCccccCCHHHHhc
Confidence 1100 000000 0000000011111224678999999999999999999999953
No 220
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=100.00 E-value=3e-38 Score=339.58 Aligned_cols=198 Identities=25% Similarity=0.305 Sum_probs=172.0
Q ss_pred HhCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccchhhhHHHHHHHHHHHhc------CCCCCceEEeeeeeCCe
Q 005278 413 ATNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQLERASRSFDSECEILRSI------RHRNLIKIISNCCNIDF 485 (704)
Q Consensus 413 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l------~h~niv~l~~~~~~~~~ 485 (704)
...+|++.+.||+|+||+||+|... +++.||||++... ....+.+.+|+++++.+ +|+||+++++++.....
T Consensus 95 ~~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~ 173 (429)
T 3kvw_A 95 VAYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNE-KRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNH 173 (429)
T ss_dssp ETTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTE
T ss_pred ccCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCc-cchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCe
Confidence 3467999999999999999999865 5899999998754 33446678889888887 57799999999999999
Q ss_pred EEEEEeccCCCCHHHHHhhCC-CccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCc--EEEeeeccc
Q 005278 486 KALVLEFMPNGSLEKWLYSHN-YFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMT--AHVSDFGIS 562 (704)
Q Consensus 486 ~~lv~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~--~kl~Dfgla 562 (704)
.++||||+. ++|.+++.... ..+++..+..++.|++.||+|||. .+|+||||||+||+++.++. +||+|||++
T Consensus 174 ~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlKp~NILl~~~~~~~vkL~DFG~a 249 (429)
T 3kvw_A 174 ICMTFELLS-MNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALHK---NRIIHCDLKPENILLKQQGRSGIKVIDFGSS 249 (429)
T ss_dssp EEEEECCCC-CBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHH---HTEECSCCSGGGEEESSTTSCCEEECCCTTC
T ss_pred EEEEEeccC-CCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEEccCCCcceEEeecccc
Confidence 999999996 69999998654 458999999999999999999964 68999999999999999887 999999999
Q ss_pred eecCCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCcc
Q 005278 563 KLLGEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEI 620 (704)
Q Consensus 563 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~ 620 (704)
...... .....||+.|+|||++.+..++.++|||||||++|||+||+.||.+.
T Consensus 250 ~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~ 302 (429)
T 3kvw_A 250 CYEHQR-----VYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGE 302 (429)
T ss_dssp EETTCC-----CCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred eecCCc-----ccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCC
Confidence 865432 22346899999999999999999999999999999999999999764
No 221
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=100.00 E-value=8.8e-38 Score=331.71 Aligned_cols=201 Identities=25% Similarity=0.301 Sum_probs=173.5
Q ss_pred HHhCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccchhhhHHHHHHHHHHHhcC-CC-----CCceEEeeeeeCC
Q 005278 412 RATNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQLERASRSFDSECEILRSIR-HR-----NLIKIISNCCNID 484 (704)
Q Consensus 412 ~~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~-----niv~l~~~~~~~~ 484 (704)
...++|++.+.||+|+||+||+|+.. +++.||||++... ......+..|+++++.++ |+ +|+++++++...+
T Consensus 51 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~ 129 (382)
T 2vx3_A 51 KWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNK-KAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRN 129 (382)
T ss_dssp EETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETT
T ss_pred EeeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEecc-HHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCC
Confidence 34678999999999999999999865 6889999998743 233566788999998885 55 4999999999999
Q ss_pred eEEEEEeccCCCCHHHHHhhCC-CccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeC--CCCcEEEeeecc
Q 005278 485 FKALVLEFMPNGSLEKWLYSHN-YFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLD--ENMTAHVSDFGI 561 (704)
Q Consensus 485 ~~~lv~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~--~~~~~kl~Dfgl 561 (704)
..++||||++ |+|.+++.... ..+++..+..++.|++.||+|||. |+.+|+||||||+||+++ .++.+||+|||+
T Consensus 130 ~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~-~~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~ 207 (382)
T 2vx3_A 130 HLCLVFEMLS-YNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLAT-PELSIIHCDLKPENILLCNPKRSAIKIVDFGS 207 (382)
T ss_dssp EEEEEEECCC-CBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTS-TTTCEECCCCSGGGEEESSTTSCCEEECCCTT
T ss_pred ceEEEEecCC-CCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhcc-CCCCEEcCCCCcccEEEecCCCCcEEEEeccC
Confidence 9999999996 59999998653 458999999999999999999975 578999999999999995 578899999999
Q ss_pred ceecCCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCcc
Q 005278 562 SKLLGEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEI 620 (704)
Q Consensus 562 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~ 620 (704)
++..... .....||+.|+|||++.+..++.++|||||||++|||+||+.||.+.
T Consensus 208 a~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~ 261 (382)
T 2vx3_A 208 SCQLGQR-----IYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGA 261 (382)
T ss_dssp CEETTCC-----CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred ceecccc-----cccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 9876432 22356899999999999999999999999999999999999999763
No 222
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=100.00 E-value=6.6e-39 Score=333.22 Aligned_cols=259 Identities=24% Similarity=0.308 Sum_probs=198.4
Q ss_pred cchHHHHHHhCCCCccccccccCceEEEEEEE-CCCCEEEEEEeeccchhhhHHHHHHHHHHHhc-CCCCCceEEeeeee
Q 005278 405 TSYLDIQRATNGFNECNLLGTGSFGSVYKGTL-FDGTNVAIKVFNLQLERASRSFDSECEILRSI-RHRNLIKIISNCCN 482 (704)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~ 482 (704)
+.+.++....++|+..+.||+|+||.||+|+. .+++.||||++.... ...+.+.+|+.+++++ +||||+++++++..
T Consensus 14 ~~~~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~ 92 (326)
T 2x7f_A 14 IDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG-DEEEEIKQEINMLKKYSHHRNIATYYGAFIK 92 (326)
T ss_dssp --CCCCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS-STTHHHHHHHHHHHHHCCSTTBCCEEEEEEE
T ss_pred ccchhccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCc-ccHHHHHHHHHHHHhccCCCCeeeeeeEEee
Confidence 33444555678999999999999999999996 478999999986542 3456789999999999 89999999999977
Q ss_pred ------CCeEEEEEeccCCCCHHHHHhhC-CCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEE
Q 005278 483 ------IDFKALVLEFMPNGSLEKWLYSH-NYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAH 555 (704)
Q Consensus 483 ------~~~~~lv~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~k 555 (704)
.+..++||||+++|+|.+++... ...+++..+..++.|++.||+|||. .+|+||||||+||+++.++.+|
T Consensus 93 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~dlkp~NIl~~~~~~~k 169 (326)
T 2x7f_A 93 KNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQ---HKVIHRDIKGQNVLLTENAEVK 169 (326)
T ss_dssp CC--CCCCEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEECTTCCEE
T ss_pred ccCccccceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCcHHHEEEcCCCCEE
Confidence 46789999999999999999864 3468999999999999999999954 6899999999999999999999
Q ss_pred EeeeccceecCCCCCcceeccccccccccCCcccC-----CCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHH
Q 005278 556 VSDFGISKLLGEGDDSVIQTMTIATIGYMAPEYGS-----EGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHW 630 (704)
Q Consensus 556 l~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~ 630 (704)
|+|||++........ ......||+.|+|||++. +..++.++|||||||++|||++|+.||....... ....
T Consensus 170 l~Dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~--~~~~ 245 (326)
T 2x7f_A 170 LVDFGVSAQLDRTVG--RRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMR--ALFL 245 (326)
T ss_dssp ECCCTTTC---------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSCHHH--HHHH
T ss_pred EeeCcCceecCcCcc--ccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCcHHH--HHHH
Confidence 999999987643211 123346899999999886 5678999999999999999999999996532211 0011
Q ss_pred HHhhcCCCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 631 VKESLPDGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
....... .. ....++..+.+++.+||+.||++||++.|+++
T Consensus 246 ~~~~~~~--------~~--------~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 286 (326)
T 2x7f_A 246 IPRNPAP--------RL--------KSKKWSKKFQSFIESCLVKNHSQRPATEQLMK 286 (326)
T ss_dssp HHHSCCC--------CC--------SCSCSCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred hhcCccc--------cC--------CccccCHHHHHHHHHHhccChhhCCCHHHHhh
Confidence 1100000 00 01123457889999999999999999999976
No 223
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=100.00 E-value=5.4e-38 Score=331.17 Aligned_cols=268 Identities=21% Similarity=0.242 Sum_probs=200.8
Q ss_pred HhCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccc-hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeC-----Ce
Q 005278 413 ATNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL-ERASRSFDSECEILRSIRHRNLIKIISNCCNI-----DF 485 (704)
Q Consensus 413 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~-----~~ 485 (704)
..++|+..+.||+|+||.||+|+.. +++.||||++.... ......+.+|++++++++||||+++++++... ..
T Consensus 25 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 104 (364)
T 3qyz_A 25 VGPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKD 104 (364)
T ss_dssp CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCC
T ss_pred ccccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccce
Confidence 3468999999999999999999864 68899999987433 33446788999999999999999999998665 36
Q ss_pred EEEEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceec
Q 005278 486 KALVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLL 565 (704)
Q Consensus 486 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~ 565 (704)
.++||||++ |+|.+++.... +++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++...
T Consensus 105 ~~iv~e~~~-~~L~~~l~~~~--~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~ 178 (364)
T 3qyz_A 105 VYIVQDLME-TDLYKLLKTQH--LSNDHICYFLYQILRGLKYIH---SANVLHRDLKPSNLLLNTTCDLKICDFGLARVA 178 (364)
T ss_dssp EEEEEECCS-EEHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred EEEEEcccC-cCHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHH---HCCeecCCCChHhEEECCCCCEEEEeCcceEec
Confidence 899999997 59999987643 899999999999999999995 478999999999999999999999999999876
Q ss_pred CCCCCcc-eeccccccccccCCcccC-CCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCc---c
Q 005278 566 GEGDDSV-IQTMTIATIGYMAPEYGS-EGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGL---T 640 (704)
Q Consensus 566 ~~~~~~~-~~~~~~gt~~y~aPE~~~-~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~---~ 640 (704)
....... ......||+.|+|||++. +..++.++||||+||++|||++|+.||.+....+ .+............ .
T Consensus 179 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-~~~~i~~~~~~~~~~~~~ 257 (364)
T 3qyz_A 179 DPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLD-QLNHILGILGSPSQEDLN 257 (364)
T ss_dssp CGGGCBCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGGG-HHHHHHHHHCSCCHHHHH
T ss_pred CCCCCccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChHH-HHHHHHHHhCCCCHHHHH
Confidence 5332211 123447999999999765 4558999999999999999999999997643221 11111111100000 0
Q ss_pred hhccccch---------hhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 641 EVVDANLV---------REEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 641 ~~~~~~~~---------~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
...+.... ...........++..+.+++.+||+.||++|||+.|+++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 313 (364)
T 3qyz_A 258 CIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALA 313 (364)
T ss_dssp TCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HhhhhhHHHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 00000000 000000111234567889999999999999999999964
No 224
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=100.00 E-value=8.6e-38 Score=330.27 Aligned_cols=260 Identities=19% Similarity=0.217 Sum_probs=191.3
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccc--hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCC------
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL--ERASRSFDSECEILRSIRHRNLIKIISNCCNID------ 484 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~------ 484 (704)
.++|...+.||+|+||.||+|... +++.||||++.... ....+.+.+|+.+++.++||||+++++++...+
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~ 103 (371)
T 2xrw_A 24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ 103 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCC
T ss_pred hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccccc
Confidence 368999999999999999999854 68999999987542 334567889999999999999999999997654
Q ss_pred eEEEEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeecccee
Q 005278 485 FKALVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKL 564 (704)
Q Consensus 485 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~ 564 (704)
..++||||++ |+|.+++.. .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.
T Consensus 104 ~~~lv~e~~~-~~l~~~~~~---~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~ 176 (371)
T 2xrw_A 104 DVYIVMELMD-ANLCQVIQM---ELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLART 176 (371)
T ss_dssp EEEEEEECCS-EEHHHHHHS---CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECCCCC---
T ss_pred ceEEEEEcCC-CCHHHHHhh---ccCHHHHHHHHHHHHHHHHHHH---HCCeecccCCHHHEEEcCCCCEEEEEeecccc
Confidence 7899999997 478888863 3789999999999999999995 46899999999999999999999999999986
Q ss_pred cCCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhc--CCCcchh
Q 005278 565 LGEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESL--PDGLTEV 642 (704)
Q Consensus 565 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~ 642 (704)
..... ......||+.|+|||++.+..++.++|||||||++|||++|+.||.+... ...|..... .....+.
T Consensus 177 ~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~----~~~~~~i~~~~~~~~~~~ 249 (371)
T 2xrw_A 177 AGTSF---MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDH----IDQWNKVIEQLGTPCPEF 249 (371)
T ss_dssp ----------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSH----HHHHHHHHC-CCCCCHHH
T ss_pred ccccc---ccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCH----HHHHHHHHHHhCCCCHHH
Confidence 64321 22345789999999999999999999999999999999999999976321 111111000 0000000
Q ss_pred c---c----------ccch-----h------hhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 643 V---D----------ANLV-----R------EEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 643 ~---~----------~~~~-----~------~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
. . +... . ...........+..+.+++.+||+.||++|||++|+++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~ 318 (371)
T 2xrw_A 250 MKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQ 318 (371)
T ss_dssp HTTSCHHHHHHHHSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred HHHhhhHHHHHHhhCccccccchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCCCHHHHhC
Confidence 0 0 0000 0 00001112334678899999999999999999999965
No 225
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=100.00 E-value=1.5e-39 Score=337.11 Aligned_cols=262 Identities=22% Similarity=0.317 Sum_probs=200.6
Q ss_pred HHhCCCCccccccccCceEEEEEEECCCCEEEEEEeeccc--hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEE
Q 005278 412 RATNGFNECNLLGTGSFGSVYKGTLFDGTNVAIKVFNLQL--ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALV 489 (704)
Q Consensus 412 ~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 489 (704)
...++|+..+.||+|+||.||+|+..+ .+|+|++.... ....+.+.+|+.++++++||||+++++++.+.+..++|
T Consensus 30 i~~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~iv 107 (319)
T 2y4i_B 30 IPFEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAII 107 (319)
T ss_dssp SCCSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCEEEE
T ss_pred CCHHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCceEEE
Confidence 345789999999999999999998653 59999987543 22335678899999999999999999999999999999
Q ss_pred EeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCC
Q 005278 490 LEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGD 569 (704)
Q Consensus 490 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~ 569 (704)
|||+++++|.+++...+..+++..++.++.|++.|++|||. .+|+||||||+||+++ ++.+||+|||+++......
T Consensus 108 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~---~~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~~~~~ 183 (319)
T 2y4i_B 108 TSLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYLHA---KGILHKDLKSKNVFYD-NGKVVITDFGLFSISGVLQ 183 (319)
T ss_dssp CBCCCSEEHHHHTTSSCCCCCSHHHHHHHHHHHHHHHHHHH---TTCCCCCCCSTTEEEC---CCEECCCSCCC------
T ss_pred eecccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh---CCccccCCChhhEEEe-CCCEEEeecCCcccccccc
Confidence 99999999999998777679999999999999999999964 6899999999999998 6799999999987653221
Q ss_pred ---CcceeccccccccccCCcccCC---------CCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCC
Q 005278 570 ---DSVIQTMTIATIGYMAPEYGSE---------GIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPD 637 (704)
Q Consensus 570 ---~~~~~~~~~gt~~y~aPE~~~~---------~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~ 637 (704)
.........||+.|+|||++.+ ..++.++||||||+++|||++|+.||...... .........
T Consensus 184 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~-----~~~~~~~~~ 258 (319)
T 2y4i_B 184 AGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPAE-----AIIWQMGTG 258 (319)
T ss_dssp ----CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCCHH-----HHHHHHHTT
T ss_pred ccccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH-----HHHHHhccC
Confidence 1122233468999999998764 45788999999999999999999999763221 111111000
Q ss_pred CcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHHhh
Q 005278 638 GLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEKFL 697 (704)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~ 697 (704)
. .+.. ....++..+.+++..||+.||++||++.|+++.|+++.++..
T Consensus 259 ~-----~~~~--------~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~l~~~~~ 305 (319)
T 2y4i_B 259 M-----KPNL--------SQIGMGKEISDILLFCWAFEQEERPTFTKLMDMLEKLPKRNR 305 (319)
T ss_dssp C-----CCCC--------CCSSCCTTHHHHHHHHHCSSTTTSCCHHHHHHHHTTC-----
T ss_pred C-----CCCC--------CcCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhhc
Confidence 0 0000 001233457889999999999999999999999999876643
No 226
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=100.00 E-value=2.6e-38 Score=357.66 Aligned_cols=245 Identities=20% Similarity=0.237 Sum_probs=200.9
Q ss_pred HHhCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccc---hhhhHHHHHHHHHHHhc-CCCCCceEEeeeeeCCeE
Q 005278 412 RATNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL---ERASRSFDSECEILRSI-RHRNLIKIISNCCNIDFK 486 (704)
Q Consensus 412 ~~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~ 486 (704)
...++|+..+.||+|+||.||+|+.. +++.||||+++... ....+.+..|..++..+ +||+|+++++++.+.+..
T Consensus 338 ~~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~ 417 (674)
T 3pfq_A 338 MKLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRL 417 (674)
T ss_dssp --CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEE
T ss_pred ccccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEE
Confidence 34578999999999999999999965 68899999997542 23446688899999988 799999999999999999
Q ss_pred EEEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecC
Q 005278 487 ALVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLG 566 (704)
Q Consensus 487 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~ 566 (704)
++||||+++|+|.+++...+ .+++..+..++.||+.||+||| +.+|+||||||+|||++.++++||+|||+|+...
T Consensus 418 ~lV~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~gIiHrDLKp~NILl~~~g~ikL~DFGla~~~~ 493 (674)
T 3pfq_A 418 YFVMEYVNGGDLMYHIQQVG-RFKEPHAVFYAAEIAIGLFFLQ---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENI 493 (674)
T ss_dssp EEEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTSEECCCCCSTTEEECSSSCEEECCCTTCEECC
T ss_pred EEEEeCcCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---hCCeEeccCChhhEEEcCCCcEEEeecceeeccc
Confidence 99999999999999998654 4899999999999999999995 4789999999999999999999999999998643
Q ss_pred CCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhcccc
Q 005278 567 EGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDAN 646 (704)
Q Consensus 567 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (704)
... .......||+.|+|||++.+..++.++|||||||++|||++|+.||.+... .......... .
T Consensus 494 ~~~--~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~-----~~~~~~i~~~--------~ 558 (674)
T 3pfq_A 494 WDG--VTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDE-----DELFQSIMEH--------N 558 (674)
T ss_dssp CTT--CCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHHHSS--------C
T ss_pred cCC--cccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCCH-----HHHHHHHHhC--------C
Confidence 322 223456799999999999999999999999999999999999999976321 1111111111 0
Q ss_pred chhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCH
Q 005278 647 LVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSM 682 (704)
Q Consensus 647 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~ 682 (704)
...+...+.++.+++..||+.||++||++
T Consensus 559 -------~~~p~~~s~~~~~li~~lL~~dP~~R~~~ 587 (674)
T 3pfq_A 559 -------VAYPKSMSKEAVAICKGLMTKHPGKRLGC 587 (674)
T ss_dssp -------CCCCTTSCHHHHHHHHHHSCSSSTTCTTC
T ss_pred -------CCCCccCCHHHHHHHHHHccCCHHHCCCC
Confidence 01112345678899999999999999997
No 227
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=100.00 E-value=1e-37 Score=319.89 Aligned_cols=253 Identities=23% Similarity=0.291 Sum_probs=202.5
Q ss_pred HHhCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccc---------hhhhHHHHHHHHHHHhcC-CCCCceEEeee
Q 005278 412 RATNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL---------ERASRSFDSECEILRSIR-HRNLIKIISNC 480 (704)
Q Consensus 412 ~~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~---------~~~~~~~~~e~~~l~~l~-h~niv~l~~~~ 480 (704)
...++|+..+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|+++++++. ||||+++++++
T Consensus 14 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~ 93 (298)
T 1phk_A 14 GFYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTY 93 (298)
T ss_dssp -CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEE
T ss_pred chhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeee
Confidence 34578999999999999999999965 68999999986432 123456889999999995 99999999999
Q ss_pred eeCCeEEEEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeec
Q 005278 481 CNIDFKALVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFG 560 (704)
Q Consensus 481 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfg 560 (704)
......++||||+++|+|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||
T Consensus 94 ~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg 169 (298)
T 1phk_A 94 ETNTFFFLVFDLMKKGELFDYLTEKV-TLSEKETRKIMRALLEVICALH---KLNIVHRDLKPENILLDDDMNIKLTDFG 169 (298)
T ss_dssp ECSSEEEEEEECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCT
T ss_pred ccCCeEEEEEeccCCCcHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCcceEEEcCCCcEEEeccc
Confidence 99999999999999999999998643 4899999999999999999995 4789999999999999999999999999
Q ss_pred cceecCCCCCcceeccccccccccCCcccC------CCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhh
Q 005278 561 ISKLLGEGDDSVIQTMTIATIGYMAPEYGS------EGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKES 634 (704)
Q Consensus 561 la~~~~~~~~~~~~~~~~gt~~y~aPE~~~------~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~ 634 (704)
++........ .....|++.|+|||++. ...++.++||||||+++|||++|+.||...... .....+...
T Consensus 170 ~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~--~~~~~~~~~ 244 (298)
T 1phk_A 170 FSCQLDPGEK---LREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQM--LMLRMIMSG 244 (298)
T ss_dssp TCEECCTTCC---BCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHT
T ss_pred chhhcCCCcc---cccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCccHH--HHHHHHhcC
Confidence 9987654322 23456899999999874 456889999999999999999999999653211 111111110
Q ss_pred cCCCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 635 LPDGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
... . ..+....++..+.+++.+||+.||++||++.|+++
T Consensus 245 ~~~-~-------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 283 (298)
T 1phk_A 245 NYQ-F-------------GSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALA 283 (298)
T ss_dssp CCC-C-------------CTTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred Ccc-c-------------CcccccccCHHHHHHHHHHccCCcccCCCHHHHHh
Confidence 000 0 00111234567889999999999999999999964
No 228
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.5e-37 Score=336.97 Aligned_cols=321 Identities=22% Similarity=0.247 Sum_probs=280.2
Q ss_pred CEEecCCCcCcccCCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCC-cccchhhcccccCCCCCCC
Q 005278 9 KYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMT-ESSAAKWNFLSSLTNCRNL 87 (704)
Q Consensus 9 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~~~~~~~~l~~L 87 (704)
+.++.+++.++ .+|. + .++|++|+|++|.++++.+..|.++++|++|+|++|.+.. ++. ..|.++++|
T Consensus 13 ~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~-------~~~~~l~~L 81 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRN-------NTFRGLSSL 81 (455)
T ss_dssp TEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECT-------TTTTTCTTC
T ss_pred cccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECc-------ccccccccC
Confidence 46888899998 6676 3 3889999999999999999999999999999999999863 333 348999999
Q ss_pred cEEEccCCCCcccCChhhhhcccccceEEecCCcccccCChh--hhcCCCCCEEEccCCcCccccChh-hcCCCCcCeee
Q 005278 88 TVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQE--IGNLSGMIVFDLNGCDLNGTIPTA-VGRLRRLQGLY 164 (704)
Q Consensus 88 ~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~ 164 (704)
++|+|++|++.+..|..|..+. +|++|++++|++++..+.. +.++++|++|+|++|.+.+..|.. +.++++|++|+
T Consensus 82 ~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 160 (455)
T 3v47_A 82 IILKLDYNQFLQLETGAFNGLA-NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLD 160 (455)
T ss_dssp CEEECTTCTTCEECTTTTTTCT-TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEE
T ss_pred CEEeCCCCccCccChhhccCcc-cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEe
Confidence 9999999999998899998874 7999999999999865555 999999999999999999887776 89999999999
Q ss_pred ccCcccCCCCCccccCC--CCCCEEEcCCCcCCccCCcc--------ccCcCCCCEEEecCccCCCCCCCcc--------
Q 005278 165 LHGNKLQGSIPYDLCHL--EGLSELNLNGNKLCGHVPPC--------LASLTSLRRLHLGSNKLTSTMPSSF-------- 226 (704)
Q Consensus 165 L~~n~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~--------~~~l~~L~~L~l~~n~l~~~~~~~~-------- 226 (704)
+++|++++..+..+..+ .+|+.|++++|.+.+..+.. +..+++|+.|++++|.+++..+..+
T Consensus 161 L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~ 240 (455)
T 3v47_A 161 LTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTK 240 (455)
T ss_dssp CTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCC
T ss_pred CCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccc
Confidence 99999998888888876 78999999999999655433 3366899999999998865333222
Q ss_pred -----------------------------c--CCccccEEEecCcccCCCCCcccccCcCCcEEEeecCccCCCCCCCcC
Q 005278 227 -----------------------------G--SLEYVLYINLSANSLNGSLPSNIQNLKVLTNLDLSRNQLSGDIPTTIG 275 (704)
Q Consensus 227 -----------------------------~--~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 275 (704)
. ..++|+.|++++|.+.+..|..+..+++|+.|++++|++++..|..|.
T Consensus 241 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 320 (455)
T 3v47_A 241 IQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW 320 (455)
T ss_dssp EEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred eeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhc
Confidence 1 126899999999999999999999999999999999999988899999
Q ss_pred CCCCcceeeccCceeeccCCcccccccccceEEecccCCCCCCCCCcccccccCcccccCCCccCC
Q 005278 276 GLENLETLSLADNQFQGPVPKSFGSLISLESLDLSRNNLSGEIPKNFSAQSFLSNYALCGPARLQV 341 (704)
Q Consensus 276 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~l~g~~~~~~ 341 (704)
++++|+.|+|++|.+++..|..+..+++|+.|++++|++++..|..|...+.+....+.++....+
T Consensus 321 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 386 (455)
T 3v47_A 321 GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV 386 (455)
T ss_dssp TCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccC
Confidence 999999999999999988899999999999999999999999899898888888888887765443
No 229
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=100.00 E-value=3.8e-38 Score=323.87 Aligned_cols=252 Identities=25% Similarity=0.302 Sum_probs=192.4
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCCCceEEeeeee----------
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQLERASRSFDSECEILRSIRHRNLIKIISNCCN---------- 482 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~---------- 482 (704)
.++|+..+.||+|+||.||+|+.. +++.||||++... ....+.+.+|+.++++++||||+++++++.+
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~ 83 (303)
T 1zy4_A 5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT-EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTA 83 (303)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC----
T ss_pred cccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc-HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhcc
Confidence 457899999999999999999964 7999999998643 3445678999999999999999999998865
Q ss_pred ---CCeEEEEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeee
Q 005278 483 ---IDFKALVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDF 559 (704)
Q Consensus 483 ---~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Df 559 (704)
....++||||+++|+|.+++......+++..++.++.|++.|++|||. .+|+||||||+||+++.++.+||+||
T Consensus 84 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH~---~~i~H~dlkp~Nil~~~~~~~kl~df 160 (303)
T 1zy4_A 84 VKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRLFRQILEALSYIHS---QGIIHRDLKPMNIFIDESRNVKIGDF 160 (303)
T ss_dssp --CEEEEEEEEECCCSCBHHHHHHHSCGGGCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECCC
T ss_pred cccCCceEEEEecCCCCCHHHhhhccccccchHHHHHHHHHHHHHHHHHHh---CCeecccCCHHhEEEcCCCCEEEeeC
Confidence 356789999999999999999777778899999999999999999954 68999999999999999999999999
Q ss_pred ccceecCCCCC------------cceeccccccccccCCcccCCC-CCCcccceeeHHHHHHHHhhCCCCCCcccccccc
Q 005278 560 GISKLLGEGDD------------SVIQTMTIATIGYMAPEYGSEG-IISPKSDVYSYGILLMETFTRKKPTNEIFIGEMS 626 (704)
Q Consensus 560 gla~~~~~~~~------------~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~ 626 (704)
|++........ ........||+.|+|||++.+. .++.++|||||||++|||++ ||......
T Consensus 161 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~~~~~~~--- 234 (303)
T 1zy4_A 161 GLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFSTGMER--- 234 (303)
T ss_dssp CCCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CCSSHHHH---
T ss_pred cchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---ccCCchhH---
Confidence 99987643211 1122344689999999998754 68999999999999999998 55431111
Q ss_pred HHHHHHhhcCCCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 627 LKHWVKESLPDGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
............ ...+ .....++..+.+++..||+.||++||++.|+++
T Consensus 235 -~~~~~~~~~~~~--~~~~---------~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 283 (303)
T 1zy4_A 235 -VNILKKLRSVSI--EFPP---------DFDDNKMKVEKKIIRLLIDHDPNKRPGARTLLN 283 (303)
T ss_dssp -HHHHHHHHSTTC--CCCT---------TCCTTTSHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred -HHHHHhcccccc--ccCc---------cccccchHHHHHHHHHHHhcCcccCcCHHHHhC
Confidence 111111100000 0000 011233456788999999999999999999976
No 230
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=100.00 E-value=3.7e-38 Score=337.13 Aligned_cols=264 Identities=21% Similarity=0.224 Sum_probs=200.4
Q ss_pred hCCCCccccccccCceEEEEEEE-CCCCEEEEEEeeccchhhhHHHHHHHHHHHhcC--------CCCCceEEeeee---
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTL-FDGTNVAIKVFNLQLERASRSFDSECEILRSIR--------HRNLIKIISNCC--- 481 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~--------h~niv~l~~~~~--- 481 (704)
.++|.+.+.||+|+||+||+|+. .+++.||||++... ....+.+.+|++++++++ |+||+++++++.
T Consensus 36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~ 114 (397)
T 1wak_A 36 NGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA-EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISG 114 (397)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEE
T ss_pred CCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC-CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecC
Confidence 36899999999999999999985 46899999998744 334567889999999995 788999999987
Q ss_pred -eCCeEEEEEeccCCCCHHHHHhhC-CCccCHHHHHHHHHHHHHHHHHHHhcCCC-CcEecCCCCCCeeeCCCC------
Q 005278 482 -NIDFKALVLEFMPNGSLEKWLYSH-NYFLGILERLNIMIDVGLALEYLHHGHST-PMVHCDLKPNNILLDENM------ 552 (704)
Q Consensus 482 -~~~~~~lv~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~-~ivH~dlk~~Nil~~~~~------ 552 (704)
.....++||||+ +|++.+++... ...+++..+..++.|++.||+|||. . +|+||||||+||+++.++
T Consensus 115 ~~~~~~~lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~---~~givHrDikp~NIll~~~~~~~~~~ 190 (397)
T 1wak_A 115 VNGTHICMVFEVL-GHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHT---KCRIIHTDIKPENILLSVNEQYIRRL 190 (397)
T ss_dssp TTEEEEEEEECCC-CCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHH---TTCEECCCCSGGGEEECCCHHHHHHH
T ss_pred CCCceEEEEEecc-CccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHeeEeccchhhhhh
Confidence 456789999999 55666666543 4568999999999999999999964 5 899999999999999775
Q ss_pred -------------------------------------------cEEEeeeccceecCCCCCcceeccccccccccCCccc
Q 005278 553 -------------------------------------------TAHVSDFGISKLLGEGDDSVIQTMTIATIGYMAPEYG 589 (704)
Q Consensus 553 -------------------------------------------~~kl~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~ 589 (704)
.+||+|||++...... .....||+.|+|||++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~-----~~~~~gt~~y~aPE~~ 265 (397)
T 1wak_A 191 AAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKH-----FTEDIQTRQYRSLEVL 265 (397)
T ss_dssp HHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBC-----SCSCCSCGGGCCHHHH
T ss_pred hhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEecccccccccccc-----CccCCCCCcccCChhh
Confidence 7999999999876432 2334689999999999
Q ss_pred CCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccH----HHHHHhhcCCCcch----------hccc----------
Q 005278 590 SEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSL----KHWVKESLPDGLTE----------VVDA---------- 645 (704)
Q Consensus 590 ~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~----~~~~~~~~~~~~~~----------~~~~---------- 645 (704)
.+..++.++|||||||++|||+||+.||.......... ...+.......... ....
T Consensus 266 ~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (397)
T 1wak_A 266 IGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKL 345 (397)
T ss_dssp HTSCCCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSSCCCC
T ss_pred cCCCCCcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccCCcccccccccc
Confidence 99999999999999999999999999997643322110 00000000000000 0000
Q ss_pred ---cc-hhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 646 ---NL-VREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 646 ---~~-~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
.. .........+...+..+.+++.+||+.||++|||++|+++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 391 (397)
T 1wak_A 346 KPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLR 391 (397)
T ss_dssp CCCCHHHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHT
T ss_pred CCcchhHhhhhhcccchhhHHHHHHHHHHHhccChhhcCCHHHHhh
Confidence 00 0000111223466788999999999999999999999964
No 231
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=100.00 E-value=2.2e-37 Score=323.64 Aligned_cols=263 Identities=21% Similarity=0.259 Sum_probs=201.4
Q ss_pred hCCCCccccccccCceEEEEEEE--CCCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCC------CCceEEeeeeeCCe
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTL--FDGTNVAIKVFNLQLERASRSFDSECEILRSIRHR------NLIKIISNCCNIDF 485 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~--~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~------niv~l~~~~~~~~~ 485 (704)
.++|++.+.||+|+||.||+|.. .+++.||||++... ....+.+.+|+++++.++|+ +++++++++...+.
T Consensus 13 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~ 91 (339)
T 1z57_A 13 SARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNV-DRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGH 91 (339)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTE
T ss_pred cCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecC-CchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCc
Confidence 46899999999999999999986 36889999998643 33456788999999999765 49999999999999
Q ss_pred EEEEEeccCCCCHHHHHhhCC-CccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCC--------------
Q 005278 486 KALVLEFMPNGSLEKWLYSHN-YFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDE-------------- 550 (704)
Q Consensus 486 ~~lv~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~-------------- 550 (704)
.++||||+ +++|.+++.... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.
T Consensus 92 ~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~ 167 (339)
T 1z57_A 92 ICIVFELL-GLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLH---SNKLTHTDLKPENILFVQSDYTEAYNPKIKRD 167 (339)
T ss_dssp EEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESCCCEEEEEC----CE
T ss_pred EEEEEcCC-CCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHH---HCCCcCCCCCHHHEEEeccccccccCCccccc
Confidence 99999999 889999998654 35889999999999999999995 468999999999999987
Q ss_pred -----CCcEEEeeeccceecCCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccc
Q 005278 551 -----NMTAHVSDFGISKLLGEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEM 625 (704)
Q Consensus 551 -----~~~~kl~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~ 625 (704)
++.+||+|||+++..... .....||+.|+|||++.+..++.++|||||||++|||++|+.||......+
T Consensus 168 ~~~~~~~~~kl~Dfg~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~- 241 (339)
T 1z57_A 168 ERTLINPDIKVVDFGSATYDDEH-----HSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDSKE- 241 (339)
T ss_dssp EEEESCCCEEECCCSSCEETTSC-----CCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSCHHH-
T ss_pred cccccCCCceEeeCcccccCccc-----cccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCCChHH-
Confidence 668999999999875432 233468999999999999999999999999999999999999997632211
Q ss_pred cHHHHHHhh--cCCCcchhcc-----------------------ccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCC
Q 005278 626 SLKHWVKES--LPDGLTEVVD-----------------------ANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRV 680 (704)
Q Consensus 626 ~~~~~~~~~--~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rp 680 (704)
......... .+........ ...............++..+.+++.+||+.||++||
T Consensus 242 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rp 321 (339)
T 1z57_A 242 HLAMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRI 321 (339)
T ss_dssp HHHHHHHHHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSC
T ss_pred HHHHHHHHhCCCCHHHHhhccchhHHhhccccccccccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCcCccccc
Confidence 111111100 0000000000 000000000112234567899999999999999999
Q ss_pred CHHHHHH
Q 005278 681 SMKDAAA 687 (704)
Q Consensus 681 t~~ev~~ 687 (704)
|+.|+++
T Consensus 322 t~~ell~ 328 (339)
T 1z57_A 322 TLREALK 328 (339)
T ss_dssp CHHHHTT
T ss_pred CHHHHhc
Confidence 9999953
No 232
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=100.00 E-value=4.3e-38 Score=334.90 Aligned_cols=262 Identities=23% Similarity=0.296 Sum_probs=192.8
Q ss_pred CCCCccccccccCceEEEEEEECCCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCC------eEEE
Q 005278 415 NGFNECNLLGTGSFGSVYKGTLFDGTNVAIKVFNLQLERASRSFDSECEILRSIRHRNLIKIISNCCNID------FKAL 488 (704)
Q Consensus 415 ~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~------~~~l 488 (704)
.+|...+.||+|+||+||+|+...+..||+|++.... +...+|+++++.++||||+++++++.... ..++
T Consensus 40 ~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~----~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~l 115 (394)
T 4e7w_A 40 IAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDK----RFKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNL 115 (394)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCT----TSCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEEE
T ss_pred ceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCc----chHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEEE
Confidence 4688899999999999999998777779999886432 22346999999999999999999985543 3789
Q ss_pred EEeccCCCCHHHHHh--hCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeC-CCCcEEEeeeccceec
Q 005278 489 VLEFMPNGSLEKWLY--SHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLD-ENMTAHVSDFGISKLL 565 (704)
Q Consensus 489 v~e~~~~gsL~~~l~--~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~-~~~~~kl~Dfgla~~~ 565 (704)
||||++++.+..... .....+++..+..++.|++.||+||| +.+|+||||||+||+++ .++.+||+|||+|+..
T Consensus 116 v~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~Nill~~~~~~~kL~DFG~a~~~ 192 (394)
T 4e7w_A 116 VLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIH---SIGICHRDIKPQNLLLDPPSGVLKLIDFGSAKIL 192 (394)
T ss_dssp EEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEETTTTEEEECCCTTCEEC
T ss_pred EeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCCHHHEEEcCCCCcEEEeeCCCcccc
Confidence 999998754433332 23456899999999999999999995 47899999999999999 7999999999999876
Q ss_pred CCCCCcceeccccccccccCCcccCCC-CCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcc--hh
Q 005278 566 GEGDDSVIQTMTIATIGYMAPEYGSEG-IISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLT--EV 642 (704)
Q Consensus 566 ~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~ 642 (704)
..... .....||+.|+|||++.+. .++.++||||+||++|||++|+.||.+.... ..+....+........ ..
T Consensus 193 ~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~-~~l~~i~~~~g~p~~~~~~~ 268 (394)
T 4e7w_A 193 IAGEP---NVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESGI-DQLVEIIKVLGTPSREQIKT 268 (394)
T ss_dssp CTTCC---CCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHHHCCCCHHHHHH
T ss_pred cCCCC---CcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHHhCCCCHHHHHh
Confidence 44332 2345689999999988664 5899999999999999999999999763221 1122222211111000 00
Q ss_pred cccc--------chhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 643 VDAN--------LVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 643 ~~~~--------~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
.++. .............++.++.+++.+||+.||++|||+.|+++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 321 (394)
T 4e7w_A 269 MNPNYMEHKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALC 321 (394)
T ss_dssp HCGGGSSSCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred hChhhhhhccccccCCcHHHhccccCCHHHHHHHHHHhCCChhhCCCHHHHhc
Confidence 0000 00000001111234567899999999999999999999964
No 233
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=7.8e-37 Score=345.54 Aligned_cols=181 Identities=24% Similarity=0.240 Sum_probs=104.2
Q ss_pred CCCCcCeeeccCcccCCC--CCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCC-CcccCCccc
Q 005278 156 RLRRLQGLYLHGNKLQGS--IPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMP-SSFGSLEYV 232 (704)
Q Consensus 156 ~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L 232 (704)
.+++|++|++++|++++. .|..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+.+..+ ..+..+++|
T Consensus 348 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 426 (606)
T 3vq2_A 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL 426 (606)
T ss_dssp CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC
T ss_pred cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccC
Confidence 344555555555555533 2555556666666666666655 234555566666666666666655544 455556666
Q ss_pred cEEEecCcccCCCCCcccccCcCCcEEEeecCccCC-CCCCCcCCCCCcceeeccCceeeccCCcccccccccceEEecc
Q 005278 233 LYINLSANSLNGSLPSNIQNLKVLTNLDLSRNQLSG-DIPTTIGGLENLETLSLADNQFQGPVPKSFGSLISLESLDLSR 311 (704)
Q Consensus 233 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~ 311 (704)
++|++++|.+.+..|..+..+++|+.|++++|++++ .+|..++.+++|+.|+|++|++++..|..+..+++|+.|++++
T Consensus 427 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 506 (606)
T 3vq2_A 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506 (606)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCC
Confidence 666666666655555556666666666666666654 2455555666666666666666655555566666666666666
Q ss_pred cCCCCCCCCCcccccccCcccccCCC
Q 005278 312 NNLSGEIPKNFSAQSFLSNYALCGPA 337 (704)
Q Consensus 312 N~l~~~~p~~~~~~~~l~~~~l~g~~ 337 (704)
|++++..|..|...+.+....+.++.
T Consensus 507 N~l~~~~~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 507 NNLLFLDSSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp SCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred CcCCCcCHHHccCCCcCCEEECCCCc
Confidence 66665555555555555555555544
No 234
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=100.00 E-value=3.2e-38 Score=332.15 Aligned_cols=262 Identities=21% Similarity=0.271 Sum_probs=182.1
Q ss_pred hCCCCccccccccCceEEEEEEE-CCCCEEEEEEeeccc--hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeC------C
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTL-FDGTNVAIKVFNLQL--ERASRSFDSECEILRSIRHRNLIKIISNCCNI------D 484 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~------~ 484 (704)
.++|...+.||+|+||.||+|.. .+|+.||||++.... ....+.+.+|+++++.++||||+++++++... .
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~ 107 (367)
T 2fst_X 28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN 107 (367)
T ss_dssp ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCC
Confidence 46899999999999999999985 468999999986532 23456788999999999999999999998654 5
Q ss_pred eEEEEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeecccee
Q 005278 485 FKALVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKL 564 (704)
Q Consensus 485 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~ 564 (704)
..++|+||+ +++|.+++... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.
T Consensus 108 ~~~lv~e~~-~~~L~~~~~~~--~l~~~~~~~i~~qi~~aL~~LH---~~givH~Dlkp~NIll~~~~~~kL~DFG~a~~ 181 (367)
T 2fst_X 108 DVYLVTHLM-GADLNNIVKCQ--KLTDDHVQFLIYQILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARH 181 (367)
T ss_dssp CCEEEEECC-CEECC-----C--CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECC------
T ss_pred eEEEEeccc-CCCHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHhhEEECCCCCEEEeecccccc
Confidence 679999999 68999988753 4899999999999999999995 57899999999999999999999999999986
Q ss_pred cCCCCCcceeccccccccccCCcccCC-CCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCC---cc
Q 005278 565 LGEGDDSVIQTMTIATIGYMAPEYGSE-GIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDG---LT 640 (704)
Q Consensus 565 ~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~---~~ 640 (704)
.... .....||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+.... ..+........... +.
T Consensus 182 ~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~-~~l~~i~~~~g~p~~~~~~ 255 (367)
T 2fst_X 182 TADE-----MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHI-DQLKLILRLVGTPGAELLK 255 (367)
T ss_dssp --------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSHH-HHHHHHHHHHCSCCHHHHT
T ss_pred cccc-----CCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHHhCCCCHHHHH
Confidence 5432 234578999999998876 67899999999999999999999999763221 11111111110000 00
Q ss_pred hhccc-------cchh--hhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 641 EVVDA-------NLVR--EEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 641 ~~~~~-------~~~~--~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
.+... .+.. ...........+..+.+++.+||+.||++|||+.|+++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~ 311 (367)
T 2fst_X 256 KISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALA 311 (367)
T ss_dssp TCCCHHHHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HhhhHHHHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhc
Confidence 00000 0000 00000011133567889999999999999999999965
No 235
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=100.00 E-value=6.2e-38 Score=325.01 Aligned_cols=266 Identities=20% Similarity=0.265 Sum_probs=193.9
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCCCceEEeeee-----------
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQLERASRSFDSECEILRSIRHRNLIKIISNCC----------- 481 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~----------- 481 (704)
.++|...+.||+|+||.||+|+.. +++.||||++........+.+.+|++++++++||||+++++++.
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~ 89 (320)
T 2i6l_A 10 GSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVG 89 (320)
T ss_dssp TTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC---
T ss_pred CCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccccc
Confidence 468899999999999999999975 58999999987665556678999999999999999999999873
Q ss_pred ---eCCeEEEEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeC-CCCcEEEe
Q 005278 482 ---NIDFKALVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLD-ENMTAHVS 557 (704)
Q Consensus 482 ---~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~-~~~~~kl~ 557 (704)
+....++||||++ |+|.+++... .+++..+..++.|++.||+||| +.+|+||||||+||+++ +++.+||+
T Consensus 90 ~~~~~~~~~lv~e~~~-~~L~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~kl~ 163 (320)
T 2i6l_A 90 SLTELNSVYIVQEYME-TDLANVLEQG--PLLEEHARLFMYQLLRGLKYIH---SANVLHRDLKPANLFINTEDLVLKIG 163 (320)
T ss_dssp -CCSCSEEEEEEECCS-EEHHHHHTTC--CCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEEETTTTEEEEC
T ss_pred cccccCceeEEeeccC-CCHHHHhhcC--CccHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEEcCCCCeEEEc
Confidence 3467899999997 6999998753 4889999999999999999995 46899999999999997 56799999
Q ss_pred eeccceecCCCCC-cceeccccccccccCCcccCC-CCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhc
Q 005278 558 DFGISKLLGEGDD-SVIQTMTIATIGYMAPEYGSE-GIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESL 635 (704)
Q Consensus 558 Dfgla~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~ 635 (704)
|||+++....... ........+|+.|+|||.+.+ ..++.++||||||+++|||++|+.||.+....+ .... +....
T Consensus 164 Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~-~~~~-~~~~~ 241 (320)
T 2i6l_A 164 DFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELE-QMQL-ILESI 241 (320)
T ss_dssp CCTTCBCC--------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHH-HHHHS
T ss_pred cCccccccCCCcccccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCHHH-HHHH-HHHhc
Confidence 9999987643211 112233467999999998754 678999999999999999999999997632211 1111 11111
Q ss_pred CCCcc----hh-------ccccchh-hhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 636 PDGLT----EV-------VDANLVR-EEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 636 ~~~~~----~~-------~~~~~~~-~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
+.... +. ....... ..........++.++.+++.+||+.||++||++.|+++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 305 (320)
T 2i6l_A 242 PVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEALS 305 (320)
T ss_dssp CCCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred CCCchhhhhhhhhcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhC
Confidence 11000 00 0000000 00001111235678899999999999999999999965
No 236
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=100.00 E-value=1.4e-37 Score=323.20 Aligned_cols=267 Identities=24% Similarity=0.302 Sum_probs=200.8
Q ss_pred HhCCCCccccccccCceEEEEEEE--CCCCEEEEEEeeccch--hhhHHHHHHHHHHHhc---CCCCCceEEeeee----
Q 005278 413 ATNGFNECNLLGTGSFGSVYKGTL--FDGTNVAIKVFNLQLE--RASRSFDSECEILRSI---RHRNLIKIISNCC---- 481 (704)
Q Consensus 413 ~~~~~~~~~~ig~G~~g~V~~~~~--~~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l---~h~niv~l~~~~~---- 481 (704)
+.++|+..+.||+|+||.||+|+. .+|+.||+|++..... .....+.+|+.+++.+ +||||+++++++.
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~ 88 (326)
T 1blx_A 9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT 88 (326)
T ss_dssp GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC
T ss_pred chhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeeccc
Confidence 457899999999999999999997 4688999999875432 2234567788877776 8999999999987
Q ss_pred -eCCeEEEEEeccCCCCHHHHHhhCC-CccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeee
Q 005278 482 -NIDFKALVLEFMPNGSLEKWLYSHN-YFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDF 559 (704)
Q Consensus 482 -~~~~~~lv~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Df 559 (704)
.....++||||++ |+|.+++.... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+||
T Consensus 89 ~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~gi~H~dlkp~Nili~~~~~~kl~Df 164 (326)
T 1blx_A 89 DRETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLH---SHRVVHRDLKPQNILVTSSGQIKLADF 164 (326)
T ss_dssp SSEEEEEEEEECCS-CBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECSC
T ss_pred CCCceEEEEEecCC-CCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCCHHHeEEcCCCCEEEecC
Confidence 4567899999997 69999998643 44899999999999999999995 468999999999999999999999999
Q ss_pred ccceecCCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCC-
Q 005278 560 GISKLLGEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDG- 638 (704)
Q Consensus 560 gla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~- 638 (704)
|+++..... .......||+.|+|||++.+..++.++|||||||++|||++|+.||.+....+ .+...........
T Consensus 165 g~~~~~~~~---~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-~~~~i~~~~~~~~~ 240 (326)
T 1blx_A 165 GLARIYSFQ---MALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVD-QLGKILDVIGLPGE 240 (326)
T ss_dssp CSCCCCCGG---GGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCCCCG
T ss_pred cccccccCC---CCccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCHHH-HHHHHHHHcCCCCc
Confidence 999865422 12334568999999999999899999999999999999999999997632211 1111111110000
Q ss_pred --cchhcc-c--cch--hhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 639 --LTEVVD-A--NLV--REEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 639 --~~~~~~-~--~~~--~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
+..... + .+. ...........++..+.+++.+||+.||++||++.|+++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 296 (326)
T 1blx_A 241 EDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS 296 (326)
T ss_dssp GGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred ccCccccccchhhhcccCcchhhhccccCCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 000000 0 000 000001112244567889999999999999999999964
No 237
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.7e-37 Score=348.04 Aligned_cols=331 Identities=18% Similarity=0.258 Sum_probs=247.4
Q ss_pred CCCCCCCEEecCCCcCccc-----------------CCcccc--CCCCCCEEeccCccccccCchhhcCCCCCCEEeccc
Q 005278 3 YMLPNLKYLTLFDNKLSGT-----------------IPNSIT--NASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAY 63 (704)
Q Consensus 3 ~~l~~l~~L~l~~~~i~~~-----------------~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 63 (704)
+.+++|++|+|++|.+++. +|..++ ++++|++|+|++|.+.+.+|..|.++++|++|+|++
T Consensus 203 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 282 (636)
T 4eco_A 203 MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC 282 (636)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTT
T ss_pred hcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcC
Confidence 4688999999999999975 899988 999999999999999988999999999999999999
Q ss_pred cc-CCC-cccchhhcccccCCCCCCCcEEEccCCCCcccCCh--hhhhcccccceEEecCCcccccCChhhhcCCCCCEE
Q 005278 64 NY-LMT-ESSAAKWNFLSSLTNCRNLTVLGLASNPLRGILPP--LIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGMIVF 139 (704)
Q Consensus 64 n~-i~~-~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 139 (704)
|+ ++. ..+.. +.-...+..+++|++|+|++|+++ .+|. .+..+. +|++|++++|.+++.+| .++++++|++|
T Consensus 283 n~~l~~~~lp~~-~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~-~L~~L~L~~N~l~g~ip-~~~~l~~L~~L 358 (636)
T 4eco_A 283 NRGISGEQLKDD-WQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMK-KLGMLECLYNQLEGKLP-AFGSEIKLASL 358 (636)
T ss_dssp CTTSCHHHHHHH-HHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCT-TCCEEECCSCCCEEECC-CCEEEEEESEE
T ss_pred CCCCccccchHH-HHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCC-CCCEEeCcCCcCccchh-hhCCCCCCCEE
Confidence 98 764 21111 000001223478888888888888 6676 677764 68888888888887777 78888888888
Q ss_pred EccCCcCccccChhhcCCCC-cCeeeccCcccCCCCCccccCCC--CCCEEEcCCCcCCccCCcccc-------CcCCCC
Q 005278 140 DLNGCDLNGTIPTAVGRLRR-LQGLYLHGNKLQGSIPYDLCHLE--GLSELNLNGNKLCGHVPPCLA-------SLTSLR 209 (704)
Q Consensus 140 ~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~~~~-------~l~~L~ 209 (704)
+|++|.++ .+|..+..+++ |++|++++|+++ .+|..+..++ +|++|++++|++++..|..+. .+++|+
T Consensus 359 ~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~ 436 (636)
T 4eco_A 359 NLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS 436 (636)
T ss_dssp ECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEE
T ss_pred ECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCC
Confidence 88888888 67777888887 888888888887 6777766654 788888888888877777777 667888
Q ss_pred EEEecCccCCCCCCCcccCCccccEEEecCcccCCCCCcc-cccC-------cCCcEEEeecCccCCCCCCCcC--CCCC
Q 005278 210 RLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLNGSLPSN-IQNL-------KVLTNLDLSRNQLSGDIPTTIG--GLEN 279 (704)
Q Consensus 210 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~l-------~~L~~L~l~~n~l~~~~~~~~~--~l~~ 279 (704)
.|++++|.++...+..+..+++|++|+|++|.++ .+|.. +... ++|+.|++++|+++ .+|..+. .+++
T Consensus 437 ~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~ 514 (636)
T 4eco_A 437 SINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPY 514 (636)
T ss_dssp EEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTT
T ss_pred EEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCC
Confidence 8888888887444444556778888888888877 44443 3222 27888888888887 6776665 7788
Q ss_pred cceeeccCceeeccCCcccccccccceEEe------cccCCCCCCCCCcccccccCcccccCCCccCCC
Q 005278 280 LETLSLADNQFQGPVPKSFGSLISLESLDL------SRNNLSGEIPKNFSAQSFLSNYALCGPARLQVP 342 (704)
Q Consensus 280 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l------~~N~l~~~~p~~~~~~~~l~~~~l~g~~~~~~~ 342 (704)
|+.|+|++|++++ +|..+..+++|+.|++ ++|++.+.+|..+...+.+....+.++....+|
T Consensus 515 L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip 582 (636)
T 4eco_A 515 LVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVN 582 (636)
T ss_dssp CCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCC
T ss_pred cCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccC
Confidence 8888888888875 7777777888888887 456677777777777777777777766654443
No 238
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=100.00 E-value=6.4e-38 Score=336.31 Aligned_cols=261 Identities=24% Similarity=0.281 Sum_probs=192.8
Q ss_pred CCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCCCceEEeeeeeC------CeEE
Q 005278 415 NGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQLERASRSFDSECEILRSIRHRNLIKIISNCCNI------DFKA 487 (704)
Q Consensus 415 ~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~------~~~~ 487 (704)
.+|+..+.||+|+||.||+|+.. +|+.||||++.... +...+|+++++.++||||+++++++... ...+
T Consensus 54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~----~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~ 129 (420)
T 1j1b_A 54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK----RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLN 129 (420)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCT----TSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEE
T ss_pred ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccc----hhHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEE
Confidence 36888899999999999999975 69999999986432 2234799999999999999999998542 2367
Q ss_pred EEEeccCCCCHHHHHh---hCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCC-CcEEEeeeccce
Q 005278 488 LVLEFMPNGSLEKWLY---SHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDEN-MTAHVSDFGISK 563 (704)
Q Consensus 488 lv~e~~~~gsL~~~l~---~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~-~~~kl~Dfgla~ 563 (704)
+||||+++ ++.+.+. .....+++..+..++.|++.||+||| +.+|+||||||+||+++.+ +.+||+|||+++
T Consensus 130 lv~e~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NILl~~~~~~~kl~DFG~a~ 205 (420)
T 1j1b_A 130 LVLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH---SFGICHRDIKPQNLLLDPDTAVLKLCDFGSAK 205 (420)
T ss_dssp EEEECCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred eehhcccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChhhEEEeCCCCeEEeccchhhh
Confidence 89999975 6766654 34566899999999999999999995 5789999999999999965 578999999998
Q ss_pred ecCCCCCcceeccccccccccCCcccCCC-CCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCC----
Q 005278 564 LLGEGDDSVIQTMTIATIGYMAPEYGSEG-IISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDG---- 638 (704)
Q Consensus 564 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~---- 638 (704)
.+..... .....||+.|+|||++.+. .++.++|||||||++|||++|+.||.+.... ..+...++..-...
T Consensus 206 ~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~~-~~l~~i~~~lg~p~~~~~ 281 (420)
T 1j1b_A 206 QLVRGEP---NVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGV-DQLVEIIKVLGTPTREQI 281 (420)
T ss_dssp ECCTTCC---CCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHHHCSCCHHHH
T ss_pred hcccCCC---ceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHHhCCCCHHHH
Confidence 7654322 2335689999999988664 7999999999999999999999999763221 12222222111110
Q ss_pred ------cchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 639 ------LTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 639 ------~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
..+...+.+....-........+.++.+++.+||+.||++||++.|+++
T Consensus 282 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~ 336 (420)
T 1j1b_A 282 REMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACA 336 (420)
T ss_dssp HHHCSCCCCCCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HhhChhhhhhccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChhHCCCHHHHhC
Confidence 0000000000000000011233567899999999999999999999964
No 239
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=6.9e-37 Score=345.84 Aligned_cols=320 Identities=19% Similarity=0.271 Sum_probs=282.6
Q ss_pred CCCCCCEEecCCCcCcccCCccccCCCCCCEEeccCcc-ccc-cCchhhcCC------CCCCEEecccccCCCcccchhh
Q 005278 4 MLPNLKYLTLFDNKLSGTIPNSITNASKLIMLDLSSNS-FSG-LIPNTFGNL------GSLQVLSLAYNYLMTESSAAKW 75 (704)
Q Consensus 4 ~l~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~-i~~-~~~~~~~~l------~~L~~L~L~~n~i~~~~~~~~~ 75 (704)
.+++|++|+|++|.+.+.+|..|.++++|++|+|++|. +++ .+|..+..+ ++|++|+|++|.++.++..
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~--- 323 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVE--- 323 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCH---
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCch---
Confidence 78999999999999999999999999999999999998 998 789888887 9999999999999854430
Q ss_pred cccccCCCCCCCcEEEccCCCCcccCChhhhhcccccceEEecCCcccccCChhhhcCCC-CCEEEccCCcCccccChhh
Q 005278 76 NFLSSLTNCRNLTVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSG-MIVFDLNGCDLNGTIPTAV 154 (704)
Q Consensus 76 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~ 154 (704)
..+.++++|++|+|++|++.+.+| .+..+. +|++|++++|+++ .+|..+.++++ |++|++++|.++ .+|..+
T Consensus 324 ---~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~-~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~ 396 (636)
T 4eco_A 324 ---TSLQKMKKLGMLECLYNQLEGKLP-AFGSEI-KLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIF 396 (636)
T ss_dssp ---HHHTTCTTCCEEECCSCCCEEECC-CCEEEE-EESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCC
T ss_pred ---hhhccCCCCCEEeCcCCcCccchh-hhCCCC-CCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhh
Confidence 048999999999999999998888 777764 7999999999999 88888999999 999999999999 788888
Q ss_pred cCCC--CcCeeeccCcccCCCCCcccc-------CCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCCc
Q 005278 155 GRLR--RLQGLYLHGNKLQGSIPYDLC-------HLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSS 225 (704)
Q Consensus 155 ~~l~--~L~~L~L~~n~l~~~~~~~l~-------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 225 (704)
..++ +|+.|++++|++++..|..+. .+++|++|+|++|+++...+..+..+++|+.|++++|.++...+..
T Consensus 397 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~ 476 (636)
T 4eco_A 397 DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNS 476 (636)
T ss_dssp CTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSS
T ss_pred hhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHH
Confidence 7765 999999999999999998888 8889999999999999544445667999999999999999444344
Q ss_pred ccCC-------ccccEEEecCcccCCCCCcccc--cCcCCcEEEeecCccCCCCCCCcCCCCCcceeec------cCcee
Q 005278 226 FGSL-------EYVLYINLSANSLNGSLPSNIQ--NLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSL------ADNQF 290 (704)
Q Consensus 226 ~~~l-------~~L~~L~l~~N~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L------~~n~l 290 (704)
+... ++|+.|+|++|.++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+| ++|++
T Consensus 477 ~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l 554 (636)
T 4eco_A 477 LKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRT 554 (636)
T ss_dssp SEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBC
T ss_pred hccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcc
Confidence 4433 39999999999999 7888887 99999999999999996 8999999999999999 56888
Q ss_pred eccCCcccccccccceEEecccCCCCCCCCCcccccccCcccccCCCc
Q 005278 291 QGPVPKSFGSLISLESLDLSRNNLSGEIPKNFSAQSFLSNYALCGPAR 338 (704)
Q Consensus 291 ~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~l~g~~~ 338 (704)
.+.+|..+..+++|+.|++++|++ +.+|..+. +.+....+.+++.
T Consensus 555 ~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l 599 (636)
T 4eco_A 555 LREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPN 599 (636)
T ss_dssp CCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTT
T ss_pred cccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCC
Confidence 999999999999999999999999 77887655 5677777777763
No 240
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.4e-36 Score=331.10 Aligned_cols=320 Identities=22% Similarity=0.208 Sum_probs=291.5
Q ss_pred CCEEecCCCcCcccCCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccCCCCCCC
Q 005278 8 LKYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTNCRNL 87 (704)
Q Consensus 8 l~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~l~~L 87 (704)
-+.++.+++.++ .+|..+. ++++.|+|++|.++++.+..|.++++|++|+|++|.++.+.... |.++++|
T Consensus 13 ~~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-------~~~l~~L 82 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGA-------FNNLFNL 82 (477)
T ss_dssp TTEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT-------TTTCTTC
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhh-------hhCCccC
Confidence 367899999998 6787664 68999999999999999999999999999999999998876544 9999999
Q ss_pred cEEEccCCCCcccCChhhhhcccccceEEecCCcccccCChhhhcCCCCCEEEccCCcCccccChhhcCCCCcCeeeccC
Q 005278 88 TVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNGTIPTAVGRLRRLQGLYLHG 167 (704)
Q Consensus 88 ~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 167 (704)
++|+|++|++....+..|..+ ++|++|+|++|.+.+..+..|.++++|++|+|++|.+.+..+..|.++++|++|+|++
T Consensus 83 ~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 161 (477)
T 2id5_A 83 RTLGLRSNRLKLIPLGVFTGL-SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK 161 (477)
T ss_dssp CEEECCSSCCCSCCTTSSTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEES
T ss_pred CEEECCCCcCCccCcccccCC-CCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCC
Confidence 999999999997766667776 4799999999999999999999999999999999999988899999999999999999
Q ss_pred cccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCcccCCCCC
Q 005278 168 NKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLNGSLP 247 (704)
Q Consensus 168 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 247 (704)
|++++..+..+..+++|+.|+|++|.+++..+..|..+++|+.|++++|.+.+..+.......+|+.|++++|.++...+
T Consensus 162 n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 241 (477)
T 2id5_A 162 CNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY 241 (477)
T ss_dssp CCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCH
T ss_pred CcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCH
Confidence 99997666779999999999999999998888899999999999999998887777777777799999999999996655
Q ss_pred cccccCcCCcEEEeecCccCCCCCCCcCCCCCcceeeccCceeeccCCcccccccccceEEecccCCCCCCCCCcccccc
Q 005278 248 SNIQNLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSLADNQFQGPVPKSFGSLISLESLDLSRNNLSGEIPKNFSAQSF 327 (704)
Q Consensus 248 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~ 327 (704)
..+..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..|..|..+++|+.|++++|.+++..+..|...+.
T Consensus 242 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 321 (477)
T 2id5_A 242 LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGN 321 (477)
T ss_dssp HHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGG
T ss_pred HHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcc
Confidence 78999999999999999999888888999999999999999999999999999999999999999999877777888888
Q ss_pred cCcccccCCCc
Q 005278 328 LSNYALCGPAR 338 (704)
Q Consensus 328 l~~~~l~g~~~ 338 (704)
+....+.+++.
T Consensus 322 L~~L~l~~N~l 332 (477)
T 2id5_A 322 LETLILDSNPL 332 (477)
T ss_dssp CCEEECCSSCE
T ss_pred cCEEEccCCCc
Confidence 88888888774
No 241
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=100.00 E-value=1.6e-37 Score=326.65 Aligned_cols=267 Identities=24% Similarity=0.251 Sum_probs=198.8
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccc-hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeC-----CeE
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL-ERASRSFDSECEILRSIRHRNLIKIISNCCNI-----DFK 486 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~-----~~~ 486 (704)
.++|...+.||+|+||.||+|+.. +|+.||||++.... ......+.+|++++++++||||+++++++... ...
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 89 (353)
T 2b9h_A 10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEV 89 (353)
T ss_dssp CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCE
T ss_pred ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceE
Confidence 468999999999999999999965 68999999986433 33456788999999999999999999988654 678
Q ss_pred EEEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecC
Q 005278 487 ALVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLG 566 (704)
Q Consensus 487 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~ 566 (704)
++||||+. |+|.+++... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++...
T Consensus 90 ~lv~e~~~-~~L~~~~~~~--~~~~~~~~~~~~qi~~~L~~LH---~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~ 163 (353)
T 2b9h_A 90 YIIQELMQ-TDLHRVISTQ--MLSDDHIQYFIYQTLRAVKVLH---GSNVIHRDLKPSNLLINSNCDLKVCDFGLARIID 163 (353)
T ss_dssp EEEECCCS-EEHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred EEEEeccC-ccHHHHHhhc--CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEEcCCCcEEEEecccccccc
Confidence 99999997 6999998764 4899999999999999999995 4689999999999999999999999999998775
Q ss_pred CCCCcc--------eeccccccccccCCcccC-CCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhh-cC
Q 005278 567 EGDDSV--------IQTMTIATIGYMAPEYGS-EGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKES-LP 636 (704)
Q Consensus 567 ~~~~~~--------~~~~~~gt~~y~aPE~~~-~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~-~~ 636 (704)
...... ......||+.|+|||++. +..++.++|||||||++|||++|+.||.+...... +....... .+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~-~~~~~~~~~~~ 242 (353)
T 2b9h_A 164 ESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQ-LLLIFGIIGTP 242 (353)
T ss_dssp ----------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHH-HHHHHHHHCCC
T ss_pred cccccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCcHHH-HHHHHHHhCCC
Confidence 432111 112346899999999765 47789999999999999999999999976322111 11111100 00
Q ss_pred C--C-cchhccccchh---------hhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 637 D--G-LTEVVDANLVR---------EEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 637 ~--~-~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
. . ........... ..........++..+.+++.+||+.||++|||++|+++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 305 (353)
T 2b9h_A 243 HSDNDLRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALE 305 (353)
T ss_dssp CSTTTTTTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred chhccccccccchhhHHhhcccCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence 0 0 00000000000 00001111245677889999999999999999999965
No 242
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=100.00 E-value=2.3e-37 Score=315.30 Aligned_cols=252 Identities=23% Similarity=0.278 Sum_probs=201.4
Q ss_pred HHhCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccc--hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEE
Q 005278 412 RATNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL--ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKAL 488 (704)
Q Consensus 412 ~~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 488 (704)
...++|++.+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|++++++++||||+++++++.+.+..++
T Consensus 19 ~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 98 (287)
T 2wei_A 19 TFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYI 98 (287)
T ss_dssp HHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred HHhhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEE
Confidence 34568999999999999999999965 78999999987543 2345678999999999999999999999999999999
Q ss_pred EEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCC---CcEEEeeeccceec
Q 005278 489 VLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDEN---MTAHVSDFGISKLL 565 (704)
Q Consensus 489 v~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~---~~~kl~Dfgla~~~ 565 (704)
||||+++++|.+++.... .+++..++.++.|++.|++||| +.+|+||||||+||+++.+ +.+||+|||++...
T Consensus 99 v~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~~ 174 (287)
T 2wei_A 99 VGELYTGGELFDEIIKRK-RFSEHDAARIIKQVFSGITYMH---KHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCF 174 (287)
T ss_dssp EECCCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESCSSTTCCEEECSTTGGGTB
T ss_pred EEEccCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCChhhEEEecCCCcccEEEeccCcceee
Confidence 999999999999887554 4899999999999999999995 4689999999999999754 47999999999876
Q ss_pred CCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccc
Q 005278 566 GEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDA 645 (704)
Q Consensus 566 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (704)
..... .....||+.|+|||.+.+. ++.++||||||+++|+|++|+.||...... .....+......
T Consensus 175 ~~~~~---~~~~~~~~~y~aPE~~~~~-~~~~~Di~slG~~l~~l~~g~~p~~~~~~~--~~~~~~~~~~~~-------- 240 (287)
T 2wei_A 175 QQNTK---MKDRIGTAYYIAPEVLRGT-YDEKCDVWSAGVILYILLSGTPPFYGKNEY--DILKRVETGKYA-------- 240 (287)
T ss_dssp CCCSS---CSCHHHHHTTCCHHHHTTC-CCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHCCCC--------
T ss_pred cCCCc---cccccCcccccChHHhcCC-CCCchhhHhHHHHHHHHHhCCCCCCCCCHH--HHHHHHHcCCCC--------
Confidence 43321 2234589999999987754 889999999999999999999999763211 111111110000
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 646 NLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
...+....++..+.+++.+|++.||++||++.|+++
T Consensus 241 ------~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 276 (287)
T 2wei_A 241 ------FDLPQWRTISDDAKDLIRKMLTFHPSLRITATQCLE 276 (287)
T ss_dssp ------CCSGGGTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred ------CCchhhhhcCHHHHHHHHHHcccChhhCcCHHHHhc
Confidence 000111234567889999999999999999999976
No 243
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.9e-36 Score=339.85 Aligned_cols=323 Identities=20% Similarity=0.215 Sum_probs=290.3
Q ss_pred CCCCEEecCCCcCcccCCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccCCCCC
Q 005278 6 PNLKYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTNCR 85 (704)
Q Consensus 6 ~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~l~ 85 (704)
+++++|+|++|.++++.|..|.++++|++|+|++|.++++.|.+|.++++|++|+|++|+++...... |.+++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-------~~~l~ 105 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETA-------LSGPK 105 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTT-------TSSCT
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhh-------hcccc
Confidence 57999999999999888999999999999999999999999999999999999999999998765544 99999
Q ss_pred CCcEEEccCCCCcccCChhhhhcccccceEEecCCcccccCChhhhcCCCCCEEEccCCcCccccChhhcCCCCcC--ee
Q 005278 86 NLTVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNGTIPTAVGRLRRLQ--GL 163 (704)
Q Consensus 86 ~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~--~L 163 (704)
+|++|+|++|++.+..+..+..+. +|++|++++|.+.+.....+..+++|++|++++|.+.+..+..|+.+++|+ .|
T Consensus 106 ~L~~L~L~~n~i~~l~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L 184 (606)
T 3t6q_A 106 ALKHLFFIQTGISSIDFIPLHNQK-TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSL 184 (606)
T ss_dssp TCCEEECTTSCCSCGGGSCCTTCT-TCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEE
T ss_pred cccEeeccccCcccCCcchhccCC-cccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEE
Confidence 999999999999987777787764 799999999999986655666699999999999999988899999999999 89
Q ss_pred eccCcccCCCCCccccCC---------------------------------------------------CCCCEEEcCCC
Q 005278 164 YLHGNKLQGSIPYDLCHL---------------------------------------------------EGLSELNLNGN 192 (704)
Q Consensus 164 ~L~~n~l~~~~~~~l~~l---------------------------------------------------~~L~~L~L~~n 192 (704)
++++|++++..|..+... .+|+.|++++|
T Consensus 185 ~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n 264 (606)
T 3t6q_A 185 NLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH 264 (606)
T ss_dssp ECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTC
T ss_pred ecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecC
Confidence 999999997666554331 16888999999
Q ss_pred cCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCcccCCCCCcccccCcCCcEEEeecCccCCCCCC
Q 005278 193 KLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLNGSLPSNIQNLKVLTNLDLSRNQLSGDIPT 272 (704)
Q Consensus 193 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 272 (704)
.+++..+..|..+++|+.|++++|.++ .+|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.++.
T Consensus 265 ~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 343 (606)
T 3t6q_A 265 YFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT 343 (606)
T ss_dssp CCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCS
T ss_pred ccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccch
Confidence 999877888999999999999999998 6888899999999999999999988888999999999999999999877765
Q ss_pred -CcCCCCCcceeeccCceeeccC--CcccccccccceEEecccCCCCCCCCCcccccccCcccccCCC
Q 005278 273 -TIGGLENLETLSLADNQFQGPV--PKSFGSLISLESLDLSRNNLSGEIPKNFSAQSFLSNYALCGPA 337 (704)
Q Consensus 273 -~~~~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~l~g~~ 337 (704)
.+..+++|+.|++++|.+++.. |..+..+++|+.|++++|++.+..|..|...+.+....+.++.
T Consensus 344 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 411 (606)
T 3t6q_A 344 GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411 (606)
T ss_dssp STTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC
T ss_pred hhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc
Confidence 5899999999999999999766 7889999999999999999999888888888877777776664
No 244
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.3e-36 Score=343.85 Aligned_cols=160 Identities=26% Similarity=0.258 Sum_probs=127.9
Q ss_pred ccCCCCCCEEEcCCCcCCcc--CCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCcccCCCCC-cccccCc
Q 005278 178 LCHLEGLSELNLNGNKLCGH--VPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLNGSLP-SNIQNLK 254 (704)
Q Consensus 178 l~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~ 254 (704)
+..+++|++|++++|++++. .+..+..+++|+.|++++|.+++ .+..+..+++|+.|++++|.+.+..+ ..+..++
T Consensus 346 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 424 (606)
T 3vq2_A 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE 424 (606)
T ss_dssp CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCT
T ss_pred hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccc
Confidence 34566777777777777754 36777888888888888888874 55778888888888888888887766 6788888
Q ss_pred CCcEEEeecCccCCCCCCCcCCCCCcceeeccCceeec-cCCcccccccccceEEecccCCCCCCCCCcccccccCcccc
Q 005278 255 VLTNLDLSRNQLSGDIPTTIGGLENLETLSLADNQFQG-PVPKSFGSLISLESLDLSRNNLSGEIPKNFSAQSFLSNYAL 333 (704)
Q Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~l 333 (704)
+|+.|++++|++++..|..+..+++|+.|++++|++++ .+|..+..+++|+.|++++|++++..|..|...+.+....+
T Consensus 425 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 504 (606)
T 3vq2_A 425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM 504 (606)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEEC
Confidence 88888888888888788888888888888888888887 47888888888888888888888888877777777777766
Q ss_pred cCCCc
Q 005278 334 CGPAR 338 (704)
Q Consensus 334 ~g~~~ 338 (704)
.++..
T Consensus 505 s~N~l 509 (606)
T 3vq2_A 505 SHNNL 509 (606)
T ss_dssp CSSCC
T ss_pred CCCcC
Confidence 66643
No 245
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=7.9e-38 Score=334.83 Aligned_cols=266 Identities=21% Similarity=0.232 Sum_probs=181.1
Q ss_pred CCCc-cccccccCceEEEEEEEC---CCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCCCceEEeeeee--CCeEEEE
Q 005278 416 GFNE-CNLLGTGSFGSVYKGTLF---DGTNVAIKVFNLQLERASRSFDSECEILRSIRHRNLIKIISNCCN--IDFKALV 489 (704)
Q Consensus 416 ~~~~-~~~ig~G~~g~V~~~~~~---~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~--~~~~~lv 489 (704)
.|+. .++||+|+||+||+|+.. +++.||||++... .....+.+|+.++++++||||+++++++.. ....++|
T Consensus 21 ~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~lv 98 (405)
T 3rgf_A 21 LFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGT--GISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLL 98 (405)
T ss_dssp HEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSS--SCCHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEEE
T ss_pred hhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCC--CCCHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEEE
Confidence 4554 458999999999999965 5789999998643 234568899999999999999999999954 6788999
Q ss_pred EeccCCCCHHHHHhhC--------CCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeee----CCCCcEEEe
Q 005278 490 LEFMPNGSLEKWLYSH--------NYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILL----DENMTAHVS 557 (704)
Q Consensus 490 ~e~~~~gsL~~~l~~~--------~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~----~~~~~~kl~ 557 (704)
|||++ |+|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||++ +.++.+||+
T Consensus 99 ~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~kl~ 174 (405)
T 3rgf_A 99 FDYAE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLH---ANWVLHRDLKPANILVMGEGPERGRVKIA 174 (405)
T ss_dssp EECCS-EEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECCSSTTTTCEEEC
T ss_pred EeCCC-CCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHH---hCCEeCCCcCHHHeEEecCCCCCCcEEEE
Confidence 99996 5888887632 124899999999999999999995 4689999999999999 678899999
Q ss_pred eeccceecCCCCCc-ceeccccccccccCCcccCC-CCCCcccceeeHHHHHHHHhhCCCCCCcccccc--------ccH
Q 005278 558 DFGISKLLGEGDDS-VIQTMTIATIGYMAPEYGSE-GIISPKSDVYSYGILLMETFTRKKPTNEIFIGE--------MSL 627 (704)
Q Consensus 558 Dfgla~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~--------~~~ 627 (704)
|||+++........ .......||+.|+|||++.+ ..++.++|||||||++|||++|+.||.+..... ..+
T Consensus 175 Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~~~~~l 254 (405)
T 3rgf_A 175 DMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQL 254 (405)
T ss_dssp CTTCCC----------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCCC------CCCCHHHH
T ss_pred ECCCceecCCCCcccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCccccccccccchHHHH
Confidence 99999876532211 22334578999999998877 458999999999999999999999997532210 111
Q ss_pred HHHHHhhc-CCC--cchhccc--------cchhhh-hhh-------hhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 628 KHWVKESL-PDG--LTEVVDA--------NLVREE-QAF-------SVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 628 ~~~~~~~~-~~~--~~~~~~~--------~~~~~~-~~~-------~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
.......- +.. +...... .+.... ... ......+..+.+++.+||+.||++|||++|+++
T Consensus 255 ~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~L~~dP~~R~ta~e~L~ 333 (405)
T 3rgf_A 255 DRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQAMQ 333 (405)
T ss_dssp HHHHHHHCCCCTTTCGGGGGSTTHHHHHHHCCGGGGTTCCHHHHHHTTTCCTTSHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHHHHhhCCCChhhcchhhcCcchhhhhhhccccCCCcchhhhhHhhcCCCCCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence 11111110 000 1111000 000000 000 000011456789999999999999999999964
No 246
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=100.00 E-value=2.6e-37 Score=326.54 Aligned_cols=261 Identities=21% Similarity=0.256 Sum_probs=195.3
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccc--hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeE----
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL--ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFK---- 486 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~---- 486 (704)
.++|...+.||+|+||.||+|... +|+.||||++.... ....+.+.+|+.+++.++||||+++++++...+..
T Consensus 41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 120 (371)
T 4exu_A 41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 120 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCC
T ss_pred cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccce
Confidence 468889999999999999999864 68999999987543 23356788999999999999999999999876654
Q ss_pred --EEEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeecccee
Q 005278 487 --ALVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKL 564 (704)
Q Consensus 487 --~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~ 564 (704)
++||||+. |+|.+++.. .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.
T Consensus 121 ~~~lv~e~~~-~~l~~~~~~---~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~ 193 (371)
T 4exu_A 121 DFYLVMPFMQ-TDLQKIMGM---EFSEEKIQYLVYQMLKGLKYIH---SAGVVHRDLKPGNLAVNEDCELKILDFGLARH 193 (371)
T ss_dssp CCEEEEECCC-EEHHHHTTS---CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECSTTCC--
T ss_pred eEEEEEcccc-ccHHHHhhc---CCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCcCHHHeEECCCCCEEEEecCcccc
Confidence 99999997 688887743 3899999999999999999995 46899999999999999999999999999986
Q ss_pred cCCCCCcceeccccccccccCCcccCC-CCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCC--cch
Q 005278 565 LGEGDDSVIQTMTIATIGYMAPEYGSE-GIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDG--LTE 641 (704)
Q Consensus 565 ~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~--~~~ 641 (704)
.... .....||+.|+|||++.+ ..++.++|||||||++|||++|+.||.+....+ .+........... ...
T Consensus 194 ~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~-~~~~i~~~~~~~~~~~~~ 267 (371)
T 4exu_A 194 ADAE-----MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLD-QLTQILKVTGVPGTEFVQ 267 (371)
T ss_dssp -----------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCCCCHHHHT
T ss_pred cccC-----cCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCChHH-HHHHHHHHhCCCcHHHHH
Confidence 5332 234568999999998877 779999999999999999999999997632111 1111111110000 000
Q ss_pred hccccchh----------hhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 642 VVDANLVR----------EEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 642 ~~~~~~~~----------~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
........ ..........++..+.+++.+||+.||++|||+.|+++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 323 (371)
T 4exu_A 268 KLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALT 323 (371)
T ss_dssp TCSCHHHHHHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred HhhhhhhhhhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHhc
Confidence 00000000 00000111234677899999999999999999999964
No 247
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=100.00 E-value=2.3e-37 Score=322.36 Aligned_cols=252 Identities=19% Similarity=0.231 Sum_probs=172.8
Q ss_pred HhCCCCccc-cccccCceEEEEEEEC-CCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCCCceEEeeeee----CCeE
Q 005278 413 ATNGFNECN-LLGTGSFGSVYKGTLF-DGTNVAIKVFNLQLERASRSFDSECEILRSIRHRNLIKIISNCCN----IDFK 486 (704)
Q Consensus 413 ~~~~~~~~~-~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~----~~~~ 486 (704)
..++|.+.+ .||+|+||.||+|+.. +++.||||++.... ....+....++.++||||+++++++.. ....
T Consensus 26 ~~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~ 101 (336)
T 3fhr_A 26 VTDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSP----KARQEVDHHWQASGGPHIVCILDVYENMHHGKRCL 101 (336)
T ss_dssp GGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESSH----HHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred ccceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCcH----HHHHHHHHHHHhcCCCChHHHHHHHhhccCCCceE
Confidence 346788854 6999999999999965 69999999986431 222233344667799999999999876 4458
Q ss_pred EEEEeccCCCCHHHHHhhCC-CccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCC---CCcEEEeeeccc
Q 005278 487 ALVLEFMPNGSLEKWLYSHN-YFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDE---NMTAHVSDFGIS 562 (704)
Q Consensus 487 ~lv~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~---~~~~kl~Dfgla 562 (704)
++||||+++|+|.+++.... ..+++..++.++.|++.||+||| +.+|+||||||+||+++. ++.+||+|||++
T Consensus 102 ~lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH---~~~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~ 178 (336)
T 3fhr_A 102 LIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLH---SHNIAHRDVKPENLLYTSKEKDAVLKLTDFGFA 178 (336)
T ss_dssp EEEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCSSTTCCEEECCCTTC
T ss_pred EEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEEecCCCceEEEeccccc
Confidence 99999999999999998653 46899999999999999999995 468999999999999986 455999999999
Q ss_pred eecCCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchh
Q 005278 563 KLLGEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEV 642 (704)
Q Consensus 563 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (704)
+...... .....||+.|+|||++.+..++.++||||||+++|+|++|+.||........... ........
T Consensus 179 ~~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~--~~~~~~~~---- 248 (336)
T 3fhr_A 179 KETTQNA----LQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPG--MKRRIRLG---- 248 (336)
T ss_dssp EEC--------------------------CHHHHHHHHHHHHHHHHHHHHSSCCC-------------------------
T ss_pred eeccccc----cccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhhh--HHHhhhcc----
Confidence 8764322 2345689999999999888899999999999999999999999976432211000 00000000
Q ss_pred ccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 643 VDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
... ........++..+.+++..||+.||++|||+.|+++
T Consensus 249 ---~~~---~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 287 (336)
T 3fhr_A 249 ---QYG---FPNPEWSEVSEDAKQLIRLLLKTDPTERLTITQFMN 287 (336)
T ss_dssp -----C---CCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred ---ccc---cCchhhccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 000 000111234567889999999999999999999976
No 248
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=100.00 E-value=2.3e-37 Score=333.43 Aligned_cols=250 Identities=23% Similarity=0.296 Sum_probs=186.2
Q ss_pred CCCccccccccCceEEEEEEECCCCEEEEEEeeccchhhhHHHHHHHHHHHhc-CCCCCceEEeeeeeCCeEEEEEeccC
Q 005278 416 GFNECNLLGTGSFGSVYKGTLFDGTNVAIKVFNLQLERASRSFDSECEILRSI-RHRNLIKIISNCCNIDFKALVLEFMP 494 (704)
Q Consensus 416 ~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~~~ 494 (704)
.|...+.||+|+||+||.+...+|+.||||++... ..+.+.+|+++++++ +||||+++++++.+.+..++||||+.
T Consensus 16 ~~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~---~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~~ 92 (434)
T 2rio_A 16 LVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLID---FCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELCN 92 (434)
T ss_dssp CEEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGG---GHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCS
T ss_pred eeeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHH---HHHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecCC
Confidence 34456789999999998776678999999998653 235678899999987 89999999999999999999999995
Q ss_pred CCCHHHHHhhCCCc------cCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCC-------------CcEE
Q 005278 495 NGSLEKWLYSHNYF------LGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDEN-------------MTAH 555 (704)
Q Consensus 495 ~gsL~~~l~~~~~~------~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~-------------~~~k 555 (704)
|+|.+++...... .++..++.++.|++.||+||| +.+|+||||||+||+++.+ +.+|
T Consensus 93 -gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~k 168 (434)
T 2rio_A 93 -LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLH---SLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRIL 168 (434)
T ss_dssp -EEHHHHHHTC------------CCHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEECCHHHHSCCTTCCCSCEEE
T ss_pred -CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHH---HCCccccCCChHhEEEecCcccccccccCCCceEEE
Confidence 6999999855321 122345789999999999995 4689999999999999754 4899
Q ss_pred EeeeccceecCCCCCcc--eeccccccccccCCcccCC-------CCCCcccceeeHHHHHHHHhh-CCCCCCccccccc
Q 005278 556 VSDFGISKLLGEGDDSV--IQTMTIATIGYMAPEYGSE-------GIISPKSDVYSYGILLMETFT-RKKPTNEIFIGEM 625 (704)
Q Consensus 556 l~Dfgla~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~-------~~~~~~~Dv~s~Gv~l~el~t-g~~p~~~~~~~~~ 625 (704)
|+|||+++......... ......||++|+|||++.+ ..++.++|||||||++|||+| |+.||.......
T Consensus 169 L~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~- 247 (434)
T 2rio_A 169 ISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSRE- 247 (434)
T ss_dssp ECCCTTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTTHH-
T ss_pred EcccccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchhhH-
Confidence 99999999875433211 1234579999999998865 678999999999999999999 999997532211
Q ss_pred cHHHHHHhhcCCCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 626 SLKHWVKESLPDGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
..+........ . . .......++.++.+++.+||+.||++||++.||++
T Consensus 248 --~~i~~~~~~~~--~-----~-----~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~ 295 (434)
T 2rio_A 248 --SNIIRGIFSLD--E-----M-----KCLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLR 295 (434)
T ss_dssp --HHHHHTCCCCC--C-----C-----TTCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred --HHHhcCCCCcc--c-----c-----cccccccchHHHHHHHHHHhhCChhhCCCHHHHHh
Confidence 12222111100 0 0 01112345678899999999999999999999975
No 249
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=8.4e-36 Score=348.47 Aligned_cols=315 Identities=23% Similarity=0.201 Sum_probs=199.0
Q ss_pred CCCCCCCEEecCCCcCcccCCccccCCCCCCEEeccCccccccCchh--hcCCCCCCEEecccccCCCcccchhhccccc
Q 005278 3 YMLPNLKYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFSGLIPNT--FGNLGSLQVLSLAYNYLMTESSAAKWNFLSS 80 (704)
Q Consensus 3 ~~l~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~--~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~ 80 (704)
..+++|++|+|++|.+++..|+.|.++++|++|+|++|.+++..+.. |.++++|++|+|++|.++.... +..
T Consensus 70 ~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~------~~~ 143 (844)
T 3j0a_A 70 RNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL------HPS 143 (844)
T ss_dssp SSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC------CGG
T ss_pred cCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccccc------chh
Confidence 45666777777777777666777777777777777777776544443 6667777777777776665432 123
Q ss_pred CCCCCCCcEEEccCCCCcccCChhhhhc----------------------------------------------------
Q 005278 81 LTNCRNLTVLGLASNPLRGILPPLIGNF---------------------------------------------------- 108 (704)
Q Consensus 81 ~~~l~~L~~L~L~~n~i~~~~~~~~~~~---------------------------------------------------- 108 (704)
|.++++|++|+|++|.+.+..+..+..+
T Consensus 144 ~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 223 (844)
T 3j0a_A 144 FGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGN 223 (844)
T ss_dssp GGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSG
T ss_pred HhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHH
Confidence 6677777777777777665555444332
Q ss_pred -----------------------------------------ccccceEEecCCcccccCChhhhcCCCCCEEEccCCcCc
Q 005278 109 -----------------------------------------SASLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLN 147 (704)
Q Consensus 109 -----------------------------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 147 (704)
..+|++|++++|.+.+..+..+..+++|++|+|++|.+.
T Consensus 224 ~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~ 303 (844)
T 3j0a_A 224 FSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN 303 (844)
T ss_dssp GGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCC
T ss_pred HHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCC
Confidence 023445555555555555556666677777777777777
Q ss_pred cccChhhcCCCCcCeeeccCcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCC----
Q 005278 148 GTIPTAVGRLRRLQGLYLHGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMP---- 223 (704)
Q Consensus 148 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---- 223 (704)
+..+..|.++++|++|+|++|++++..|..+..+++|++|++++|.+++..+..|..+++|+.|++++|.+++...
T Consensus 304 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L 383 (844)
T 3j0a_A 304 KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSI 383 (844)
T ss_dssp EECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSC
T ss_pred CCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCc
Confidence 6666677777777777777777776666777777777777777777776556667777777777777776653210
Q ss_pred --------------C----------------------cccCCccccEEEecCcccCCCC---------------------
Q 005278 224 --------------S----------------------SFGSLEYVLYINLSANSLNGSL--------------------- 246 (704)
Q Consensus 224 --------------~----------------------~~~~l~~L~~L~l~~N~l~~~~--------------------- 246 (704)
. .+..+++|+.|++++|.+++..
T Consensus 384 ~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l 463 (844)
T 3j0a_A 384 PDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENML 463 (844)
T ss_dssp SEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCC
T ss_pred chhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCcc
Confidence 0 0124555666666666555322
Q ss_pred ---------CcccccCcCCcEEEeecCccCCCCCCCcCCCCCcceeeccCceeeccCCcccccccccceEEecccCCCCC
Q 005278 247 ---------PSNIQNLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSLADNQFQGPVPKSFGSLISLESLDLSRNNLSGE 317 (704)
Q Consensus 247 ---------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 317 (704)
+..|.++++|+.|+|++|++++..|..|.++++|+.|+|++|++++..|..+. ++|+.|++++|++++.
T Consensus 464 ~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~ 541 (844)
T 3j0a_A 464 QLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAP 541 (844)
T ss_dssp SSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCC
T ss_pred ccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCC
Confidence 22345556666666666666666666666777777777777777655555544 6677777777777777
Q ss_pred CCCCcccc
Q 005278 318 IPKNFSAQ 325 (704)
Q Consensus 318 ~p~~~~~~ 325 (704)
.|..|..+
T Consensus 542 ~~~~~~~L 549 (844)
T 3j0a_A 542 NPDVFVSL 549 (844)
T ss_dssp CSCCCSSC
T ss_pred ChhHhCCc
Confidence 76655433
No 250
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=100.00 E-value=1.4e-37 Score=323.33 Aligned_cols=253 Identities=23% Similarity=0.271 Sum_probs=177.3
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccc-hhhhHHHHHHHH-HHHhcCCCCCceEEeeeeeCCeEEEEE
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL-ERASRSFDSECE-ILRSIRHRNLIKIISNCCNIDFKALVL 490 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~-~l~~l~h~niv~l~~~~~~~~~~~lv~ 490 (704)
.++|...+.||+|+||.||+|... +|+.||||++.... ......+..|+. +++.++||||+++++++...+..++||
T Consensus 21 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv~ 100 (327)
T 3aln_A 21 AEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICM 100 (327)
T ss_dssp SCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEEE
Confidence 368888999999999999999974 78999999997643 233345555555 677789999999999999999999999
Q ss_pred eccCCCCHHHHHhh----CCCccCHHHHHHHHHHHHHHHHHHHhcCCC-CcEecCCCCCCeeeCCCCcEEEeeeccceec
Q 005278 491 EFMPNGSLEKWLYS----HNYFLGILERLNIMIDVGLALEYLHHGHST-PMVHCDLKPNNILLDENMTAHVSDFGISKLL 565 (704)
Q Consensus 491 e~~~~gsL~~~l~~----~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~-~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~ 565 (704)
||+++ +|.+++.. ....+++..+..++.|++.|++|||+ . +|+||||||+||+++.++.+||+|||+++..
T Consensus 101 e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~---~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~ 176 (327)
T 3aln_A 101 ELMST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKE---NLKIIHRDIKPSNILLDRSGNIKLCDFGISGQL 176 (327)
T ss_dssp CCCSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHH---HHSCCCSCCCGGGEEEETTTEEEECCCSSSCC-
T ss_pred eecCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhc---cCCEeECCCCHHHEEEcCCCCEEEccCCCceec
Confidence 99985 88887763 24568999999999999999999965 5 8999999999999999999999999999876
Q ss_pred CCCCCcceeccccccccccCCccc----CCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcch
Q 005278 566 GEGDDSVIQTMTIATIGYMAPEYG----SEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTE 641 (704)
Q Consensus 566 ~~~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (704)
.... ......||+.|+|||++ .+..++.++||||||+++|||++|+.||....... ..........
T Consensus 177 ~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~----~~~~~~~~~~--- 246 (327)
T 3aln_A 177 VDSI---AKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVF----DQLTQVVKGD--- 246 (327)
T ss_dssp --------------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC-----------CCCCCSC---
T ss_pred cccc---ccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchHH----HHHHHHhcCC---
Confidence 4322 22334689999999998 46678999999999999999999999997532110 0000000000
Q ss_pred hccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 642 VVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
.+.+.. .....++..+.+++..||+.||++||++.|+++
T Consensus 247 --~~~~~~-----~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 285 (327)
T 3aln_A 247 --PPQLSN-----SEEREFSPSFINFVNLCLTKDESKRPKYKELLK 285 (327)
T ss_dssp --CCCCCC-----CSSCCCCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred --CCCCCC-----cccccCCHHHHHHHHHHhhCChhhCcCHHHHHh
Confidence 000000 011134567889999999999999999999976
No 251
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=100.00 E-value=1.7e-37 Score=321.44 Aligned_cols=252 Identities=22% Similarity=0.255 Sum_probs=181.4
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccch--hhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEE
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQLE--RASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVL 490 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 490 (704)
.++|+..+.||+|+||.||+|+.. +|+.||||++..... ...+.+.++..+++.++||||+++++++...+..++||
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~ 103 (318)
T 2dyl_A 24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAM 103 (318)
T ss_dssp GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred hccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEEE
Confidence 457888999999999999999975 799999999975432 22334555666788889999999999999999999999
Q ss_pred eccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCCC
Q 005278 491 EFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGDD 570 (704)
Q Consensus 491 e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~~ 570 (704)
||+ ++.+..+.......+++..+..++.|++.||+|||.. .+|+||||||+||+++.++.+||+|||++.......
T Consensus 104 e~~-~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~--~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~- 179 (318)
T 2dyl_A 104 ELM-GTCAEKLKKRMQGPIPERILGKMTVAIVKALYYLKEK--HGVIHRDVKPSNILLDERGQIKLCDFGISGRLVDDK- 179 (318)
T ss_dssp CCC-SEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHH--HCCCCCCCCGGGEEECTTSCEEECCCTTC--------
T ss_pred ecc-CCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhh--CCEEeCCCCHHHEEECCCCCEEEEECCCchhccCCc-
Confidence 999 5566666555456689999999999999999999642 289999999999999999999999999997664322
Q ss_pred cceeccccccccccCCcccC-----CCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccc
Q 005278 571 SVIQTMTIATIGYMAPEYGS-----EGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDA 645 (704)
Q Consensus 571 ~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (704)
......||+.|+|||++. ...++.++||||||+++|||++|+.||.........+....... +..
T Consensus 180 --~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~-~~~------- 249 (318)
T 2dyl_A 180 --AKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKTDFEVLTKVLQEE-PPL------- 249 (318)
T ss_dssp ---------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHHSC-CCC-------
T ss_pred --cccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCCccHHHHHHHhccC-CCC-------
Confidence 123446899999999984 55688999999999999999999999976322211111111110 000
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 646 NLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
.+....++..+.+++.+||+.||++||++.|+++
T Consensus 250 --------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 283 (318)
T 2dyl_A 250 --------LPGHMGFSGDFQSFVKDCLTKDHRKRPKYNKLLE 283 (318)
T ss_dssp --------CCSSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred --------CCccCCCCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence 0011123456889999999999999999999976
No 252
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=100.00 E-value=9.9e-37 Score=320.86 Aligned_cols=262 Identities=21% Similarity=0.246 Sum_probs=198.9
Q ss_pred hCCCCccccccccCceEEEEEEEC-CC-CEEEEEEeeccchhhhHHHHHHHHHHHhcCCCC------CceEEeeeeeCCe
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DG-TNVAIKVFNLQLERASRSFDSECEILRSIRHRN------LIKIISNCCNIDF 485 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~-~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n------iv~l~~~~~~~~~ 485 (704)
.++|++.+.||+|+||+||+|... ++ +.||+|+++.. ....+.+.+|+.++++++|++ ++.+.+++...+.
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 96 (355)
T 2eu9_A 18 QERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNV-GKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGH 96 (355)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTE
T ss_pred cccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEccc-ccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCe
Confidence 468999999999999999999864 34 68999998643 334567889999999997665 9999999999999
Q ss_pred EEEEEeccCCCCHHHHHhhCC-CccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeee----------------
Q 005278 486 KALVLEFMPNGSLEKWLYSHN-YFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILL---------------- 548 (704)
Q Consensus 486 ~~lv~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~---------------- 548 (704)
.++||||+ ++++.+++.... ..+++..+..++.|++.||+||| +.+|+||||||+||++
T Consensus 97 ~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH---~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~~~ 172 (355)
T 2eu9_A 97 MCIAFELL-GKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLH---ENQLTHTDLKPENILFVNSEFETLYNEHKSCE 172 (355)
T ss_dssp EEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEESCCCEEEEECCC-CCC
T ss_pred EEEEEecc-CCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEeccccccccccccccc
Confidence 99999999 667777776543 56899999999999999999995 5789999999999999
Q ss_pred ---CCCCcEEEeeeccceecCCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccc
Q 005278 549 ---DENMTAHVSDFGISKLLGEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEM 625 (704)
Q Consensus 549 ---~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~ 625 (704)
+.++.+||+|||+++..... .....||+.|+|||++.+..++.++|||||||++|||++|+.||......+
T Consensus 173 ~~~~~~~~~kl~Dfg~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~- 246 (355)
T 2eu9_A 173 EKSVKNTSIRVADFGSATFDHEH-----HTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHENRE- 246 (355)
T ss_dssp EEEESCCCEEECCCTTCEETTSC-----CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-
T ss_pred ccccCCCcEEEeecCcccccccc-----ccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHH-
Confidence 56789999999999875432 233568999999999999999999999999999999999999997632211
Q ss_pred cHHHHHHhhcCCCcchh----------------ccccc----------hhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCC
Q 005278 626 SLKHWVKESLPDGLTEV----------------VDANL----------VREEQAFSVKIDCLLSIMHLALDCCMESPEQR 679 (704)
Q Consensus 626 ~~~~~~~~~~~~~~~~~----------------~~~~~----------~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~R 679 (704)
....+........... .+... .............+..+.+++.+||+.||++|
T Consensus 247 -~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R 325 (355)
T 2eu9_A 247 -HLVMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQR 325 (355)
T ss_dssp -HHHHHHHHHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTS
T ss_pred -HHHHHHHHcCCCcHHHhhhccchhhhcccccccccccchhccccccCCcccccccccchhHHHHHHHHHHHhcCChhhC
Confidence 1111111100000000 00000 00000011122345688999999999999999
Q ss_pred CCHHHHHH
Q 005278 680 VSMKDAAA 687 (704)
Q Consensus 680 pt~~ev~~ 687 (704)
||+.|+++
T Consensus 326 pt~~e~l~ 333 (355)
T 2eu9_A 326 ITLAEALL 333 (355)
T ss_dssp CCHHHHTT
T ss_pred cCHHHHhc
Confidence 99999963
No 253
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=100.00 E-value=8.3e-38 Score=323.59 Aligned_cols=241 Identities=23% Similarity=0.261 Sum_probs=197.8
Q ss_pred HhCCCCccccccccCceEEEEEEE-CCCCEEEEEEeeccchh------hhHHHHHHHHHHHhcC--CCCCceEEeeeeeC
Q 005278 413 ATNGFNECNLLGTGSFGSVYKGTL-FDGTNVAIKVFNLQLER------ASRSFDSECEILRSIR--HRNLIKIISNCCNI 483 (704)
Q Consensus 413 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~------~~~~~~~e~~~l~~l~--h~niv~l~~~~~~~ 483 (704)
..++|...+.||+|+||.||+|+. .+++.||||++...... ....+.+|+.++++++ |+||+++++++...
T Consensus 41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~ 120 (320)
T 3a99_A 41 LESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERP 120 (320)
T ss_dssp CTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECS
T ss_pred ccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEecC
Confidence 457899999999999999999985 47899999998754321 2345778999999996 59999999999999
Q ss_pred CeEEEEEeccCC-CCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeC-CCCcEEEeeecc
Q 005278 484 DFKALVLEFMPN-GSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLD-ENMTAHVSDFGI 561 (704)
Q Consensus 484 ~~~~lv~e~~~~-gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~-~~~~~kl~Dfgl 561 (704)
+..++|+||+.+ ++|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++ .++.+||+|||+
T Consensus 121 ~~~~lv~e~~~~~~~L~~~l~~~~-~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~~kL~Dfg~ 196 (320)
T 3a99_A 121 DSFVLILERPEPVQDLFDFITERG-ALQEELARSFFWQVLEAVRHCH---NCGVLHRDIKDENILIDLNRGELKLIDFGS 196 (320)
T ss_dssp SEEEEEEECCSSEEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTTEEEECCCTT
T ss_pred CcEEEEEEcCCCCccHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHH---HCCcEeCCCCHHHEEEeCCCCCEEEeeCcc
Confidence 999999999976 89999998643 4889999999999999999995 57899999999999999 789999999999
Q ss_pred ceecCCCCCcceeccccccccccCCcccCCCCC-CcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcc
Q 005278 562 SKLLGEGDDSVIQTMTIATIGYMAPEYGSEGII-SPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLT 640 (704)
Q Consensus 562 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 640 (704)
++...... .....||+.|+|||++.+..+ +.++||||||+++|||++|+.||.... .......
T Consensus 197 ~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~-------~~~~~~~----- 260 (320)
T 3a99_A 197 GALLKDTV----YTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDE-------EIIRGQV----- 260 (320)
T ss_dssp CEECCSSC----BCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH-------HHHHCCC-----
T ss_pred cccccccc----ccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChh-------hhhcccc-----
Confidence 98765322 233468999999998876665 678999999999999999999996521 1111000
Q ss_pred hhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 641 EVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
..+..++.++.+++.+||+.||++||++.|+++
T Consensus 261 --------------~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 293 (320)
T 3a99_A 261 --------------FFRQRVSSECQHLIRWCLALRPSDRPTFEEIQN 293 (320)
T ss_dssp --------------CCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred --------------cccccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 001123456889999999999999999999965
No 254
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.1e-37 Score=332.52 Aligned_cols=249 Identities=24% Similarity=0.323 Sum_probs=186.9
Q ss_pred CCCCccccccccCceEEEEEEECCCCEEEEEEeeccchhhhHHHHHHHHHHHhc-CCCCCceEEeeeeeCCeEEEEEecc
Q 005278 415 NGFNECNLLGTGSFGSVYKGTLFDGTNVAIKVFNLQLERASRSFDSECEILRSI-RHRNLIKIISNCCNIDFKALVLEFM 493 (704)
Q Consensus 415 ~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~~ 493 (704)
.+|...+.||+|+||+||.....+++.||||++.... ...+.+|+++++++ +||||+++++++.+....++||||+
T Consensus 24 ~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~---~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E~~ 100 (432)
T 3p23_A 24 ISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPEC---FSFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIELC 100 (432)
T ss_dssp EEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTT---EEECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred EEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHH---HHHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEECC
Confidence 4688889999999999765556789999999986432 23356899999999 7999999999999999999999999
Q ss_pred CCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCC-----CCcEEEeeeccceecCCC
Q 005278 494 PNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDE-----NMTAHVSDFGISKLLGEG 568 (704)
Q Consensus 494 ~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~-----~~~~kl~Dfgla~~~~~~ 568 (704)
+ |+|.+++........+..+..++.|++.||+||| +.+|+||||||+||+++. ...+||+|||+++.....
T Consensus 101 ~-g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~~~ 176 (432)
T 3p23_A 101 A-ATLQEYVEQKDFAHLGLEPITLLQQTTSGLAHLH---SLNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVG 176 (432)
T ss_dssp S-EEHHHHHHSSSCCCCSSCHHHHHHHHHHHHHHHH---HTTCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC---
T ss_pred C-CCHHHHHHhcCCCccchhHHHHHHHHHHHHHHHH---HCcCEeCCCCHHHEEEecCCCCCceeEEEecccceeeccCC
Confidence 6 6999999876655566667889999999999995 468999999999999953 336889999999877543
Q ss_pred CCc-ceeccccccccccCCcccC---CCCCCcccceeeHHHHHHHHhh-CCCCCCccccccccHHHHHHhhcCCCcchhc
Q 005278 569 DDS-VIQTMTIATIGYMAPEYGS---EGIISPKSDVYSYGILLMETFT-RKKPTNEIFIGEMSLKHWVKESLPDGLTEVV 643 (704)
Q Consensus 569 ~~~-~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~s~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (704)
... .......||+.|+|||++. ...++.++|||||||++|||+| |..||...... ...... .......
T Consensus 177 ~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~---~~~~~~---~~~~~~~- 249 (432)
T 3p23_A 177 RHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQR---QANILL---GACSLDC- 249 (432)
T ss_dssp ---------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTH---HHHHHT---TCCCCTT-
T ss_pred CcceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHH---HHHHHh---ccCCccc-
Confidence 221 2233457999999999987 4567889999999999999999 89998652211 111110 0000000
Q ss_pred cccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 644 DANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
..........+.+++.+||+.||++||++.||++
T Consensus 250 ----------~~~~~~~~~~~~~li~~~L~~dP~~Rps~~evl~ 283 (432)
T 3p23_A 250 ----------LHPEKHEDVIARELIEKMIAMDPQKRPSAKHVLK 283 (432)
T ss_dssp ----------SCTTCHHHHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred ----------cCccccccHHHHHHHHHHHhCCHhhCCCHHHHHh
Confidence 0011233456788999999999999999999984
No 255
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.1e-36 Score=336.44 Aligned_cols=136 Identities=22% Similarity=0.301 Sum_probs=88.1
Q ss_pred CCCCCCCEEecCCCcCcccCCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccCC
Q 005278 3 YMLPNLKYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLT 82 (704)
Q Consensus 3 ~~l~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~ 82 (704)
..+++|++|+|++|.++++.+..|.++++|++|+|++|.++++.+.+|.++++|++|++++|.++.++... +.
T Consensus 49 ~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~-------~~ 121 (570)
T 2z63_A 49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP-------IG 121 (570)
T ss_dssp TTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCS-------CT
T ss_pred hCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCcc-------cc
Confidence 45667777777777777666666777777777777777777666667777777777777777766654332 66
Q ss_pred CCCCCcEEEccCCCCccc-CChhhhhcccccceEEecCCcccccCChhhhcCCCC----CEEEccCCcC
Q 005278 83 NCRNLTVLGLASNPLRGI-LPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGM----IVFDLNGCDL 146 (704)
Q Consensus 83 ~l~~L~~L~L~~n~i~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L----~~L~L~~n~l 146 (704)
++++|++|+|++|.+.+. .|..+..+. +|++|++++|++++..+..++.+.+| +.|++++|.+
T Consensus 122 ~l~~L~~L~L~~n~l~~~~lp~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l 189 (570)
T 2z63_A 122 HLKTLKELNVAHNLIQSFKLPEYFSNLT-NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189 (570)
T ss_dssp TCTTCCEEECCSSCCCCCCCCGGGGGCT-TCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCC
T ss_pred ccccccEEecCCCccceecChhhhcccC-CCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCc
Confidence 777777777777777653 466666653 57777777776665555555544444 4444444443
No 256
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.4e-37 Score=321.02 Aligned_cols=244 Identities=25% Similarity=0.293 Sum_probs=190.1
Q ss_pred HHHHhCCCCccccccccCceEEEEEEE-CCCCEEEEEEeeccch------hhhHHHHHHHHHHHhc----CCCCCceEEe
Q 005278 410 IQRATNGFNECNLLGTGSFGSVYKGTL-FDGTNVAIKVFNLQLE------RASRSFDSECEILRSI----RHRNLIKIIS 478 (704)
Q Consensus 410 ~~~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~------~~~~~~~~e~~~l~~l----~h~niv~l~~ 478 (704)
.....++|...+.||+|+||.||+|+. .+++.||||++..... .....+.+|+.+++++ +||||+++++
T Consensus 26 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~ 105 (312)
T 2iwi_A 26 REAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLD 105 (312)
T ss_dssp -------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEE
T ss_pred hhhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEE
Confidence 344567899999999999999999985 4689999999865432 1223466799999999 8999999999
Q ss_pred eeeeCCeEEEEEec-cCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeC-CCCcEEE
Q 005278 479 NCCNIDFKALVLEF-MPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLD-ENMTAHV 556 (704)
Q Consensus 479 ~~~~~~~~~lv~e~-~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~-~~~~~kl 556 (704)
++...+..++|+|| +.+++|.+++.... .+++..++.++.|++.||+|||. .+|+||||||+||+++ .++.+||
T Consensus 106 ~~~~~~~~~~v~e~~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~~kl 181 (312)
T 2iwi_A 106 WFETQEGFMLVLERPLPAQDLFDYITEKG-PLGEGPSRCFFGQVVAAIQHCHS---RGVVHRDIKDENILIDLRRGCAKL 181 (312)
T ss_dssp EC-----CEEEEECCSSEEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHHH---HTEECCCCSGGGEEEETTTTEEEE
T ss_pred EEecCCeEEEEEEecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCChhhEEEeCCCCeEEE
Confidence 99999999999999 78999999998654 48999999999999999999964 6899999999999999 8899999
Q ss_pred eeeccceecCCCCCcceeccccccccccCCcccCCCCCC-cccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhc
Q 005278 557 SDFGISKLLGEGDDSVIQTMTIATIGYMAPEYGSEGIIS-PKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESL 635 (704)
Q Consensus 557 ~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~-~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~ 635 (704)
+|||++....... .....|++.|+|||++.+..+. .++||||||+++|||++|+.||.... ......
T Consensus 182 ~dfg~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~-------~~~~~~- 249 (312)
T 2iwi_A 182 IDFGSGALLHDEP----YTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQ-------EILEAE- 249 (312)
T ss_dssp CCCSSCEECCSSC----BCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH-------HHHHTC-
T ss_pred EEcchhhhcccCc----ccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCChH-------HHhhhc-
Confidence 9999998775432 2345689999999988766654 58999999999999999999997521 111100
Q ss_pred CCCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 636 PDGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
...+..++..+.+++.+||+.||++||++.|+++
T Consensus 250 ------------------~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~ 283 (312)
T 2iwi_A 250 ------------------LHFPAHVSPDCCALIRRCLAPKPSSRPSLEEILL 283 (312)
T ss_dssp ------------------CCCCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred ------------------cCCcccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 0011133456889999999999999999999976
No 257
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=100.00 E-value=3.2e-37 Score=326.98 Aligned_cols=264 Identities=18% Similarity=0.245 Sum_probs=198.6
Q ss_pred hCCCCccccccccCceEEEEEEE-CCCCEEEEEEeeccchhhhHHHHHHHHHHHhcC-----------CCCCceEEeeee
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTL-FDGTNVAIKVFNLQLERASRSFDSECEILRSIR-----------HRNLIKIISNCC 481 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-----------h~niv~l~~~~~ 481 (704)
.++|...+.||+|+||+||+|+. .+++.||||++... ....+.+.+|+.++++++ ||||+++++++.
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~ 96 (373)
T 1q8y_A 18 DARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD-KVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFN 96 (373)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEE
T ss_pred CCeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCC-ccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhh
Confidence 35899999999999999999986 47899999998743 234567889999999886 899999999987
Q ss_pred eCC----eEEEEEeccCCCCHHHHHhhC-CCccCHHHHHHHHHHHHHHHHHHHhcCCC-CcEecCCCCCCeeeC------
Q 005278 482 NID----FKALVLEFMPNGSLEKWLYSH-NYFLGILERLNIMIDVGLALEYLHHGHST-PMVHCDLKPNNILLD------ 549 (704)
Q Consensus 482 ~~~----~~~lv~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~-~ivH~dlk~~Nil~~------ 549 (704)
..+ ..++||||+ +++|.+++... ...+++..+..++.|++.||+|||+ . +|+||||||+||+++
T Consensus 97 ~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~---~~~ivH~Dikp~NIll~~~~~~~ 172 (373)
T 1q8y_A 97 HKGPNGVHVVMVFEVL-GENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHR---RCGIIHTDIKPENVLMEIVDSPE 172 (373)
T ss_dssp EEETTEEEEEEEECCC-CEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHH---TTCEECSCCSGGGEEEEEEETTT
T ss_pred ccCCCCceEEEEEecC-CCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHh---cCCEEecCCChHHeEEeccCCCc
Confidence 654 789999999 88999999864 3458999999999999999999964 5 899999999999994
Q ss_pred CCCcEEEeeeccceecCCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCcccccc-----
Q 005278 550 ENMTAHVSDFGISKLLGEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGE----- 624 (704)
Q Consensus 550 ~~~~~kl~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~----- 624 (704)
..+.+||+|||++...... .....||+.|+|||++.+..++.++|||||||++|||+||+.||.......
T Consensus 173 ~~~~~kl~Dfg~a~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~ 247 (373)
T 1q8y_A 173 NLIQIKIADLGNACWYDEH-----YTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDD 247 (373)
T ss_dssp TEEEEEECCCTTCEETTBC-----CCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHH
T ss_pred CcceEEEcccccccccCCC-----CCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCcccccCChH
Confidence 4458999999999876432 233468999999999999999999999999999999999999997643211
Q ss_pred ccHHHHHHhhc--CC----------------C-cchhccccc----hhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCC
Q 005278 625 MSLKHWVKESL--PD----------------G-LTEVVDANL----VREEQAFSVKIDCLLSIMHLALDCCMESPEQRVS 681 (704)
Q Consensus 625 ~~~~~~~~~~~--~~----------------~-~~~~~~~~~----~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt 681 (704)
..+........ +. . +..+..... .........+..++..+.+++.+||+.||++|||
T Consensus 248 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt 327 (373)
T 1q8y_A 248 DHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRAD 327 (373)
T ss_dssp HHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBC
T ss_pred HHHHHHHHhcCCCCHHHHhccchhhhhcCCcchhcccccccccchhhhhhhcccCCcchHHHHHHHHHHHhccCccccCC
Confidence 01111111000 00 0 000000000 0001112234567888999999999999999999
Q ss_pred HHHHHH
Q 005278 682 MKDAAA 687 (704)
Q Consensus 682 ~~ev~~ 687 (704)
++|+++
T Consensus 328 ~~ell~ 333 (373)
T 1q8y_A 328 AGGLVN 333 (373)
T ss_dssp HHHHHT
T ss_pred HHHHhh
Confidence 999965
No 258
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=8.8e-36 Score=330.37 Aligned_cols=314 Identities=21% Similarity=0.235 Sum_probs=207.3
Q ss_pred CCCCEEecCCCcCcccCCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccCCCCC
Q 005278 6 PNLKYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTNCR 85 (704)
Q Consensus 6 ~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~l~ 85 (704)
++|++|+|++|.+++..|..|.++++|++|+|++|.++++.|.+|.++++|++|+|++|+++.++ .. .++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp--------~~--~l~ 90 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKIS--------CH--PTV 90 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEE--------CC--CCC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecC--------cc--ccC
Confidence 68899999999998777788999999999999999999888889999999999999999887643 22 788
Q ss_pred CCcEEEccCCCCcc-cCChhhhhcccccceEEecCCcccccCChhhhcCCCC--CEEEccCCcC--ccccChhhcCCC--
Q 005278 86 NLTVLGLASNPLRG-ILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGM--IVFDLNGCDL--NGTIPTAVGRLR-- 158 (704)
Q Consensus 86 ~L~~L~L~~n~i~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L--~~L~L~~n~l--~~~~~~~~~~l~-- 158 (704)
+|++|+|++|++.+ ..|..+..+. +|++|++++|.+.+ ..+..+++| ++|++++|.+ .+..|..+..+.
T Consensus 91 ~L~~L~L~~N~l~~~~~p~~~~~l~-~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~ 166 (520)
T 2z7x_B 91 NLKHLDLSFNAFDALPICKEFGNMS-QLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTE 166 (520)
T ss_dssp CCSEEECCSSCCSSCCCCGGGGGCT-TCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEE
T ss_pred CccEEeccCCccccccchhhhccCC-cceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccc
Confidence 89999999999887 3677888774 78889988888875 356666677 8888888877 555555554422
Q ss_pred --------------------------------------------------------------------------------
Q 005278 159 -------------------------------------------------------------------------------- 158 (704)
Q Consensus 159 -------------------------------------------------------------------------------- 158 (704)
T Consensus 167 ~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~ 246 (520)
T 2z7x_B 167 SLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWH 246 (520)
T ss_dssp EEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHT
T ss_pred eEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhh
Confidence
Q ss_pred -CcCeeeccCcccCCCCCccc-----cCCCCCCEEEcCCCcC--------------------------CccCCccccCcC
Q 005278 159 -RLQGLYLHGNKLQGSIPYDL-----CHLEGLSELNLNGNKL--------------------------CGHVPPCLASLT 206 (704)
Q Consensus 159 -~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~L~~n~l--------------------------~~~~~~~~~~l~ 206 (704)
+|++|++++|++++.+|..+ ..+++|+.+++++|.+ .... .+..++
T Consensus 247 ~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~ 324 (520)
T 2z7x_B 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKIS 324 (520)
T ss_dssp SSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCC
T ss_pred CcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc--chhhCC
Confidence 57777777777776667666 4444333333333333 1100 014556
Q ss_pred CCCEEEecCccCCCCCCCcccCCccccEEEecCcccCC--CCCcccccCcCCcEEEeecCccCCCCCC-CcCCCCCccee
Q 005278 207 SLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLNG--SLPSNIQNLKVLTNLDLSRNQLSGDIPT-TIGGLENLETL 283 (704)
Q Consensus 207 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L 283 (704)
+|+.|++++|.+++..|..+..+++|++|++++|.+++ .+|..+..+++|+.|++++|++++.+|. .+..+++|+.|
T Consensus 325 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L 404 (520)
T 2z7x_B 325 PFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSL 404 (520)
T ss_dssp CCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEE
T ss_pred cccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEE
Confidence 66666666666665566666666666666666666654 3344556666666666666666653443 35555666666
Q ss_pred eccCceeeccCCcccccccccceEEecccCCCCCCCCCcccccccCcccccCCCc
Q 005278 284 SLADNQFQGPVPKSFGSLISLESLDLSRNNLSGEIPKNFSAQSFLSNYALCGPAR 338 (704)
Q Consensus 284 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~l~g~~~ 338 (704)
++++|++++..|..+. ++|+.|++++|+++ .+|..+...+.+....+.++..
T Consensus 405 ~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l 456 (520)
T 2z7x_B 405 NMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQL 456 (520)
T ss_dssp ECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCC
T ss_pred ECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcC
Confidence 6666666555554443 45566666666655 4444443444444445544443
No 259
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.9e-35 Score=330.48 Aligned_cols=315 Identities=22% Similarity=0.222 Sum_probs=238.5
Q ss_pred CCCCCEEecCCCcCcccCCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccCCCC
Q 005278 5 LPNLKYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTNC 84 (704)
Q Consensus 5 l~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~l 84 (704)
.++++.|+|++|.+++..+..|.++++|++|+|++|.++++.|++|.++++|++|+|++|.++.++. . .+
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~--------~--~l 120 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISC--------C--PM 120 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECS--------C--CC
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCc--------c--cc
Confidence 4689999999999997777889999999999999999998889999999999999999999886442 2 78
Q ss_pred CCCcEEEccCCCCccc-CChhhhhcccccceEEecCCcccccCChhhhcCCCC--CEEEccCCcC--ccccChhhcCCC-
Q 005278 85 RNLTVLGLASNPLRGI-LPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGM--IVFDLNGCDL--NGTIPTAVGRLR- 158 (704)
Q Consensus 85 ~~L~~L~L~~n~i~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L--~~L~L~~n~l--~~~~~~~~~~l~- 158 (704)
++|++|+|++|++.+. .|..|..+. +|++|++++|.+.+. .+..+++| ++|++++|.+ .+..|..+..+.
T Consensus 121 ~~L~~L~Ls~N~l~~l~~p~~~~~l~-~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~ 196 (562)
T 3a79_B 121 ASLRHLDLSFNDFDVLPVCKEFGNLT-KLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNT 196 (562)
T ss_dssp TTCSEEECCSSCCSBCCCCGGGGGCT-TCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCE
T ss_pred ccCCEEECCCCCccccCchHhhcccC-cccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCc
Confidence 8999999999999874 357788774 799999999988764 34455555 8888888888 555565555433
Q ss_pred --------------------------------------------------------------------------------
Q 005278 159 -------------------------------------------------------------------------------- 158 (704)
Q Consensus 159 -------------------------------------------------------------------------------- 158 (704)
T Consensus 197 ~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~ 276 (562)
T 3a79_B 197 TVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPR 276 (562)
T ss_dssp EEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTS
T ss_pred ceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcc
Confidence
Q ss_pred CcCeeeccCcccCCCCCccc-----------------------------------------------------cCCCCCC
Q 005278 159 RLQGLYLHGNKLQGSIPYDL-----------------------------------------------------CHLEGLS 185 (704)
Q Consensus 159 ~L~~L~L~~n~l~~~~~~~l-----------------------------------------------------~~l~~L~ 185 (704)
+|++|++++|.+++.+|..+ ..+++|+
T Consensus 277 ~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~ 356 (562)
T 3a79_B 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFT 356 (562)
T ss_dssp SEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCC
T ss_pred cccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCce
Confidence 67778888888877777655 5567777
Q ss_pred EEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCC--CCcccCCccccEEEecCcccCCCCCc-ccccCcCCcEEEee
Q 005278 186 ELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTM--PSSFGSLEYVLYINLSANSLNGSLPS-NIQNLKVLTNLDLS 262 (704)
Q Consensus 186 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~l~ 262 (704)
+|++++|++++..|..+..+++|+.|++++|++++.. |..+..+++|++|++++|.+++.+|. .+..+++|+.|+++
T Consensus 357 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~ 436 (562)
T 3a79_B 357 FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLS 436 (562)
T ss_dssp EEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECC
T ss_pred EEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECC
Confidence 8888888877767777777778888888888777532 34577777888888888887763443 46677778888888
Q ss_pred cCccCCCCCCCcCCCCCcceeeccCceeeccCCcccccccccceEEecccCCCCCCCCC-cccccccCcccccCCC
Q 005278 263 RNQLSGDIPTTIGGLENLETLSLADNQFQGPVPKSFGSLISLESLDLSRNNLSGEIPKN-FSAQSFLSNYALCGPA 337 (704)
Q Consensus 263 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~l~~~~l~g~~ 337 (704)
+|++++.+|..+. ++|+.|+|++|+++ .+|..+..+++|+.|++++|++++ +|.. +...+.+....+.+++
T Consensus 437 ~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 437 SNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp SSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCC
T ss_pred CCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCC
Confidence 8887766665544 67888888888877 677666678888888888888874 4443 6666666666666665
No 260
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=100.00 E-value=5.9e-37 Score=322.04 Aligned_cols=261 Identities=21% Similarity=0.253 Sum_probs=194.6
Q ss_pred hCCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccc--hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCe-----
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQL--ERASRSFDSECEILRSIRHRNLIKIISNCCNIDF----- 485 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~----- 485 (704)
.++|...+.||+|+||.||+|+.. +|+.||||++.... ....+.+.+|+.+++.++||||+++++++.....
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 102 (353)
T 3coi_A 23 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 102 (353)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccce
Confidence 367889999999999999999864 69999999986543 2335678899999999999999999999977653
Q ss_pred -EEEEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeecccee
Q 005278 486 -KALVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKL 564 (704)
Q Consensus 486 -~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~ 564 (704)
.++||||++ |+|.+++.. .+++..+..++.|++.||+|||. .+|+||||||+||+++.++.+||+|||+++.
T Consensus 103 ~~~lv~e~~~-~~l~~~~~~---~~~~~~~~~i~~qi~~al~~LH~---~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~ 175 (353)
T 3coi_A 103 DFYLVMPFMQ-TDLQKIMGL---KFSEEKIQYLVYQMLKGLKYIHS---AGVVHRDLKPGNLAVNEDCELKILDFGLARH 175 (353)
T ss_dssp CCEEEEECCS-EEGGGTTTS---CCCHHHHHHHHHHHHHHHHHHHH---TTCCCSSCCGGGEEECTTCCEEECSTTCTTC
T ss_pred eEEEEecccc-CCHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEeECCCCcEEEeecccccC
Confidence 499999997 688887753 38999999999999999999964 6899999999999999999999999999986
Q ss_pred cCCCCCcceeccccccccccCCcccCC-CCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCC--cch
Q 005278 565 LGEGDDSVIQTMTIATIGYMAPEYGSE-GIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDG--LTE 641 (704)
Q Consensus 565 ~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~--~~~ 641 (704)
.... .....||+.|+|||++.+ ..++.++|||||||++|||++|+.||.+....+ .+........... +..
T Consensus 176 ~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~-~~~~i~~~~~~~~~~~~~ 249 (353)
T 3coi_A 176 ADAE-----MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLD-QLTQILKVTGVPGTEFVQ 249 (353)
T ss_dssp -------------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCHHH-HHHHHHHHHCBCCHHHHT
T ss_pred CCCC-----ccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHHhCCCCHHHHH
Confidence 5322 233468999999998876 678999999999999999999999997632211 1111111100000 000
Q ss_pred hcccc--------chh--hhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 642 VVDAN--------LVR--EEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 642 ~~~~~--------~~~--~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
.+... +.. ..........++..+.+++.+|++.||++||+++|+++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~ 305 (353)
T 3coi_A 250 KLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALT 305 (353)
T ss_dssp TCSCHHHHHHHHTSCBCSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred HHhhHHHHHHHHhCcCCCCccHHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 00000 000 00000111244677899999999999999999999964
No 261
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=100.00 E-value=6.1e-37 Score=338.34 Aligned_cols=262 Identities=23% Similarity=0.288 Sum_probs=197.1
Q ss_pred hCCCCccccccccCceEEEEEEE-CCCCEEEEEEeeccc-hhhhHHHHHHHHHHHhcCCCCCceEEeeeee------CCe
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTL-FDGTNVAIKVFNLQL-ERASRSFDSECEILRSIRHRNLIKIISNCCN------IDF 485 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~------~~~ 485 (704)
.++|.+.+.||+|+||.||+|.. .+|+.||||++.... ....+.+.+|++++++++||||+++++++.. .+.
T Consensus 13 ~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~ 92 (676)
T 3qa8_A 13 CGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDL 92 (676)
T ss_dssp ----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSS
T ss_pred CCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCe
Confidence 47899999999999999999986 468999999987543 3445678999999999999999999998765 667
Q ss_pred EEEEEeccCCCCHHHHHhhCC--CccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCc---EEEeeec
Q 005278 486 KALVLEFMPNGSLEKWLYSHN--YFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMT---AHVSDFG 560 (704)
Q Consensus 486 ~~lv~e~~~~gsL~~~l~~~~--~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~---~kl~Dfg 560 (704)
.++||||+++|+|.+++.... ..+++..++.++.+++.|++|||. .+|+||||||+||+++.++. +||+|||
T Consensus 93 ~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs---~gIVHrDLKP~NILl~~~g~~~~vKL~DFG 169 (676)
T 3qa8_A 93 PLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHE---NRIIHRDLKPENIVLQPGPQRLIHKIIDLG 169 (676)
T ss_dssp CCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHH---TTBCCCCCCSTTEEEECCSSSCEEEECSCC
T ss_pred EEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHH---CCCccCCCCHHHeEeecCCCceeEEEcccc
Confidence 899999999999999998643 358889999999999999999964 78999999999999997665 9999999
Q ss_pred cceecCCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCc-
Q 005278 561 ISKLLGEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGL- 639 (704)
Q Consensus 561 la~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~- 639 (704)
++........ .....||+.|+|||++.+..++.++|||||||++|||++|..||.... ....|.........
T Consensus 170 ~a~~~~~~~~---~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~----~~~~~~~~i~~~~~~ 242 (676)
T 3qa8_A 170 YAKELDQGEL---CTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNW----QPVQWHGKVREKSNE 242 (676)
T ss_dssp CCCBTTSCCC---CCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSC----HHHHSSTTCC-----
T ss_pred cccccccccc---cccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCccc----chhhhhhhhhcccch
Confidence 9987654322 234579999999999999999999999999999999999999996521 11222111110000
Q ss_pred ----chhccccchhh---hhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHH
Q 005278 640 ----TEVVDANLVRE---EQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDA 685 (704)
Q Consensus 640 ----~~~~~~~~~~~---~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev 685 (704)
........... ..........+..+.+++..|++.||++|||+.|+
T Consensus 243 ~~~~~~~l~g~~~~~~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~el 295 (676)
T 3qa8_A 243 HIVVYDDLTGAVKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQN 295 (676)
T ss_dssp -CCSCCCCSSSCCCCSSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCTTC
T ss_pred hhhhhhhhccccccccccCCchhhchhhhHHHHHHHHHHccCCHhhCcCHHHH
Confidence 00000000000 00111223457789999999999999999999884
No 262
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.2e-35 Score=338.89 Aligned_cols=331 Identities=18% Similarity=0.211 Sum_probs=256.4
Q ss_pred CCCCCCCEEecCCCcCcc-----------------cCCcccc--CCCCCCEEeccCccccccCchhhcCCCCCCEEeccc
Q 005278 3 YMLPNLKYLTLFDNKLSG-----------------TIPNSIT--NASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAY 63 (704)
Q Consensus 3 ~~l~~l~~L~l~~~~i~~-----------------~~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 63 (704)
+.|++|+.|+|++|.+++ .+|..++ ++++|++|+|++|.+.+.+|..|.++++|++|+|++
T Consensus 445 ~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~ 524 (876)
T 4ecn_A 445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC 524 (876)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTT
T ss_pred hcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcC
Confidence 468899999999999997 3899988 999999999999999999999999999999999999
Q ss_pred cc-CCC-cccchhhcccccCCCCCCCcEEEccCCCCcccCCh--hhhhcccccceEEecCCcccccCChhhhcCCCCCEE
Q 005278 64 NY-LMT-ESSAAKWNFLSSLTNCRNLTVLGLASNPLRGILPP--LIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGMIVF 139 (704)
Q Consensus 64 n~-i~~-~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 139 (704)
|+ ++. ..+.....+...+..+++|++|+|++|++. .+|. .+..+. +|++|+|++|.++ .+| .++++++|++|
T Consensus 525 N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~-~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L 600 (876)
T 4ecn_A 525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMV-KLGLLDCVHNKVR-HLE-AFGTNVKLTDL 600 (876)
T ss_dssp CTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCT-TCCEEECTTSCCC-BCC-CCCTTSEESEE
T ss_pred CCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCC-CCCEEECCCCCcc-cch-hhcCCCcceEE
Confidence 98 765 211110111124566779999999999999 7777 788775 7999999999998 777 88999999999
Q ss_pred EccCCcCccccChhhcCCCC-cCeeeccCcccCCCCCccccCCCC--CCEEEcCCCcCCccCCccc---c--CcCCCCEE
Q 005278 140 DLNGCDLNGTIPTAVGRLRR-LQGLYLHGNKLQGSIPYDLCHLEG--LSELNLNGNKLCGHVPPCL---A--SLTSLRRL 211 (704)
Q Consensus 140 ~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~L~~n~l~~~~~~~~---~--~l~~L~~L 211 (704)
+|++|.+. .+|..+..+++ |+.|+|++|+++ .+|..+..++. |+.|+|++|++++.+|... . .+++|+.|
T Consensus 601 ~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L 678 (876)
T 4ecn_A 601 KLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV 678 (876)
T ss_dssp ECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEE
T ss_pred ECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEE
Confidence 99999999 78888999988 999999999998 77877777654 8888888888886655322 2 33478888
Q ss_pred EecCccCCCCCCCcccCCccccEEEecCcccCCCCCccccc--------CcCCcEEEeecCccCCCCCCCcC--CCCCcc
Q 005278 212 HLGSNKLTSTMPSSFGSLEYVLYINLSANSLNGSLPSNIQN--------LKVLTNLDLSRNQLSGDIPTTIG--GLENLE 281 (704)
Q Consensus 212 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~ 281 (704)
++++|.++...+..+..+++|+.|+|++|.+. .+|..+.. +++|+.|+|++|+++ .+|..+. .+++|+
T Consensus 679 ~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~ 756 (876)
T 4ecn_A 679 TLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLS 756 (876)
T ss_dssp ECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCC
T ss_pred EccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcC
Confidence 88888887433333447788888888888887 44444332 237888888888887 6777776 788888
Q ss_pred eeeccCceeeccCCcccccccccceEEecc------cCCCCCCCCCcccccccCcccccCCCccCCC
Q 005278 282 TLSLADNQFQGPVPKSFGSLISLESLDLSR------NNLSGEIPKNFSAQSFLSNYALCGPARLQVP 342 (704)
Q Consensus 282 ~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~------N~l~~~~p~~~~~~~~l~~~~l~g~~~~~~~ 342 (704)
.|+|++|++++ +|..+..+++|+.|+|++ |.+.+.+|..+...+.+..+.+.++....+|
T Consensus 757 ~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip 822 (876)
T 4ecn_A 757 NMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVD 822 (876)
T ss_dssp EEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCC
T ss_pred EEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccC
Confidence 88888888875 677777888888888865 6677778877777777777777776654433
No 263
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=7.8e-35 Score=333.67 Aligned_cols=329 Identities=20% Similarity=0.200 Sum_probs=233.2
Q ss_pred CCEEecCCCcCcccCCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhccc----ccCCC
Q 005278 8 LKYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFL----SSLTN 83 (704)
Q Consensus 8 l~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~----~~~~~ 83 (704)
|+.|+|++|.+++..|..|.++++|++|+|++|.++++.+..|.++++|++|++++|......... .++ ..|..
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~--~lp~i~~~~~~~ 327 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA--SLPKIDDFSFQW 327 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC--------CCEECTTTTTT
T ss_pred CCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccc--cccccChhhccc
Confidence 666666666666555555666666666666666666555555555555555555443222100000 011 13556
Q ss_pred CCCCcEEEccCCCCcccCChhhhhcc---------------------------cccceEEecCCcccccCChhhhcCCCC
Q 005278 84 CRNLTVLGLASNPLRGILPPLIGNFS---------------------------ASLQEFYAYGCKLRGNIPQEIGNLSGM 136 (704)
Q Consensus 84 l~~L~~L~L~~n~i~~~~~~~~~~~~---------------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L 136 (704)
+++|++|++++|++.+..+..|..+. ++|++|++++|++++..|..+..+++|
T Consensus 328 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 407 (680)
T 1ziw_A 328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL 407 (680)
T ss_dssp CTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCC
Confidence 66777777777776665555554432 245666666677777777788888888
Q ss_pred CEEEccCCcCccccC-hhhcCCCCcCeeeccCcccCCCCCccccCCCCCCEEEcCCCcCC--ccCCccccCcCCCCEEEe
Q 005278 137 IVFDLNGCDLNGTIP-TAVGRLRRLQGLYLHGNKLQGSIPYDLCHLEGLSELNLNGNKLC--GHVPPCLASLTSLRRLHL 213 (704)
Q Consensus 137 ~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~l 213 (704)
++|+|++|.+.+.++ ..|.++++|++|++++|++++..+..+..+++|+.|++++|.++ +..|..+..+++|+.|++
T Consensus 408 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~L 487 (680)
T 1ziw_A 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL 487 (680)
T ss_dssp CEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEEC
T ss_pred CEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEEC
Confidence 888888888876554 57888888888888888888777778888888888888888876 466778888899999999
Q ss_pred cCccCCCCCCCcccCCccccEEEecCcccCCCC--------CcccccCcCCcEEEeecCccCCCCCCCcCCCCCcceeec
Q 005278 214 GSNKLTSTMPSSFGSLEYVLYINLSANSLNGSL--------PSNIQNLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSL 285 (704)
Q Consensus 214 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~--------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 285 (704)
++|.+++..+..|..+++|++|++++|.+++.. +..+.++++|+.|++++|+++...+..|.++++|+.|+|
T Consensus 488 s~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 567 (680)
T 1ziw_A 488 SNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDL 567 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeEC
Confidence 999998877788888999999999999887432 223778888999999999998544457888999999999
Q ss_pred cCceeeccCCcccccccccceEEecccCCCCCCCCCcc-cccccCcccccCCCc
Q 005278 286 ADNQFQGPVPKSFGSLISLESLDLSRNNLSGEIPKNFS-AQSFLSNYALCGPAR 338 (704)
Q Consensus 286 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~-~~~~l~~~~l~g~~~ 338 (704)
++|++++..+..|..+++|+.|++++|++++..|..|. ..+.+....+.|+|.
T Consensus 568 s~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~ 621 (680)
T 1ziw_A 568 GLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 621 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCC
T ss_pred CCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCc
Confidence 99999876666778889999999999999887776665 555666667777764
No 264
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=339.02 Aligned_cols=305 Identities=21% Similarity=0.223 Sum_probs=268.2
Q ss_pred CCCCCCEEecCCCcCcccCCccccCCCCCCEEeccCcccc-ccCchhhcCCCCCCEEecccccCCCcccchhhcccccCC
Q 005278 4 MLPNLKYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFS-GLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLT 82 (704)
Q Consensus 4 ~l~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~ 82 (704)
..++++.|+|++|.|+++.+..|.++++|+.|+|++|.+. .+.|.+|.++++|++|+|++|.+..+... .|.
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~-------~~~ 94 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD-------AFQ 94 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT-------SSC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh-------Hcc
Confidence 4588999999999999989999999999999999999544 55589999999999999999999886544 499
Q ss_pred CCCCCcEEEccCCCCcccCChh--hhhcccccceEEecCCcccccCC-hhhhcCCCCCEEEccCCcCccccChhhcCC--
Q 005278 83 NCRNLTVLGLASNPLRGILPPL--IGNFSASLQEFYAYGCKLRGNIP-QEIGNLSGMIVFDLNGCDLNGTIPTAVGRL-- 157 (704)
Q Consensus 83 ~l~~L~~L~L~~n~i~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-- 157 (704)
++++|++|+|++|.+.+..|.. +..+ ++|++|+|++|.+.+..+ ..|+++++|++|+|++|.+++..+..+..+
T Consensus 95 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~L-~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~ 173 (844)
T 3j0a_A 95 GLFHLFELRLYFCGLSDAVLKDGYFRNL-KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG 173 (844)
T ss_dssp SCSSCCCEECTTCCCSSCCSTTCCCSSC-SSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH
T ss_pred CCcccCEeeCcCCCCCcccccCcccccc-CCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccC
Confidence 9999999999999999866654 6666 479999999999998755 679999999999999999998889888887
Q ss_pred CCcCeeeccCcccCCCCCccccCCCC------CCEEEcCCCcCCccCCccccC---------------------------
Q 005278 158 RRLQGLYLHGNKLQGSIPYDLCHLEG------LSELNLNGNKLCGHVPPCLAS--------------------------- 204 (704)
Q Consensus 158 ~~L~~L~L~~n~l~~~~~~~l~~l~~------L~~L~L~~n~l~~~~~~~~~~--------------------------- 204 (704)
++|+.|+++.|.+++..|..+..+++ |++|++++|.+++..+..+..
T Consensus 174 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~ 253 (844)
T 3j0a_A 174 KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK 253 (844)
T ss_dssp CSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSST
T ss_pred CccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccC
Confidence 89999999999999888877777665 999999999877655443322
Q ss_pred -----------cCCCCEEEecCccCCCCCCCcccCCccccEEEecCcccCCCCCcccccCcCCcEEEeecCccCCCCCCC
Q 005278 205 -----------LTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLNGSLPSNIQNLKVLTNLDLSRNQLSGDIPTT 273 (704)
Q Consensus 205 -----------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 273 (704)
.++|+.|++++|.+.+..+..|..+++|+.|+|++|.+.+..+..|..+++|+.|++++|++++..|..
T Consensus 254 ~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 333 (844)
T 3j0a_A 254 DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSN 333 (844)
T ss_dssp TGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCS
T ss_pred CCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHH
Confidence 268999999999999888889999999999999999999888889999999999999999999888889
Q ss_pred cCCCCCcceeeccCceeeccCCcccccccccceEEecccCCCC
Q 005278 274 IGGLENLETLSLADNQFQGPVPKSFGSLISLESLDLSRNNLSG 316 (704)
Q Consensus 274 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 316 (704)
|.++++|+.|++++|++++..+..|..+++|+.|++++|.+++
T Consensus 334 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 334 FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp CSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred hcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence 9999999999999999988778889999999999999999875
No 265
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.4e-35 Score=338.48 Aligned_cols=318 Identities=19% Similarity=0.264 Sum_probs=273.2
Q ss_pred CCCCCCEEecCCCcCcccCCccccCCCCCCEEeccCcc-ccc-cCchhhcCCC-------CCCEEecccccCCCcccchh
Q 005278 4 MLPNLKYLTLFDNKLSGTIPNSITNASKLIMLDLSSNS-FSG-LIPNTFGNLG-------SLQVLSLAYNYLMTESSAAK 74 (704)
Q Consensus 4 ~l~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~-i~~-~~~~~~~~l~-------~L~~L~L~~n~i~~~~~~~~ 74 (704)
.+++|+.|+|++|.+.+.+|..|.++++|++|+|++|. +++ .+|..|.+++ +|++|+|++|.++.++..
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~-- 566 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS-- 566 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCH--
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCCh--
Confidence 78999999999999999999999999999999999998 987 7787776665 999999999999854320
Q ss_pred hcccccCCCCCCCcEEEccCCCCcccCChhhhhcccccceEEecCCcccccCChhhhcCCC-CCEEEccCCcCccccChh
Q 005278 75 WNFLSSLTNCRNLTVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSG-MIVFDLNGCDLNGTIPTA 153 (704)
Q Consensus 75 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~ 153 (704)
..+.++++|++|+|++|++. .+| .+..+ ++|++|+|++|.+. .+|..+.++++ |++|+|++|.+. .+|..
T Consensus 567 ----~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L-~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~ 637 (876)
T 4ecn_A 567 ----ASLQKMVKLGLLDCVHNKVR-HLE-AFGTN-VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNI 637 (876)
T ss_dssp ----HHHTTCTTCCEEECTTSCCC-BCC-CCCTT-SEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSC
T ss_pred ----hhhhcCCCCCEEECCCCCcc-cch-hhcCC-CcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchh
Confidence 04899999999999999999 777 67666 47999999999999 88989999999 999999999999 77888
Q ss_pred hcCCCC--cCeeeccCcccCCCCCccc---c--CCCCCCEEEcCCCcCCccCCcc-ccCcCCCCEEEecCccCCCCCCCc
Q 005278 154 VGRLRR--LQGLYLHGNKLQGSIPYDL---C--HLEGLSELNLNGNKLCGHVPPC-LASLTSLRRLHLGSNKLTSTMPSS 225 (704)
Q Consensus 154 ~~~l~~--L~~L~L~~n~l~~~~~~~l---~--~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~ 225 (704)
+..++. |+.|+|++|++++.+|... . .+++|+.|+|++|+++ .+|.. +..+++|+.|+|++|.++...+..
T Consensus 638 ~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~ 716 (876)
T 4ecn_A 638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENS 716 (876)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTS
T ss_pred hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHH
Confidence 887755 9999999999997665322 2 3458999999999999 55654 458999999999999999433333
Q ss_pred ccC-------CccccEEEecCcccCCCCCcccc--cCcCCcEEEeecCccCCCCCCCcCCCCCcceeeccC------cee
Q 005278 226 FGS-------LEYVLYINLSANSLNGSLPSNIQ--NLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSLAD------NQF 290 (704)
Q Consensus 226 ~~~-------l~~L~~L~l~~N~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~------n~l 290 (704)
+.. +++|+.|+|++|.++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+|++ |++
T Consensus 717 ~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l 794 (876)
T 4ecn_A 717 LKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRI 794 (876)
T ss_dssp SSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBC
T ss_pred hccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccc
Confidence 332 349999999999999 7888887 99999999999999996 899999999999999976 888
Q ss_pred eccCCcccccccccceEEecccCCCCCCCCCcccccccCcccccCCCc
Q 005278 291 QGPVPKSFGSLISLESLDLSRNNLSGEIPKNFSAQSFLSNYALCGPAR 338 (704)
Q Consensus 291 ~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~l~g~~~ 338 (704)
.+.+|..+..+++|+.|+|++|++ +.+|..+. +.+....+.+++.
T Consensus 795 ~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 795 LRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPN 839 (876)
T ss_dssp CCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTT
T ss_pred cccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCC
Confidence 899999999999999999999999 78888654 4677777777764
No 266
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=100.00 E-value=7.6e-36 Score=302.92 Aligned_cols=232 Identities=12% Similarity=0.064 Sum_probs=183.8
Q ss_pred CCCCccccccccCceEEEEEEEC-CCCEEEEEEeeccch---hhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEE
Q 005278 415 NGFNECNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQLE---RASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVL 490 (704)
Q Consensus 415 ~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 490 (704)
++|++.+.||+|+||.||+|+.. +++.||||++..... ...+.+.+|+..+++++||||+++++++...+..++||
T Consensus 31 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 110 (286)
T 3uqc_A 31 GRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVA 110 (286)
T ss_dssp TTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred CcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEEE
Confidence 67999999999999999999975 589999999975532 23467899999999999999999999999999999999
Q ss_pred eccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCCC
Q 005278 491 EFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGDD 570 (704)
Q Consensus 491 e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~~ 570 (704)
||+++++|.+++... ........++.|++.||+||| +.+|+||||||+||+++.++.+||+++|
T Consensus 111 e~~~g~~L~~~l~~~---~~~~~~~~i~~ql~~aL~~lH---~~givH~Dikp~NIll~~~g~~kl~~~~---------- 174 (286)
T 3uqc_A 111 EWIRGGSLQEVADTS---PSPVGAIRAMQSLAAAADAAH---RAGVALSIDHPSRVRVSIDGDVVLAYPA---------- 174 (286)
T ss_dssp ECCCEEEHHHHHTTC---CCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEEETTSCEEECSCC----------
T ss_pred EecCCCCHHHHHhcC---CChHHHHHHHHHHHHHHHHHH---HCCCccCCCCcccEEEcCCCCEEEEecc----------
Confidence 999999999999643 355678889999999999995 4689999999999999999999997443
Q ss_pred cceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccchhh
Q 005278 571 SVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLVRE 650 (704)
Q Consensus 571 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (704)
|++| ++.++|||||||++|||+||+.||.+........ ...........
T Consensus 175 ------------~~~~-------~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~----------~~~~~~~~~~~-- 223 (286)
T 3uqc_A 175 ------------TMPD-------ANPQDDIRGIGASLYALLVNRWPLPEAGVRSGLA----------PAERDTAGQPI-- 223 (286)
T ss_dssp ------------CCTT-------CCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCSE----------ECCBCTTSCBC--
T ss_pred ------------ccCC-------CCchhHHHHHHHHHHHHHHCCCCCCcCCcchhhH----------HHHHHhccCCC--
Confidence 3333 6789999999999999999999997632211000 00000000000
Q ss_pred hhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHHH
Q 005278 651 EQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAAKLKKIKEK 695 (704)
Q Consensus 651 ~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~~L~~~~~~ 695 (704)
.......+++..+.+++.+||+.||++| |+.|+++.|+++...
T Consensus 224 -~~~~~~~~~~~~l~~li~~~l~~dP~~R-s~~el~~~L~~~~~~ 266 (286)
T 3uqc_A 224 -EPADIDRDIPFQISAVAARSVQGDGGIR-SASTLLNLMQQATAV 266 (286)
T ss_dssp -CHHHHCTTSCHHHHHHHHHHHCTTSSCC-CHHHHHHHHHHHHC-
T ss_pred -ChhhcccCCCHHHHHHHHHHcccCCccC-CHHHHHHHHHHHhcc
Confidence 0011222456778999999999999999 999999999997644
No 267
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5.8e-35 Score=326.53 Aligned_cols=303 Identities=23% Similarity=0.275 Sum_probs=251.5
Q ss_pred CCCCCCCEEecCCCcCcccCCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccCC
Q 005278 3 YMLPNLKYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLT 82 (704)
Q Consensus 3 ~~l~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~ 82 (704)
..+++|++|+|++|.+++..|+.|.++++|++|+|++|.++.+.+. .+++|++|+|++|.++.++. +..|.
T Consensus 73 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~------p~~~~ 143 (562)
T 3a79_B 73 SFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC---PMASLRHLDLSFNDFDVLPV------CKEFG 143 (562)
T ss_dssp TTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC---CCTTCSEEECCSSCCSBCCC------CGGGG
T ss_pred ccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc---ccccCCEEECCCCCccccCc------hHhhc
Confidence 5689999999999999988899999999999999999999965443 89999999999999987652 23488
Q ss_pred CCCCCcEEEccCCCCcccCChhhhhcccccceEEecCCcc--cccCChhhhcCC--------------------------
Q 005278 83 NCRNLTVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKL--RGNIPQEIGNLS-------------------------- 134 (704)
Q Consensus 83 ~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l--~~~~~~~~~~l~-------------------------- 134 (704)
++++|++|+|++|++.......+..+ +|++|++++|.+ ++..|..+..+.
T Consensus 144 ~l~~L~~L~L~~n~l~~~~~~~l~~L--~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~ 221 (562)
T 3a79_B 144 NLTKLTFLGLSAAKFRQLDLLPVAHL--HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALG 221 (562)
T ss_dssp GCTTCCEEEEECSBCCTTTTGGGTTS--CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEE
T ss_pred ccCcccEEecCCCccccCchhhhhhc--eeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccc
Confidence 99999999999999886443333333 348888888877 555555544432
Q ss_pred -------------------------------------------------------CCCEEEccCCcCccccChhh-----
Q 005278 135 -------------------------------------------------------GMIVFDLNGCDLNGTIPTAV----- 154 (704)
Q Consensus 135 -------------------------------------------------------~L~~L~L~~n~l~~~~~~~~----- 154 (704)
+|++|++++|.+.+.+|..+
T Consensus 222 ~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~ 301 (562)
T 3a79_B 222 HLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSE 301 (562)
T ss_dssp EEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCS
T ss_pred eEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhccc
Confidence 56667777776665555443
Q ss_pred ------------------------------------------------cCCCCcCeeeccCcccCCCCCccccCCCCCCE
Q 005278 155 ------------------------------------------------GRLRRLQGLYLHGNKLQGSIPYDLCHLEGLSE 186 (704)
Q Consensus 155 ------------------------------------------------~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 186 (704)
..+++|++|++++|++++..|..+..+++|++
T Consensus 302 ~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 381 (562)
T 3a79_B 302 TALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQT 381 (562)
T ss_dssp CSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCE
T ss_pred ccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCE
Confidence 67889999999999999889999999999999
Q ss_pred EEcCCCcCCcc--CCccccCcCCCCEEEecCccCCCCCC-CcccCCccccEEEecCcccCCCCCcccccCcCCcEEEeec
Q 005278 187 LNLNGNKLCGH--VPPCLASLTSLRRLHLGSNKLTSTMP-SSFGSLEYVLYINLSANSLNGSLPSNIQNLKVLTNLDLSR 263 (704)
Q Consensus 187 L~L~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 263 (704)
|+|++|++++. .|..+..+++|+.|++++|.+++.+| ..+..+++|++|++++|.+++..|..+. ++|+.|++++
T Consensus 382 L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~ 459 (562)
T 3a79_B 382 LILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHN 459 (562)
T ss_dssp EECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCS
T ss_pred EECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCC
Confidence 99999999963 34678999999999999999998444 4688999999999999999876666554 6899999999
Q ss_pred CccCCCCCCCcCCCCCcceeeccCceeeccCCcc-cccccccceEEecccCCCCCCCC
Q 005278 264 NQLSGDIPTTIGGLENLETLSLADNQFQGPVPKS-FGSLISLESLDLSRNNLSGEIPK 320 (704)
Q Consensus 264 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~l~~N~l~~~~p~ 320 (704)
|+++ .+|..+..+++|+.|+|++|+++ .+|.. +..+++|+.|++++|++.|..|-
T Consensus 460 N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 460 NRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp SCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred CcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 9999 78887889999999999999999 56665 99999999999999999987653
No 268
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=100.00 E-value=4.9e-36 Score=341.63 Aligned_cols=242 Identities=22% Similarity=0.287 Sum_probs=195.3
Q ss_pred hCCCCccccccccCceEEEEEEEC--CCCEEEEEEeeccc-hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCe-----
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLF--DGTNVAIKVFNLQL-ERASRSFDSECEILRSIRHRNLIKIISNCCNIDF----- 485 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~--~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~----- 485 (704)
.++|.+.+.||+|+||.||+|... +|+.||||++.... ......+.+|++++++++||||+++++++...+.
T Consensus 79 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~ 158 (681)
T 2pzi_A 79 AGQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPV 158 (681)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEE
T ss_pred CCceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCce
Confidence 368999999999999999999875 68999999986443 3345678899999999999999999999987655
Q ss_pred EEEEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceec
Q 005278 486 KALVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLL 565 (704)
Q Consensus 486 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~ 565 (704)
.++||||+++++|.+++.. .+++..++.++.|++.||+||| +.+|+||||||+||+++.+ .+||+|||+++..
T Consensus 159 ~~lv~E~~~g~~L~~~~~~---~l~~~~~~~~~~qi~~aL~~lH---~~giiHrDlkp~NIll~~~-~~kl~DFG~a~~~ 231 (681)
T 2pzi_A 159 GYIVMEYVGGQSLKRSKGQ---KLPVAEAIAYLLEILPALSYLH---SIGLVYNDLKPENIMLTEE-QLKLIDLGAVSRI 231 (681)
T ss_dssp EEEEEECCCCEECC----C---CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECSS-CEEECCCTTCEET
T ss_pred eEEEEEeCCCCcHHHHHhC---CCCHHHHHHHHHHHHHHHHHHH---HCCCeecccChHHeEEeCC-cEEEEecccchhc
Confidence 6999999999999988765 4899999999999999999995 4689999999999999985 8999999999876
Q ss_pred CCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccc
Q 005278 566 GEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDA 645 (704)
Q Consensus 566 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (704)
... ....||++|+|||++.+.. +.++|||||||++|||++|..||.+...... .
T Consensus 232 ~~~------~~~~gt~~y~aPE~~~~~~-~~~sDi~slG~~l~~l~~g~~~~~~~~~~~~--------------~----- 285 (681)
T 2pzi_A 232 NSF------GYLYGTPGFQAPEIVRTGP-TVATDIYTVGRTLAALTLDLPTRNGRYVDGL--------------P----- 285 (681)
T ss_dssp TCC------SCCCCCTTTSCTTHHHHCS-CHHHHHHHHHHHHHHHHSCCCEETTEECSSC--------------C-----
T ss_pred ccC------CccCCCccccCHHHHcCCC-CCceehhhhHHHHHHHHhCCCCCcccccccc--------------c-----
Confidence 432 3356999999999887654 8899999999999999999988765321110 0
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCC-HHHHHHHHHHhHHH
Q 005278 646 NLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVS-MKDAAAKLKKIKEK 695 (704)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt-~~ev~~~L~~~~~~ 695 (704)
. .......+..+.+++.+||+.||++||+ ++++...|..+.+.
T Consensus 286 ---~----~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~~~ 329 (681)
T 2pzi_A 286 ---E----DDPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGVLRE 329 (681)
T ss_dssp ---T----TCHHHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHHHH
T ss_pred ---c----cccccccCHHHHHHHhhhccCChhhCCCHHHHHHHHHHHHHHH
Confidence 0 0011123456889999999999999994 67777777776543
No 269
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.7e-35 Score=328.62 Aligned_cols=322 Identities=24% Similarity=0.252 Sum_probs=223.3
Q ss_pred CCCCEEecCCCcCcccCCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccCCCCC
Q 005278 6 PNLKYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTNCR 85 (704)
Q Consensus 6 ~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~l~ 85 (704)
++++.|+|++|.++++.+..|.++++|++|+|++|.++++.+.+|.++++|++|+|++|.++.++... |.+++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~-------~~~l~ 100 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA-------FSGLS 100 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT-------TTTCT
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhh-------hcCcc
Confidence 47999999999999888889999999999999999999999999999999999999999998876544 99999
Q ss_pred CCcEEEccCCCCcccCChhhhhcccccceEEecCCcccc-cCChhhhcCCCCCEEEccCCcCccccChhhcCCCC-----
Q 005278 86 NLTVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRG-NIPQEIGNLSGMIVFDLNGCDLNGTIPTAVGRLRR----- 159 (704)
Q Consensus 86 ~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~----- 159 (704)
+|++|+|++|++....+..+..+ ++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..++.+++
T Consensus 101 ~L~~L~L~~n~l~~l~~~~~~~l-~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~ 179 (570)
T 2z63_A 101 SLQKLVAVETNLASLENFPIGHL-KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179 (570)
T ss_dssp TCCEEECTTSCCCCSTTCSCTTC-TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCC
T ss_pred ccccccccccccccCCCcccccc-ccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhh
Confidence 99999999999997766667776 479999999999997 47999999999999999999998765554444333
Q ss_pred --------------------------------------------------------------------------------
Q 005278 160 -------------------------------------------------------------------------------- 159 (704)
Q Consensus 160 -------------------------------------------------------------------------------- 159 (704)
T Consensus 180 ~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l 259 (570)
T 2z63_A 180 LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259 (570)
T ss_dssp CEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEE
T ss_pred hhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccch
Confidence
Q ss_pred ------------------------cCeeeccCcccCCCCCcccc------------------------------------
Q 005278 160 ------------------------LQGLYLHGNKLQGSIPYDLC------------------------------------ 179 (704)
Q Consensus 160 ------------------------L~~L~L~~n~l~~~~~~~l~------------------------------------ 179 (704)
|+.|++++|.++ .+|..+.
T Consensus 260 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~ 338 (570)
T 2z63_A 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG 338 (570)
T ss_dssp EEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSC
T ss_pred hhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccc
Confidence 333444444333 2222222
Q ss_pred ------CCCCCCEEEcCCCcCCccC--CccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCcccCCCCC-ccc
Q 005278 180 ------HLEGLSELNLNGNKLCGHV--PPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLNGSLP-SNI 250 (704)
Q Consensus 180 ------~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~ 250 (704)
.+++|++|++++|++++.. +..+..+++|+.|++++|.+.+..+ .+..+++|++|++++|.+.+..+ ..+
T Consensus 339 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~ 417 (570)
T 2z63_A 339 NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVF 417 (570)
T ss_dssp CBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTT
T ss_pred cccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhh
Confidence 2334444444444443221 2333444455555555554443222 25555666666666666654444 345
Q ss_pred ccCcCCcEEEeecCccCCCCCCCcCCCCCcceeeccCceee-ccCCcccccccccceEEecccCCCCCCCCCcccccccC
Q 005278 251 QNLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSLADNQFQ-GPVPKSFGSLISLESLDLSRNNLSGEIPKNFSAQSFLS 329 (704)
Q Consensus 251 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~ 329 (704)
..+++|+.|++++|++.+..|..+.++++|+.|++++|.++ +.+|..+..+++|+.|++++|++++..|..|...+.+.
T Consensus 418 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 497 (570)
T 2z63_A 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497 (570)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred hcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCC
Confidence 66666666666666666666666666666666666666665 45666666666666666666666666666665555555
Q ss_pred cccccCCC
Q 005278 330 NYALCGPA 337 (704)
Q Consensus 330 ~~~l~g~~ 337 (704)
...+.++.
T Consensus 498 ~L~l~~n~ 505 (570)
T 2z63_A 498 VLNMASNQ 505 (570)
T ss_dssp EEECCSSC
T ss_pred EEeCCCCc
Confidence 55555443
No 270
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.3e-34 Score=321.09 Aligned_cols=310 Identities=21% Similarity=0.213 Sum_probs=257.4
Q ss_pred CEEecCCCcCcccCCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccCCCCCCCc
Q 005278 9 KYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTNCRNLT 88 (704)
Q Consensus 9 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~l~~L~ 88 (704)
++|++++|+++ .+|..+. ++|++|+|++|.++++.+..|.++++|++|+|++|+++.+.... |.++++|+
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-------~~~l~~L~ 72 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISV-------FKFNQELE 72 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGG-------GTTCTTCC
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHH-------hhcccCCC
Confidence 68999999999 6788776 89999999999999999999999999999999999998865444 99999999
Q ss_pred EEEccCCCCcccCChhhhhcccccceEEecCCcccc-cCChhhhcCCCCCEEEccCCcCccccChhhcCCCCc--Ceeec
Q 005278 89 VLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRG-NIPQEIGNLSGMIVFDLNGCDLNGTIPTAVGRLRRL--QGLYL 165 (704)
Q Consensus 89 ~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~L 165 (704)
+|+|++|+++. +|.. . .++|++|++++|.+++ .+|..++++++|++|++++|.+.+ ..+..+++| +.|++
T Consensus 73 ~L~Ls~N~l~~-lp~~--~-l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l 145 (520)
T 2z7x_B 73 YLDLSHNKLVK-ISCH--P-TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLL 145 (520)
T ss_dssp EEECCSSCCCE-EECC--C-CCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEE
T ss_pred EEecCCCceee-cCcc--c-cCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEe
Confidence 99999999995 4544 3 4589999999999998 478999999999999999999985 467778888 99999
Q ss_pred cCccc--CCCCCccccCCC-------------------------------------------------------------
Q 005278 166 HGNKL--QGSIPYDLCHLE------------------------------------------------------------- 182 (704)
Q Consensus 166 ~~n~l--~~~~~~~l~~l~------------------------------------------------------------- 182 (704)
++|.+ ++..|..+..+.
T Consensus 146 ~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L 225 (520)
T 2z7x_B 146 VLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNL 225 (520)
T ss_dssp EECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEE
T ss_pred ecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhc
Confidence 99999 666676666533
Q ss_pred ----------------------CCCEEEcCCCcCCccCCccc-----cCcCCCCEEEecCccC-----------------
Q 005278 183 ----------------------GLSELNLNGNKLCGHVPPCL-----ASLTSLRRLHLGSNKL----------------- 218 (704)
Q Consensus 183 ----------------------~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l----------------- 218 (704)
+|++|++++|++++.+|..+ ..+++|+.+++++|.+
T Consensus 226 ~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~ 305 (520)
T 2z7x_B 226 TLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIK 305 (520)
T ss_dssp EEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCS
T ss_pred cccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCcee
Confidence 68888888888887777776 6666555555555554
Q ss_pred ---------CCCCCCcccCCccccEEEecCcccCCCCCcccccCcCCcEEEeecCccCC--CCCCCcCCCCCcceeeccC
Q 005278 219 ---------TSTMPSSFGSLEYVLYINLSANSLNGSLPSNIQNLKVLTNLDLSRNQLSG--DIPTTIGGLENLETLSLAD 287 (704)
Q Consensus 219 ---------~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~ 287 (704)
.... .+..+++|++|++++|.+++..|..+..+++|+.|++++|++++ .+|..++.+++|+.|++++
T Consensus 306 ~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~ 383 (520)
T 2z7x_B 306 NFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQ 383 (520)
T ss_dssp EEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCS
T ss_pred EEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCC
Confidence 2111 12678999999999999999899999999999999999999996 5567799999999999999
Q ss_pred ceeeccCCc-ccccccccceEEecccCCCCCCCCCcccccccCcccccCCCcc
Q 005278 288 NQFQGPVPK-SFGSLISLESLDLSRNNLSGEIPKNFSAQSFLSNYALCGPARL 339 (704)
Q Consensus 288 n~l~~~~p~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~l~g~~~~ 339 (704)
|++++.+|. .+..+++|+.|++++|++++..|..+. ..+....+.++...
T Consensus 384 N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~ 434 (520)
T 2z7x_B 384 NSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK 434 (520)
T ss_dssp SCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC
T ss_pred CcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc
Confidence 999985665 488999999999999999987776553 34455555555433
No 271
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4.8e-35 Score=326.90 Aligned_cols=154 Identities=24% Similarity=0.300 Sum_probs=83.4
Q ss_pred CCCCCCEEEcCCCcCCccCC---ccccCcCCCCEEEecCccCCCCCC--CcccCCccccEEEecCcccCCCCCcccccCc
Q 005278 180 HLEGLSELNLNGNKLCGHVP---PCLASLTSLRRLHLGSNKLTSTMP--SSFGSLEYVLYINLSANSLNGSLPSNIQNLK 254 (704)
Q Consensus 180 ~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 254 (704)
.+++|++|+|++|++++..| ..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.++ .+|..+..++
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~ 410 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPE 410 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCT
T ss_pred cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccc
Confidence 35555666666666554332 224455555566665555553321 23555556666666666655 4555555555
Q ss_pred CCcEEEeecCccCCCCCCCc------------------CCCCCcceeeccCceeeccCCcccccccccceEEecccCCCC
Q 005278 255 VLTNLDLSRNQLSGDIPTTI------------------GGLENLETLSLADNQFQGPVPKSFGSLISLESLDLSRNNLSG 316 (704)
Q Consensus 255 ~L~~L~l~~n~l~~~~~~~~------------------~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 316 (704)
+|+.|++++|+++ .+|..+ ..+++|+.|+|++|+++ .+|. ...+++|+.|++++|++++
T Consensus 411 ~L~~L~Ls~N~l~-~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~ 487 (549)
T 2z81_A 411 KMRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKS 487 (549)
T ss_dssp TCCEEECTTSCCS-CCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCC
T ss_pred cccEEECCCCCcc-cccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCC
Confidence 5555555555554 222211 24556666666666665 4444 3456666666666666666
Q ss_pred CCCCCcccccccCcccccCCC
Q 005278 317 EIPKNFSAQSFLSNYALCGPA 337 (704)
Q Consensus 317 ~~p~~~~~~~~l~~~~l~g~~ 337 (704)
..|..+...+.+....+.+++
T Consensus 488 ~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 488 VPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp CCTTGGGGCTTCCEEECCSSC
T ss_pred cCHHHHhcCcccCEEEecCCC
Confidence 555555555555555555554
No 272
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=8.4e-34 Score=325.12 Aligned_cols=325 Identities=23% Similarity=0.224 Sum_probs=168.8
Q ss_pred CCCCCEEecCCCcCcccCCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccCCCC
Q 005278 5 LPNLKYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTNC 84 (704)
Q Consensus 5 l~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~l 84 (704)
+++|++|+|++|.+++..+..|.++++|++|+|++|.++++.+..|.++++|++|+|++|.++..... .+.++
T Consensus 72 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-------~~~~l 144 (680)
T 1ziw_A 72 LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG-------TQVQL 144 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC-------SSSCC
T ss_pred ccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCch-------hhccc
Confidence 34444445544444433333444555555555555555444444455555555555555544443322 24455
Q ss_pred CCCcEEEccCCCCcccCChhhhhc-ccccceEEecCCcccccCChhhhcC---------------------------CCC
Q 005278 85 RNLTVLGLASNPLRGILPPLIGNF-SASLQEFYAYGCKLRGNIPQEIGNL---------------------------SGM 136 (704)
Q Consensus 85 ~~L~~L~L~~n~i~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l---------------------------~~L 136 (704)
++|++|+|++|++++..+..+..+ ..+|++|++++|.+++..|..+..+ ++|
T Consensus 145 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L 224 (680)
T 1ziw_A 145 ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSI 224 (680)
T ss_dssp TTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCC
T ss_pred ccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccc
Confidence 555555555555554444433321 1245555555555554444433322 233
Q ss_pred CEEEccCCcCccccChhhcCCCC--cCeeeccCcccCCCCCccccCCCCCCEEEcCCCcCCccCCcccc-----------
Q 005278 137 IVFDLNGCDLNGTIPTAVGRLRR--LQGLYLHGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLA----------- 203 (704)
Q Consensus 137 ~~L~L~~n~l~~~~~~~~~~l~~--L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~----------- 203 (704)
++|++++|.+.+..+..|..++. |+.|++++|++++..|..+..+++|++|++++|.+++..|..+.
T Consensus 225 ~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 304 (680)
T 1ziw_A 225 RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304 (680)
T ss_dssp CEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECT
T ss_pred cEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEecc
Confidence 34444444444444444444432 55555555555555555555555566666665555544444343
Q ss_pred ----------------------CcCCCCEEEecCccCCCCCCCcccCCccccEEEecCcccCC--CCCcccccC--cCCc
Q 005278 204 ----------------------SLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLNG--SLPSNIQNL--KVLT 257 (704)
Q Consensus 204 ----------------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~--~~~~~~~~l--~~L~ 257 (704)
.+++|+.|++++|.+++..+..|..+++|++|++++|.+.. .....|..+ ++|+
T Consensus 305 ~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~ 384 (680)
T 1ziw_A 305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLH 384 (680)
T ss_dssp TCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCC
T ss_pred chhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCc
Confidence 34444555555555554444445555555555554443221 111111111 2455
Q ss_pred EEEeecCccCCCCCCCcCCCCCcceeeccCceeeccCC-cccccccccceEEecccCCCCCCCCCcccccccCcccccCC
Q 005278 258 NLDLSRNQLSGDIPTTIGGLENLETLSLADNQFQGPVP-KSFGSLISLESLDLSRNNLSGEIPKNFSAQSFLSNYALCGP 336 (704)
Q Consensus 258 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~l~g~ 336 (704)
.|++++|++++..|..+..+++|+.|++++|++++.+| ..+..+++|+.|++++|++.+..+..|...+.+....+.++
T Consensus 385 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n 464 (680)
T 1ziw_A 385 ILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRV 464 (680)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTS
T ss_pred eEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccc
Confidence 55555566666666777778888888888888776555 56777777888888888777666666665555555544443
No 273
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=1.1e-33 Score=294.09 Aligned_cols=289 Identities=23% Similarity=0.306 Sum_probs=253.6
Q ss_pred CCCEEecCCCcCcccCCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccCCCCCC
Q 005278 7 NLKYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTNCRN 86 (704)
Q Consensus 7 ~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~l~~ 86 (704)
+++.++++++.++ .+|..+. ++|+.|+|++|.++++.+..|.++++|++|+|++|.++.+.... |.++++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-------~~~l~~ 101 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA-------FAPLVK 101 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT-------TTTCTT
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHH-------hcCCCC
Confidence 6899999999999 6777654 78999999999999998889999999999999999998875444 899999
Q ss_pred CcEEEccCCCCcccCChhhhhcccccceEEecCCcccccCChhhhcCCCCCEEEccCCcCcc--ccChhhcCCCCcCeee
Q 005278 87 LTVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNG--TIPTAVGRLRRLQGLY 164 (704)
Q Consensus 87 L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~ 164 (704)
|++|+|++|+++. +|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+.. ..+..|..+++|++|+
T Consensus 102 L~~L~Ls~n~l~~-l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ 177 (330)
T 1xku_A 102 LERLYLSKNQLKE-LPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 177 (330)
T ss_dssp CCEEECCSSCCSB-CCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEE
T ss_pred CCEEECCCCcCCc-cChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEE
Confidence 9999999999984 454443 579999999999998888899999999999999999963 6788899999999999
Q ss_pred ccCcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCcccCC
Q 005278 165 LHGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLNG 244 (704)
Q Consensus 165 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 244 (704)
+++|+++ .+|..+. ++|++|++++|++++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.++
T Consensus 178 l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~- 253 (330)
T 1xku_A 178 IADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV- 253 (330)
T ss_dssp CCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-
T ss_pred CCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-
Confidence 9999999 5666554 89999999999999888889999999999999999999888889999999999999999999
Q ss_pred CCCcccccCcCCcEEEeecCccCCCCCCCcCC------CCCcceeeccCceeec--cCCcccccccccceEEecccC
Q 005278 245 SLPSNIQNLKVLTNLDLSRNQLSGDIPTTIGG------LENLETLSLADNQFQG--PVPKSFGSLISLESLDLSRNN 313 (704)
Q Consensus 245 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~l~~N~ 313 (704)
.+|..+..+++|+.|++++|++++..+..|.. .+.|+.|++++|.+.. ..|..|..+.+++.+++++|+
T Consensus 254 ~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 254 KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 78888999999999999999999777777754 3788999999999864 567889999999999999985
No 274
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.8e-34 Score=305.90 Aligned_cols=308 Identities=19% Similarity=0.180 Sum_probs=261.0
Q ss_pred CCCCCCEEecCCCcCcccCCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccCCC
Q 005278 4 MLPNLKYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTN 83 (704)
Q Consensus 4 ~l~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~ 83 (704)
.+++++.|++++|.++...+..|.++++|++|+|++|.++++.+..|.++++|++|+|++|.++..+... |.+
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-------~~~ 115 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV-------FQN 115 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT-------TTT
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHH-------hcC
Confidence 4689999999999999655556899999999999999999998899999999999999999998876544 899
Q ss_pred CCCCcEEEccCCCCcccCChhhhhcccccceEEecCCcccccCChhhhcCCCCCEEEccCCcCccccChhhcCCCCcCee
Q 005278 84 CRNLTVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNGTIPTAVGRLRRLQGL 163 (704)
Q Consensus 84 l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 163 (704)
+++|++|+|++|++....+..|..+ ++|++|++++|.+.+..+..+.++++|++|++++|.+++. .+..+++|+.|
T Consensus 116 l~~L~~L~L~~n~l~~l~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L 191 (390)
T 3o6n_A 116 VPLLTVLVLERNDLSSLPRGIFHNT-PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHA 191 (390)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEE
T ss_pred CCCCCEEECCCCccCcCCHHHhcCC-CCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---cccccccccee
Confidence 9999999999999996555555665 4799999999999998899999999999999999999855 36678999999
Q ss_pred eccCcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCcccC
Q 005278 164 YLHGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLN 243 (704)
Q Consensus 164 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 243 (704)
++++|.+++ +...++|++|++++|.++.. |.. ..++|+.|++++|.+++. ..+..+++|++|++++|.+.
T Consensus 192 ~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~ 261 (390)
T 3o6n_A 192 NVSYNLLST-----LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELE 261 (390)
T ss_dssp ECCSSCCSE-----EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred ecccccccc-----cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCC
Confidence 999999873 23446899999999999854 332 247899999999999854 67888999999999999999
Q ss_pred CCCCcccccCcCCcEEEeecCccCCCCCCCcCCCCCcceeeccCceeeccCCcccccccccceEEecccCCCCCCCCCcc
Q 005278 244 GSLPSNIQNLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSLADNQFQGPVPKSFGSLISLESLDLSRNNLSGEIPKNFS 323 (704)
Q Consensus 244 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~ 323 (704)
+..|..+..+++|+.|++++|+++ .+|..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|+++... +.
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~---~~ 336 (390)
T 3o6n_A 262 KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LS 336 (390)
T ss_dssp EEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CC
T ss_pred CcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC---ch
Confidence 888899999999999999999998 56777788999999999999998 67778888999999999999998653 34
Q ss_pred cccccCcccccCCC
Q 005278 324 AQSFLSNYALCGPA 337 (704)
Q Consensus 324 ~~~~l~~~~l~g~~ 337 (704)
..+.+....+.|++
T Consensus 337 ~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 337 THHTLKNLTLSHND 350 (390)
T ss_dssp TTCCCSEEECCSSC
T ss_pred hhccCCEEEcCCCC
Confidence 44455666666665
No 275
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=7e-34 Score=298.01 Aligned_cols=303 Identities=23% Similarity=0.373 Sum_probs=262.1
Q ss_pred CCCCCCEEecCCCcCcccCCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccCCC
Q 005278 4 MLPNLKYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTN 83 (704)
Q Consensus 4 ~l~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~ 83 (704)
.+++|+.|++++|.++. ++ .+..+++|++|++++|.++++.+ |.++++|++|++++|.++.++ .+.+
T Consensus 42 ~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~---------~~~~ 108 (347)
T 4fmz_A 42 ELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS---------ALQN 108 (347)
T ss_dssp HHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG---------GGTT
T ss_pred hcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch---------HHcC
Confidence 57899999999999984 45 49999999999999999997655 999999999999999998753 2889
Q ss_pred CCCCcEEEccCCCCcccCChhhhhcccccceEEecCCcccccCChhhhcCCCCCEEEccCCcCccccChhhcCCCCcCee
Q 005278 84 CRNLTVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNGTIPTAVGRLRRLQGL 163 (704)
Q Consensus 84 l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 163 (704)
+++|++|+|++|++.+..+ +..+ ++|++|++++|.....++ .+..+++|++|++++|.+....+ +..+++|++|
T Consensus 109 l~~L~~L~l~~n~i~~~~~--~~~l-~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L 182 (347)
T 4fmz_A 109 LTNLRELYLNEDNISDISP--LANL-TKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSL 182 (347)
T ss_dssp CTTCSEEECTTSCCCCCGG--GTTC-TTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEE
T ss_pred CCcCCEEECcCCcccCchh--hccC-CceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEE
Confidence 9999999999999996544 5555 479999999997765544 49999999999999999985544 8899999999
Q ss_pred eccCcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCcccC
Q 005278 164 YLHGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLN 243 (704)
Q Consensus 164 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 243 (704)
++++|++++. +. +..+++|+.|++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|.++
T Consensus 183 ~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 256 (347)
T 4fmz_A 183 SLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQIS 256 (347)
T ss_dssp ECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EccCCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccC
Confidence 9999999854 33 8889999999999999995544 8899999999999999986544 889999999999999998
Q ss_pred CCCCcccccCcCCcEEEeecCccCCCCCCCcCCCCCcceeeccCceeeccCCcccccccccceEEecccCCCCCCCCCcc
Q 005278 244 GSLPSNIQNLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSLADNQFQGPVPKSFGSLISLESLDLSRNNLSGEIPKNFS 323 (704)
Q Consensus 244 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~ 323 (704)
+. ..+..+++|+.|++++|++++. ..+..+++|+.|++++|++++..|..+..+++|+.|++++|++++..| +.
T Consensus 257 ~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~ 330 (347)
T 4fmz_A 257 DI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LA 330 (347)
T ss_dssp CC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GG
T ss_pred CC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hh
Confidence 53 5788999999999999999854 458899999999999999999999999999999999999999998766 66
Q ss_pred cccccCcccccCCC
Q 005278 324 AQSFLSNYALCGPA 337 (704)
Q Consensus 324 ~~~~l~~~~l~g~~ 337 (704)
..+.+....+.+++
T Consensus 331 ~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 331 SLSKMDSADFANQV 344 (347)
T ss_dssp GCTTCSEESSSCC-
T ss_pred hhhccceeehhhhc
Confidence 66667777776664
No 276
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=6.2e-34 Score=296.20 Aligned_cols=288 Identities=26% Similarity=0.341 Sum_probs=250.3
Q ss_pred CCCEEecCCCcCcccCCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccCCCCCC
Q 005278 7 NLKYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTNCRN 86 (704)
Q Consensus 7 ~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~l~~ 86 (704)
+++.++++++.++ .+|..+. ++|+.|+|++|.++++.+..|.++++|++|+|++|.++.+.... |.++++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-------~~~l~~ 103 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKA-------FSPLRK 103 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG-------STTCTT
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhH-------hhCcCC
Confidence 6899999999998 6787664 79999999999999998999999999999999999998765444 899999
Q ss_pred CcEEEccCCCCcccCChhhhhcccccceEEecCCcccccCChhhhcCCCCCEEEccCCcCc--cccChhhcCCCCcCeee
Q 005278 87 LTVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLN--GTIPTAVGRLRRLQGLY 164 (704)
Q Consensus 87 L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~ 164 (704)
|++|+|++|++. .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.++ +..+..+..+ +|+.|+
T Consensus 104 L~~L~L~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~ 178 (332)
T 2ft3_A 104 LQKLYISKNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLR 178 (332)
T ss_dssp CCEEECCSSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCB
T ss_pred CCEEECCCCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEE
Confidence 999999999998 4454443 57999999999999888888999999999999999996 3677888888 999999
Q ss_pred ccCcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCcccCC
Q 005278 165 LHGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLNG 244 (704)
Q Consensus 165 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 244 (704)
+++|++++ +|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.++
T Consensus 179 l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~- 254 (332)
T 2ft3_A 179 ISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS- 254 (332)
T ss_dssp CCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-
T ss_pred CcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-
Confidence 99999994 666654 78999999999999877788999999999999999999888888999999999999999998
Q ss_pred CCCcccccCcCCcEEEeecCccCCCCCCCcCC------CCCcceeeccCceee--ccCCcccccccccceEEecccC
Q 005278 245 SLPSNIQNLKVLTNLDLSRNQLSGDIPTTIGG------LENLETLSLADNQFQ--GPVPKSFGSLISLESLDLSRNN 313 (704)
Q Consensus 245 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~L~L~~n~l~--~~~p~~~~~l~~L~~L~l~~N~ 313 (704)
.+|..+..+++|+.|++++|++++..+..|.. ..+|+.|++++|++. +..|..|..+++|+.+++++|+
T Consensus 255 ~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 255 RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 78888999999999999999999776666665 367899999999987 6778889999999999999885
No 277
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=100.00 E-value=6.1e-36 Score=320.17 Aligned_cols=240 Identities=18% Similarity=0.157 Sum_probs=179.1
Q ss_pred hCCCCccccccccCceEEEEEEE-CCCCEEEEEEeeccc---hhhhHHHHHHHHHHHhcCC-CCCc--------------
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTL-FDGTNVAIKVFNLQL---ERASRSFDSECEILRSIRH-RNLI-------------- 474 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h-~niv-------------- 474 (704)
...|...+.||+|+||+||+|+. .+|+.||||++.... ....+.+.+|+.+++.++| +|..
T Consensus 77 ~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 156 (413)
T 3dzo_A 77 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL 156 (413)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEE
T ss_pred ceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhh
Confidence 34567778999999999999995 479999999987432 2235779999999999987 2211
Q ss_pred -------eEEeeeee-----CCeEEEEEeccCCCCHHHHHh------hCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 005278 475 -------KIISNCCN-----IDFKALVLEFMPNGSLEKWLY------SHNYFLGILERLNIMIDVGLALEYLHHGHSTPM 536 (704)
Q Consensus 475 -------~l~~~~~~-----~~~~~lv~e~~~~gsL~~~l~------~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~i 536 (704)
.++.++.. ....+++|+++ +++|.+++. .....+++..++.++.|++.||+||| +.+|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~i 232 (413)
T 3dzo_A 157 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLH---HYGL 232 (413)
T ss_dssp EECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHH---HTTE
T ss_pred cccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHH---hCCc
Confidence 11111111 22356677765 679999985 23455788899999999999999995 5789
Q ss_pred EecCCCCCCeeeCCCCcEEEeeeccceecCCCCCcceeccccccccccCCccc----------CCCCCCcccceeeHHHH
Q 005278 537 VHCDLKPNNILLDENMTAHVSDFGISKLLGEGDDSVIQTMTIATIGYMAPEYG----------SEGIISPKSDVYSYGIL 606 (704)
Q Consensus 537 vH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~----------~~~~~~~~~Dv~s~Gv~ 606 (704)
+||||||+||+++.++.+||+|||+++..... .....| +.|+|||++ .+..++.++|||||||+
T Consensus 233 iHrDiKp~NILl~~~~~~kL~DFG~a~~~~~~-----~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvi 306 (413)
T 3dzo_A 233 VHTYLRPVDIVLDQRGGVFLTGFEHLVRDGAS-----AVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLA 306 (413)
T ss_dssp ECSCCCGGGEEECTTCCEEECCGGGCEETTEE-----ECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHH
T ss_pred ccCCcccceEEEecCCeEEEEeccceeecCCc-----cccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHH
Confidence 99999999999999999999999999875322 334467 999999998 66678899999999999
Q ss_pred HHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHH
Q 005278 607 LMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAA 686 (704)
Q Consensus 607 l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~ 686 (704)
+|||+||+.||......+. ...+.. ....++..+.+++.+||+.||++||++.|++
T Consensus 307 l~elltg~~Pf~~~~~~~~-------------~~~~~~-----------~~~~~~~~~~~li~~~l~~dP~~Rpt~~~~l 362 (413)
T 3dzo_A 307 IYWIWCADLPNTDDAALGG-------------SEWIFR-----------SCKNIPQPVRALLEGFLRYPKEDRLLPLQAM 362 (413)
T ss_dssp HHHHHHSSCCCCTTGGGSC-------------SGGGGS-----------SCCCCCHHHHHHHHHHTCSSGGGSCCHHHHT
T ss_pred HHHHHHCCCCCCCcchhhh-------------HHHHHh-----------hcccCCHHHHHHHHHHccCChhhCcCHHHHH
Confidence 9999999999976322110 011100 0112346788999999999999999988885
Q ss_pred H
Q 005278 687 A 687 (704)
Q Consensus 687 ~ 687 (704)
+
T Consensus 363 ~ 363 (413)
T 3dzo_A 363 E 363 (413)
T ss_dssp T
T ss_pred h
Confidence 4
No 278
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.5e-33 Score=320.62 Aligned_cols=325 Identities=24% Similarity=0.237 Sum_probs=259.2
Q ss_pred CCCCEEecCCCcCcccCCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccCCCCC
Q 005278 6 PNLKYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTNCR 85 (704)
Q Consensus 6 ~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~l~ 85 (704)
+++++|||++|+|+++.+.+|.++++|++|+|++|.|+++.+++|.++++|++|+|++|+|+.++..+ |.+++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~-------f~~L~ 124 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA-------FSGLS 124 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGG-------GTTCT
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHH-------hcCCC
Confidence 37999999999999877889999999999999999999999999999999999999999998877655 89999
Q ss_pred CCcEEEccCCCCcccCChhhhhcccccceEEecCCcccc-cCChhhhcCCCCCEEEccCCcCccccChhhcCC-------
Q 005278 86 NLTVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRG-NIPQEIGNLSGMIVFDLNGCDLNGTIPTAVGRL------- 157 (704)
Q Consensus 86 ~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l------- 157 (704)
+|++|+|++|++++..+..|..+. +|++|+|++|.+++ ..|..++.+++|++|+|++|.+++..+..|..+
T Consensus 125 ~L~~L~Ls~N~l~~l~~~~~~~L~-~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~ 203 (635)
T 4g8a_A 125 SLQKLVAVETNLASLENFPIGHLK-TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 203 (635)
T ss_dssp TCCEEECTTSCCCCSTTCCCTTCT-TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred CCCEEECCCCcCCCCChhhhhcCc-ccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhh
Confidence 999999999999987777787774 79999999999976 467888999999999999998875544433211
Q ss_pred --------------------------------------------------------------------------------
Q 005278 158 -------------------------------------------------------------------------------- 157 (704)
Q Consensus 158 -------------------------------------------------------------------------------- 157 (704)
T Consensus 204 ~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~ 283 (635)
T 4g8a_A 204 LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 283 (635)
T ss_dssp CEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEE
T ss_pred hhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhh
Confidence
Q ss_pred --------------------------------------------CCcCeeeccCcccCCCCC------------------
Q 005278 158 --------------------------------------------RRLQGLYLHGNKLQGSIP------------------ 175 (704)
Q Consensus 158 --------------------------------------------~~L~~L~L~~n~l~~~~~------------------ 175 (704)
..|+.|++.+|.+....+
T Consensus 284 ~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~ 363 (635)
T 4g8a_A 284 EEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN 363 (635)
T ss_dssp EEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCC
T ss_pred hhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCC
Confidence 122333333333321111
Q ss_pred -ccccCCCCCCEEEcCCCcCCc-------------------------------------------------c-CCccccC
Q 005278 176 -YDLCHLEGLSELNLNGNKLCG-------------------------------------------------H-VPPCLAS 204 (704)
Q Consensus 176 -~~l~~l~~L~~L~L~~n~l~~-------------------------------------------------~-~~~~~~~ 204 (704)
.....+++|+.|++++|.+.. . .+..+..
T Consensus 364 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~ 443 (635)
T 4g8a_A 364 AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 443 (635)
T ss_dssp BCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTT
T ss_pred Ccccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccc
Confidence 011234566777777666531 1 1123556
Q ss_pred cCCCCEEEecCccCCCCCCCcccCCccccEEEecCcccC-CCCCcccccCcCCcEEEeecCccCCCCCCCcCCCCCccee
Q 005278 205 LTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLN-GSLPSNIQNLKVLTNLDLSRNQLSGDIPTTIGGLENLETL 283 (704)
Q Consensus 205 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 283 (704)
+++++.+++++|.+.+..+..+..+++|+.|++++|.+. ...|..|..+++|+.|+|++|++++..|..|.++++|+.|
T Consensus 444 l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L 523 (635)
T 4g8a_A 444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 523 (635)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred ccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEE
Confidence 677778888888888777888888999999999999754 4678889999999999999999998889999999999999
Q ss_pred eccCceeeccCCcccccccccceEEecccCCCCCCCCCcccc-cccCcccccCCCc
Q 005278 284 SLADNQFQGPVPKSFGSLISLESLDLSRNNLSGEIPKNFSAQ-SFLSNYALCGPAR 338 (704)
Q Consensus 284 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~-~~l~~~~l~g~~~ 338 (704)
+|++|+|++..|..|..+++|+.|+|++|++++..|..+... +.+....+.|+|.
T Consensus 524 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~ 579 (635)
T 4g8a_A 524 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 579 (635)
T ss_dssp ECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCB
T ss_pred ECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCC
Confidence 999999998888899999999999999999999999888776 4677778888774
No 279
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=5.5e-34 Score=303.66 Aligned_cols=288 Identities=22% Similarity=0.231 Sum_probs=257.2
Q ss_pred CCCCCCEEecCCCcCcccCCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccCCC
Q 005278 4 MLPNLKYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTN 83 (704)
Q Consensus 4 ~l~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~ 83 (704)
.+++|++|+|++|.+++..+..|.++++|++|+|++|.++++.+..|.++++|++|+|++|.++.++... |.+
T Consensus 67 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~-------~~~ 139 (390)
T 3o6n_A 67 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI-------FHN 139 (390)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-------TTT
T ss_pred ccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHH-------hcC
Confidence 5799999999999999888889999999999999999999999999999999999999999999876554 789
Q ss_pred CCCCcEEEccCCCCcccCChhhhhcccccceEEecCCcccccCChhhhcCCCCCEEEccCCcCccccChhhcCCCCcCee
Q 005278 84 CRNLTVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNGTIPTAVGRLRRLQGL 163 (704)
Q Consensus 84 l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 163 (704)
+++|++|+|++|++.+..+..+..+. +|++|++++|.+++. .+..+++|++|++++|.+.. +...++|++|
T Consensus 140 l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L 210 (390)
T 3o6n_A 140 TPKLTTLSMSNNNLERIEDDTFQATT-SLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEEL 210 (390)
T ss_dssp CTTCCEEECCSSCCCBCCTTTTSSCT-TCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCSSCSEE
T ss_pred CCCCcEEECCCCccCccChhhccCCC-CCCEEECCCCcCCcc---ccccccccceeecccccccc-----cCCCCcceEE
Confidence 99999999999999988888888764 799999999999865 36788999999999999884 3445789999
Q ss_pred eccCcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCcccC
Q 005278 164 YLHGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLN 243 (704)
Q Consensus 164 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 243 (704)
++++|.++.. |... .++|+.|++++|.+++. ..+..+++|+.|++++|.+++..+..|..+++|++|++++|.++
T Consensus 211 ~l~~n~l~~~-~~~~--~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 285 (390)
T 3o6n_A 211 DASHNSINVV-RGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 285 (390)
T ss_dssp ECCSSCCCEE-ECCC--CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC
T ss_pred ECCCCeeeec-cccc--cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc
Confidence 9999999844 4333 47999999999999954 57899999999999999999888999999999999999999998
Q ss_pred CCCCcccccCcCCcEEEeecCccCCCCCCCcCCCCCcceeeccCceeeccCCcccccccccceEEecccCCCCC
Q 005278 244 GSLPSNIQNLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSLADNQFQGPVPKSFGSLISLESLDLSRNNLSGE 317 (704)
Q Consensus 244 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 317 (704)
+ ++..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|++++ ++ +..+++|+.|++++|++.+.
T Consensus 286 ~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~-~~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 286 A-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp E-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCEEHH
T ss_pred c-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccce-eC--chhhccCCEEEcCCCCccch
Confidence 4 5666788999999999999999 678788999999999999999985 43 77889999999999999863
No 280
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=100.00 E-value=1.1e-34 Score=297.09 Aligned_cols=230 Identities=20% Similarity=0.258 Sum_probs=178.4
Q ss_pred hCCCCcc-ccccccCceEEEEEEE-CCCCEEEEEEeeccchhhhHHHHHHHHHH-HhcCCCCCceEEeeeee----CCeE
Q 005278 414 TNGFNEC-NLLGTGSFGSVYKGTL-FDGTNVAIKVFNLQLERASRSFDSECEIL-RSIRHRNLIKIISNCCN----IDFK 486 (704)
Q Consensus 414 ~~~~~~~-~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l-~~l~h~niv~l~~~~~~----~~~~ 486 (704)
.++|.+. +.||+|+||.||+|.. .+++.||+|++.. ...+.+|+.++ +..+||||+++++++.. ....
T Consensus 16 ~~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~-----~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~ 90 (299)
T 3m2w_A 16 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCL 90 (299)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred ccchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecc-----cHHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceE
Confidence 3567776 7799999999999986 4789999999863 34567888888 55699999999999877 6678
Q ss_pred EEEEeccCCCCHHHHHhhCC-CccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCC---CCcEEEeeeccc
Q 005278 487 ALVLEFMPNGSLEKWLYSHN-YFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDE---NMTAHVSDFGIS 562 (704)
Q Consensus 487 ~lv~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~---~~~~kl~Dfgla 562 (704)
++||||+++|+|.+++.... ..+++..+..++.|++.||+||| +.+|+||||||+||+++. ++.+||+|||++
T Consensus 91 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a 167 (299)
T 3m2w_A 91 LIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLH---SINIAHRDVKPENLLYTSKRPNAILKLTDFGFA 167 (299)
T ss_dssp EEEECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESSSSTTCCEEECCCTTC
T ss_pred EEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEEecCCCCCcEEEeccccc
Confidence 99999999999999998653 46899999999999999999995 478999999999999998 789999999998
Q ss_pred eecCCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccccccHHHHHHhhcCCCcchh
Q 005278 563 KLLGEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEV 642 (704)
Q Consensus 563 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (704)
.... +..++.++|||||||++|||++|+.||........ . .......
T Consensus 168 ~~~~------------------------~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~------~---~~~~~~~ 214 (299)
T 3m2w_A 168 KETT------------------------GEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAI------S---PGMKTRI 214 (299)
T ss_dssp EECT------------------------TCGGGGHHHHHHHHHHHHHHHHSSCSCCC----------------CCSCCSS
T ss_pred cccc------------------------cccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhh------h---HHHHHHH
Confidence 7542 13456789999999999999999999975321110 0 0000000
Q ss_pred ccccchhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 005278 643 VDANLVREEQAFSVKIDCLLSIMHLALDCCMESPEQRVSMKDAAA 687 (704)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~P~~Rpt~~ev~~ 687 (704)
...... ........++..+.+++.+||+.||++||++.|+++
T Consensus 215 ~~~~~~---~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~ 256 (299)
T 3m2w_A 215 RMGQYE---FPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMN 256 (299)
T ss_dssp CTTCCS---SCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred hhcccc---CCchhcccCCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 000000 001111245677899999999999999999999976
No 281
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=8.8e-34 Score=318.68 Aligned_cols=308 Identities=19% Similarity=0.177 Sum_probs=244.1
Q ss_pred CCCCCCEEecCCCcCcccCCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccCCC
Q 005278 4 MLPNLKYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTN 83 (704)
Q Consensus 4 ~l~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~ 83 (704)
.+++++.|++++|.++...+..|.++++|+.|+|++|.++++.+..|..+++|++|+|++|.++.++... |.+
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-------~~~ 121 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV-------FQN 121 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT-------TTT
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHH-------HcC
Confidence 4578899999999999766667888999999999999999988889999999999999999998876554 889
Q ss_pred CCCCcEEEccCCCCcccCChhhhhcccccceEEecCCcccccCChhhhcCCCCCEEEccCCcCccccChhhcCCCCcCee
Q 005278 84 CRNLTVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNGTIPTAVGRLRRLQGL 163 (704)
Q Consensus 84 l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 163 (704)
+++|++|+|++|.+....+..|..+ ++|++|+|++|.+++..|..|+++++|++|+|++|.+.+.. ++.+++|+.|
T Consensus 122 l~~L~~L~L~~n~l~~l~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L 197 (597)
T 3oja_B 122 VPLLTVLVLERNDLSSLPRGIFHNT-PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHA 197 (597)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEE
T ss_pred CCCCCEEEeeCCCCCCCCHHHhccC-CCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhh
Confidence 9999999999999996666556666 47999999999999999989999999999999999998653 5667888888
Q ss_pred eccCcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCcccC
Q 005278 164 YLHGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLN 243 (704)
Q Consensus 164 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 243 (704)
++++|.+++ +...++|+.|++++|.++...+ .+ .++|+.|+|++|.+++ +..+..+++|+.|+|++|.+.
T Consensus 198 ~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~-~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~ 267 (597)
T 3oja_B 198 NVSYNLLST-----LAIPIAVEELDASHNSINVVRG-PV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE 267 (597)
T ss_dssp ECCSSCCSE-----EECCTTCSEEECCSSCCCEEEC-SC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCC
T ss_pred hcccCcccc-----ccCCchhheeeccCCccccccc-cc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccC
Confidence 888888873 2344678888888888874332 22 2578888888888875 366778888888888888888
Q ss_pred CCCCcccccCcCCcEEEeecCccCCCCCCCcCCCCCcceeeccCceeeccCCcccccccccceEEecccCCCCCCCCCcc
Q 005278 244 GSLPSNIQNLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSLADNQFQGPVPKSFGSLISLESLDLSRNNLSGEIPKNFS 323 (704)
Q Consensus 244 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~ 323 (704)
+..|..|+.+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|++++.. +.
T Consensus 268 ~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~ 342 (597)
T 3oja_B 268 KIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LS 342 (597)
T ss_dssp EEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CC
T ss_pred CCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hh
Confidence 7778888888888888888888874 5666677888888888888887 57777778888888888888887553 23
Q ss_pred cccccCcccccCCC
Q 005278 324 AQSFLSNYALCGPA 337 (704)
Q Consensus 324 ~~~~l~~~~l~g~~ 337 (704)
..+.+....+.|++
T Consensus 343 ~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 343 THHTLKNLTLSHND 356 (597)
T ss_dssp TTCCCSEEECCSSC
T ss_pred hcCCCCEEEeeCCC
Confidence 33344555555554
No 282
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=5.8e-34 Score=320.14 Aligned_cols=289 Identities=22% Similarity=0.216 Sum_probs=259.3
Q ss_pred CCCCCCEEecCCCcCcccCCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccCCC
Q 005278 4 MLPNLKYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTN 83 (704)
Q Consensus 4 ~l~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~ 83 (704)
.+++|+.|+|++|.+++..|..|.++++|++|+|++|.++++.+..|+++++|++|+|++|.++.++... |.+
T Consensus 73 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~-------~~~ 145 (597)
T 3oja_B 73 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI-------FHN 145 (597)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-------TTT
T ss_pred cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHH-------hcc
Confidence 5789999999999999888889999999999999999999999999999999999999999999876554 799
Q ss_pred CCCCcEEEccCCCCcccCChhhhhcccccceEEecCCcccccCChhhhcCCCCCEEEccCCcCccccChhhcCCCCcCee
Q 005278 84 CRNLTVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNGTIPTAVGRLRRLQGL 163 (704)
Q Consensus 84 l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 163 (704)
+++|++|+|++|.+.+..|..|..+. +|++|++++|.+++.. ++.+++|+.|++++|.+.+ +...++|+.|
T Consensus 146 l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L 216 (597)
T 3oja_B 146 TPKLTTLSMSNNNLERIEDDTFQATT-SLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST-----LAIPIAVEEL 216 (597)
T ss_dssp CTTCCEEECCSSCCCBCCTTTTTTCT-TCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE-----EECCTTCSEE
T ss_pred CCCCCEEEeeCCcCCCCChhhhhcCC-cCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc-----ccCCchhhee
Confidence 99999999999999998888888874 7999999999999753 6778999999999999884 3456789999
Q ss_pred eccCcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCcccC
Q 005278 164 YLHGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLN 243 (704)
Q Consensus 164 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 243 (704)
++++|.++.. +..+ .++|+.|+|++|.+++ +..+..+++|+.|+|++|.+++..|..|+.+++|+.|+|++|.++
T Consensus 217 ~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 291 (597)
T 3oja_B 217 DASHNSINVV-RGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 291 (597)
T ss_dssp ECCSSCCCEE-ECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC
T ss_pred eccCCccccc-cccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC
Confidence 9999999843 3333 3689999999999996 367899999999999999999999999999999999999999998
Q ss_pred CCCCcccccCcCCcEEEeecCccCCCCCCCcCCCCCcceeeccCceeeccCCcccccccccceEEecccCCCCCC
Q 005278 244 GSLPSNIQNLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSLADNQFQGPVPKSFGSLISLESLDLSRNNLSGEI 318 (704)
Q Consensus 244 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 318 (704)
+ +|..+..+++|+.|+|++|+++ .+|..+..+++|+.|+|++|.+++. | +..+++|+.|++++|++.+..
T Consensus 292 ~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 292 A-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp E-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHH
T ss_pred C-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChh
Confidence 5 5777788999999999999999 7888899999999999999999854 3 678899999999999998643
No 283
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3e-33 Score=293.23 Aligned_cols=284 Identities=27% Similarity=0.417 Sum_probs=247.9
Q ss_pred CCCCCCCEEecCCCcCcccCCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccCC
Q 005278 3 YMLPNLKYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLT 82 (704)
Q Consensus 3 ~~l~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~ 82 (704)
..+++|++|++++|.+++. +. +.++++|++|+|++|.++++ ..|.++++|++|++++|.+...+. +.
T Consensus 63 ~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~~~---------~~ 129 (347)
T 4fmz_A 63 EYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDISP---------LA 129 (347)
T ss_dssp GGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCCGG---------GT
T ss_pred hhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCchh---------hc
Confidence 3589999999999999954 44 99999999999999999975 469999999999999999987542 78
Q ss_pred CCCCCcEEEccCCCCcccCChhhhhcccccceEEecCCcccccCChhhhcCCCCCEEEccCCcCccccChhhcCCCCcCe
Q 005278 83 NCRNLTVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNGTIPTAVGRLRRLQG 162 (704)
Q Consensus 83 ~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 162 (704)
.+++|++|++++|......+. +..+ ++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.
T Consensus 130 ~l~~L~~L~l~~n~~~~~~~~-~~~l-~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 203 (347)
T 4fmz_A 130 NLTKMYSLNLGANHNLSDLSP-LSNM-TGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHY 203 (347)
T ss_dssp TCTTCCEEECTTCTTCCCCGG-GTTC-TTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCE
T ss_pred cCCceeEEECCCCCCcccccc-hhhC-CCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccce
Confidence 999999999999976655443 6655 479999999999986554 8999999999999999985443 889999999
Q ss_pred eeccCcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCccc
Q 005278 163 LYLHGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSL 242 (704)
Q Consensus 163 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 242 (704)
|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|.+++. ..+..+++|++|++++|.+
T Consensus 204 L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l 277 (347)
T 4fmz_A 204 FTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQI 277 (347)
T ss_dssp EECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred eecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCcc
Confidence 9999999995543 8889999999999999995433 88999999999999999864 5788999999999999999
Q ss_pred CCCCCcccccCcCCcEEEeecCccCCCCCCCcCCCCCcceeeccCceeeccCCcccccccccceEEecccCCC
Q 005278 243 NGSLPSNIQNLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSLADNQFQGPVPKSFGSLISLESLDLSRNNLS 315 (704)
Q Consensus 243 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 315 (704)
++. ..+..+++|+.|++++|++++..+..++.+++|+.|++++|++++..| +..+++|+.|++++|+++
T Consensus 278 ~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 278 SDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 864 568899999999999999998888889999999999999999997666 889999999999999986
No 284
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4.3e-34 Score=319.12 Aligned_cols=277 Identities=23% Similarity=0.271 Sum_probs=179.4
Q ss_pred CCCCCEEecCCCcCcccCCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccCCCC
Q 005278 5 LPNLKYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTNC 84 (704)
Q Consensus 5 l~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~l 84 (704)
+++|++|+|++|.+++..|..|.++++|++|+|++|.++++.+.+|.++++|++|+|++|.++..+... |.++
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-------~~~l 97 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSW-------FGPL 97 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHH-------HTTC
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHH-------hccC
Confidence 356777777777777766777777777777777777777777777777777777777777777655443 6677
Q ss_pred CCCcEEEccCCCCccc-CChhhhhcccccceEEecCCc-ccccCChhhhcCCCCCEEEccCCcCccccChhhcC------
Q 005278 85 RNLTVLGLASNPLRGI-LPPLIGNFSASLQEFYAYGCK-LRGNIPQEIGNLSGMIVFDLNGCDLNGTIPTAVGR------ 156 (704)
Q Consensus 85 ~~L~~L~L~~n~i~~~-~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------ 156 (704)
++|++|+|++|++.+. .|..+..+ ++|++|++++|. +....+..+.++++|++|++++|.+.+..|..++.
T Consensus 98 ~~L~~L~Ls~n~l~~~~~~~~~~~l-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 176 (549)
T 2z81_A 98 SSLKYLNLMGNPYQTLGVTSLFPNL-TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHH 176 (549)
T ss_dssp TTCCEEECTTCCCSSSCSSCSCTTC-TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred CCCcEEECCCCcccccchhhhhhcc-CCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCce
Confidence 7777777777777653 34455554 357777777776 33333456677777777777777776666655544
Q ss_pred ------------------CCCcCeeeccCcccCCCC--Ccc-ccCC----------------------------------
Q 005278 157 ------------------LRRLQGLYLHGNKLQGSI--PYD-LCHL---------------------------------- 181 (704)
Q Consensus 157 ------------------l~~L~~L~L~~n~l~~~~--~~~-l~~l---------------------------------- 181 (704)
+++|++|++++|++++.. |.. ...+
T Consensus 177 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l 256 (549)
T 2z81_A 177 LTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV 256 (549)
T ss_dssp EEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEE
T ss_pred EecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccc
Confidence 566666667777666421 100 0011
Q ss_pred -----------------------------------------------------CCCCEEEcCCCcCCccCCccc-cCcCC
Q 005278 182 -----------------------------------------------------EGLSELNLNGNKLCGHVPPCL-ASLTS 207 (704)
Q Consensus 182 -----------------------------------------------------~~L~~L~L~~n~l~~~~~~~~-~~l~~ 207 (704)
++|+.|++++|+++ .+|..+ ..+++
T Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~ 335 (549)
T 2z81_A 257 EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKS 335 (549)
T ss_dssp EEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTT
T ss_pred ccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCcc
Confidence 22333444444433 233333 35677
Q ss_pred CCEEEecCccCCCCCC---CcccCCccccEEEecCcccCCCCC--cccccCcCCcEEEeecCccCCCCCCCcCCCCCcce
Q 005278 208 LRRLHLGSNKLTSTMP---SSFGSLEYVLYINLSANSLNGSLP--SNIQNLKVLTNLDLSRNQLSGDIPTTIGGLENLET 282 (704)
Q Consensus 208 L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~N~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 282 (704)
|+.|++++|.+++..+ ..++.+++|++|++++|.+++..+ ..+..+++|+.|++++|+++ .+|..+..+++|+.
T Consensus 336 L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~ 414 (549)
T 2z81_A 336 LEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRF 414 (549)
T ss_dssp CCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCE
T ss_pred ccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccE
Confidence 7777777777765442 346667777777777777764322 34677777888888888877 67777777777777
Q ss_pred eeccCceee
Q 005278 283 LSLADNQFQ 291 (704)
Q Consensus 283 L~L~~n~l~ 291 (704)
|++++|+++
T Consensus 415 L~Ls~N~l~ 423 (549)
T 2z81_A 415 LNLSSTGIR 423 (549)
T ss_dssp EECTTSCCS
T ss_pred EECCCCCcc
Confidence 777777776
No 285
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4e-33 Score=304.06 Aligned_cols=303 Identities=27% Similarity=0.420 Sum_probs=180.3
Q ss_pred CCCCCCEEecCCCcCcccCCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccCCC
Q 005278 4 MLPNLKYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTN 83 (704)
Q Consensus 4 ~l~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~ 83 (704)
.+++|++|+|++|.+++..+ +.++++|++|++++|.++++.+ |.++++|++|++++|.++..+. +.+
T Consensus 66 ~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~---------~~~ 132 (466)
T 1o6v_A 66 YLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP---------LKN 132 (466)
T ss_dssp GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG---------GTT
T ss_pred hhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH---------HcC
Confidence 46677777777777774433 7777777777777777775544 6777777777777777665431 566
Q ss_pred CCCCcEEEccCCCCcccCC-------------------hhhhhcccccceEEecCCcccccCChhhhcCCCCCEEEccCC
Q 005278 84 CRNLTVLGLASNPLRGILP-------------------PLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGC 144 (704)
Q Consensus 84 l~~L~~L~L~~n~i~~~~~-------------------~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 144 (704)
+++|++|+|++|++.+... ..+..+ ++|++|++++|.+.+. ..+..+++|++|++++|
T Consensus 133 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n 209 (466)
T 1o6v_A 133 LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANL-TTLERLDISSNKVSDI--SVLAKLTNLESLIATNN 209 (466)
T ss_dssp CTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTC-TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS
T ss_pred CCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccC-CCCCEEECcCCcCCCC--hhhccCCCCCEEEecCC
Confidence 6777777777776654311 012222 2455555555555432 23555555555555555
Q ss_pred cCccccChhhcCCCCcCeeeccCcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCC
Q 005278 145 DLNGTIPTAVGRLRRLQGLYLHGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPS 224 (704)
Q Consensus 145 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 224 (704)
.+.+..+ ++.+++|+.|++++|++++. ..+..+++|++|++++|.+++..+ +..+++|+.|++++|.+++..+
T Consensus 210 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~- 282 (466)
T 1o6v_A 210 QISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP- 282 (466)
T ss_dssp CCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG-
T ss_pred ccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc-
Confidence 5554333 45555666666666665532 245556666666666666664332 5566666666666666664332
Q ss_pred cccCCccccEEEecCcccCCCCCcccccCcCCcEEEeecCccCCCCCCCcCCCCCcceeeccCceeeccCCccccccccc
Q 005278 225 SFGSLEYVLYINLSANSLNGSLPSNIQNLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSLADNQFQGPVPKSFGSLISL 304 (704)
Q Consensus 225 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 304 (704)
+..+++|+.|++++|.+.+..+ +..+++|+.|++++|++++..| +..+++|+.|++++|++++. ..+..+++|
T Consensus 283 -~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L 355 (466)
T 1o6v_A 283 -LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNI 355 (466)
T ss_dssp -GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred -ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCC
Confidence 5666666666666666664332 5666666666666666665444 56666677777777766643 356666777
Q ss_pred ceEEecccCCCCCCCCCcccccccCcccccCCCc
Q 005278 305 ESLDLSRNNLSGEIPKNFSAQSFLSNYALCGPAR 338 (704)
Q Consensus 305 ~~L~l~~N~l~~~~p~~~~~~~~l~~~~l~g~~~ 338 (704)
+.|++++|++++..| +...+.+....+.+++.
T Consensus 356 ~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 356 NWLSAGHNQISDLTP--LANLTRITQLGLNDQAW 387 (466)
T ss_dssp CEEECCSSCCCBCGG--GTTCTTCCEEECCCEEE
T ss_pred CEEeCCCCccCccch--hhcCCCCCEEeccCCcc
Confidence 777777777766555 44445555555555443
No 286
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=100.00 E-value=1.7e-35 Score=308.59 Aligned_cols=243 Identities=19% Similarity=0.225 Sum_probs=184.7
Q ss_pred hCCCCccccccccCceEEEEEEECCCCEEEEEEeeccch--------hhhHHHHHHHHHHHhcC---------CCCCceE
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLFDGTNVAIKVFNLQLE--------RASRSFDSECEILRSIR---------HRNLIKI 476 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~--------~~~~~~~~e~~~l~~l~---------h~niv~l 476 (704)
.++|+..+.||+|+||+||+|+. +|+.||||++..... ...+.+.+|+++++.++ ||||+++
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l 97 (336)
T 2vuw_A 19 TEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGL 97 (336)
T ss_dssp HHHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCE
T ss_pred cccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhh
Confidence 35788899999999999999987 789999999975421 22367899999999886 7777777
Q ss_pred Eeeee------------------------------eCCeEEEEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHH
Q 005278 477 ISNCC------------------------------NIDFKALVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALE 526 (704)
Q Consensus 477 ~~~~~------------------------------~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~ 526 (704)
.+.+. +.+..++||||+++|++.+.+.+ ..+++..+..++.|++.||+
T Consensus 98 ~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~--~~~~~~~~~~i~~qi~~aL~ 175 (336)
T 2vuw_A 98 NSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT--KLSSLATAKSILHQLTASLA 175 (336)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT--TCCCHHHHHHHHHHHHHHHH
T ss_pred cceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh--cCCCHHHHHHHHHHHHHHHH
Confidence 77642 26789999999999977776644 34799999999999999999
Q ss_pred HHHhcCCCCcEecCCCCCCeeeCCCC--------------------cEEEeeeccceecCCCCCcceeccccccccccCC
Q 005278 527 YLHHGHSTPMVHCDLKPNNILLDENM--------------------TAHVSDFGISKLLGEGDDSVIQTMTIATIGYMAP 586 (704)
Q Consensus 527 ~Lh~~h~~~ivH~dlk~~Nil~~~~~--------------------~~kl~Dfgla~~~~~~~~~~~~~~~~gt~~y~aP 586 (704)
|||+ +.+|+||||||+|||++.++ .+||+|||+|+..... ...||+.|+||
T Consensus 176 ~lH~--~~~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~-------~~~gt~~y~aP 246 (336)
T 2vuw_A 176 VAEA--SLRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDG-------IVVFCDVSMDE 246 (336)
T ss_dssp HHHH--HHCCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETT-------EEECCCCTTCS
T ss_pred HHHH--hCCEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCC-------cEEEeecccCh
Confidence 9961 46799999999999999887 8999999999876432 34799999999
Q ss_pred cccCCCCCCcccceeeHHHH-HHHHhhCCCCCCccccccccHHHHHHhhcCCCcchhccccchhhhhhhhhhHHHHHHHH
Q 005278 587 EYGSEGIISPKSDVYSYGIL-LMETFTRKKPTNEIFIGEMSLKHWVKESLPDGLTEVVDANLVREEQAFSVKIDCLLSIM 665 (704)
Q Consensus 587 E~~~~~~~~~~~Dv~s~Gv~-l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 665 (704)
|++.+.. +.++||||+|++ .+++++|..||... .|...... .+.................++.++.
T Consensus 247 E~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~~~--------~~~~~~~~----~~~~~~~~~~~~~~~~~~~~s~~~~ 313 (336)
T 2vuw_A 247 DLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYSNV--------LWLHYLTD----KMLKQMTFKTKCNTPAMKQIKRKIQ 313 (336)
T ss_dssp GGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHHHH--------HHHHHHHH----HHHHTCCCSSCCCSHHHHHHHHHHH
T ss_pred hhhcCCC-ccceehhhhhCCCCcccccccCCCcch--------hhhhHHHH----hhhhhhccCcccchhhhhhcCHHHH
Confidence 9998766 889999998777 78899999998541 12110000 0000000000011123346788899
Q ss_pred HHHhhhcCCCCCCCCCHHHHH
Q 005278 666 HLALDCCMESPEQRVSMKDAA 686 (704)
Q Consensus 666 ~l~~~cl~~~P~~Rpt~~ev~ 686 (704)
+++.+||+.| |++|++
T Consensus 314 dli~~~L~~d-----sa~e~l 329 (336)
T 2vuw_A 314 EFHRTMLNFS-----SATDLL 329 (336)
T ss_dssp HHHHHGGGSS-----SHHHHH
T ss_pred HHHHHHhccC-----CHHHHH
Confidence 9999999976 898886
No 287
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=9.1e-34 Score=291.76 Aligned_cols=251 Identities=28% Similarity=0.451 Sum_probs=182.3
Q ss_pred CCCCEEecccccCCCcccchhhcccccCCCCCCCcEEEccC-CCCcccCChhhhhcccccceEEecCCcccccCChhhhc
Q 005278 54 GSLQVLSLAYNYLMTESSAAKWNFLSSLTNCRNLTVLGLAS-NPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGN 132 (704)
Q Consensus 54 ~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 132 (704)
.++++|+|++|.+.... .++..+.++++|++|+|++ |.+.+.+|..+..+. +|++|++++|.+++.+|..+.+
T Consensus 50 ~~l~~L~L~~~~l~~~~-----~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~ 123 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPY-----PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQ 123 (313)
T ss_dssp CCEEEEEEECCCCSSCE-----ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCT-TCSEEEEEEECCEEECCGGGGG
T ss_pred ceEEEEECCCCCccCCc-----ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCC-CCCEEECcCCeeCCcCCHHHhC
Confidence 45566666666655300 0122355666666666663 666666666665553 4666666666666666777777
Q ss_pred CCCCCEEEccCCcCccccChhhcCCCCcCeeeccCcccCCCCCccccCCC-CCCEEEcCCCcCCccCCccccCcCCCCEE
Q 005278 133 LSGMIVFDLNGCDLNGTIPTAVGRLRRLQGLYLHGNKLQGSIPYDLCHLE-GLSELNLNGNKLCGHVPPCLASLTSLRRL 211 (704)
Q Consensus 133 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 211 (704)
+++|++|+|++|.+.+.+|..|..+++|++|+|++|++++.+|..+..++ +|++|++++|++++..|..+..++ |+.|
T Consensus 124 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L 202 (313)
T 1ogq_A 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFV 202 (313)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEE
T ss_pred CCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEE
Confidence 77777777777777777777777777777777777777777777777776 777778877777777777777776 7888
Q ss_pred EecCccCCCCCCCcccCCccccEEEecCcccCCCCCcccccCcCCcEEEeecCccCCCCCCCcCCCCCcceeeccCceee
Q 005278 212 HLGSNKLTSTMPSSFGSLEYVLYINLSANSLNGSLPSNIQNLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSLADNQFQ 291 (704)
Q Consensus 212 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 291 (704)
++++|.+++..+..|..+++|+.|++++|.+.+.++. +..+++|+.|++++|++++.+|..+..+++|+.|+|++|+++
T Consensus 203 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp ECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred ECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccc
Confidence 8888877777777777778888888888887755554 677788888888888888788888888888888888888888
Q ss_pred ccCCcccccccccceEEecccC
Q 005278 292 GPVPKSFGSLISLESLDLSRNN 313 (704)
Q Consensus 292 ~~~p~~~~~l~~L~~L~l~~N~ 313 (704)
+.+|.. ..+++|+.+++++|+
T Consensus 282 ~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 282 GEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp EECCCS-TTGGGSCGGGTCSSS
T ss_pred ccCCCC-ccccccChHHhcCCC
Confidence 888776 778888888888887
No 288
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.8e-33 Score=288.07 Aligned_cols=252 Identities=25% Similarity=0.442 Sum_probs=224.5
Q ss_pred CCCCEEeccCccccc--cCchhhcCCCCCCEEeccc-ccCCCcccchhhcccccCCCCCCCcEEEccCCCCcccCChhhh
Q 005278 30 SKLIMLDLSSNSFSG--LIPNTFGNLGSLQVLSLAY-NYLMTESSAAKWNFLSSLTNCRNLTVLGLASNPLRGILPPLIG 106 (704)
Q Consensus 30 ~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~ 106 (704)
.++++|+|++|.+++ .+|..|.++++|++|+|++ |.+.... |..|.++++|++|+|++|++.+..|..+.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~-------p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 122 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPI-------PPAIAKLTQLHYLYITHTNVSGAIPDFLS 122 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCC-------CGGGGGCTTCSEEEEEEECCEEECCGGGG
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccC-------ChhHhcCCCCCEEECcCCeeCCcCCHHHh
Confidence 678888999998887 7888888899999999984 7776543 33488888999999999998888888888
Q ss_pred hcccccceEEecCCcccccCChhhhcCCCCCEEEccCCcCccccChhhcCCC-CcCeeeccCcccCCCCCccccCCCCCC
Q 005278 107 NFSASLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNGTIPTAVGRLR-RLQGLYLHGNKLQGSIPYDLCHLEGLS 185 (704)
Q Consensus 107 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~ 185 (704)
.+. +|++|++++|.+.+.+|..+.++++|++|+|++|.+++.+|..+..++ +|+.|++++|++++.+|..+..++ |+
T Consensus 123 ~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~ 200 (313)
T 1ogq_A 123 QIK-TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LA 200 (313)
T ss_dssp GCT-TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CS
T ss_pred CCC-CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-cc
Confidence 774 699999999999888999999999999999999999988999999998 999999999999988999999887 99
Q ss_pred EEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCcccCCCCCcccccCcCCcEEEeecCc
Q 005278 186 ELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLNGSLPSNIQNLKVLTNLDLSRNQ 265 (704)
Q Consensus 186 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~n~ 265 (704)
+|++++|++++..|..+..+++|+.|++++|.+++..+. +..+++|++|++++|.+++.+|..+..+++|+.|++++|+
T Consensus 201 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred EEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc
Confidence 999999999988889999999999999999999866655 7889999999999999999999999999999999999999
Q ss_pred cCCCCCCCcCCCCCcceeeccCce-eec
Q 005278 266 LSGDIPTTIGGLENLETLSLADNQ-FQG 292 (704)
Q Consensus 266 l~~~~~~~~~~l~~L~~L~L~~n~-l~~ 292 (704)
+++.+|.. +.+++|+.|++++|+ +.|
T Consensus 280 l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 280 LCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp EEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred ccccCCCC-ccccccChHHhcCCCCccC
Confidence 99988886 889999999999998 444
No 289
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=5.8e-32 Score=307.54 Aligned_cols=310 Identities=21% Similarity=0.252 Sum_probs=250.3
Q ss_pred CCCCCCCCEEecCCCcCcccCCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccC
Q 005278 2 GYMLPNLKYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSL 81 (704)
Q Consensus 2 ~~~l~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~ 81 (704)
+..+++|++|+|++|.|+++.+++|.++++|++|+|++|+++++.+.+|.++++|++|+|++|+++.++..+ |
T Consensus 72 f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~-------~ 144 (635)
T 4g8a_A 72 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP-------I 144 (635)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCC-------C
T ss_pred HhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhh-------h
Confidence 357899999999999999888889999999999999999999998899999999999999999999877554 8
Q ss_pred CCCCCCcEEEccCCCCccc-CChhhhhcccccceEEecCCcccccCChhhhcC---------------------------
Q 005278 82 TNCRNLTVLGLASNPLRGI-LPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNL--------------------------- 133 (704)
Q Consensus 82 ~~l~~L~~L~L~~n~i~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l--------------------------- 133 (704)
.++++|++|+|++|.+... .|..+..+ ++|++|++++|++++..+..+..+
T Consensus 145 ~~L~~L~~L~Ls~N~l~~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~ 223 (635)
T 4g8a_A 145 GHLKTLKELNVAHNLIQSFKLPEYFSNL-TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 223 (635)
T ss_dssp TTCTTCCEEECCSSCCCCCCCCGGGGGC-TTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTT
T ss_pred hcCcccCeeccccCccccCCCchhhccc-hhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccc
Confidence 8999999999999998764 45666665 469999999888766544433221
Q ss_pred --------------------------------------------------------------------------------
Q 005278 134 -------------------------------------------------------------------------------- 133 (704)
Q Consensus 134 -------------------------------------------------------------------------------- 133 (704)
T Consensus 224 ~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~ 303 (635)
T 4g8a_A 224 IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFN 303 (635)
T ss_dssp CEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTG
T ss_pred hhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhh
Confidence
Q ss_pred ------------------------CCCCEEEccCCcCccccCh-------------------hhcCCCCcCeeeccCccc
Q 005278 134 ------------------------SGMIVFDLNGCDLNGTIPT-------------------AVGRLRRLQGLYLHGNKL 170 (704)
Q Consensus 134 ------------------------~~L~~L~L~~n~l~~~~~~-------------------~~~~l~~L~~L~L~~n~l 170 (704)
..|+.|++.+|.+....+. ....+++|+.|+++.|.+
T Consensus 304 ~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l 383 (635)
T 4g8a_A 304 CLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGL 383 (635)
T ss_dssp GGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCC
T ss_pred hhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhcccc
Confidence 1233333333332211110 112345556666655544
Q ss_pred C-------------------------------------------------CC-CCccccCCCCCCEEEcCCCcCCccCCc
Q 005278 171 Q-------------------------------------------------GS-IPYDLCHLEGLSELNLNGNKLCGHVPP 200 (704)
Q Consensus 171 ~-------------------------------------------------~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~ 200 (704)
. .. .+..+..+++++.++++.|.+.+..+.
T Consensus 384 ~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~ 463 (635)
T 4g8a_A 384 SFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 463 (635)
T ss_dssp BEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTT
T ss_pred ccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccccccccccccc
Confidence 2 11 123466778899999999999988888
Q ss_pred cccCcCCCCEEEecCccC-CCCCCCcccCCccccEEEecCcccCCCCCcccccCcCCcEEEeecCccCCCCCCCcCCCCC
Q 005278 201 CLASLTSLRRLHLGSNKL-TSTMPSSFGSLEYVLYINLSANSLNGSLPSNIQNLKVLTNLDLSRNQLSGDIPTTIGGLEN 279 (704)
Q Consensus 201 ~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 279 (704)
.+..+++|+.|++++|.+ .+..|..|..+++|++|+|++|++++..|..|.++++|+.|+|++|+|++..+..|.++++
T Consensus 464 ~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~ 543 (635)
T 4g8a_A 464 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 543 (635)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTT
T ss_pred ccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCC
Confidence 999999999999999974 4567889999999999999999999999999999999999999999999888889999999
Q ss_pred cceeeccCceeeccCCcccccc-cccceEEecccCCCCCCC
Q 005278 280 LETLSLADNQFQGPVPKSFGSL-ISLESLDLSRNNLSGEIP 319 (704)
Q Consensus 280 L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~l~~N~l~~~~p 319 (704)
|+.|+|++|+|++..|..+..+ ++|+.|++++|++.+...
T Consensus 544 L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 544 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp CCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred CCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 9999999999999999999988 689999999999997543
No 290
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=5.9e-32 Score=294.82 Aligned_cols=292 Identities=27% Similarity=0.411 Sum_probs=250.2
Q ss_pred CCCCCCCEEecCCCcCcccCCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhh-------
Q 005278 3 YMLPNLKYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKW------- 75 (704)
Q Consensus 3 ~~l~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~------- 75 (704)
..+++|++|++++|.+++..+ +.++++|++|+|++|.++++.+ |.++++|++|++++|.+...+.-...
T Consensus 87 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 162 (466)
T 1o6v_A 87 KNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLS 162 (466)
T ss_dssp TTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEE
T ss_pred hccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCChhhccCCcccEee
Confidence 468899999999999996544 9999999999999999997644 89999999999999998875421100
Q ss_pred -----cccccCCCCCCCcEEEccCCCCcccCChhhhhcccccceEEecCCcccccCChhhhcCCCCCEEEccCCcCcccc
Q 005278 76 -----NFLSSLTNCRNLTVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNGTI 150 (704)
Q Consensus 76 -----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 150 (704)
.-...+.++++|++|++++|++... ..+..+ ++|++|++++|.+.+..+ ++.+++|++|++++|.+.+.
T Consensus 163 l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l-~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~- 236 (466)
T 1o6v_A 163 FGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKL-TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI- 236 (466)
T ss_dssp EEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGC-TTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-
T ss_pred cCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccC-CCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc-
Confidence 0012377889999999999999865 335555 479999999999997665 88899999999999999854
Q ss_pred ChhhcCCCCcCeeeccCcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCc
Q 005278 151 PTAVGRLRRLQGLYLHGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLE 230 (704)
Q Consensus 151 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 230 (704)
..+..+++|+.|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.+++..+ +..++
T Consensus 237 -~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~ 309 (466)
T 1o6v_A 237 -GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLK 309 (466)
T ss_dssp -GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCT
T ss_pred -hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCC
Confidence 468899999999999999996544 8899999999999999996543 8899999999999999996544 88999
Q ss_pred cccEEEecCcccCCCCCcccccCcCCcEEEeecCccCCCCCCCcCCCCCcceeeccCceeeccCCcccccccccceEEec
Q 005278 231 YVLYINLSANSLNGSLPSNIQNLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSLADNQFQGPVPKSFGSLISLESLDLS 310 (704)
Q Consensus 231 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~ 310 (704)
+|+.|++++|.+.+..| +..+++|+.|++++|++++. ..+..+++|+.|++++|++++..| +..+++|+.|+++
T Consensus 310 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~ 383 (466)
T 1o6v_A 310 NLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLN 383 (466)
T ss_dssp TCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECC
T ss_pred CCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEecc
Confidence 99999999999997655 78999999999999999964 478999999999999999998777 8999999999999
Q ss_pred ccCCCCC
Q 005278 311 RNNLSGE 317 (704)
Q Consensus 311 ~N~l~~~ 317 (704)
+|++++.
T Consensus 384 ~n~~~~~ 390 (466)
T 1o6v_A 384 DQAWTNA 390 (466)
T ss_dssp CEEEECC
T ss_pred CCcccCC
Confidence 9999974
No 291
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=1.1e-31 Score=279.07 Aligned_cols=270 Identities=21% Similarity=0.261 Sum_probs=239.0
Q ss_pred CCCCCEEecCCCcCcccCCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccCCCC
Q 005278 5 LPNLKYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTNC 84 (704)
Q Consensus 5 l~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~l 84 (704)
.+.++.|+|++|++++..+..|.++++|++|+|++|.++++.|..|.++++|++|+|++|.++.++.. + .
T Consensus 51 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~--------~--~ 120 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK--------M--P 120 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS--------C--C
T ss_pred CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChh--------h--c
Confidence 46899999999999988777999999999999999999999999999999999999999999876543 2 2
Q ss_pred CCCcEEEccCCCCcccCChhhhhcccccceEEecCCcccc--cCChhhhcCCCCCEEEccCCcCccccChhhcCCCCcCe
Q 005278 85 RNLTVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRG--NIPQEIGNLSGMIVFDLNGCDLNGTIPTAVGRLRRLQG 162 (704)
Q Consensus 85 ~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 162 (704)
++|++|++++|++.+..+..+..+. +|++|++++|.+.. ..+..+.++++|++|++++|.++. +|..+. ++|++
T Consensus 121 ~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~ 196 (330)
T 1xku_A 121 KTLQELRVHENEITKVRKSVFNGLN-QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTE 196 (330)
T ss_dssp TTCCEEECCSSCCCBBCHHHHTTCT-TCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSE
T ss_pred ccccEEECCCCcccccCHhHhcCCc-cccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCE
Confidence 7999999999999987777777764 79999999999964 788899999999999999999994 555443 89999
Q ss_pred eeccCcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCccc
Q 005278 163 LYLHGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSL 242 (704)
Q Consensus 163 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 242 (704)
|++++|++++..|..+..+++|++|+|++|.+++..+..+..+++|+.|++++|.++ .+|..+..+++|++|++++|.+
T Consensus 197 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i 275 (330)
T 1xku_A 197 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275 (330)
T ss_dssp EECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCC
T ss_pred EECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcC
Confidence 999999999888899999999999999999999887788999999999999999999 7888899999999999999999
Q ss_pred CCCCCccccc------CcCCcEEEeecCccCC--CCCCCcCCCCCcceeeccCce
Q 005278 243 NGSLPSNIQN------LKVLTNLDLSRNQLSG--DIPTTIGGLENLETLSLADNQ 289 (704)
Q Consensus 243 ~~~~~~~~~~------l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~ 289 (704)
++..+..|.. .+.|+.|++++|++.. ..|..|..+.+++.++|++|+
T Consensus 276 ~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 276 SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 9877777754 3789999999999964 567789999999999999985
No 292
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=8.5e-32 Score=280.07 Aligned_cols=269 Identities=22% Similarity=0.291 Sum_probs=238.6
Q ss_pred CCCCCEEecCCCcCcccCCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccCCCC
Q 005278 5 LPNLKYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTNC 84 (704)
Q Consensus 5 l~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~l 84 (704)
.++++.|+|++|.+++..+..|.++++|++|+|++|.++++.|..|.++++|++|+|++|.++.++... .
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~--------~-- 122 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNL--------P-- 122 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSC--------C--
T ss_pred CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccc--------c--
Confidence 468999999999999888889999999999999999999999999999999999999999998765432 2
Q ss_pred CCCcEEEccCCCCcccCChhhhhcccccceEEecCCccc--ccCChhhhcCCCCCEEEccCCcCccccChhhcCCCCcCe
Q 005278 85 RNLTVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLR--GNIPQEIGNLSGMIVFDLNGCDLNGTIPTAVGRLRRLQG 162 (704)
Q Consensus 85 ~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 162 (704)
++|++|++++|++....+..+..+ ++|++|++++|.++ +..+..+..+ +|++|++++|.+++ +|..+. ++|++
T Consensus 123 ~~L~~L~l~~n~i~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~ 197 (332)
T 2ft3_A 123 SSLVELRIHDNRIRKVPKGVFSGL-RNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNE 197 (332)
T ss_dssp TTCCEEECCSSCCCCCCSGGGSSC-SSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSC
T ss_pred ccCCEEECCCCccCccCHhHhCCC-ccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCE
Confidence 799999999999997777777776 47999999999996 4778888888 99999999999995 555444 79999
Q ss_pred eeccCcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCccc
Q 005278 163 LYLHGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSL 242 (704)
Q Consensus 163 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 242 (704)
|++++|++++..+..+..+++|++|+|++|++++..+..+..+++|+.|++++|.++ .+|..+..+++|++|++++|.+
T Consensus 198 L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l 276 (332)
T 2ft3_A 198 LHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI 276 (332)
T ss_dssp CBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCC
T ss_pred EECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCC
Confidence 999999999888889999999999999999999887788999999999999999999 7888899999999999999999
Q ss_pred CCCCCccccc------CcCCcEEEeecCccC--CCCCCCcCCCCCcceeeccCce
Q 005278 243 NGSLPSNIQN------LKVLTNLDLSRNQLS--GDIPTTIGGLENLETLSLADNQ 289 (704)
Q Consensus 243 ~~~~~~~~~~------l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~L~~n~ 289 (704)
++..+..|.. .+.|+.|++++|++. +..|..|..+++|+.|++++|+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 277 TKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 9777777765 467999999999997 5778889999999999999985
No 293
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.4e-31 Score=287.56 Aligned_cols=296 Identities=20% Similarity=0.175 Sum_probs=223.3
Q ss_pred CCCCCCEEecCCCcCcccCCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccCCC
Q 005278 4 MLPNLKYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTN 83 (704)
Q Consensus 4 ~l~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~ 83 (704)
.+++|++|++++|.+++. | .|..+++|++|+|++|.++++ + |+.+++|++|++++|.++.++ +.+
T Consensus 40 ~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~~----------~~~ 104 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNLD----------VTP 104 (457)
T ss_dssp HHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC----------CTT
T ss_pred HcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCceee----------cCC
Confidence 478999999999999964 5 699999999999999999976 3 889999999999999998753 778
Q ss_pred CCCCcEEEccCCCCcccCChhhhhcccccceEEecCCcccccCChhhhcCCCCCEEEccCCcCccccChhhcCCCCcCee
Q 005278 84 CRNLTVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNGTIPTAVGRLRRLQGL 163 (704)
Q Consensus 84 l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 163 (704)
+++|++|+|++|++++. + +..+ ++|++|++++|++++. .++++++|++|++++|...+.+ .++.+++|+.|
T Consensus 105 l~~L~~L~L~~N~l~~l-~--~~~l-~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L 175 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTKL-D--VSQN-PLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTL 175 (457)
T ss_dssp CTTCCEEECCSSCCSCC-C--CTTC-TTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEE
T ss_pred CCcCCEEECCCCcCCee-c--CCCC-CcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEE
Confidence 99999999999999874 3 5555 4799999999999874 3788899999999999655444 47788999999
Q ss_pred eccCcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCcccC
Q 005278 164 YLHGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLN 243 (704)
Q Consensus 164 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 243 (704)
++++|++++ +| +..+++|+.|++++|++++. .+..+++|+.|++++|++++ +| +..+++|+.|++++|.++
T Consensus 176 ~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 176 DCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp ECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCS
T ss_pred ECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCC
Confidence 999999985 44 78888999999999998854 37888899999999999986 44 778889999999999988
Q ss_pred CCCCcccccCc-------CCcEEEeecCccCCCCCCCcCCCCCcceeeccCceeeccCCcc--------cccccccceEE
Q 005278 244 GSLPSNIQNLK-------VLTNLDLSRNQLSGDIPTTIGGLENLETLSLADNQFQGPVPKS--------FGSLISLESLD 308 (704)
Q Consensus 244 ~~~~~~~~~l~-------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~--------~~~l~~L~~L~ 308 (704)
+..+..+.++. +|+.|++++|++.+.+| ++.+++|+.|++++|.+.+.+|.. +..+++|+.|+
T Consensus 247 ~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~ 324 (457)
T 3bz5_A 247 ELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLY 324 (457)
T ss_dssp CCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE
T ss_pred CcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEE
Confidence 76544444333 34445555555444444 356677777777777655554432 44556677777
Q ss_pred ecccCCCCCCCCCcccccccCcccccCCC
Q 005278 309 LSRNNLSGEIPKNFSAQSFLSNYALCGPA 337 (704)
Q Consensus 309 l~~N~l~~~~p~~~~~~~~l~~~~l~g~~ 337 (704)
+++|++++. + +...+.+....+.++.
T Consensus 325 L~~N~l~~l-~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 325 LNNTELTEL-D--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp CTTCCCSCC-C--CTTCTTCSEEECCSSC
T ss_pred CCCCccccc-c--cccCCcCcEEECCCCC
Confidence 777777763 2 4444444444444443
No 294
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=1.1e-31 Score=276.07 Aligned_cols=283 Identities=21% Similarity=0.232 Sum_probs=193.5
Q ss_pred CEEecCCCcCcccCCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccCCCCCCCc
Q 005278 9 KYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTNCRNLT 88 (704)
Q Consensus 9 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~l~~L~ 88 (704)
+.++++++.++ .+|..+. ++|++|+|++|.++.+.+..|.++++|++|+|++|.++.... .+..+..+++|+
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~~~~~~L~ 81 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGC-----CSQSDFGTTSLK 81 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEE-----EEHHHHSCSCCC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccC-----cccccccccccC
Confidence 46777777777 5565443 577777777777776666667777777777777777765431 012244566777
Q ss_pred EEEccCCCCcccCChhhhhcccccceEEecCCcccccCChhhhcCCCCCEEEccCCcCccccC-hhhcCCCCcCeeeccC
Q 005278 89 VLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNGTIP-TAVGRLRRLQGLYLHG 167 (704)
Q Consensus 89 ~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~ 167 (704)
+|+|++|.+.. +|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++
T Consensus 82 ~L~Ls~n~i~~--------------------------l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 135 (306)
T 2z66_A 82 YLDLSFNGVIT--------------------------MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 135 (306)
T ss_dssp EEECCSCSEEE--------------------------EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTT
T ss_pred EEECCCCcccc--------------------------ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCC
Confidence 77777766652 23345566777777777777765444 4677777777777777
Q ss_pred cccCCCCCccccCCCCCCEEEcCCCcCCc-cCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCcccCCCC
Q 005278 168 NKLQGSIPYDLCHLEGLSELNLNGNKLCG-HVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLNGSL 246 (704)
Q Consensus 168 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 246 (704)
|.+++..+..+..+++|++|++++|.+++ ..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..
T Consensus 136 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 215 (306)
T 2z66_A 136 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 215 (306)
T ss_dssp SCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred CcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccC
Confidence 77776666777777777777777777765 46667777777777777777777766777777777777777777777666
Q ss_pred CcccccCcCCcEEEeecCccCCCCCCCcCCCC-CcceeeccCceeeccCC--cccccccccceEEecccCCCCCCCCCcc
Q 005278 247 PSNIQNLKVLTNLDLSRNQLSGDIPTTIGGLE-NLETLSLADNQFQGPVP--KSFGSLISLESLDLSRNNLSGEIPKNFS 323 (704)
Q Consensus 247 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~l~~N~l~~~~p~~~~ 323 (704)
+..+..+++|+.|++++|++++..|..+..++ +|+.|+|++|++++.-+ .....+...+.+.+..+.+.+..|..+.
T Consensus 216 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~ 295 (306)
T 2z66_A 216 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQ 295 (306)
T ss_dssp SGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGT
T ss_pred hhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhC
Confidence 66777778888888888888877777777774 78888888888875322 1123344455555666666666665544
Q ss_pred cc
Q 005278 324 AQ 325 (704)
Q Consensus 324 ~~ 325 (704)
..
T Consensus 296 g~ 297 (306)
T 2z66_A 296 GM 297 (306)
T ss_dssp TC
T ss_pred Cc
Confidence 43
No 295
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=6.8e-31 Score=284.06 Aligned_cols=278 Identities=21% Similarity=0.203 Sum_probs=235.5
Q ss_pred CCCCCCCEEecCCCcCcccCCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccCC
Q 005278 3 YMLPNLKYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLT 82 (704)
Q Consensus 3 ~~l~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~ 82 (704)
..+++|++|+|++|.+++. | ++.+++|++|+|++|.++++ + |.++++|++|++++|+++.++ +.
T Consensus 61 ~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~l~----------~~ 124 (457)
T 3bz5_A 61 EKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTKLD----------VS 124 (457)
T ss_dssp GGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSCCC----------CT
T ss_pred cccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCeec----------CC
Confidence 4689999999999999964 4 99999999999999999986 3 899999999999999998753 78
Q ss_pred CCCCCcEEEccCCCCcccCChhhhhcccccceEEecCCcccccCChhhhcCCCCCEEEccCCcCccccChhhcCCCCcCe
Q 005278 83 NCRNLTVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNGTIPTAVGRLRRLQG 162 (704)
Q Consensus 83 ~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 162 (704)
.+++|++|++++|++++. + +..+ ++|++|++++|...+.+ .++.+++|++|++++|.+++ +| ++.+++|+.
T Consensus 125 ~l~~L~~L~l~~N~l~~l-~--l~~l-~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~ 195 (457)
T 3bz5_A 125 QNPLLTYLNCARNTLTEI-D--VSHN-TQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNR 195 (457)
T ss_dssp TCTTCCEEECTTSCCSCC-C--CTTC-TTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCE
T ss_pred CCCcCCEEECCCCcccee-c--cccC-CcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCE
Confidence 899999999999999975 2 5554 47999999999666555 48899999999999999996 44 889999999
Q ss_pred eeccCcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCc-------cccEE
Q 005278 163 LYLHGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLE-------YVLYI 235 (704)
Q Consensus 163 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-------~L~~L 235 (704)
|++++|++++. .+..+++|++|++++|++++ +| +..+++|+.|++++|.+++..+..+..+. +|+.|
T Consensus 196 L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L 269 (457)
T 3bz5_A 196 LNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEI 269 (457)
T ss_dssp EECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCC
T ss_pred EECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEE
Confidence 99999999964 48899999999999999996 55 88999999999999999987655554444 44556
Q ss_pred EecCcccCCCCCcccccCcCCcEEEeecCccCCCCCC--------CcCCCCCcceeeccCceeeccCCcccccccccceE
Q 005278 236 NLSANSLNGSLPSNIQNLKVLTNLDLSRNQLSGDIPT--------TIGGLENLETLSLADNQFQGPVPKSFGSLISLESL 307 (704)
Q Consensus 236 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--------~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 307 (704)
++++|.+.+.+| ++.+++|+.|++++|+..+.+|. .+..+++|+.|++++|++++. + +..+++|+.|
T Consensus 270 ~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L 344 (457)
T 3bz5_A 270 DLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSL 344 (457)
T ss_dssp CCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEE
T ss_pred ECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--cccCCcCcEE
Confidence 666666554444 56789999999999987766554 366778999999999999973 3 8899999999
Q ss_pred EecccCCCC
Q 005278 308 DLSRNNLSG 316 (704)
Q Consensus 308 ~l~~N~l~~ 316 (704)
++++|++++
T Consensus 345 ~l~~N~l~~ 353 (457)
T 3bz5_A 345 SCVNAHIQD 353 (457)
T ss_dssp ECCSSCCCB
T ss_pred ECCCCCCCC
Confidence 999999997
No 296
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=1.3e-30 Score=273.58 Aligned_cols=281 Identities=19% Similarity=0.216 Sum_probs=163.8
Q ss_pred CCCCEEecCCCcCcccCCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccCCCCC
Q 005278 6 PNLKYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTNCR 85 (704)
Q Consensus 6 ~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~l~ 85 (704)
+.....++++++++ .+|..+. ++|++|+|++|.++++.+..|.++++|++|+|++|.++.+.... |.+++
T Consensus 31 ~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-------~~~l~ 100 (353)
T 2z80_A 31 DRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS-------FSSLG 100 (353)
T ss_dssp CTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT-------TTTCT
T ss_pred CCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhh-------cCCCC
Confidence 33455677777777 5566554 47788888888887776667777888888888877777654433 77777
Q ss_pred CCcEEEccCCCCcccCChhhhhcccccceEEecCCcccccCC-hhhhcCCCCCEEEccCC-cCccccChhhcCCCCcCee
Q 005278 86 NLTVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIP-QEIGNLSGMIVFDLNGC-DLNGTIPTAVGRLRRLQGL 163 (704)
Q Consensus 86 ~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 163 (704)
+|++|+|++|++++..+..+..+ ++|++|++++|++++..+ ..+.++++|++|++++| .+....+..|.++++|++|
T Consensus 101 ~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 179 (353)
T 2z80_A 101 SLEHLDLSYNYLSNLSSSWFKPL-SSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL 179 (353)
T ss_dssp TCCEEECCSSCCSSCCHHHHTTC-TTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred CCCEEECCCCcCCcCCHhHhCCC-ccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEE
Confidence 77777777777775433334444 346666666666654333 35555666666666665 3444444555556666666
Q ss_pred eccCcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCcccC
Q 005278 164 YLHGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLN 243 (704)
Q Consensus 164 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 243 (704)
++++|++++..|..+..+++|++|++++|+++......+..+++|+.|++++|.+++..+..+..
T Consensus 180 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~--------------- 244 (353)
T 2z80_A 180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST--------------- 244 (353)
T ss_dssp EEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-------------------
T ss_pred ECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccc---------------
Confidence 66666665555555555566666666666554222222334555555555555555433332221
Q ss_pred CCCCcccccCcCCcEEEeecCccCC----CCCCCcCCCCCcceeeccCceeeccCCcc-cccccccceEEecccCCCCCC
Q 005278 244 GSLPSNIQNLKVLTNLDLSRNQLSG----DIPTTIGGLENLETLSLADNQFQGPVPKS-FGSLISLESLDLSRNNLSGEI 318 (704)
Q Consensus 244 ~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~l~~N~l~~~~ 318 (704)
....+.++.+++++|.+++ .+|..+..+++|+.|++++|+++ .+|.. |..+++|+.|++++|++.+..
T Consensus 245 ------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 245 ------GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp --------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred ------ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 1123345555555555543 24455566666666666666666 34433 466666666666666666654
Q ss_pred C
Q 005278 319 P 319 (704)
Q Consensus 319 p 319 (704)
|
T Consensus 318 ~ 318 (353)
T 2z80_A 318 P 318 (353)
T ss_dssp H
T ss_pred C
Confidence 4
No 297
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=5.5e-29 Score=268.87 Aligned_cols=276 Identities=27% Similarity=0.376 Sum_probs=185.9
Q ss_pred CCCCCCEEecCCCcCcccCCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccCCC
Q 005278 4 MLPNLKYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTN 83 (704)
Q Consensus 4 ~l~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~ 83 (704)
..++|+.|++++|.+++ +|.. .++|++|++++|.++++... .++|++|++++|.++.++ .+.+
T Consensus 89 ~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~~lp---------~~~~ 151 (454)
T 1jl5_A 89 LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEKLP---------ELQN 151 (454)
T ss_dssp CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSSCC---------CCTT
T ss_pred CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCCCCc---------ccCC
Confidence 34667788888887775 5543 36777777777777753221 257888888888877643 2788
Q ss_pred CCCCcEEEccCCCCcccCChhhhhcccccceEEecCCcccccCChhhhcCCCCCEEEccCCcCccccChhhcCCCCcCee
Q 005278 84 CRNLTVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNGTIPTAVGRLRRLQGL 163 (704)
Q Consensus 84 l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 163 (704)
+++|++|++++|++++ +|..+ .+|++|++++|++++ +| .++++++|++|++++|.+++ +|.. .++|++|
T Consensus 152 l~~L~~L~l~~N~l~~-lp~~~----~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L 220 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKK-LPDLP----PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESI 220 (454)
T ss_dssp CTTCCEEECCSSCCSC-CCCCC----TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEE
T ss_pred CCCCCEEECCCCcCcc-cCCCc----ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEE
Confidence 8888888888888875 34322 368888888888886 45 58888888888888888874 3332 2477888
Q ss_pred eccCcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCcccC
Q 005278 164 YLHGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLN 243 (704)
Q Consensus 164 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 243 (704)
++++|+++ .+| .+..+++|++|++++|++++ +|.. +++|+.|++++|.+++ +|.. +++|++|++++|.++
T Consensus 221 ~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~ 290 (454)
T 1jl5_A 221 VAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFS 290 (454)
T ss_dssp ECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred ECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccC
Confidence 88888877 556 47777888888888887774 4432 2567777777776664 3322 245555555555554
Q ss_pred C--CCCcc-------------cccC-cCCcEEEeecCccCCCCCCCcCCCCCcceeeccCceeeccCCcccccccccceE
Q 005278 244 G--SLPSN-------------IQNL-KVLTNLDLSRNQLSGDIPTTIGGLENLETLSLADNQFQGPVPKSFGSLISLESL 307 (704)
Q Consensus 244 ~--~~~~~-------------~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 307 (704)
+ ..|.. +..+ ++|+.|++++|++++ +|.. +++|+.|++++|+++ .+|. .+++|+.|
T Consensus 291 ~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L 362 (454)
T 1jl5_A 291 GLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQL 362 (454)
T ss_dssp EESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEE
T ss_pred cccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEE
Confidence 3 22211 1122 477888888888874 5543 577888888888887 4665 46778888
Q ss_pred EecccCCCC--CCCCCcccc
Q 005278 308 DLSRNNLSG--EIPKNFSAQ 325 (704)
Q Consensus 308 ~l~~N~l~~--~~p~~~~~~ 325 (704)
++++|++++ .+|..+..+
T Consensus 363 ~L~~N~l~~l~~ip~~l~~L 382 (454)
T 1jl5_A 363 HVEYNPLREFPDIPESVEDL 382 (454)
T ss_dssp ECCSSCCSSCCCCCTTCCEE
T ss_pred ECCCCCCCcCCCChHHHHhh
Confidence 888888887 677666555
No 298
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=1.1e-29 Score=260.96 Aligned_cols=252 Identities=21% Similarity=0.232 Sum_probs=213.7
Q ss_pred CEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccCCCCCCCcEEEccCCCCcccCChhhhhccccc
Q 005278 33 IMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTNCRNLTVLGLASNPLRGILPPLIGNFSASL 112 (704)
Q Consensus 33 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L 112 (704)
+.++++++.++.+ |..+ .++|++|+|++|.++.++... |.++++|++|+|++|++...
T Consensus 10 ~~l~c~~~~l~~i-p~~~--~~~l~~L~L~~n~l~~i~~~~-------~~~l~~L~~L~L~~n~l~~~------------ 67 (306)
T 2z66_A 10 TEIRCNSKGLTSV-PTGI--PSSATRLELESNKLQSLPHGV-------FDKLTQLTKLSLSSNGLSFK------------ 67 (306)
T ss_dssp TEEECCSSCCSSC-CSCC--CTTCCEEECCSSCCCCCCTTT-------TTTCTTCSEEECCSSCCCEE------------
T ss_pred CEEEcCCCCcccC-CCCC--CCCCCEEECCCCccCccCHhH-------hhccccCCEEECCCCccCcc------------
Confidence 4677777777744 3322 256777777777777655443 66777777777777776522
Q ss_pred ceEEecCCcccccCChhhhcCCCCCEEEccCCcCccccChhhcCCCCcCeeeccCcccCCCCC-ccccCCCCCCEEEcCC
Q 005278 113 QEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNGTIPTAVGRLRRLQGLYLHGNKLQGSIP-YDLCHLEGLSELNLNG 191 (704)
Q Consensus 113 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~ 191 (704)
+..+..+..+++|++|+|++|.+. .++..+..+++|++|++++|++++..+ ..+..+++|++|++++
T Consensus 68 -----------~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 135 (306)
T 2z66_A 68 -----------GCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 135 (306)
T ss_dssp -----------EEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTT
T ss_pred -----------cCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCC
Confidence 123456677899999999999998 567779999999999999999996554 5799999999999999
Q ss_pred CcCCccCCccccCcCCCCEEEecCccCCC-CCCCcccCCccccEEEecCcccCCCCCcccccCcCCcEEEeecCccCCCC
Q 005278 192 NKLCGHVPPCLASLTSLRRLHLGSNKLTS-TMPSSFGSLEYVLYINLSANSLNGSLPSNIQNLKVLTNLDLSRNQLSGDI 270 (704)
Q Consensus 192 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 270 (704)
|.+++..+..+..+++|+.|++++|.+++ ..|..+..+++|++|++++|.+++..|..+..+++|+.|++++|++++..
T Consensus 136 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 215 (306)
T 2z66_A 136 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 215 (306)
T ss_dssp SCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred CcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccC
Confidence 99998888899999999999999999986 57889999999999999999999888999999999999999999999777
Q ss_pred CCCcCCCCCcceeeccCceeeccCCccccccc-ccceEEecccCCCCCC
Q 005278 271 PTTIGGLENLETLSLADNQFQGPVPKSFGSLI-SLESLDLSRNNLSGEI 318 (704)
Q Consensus 271 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~l~~N~l~~~~ 318 (704)
+..+..+++|+.|++++|++++..|..+..++ +|+.|++++|++++..
T Consensus 216 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 216 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp SGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred hhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence 77899999999999999999999999999985 9999999999998754
No 299
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=2.2e-30 Score=271.76 Aligned_cols=253 Identities=19% Similarity=0.133 Sum_probs=193.8
Q ss_pred CCcEEEccCCCCcccCChhhhhcccccceEEecCCcccccCChhhhcCCCCCEEEccCCcCccccChhhcCCCCcCeeec
Q 005278 86 NLTVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNGTIPTAVGRLRRLQGLYL 165 (704)
Q Consensus 86 ~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 165 (704)
+|++|+|++|++++..+..+..+ ++|++|++++|++++..+..|.++++|++|+|++|.+++..+..|.++++|++|++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRC-VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred cCcEEECCCCcCcccCHHHhccC-CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 44555555555544433344443 24555555555555566667888889999999999998666666889999999999
Q ss_pred cCcccCCCCC-ccccCCCCCCEEEcCCC-cCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCcccC
Q 005278 166 HGNKLQGSIP-YDLCHLEGLSELNLNGN-KLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLN 243 (704)
Q Consensus 166 ~~n~l~~~~~-~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 243 (704)
++|++++..+ ..+..+++|++|++++| .+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence 9999984433 37888999999999998 477666778999999999999999999888999999999999999999987
Q ss_pred CCCCcccccCcCCcEEEeecCccCCCCCCCcC---CCCCcceeeccCceeec----cCCcccccccccceEEecccCCCC
Q 005278 244 GSLPSNIQNLKVLTNLDLSRNQLSGDIPTTIG---GLENLETLSLADNQFQG----PVPKSFGSLISLESLDLSRNNLSG 316 (704)
Q Consensus 244 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~l~~N~l~~ 316 (704)
......+..+++|+.|++++|++++..+..+. ....++.++|++|.+++ .+|..+..+++|+.|++++|+++.
T Consensus 212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~ 291 (353)
T 2z80_A 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS 291 (353)
T ss_dssp THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC
T ss_pred cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc
Confidence 44444455689999999999999976555443 46778889999998876 577888999999999999999994
Q ss_pred CCCCCcccccccCcccccCCCcc
Q 005278 317 EIPKNFSAQSFLSNYALCGPARL 339 (704)
Q Consensus 317 ~~p~~~~~~~~l~~~~l~g~~~~ 339 (704)
..+..|...+.+....+.+++..
T Consensus 292 i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 292 VPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCHHHHhcCCCCCEEEeeCCCcc
Confidence 43334678888888888888743
No 300
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=2.2e-29 Score=260.53 Aligned_cols=233 Identities=22% Similarity=0.296 Sum_probs=122.9
Q ss_pred CCCCEEecCCCcCcccCCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccCCCCC
Q 005278 6 PNLKYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTNCR 85 (704)
Q Consensus 6 ~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~l~ 85 (704)
++++.|+|++|.++ .+|..+.++++|++|+|++|.++ .+|..|.++++|++|+|++|.++.+ +..+.+++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~l--------p~~l~~l~ 150 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRAL--------PASIASLN 150 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCC--------CGGGGGCT
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccC--------cHHHhcCc
Confidence 45555555555555 44555555555555555555555 4455555555555555555555432 22255555
Q ss_pred CCcEEEccCCCCcccCChhhhhcccccceEEecCCcccccCChhhhcCCCCCEEEccCCcCccccChhhcCCCCcCeeec
Q 005278 86 NLTVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNGTIPTAVGRLRRLQGLYL 165 (704)
Q Consensus 86 ~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 165 (704)
+|++|+|++|++.+.+|..+... ..+..+.++++|++|+|++|.++ .+|..++.+++|++|+|
T Consensus 151 ~L~~L~L~~n~~~~~~p~~~~~~----------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L 213 (328)
T 4fcg_A 151 RLRELSIRACPELTELPEPLAST----------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKI 213 (328)
T ss_dssp TCCEEEEEEETTCCCCCSCSEEE----------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEE
T ss_pred CCCEEECCCCCCccccChhHhhc----------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEc
Confidence 55555555555544444333221 11122344556666666666555 45555555555666666
Q ss_pred cCcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCcccCCC
Q 005278 166 HGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLNGS 245 (704)
Q Consensus 166 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 245 (704)
++|+++ .+|..+..+++|++|+|++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|++|+|++|.+.+.
T Consensus 214 ~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~ 292 (328)
T 4fcg_A 214 RNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR 292 (328)
T ss_dssp ESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC
T ss_pred cCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhh
Confidence 655555 3444555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCcccccCcCCcEEEeecCcc
Q 005278 246 LPSNIQNLKVLTNLDLSRNQL 266 (704)
Q Consensus 246 ~~~~~~~l~~L~~L~l~~n~l 266 (704)
+|..++++++|+.+++..|.+
T Consensus 293 iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 293 LPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp CCGGGGGSCTTCEEECCGGGS
T ss_pred ccHHHhhccCceEEeCCHHHH
Confidence 555555555555555444443
No 301
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=8.3e-29 Score=267.82 Aligned_cols=247 Identities=24% Similarity=0.281 Sum_probs=138.1
Q ss_pred CCEEecCCCcCcccCCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccCCCCCCC
Q 005278 8 LKYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTNCRNL 87 (704)
Q Consensus 8 l~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~l~~L 87 (704)
.+.++..++.++ .+|..+. ++++.|+|++|.++++.+..|.++++|++|+|++|.++.+.... |.++++|
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~-------~~~l~~L 114 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGA-------FNGLANL 114 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGG-------GTTCSSC
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhh-------ccCCccC
Confidence 345555555555 4454443 45666666666666555556666666666666666665544333 5555666
Q ss_pred cEEEccCCCCcccCChhhhhcccccceEEecCCcccccCChhhhcCCCCCEEEccCCcCccccChhhcCCCCcCeeeccC
Q 005278 88 TVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNGTIPTAVGRLRRLQGLYLHG 167 (704)
Q Consensus 88 ~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 167 (704)
++|+|++|+++.. .+..|..+++|++|+|++|.+....+..|..+++|++|+|++
T Consensus 115 ~~L~L~~n~l~~~-------------------------~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~ 169 (440)
T 3zyj_A 115 NTLELFDNRLTTI-------------------------PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE 169 (440)
T ss_dssp CEEECCSSCCSSC-------------------------CTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCC
T ss_pred CEEECCCCcCCee-------------------------CHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCC
Confidence 6666666655543 334455555555555555555544444555555555555555
Q ss_pred c-ccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCcccCCCC
Q 005278 168 N-KLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLNGSL 246 (704)
Q Consensus 168 n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 246 (704)
| .+....+..|.++++|++|+|++|+++ .+| .+..+++|+.|+|++|.+++..+..|..+++|+.|+|++|.+++..
T Consensus 170 ~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 247 (440)
T 3zyj_A 170 LKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE 247 (440)
T ss_dssp CTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEC
Confidence 2 233222334555555555555555555 333 2455555666666666555555555555666666666666665555
Q ss_pred CcccccCcCCcEEEeecCccCCCCCCCcCCCCCcceeeccCceee
Q 005278 247 PSNIQNLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSLADNQFQ 291 (704)
Q Consensus 247 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 291 (704)
+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|.+.
T Consensus 248 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 248 RNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred hhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 555666666666666666666555555566666666666666655
No 302
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=1.3e-29 Score=257.51 Aligned_cols=268 Identities=25% Similarity=0.303 Sum_probs=186.2
Q ss_pred CEEecCCCcCcccCCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccCCCCCCCc
Q 005278 9 KYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTNCRNLT 88 (704)
Q Consensus 9 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~l~~L~ 88 (704)
+.++++++.++ .+|..+ .++|++|+|++|.++++.+..|.++++|++|+|++|.++.+.... |..+++|+
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-------~~~l~~L~ 83 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA-------FTGLALLE 83 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT-------TTTCTTCC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhh-------cCCccCCC
Confidence 57788888887 556543 467888888888888777777888888888888888877654433 77778888
Q ss_pred EEEccCCC-CcccCChhhhhcccccceEEecCCcccccCChhhhcCCCCCEEEccCCcCccccChhhcCCCCcCeeeccC
Q 005278 89 VLGLASNP-LRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNGTIPTAVGRLRRLQGLYLHG 167 (704)
Q Consensus 89 ~L~L~~n~-i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 167 (704)
+|+|++|+ +.... +..+..+++|++|++++|.+.+..+..|..+++|++|++++
T Consensus 84 ~L~l~~n~~l~~~~-------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 138 (285)
T 1ozn_A 84 QLDLSDNAQLRSVD-------------------------PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138 (285)
T ss_dssp EEECCSCTTCCCCC-------------------------TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EEeCCCCCCccccC-------------------------HHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCC
Confidence 88888876 55333 44555666777777777777766666777777777777777
Q ss_pred cccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCcccCCCCC
Q 005278 168 NKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLNGSLP 247 (704)
Q Consensus 168 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 247 (704)
|++++..+..+..+++|++|+|++|++++..+..+..+++|+.|++++|.+++..+..|..+++|+.|++++|.+++..+
T Consensus 139 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 218 (285)
T 1ozn_A 139 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT 218 (285)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH
T ss_pred CcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCH
Confidence 77775555567777777777777777775555567777777777777777777667777777777777777777776655
Q ss_pred cccccCcCCcEEEeecCccCCCCCCCcCCCCCcceeeccCceeeccCCccccc--ccccceEEeccc
Q 005278 248 SNIQNLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSLADNQFQGPVPKSFGS--LISLESLDLSRN 312 (704)
Q Consensus 248 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~--l~~L~~L~l~~N 312 (704)
..+..+++|+.|++++|++....+. ..-+..++.+..+.+.+.+..|..+.+ +..++..++.+|
T Consensus 219 ~~~~~l~~L~~L~l~~N~~~c~~~~-~~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 219 EALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp HHHTTCTTCCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred HHcccCcccCEEeccCCCccCCCCc-HHHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 6677777888888888877643221 112234556667777777777777654 344444444443
No 303
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=8.1e-33 Score=301.87 Aligned_cols=331 Identities=18% Similarity=0.177 Sum_probs=253.5
Q ss_pred CCCCCCEEecCCCcCcc----cCCccccCCCCCCEEeccCccccccCchhh-cCCC----CCCEEecccccCCCcccchh
Q 005278 4 MLPNLKYLTLFDNKLSG----TIPNSITNASKLIMLDLSSNSFSGLIPNTF-GNLG----SLQVLSLAYNYLMTESSAAK 74 (704)
Q Consensus 4 ~l~~l~~L~l~~~~i~~----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~----~L~~L~L~~n~i~~~~~~~~ 74 (704)
.+++|+.|+|++|.+++ .++..+..+++|++|+|++|.+++..+..+ ..++ +|++|+|++|.++..+...
T Consensus 26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~- 104 (461)
T 1z7x_W 26 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV- 104 (461)
T ss_dssp HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH-
T ss_pred hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHH-
Confidence 46889999999999884 356778888999999999999987655444 3466 6999999999988654322
Q ss_pred hcccccCCCCCCCcEEEccCCCCcccCChhhhhc----ccccceEEecCCccccc----CChhhhcCCCCCEEEccCCcC
Q 005278 75 WNFLSSLTNCRNLTVLGLASNPLRGILPPLIGNF----SASLQEFYAYGCKLRGN----IPQEIGNLSGMIVFDLNGCDL 146 (704)
Q Consensus 75 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~----~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l 146 (704)
++..+..+++|++|+|++|++.+..+..++.. ..+|++|++++|++++. ++..+..+++|++|++++|.+
T Consensus 105 --l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 105 --LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp --HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred --HHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCc
Confidence 45568899999999999999987766666553 23699999999999874 466677889999999999998
Q ss_pred ccccChhhc-----CCCCcCeeeccCcccCCC----CCccccCCCCCCEEEcCCCcCCccC-----CccccCcCCCCEEE
Q 005278 147 NGTIPTAVG-----RLRRLQGLYLHGNKLQGS----IPYDLCHLEGLSELNLNGNKLCGHV-----PPCLASLTSLRRLH 212 (704)
Q Consensus 147 ~~~~~~~~~-----~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~ 212 (704)
....+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+++.. +..+..+++|+.|+
T Consensus 183 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~ 262 (461)
T 1z7x_W 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW 262 (461)
T ss_dssp HHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred chHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEE
Confidence 765554444 367999999999999854 4667778899999999999987532 22334578999999
Q ss_pred ecCccCCCC----CCCcccCCccccEEEecCcccCCCCCccccc-----CcCCcEEEeecCccCCC----CCCCcCCCCC
Q 005278 213 LGSNKLTST----MPSSFGSLEYVLYINLSANSLNGSLPSNIQN-----LKVLTNLDLSRNQLSGD----IPTTIGGLEN 279 (704)
Q Consensus 213 l~~n~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~~----~~~~~~~l~~ 279 (704)
+++|.++.. ++..+..+++|++|++++|.+.+..+..+.. .++|+.|++++|.+++. ++..+..+++
T Consensus 263 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 342 (461)
T 1z7x_W 263 IWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRF 342 (461)
T ss_dssp CTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSS
T ss_pred CcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCC
Confidence 999998853 4566777899999999999887554444443 26899999999998865 4556677899
Q ss_pred cceeeccCceeeccCCccccc-----ccccceEEecccCCCC----CCCCCcccccccCcccccCCC
Q 005278 280 LETLSLADNQFQGPVPKSFGS-----LISLESLDLSRNNLSG----EIPKNFSAQSFLSNYALCGPA 337 (704)
Q Consensus 280 L~~L~L~~n~l~~~~p~~~~~-----l~~L~~L~l~~N~l~~----~~p~~~~~~~~l~~~~l~g~~ 337 (704)
|+.|++++|.+++..+..+.. .++|+.|++++|++++ .+|..+...+.+....+.+++
T Consensus 343 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 343 LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp CCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred ccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 999999999998766655543 6789999999999875 556555555666666666654
No 304
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.2e-28 Score=267.64 Aligned_cols=247 Identities=24% Similarity=0.245 Sum_probs=139.6
Q ss_pred CCEEecCCCcCcccCCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccCCCCCCC
Q 005278 8 LKYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTNCRNL 87 (704)
Q Consensus 8 l~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~l~~L 87 (704)
.+.++.+++.++ .+|..+. ++|+.|+|++|.++++.+..|.++++|++|+|++|.|+.+.... |.++++|
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~-------~~~l~~L 125 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGA-------FNGLASL 125 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT-------TTTCTTC
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhh-------ccCcccC
Confidence 345666666666 4555443 56666666666666666666666666666666666666554333 6666666
Q ss_pred cEEEccCCCCcccCChhhhhcccccceEEecCCcccccCChhhhcCCCCCEEEccCCcCccccChhhcCCCCcCeeeccC
Q 005278 88 TVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNGTIPTAVGRLRRLQGLYLHG 167 (704)
Q Consensus 88 ~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 167 (704)
++|+|++|+++...+ ..|.++++|++|+|++|.++...+..|.++++|+.|++++
T Consensus 126 ~~L~L~~n~l~~~~~-------------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 180 (452)
T 3zyi_A 126 NTLELFDNWLTVIPS-------------------------GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE 180 (452)
T ss_dssp CEEECCSSCCSBCCT-------------------------TTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCC
T ss_pred CEEECCCCcCCccCh-------------------------hhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCC
Confidence 666666666664433 3444455555555555555544444555555555555555
Q ss_pred -cccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCcccCCCC
Q 005278 168 -NKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLNGSL 246 (704)
Q Consensus 168 -n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 246 (704)
|.++...+..|.++++|++|+|++|++++ +| .+..+++|+.|+|++|.+++..+..|..+++|+.|++++|.+.+..
T Consensus 181 ~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 258 (452)
T 3zyi_A 181 LKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE 258 (452)
T ss_dssp CTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEEC
T ss_pred CCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceEC
Confidence 23332222345555555555555555552 22 2445555555555555555555555555555555555555555555
Q ss_pred CcccccCcCCcEEEeecCccCCCCCCCcCCCCCcceeeccCceee
Q 005278 247 PSNIQNLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSLADNQFQ 291 (704)
Q Consensus 247 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 291 (704)
+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++.
T Consensus 259 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 259 RNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred HHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 555555666666666666666545555556666666666666655
No 305
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=6.2e-31 Score=271.33 Aligned_cols=268 Identities=21% Similarity=0.222 Sum_probs=191.6
Q ss_pred CCCEEecCCCcCcccCCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccCCCCCC
Q 005278 7 NLKYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTNCRN 86 (704)
Q Consensus 7 ~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~l~~ 86 (704)
.++.++++.+.+.......+..+++|++|+|++|.++++.+..|.++++|++|+|++|.++.... +..+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---------~~~l~~ 81 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---------LESLST 81 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---------ETTCTT
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---------hhhcCC
Confidence 35666777777776655666667788888888888888777888888888888888888765331 677788
Q ss_pred CcEEEccCCCCcccCChhhhhcccccceEEecCCcccccCChhhhcCCCCCEEEccCCcCccccChhhcCCCCcCeeecc
Q 005278 87 LTVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNGTIPTAVGRLRRLQGLYLH 166 (704)
Q Consensus 87 L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 166 (704)
|++|+|++|++++.. ..++|++|++++|.+++..+. .+++|++|+++
T Consensus 82 L~~L~Ls~n~l~~l~------------------------------~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~ 128 (317)
T 3o53_A 82 LRTLDLNNNYVQELL------------------------------VGPSIETLHAANNNISRVSCS---RGQGKKNIYLA 128 (317)
T ss_dssp CCEEECCSSEEEEEE------------------------------ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECC
T ss_pred CCEEECcCCcccccc------------------------------CCCCcCEEECCCCccCCcCcc---ccCCCCEEECC
Confidence 888888888776332 124566666666666544332 24566666777
Q ss_pred CcccCCCCCccccCCCCCCEEEcCCCcCCccCCccc-cCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCcccCCC
Q 005278 167 GNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCL-ASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLNGS 245 (704)
Q Consensus 167 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 245 (704)
+|++++..+..+..+++|++|+|++|.+++..+..+ ..+++|+.|++++|.+++. + ....+++|++|++++|.+++
T Consensus 129 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~- 205 (317)
T 3o53_A 129 NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF- 205 (317)
T ss_dssp SSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-
T ss_pred CCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-
Confidence 777665555566666777777777777765555544 3567777777777777644 2 22247778888888888774
Q ss_pred CCcccccCcCCcEEEeecCccCCCCCCCcCCCCCcceeeccCceee-ccCCcccccccccceEEeccc-CCCCCCCC
Q 005278 246 LPSNIQNLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSLADNQFQ-GPVPKSFGSLISLESLDLSRN-NLSGEIPK 320 (704)
Q Consensus 246 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~l~~N-~l~~~~p~ 320 (704)
+|..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|++. +.+|..+..+++|+.+++++| .+.|..|.
T Consensus 206 l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 206 MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 4445788888999999999998 67788889999999999999998 778888899999999999844 45555443
No 306
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=6.6e-29 Score=252.32 Aligned_cols=237 Identities=21% Similarity=0.194 Sum_probs=157.5
Q ss_pred CCcEEEccCCCCcccCChhhhhcccccceEEecCCcccccCChhhhcCCCCCEEEccCCc-CccccChhhcCCCCcCeee
Q 005278 86 NLTVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCD-LNGTIPTAVGRLRRLQGLY 164 (704)
Q Consensus 86 ~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 164 (704)
+|++|+|++|+++...+..|..+. +|++|++++|.+++..+..+.++++|++|++++|. +....+..|..+++|++|+
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACR-NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CceEEEeeCCcCCccCHHHcccCC-CCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 344444444444433333333321 34444444444444455666777778888888876 6656677777788888888
Q ss_pred ccCcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCcccCC
Q 005278 165 LHGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLNG 244 (704)
Q Consensus 165 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 244 (704)
+++|++++..|..+..+++|++|++++|++++..+..+..+++|+.|++++|.+++..+..|..+++|++|++++|.+.+
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 88888876667777777888888888888776555667777788888888887776666667777788888888887777
Q ss_pred CCCcccccCcCCcEEEeecCccCCCCCCCcCCCCCcceeeccCceeeccCCcccccccccceEEecccCCCCCCCCCccc
Q 005278 245 SLPSNIQNLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSLADNQFQGPVPKSFGSLISLESLDLSRNNLSGEIPKNFSA 324 (704)
Q Consensus 245 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~ 324 (704)
..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++....+.. .-...++.+..+.|.+.+..|+.+..
T Consensus 192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g 270 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAG 270 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTT
T ss_pred cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCC
Confidence 77777777777888888888777655566777777778888877777433221 22234555566677777666665443
No 307
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=6.7e-29 Score=268.20 Aligned_cols=270 Identities=23% Similarity=0.238 Sum_probs=176.4
Q ss_pred CCCCCCEEecCCCcCcccCCccccCCCCCCEEeccCccccccCchhhcCCCCC-------------CEEecccccCCCcc
Q 005278 4 MLPNLKYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSL-------------QVLSLAYNYLMTES 70 (704)
Q Consensus 4 ~l~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L-------------~~L~L~~n~i~~~~ 70 (704)
+.++|+.|++++|++ +.+|.+|+++++|++|++++|.+++..|..++++++| ++|++++|.++.++
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp 87 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP 87 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence 457899999999999 5899999999999999999999999999999888864 89999999887754
Q ss_pred cchhhcccccCCCCCCCcEEEccCCCCcccCChhhhhcccccceEEecCCcccccCChhhhcCCCCCEEEccCCcCcccc
Q 005278 71 SAAKWNFLSSLTNCRNLTVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNGTI 150 (704)
Q Consensus 71 ~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 150 (704)
. -.++|++|++++|.+++ +|.. ..+|++|++++|++++. +.. .++|++|++++|.+++ +
T Consensus 88 ~-----------~~~~L~~L~l~~n~l~~-lp~~----~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-l 146 (454)
T 1jl5_A 88 E-----------LPPHLESLVASCNSLTE-LPEL----PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-L 146 (454)
T ss_dssp S-----------CCTTCSEEECCSSCCSS-CCCC----CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-C
T ss_pred C-----------CcCCCCEEEccCCcCCc-cccc----cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-C
Confidence 2 12678888888888886 4432 24688888888877742 211 1578888888888875 5
Q ss_pred ChhhcCCCCcCeeeccCcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCc
Q 005278 151 PTAVGRLRRLQGLYLHGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLE 230 (704)
Q Consensus 151 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 230 (704)
| .|+++++|++|++++|++++ +|..+ ++|++|++++|++++ +| .+..+++|+.|++++|.+++ +|... +
T Consensus 147 p-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~ 215 (454)
T 1jl5_A 147 P-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---L 215 (454)
T ss_dssp C-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---T
T ss_pred c-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---C
Confidence 5 47788888888888888874 55433 478888888888875 45 47778888888888888774 33322 4
Q ss_pred cccEEEecCcccCCCCCcccccCcCCcEEEeecCccCCCCCCCcCCCCCcceeeccCceeeccCCcccccccccceEEec
Q 005278 231 YVLYINLSANSLNGSLPSNIQNLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSLADNQFQGPVPKSFGSLISLESLDLS 310 (704)
Q Consensus 231 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~ 310 (704)
+|++|++++|.+. .+| .++.+++|+.|++++|++++ +|.. +++|+.|++++|++++ +|.. .++|+.|+++
T Consensus 216 ~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls 285 (454)
T 1jl5_A 216 SLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVS 285 (454)
T ss_dssp TCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECC
T ss_pred cccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECc
Confidence 7777888888777 555 37777778888888887774 4432 3677777777777774 4443 3567777777
Q ss_pred ccCCCC
Q 005278 311 RNNLSG 316 (704)
Q Consensus 311 ~N~l~~ 316 (704)
+|++++
T Consensus 286 ~N~l~~ 291 (454)
T 1jl5_A 286 ENIFSG 291 (454)
T ss_dssp SSCCSE
T ss_pred CCccCc
Confidence 777766
No 308
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=2e-28 Score=265.87 Aligned_cols=252 Identities=20% Similarity=0.202 Sum_probs=218.1
Q ss_pred CCCEEecccccCCCcccchhhcccccCCCCCCCcEEEccCCCCcccCChhhhhcccccceEEecCCcccccCChhhhcCC
Q 005278 55 SLQVLSLAYNYLMTESSAAKWNFLSSLTNCRNLTVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLS 134 (704)
Q Consensus 55 ~L~~L~L~~n~i~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 134 (704)
....++.+++.++.++.. + .++|++|+|++|+|.+..+..|..+. +|++|+|++|.+++..+..|.+++
T Consensus 55 ~~~~v~c~~~~l~~iP~~--------~--~~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~ 123 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQG--------I--PSNTRYLNLMENNIQMIQADTFRHLH-HLEVLQLGRNSIRQIEVGAFNGLA 123 (452)
T ss_dssp SSCEEECCSSCCSSCCSC--------C--CTTCSEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCT
T ss_pred CCcEEEECCCCcCccCCC--------C--CCCccEEECcCCcCceECHHHcCCCC-CCCEEECCCCccCCcChhhccCcc
Confidence 356777777777765532 2 25778888888888877777777764 688888888888888888999999
Q ss_pred CCCEEEccCCcCccccChhhcCCCCcCeeeccCcccCCCCCccccCCCCCCEEEcCC-CcCCccCCccccCcCCCCEEEe
Q 005278 135 GMIVFDLNGCDLNGTIPTAVGRLRRLQGLYLHGNKLQGSIPYDLCHLEGLSELNLNG-NKLCGHVPPCLASLTSLRRLHL 213 (704)
Q Consensus 135 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l 213 (704)
+|++|+|++|.++...+..|..+++|++|+|++|+|+...+..|..+++|++|+|++ |.+....+..|..+++|+.|++
T Consensus 124 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L 203 (452)
T 3zyi_A 124 SLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNL 203 (452)
T ss_dssp TCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEEC
T ss_pred cCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEEC
Confidence 999999999999988888899999999999999999977777899999999999999 4565444567999999999999
Q ss_pred cCccCCCCCCCcccCCccccEEEecCcccCCCCCcccccCcCCcEEEeecCccCCCCCCCcCCCCCcceeeccCceeecc
Q 005278 214 GSNKLTSTMPSSFGSLEYVLYINLSANSLNGSLPSNIQNLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSLADNQFQGP 293 (704)
Q Consensus 214 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 293 (704)
++|.+++. ..+..+++|+.|+|++|.+.+..|..|.++++|+.|++++|++++..+..|.++++|+.|+|++|++++.
T Consensus 204 ~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 281 (452)
T 3zyi_A 204 GMCNIKDM--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL 281 (452)
T ss_dssp TTSCCSSC--CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCccccc--ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCcc
Confidence 99999854 3588999999999999999988899999999999999999999988899999999999999999999987
Q ss_pred CCcccccccccceEEecccCCCCCCC
Q 005278 294 VPKSFGSLISLESLDLSRNNLSGEIP 319 (704)
Q Consensus 294 ~p~~~~~l~~L~~L~l~~N~l~~~~p 319 (704)
.+..+..+++|+.|++++|++.+...
T Consensus 282 ~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 282 PHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp CTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred ChHHhccccCCCEEEccCCCcCCCCC
Confidence 77888999999999999999986543
No 309
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=1e-28 Score=255.60 Aligned_cols=225 Identities=20% Similarity=0.258 Sum_probs=171.1
Q ss_pred CCCcEEEccCCCCcccCChhhhhcccccceEEecCCcccccCChhhhcCCCCCEEEccCCcCccccChhhcCCCCcCeee
Q 005278 85 RNLTVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNGTIPTAVGRLRRLQGLY 164 (704)
Q Consensus 85 ~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 164 (704)
+++++|+|++|++. .+|..+..+ ++|++|+|++|.++ .+|..++++++|++|+|++|.+. .+|..++.+++|++|+
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l-~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRL-SHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGG-TTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred cceeEEEccCCCch-hcChhhhhC-CCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 45555555555555 344444443 34555555555555 55666677777777777777777 5677777777777777
Q ss_pred ccCcccCCCCCccccC---------CCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEE
Q 005278 165 LHGNKLQGSIPYDLCH---------LEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYI 235 (704)
Q Consensus 165 L~~n~l~~~~~~~l~~---------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 235 (704)
|++|++.+.+|..+.. +++|++|+|++|+++ .+|..+..+++|+.|++++|.+++ +|..+..+++|++|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L 234 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEEL 234 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEE
Confidence 7777766667766554 888888888888888 777778888888888888888884 55678888888888
Q ss_pred EecCcccCCCCCcccccCcCCcEEEeecCccCCCCCCCcCCCCCcceeeccCceeeccCCcccccccccceEEecccCCC
Q 005278 236 NLSANSLNGSLPSNIQNLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSLADNQFQGPVPKSFGSLISLESLDLSRNNLS 315 (704)
Q Consensus 236 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 315 (704)
++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|+|++|++.+.+|..+..+++|+.+++..|.+.
T Consensus 235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888877665
No 310
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=2.5e-28 Score=264.00 Aligned_cols=250 Identities=20% Similarity=0.233 Sum_probs=208.2
Q ss_pred CCEEecccccCCCcccchhhcccccCCCCCCCcEEEccCCCCcccCChhhhhcccccceEEecCCcccccCChhhhcCCC
Q 005278 56 LQVLSLAYNYLMTESSAAKWNFLSSLTNCRNLTVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSG 135 (704)
Q Consensus 56 L~~L~L~~n~i~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 135 (704)
.+.++.+++.++.++.. + .++++.|+|++|++....+..|..+. +|++|+|++|.+++..+..|.++++
T Consensus 45 ~~~v~c~~~~l~~iP~~--------~--~~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~i~~~~~~~l~~ 113 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDG--------I--STNTRLLNLHENQIQIIKVNSFKHLR-HLEILQLSRNHIRTIEIGAFNGLAN 113 (440)
T ss_dssp SCEEECCSCCCSSCCSC--------C--CTTCSEEECCSCCCCEECTTTTSSCS-SCCEEECCSSCCCEECGGGGTTCSS
T ss_pred CCEEEeCCCCcCcCCCC--------C--CCCCcEEEccCCcCCeeCHHHhhCCC-CCCEEECCCCcCCccChhhccCCcc
Confidence 45566666666554432 1 14566666666666666556665553 5666666667666677788999999
Q ss_pred CCEEEccCCcCccccChhhcCCCCcCeeeccCcccCCCCCccccCCCCCCEEEcCCC-cCCccCCccccCcCCCCEEEec
Q 005278 136 MIVFDLNGCDLNGTIPTAVGRLRRLQGLYLHGNKLQGSIPYDLCHLEGLSELNLNGN-KLCGHVPPCLASLTSLRRLHLG 214 (704)
Q Consensus 136 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~ 214 (704)
|++|+|++|.++...+..|..+++|++|+|++|+|+...+..|..+++|++|+|++| .+....+..|.++++|+.|+++
T Consensus 114 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~ 193 (440)
T 3zyj_A 114 LNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA 193 (440)
T ss_dssp CCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECT
T ss_pred CCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCC
Confidence 999999999999777778999999999999999999777778999999999999995 5554455679999999999999
Q ss_pred CccCCCCCCCcccCCccccEEEecCcccCCCCCcccccCcCCcEEEeecCccCCCCCCCcCCCCCcceeeccCceeeccC
Q 005278 215 SNKLTSTMPSSFGSLEYVLYINLSANSLNGSLPSNIQNLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSLADNQFQGPV 294 (704)
Q Consensus 215 ~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 294 (704)
+|.++. +| .+..+++|+.|+|++|.+++..+..|.++++|+.|++++|++++..+..|.++++|+.|+|++|++++..
T Consensus 194 ~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 271 (440)
T 3zyj_A 194 MCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP 271 (440)
T ss_dssp TSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC
T ss_pred CCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC
Confidence 999984 44 5889999999999999999888999999999999999999999888999999999999999999999877
Q ss_pred CcccccccccceEEecccCCCCCC
Q 005278 295 PKSFGSLISLESLDLSRNNLSGEI 318 (704)
Q Consensus 295 p~~~~~l~~L~~L~l~~N~l~~~~ 318 (704)
+..|..+++|+.|+|++|++.+..
T Consensus 272 ~~~~~~l~~L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 272 HDLFTPLHHLERIHLHHNPWNCNC 295 (440)
T ss_dssp TTTTSSCTTCCEEECCSSCEECSS
T ss_pred hhHhccccCCCEEEcCCCCccCCC
Confidence 888899999999999999998643
No 311
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=4.3e-28 Score=269.68 Aligned_cols=268 Identities=25% Similarity=0.349 Sum_probs=226.1
Q ss_pred CCCEEecCCCcCcccCCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccCCCCCC
Q 005278 7 NLKYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTNCRN 86 (704)
Q Consensus 7 ~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~l~~ 86 (704)
+++.|++++|+++ .+|..+. ++|++|+|++|.++.+.+ .+++|++|+|++|+++.++. .+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~-----------~l~~ 102 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV-----------LPPG 102 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC-----------CCTT
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC-----------CCCC
Confidence 5899999999999 7788776 899999999999996544 58999999999999987542 5789
Q ss_pred CcEEEccCCCCcccCChhhhhcccccceEEecCCcccccCChhhhcCCCCCEEEccCCcCccccChhhcCCCCcCeeecc
Q 005278 87 LTVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNGTIPTAVGRLRRLQGLYLH 166 (704)
Q Consensus 87 L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 166 (704)
|++|+|++|++++..+ ...+|+.|++++|++++ +|.. +++|++|+|++|.+++ +|. .+++|+.|+++
T Consensus 103 L~~L~Ls~N~l~~l~~-----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~ 169 (622)
T 3g06_A 103 LLELSIFSNPLTHLPA-----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAY 169 (622)
T ss_dssp CCEEEECSCCCCCCCC-----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECC
T ss_pred CCEEECcCCcCCCCCC-----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECC
Confidence 9999999999996433 34689999999999986 4443 5899999999999995 443 35789999999
Q ss_pred CcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCcccCCCC
Q 005278 167 GNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLNGSL 246 (704)
Q Consensus 167 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 246 (704)
+|+|++ +| ..+++|+.|+|++|.+++ +|.. +++|+.|++++|.++. +|.. +++|+.|++++|.+++ +
T Consensus 170 ~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~-l~~~---~~~L~~L~Ls~N~L~~-l 236 (622)
T 3g06_A 170 NNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-L 236 (622)
T ss_dssp SSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-C
T ss_pred CCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccc-cCCC---CCCCCEEEccCCccCc-C
Confidence 999994 56 456899999999999994 5543 4799999999999984 4433 4789999999999995 5
Q ss_pred CcccccCcCCcEEEeecCccCCCCCCCcCCCCCcceeeccCceeeccCCcccccccccceEEecccCCCCCCCCCccccc
Q 005278 247 PSNIQNLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSLADNQFQGPVPKSFGSLISLESLDLSRNNLSGEIPKNFSAQS 326 (704)
Q Consensus 247 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~ 326 (704)
| ..+++|+.|++++|+|+ .+|. .+++|+.|+|++|+|+ .+|..+..+++|+.|+|++|++++..|..+..+.
T Consensus 237 p---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 237 P---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp C---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred C---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 5 45688999999999999 5665 6789999999999999 7899999999999999999999988887655444
No 312
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=4.6e-31 Score=287.97 Aligned_cols=310 Identities=21% Similarity=0.192 Sum_probs=247.4
Q ss_pred CCCCCCEEecCCCcCcccCCcccc-CCC----CCCEEeccCccccc----cCchhhcCCCCCCEEecccccCCCcccchh
Q 005278 4 MLPNLKYLTLFDNKLSGTIPNSIT-NAS----KLIMLDLSSNSFSG----LIPNTFGNLGSLQVLSLAYNYLMTESSAAK 74 (704)
Q Consensus 4 ~l~~l~~L~l~~~~i~~~~~~~~~-~l~----~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~ 74 (704)
.+++|++|+|++|.+++..+..+. .++ +|++|+|++|.+++ ..+..|..+++|++|+|++|.++......
T Consensus 54 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~- 132 (461)
T 1z7x_W 54 VNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQL- 132 (461)
T ss_dssp TCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHH-
T ss_pred hCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHH-
Confidence 468999999999999865444333 355 79999999999995 45888999999999999999987654332
Q ss_pred hccccc-CCCCCCCcEEEccCCCCcccCC----hhhhhcccccceEEecCCcccccCChhhhc-----CCCCCEEEccCC
Q 005278 75 WNFLSS-LTNCRNLTVLGLASNPLRGILP----PLIGNFSASLQEFYAYGCKLRGNIPQEIGN-----LSGMIVFDLNGC 144 (704)
Q Consensus 75 ~~~~~~-~~~l~~L~~L~L~~n~i~~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~L~~n 144 (704)
+... +...++|++|+|++|++++... ..+..+ ++|++|++++|.++...+..+.. .++|++|++++|
T Consensus 133 --l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 209 (461)
T 1z7x_W 133 --LCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAK-PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC 209 (461)
T ss_dssp --HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHC-TTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTS
T ss_pred --HHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhC-CCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCC
Confidence 2222 3346789999999999997654 333443 48999999999998765555543 679999999999
Q ss_pred cCccc----cChhhcCCCCcCeeeccCcccCCCC-----CccccCCCCCCEEEcCCCcCCcc----CCccccCcCCCCEE
Q 005278 145 DLNGT----IPTAVGRLRRLQGLYLHGNKLQGSI-----PYDLCHLEGLSELNLNGNKLCGH----VPPCLASLTSLRRL 211 (704)
Q Consensus 145 ~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~-----~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L 211 (704)
.++.. ++..+..+++|++|++++|++++.. +..+..+++|++|++++|.+++. ++..+..+++|+.|
T Consensus 210 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 289 (461)
T 1z7x_W 210 GVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKEL 289 (461)
T ss_dssp CCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEE
T ss_pred CCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceE
Confidence 99864 5778888999999999999988532 22233589999999999999954 56677789999999
Q ss_pred EecCccCCCCCCCcccC-----CccccEEEecCcccCCC----CCcccccCcCCcEEEeecCccCCCCCCCcCC-----C
Q 005278 212 HLGSNKLTSTMPSSFGS-----LEYVLYINLSANSLNGS----LPSNIQNLKVLTNLDLSRNQLSGDIPTTIGG-----L 277 (704)
Q Consensus 212 ~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~N~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----l 277 (704)
++++|.+++..+..+.. .++|++|++++|.+++. ++..+..+++|+.|++++|++++..+..+.. .
T Consensus 290 ~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~ 369 (461)
T 1z7x_W 290 SLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPG 369 (461)
T ss_dssp ECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTT
T ss_pred ECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCC
Confidence 99999987544333332 36999999999999865 4566777899999999999998655544442 6
Q ss_pred CCcceeeccCceeec----cCCcccccccccceEEecccCCCCC
Q 005278 278 ENLETLSLADNQFQG----PVPKSFGSLISLESLDLSRNNLSGE 317 (704)
Q Consensus 278 ~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~l~~N~l~~~ 317 (704)
++|+.|+|++|.+++ .+|..+..+++|++|++++|++++.
T Consensus 370 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 370 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp CCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred CceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 799999999999996 7888899999999999999999753
No 313
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=9.3e-30 Score=261.91 Aligned_cols=251 Identities=20% Similarity=0.232 Sum_probs=186.4
Q ss_pred hhcCCCCCCEEecccccCCCcccchhhcccccCCCCCCCcEEEccCCCCc-ccCChhhh-------hcccccceEEecCC
Q 005278 49 TFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTNCRNLTVLGLASNPLR-GILPPLIG-------NFSASLQEFYAYGC 120 (704)
Q Consensus 49 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~-------~~~~~L~~L~l~~n 120 (704)
.++..++|++|++++|.+ .++.. +... |++|+|++|++. ...|..+. .+ ++|++|++++|
T Consensus 38 ~~~~~~~L~~l~l~~n~l-~~p~~--------~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l-~~L~~L~L~~n 105 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE-ADLGQ--------FTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGI-SGLQELTLENL 105 (312)
T ss_dssp EEEEEEECTTHHHHCCTT-CCCHH--------HHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTT-SCCCEEEEEEE
T ss_pred EEccCCCceeEeeccccc-ccHHH--------HHHH--HhhcccccccccCCCcCHHHHHHHHHhcCc-CCccEEEccCC
Confidence 345566677777777766 33321 1111 666677777663 33444443 23 36777777777
Q ss_pred cccccCChhh--hcCCCCCEEEccCCcCccccChhhcCC-----CCcCeeeccCcccCCCCCccccCCCCCCEEEcCCCc
Q 005278 121 KLRGNIPQEI--GNLSGMIVFDLNGCDLNGTIPTAVGRL-----RRLQGLYLHGNKLQGSIPYDLCHLEGLSELNLNGNK 193 (704)
Q Consensus 121 ~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 193 (704)
++++.+|..+ ..+++|++|+|++|.+++. |..++.+ ++|++|+|++|++++..|..+..+++|++|+|++|+
T Consensus 106 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 184 (312)
T 1wwl_A 106 EVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP 184 (312)
T ss_dssp BCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCT
T ss_pred cccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCC
Confidence 7777777765 7888888888888888866 7777776 888888888888887777888888888888888888
Q ss_pred CCcc--CCccc--cCcCCCCEEEecCccCCCC---CCCcccCCccccEEEecCcccCCCCC-cccccCcCCcEEEeecCc
Q 005278 194 LCGH--VPPCL--ASLTSLRRLHLGSNKLTST---MPSSFGSLEYVLYINLSANSLNGSLP-SNIQNLKVLTNLDLSRNQ 265 (704)
Q Consensus 194 l~~~--~~~~~--~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~n~ 265 (704)
+.+. .+..+ ..+++|+.|++++|.+++. ....+..+++|++|++++|.+++..| ..+..+++|+.|++++|+
T Consensus 185 l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~ 264 (312)
T 1wwl_A 185 ELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264 (312)
T ss_dssp TCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC
T ss_pred cCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc
Confidence 7754 23333 7888899999999888732 12334567889999999999887664 456678899999999999
Q ss_pred cCCCCCCCcCCCCCcceeeccCceeeccCCcccccccccceEEecccCCCCC
Q 005278 266 LSGDIPTTIGGLENLETLSLADNQFQGPVPKSFGSLISLESLDLSRNNLSGE 317 (704)
Q Consensus 266 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 317 (704)
++ .+|..+. ++|+.|+|++|++++. |. +..+++|+.|++++|++++.
T Consensus 265 l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 265 LK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred cC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 98 7777776 8899999999999865 66 88999999999999998853
No 314
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=6.2e-29 Score=255.77 Aligned_cols=257 Identities=20% Similarity=0.187 Sum_probs=185.1
Q ss_pred cccCCCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhh-cccccCCCCCCCcEEEccCCCCcccCCh
Q 005278 25 SITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKW-NFLSSLTNCRNLTVLGLASNPLRGILPP 103 (704)
Q Consensus 25 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~ 103 (704)
.+.+.++|++|++++|.+ .+|..+... |++|+|++|.+......... .-...+.++++|++|+|++|++++..|.
T Consensus 38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 345566777777777777 345544443 77777777777543322100 0000011567777777777777776666
Q ss_pred hh--hhcccccceEEecCCcccccCChhhhcC-----CCCCEEEccCCcCccccChhhcCCCCcCeeeccCcccCCC--C
Q 005278 104 LI--GNFSASLQEFYAYGCKLRGNIPQEIGNL-----SGMIVFDLNGCDLNGTIPTAVGRLRRLQGLYLHGNKLQGS--I 174 (704)
Q Consensus 104 ~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~ 174 (704)
.+ ..+ ++|++|++++|++++. |..++.+ ++|++|+|++|.+.+..+..|+.+++|++|+|++|++.+. .
T Consensus 114 ~~~~~~l-~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 191 (312)
T 1wwl_A 114 PLLEATG-PDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191 (312)
T ss_dssp CSSSCCS-CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHH
T ss_pred HHHHhcC-CCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHH
Confidence 55 333 4677777777777766 6777766 8888888888888877778888888888888888887643 2
Q ss_pred Cccc--cCCCCCCEEEcCCCcCCcc---CCccccCcCCCCEEEecCccCCCCCC-CcccCCccccEEEecCcccCCCCCc
Q 005278 175 PYDL--CHLEGLSELNLNGNKLCGH---VPPCLASLTSLRRLHLGSNKLTSTMP-SSFGSLEYVLYINLSANSLNGSLPS 248 (704)
Q Consensus 175 ~~~l--~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~ 248 (704)
+..+ ..+++|++|+|++|++++. ....+..+++|+.|++++|.+++..| ..+..+++|++|++++|.++ .+|.
T Consensus 192 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~ 270 (312)
T 1wwl_A 192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPK 270 (312)
T ss_dssp HHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCS
T ss_pred HHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhh
Confidence 3333 7788899999999988831 22344577889999999999887664 45667888999999999988 6777
Q ss_pred ccccCcCCcEEEeecCccCCCCCCCcCCCCCcceeeccCceeec
Q 005278 249 NIQNLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSLADNQFQG 292 (704)
Q Consensus 249 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 292 (704)
.+. ++|+.|++++|++++. |. +..+++|+.|+|++|++++
T Consensus 271 ~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 271 GLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred hcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 666 7899999999999855 65 8889999999999998875
No 315
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=3.5e-29 Score=258.19 Aligned_cols=246 Identities=21% Similarity=0.217 Sum_probs=156.9
Q ss_pred CCCCCCEEecCCCcCcccCCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccCCC
Q 005278 4 MLPNLKYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTN 83 (704)
Q Consensus 4 ~l~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~ 83 (704)
.+++|+.|+|++|.+++..|..|.++++|++|+|++|.+++..+ |..+++|++|+|++|.++.++ .
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~------------~ 97 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL------------V 97 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE------------E
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc------------C
Confidence 46799999999999998888899999999999999999997765 999999999999999987643 3
Q ss_pred CCCCcEEEccCCCCcccCChhhhhcccccceEEecCCcccccCChhhhcCCCCCEEEccCCcCccccChhh-cCCCCcCe
Q 005278 84 CRNLTVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNGTIPTAV-GRLRRLQG 162 (704)
Q Consensus 84 l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~ 162 (704)
.++|++|++++|++.+..+..+ ++|++|++++|++++..+..++.+++|++|+|++|.+++..+..+ ..+++|++
T Consensus 98 ~~~L~~L~l~~n~l~~~~~~~~----~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~ 173 (317)
T 3o53_A 98 GPSIETLHAANNNISRVSCSRG----QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173 (317)
T ss_dssp CTTCCEEECCSSCCSEEEECCC----SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCE
T ss_pred CCCcCEEECCCCccCCcCcccc----CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCE
Confidence 4899999999999986544321 245666666666655555555555555555555555554444443 24555555
Q ss_pred eeccCcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCccc
Q 005278 163 LYLHGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSL 242 (704)
Q Consensus 163 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 242 (704)
|+|++|+|++. + ....+++|++|+|++|++++ +|..+..+++|+.|++++|.++
T Consensus 174 L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~----------------------- 227 (317)
T 3o53_A 174 LNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV----------------------- 227 (317)
T ss_dssp EECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-----------------------
T ss_pred EECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-----------------------
Confidence 55555555532 1 12234555555555555552 2223444455555555555544
Q ss_pred CCCCCcccccCcCCcEEEeecCccC-CCCCCCcCCCCCcceeeccCc-eeeccCC
Q 005278 243 NGSLPSNIQNLKVLTNLDLSRNQLS-GDIPTTIGGLENLETLSLADN-QFQGPVP 295 (704)
Q Consensus 243 ~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n-~l~~~~p 295 (704)
.+|..+..+++|+.|++++|++. +.++..+..+++|+.|++++| .+++..|
T Consensus 228 --~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 228 --LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp --EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred --chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 33444455555555555555555 445555556666666666633 3444443
No 316
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=1e-28 Score=269.47 Aligned_cols=236 Identities=22% Similarity=0.223 Sum_probs=168.3
Q ss_pred CCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccCCCCCCCcEEEccCCCCcccCChhhhhc
Q 005278 29 ASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTNCRNLTVLGLASNPLRGILPPLIGNF 108 (704)
Q Consensus 29 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~ 108 (704)
.++|++|+|++|.++++.|..|.++++|++|+|++|.++.... +..+++|++|+|++|.+++..+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---------l~~l~~L~~L~Ls~N~l~~l~~------ 97 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---------LESLSTLRTLDLNNNYVQELLV------ 97 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---------CTTCTTCCEEECCSSEEEEEEE------
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---------cccCCCCCEEEecCCcCCCCCC------
Confidence 3478888888888888777888888888888888888765331 6777888888888887764321
Q ss_pred ccccceEEecCCcccccCChhhhcCCCCCEEEccCCcCccccChhhcCCCCcCeeeccCcccCCCCCccccCCCCCCEEE
Q 005278 109 SASLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNGTIPTAVGRLRRLQGLYLHGNKLQGSIPYDLCHLEGLSELN 188 (704)
Q Consensus 109 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 188 (704)
.++|++|++++|.+.+..+. .+++|+.|+|++|.+++..|..+..+++|++|+
T Consensus 98 ------------------------~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 150 (487)
T 3oja_A 98 ------------------------GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD 150 (487)
T ss_dssp ------------------------CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEE
T ss_pred ------------------------CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEE
Confidence 14566666666666544432 245666666666666665566666666677777
Q ss_pred cCCCcCCccCCcccc-CcCCCCEEEecCccCCCCCCCcccCCccccEEEecCcccCCCCCcccccCcCCcEEEeecCccC
Q 005278 189 LNGNKLCGHVPPCLA-SLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLNGSLPSNIQNLKVLTNLDLSRNQLS 267 (704)
Q Consensus 189 L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~ 267 (704)
|++|.+++..|..+. .+++|+.|+|++|.+++.. .+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|+++
T Consensus 151 Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~ 227 (487)
T 3oja_A 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV 227 (487)
T ss_dssp CTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC
T ss_pred CCCCCCCCcChHHHhhhCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc
Confidence 777776665555554 5667777777777776442 23346777777777777774 3444778888888888888888
Q ss_pred CCCCCCcCCCCCcceeeccCceee-ccCCcccccccccceEEec
Q 005278 268 GDIPTTIGGLENLETLSLADNQFQ-GPVPKSFGSLISLESLDLS 310 (704)
Q Consensus 268 ~~~~~~~~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~l~ 310 (704)
.+|..+..+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus 228 -~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 228 -LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp -EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred -ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 46777888899999999999988 6777888888888888886
No 317
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=99.95 E-value=7e-29 Score=274.35 Aligned_cols=185 Identities=17% Similarity=0.112 Sum_probs=130.7
Q ss_pred cccccCceEEEEEE-ECCCCEEEEEEeeccc----------hhhhHHHHHHHHHHHhc-CCCCCceEEeeeeeCCeEEEE
Q 005278 422 LLGTGSFGSVYKGT-LFDGTNVAIKVFNLQL----------ERASRSFDSECEILRSI-RHRNLIKIISNCCNIDFKALV 489 (704)
Q Consensus 422 ~ig~G~~g~V~~~~-~~~~~~vavK~~~~~~----------~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv 489 (704)
..+.|+.|.+..++ ..-|+.+|||++.... +...++|.+|+++|+++ .|+||+++++++.+....|||
T Consensus 241 ~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLV 320 (569)
T 4azs_A 241 QPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLV 320 (569)
T ss_dssp C-C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEE
T ss_pred ccccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEE
Confidence 35667777666654 3468999999997542 22345799999999999 799999999999999999999
Q ss_pred EeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCC
Q 005278 490 LEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGD 569 (704)
Q Consensus 490 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~ 569 (704)
|||++||+|.+++.+.+. ++.. +|+.||+.||+|+ |++|||||||||+|||+++++.+||+|||+|+......
T Consensus 321 MEyv~G~~L~d~i~~~~~-l~~~---~I~~QIl~AL~yl---H~~GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~~ 393 (569)
T 4azs_A 321 MEKLPGRLLSDMLAAGEE-IDRE---KILGSLLRSLAAL---EKQGFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQDC 393 (569)
T ss_dssp EECCCSEEHHHHHHTTCC-CCHH---HHHHHHHHHHHHH---HHTTCEESCCCGGGEEECTTSCEEECCCTTEESCC---
T ss_pred EecCCCCcHHHHHHhCCC-CCHH---HHHHHHHHHHHHH---HHCCceeccCchHhEEECCCCCEEEeecccCeeCCCCC
Confidence 999999999999986543 5543 5899999999999 55889999999999999999999999999998764432
Q ss_pred CcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCC
Q 005278 570 DSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKP 616 (704)
Q Consensus 570 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p 616 (704)
. .....+||++|||||++.+. +..++|+||+|++++++.++..|
T Consensus 394 ~--~~~t~vGTp~YmAPE~l~g~-~~~~~d~~s~g~~~~~l~~~~~~ 437 (569)
T 4azs_A 394 S--WPTNLVQSFFVFVNELFAEN-KSWNGFWRSAPVHPFNLPQPWSN 437 (569)
T ss_dssp C--CSHHHHHHHHHHHHHHC------------------CCCCTTHHH
T ss_pred c--cccCceechhhccHHHhCCC-CCCcccccccccchhhhccccch
Confidence 2 23446799999999998754 56789999999999888776544
No 318
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=4.6e-28 Score=264.32 Aligned_cols=237 Identities=22% Similarity=0.211 Sum_probs=159.9
Q ss_pred CCCCCCEEecCCCcCcccCCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccCCC
Q 005278 4 MLPNLKYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTN 83 (704)
Q Consensus 4 ~l~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~ 83 (704)
.+++|+.|+|++|.+++..|..|.++++|+.|+|++|.+++..+ |..+++|++|+|++|.++.++ .
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~------------~ 97 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL------------V 97 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE------------E
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC------------C
Confidence 45689999999999998888999999999999999999998766 999999999999999988643 3
Q ss_pred CCCCcEEEccCCCCcccCChhhhhcccccceEEecCCcccccCChhhhcCCCCCEEEccCCcCccccChhhc-CCCCcCe
Q 005278 84 CRNLTVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNGTIPTAVG-RLRRLQG 162 (704)
Q Consensus 84 l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~ 162 (704)
.++|++|+|++|.+.+..+..+ ++|++|+|++|.+++..|..++++++|++|+|++|.+++..|..+. .+++|+.
T Consensus 98 ~~~L~~L~L~~N~l~~~~~~~l----~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~ 173 (487)
T 3oja_A 98 GPSIETLHAANNNISRVSCSRG----QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173 (487)
T ss_dssp CTTCCEEECCSSCCCCEEECCC----SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCE
T ss_pred CCCcCEEECcCCcCCCCCcccc----CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccE
Confidence 3899999999999997654322 3466666666666666666666666666666666666655555554 5666666
Q ss_pred eeccCcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCccc
Q 005278 163 LYLHGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSL 242 (704)
Q Consensus 163 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 242 (704)
|+|++|.|++. | .+..+++|+.|+|++|.+++. |..+..+++|+.|+|++|.+++ +|..+.
T Consensus 174 L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~--------------- 234 (487)
T 3oja_A 174 LNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALR--------------- 234 (487)
T ss_dssp EECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCC---------------
T ss_pred EecCCCccccc-c-ccccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhc---------------
Confidence 66666666533 1 222355566666666665532 2235555555555555555552 333444
Q ss_pred CCCCCcccccCcCCcEEEeecCccC-CCCCCCcCCCCCcceeecc
Q 005278 243 NGSLPSNIQNLKVLTNLDLSRNQLS-GDIPTTIGGLENLETLSLA 286 (704)
Q Consensus 243 ~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~ 286 (704)
.+++|+.|++++|++. +.+|..+..++.|+.++++
T Consensus 235 ---------~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 235 ---------FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp ---------CCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred ---------cCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 4445555555555554 3444455556666666654
No 319
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=6.1e-26 Score=252.39 Aligned_cols=250 Identities=26% Similarity=0.291 Sum_probs=211.7
Q ss_pred CCCCCEEecCCCcCcccCCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccCCCC
Q 005278 5 LPNLKYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTNC 84 (704)
Q Consensus 5 l~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~l 84 (704)
.++|+.|+|++|+|+ .+|. .+++|++|+|++|.++++.. .+++|++|+|++|.++.++. .+
T Consensus 60 ~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~~-----------~l 120 (622)
T 3g06_A 60 PAHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLTHLPA-----------LP 120 (622)
T ss_dssp CTTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSCCCCCCCC-----------CC
T ss_pred CCCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCCcCCCCCC-----------CC
Confidence 368999999999999 5666 67999999999999996543 78999999999999988542 46
Q ss_pred CCCcEEEccCCCCcccCChhhhhcccccceEEecCCcccccCChhhhcCCCCCEEEccCCcCccccChhhcCCCCcCeee
Q 005278 85 RNLTVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNGTIPTAVGRLRRLQGLY 164 (704)
Q Consensus 85 ~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 164 (704)
++|++|+|++|+++. +|.. .++|++|++++|++++. |. .+++|+.|++++|.++. +| ..+++|+.|+
T Consensus 121 ~~L~~L~L~~N~l~~-lp~~----l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~ 187 (622)
T 3g06_A 121 SGLCKLWIFGNQLTS-LPVL----PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELS 187 (622)
T ss_dssp TTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEE
T ss_pred CCcCEEECCCCCCCc-CCCC----CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEE
Confidence 899999999999996 4433 26899999999999854 33 45789999999999995 55 5679999999
Q ss_pred ccCcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCcccCC
Q 005278 165 LHGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLNG 244 (704)
Q Consensus 165 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 244 (704)
+++|+|++ +|.. +++|+.|++++|.++ .+|.. +++|+.|++++|.|++ +| ..+++|+.|++++|.++
T Consensus 188 Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~- 254 (622)
T 3g06_A 188 VSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT- 254 (622)
T ss_dssp CCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-
T ss_pred CCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-
Confidence 99999994 5543 478999999999999 55543 4789999999999996 44 45689999999999999
Q ss_pred CCCcccccCcCCcEEEeecCccCCCCCCCcCCCCCcceeeccCceeeccCCcccccccc
Q 005278 245 SLPSNIQNLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSLADNQFQGPVPKSFGSLIS 303 (704)
Q Consensus 245 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 303 (704)
.+|. .+++|+.|+|++|+|+ .+|..+..+++|+.|+|++|++++..|..+..+++
T Consensus 255 ~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~~ 309 (622)
T 3g06_A 255 SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITS 309 (622)
T ss_dssp CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHHH
T ss_pred cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhccc
Confidence 4555 6788999999999999 78999999999999999999999988888776653
No 320
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=4.1e-26 Score=230.55 Aligned_cols=209 Identities=23% Similarity=0.270 Sum_probs=163.3
Q ss_pred ccceEEecCCcccccCChhhhcCCCCCEEEccCCcCccccChhhcCCCCcCeeeccCcccCCCCCccccCCCCCCEEEcC
Q 005278 111 SLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNGTIPTAVGRLRRLQGLYLHGNKLQGSIPYDLCHLEGLSELNLN 190 (704)
Q Consensus 111 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 190 (704)
+|++|++++|++++..+..+.++++|++|+|++|.+....+..|..+++|++|+|++|++++..+..+.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 56666666666666666677777888888888888876666778888888888888888886666778888888888888
Q ss_pred CCcCCccCCccccCcCCCCEEEecCccCCCC-CCCcccCCccccEEEecCcccCCCCCcccccCcCCc----EEEeecCc
Q 005278 191 GNKLCGHVPPCLASLTSLRRLHLGSNKLTST-MPSSFGSLEYVLYINLSANSLNGSLPSNIQNLKVLT----NLDLSRNQ 265 (704)
Q Consensus 191 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~----~L~l~~n~ 265 (704)
+|.+++..+..+..+++|+.|++++|.+++. +|..+..+++|++|++++|.+++..+..+..+++|+ .|++++|+
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 8888866665678888888888888888764 477888888888888888888877777777777777 88999999
Q ss_pred cCCCCCCCcCCCCCcceeeccCceeeccCCcccccccccceEEecccCCCCCCCC
Q 005278 266 LSGDIPTTIGGLENLETLSLADNQFQGPVPKSFGSLISLESLDLSRNNLSGEIPK 320 (704)
Q Consensus 266 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 320 (704)
+++..+..+. ..+|+.|++++|++++..+..+..+++|+.|++++|++.+..|.
T Consensus 189 l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 189 MNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp CCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred ccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence 9855554444 45899999999999876666778899999999999999877653
No 321
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=2.9e-26 Score=230.86 Aligned_cols=163 Identities=26% Similarity=0.267 Sum_probs=80.8
Q ss_pred hhcCCCCCEEEccCCcCccccChhhcCCCCcCeeeccCcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCC
Q 005278 130 IGNLSGMIVFDLNGCDLNGTIPTAVGRLRRLQGLYLHGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLR 209 (704)
Q Consensus 130 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 209 (704)
+..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..+..+++|++|++++|++++..+..+..+++|+
T Consensus 81 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 160 (272)
T 3rfs_A 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLT 160 (272)
T ss_dssp GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCC
Confidence 34445555555555555544444455555555555555555544444444455555555555555443333444444455
Q ss_pred EEEecCccCCCCCCCcccCCccccEEEecCcccCCCCCcccccCcCCcEEEeecCccCCCCCCCcCCCCCcceeeccCce
Q 005278 210 RLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLNGSLPSNIQNLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSLADNQ 289 (704)
Q Consensus 210 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 289 (704)
.|++++|.+++..+.. +..+++|+.|++++|++++..+..+..+++|+.|++++|.
T Consensus 161 ~L~l~~n~l~~~~~~~------------------------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 161 ELDLSYNQLQSLPEGV------------------------FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp EEECCSSCCCCCCTTT------------------------TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCCcCccCHHH------------------------hcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence 5555554444433333 4444445555555555554444444555555555555555
Q ss_pred eeccCCcccccccccceEEecccCCCCCCCCCcc
Q 005278 290 FQGPVPKSFGSLISLESLDLSRNNLSGEIPKNFS 323 (704)
Q Consensus 290 l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~ 323 (704)
+.+ .+++|+.++++.|.++|.+|..+.
T Consensus 217 ~~~-------~~~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 217 WDC-------TCPGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp BCC-------CTTTTHHHHHHHHHTGGGBBCTTS
T ss_pred ccc-------cCcHHHHHHHHHHhCCCcccCccc
Confidence 442 233455555555555555555443
No 322
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=1.8e-25 Score=225.78 Aligned_cols=224 Identities=23% Similarity=0.256 Sum_probs=165.7
Q ss_pred CEEecCCCcCcccCCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccCCCCCCCc
Q 005278 9 KYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTNCRNLT 88 (704)
Q Consensus 9 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~l~~L~ 88 (704)
...+..+.+++ .+|..+. ++|++|+|++|.++++.+..|.++++|++|+|++|.++.+.... |.++++|+
T Consensus 10 ~~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-------~~~l~~L~ 79 (276)
T 2z62_A 10 ITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA-------YQSLSHLS 79 (276)
T ss_dssp TEEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTT-------TTTCTTCC
T ss_pred ceEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHH-------ccCCcCCC
Confidence 34666777777 5676554 57888888888888887778888888888888888887765443 77788888
Q ss_pred EEEccCCCCcccCChhhhhcccccceEEecCCcccccCChhhhcCCCCCEEEccCCcCccccChhhcCCCCcCeeeccCc
Q 005278 89 VLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNGTIPTAVGRLRRLQGLYLHGN 168 (704)
Q Consensus 89 ~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 168 (704)
+|+|++|++.+.. +..+.++++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 80 ~L~L~~n~l~~~~-------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 134 (276)
T 2z62_A 80 TLILTGNPIQSLA-------------------------LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134 (276)
T ss_dssp EEECTTCCCCEEC-------------------------TTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS
T ss_pred EEECCCCccCccC-------------------------hhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCC
Confidence 8888888877443 345566677777777777777655556777777777777777
Q ss_pred ccCCC-CCccccCCCCCCEEEcCCCcCCccCCccccCcCCCC----EEEecCccCCCCCCCcccCCccccEEEecCcccC
Q 005278 169 KLQGS-IPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLR----RLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLN 243 (704)
Q Consensus 169 ~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~----~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 243 (704)
++++. +|..+..+++|++|+|++|++++..+..+..+++|+ .|++++|.+++..+..+. ..+|+.|++++|.++
T Consensus 135 ~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~ 213 (276)
T 2z62_A 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLK 213 (276)
T ss_dssp CCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCS
T ss_pred ccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCcee
Confidence 77753 477777777888888888887766666666666666 788888888765554444 347888888888888
Q ss_pred CCCCcccccCcCCcEEEeecCccCC
Q 005278 244 GSLPSNIQNLKVLTNLDLSRNQLSG 268 (704)
Q Consensus 244 ~~~~~~~~~l~~L~~L~l~~n~l~~ 268 (704)
+..+..+..+++|+.|++++|++.+
T Consensus 214 ~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 214 SVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred ecCHhHhcccccccEEEccCCcccc
Confidence 6666667888888888888888874
No 323
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=6.8e-25 Score=220.63 Aligned_cols=184 Identities=30% Similarity=0.335 Sum_probs=110.9
Q ss_pred CCCEEEccCCcCccccChhhcCCCCcCeeeccCcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEec
Q 005278 135 GMIVFDLNGCDLNGTIPTAVGRLRRLQGLYLHGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLG 214 (704)
Q Consensus 135 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 214 (704)
+|++|+|++|.+....+..|.++++|++|+|++|+++...+..|..+++|++|+|++|++++..+..+..+++|+.|+++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence 45555555555554444455555555555555555553333344555555555555555554444455555666666666
Q ss_pred CccCCCCCCCcccCCccccEEEecCcccCCCCCcccccCcCCcEEEeecCccCCCCCCCcCCCCCcceeeccCceeeccC
Q 005278 215 SNKLTSTMPSSFGSLEYVLYINLSANSLNGSLPSNIQNLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSLADNQFQGPV 294 (704)
Q Consensus 215 ~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 294 (704)
+|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|++++..+..|..+++|+.|+|++|++++..
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (270)
T 2o6q_A 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP 197 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC
Confidence 66666555555666666666666666666555555666666677777777766555556666777777777777777555
Q ss_pred CcccccccccceEEecccCCCCCC
Q 005278 295 PKSFGSLISLESLDLSRNNLSGEI 318 (704)
Q Consensus 295 p~~~~~l~~L~~L~l~~N~l~~~~ 318 (704)
+..+..+++|+.|++++|++.+..
T Consensus 198 ~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 198 EGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCBCCSS
T ss_pred HHHhccccCCCEEEecCCCeeCCC
Confidence 555667777777777777776543
No 324
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=1.6e-24 Score=217.98 Aligned_cols=203 Identities=28% Similarity=0.326 Sum_probs=143.3
Q ss_pred CCCEEecCCCcCcccCCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccCCCCCC
Q 005278 7 NLKYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTNCRN 86 (704)
Q Consensus 7 ~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~l~~ 86 (704)
+.+.+++++++++ .+|..+. ++|++|+|++|.++++.+..|.++++|++|+|++|.++.++... |.++++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~-------~~~l~~ 86 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGI-------FKELKN 86 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTT-------TSSCTT
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhh-------hcCCCC
Confidence 4567777777777 4565444 56777777777777776667777777777777777777655443 666777
Q ss_pred CcEEEccCCCCcccCChhhhhcccccceEEecCCcccccCChhhhcCCCCCEEEccCCcCccccChhhcCCCCcCeeecc
Q 005278 87 LTVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNGTIPTAVGRLRRLQGLYLH 166 (704)
Q Consensus 87 L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 166 (704)
|++|+|++|++... .+..+.++++|++|+|++|.++...+..|..+++|++|+|+
T Consensus 87 L~~L~l~~n~l~~~-------------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 141 (270)
T 2o6q_A 87 LETLWVTDNKLQAL-------------------------PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLG 141 (270)
T ss_dssp CCEEECCSSCCCCC-------------------------CTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCcCCcC-------------------------CHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECC
Confidence 77777777776643 33445666677777777777776666667777777777777
Q ss_pred CcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCcccCC
Q 005278 167 GNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLNG 244 (704)
Q Consensus 167 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 244 (704)
+|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|.+..
T Consensus 142 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 142 YNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 777775555557777777777777777776555667777777777777777776666667777777888888777763
No 325
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=2.3e-25 Score=224.24 Aligned_cols=203 Identities=28% Similarity=0.288 Sum_probs=168.8
Q ss_pred cceEEecCCcccccCChhhhcCCCCCEEEccCCcCccccChhhcCCCCcCeeeccCcccCCCCCccccCCCCCCEEEcCC
Q 005278 112 LQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNGTIPTAVGRLRRLQGLYLHGNKLQGSIPYDLCHLEGLSELNLNG 191 (704)
Q Consensus 112 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 191 (704)
+..+.+..+.+... ..+..+++|+.|++++|.+.. + ..+..+++|++|++++|++++. ..+..+++|++|+|++
T Consensus 21 l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 21 TIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTT
T ss_pred HHHHHhcCcccccc--cccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCC
Confidence 34445555554433 235667788888888888773 2 3477888888888888888742 4788888899999999
Q ss_pred CcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCcccCCCCCcccccCcCCcEEEeecCccCCCCC
Q 005278 192 NKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLNGSLPSNIQNLKVLTNLDLSRNQLSGDIP 271 (704)
Q Consensus 192 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 271 (704)
|.+++..+..+..+++|+.|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 174 (272)
T 3rfs_A 95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE 174 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH
Confidence 98887777778888999999999999988777788899999999999999987777778999999999999999998778
Q ss_pred CCcCCCCCcceeeccCceeeccCCcccccccccceEEecccCCCCCCCC
Q 005278 272 TTIGGLENLETLSLADNQFQGPVPKSFGSLISLESLDLSRNNLSGEIPK 320 (704)
Q Consensus 272 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 320 (704)
..++.+++|+.|++++|++++..|..+..+++|+.|++++|++.+..|.
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 223 (272)
T 3rfs_A 175 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 223 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred HHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcH
Confidence 8889999999999999999988888899999999999999999988774
No 326
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=2.9e-24 Score=217.84 Aligned_cols=132 Identities=27% Similarity=0.253 Sum_probs=66.7
Q ss_pred CCCCEEEccCCcCccccChhhcCCCCcCeeeccCcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEe
Q 005278 134 SGMIVFDLNGCDLNGTIPTAVGRLRRLQGLYLHGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHL 213 (704)
Q Consensus 134 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 213 (704)
++|++|+|++|.+. .+|..+..+++|++|+|++|+|++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|
T Consensus 77 ~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 155 (290)
T 1p9a_G 77 PVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155 (290)
T ss_dssp TTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEEC
Confidence 34444444444444 33334444444444555555544333344445555555555555555443444445555555555
Q ss_pred cCccCCCCCCCcccCCccccEEEecCcccCCCCCcccccCcCCcEEEeecCccC
Q 005278 214 GSNKLTSTMPSSFGSLEYVLYINLSANSLNGSLPSNIQNLKVLTNLDLSRNQLS 267 (704)
Q Consensus 214 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~ 267 (704)
++|++++..+..|..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|++.
T Consensus 156 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 156 ANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 555555444444455555555555555555 44555555556666666666664
No 327
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.92 E-value=3.2e-26 Score=240.72 Aligned_cols=231 Identities=19% Similarity=0.164 Sum_probs=152.5
Q ss_pred EEecCCCcCcccCCccccCCCCCCEEeccCccccccCc----hhhcCCC-CCCEEecccccCCCcccchhhcccccCCCC
Q 005278 10 YLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFSGLIP----NTFGNLG-SLQVLSLAYNYLMTESSAAKWNFLSSLTNC 84 (704)
Q Consensus 10 ~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~----~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~~~~~~~~l 84 (704)
.++|++|++++.+|..+...++|++|+|++|.+++..+ .+|.+++ +|++|+|++|.++...... +...+...
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~---l~~~l~~~ 78 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDE---LVQILAAI 78 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHH---HHHHHHTS
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHH---HHHHHhcc
Confidence 46788899998888877777779999999999998777 7788888 8999999999888766544 22223333
Q ss_pred -CCCcEEEccCCCCcccCChhhhhc----ccccceEEecCCcccccCChhhhc-----CCCCCEEEccCCcCcccc----
Q 005278 85 -RNLTVLGLASNPLRGILPPLIGNF----SASLQEFYAYGCKLRGNIPQEIGN-----LSGMIVFDLNGCDLNGTI---- 150 (704)
Q Consensus 85 -~~L~~L~L~~n~i~~~~~~~~~~~----~~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~~~---- 150 (704)
++|++|+|++|++++..+..++.. +++|++|++++|.+++..+..+.. .++|++|+|++|.++...
T Consensus 79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 158 (362)
T 3goz_A 79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL 158 (362)
T ss_dssp CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence 889999999999887777665553 146777777777777665555433 257777777777776433
Q ss_pred ChhhcCCC-CcCeeeccCcccCCCCCcccc----CC-CCCCEEEcCCCcCCcc----CCccccC-cCCCCEEEecCccCC
Q 005278 151 PTAVGRLR-RLQGLYLHGNKLQGSIPYDLC----HL-EGLSELNLNGNKLCGH----VPPCLAS-LTSLRRLHLGSNKLT 219 (704)
Q Consensus 151 ~~~~~~l~-~L~~L~L~~n~l~~~~~~~l~----~l-~~L~~L~L~~n~l~~~----~~~~~~~-l~~L~~L~l~~n~l~ 219 (704)
+..+..++ +|++|+|++|++++..+..++ .+ ++|++|+|++|.+++. ++..+.. .++|+.|+|++|.++
T Consensus 159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 33334444 777777777777655543333 33 4777777777777642 2333333 246777777777666
Q ss_pred CCCC----CcccCCccccEEEecCcccC
Q 005278 220 STMP----SSFGSLEYVLYINLSANSLN 243 (704)
Q Consensus 220 ~~~~----~~~~~l~~L~~L~l~~N~l~ 243 (704)
+..+ ..+..+++|+.|++++|.+.
T Consensus 239 ~~~~~~l~~~~~~l~~L~~L~L~~n~l~ 266 (362)
T 3goz_A 239 GPSLENLKLLKDSLKHLQTVYLDYDIVK 266 (362)
T ss_dssp CCCHHHHHHTTTTTTTCSEEEEEHHHHT
T ss_pred cHHHHHHHHHHhcCCCccEEEeccCCcc
Confidence 4433 22344455555555555533
No 328
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=2.1e-24 Score=218.86 Aligned_cols=203 Identities=22% Similarity=0.207 Sum_probs=120.6
Q ss_pred CCCCCCCcEEEccCCCCcccCChhhhhcccccceEEecCCcccccCChhhhcCCCCCEEEccCCcCccccChhhcCCCCc
Q 005278 81 LTNCRNLTVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNGTIPTAVGRLRRL 160 (704)
Q Consensus 81 ~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 160 (704)
+.++++|+++++++|+++. +|..+. +++++|+|++|.+++..+..+.++++|++|+|++|.+++..+. +.+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-LPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-CCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTC
T ss_pred ccccCCccEEECCCCCCCc-CCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcC
Confidence 3455566666666666652 232221 2455555555555555556666777777777777777644332 566677
Q ss_pred CeeeccCcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCc
Q 005278 161 QGLYLHGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSAN 240 (704)
Q Consensus 161 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 240 (704)
++|+|++|+|+ .+|..+..+++|++|+|++|++++..+..|..+++|+.|++++|++++..+..|..+++|+.|+|++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 77777777776 55666666666777777777666555556666666666666666666555555566666666666666
Q ss_pred ccCCCCCcccccCcCCcEEEeecCccCCCCCCCcCCCCCcceeeccCceee
Q 005278 241 SLNGSLPSNIQNLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSLADNQFQ 291 (704)
Q Consensus 241 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 291 (704)
++++..+..|..+++|+.|++++|+++ .+|..+..+.+|+.|+|++|++.
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 665444444555555555555555555 44544555555555555555544
No 329
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=99.92 E-value=5.5e-26 Score=249.88 Aligned_cols=185 Identities=17% Similarity=0.217 Sum_probs=144.3
Q ss_pred ccccccccCceEEEEEEECCCCEEEEEEeeccc--------hhhhHHHHHHHHHHHhcCCCCCceEEeeeeeCCeEEEEE
Q 005278 419 ECNLLGTGSFGSVYKGTLFDGTNVAIKVFNLQL--------ERASRSFDSECEILRSIRHRNLIKIISNCCNIDFKALVL 490 (704)
Q Consensus 419 ~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~--------~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 490 (704)
..+.||+|+||.||+|+ ..++.+++|+..... ....+.+.+|++++++++||||+++..++...+..++||
T Consensus 340 ~~~~LG~G~fg~Vy~~~-~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lVm 418 (540)
T 3en9_A 340 PEHLIGKGAEADIKRDS-YLDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIMM 418 (540)
T ss_dssp --------CCEEEEEEE-CSSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEEE
T ss_pred CCCEEeeCCCEEEEEEE-ECCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEEE
Confidence 35689999999999995 457889999864322 112345899999999999999996555555777779999
Q ss_pred eccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCCC
Q 005278 491 EFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGDD 570 (704)
Q Consensus 491 e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~~ 570 (704)
||+++|+|.+++.. +..++.|++.|++||| +.+|+||||||+||+++. .+||+|||+++.......
T Consensus 419 E~~~ggsL~~~l~~---------~~~i~~qi~~aL~~LH---~~gIiHrDiKp~NILl~~--~~kL~DFGla~~~~~~~~ 484 (540)
T 3en9_A 419 SYINGKLAKDVIED---------NLDIAYKIGEIVGKLH---KNDVIHNDLTTSNFIFDK--DLYIIDFGLGKISNLDED 484 (540)
T ss_dssp ECCCSEEHHHHSTT---------CTHHHHHHHHHHHHHH---HTTEECTTCCTTSEEESS--SEEECCCTTCEECCCHHH
T ss_pred ECCCCCCHHHHHHH---------HHHHHHHHHHHHHHHH---HCcCccCCCCHHHEEECC--eEEEEECccCEECCCccc
Confidence 99999999999876 4679999999999995 578999999999999999 999999999998754321
Q ss_pred cc-----eeccccccccccCCcccCC--CCCCcccceeeHHHHHHHHhhCCCCCC
Q 005278 571 SV-----IQTMTIATIGYMAPEYGSE--GIISPKSDVYSYGILLMETFTRKKPTN 618 (704)
Q Consensus 571 ~~-----~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~s~Gv~l~el~tg~~p~~ 618 (704)
.. ......||+.|||||++.. ..|+..+|+||..+-..+-+.++.+|.
T Consensus 485 ~~~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY~ 539 (540)
T 3en9_A 485 KAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARYV 539 (540)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCCC
T ss_pred cccchhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccC
Confidence 11 1234579999999999876 567888999999999888888777764
No 330
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.92 E-value=3.8e-27 Score=250.39 Aligned_cols=252 Identities=17% Similarity=0.190 Sum_probs=147.4
Q ss_pred chhhcCCCCCCEEecccccCCCcccchhhcccccCCCCCCCcEEEccCCCC---cccCChhhhhcccccceEEecCCccc
Q 005278 47 PNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTNCRNLTVLGLASNPL---RGILPPLIGNFSASLQEFYAYGCKLR 123 (704)
Q Consensus 47 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i---~~~~~~~~~~~~~~L~~L~l~~n~l~ 123 (704)
+..+..+++|++|+|++|.+....... ++..+..+++|++|+|++|.+ .+.+|..+..+
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~---l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l--------------- 86 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAARW---LSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLL--------------- 86 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHH---HHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHH---------------
T ss_pred HHHHhcCCCccEEECCCCCCCHHHHHH---HHHHHHhCCCccEEeCcccccCccccchhHHHHHH---------------
Confidence 334445555555555555554433222 233344555555555555422 22333333221
Q ss_pred ccCChhhhcCCCCCEEEccCCcCcc----ccChhhcCCCCcCeeeccCcccCCCCCcccc----CC---------CCCCE
Q 005278 124 GNIPQEIGNLSGMIVFDLNGCDLNG----TIPTAVGRLRRLQGLYLHGNKLQGSIPYDLC----HL---------EGLSE 186 (704)
Q Consensus 124 ~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~----~l---------~~L~~ 186 (704)
...+..+++|++|+|++|.+.. .++..+..+++|++|+|++|.+++..+..+. .+ ++|++
T Consensus 87 ---~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~ 163 (386)
T 2ca6_A 87 ---LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRS 163 (386)
T ss_dssp ---HHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCE
T ss_pred ---HHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcE
Confidence 1233444455555555555443 2344444455555555555554422222222 12 66777
Q ss_pred EEcCCCcCC-ccCC---ccccCcCCCCEEEecCccCCC-----CCCCcccCCccccEEEecCcccC----CCCCcccccC
Q 005278 187 LNLNGNKLC-GHVP---PCLASLTSLRRLHLGSNKLTS-----TMPSSFGSLEYVLYINLSANSLN----GSLPSNIQNL 253 (704)
Q Consensus 187 L~L~~n~l~-~~~~---~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~N~l~----~~~~~~~~~l 253 (704)
|+|++|+++ ..++ ..+..+++|+.|++++|.++. ..+..+..+++|+.|+|++|.++ ..+|..+..+
T Consensus 164 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~ 243 (386)
T 2ca6_A 164 IICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 243 (386)
T ss_dssp EECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC
T ss_pred EECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccC
Confidence 777777765 2233 345566677777777777652 23336667777777777777774 4566677788
Q ss_pred cCCcEEEeecCccCCC----CCCCc--CCCCCcceeeccCceeec----cCCccc-ccccccceEEecccCCCCCCC
Q 005278 254 KVLTNLDLSRNQLSGD----IPTTI--GGLENLETLSLADNQFQG----PVPKSF-GSLISLESLDLSRNNLSGEIP 319 (704)
Q Consensus 254 ~~L~~L~l~~n~l~~~----~~~~~--~~l~~L~~L~L~~n~l~~----~~p~~~-~~l~~L~~L~l~~N~l~~~~p 319 (704)
++|+.|+|++|++++. ++..+ +.+++|+.|+|++|.+++ .+|..+ .++++|+.|++++|++++..+
T Consensus 244 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 8888888888888754 45555 348889999999999987 477777 568999999999999886543
No 331
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=1.4e-25 Score=235.72 Aligned_cols=256 Identities=21% Similarity=0.210 Sum_probs=164.2
Q ss_pred EEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccCCCCC-CCcEEEccCCCCcccCChhhhhc----
Q 005278 34 MLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTNCR-NLTVLGLASNPLRGILPPLIGNF---- 108 (704)
Q Consensus 34 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~~---- 108 (704)
.++|++|.+++.+|..+...++|++|+|++|.++..+... +...|..++ +|++|+|++|++++..+..++.+
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~---l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~ 78 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVE---LIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI 78 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHH---HHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTS
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHH---HHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhcc
Confidence 4688999999988888888888999999999998877522 334478888 89999999999998888877775
Q ss_pred ccccceEEecCCcccccCChhhhc----C-CCCCEEEccCCcCccccChhhc----C-CCCcCeeeccCcccCCCCCc--
Q 005278 109 SASLQEFYAYGCKLRGNIPQEIGN----L-SGMIVFDLNGCDLNGTIPTAVG----R-LRRLQGLYLHGNKLQGSIPY-- 176 (704)
Q Consensus 109 ~~~L~~L~l~~n~l~~~~~~~~~~----l-~~L~~L~L~~n~l~~~~~~~~~----~-l~~L~~L~L~~n~l~~~~~~-- 176 (704)
.++|++|+|++|.+++..+..+.. + ++|++|+|++|.++...+..+. . .++|++|+|++|++++..+.
T Consensus 79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 158 (362)
T 3goz_A 79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL 158 (362)
T ss_dssp CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence 246888888888887666664443 3 7788888888887765554443 3 25777777777777743332
Q ss_pred --cccCCC-CCCEEEcCCCcCCccCCcccc----Cc-CCCCEEEecCccCCCCC----CCcccC-CccccEEEecCcccC
Q 005278 177 --DLCHLE-GLSELNLNGNKLCGHVPPCLA----SL-TSLRRLHLGSNKLTSTM----PSSFGS-LEYVLYINLSANSLN 243 (704)
Q Consensus 177 --~l~~l~-~L~~L~L~~n~l~~~~~~~~~----~l-~~L~~L~l~~n~l~~~~----~~~~~~-l~~L~~L~l~~N~l~ 243 (704)
.+..++ +|++|+|++|++++..+..+. .+ ++|+.|+|++|.+++.. +..+.. .++|++|+|++|.++
T Consensus 159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 234444 777777777777655443333 33 47777777777766422 222333 235666666666665
Q ss_pred CCCC----cccccCcCCcEEEeecCccCCCC-------CCCcCCCCCcceeeccCceeec
Q 005278 244 GSLP----SNIQNLKVLTNLDLSRNQLSGDI-------PTTIGGLENLETLSLADNQFQG 292 (704)
Q Consensus 244 ~~~~----~~~~~l~~L~~L~l~~n~l~~~~-------~~~~~~l~~L~~L~L~~n~l~~ 292 (704)
+..+ ..+..+++|+.|++++|.+.+.. +..+..+++|+.||+++|++.+
T Consensus 239 ~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp CCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred cHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 4333 22234455556666655543221 1233444444444444444443
No 332
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.91 E-value=2.6e-24 Score=221.06 Aligned_cols=226 Identities=17% Similarity=0.174 Sum_probs=174.6
Q ss_pred CCCcEEEccCCCCcccCChhhhhc--ccccceEEecCCcccccCChhh--hcCCCCCEEEccCCcCccccC----hhhcC
Q 005278 85 RNLTVLGLASNPLRGILPPLIGNF--SASLQEFYAYGCKLRGNIPQEI--GNLSGMIVFDLNGCDLNGTIP----TAVGR 156 (704)
Q Consensus 85 ~~L~~L~L~~n~i~~~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~----~~~~~ 156 (704)
..++.|.+.++.+.......+... .++|++|++++|.+.+..|..+ ..+++|++|+|++|.+.+..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 356777777777654322211111 1358888888888888888877 888899999999999886544 34567
Q ss_pred CCCcCeeeccCcccCCCCCccccCCCCCCEEEcCCCcCCcc--C--CccccCcCCCCEEEecCccCCCCCCC----cccC
Q 005278 157 LRRLQGLYLHGNKLQGSIPYDLCHLEGLSELNLNGNKLCGH--V--PPCLASLTSLRRLHLGSNKLTSTMPS----SFGS 228 (704)
Q Consensus 157 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~--~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~ 228 (704)
+++|++|+|++|++++..+..+..+++|++|+|++|++.+. + +..+..+++|+.|++++|.++. .+. .+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence 88999999999999877778888999999999999987642 2 2334678899999999999873 222 2467
Q ss_pred CccccEEEecCcccCCCCCcccccC---cCCcEEEeecCccCCCCCCCcCCCCCcceeeccCceeeccCCcccccccccc
Q 005278 229 LEYVLYINLSANSLNGSLPSNIQNL---KVLTNLDLSRNQLSGDIPTTIGGLENLETLSLADNQFQGPVPKSFGSLISLE 305 (704)
Q Consensus 229 l~~L~~L~l~~N~l~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 305 (704)
+++|++|+|++|.+.+..|..+..+ ++|+.|++++|+++ .+|..+. ++|+.|+|++|++++. |. +..+++|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~ 297 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD 297 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence 7899999999999988778777776 68999999999999 6777664 7999999999999953 43 67889999
Q ss_pred eEEecccCCCC
Q 005278 306 SLDLSRNNLSG 316 (704)
Q Consensus 306 ~L~l~~N~l~~ 316 (704)
.|++++|+++.
T Consensus 298 ~L~L~~N~l~~ 308 (310)
T 4glp_A 298 NLTLDGNPFLV 308 (310)
T ss_dssp CEECSSTTTSC
T ss_pred EEECcCCCCCC
Confidence 99999999874
No 333
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=6.1e-26 Score=241.06 Aligned_cols=268 Identities=16% Similarity=0.175 Sum_probs=154.7
Q ss_pred cCCccccCCCCCCEEeccCccccccCchh----hcCCCCCCEEecccccCCCcccc---hhhcccccCCCCCCCcEEEcc
Q 005278 21 TIPNSITNASKLIMLDLSSNSFSGLIPNT----FGNLGSLQVLSLAYNYLMTESSA---AKWNFLSSLTNCRNLTVLGLA 93 (704)
Q Consensus 21 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~----~~~l~~L~~L~L~~n~i~~~~~~---~~~~~~~~~~~l~~L~~L~L~ 93 (704)
.++..+..+++|++|+|++|.+++..+.. |..+++|++|+|++|.+..+... ....+...+..+++|++|+|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 57788889999999999999999775544 77899999999999876644321 211233445789999999999
Q ss_pred CCCCccc----CChhhhhcccccceEEecCCcccccCChhhh----cC---------CCCCEEEccCCcCc-cccC---h
Q 005278 94 SNPLRGI----LPPLIGNFSASLQEFYAYGCKLRGNIPQEIG----NL---------SGMIVFDLNGCDLN-GTIP---T 152 (704)
Q Consensus 94 ~n~i~~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~----~l---------~~L~~L~L~~n~l~-~~~~---~ 152 (704)
+|+++.. ++..+..+ ++|++|+|++|.++...+..+. .+ ++|++|+|++|.++ ...+ .
T Consensus 103 ~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKH-TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHC-TTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhC-CCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 9999863 33344443 2466666666665433222222 22 55555555555554 2222 2
Q ss_pred hhcCCCCcCeeeccCcccCC-----CCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCCccc
Q 005278 153 AVGRLRRLQGLYLHGNKLQG-----SIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFG 227 (704)
Q Consensus 153 ~~~~l~~L~~L~L~~n~l~~-----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 227 (704)
.+..+++|++|+|++|+|+. ..+..+..+++|++|+|++|.++... ...++..+.
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g--------------------~~~l~~~l~ 241 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG--------------------SSALAIALK 241 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH--------------------HHHHHHHGG
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH--------------------HHHHHHHHc
Confidence 34445555555555555441 12224444445555555555543000 023333444
Q ss_pred CCccccEEEecCcccCCC----CCccc--ccCcCCcEEEeecCccCC----CCCCCc-CCCCCcceeeccCceeeccCC-
Q 005278 228 SLEYVLYINLSANSLNGS----LPSNI--QNLKVLTNLDLSRNQLSG----DIPTTI-GGLENLETLSLADNQFQGPVP- 295 (704)
Q Consensus 228 ~l~~L~~L~l~~N~l~~~----~~~~~--~~l~~L~~L~l~~n~l~~----~~~~~~-~~l~~L~~L~L~~n~l~~~~p- 295 (704)
.+++|++|+|++|.+++. ++..+ +.+++|+.|+|++|++++ .+|..+ .++++|+.|++++|++++..+
T Consensus 242 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~ 321 (386)
T 2ca6_A 242 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDV 321 (386)
T ss_dssp GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHH
T ss_pred cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhH
Confidence 445555555555554432 23344 236667777777777775 356555 457778888888888776553
Q ss_pred -ccc-ccccccceEEe
Q 005278 296 -KSF-GSLISLESLDL 309 (704)
Q Consensus 296 -~~~-~~l~~L~~L~l 309 (704)
..+ ..+++++.+++
T Consensus 322 ~~~l~~~l~~~~~~~l 337 (386)
T 2ca6_A 322 VDEIREVFSTRGRGEL 337 (386)
T ss_dssp HHHHHHHHHHHTCCEE
T ss_pred HHHHHHHhhhcCcchh
Confidence 222 23445544444
No 334
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=7.7e-24 Score=208.84 Aligned_cols=197 Identities=19% Similarity=0.161 Sum_probs=147.3
Q ss_pred cccceEEecCCcccccCChhhhcCCCCCEEEccCCc-CccccChhhcCCCCcCeeeccC-cccCCCCCccccCCCCCCEE
Q 005278 110 ASLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCD-LNGTIPTAVGRLRRLQGLYLHG-NKLQGSIPYDLCHLEGLSEL 187 (704)
Q Consensus 110 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L 187 (704)
.+|++|++++|++++..+..|.++++|++|++++|. ++.+.+..|.++++|++|++++ |++++..+..|.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 367777777777777777778888888888888886 7766666788888888888887 88876666677788888888
Q ss_pred EcCCCcCCccCCccccCcCCCC---EEEecCc-cCCCCCCCcccCCcccc-EEEecCcccCCCCCcccccCcCCcEEEee
Q 005278 188 NLNGNKLCGHVPPCLASLTSLR---RLHLGSN-KLTSTMPSSFGSLEYVL-YINLSANSLNGSLPSNIQNLKVLTNLDLS 262 (704)
Q Consensus 188 ~L~~n~l~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~-~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 262 (704)
++++|++++ +|. +..+++|+ .|++++| .+++..+..|..+++|+ .|++++|.++...+..+.. ++|+.|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 888888874 555 77777777 8888888 78766666788888888 8888888887333334444 778888888
Q ss_pred cCc-cCCCCCCCcCCC-CCcceeeccCceeeccCCcccccccccceEEeccc
Q 005278 263 RNQ-LSGDIPTTIGGL-ENLETLSLADNQFQGPVPKSFGSLISLESLDLSRN 312 (704)
Q Consensus 263 ~n~-l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N 312 (704)
+|+ +++..+..|.++ ++|+.|++++|+++ .+|.. .+++|+.|++++|
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCc
Confidence 884 775556677777 88888888888887 34443 5667777777765
No 335
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=5.1e-23 Score=204.45 Aligned_cols=179 Identities=27% Similarity=0.295 Sum_probs=109.0
Q ss_pred CCEEEccCCcCccccChhhcCCCCcCeeeccCcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecC
Q 005278 136 MIVFDLNGCDLNGTIPTAVGRLRRLQGLYLHGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGS 215 (704)
Q Consensus 136 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 215 (704)
.++++++++.++ .+|..+. ++++.|+|++|++++..+..+.++++|++|+|++|++++..+..|..+++|+.|++++
T Consensus 16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 445555555555 3343333 4556666666666655555566666666666666666655555556666666666666
Q ss_pred ccCCCCCCCcccCCccccEEEecCcccCCCCCcccccCcCCcEEEeecCccCCCCCCCcCCCCCcceeeccCceeeccCC
Q 005278 216 NKLTSTMPSSFGSLEYVLYINLSANSLNGSLPSNIQNLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSLADNQFQGPVP 295 (704)
Q Consensus 216 n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p 295 (704)
|.+++..+..|..+++|++|+|++|.+++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 66665555556666666666666666665555555666666666666666665555556666666666666666665555
Q ss_pred cccccccccceEEecccCCCCC
Q 005278 296 KSFGSLISLESLDLSRNNLSGE 317 (704)
Q Consensus 296 ~~~~~l~~L~~L~l~~N~l~~~ 317 (704)
..+..+++|+.|++++|++.+.
T Consensus 173 ~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHhCCCCCCEEEeeCCceeCC
Confidence 5666666677777777766654
No 336
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=6.2e-24 Score=218.21 Aligned_cols=227 Identities=20% Similarity=0.203 Sum_probs=176.0
Q ss_pred CCCEEecccccCCCcccchhhcccccCCCCCCCcEEEccCCCCcccCChhh--hhcccccceEEecCCcccccCC----h
Q 005278 55 SLQVLSLAYNYLMTESSAAKWNFLSSLTNCRNLTVLGLASNPLRGILPPLI--GNFSASLQEFYAYGCKLRGNIP----Q 128 (704)
Q Consensus 55 ~L~~L~L~~n~i~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~----~ 128 (704)
.++.|.+.++.+....... +. .+..+++|++|+|++|++.+..|..+ ..+ ++|++|++++|.+++..+ .
T Consensus 65 ~l~~l~l~~~~~~~~~~~~---~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-~~L~~L~Ls~n~i~~~~~~~~~~ 139 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVG---AL-RVLAYSRLKELTLEDLKITGTMPPLPLEATG-LALSSLRLRNVSWATGRSWLAEL 139 (310)
T ss_dssp CCCEEEECSCCCBHHHHHH---HH-HHHHHSCCCEEEEESCCCBSCCCCCSSSCCC-BCCSSCEEESCCCSSTTSSHHHH
T ss_pred ceeEEEEeCCcCCHHHHHH---HH-HhcccCceeEEEeeCCEeccchhhhhhhccC-CCCCEEEeecccccchhhhhHHH
Confidence 4677777777665432111 11 12234668888888888888877776 444 478888888888886555 4
Q ss_pred hhhcCCCCCEEEccCCcCccccChhhcCCCCcCeeeccCcccCCC--C--CccccCCCCCCEEEcCCCcCCccCCc----
Q 005278 129 EIGNLSGMIVFDLNGCDLNGTIPTAVGRLRRLQGLYLHGNKLQGS--I--PYDLCHLEGLSELNLNGNKLCGHVPP---- 200 (704)
Q Consensus 129 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~--~~~l~~l~~L~~L~L~~n~l~~~~~~---- 200 (704)
.+..+++|++|+|++|.+.+..+..|+.+++|++|+|++|++.+. + +..+..+++|++|+|++|+++ .++.
T Consensus 140 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~ 218 (310)
T 4glp_A 140 QQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAA 218 (310)
T ss_dssp HTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHH
T ss_pred HhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHH
Confidence 456789999999999999988888999999999999999997642 2 233467899999999999997 3333
Q ss_pred cccCcCCCCEEEecCccCCCCCCCcccCC---ccccEEEecCcccCCCCCcccccCcCCcEEEeecCccCCCCCCCcCCC
Q 005278 201 CLASLTSLRRLHLGSNKLTSTMPSSFGSL---EYVLYINLSANSLNGSLPSNIQNLKVLTNLDLSRNQLSGDIPTTIGGL 277 (704)
Q Consensus 201 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 277 (704)
.+..+++|+.|+|++|.+++..|..+..+ ++|++|++++|.++ .+|..+. ++|+.|++++|++++. |. +..+
T Consensus 219 l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l 293 (310)
T 4glp_A 219 LAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDEL 293 (310)
T ss_dssp HHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSC
T ss_pred HHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhC
Confidence 35678999999999999998878777776 69999999999999 6677664 7899999999999953 43 6788
Q ss_pred CCcceeeccCceeec
Q 005278 278 ENLETLSLADNQFQG 292 (704)
Q Consensus 278 ~~L~~L~L~~n~l~~ 292 (704)
++|+.|+|++|++++
T Consensus 294 ~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 294 PEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCSCEECSSTTTSC
T ss_pred CCccEEECcCCCCCC
Confidence 999999999999874
No 337
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=4.9e-23 Score=210.96 Aligned_cols=194 Identities=24% Similarity=0.368 Sum_probs=104.9
Q ss_pred ccCCCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccCCCCCCCcEEEccCCCCcccCChhh
Q 005278 26 ITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTNCRNLTVLGLASNPLRGILPPLI 105 (704)
Q Consensus 26 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~ 105 (704)
+..+++|++|++++|.++.+ + .+..+++|++|+|++|.++.++. +..+++|++|+|++|++.+.
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~---------~~~l~~L~~L~L~~n~l~~~----- 100 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP---------LKNLTKITELELSGNPLKNV----- 100 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG---------GTTCCSCCEEECCSCCCSCC-----
T ss_pred HHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh---------HccCCCCCEEEccCCcCCCc-----
Confidence 34555566666666655543 2 35555556666666555554321 44555555555555555421
Q ss_pred hhcccccceEEecCCcccccCChhhhcCCCCCEEEccCCcCccccChhhcCCCCcCeeeccCcccCCCCCccccCCCCCC
Q 005278 106 GNFSASLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNGTIPTAVGRLRRLQGLYLHGNKLQGSIPYDLCHLEGLS 185 (704)
Q Consensus 106 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 185 (704)
..+..+++|++|++++|.+++. + .+..+++|++|++++|++++..+ +..+++|+
T Consensus 101 ----------------------~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~ 154 (308)
T 1h6u_A 101 ----------------------SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQ 154 (308)
T ss_dssp ----------------------GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCC
T ss_pred ----------------------hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCcc
Confidence 1345555666666666665532 2 25556666666666666653322 55556666
Q ss_pred EEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCcccCCCCCcccccCcCCcEEEeecCc
Q 005278 186 ELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLNGSLPSNIQNLKVLTNLDLSRNQ 265 (704)
Q Consensus 186 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~n~ 265 (704)
+|+|++|++++. +. +..+++|+.|++++|.+++..+ +..+++|++|++++|.+.+.. .+..+++|+.|++++|+
T Consensus 155 ~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 155 YLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp EEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEE
T ss_pred EEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCe
Confidence 666666666532 22 5555666666666666653322 555556666666666555332 25555666666666666
Q ss_pred cC
Q 005278 266 LS 267 (704)
Q Consensus 266 l~ 267 (704)
++
T Consensus 229 i~ 230 (308)
T 1h6u_A 229 IT 230 (308)
T ss_dssp EE
T ss_pred ee
Confidence 65
No 338
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=1.5e-24 Score=225.95 Aligned_cols=254 Identities=19% Similarity=0.268 Sum_probs=122.2
Q ss_pred CCEEecCCCcCcccCCccccCC--CCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccCCCCC
Q 005278 8 LKYLTLFDNKLSGTIPNSITNA--SKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTNCR 85 (704)
Q Consensus 8 l~~L~l~~~~i~~~~~~~~~~l--~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~l~ 85 (704)
++.|+++++.+. +..+..+ ++++.|++++|.+++..+. +.++++|++|+|++|.+.... ++..+..++
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~------~~~~~~~~~ 118 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVST------LHGILSQCS 118 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHH------HHHHHTTBC
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHH------HHHHHhhCC
Confidence 445555555444 2334444 4555555555555544333 234455555555555443221 111244445
Q ss_pred CCcEEEccCCCCcccCChhhhhcccccceEEecCCcccccCChhhhcCCCCCEEEccCC-cCccc-cChhhcCCCCcCee
Q 005278 86 NLTVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGC-DLNGT-IPTAVGRLRRLQGL 163 (704)
Q Consensus 86 ~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L 163 (704)
+|++|+|++|++++ ..+..++.+++|++|+|++| .+++. ++..+..+++|++|
T Consensus 119 ~L~~L~L~~~~l~~-------------------------~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L 173 (336)
T 2ast_B 119 KLQNLSLEGLRLSD-------------------------PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL 173 (336)
T ss_dssp CCSEEECTTCBCCH-------------------------HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred CCCEEeCcCcccCH-------------------------HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEE
Confidence 55555555555444 44444455555555555555 34431 33344455555555
Q ss_pred eccCc-ccCCC-CCccccCCC-CCCEEEcCCC--cCC-ccCCccccCcCCCCEEEecCcc-CCCCCCCcccCCccccEEE
Q 005278 164 YLHGN-KLQGS-IPYDLCHLE-GLSELNLNGN--KLC-GHVPPCLASLTSLRRLHLGSNK-LTSTMPSSFGSLEYVLYIN 236 (704)
Q Consensus 164 ~L~~n-~l~~~-~~~~l~~l~-~L~~L~L~~n--~l~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ 236 (704)
++++| .+++. ++..+..++ +|++|++++| .++ +.++..+..+++|+.|++++|. +++..+..+..+++|++|+
T Consensus 174 ~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~ 253 (336)
T 2ast_B 174 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLS 253 (336)
T ss_dssp ECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred cCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEee
Confidence 55555 44432 233344455 5555555555 233 2333444455555555555555 4444444555555555555
Q ss_pred ecCcc-cCCCCCcccccCcCCcEEEeecCccCCCCCCCcCCC-CCcceeeccCceeeccCCccccc
Q 005278 237 LSANS-LNGSLPSNIQNLKVLTNLDLSRNQLSGDIPTTIGGL-ENLETLSLADNQFQGPVPKSFGS 300 (704)
Q Consensus 237 l~~N~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~p~~~~~ 300 (704)
+++|. +.......+.++++|+.|++++| ++. ..+..+ .++..|++++|++++..|..++.
T Consensus 254 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 254 LSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred CCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCcccc
Confidence 55553 22111124555666666666666 321 122222 23555556666666666655543
No 339
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=3.1e-23 Score=204.47 Aligned_cols=187 Identities=17% Similarity=0.201 Sum_probs=115.4
Q ss_pred CcccCCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEeccccc-CCCcccchhhcccccCCCCCCCcEEEccC-C
Q 005278 18 LSGTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNY-LMTESSAAKWNFLSSLTNCRNLTVLGLAS-N 95 (704)
Q Consensus 18 i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~~~~~~~~l~~L~~L~L~~-n 95 (704)
++ .+|. +. ++|++|+|++|.++++.+..|.++++|++|++++|. ++.++..+ |.++++|++|+|++ |
T Consensus 23 l~-~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~-------f~~l~~L~~L~l~~~n 91 (239)
T 2xwt_C 23 IQ-RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHS-------FYNLSKVTHIEIRNTR 91 (239)
T ss_dssp CS-SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTT-------EESCTTCCEEEEEEET
T ss_pred cc-ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhH-------cCCCcCCcEEECCCCC
Confidence 55 5666 43 389999999999998888889999999999999997 87766544 88889999999998 8
Q ss_pred CCcccCChhhhhcccccceEEecCCcccccCChhhhcCCCCC---EEEccCC-cCccccChhhcCCCCcC-eeeccCccc
Q 005278 96 PLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGMI---VFDLNGC-DLNGTIPTAVGRLRRLQ-GLYLHGNKL 170 (704)
Q Consensus 96 ~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~~l~~L~-~L~L~~n~l 170 (704)
+++...+..|..+. +|++|++++|++++ +|. +..+++|+ +|++++| .++...+..|.++++|+ .|++++|++
T Consensus 92 ~l~~i~~~~f~~l~-~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l 168 (239)
T 2xwt_C 92 NLTYIDPDALKELP-LLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF 168 (239)
T ss_dssp TCCEECTTSEECCT-TCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC
T ss_pred CeeEcCHHHhCCCC-CCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC
Confidence 88865544444432 45555555555553 333 45555555 5555555 55544444455555555 555555555
Q ss_pred CCCCCccccCCCCCCEEEcCCCc-CCccCCccccCc-CCCCEEEecCccCC
Q 005278 171 QGSIPYDLCHLEGLSELNLNGNK-LCGHVPPCLASL-TSLRRLHLGSNKLT 219 (704)
Q Consensus 171 ~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l-~~L~~L~l~~n~l~ 219 (704)
+ .+|......++|++|+|++|+ +++..+..|..+ ++|+.|++++|+++
T Consensus 169 ~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 169 T-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp C-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred c-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 5 233222222455555555553 543334444454 55555555555554
No 340
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=1.3e-24 Score=226.23 Aligned_cols=234 Identities=17% Similarity=0.188 Sum_probs=181.9
Q ss_pred CCCcEEEccCCCCcccCChhhhhcccccceEEecCCccccc-CChhhhcCCCCCEEEccCCcCccccChhhcCCCCcCee
Q 005278 85 RNLTVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGN-IPQEIGNLSGMIVFDLNGCDLNGTIPTAVGRLRRLQGL 163 (704)
Q Consensus 85 ~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 163 (704)
++++.|++++|.+.+..+.. ..+ ++|++|++++|.+.+. ++..+..+++|++|+|++|.+++..+..++.+++|++|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~-~~~-~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEH-FSP-FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTCEECSCCCSC-CCC-BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred ccceEEEcCCccccccchhh-ccC-CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence 45555555555555444332 222 3566666666665544 66778899999999999999998888999999999999
Q ss_pred eccCc-ccCCC-CCccccCCCCCCEEEcCCC-cCCcc-CCccccCcC-CCCEEEecCc--cCC-CCCCCcccCCccccEE
Q 005278 164 YLHGN-KLQGS-IPYDLCHLEGLSELNLNGN-KLCGH-VPPCLASLT-SLRRLHLGSN--KLT-STMPSSFGSLEYVLYI 235 (704)
Q Consensus 164 ~L~~n-~l~~~-~~~~l~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~-~L~~L~l~~n--~l~-~~~~~~~~~l~~L~~L 235 (704)
+|++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|+.|++++| .++ +.++..+..+++|++|
T Consensus 148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L 227 (336)
T 2ast_B 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 227 (336)
T ss_dssp ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEE
T ss_pred ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEE
Confidence 99999 67752 5666888999999999999 99854 567788899 9999999999 455 3456677789999999
Q ss_pred EecCcc-cCCCCCcccccCcCCcEEEeecCc-cCCCCCCCcCCCCCcceeeccCceeeccCCcccccc-cccceEEeccc
Q 005278 236 NLSANS-LNGSLPSNIQNLKVLTNLDLSRNQ-LSGDIPTTIGGLENLETLSLADNQFQGPVPKSFGSL-ISLESLDLSRN 312 (704)
Q Consensus 236 ~l~~N~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~l~~N 312 (704)
++++|. +++..+..+..+++|+.|++++|. +.......++.+++|+.|++++| ++. ..+..+ .+++.|++++|
T Consensus 228 ~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n 303 (336)
T 2ast_B 228 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCS 303 (336)
T ss_dssp ECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCC
T ss_pred eCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecc
Confidence 999999 777788899999999999999996 33222236888999999999999 442 234444 34788889999
Q ss_pred CCCCCCCCCccc
Q 005278 313 NLSGEIPKNFSA 324 (704)
Q Consensus 313 ~l~~~~p~~~~~ 324 (704)
++++..|..+..
T Consensus 304 ~l~~~~~~~~~~ 315 (336)
T 2ast_B 304 HFTTIARPTIGN 315 (336)
T ss_dssp CSCCTTCSSCSS
T ss_pred cCccccCCcccc
Confidence 999999876553
No 341
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=7.8e-23 Score=209.47 Aligned_cols=193 Identities=24% Similarity=0.380 Sum_probs=146.5
Q ss_pred CCCCCCEEecCCCcCcccCCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccCCC
Q 005278 4 MLPNLKYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTN 83 (704)
Q Consensus 4 ~l~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~ 83 (704)
.|++|+.|++++|.++. ++ .+..+++|++|+|++|.++++.+ |.++++|++|+|++|.++..+ .+..
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~---------~~~~ 105 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS---------AIAG 105 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG---------GGTT
T ss_pred HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch---------hhcC
Confidence 36789999999999994 55 69999999999999999997755 999999999999999998753 2888
Q ss_pred CCCCcEEEccCCCCcccCChhhhhcccccceEEecCCcccccCChhhhcCCCCCEEEccCCcCccccChhhcCCCCcCee
Q 005278 84 CRNLTVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNGTIPTAVGRLRRLQGL 163 (704)
Q Consensus 84 l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 163 (704)
+++|++|+|++|++.+.. .+..+++|++|++++|.+++..+ +..+++|+.|
T Consensus 106 l~~L~~L~l~~n~l~~~~---------------------------~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L 156 (308)
T 1h6u_A 106 LQSIKTLDLTSTQITDVT---------------------------PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYL 156 (308)
T ss_dssp CTTCCEEECTTSCCCCCG---------------------------GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEE
T ss_pred CCCCCEEECCCCCCCCch---------------------------hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEE
Confidence 999999999999987431 14556667777777777664433 6667777777
Q ss_pred eccCcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCcccC
Q 005278 164 YLHGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLN 243 (704)
Q Consensus 164 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 243 (704)
+|++|++++. +. +..+++|++|++++|++++..+ +..+++|+.|++++|.+++.. .+..+++|+.|++++|.++
T Consensus 157 ~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 157 SIGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp ECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred EccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 7777777643 22 6677777777777777774332 667777777777777777543 3677777777777777776
Q ss_pred C
Q 005278 244 G 244 (704)
Q Consensus 244 ~ 244 (704)
+
T Consensus 231 ~ 231 (308)
T 1h6u_A 231 N 231 (308)
T ss_dssp C
T ss_pred c
Confidence 3
No 342
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.89 E-value=2.2e-25 Score=251.01 Aligned_cols=311 Identities=14% Similarity=0.061 Sum_probs=156.5
Q ss_pred CCCCCEEecCCCcCccc----CCccccCCCCCCEEeccCccccc----cCchhhcCCCCCCEEecccccCCCcccch---
Q 005278 5 LPNLKYLTLFDNKLSGT----IPNSITNASKLIMLDLSSNSFSG----LIPNTFGNLGSLQVLSLAYNYLMTESSAA--- 73 (704)
Q Consensus 5 l~~l~~L~l~~~~i~~~----~~~~~~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~--- 73 (704)
+++|++|+|++|.+++. ++..+.++++|++|+|++|.+++ ..+..+.++++|++|+|++|.+..++...
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~ 242 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAA 242 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHC
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhh
Confidence 45566666666655433 22233445556666665555542 22333445555666666555543321000
Q ss_pred ----------------hhcccccCCCCCCCcEEEccCCCCcccCChhhhhcccccceEEecCCcccccCC-hhhhcCCCC
Q 005278 74 ----------------KWNFLSSLTNCRNLTVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIP-QEIGNLSGM 136 (704)
Q Consensus 74 ----------------~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L 136 (704)
.......+..+++|+.|+++++... ..|..+..+ ++|++|++++|.+++... ..+..+++|
T Consensus 243 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~-~~L~~L~Ls~~~l~~~~~~~~~~~~~~L 320 (592)
T 3ogk_B 243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFA-AQIRKLDLLYALLETEDHCTLIQKCPNL 320 (592)
T ss_dssp TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGG-GGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred hHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhc-CCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence 0001112233333333333332211 222222222 356666666666543322 234556666
Q ss_pred CEEEccCCcCccccChhhcCCCCcCeeecc-----------CcccCCCCCcc-ccCCCCCCEEEcCCCcCCccCCccccC
Q 005278 137 IVFDLNGCDLNGTIPTAVGRLRRLQGLYLH-----------GNKLQGSIPYD-LCHLEGLSELNLNGNKLCGHVPPCLAS 204 (704)
Q Consensus 137 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-----------~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~ 204 (704)
++|+++++-....++..+..+++|++|+++ .|.+++..... ...+++|++|+++.|.+++..+..+..
T Consensus 321 ~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~ 400 (592)
T 3ogk_B 321 EVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT 400 (592)
T ss_dssp CEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH
T ss_pred CEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh
Confidence 666666222222233333455666666666 24444221111 233566666666666666554444443
Q ss_pred -cCCCCEEEec----CccCCCC-----CCCcccCCccccEEEecCcc--cCCCCCcccc-cCcCCcEEEeecCccCC-CC
Q 005278 205 -LTSLRRLHLG----SNKLTST-----MPSSFGSLEYVLYINLSANS--LNGSLPSNIQ-NLKVLTNLDLSRNQLSG-DI 270 (704)
Q Consensus 205 -l~~L~~L~l~----~n~l~~~-----~~~~~~~l~~L~~L~l~~N~--l~~~~~~~~~-~l~~L~~L~l~~n~l~~-~~ 270 (704)
+++|+.|+++ .|.+++. .+..+.++++|++|++++|. +++..+..+. .+++|+.|++++|++++ .+
T Consensus 401 ~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 480 (592)
T 3ogk_B 401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGL 480 (592)
T ss_dssp HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHH
T ss_pred hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHH
Confidence 6667777774 4555532 11224456677777776433 4433333333 36667777777777764 23
Q ss_pred CCCcCCCCCcceeeccCceeecc-CCcccccccccceEEecccCCCCC
Q 005278 271 PTTIGGLENLETLSLADNQFQGP-VPKSFGSLISLESLDLSRNNLSGE 317 (704)
Q Consensus 271 ~~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~ 317 (704)
+..+.++++|+.|+|++|.+++. ++.....+++|+.|++++|+++..
T Consensus 481 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 481 MEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 33445667777777777776643 233345667777777777776643
No 343
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=2.6e-22 Score=199.40 Aligned_cols=160 Identities=28% Similarity=0.299 Sum_probs=111.8
Q ss_pred CCCCEEEccCCcCccccChhhcCCCCcCeeeccCcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEe
Q 005278 134 SGMIVFDLNGCDLNGTIPTAVGRLRRLQGLYLHGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHL 213 (704)
Q Consensus 134 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 213 (704)
++|++|+|++|.+.+..+..|.++++|++|+|++|+|++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 35666666666666666666666666666666666666655556666667777777777776555556666777777777
Q ss_pred cCccCCCCCCCcccCCccccEEEecCcccCCCCCcccccCcCCcEEEeecCccCCCCCCCcCCCCCcceeeccCceeecc
Q 005278 214 GSNKLTSTMPSSFGSLEYVLYINLSANSLNGSLPSNIQNLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSLADNQFQGP 293 (704)
Q Consensus 214 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 293 (704)
++|.+++..+..|..+++|++|+|++|.+++..+..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|++.+.
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 77777766556667777777777777777766666677777777788888877766666777788888888888887754
No 344
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.88 E-value=2.3e-22 Score=210.08 Aligned_cols=240 Identities=16% Similarity=0.149 Sum_probs=135.2
Q ss_pred CEEecCCCcCcccCCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCC-cccchhhcccccCCCCCCC
Q 005278 9 KYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMT-ESSAAKWNFLSSLTNCRNL 87 (704)
Q Consensus 9 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~~~~~~~~l~~L 87 (704)
++++.++++++ .+|..+ .+++++|+|++|+|+.+.+++|.++++|++|+|++|++.. ++..+ |.++++|
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~-------f~~L~~l 81 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV-------FSNLPKL 81 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTS-------BCSCTTC
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhH-------hhcchhh
Confidence 45667777777 566655 2567777777777776666677777777777777777643 33222 5666665
Q ss_pred cE-EEccCCCCcccCChhhhhcccccceEEecCCcccccCChhhhcCCCCCEEEccCCcCccccChhhcCCCCcCeeecc
Q 005278 88 TV-LGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNGTIPTAVGRLRRLQGLYLH 166 (704)
Q Consensus 88 ~~-L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 166 (704)
.+ +.+++|++.. ..|..|.++++|++|++++|.+....+..+....++..|++.
T Consensus 82 ~~~l~~~~N~l~~-------------------------l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~ 136 (350)
T 4ay9_X 82 HEIRIEKANNLLY-------------------------INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQ 136 (350)
T ss_dssp CEEEEEEETTCCE-------------------------ECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEE
T ss_pred hhhhcccCCcccc-------------------------cCchhhhhccccccccccccccccCCchhhcccchhhhhhhc
Confidence 54 4444555554 444455555666666666666654444445555555555554
Q ss_pred C-cccCCCCCccccCCC-CCCEEEcCCCcCCccCCccccCcCCCCEEEecC-ccCCCCCCCcccCCccccEEEecCcccC
Q 005278 167 G-NKLQGSIPYDLCHLE-GLSELNLNGNKLCGHVPPCLASLTSLRRLHLGS-NKLTSTMPSSFGSLEYVLYINLSANSLN 243 (704)
Q Consensus 167 ~-n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 243 (704)
+ |+++...+..|..+. .++.|+|++|+|+. ++......++|+.|++.+ |.++.+.++.|..+++|++|++++|+|+
T Consensus 137 ~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 137 DNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp SCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred cccccccccccchhhcchhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence 3 445433334444443 45666666666663 333333445566666653 4555444445666666666666666666
Q ss_pred CCCCcccccCcCCcEEEeecCccCCCCCCCcCCCCCcceeeccCc
Q 005278 244 GSLPSNIQNLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSLADN 288 (704)
Q Consensus 244 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 288 (704)
...+.. +.+|+.|.+.++.--..+| .+..+++|+.+++.++
T Consensus 216 ~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 216 SLPSYG---LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp CCCSSS---CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred ccChhh---hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 333322 3334444444443323455 3566677777776654
No 345
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.87 E-value=7.4e-24 Score=238.57 Aligned_cols=308 Identities=11% Similarity=0.015 Sum_probs=227.0
Q ss_pred CCCCCCEEecCCCcCc----ccCCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCc--------c-
Q 005278 4 MLPNLKYLTLFDNKLS----GTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTE--------S- 70 (704)
Q Consensus 4 ~l~~l~~L~l~~~~i~----~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~--------~- 70 (704)
.+++|+.|+|++|.++ +.++..+.++++|++|+|++|.+.+ .+..+.++++|++|+++.+..... .
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 4789999999999987 3455566788999999999999886 567788888888888874322100 0
Q ss_pred ----------cchhhcccccCCCCCCCcEEEccCCCCcccCChhhhhcccccceEEecCCcccccCChhhhcCCCCCEEE
Q 005278 71 ----------SAAKWNFLSSLTNCRNLTVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGMIVFD 140 (704)
Q Consensus 71 ----------~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 140 (704)
......++..+..+++|++|+|++|.+++.....+....++|++|++.++.....++..+..+++|++|+
T Consensus 269 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~ 348 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLR 348 (592)
T ss_dssp CTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEE
T ss_pred cccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEE
Confidence 0001124555778999999999999987665544444456899999994444445555567899999999
Q ss_pred ccC-----------CcCcccc-ChhhcCCCCcCeeeccCcccCCCCCccccC-CCCCCEEEcC----CCcCCcc-----C
Q 005278 141 LNG-----------CDLNGTI-PTAVGRLRRLQGLYLHGNKLQGSIPYDLCH-LEGLSELNLN----GNKLCGH-----V 198 (704)
Q Consensus 141 L~~-----------n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~L~----~n~l~~~-----~ 198 (704)
+++ |.++... +..+..+++|++|+++.|.+++..+..+.. +++|++|+++ .|.+++. +
T Consensus 349 L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~ 428 (592)
T 3ogk_B 349 IERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGV 428 (592)
T ss_dssp EECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHH
T ss_pred eecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHH
Confidence 993 5666432 333556899999999999998776666665 8999999996 7788853 3
Q ss_pred CccccCcCCCCEEEecCcc--CCCCCCCccc-CCccccEEEecCcccCC-CCCcccccCcCCcEEEeecCccCCC-CCCC
Q 005278 199 PPCLASLTSLRRLHLGSNK--LTSTMPSSFG-SLEYVLYINLSANSLNG-SLPSNIQNLKVLTNLDLSRNQLSGD-IPTT 273 (704)
Q Consensus 199 ~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~-~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~ 273 (704)
+..+..+++|+.|++++|. +++.....+. .+++|++|++++|.+++ .++..+..+++|+.|++++|++++. ++..
T Consensus 429 ~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 508 (592)
T 3ogk_B 429 RSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAA 508 (592)
T ss_dssp HHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHH
T ss_pred HHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHH
Confidence 3446778999999998543 6544444443 48899999999999875 3344567889999999999998754 3344
Q ss_pred cCCCCCcceeeccCceeeccCCccc-ccccccceEEeccc
Q 005278 274 IGGLENLETLSLADNQFQGPVPKSF-GSLISLESLDLSRN 312 (704)
Q Consensus 274 ~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~l~~N 312 (704)
+..+++|+.|+|++|++++.....+ ..+|.+....+..+
T Consensus 509 ~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 509 VTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 4678999999999999987655444 36777777666655
No 346
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.87 E-value=3.1e-24 Score=241.81 Aligned_cols=186 Identities=15% Similarity=0.052 Sum_probs=111.1
Q ss_pred CCCCCCEEecCCCcCcccCCcccc-CCCCCCEEeccCc-ccccc-CchhhcCCCCCCEEecccccCCCcccchhhccccc
Q 005278 4 MLPNLKYLTLFDNKLSGTIPNSIT-NASKLIMLDLSSN-SFSGL-IPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSS 80 (704)
Q Consensus 4 ~l~~l~~L~l~~~~i~~~~~~~~~-~l~~L~~L~L~~n-~i~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~ 80 (704)
.+++|+.|+|++|.+++..+..+. .+++|++|+|++| .+++. .+..+.++++|++|+|++|.++...... +...
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~---l~~~ 179 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHW---LSHF 179 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGG---GGGS
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHH---HHHH
Confidence 467888888888888766666665 6788888888888 55543 3344457888888888888876655433 3333
Q ss_pred CCCCCCCcEEEccCCC--CcccCChhhhhcccccceEEecCCcccccCChhhhcCCCCCEEEccCCc-------------
Q 005278 81 LTNCRNLTVLGLASNP--LRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCD------------- 145 (704)
Q Consensus 81 ~~~l~~L~~L~L~~n~--i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~------------- 145 (704)
...+++|++|+|++|. +.......+..-.++|++|++.+|...+.++..+..+++|++|+++++.
T Consensus 180 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 259 (594)
T 2p1m_B 180 PDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV 259 (594)
T ss_dssp CTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH
T ss_pred hhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHH
Confidence 4577788888888886 3222222222224578888888873222255555555666666544331
Q ss_pred -------------Cc----cccChhhcCCCCcCeeeccCcccCCCCC-ccccCCCCCCEEEcCCC
Q 005278 146 -------------LN----GTIPTAVGRLRRLQGLYLHGNKLQGSIP-YDLCHLEGLSELNLNGN 192 (704)
Q Consensus 146 -------------l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n 192 (704)
+. ..++..+..+++|++|+|++|.+++... ..+..+++|++|++++|
T Consensus 260 ~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 260 ALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred HHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 11 1122223345667777777766553221 12345566666666665
No 347
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.87 E-value=1.7e-21 Score=203.57 Aligned_cols=242 Identities=16% Similarity=0.120 Sum_probs=180.0
Q ss_pred CEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccCCCCCCCcEEEccCCCCcccCChhhhhccccc
Q 005278 33 IMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTNCRNLTVLGLASNPLRGILPPLIGNFSASL 112 (704)
Q Consensus 33 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L 112 (704)
+.++.++++++. +|..+ .++|++|+|++|+|+.++..+ |.++++|++|+|++|++.+.+|
T Consensus 12 ~~v~C~~~~Lt~-iP~~l--~~~l~~L~Ls~N~i~~i~~~~-------f~~l~~L~~L~Ls~N~i~~~i~---------- 71 (350)
T 4ay9_X 12 RVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGA-------FSGFGDLEKIEISQNDVLEVIE---------- 71 (350)
T ss_dssp TEEEEESTTCCS-CCTTC--CTTCSEEEEESCCCSEECTTS-------STTCTTCCEEEEECCTTCCEEC----------
T ss_pred CEEEecCCCCCc-cCcCc--CCCCCEEEccCCcCCCcCHHH-------HcCCCCCCEEECcCCCCCCccC----------
Confidence 456777777774 34434 356777777777777766544 7777777777777777653322
Q ss_pred ceEEecCCcccccCChhhhcCCCCCE-EEccCCcCccccChhhcCCCCcCeeeccCcccCCCCCccccCCCCCCEEEcCC
Q 005278 113 QEFYAYGCKLRGNIPQEIGNLSGMIV-FDLNGCDLNGTIPTAVGRLRRLQGLYLHGNKLQGSIPYDLCHLEGLSELNLNG 191 (704)
Q Consensus 113 ~~L~l~~n~l~~~~~~~~~~l~~L~~-L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 191 (704)
+.+|.+++++++ +.+++|++..+.++.|..+++|++|++++|+|+...+..+....++..|++.+
T Consensus 72 --------------~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~ 137 (350)
T 4ay9_X 72 --------------ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD 137 (350)
T ss_dssp --------------TTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEES
T ss_pred --------------hhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcc
Confidence 345677878775 66778999988899999999999999999999977676777888899999966
Q ss_pred -CcCCccCCccccCcC-CCCEEEecCccCCCCCCCcccCCccccEEEecC-cccCCCCCcccccCcCCcEEEeecCccCC
Q 005278 192 -NKLCGHVPPCLASLT-SLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSA-NSLNGSLPSNIQNLKVLTNLDLSRNQLSG 268 (704)
Q Consensus 192 -n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 268 (704)
|++....+..|..+. .++.|++++|+|+.+.+. .....+|+.|++++ |.++...+..|..+++|+.|++++|+|+.
T Consensus 138 ~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~-~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~ 216 (350)
T 4ay9_X 138 NINIHTIERNSFVGLSFESVILWLNKNGIQEIHNS-AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 216 (350)
T ss_dssp CTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTT-SSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC
T ss_pred ccccccccccchhhcchhhhhhccccccccCCChh-hccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc
Confidence 677755566777764 689999999999954444 44567899999985 66775555678999999999999999995
Q ss_pred CCCCCcCCCCCcceeeccCceeeccCCcccccccccceEEecccC
Q 005278 269 DIPTTIGGLENLETLSLADNQFQGPVPKSFGSLISLESLDLSRNN 313 (704)
Q Consensus 269 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~ 313 (704)
..+..+.++++|+.++ +.-...+| .+.++++|+.++++++.
T Consensus 217 lp~~~~~~L~~L~~l~---~~~l~~lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 217 LPSYGLENLKKLRARS---TYNLKKLP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp CCSSSCTTCCEEECTT---CTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred cChhhhccchHhhhcc---CCCcCcCC-CchhCcChhhCcCCCCc
Confidence 4444555555554444 43233666 47899999999997653
No 348
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=2.8e-21 Score=186.06 Aligned_cols=157 Identities=27% Similarity=0.262 Sum_probs=68.8
Q ss_pred CcCeeeccCcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEec
Q 005278 159 RLQGLYLHGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLS 238 (704)
Q Consensus 159 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 238 (704)
+|++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|+.|++++|.+++..+..|..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 33444444444443323333344444444444444443323333444444444444444443333334444444444444
Q ss_pred CcccCCCCCcccccCcCCcEEEeecCccCCCCCCCcCCCCCcceeeccCceeeccCCcccccccccceEEecccCCCCCC
Q 005278 239 ANSLNGSLPSNIQNLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSLADNQFQGPVPKSFGSLISLESLDLSRNNLSGEI 318 (704)
Q Consensus 239 ~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 318 (704)
+|.+++..+..|..+++|+.|++++|++++..+..+..+++|+.|++++|.+.+ .+++|+.|+++.|.++|.+
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVV 181 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTB
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCcee
Confidence 444443333334444445555555555543333344445555555555554432 2334555555555555555
Q ss_pred CCCc
Q 005278 319 PKNF 322 (704)
Q Consensus 319 p~~~ 322 (704)
|..+
T Consensus 182 p~~~ 185 (208)
T 2o6s_A 182 RNSA 185 (208)
T ss_dssp BCTT
T ss_pred eccC
Confidence 5443
No 349
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=99.86 E-value=1.2e-22 Score=204.39 Aligned_cols=151 Identities=16% Similarity=0.098 Sum_probs=118.8
Q ss_pred HHHHHhCCCCccccccccCceEEEEEEECCCCEEEEEEeeccch------------------hhhHHHHHHHHHHHhcCC
Q 005278 409 DIQRATNGFNECNLLGTGSFGSVYKGTLFDGTNVAIKVFNLQLE------------------RASRSFDSECEILRSIRH 470 (704)
Q Consensus 409 ~~~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~------------------~~~~~~~~e~~~l~~l~h 470 (704)
.+......|...+.||+|+||.||+|+..+|+.||||+++.... .....+.+|++++++++|
T Consensus 84 ~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~~ 163 (282)
T 1zar_A 84 RLVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQG 163 (282)
T ss_dssp HHHHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhccC
Confidence 33444566777799999999999999987799999999864321 134568899999999994
Q ss_pred CCCceEEeeeeeCCeEEEEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCC
Q 005278 471 RNLIKIISNCCNIDFKALVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDE 550 (704)
Q Consensus 471 ~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~ 550 (704)
+++.+++.. +..++||||+++|+|.+ +.. .....++.|++.|++||| +.+|+||||||+||+++
T Consensus 164 ---~~v~~~~~~-~~~~lvmE~~~g~~L~~-l~~-------~~~~~i~~qi~~~l~~lH---~~giiHrDlkp~NILl~- 227 (282)
T 1zar_A 164 ---LAVPKVYAW-EGNAVLMELIDAKELYR-VRV-------ENPDEVLDMILEEVAKFY---HRGIVHGDLSQYNVLVS- 227 (282)
T ss_dssp ---SSSCCEEEE-ETTEEEEECCCCEEGGG-CCC-------SCHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEEE-
T ss_pred ---CCcCeEEec-cceEEEEEecCCCcHHH-cch-------hhHHHHHHHHHHHHHHHH---HCCCEeCCCCHHHEEEE-
Confidence 455554433 45699999999999988 432 123469999999999995 57899999999999999
Q ss_pred CCcEEEeeeccceecCCCCCcceeccccccccccCCcccC
Q 005278 551 NMTAHVSDFGISKLLGEGDDSVIQTMTIATIGYMAPEYGS 590 (704)
Q Consensus 551 ~~~~kl~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~ 590 (704)
++.+||+|||+|+. +..|+|||++.
T Consensus 228 ~~~vkl~DFG~a~~---------------~~~~~a~e~l~ 252 (282)
T 1zar_A 228 EEGIWIIDFPQSVE---------------VGEEGWREILE 252 (282)
T ss_dssp TTEEEECCCTTCEE---------------TTSTTHHHHHH
T ss_pred CCcEEEEECCCCeE---------------CCCCCHHHHHH
Confidence 99999999999974 33467888754
No 350
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=5.3e-21 Score=184.08 Aligned_cols=182 Identities=26% Similarity=0.247 Sum_probs=160.7
Q ss_pred cceEEecCCcccccCChhhhcCCCCCEEEccCCcCccccChhhcCCCCcCeeeccCcccCCCCCccccCCCCCCEEEcCC
Q 005278 112 LQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNGTIPTAVGRLRRLQGLYLHGNKLQGSIPYDLCHLEGLSELNLNG 191 (704)
Q Consensus 112 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 191 (704)
-+.+++.++.++.. |..+ .++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|+|++
T Consensus 9 ~~~v~c~~~~l~~~-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 9 GTTVECYSQGRTSV-PTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TTEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCccCC-CCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 46788888888743 4333 46899999999999987777899999999999999999976666789999999999999
Q ss_pred CcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCcccCCCCCcccccCcCCcEEEeecCccCCCCC
Q 005278 192 NKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLNGSLPSNIQNLKVLTNLDLSRNQLSGDIP 271 (704)
Q Consensus 192 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 271 (704)
|++++..+..+..+++|+.|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|++.+
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--- 162 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--- 162 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC---
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec---
Confidence 99997767778999999999999999998888889999999999999999998777779999999999999998874
Q ss_pred CCcCCCCCcceeeccCceeeccCCcccccccc
Q 005278 272 TTIGGLENLETLSLADNQFQGPVPKSFGSLIS 303 (704)
Q Consensus 272 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 303 (704)
.+++|+.|+++.|+++|.+|..++.++.
T Consensus 163 ----~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 163 ----TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ----CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ----CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 4568999999999999999999887765
No 351
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.86 E-value=1.8e-23 Score=235.56 Aligned_cols=327 Identities=17% Similarity=0.132 Sum_probs=198.1
Q ss_pred CCCCCCEEecCCC-cCccc-CCccccCCCCCCEEeccCccccccCchhhc----CCCCCCEEecccccCCCcccchhhcc
Q 005278 4 MLPNLKYLTLFDN-KLSGT-IPNSITNASKLIMLDLSSNSFSGLIPNTFG----NLGSLQVLSLAYNYLMTESSAAKWNF 77 (704)
Q Consensus 4 ~l~~l~~L~l~~~-~i~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~----~l~~L~~L~L~~n~i~~~~~~~~~~~ 77 (704)
.+++|++|+|++| .++.. ++..+.++++|++|+|++|.+++..+..+. .+++|++|++++|. ..+.... +
T Consensus 128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~---l 203 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSA---L 203 (594)
T ss_dssp HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHH---H
T ss_pred hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHH---H
Confidence 4789999999999 66643 444455899999999999998876655554 66789999999987 2222221 2
Q ss_pred cccCCCCCCCcEEEccCCCCcccCChhhhhcccccceEEecCCc--------------------------cc----ccCC
Q 005278 78 LSSLTNCRNLTVLGLASNPLRGILPPLIGNFSASLQEFYAYGCK--------------------------LR----GNIP 127 (704)
Q Consensus 78 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~--------------------------l~----~~~~ 127 (704)
...+.++++|++|+|++|.-....+..+..+ ++|++|.+..+. +. ..++
T Consensus 204 ~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~ 282 (594)
T 2p1m_B 204 ERLVTRCPNLKSLKLNRAVPLEKLATLLQRA-PQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLP 282 (594)
T ss_dssp HHHHHHCTTCCEEECCTTSCHHHHHHHHHHC-TTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGG
T ss_pred HHHHHhCCCCcEEecCCCCcHHHHHHHHhcC-CcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHH
Confidence 2224557899999999883222344444444 367777755442 11 1233
Q ss_pred hhhhcCCCCCEEEccCCcCccccC-hhhcCCCCcCeeeccCcccCCCCCcc-ccCCCCCCEEEcC---------CCcCCc
Q 005278 128 QEIGNLSGMIVFDLNGCDLNGTIP-TAVGRLRRLQGLYLHGNKLQGSIPYD-LCHLEGLSELNLN---------GNKLCG 196 (704)
Q Consensus 128 ~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~---------~n~l~~ 196 (704)
..+..+++|++|+|++|.++.... ..+..+++|++|++++| +++..... ...+++|++|+++ .+.+++
T Consensus 283 ~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~ 361 (594)
T 2p1m_B 283 AVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTE 361 (594)
T ss_dssp GGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCH
T ss_pred HHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCH
Confidence 344467888888888888664322 23567788888888877 44222122 2246778888773 344543
Q ss_pred cCCcccc-CcCCCCEEEecCccCCCCCCCccc-CCccccEEEec--C----cccCCCCC-----cccccCcCCcEEEeec
Q 005278 197 HVPPCLA-SLTSLRRLHLGSNKLTSTMPSSFG-SLEYVLYINLS--A----NSLNGSLP-----SNIQNLKVLTNLDLSR 263 (704)
Q Consensus 197 ~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~--~----N~l~~~~~-----~~~~~l~~L~~L~l~~ 263 (704)
.....+. .+++|+.|.+.+|.+++.....+. .+++|+.|+++ + |.+++... ..+..+++|+.|++++
T Consensus 362 ~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 441 (594)
T 2p1m_B 362 QGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG 441 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC
Confidence 3222222 367777777777777654444443 46777777777 3 34442111 1245567777777765
Q ss_pred CccCCCCCCCcCC-CCCcceeeccCceeeccCCccc-ccccccceEEecccCCCCCCCC-CcccccccCcccccCCC
Q 005278 264 NQLSGDIPTTIGG-LENLETLSLADNQFQGPVPKSF-GSLISLESLDLSRNNLSGEIPK-NFSAQSFLSNYALCGPA 337 (704)
Q Consensus 264 n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~l~~N~l~~~~p~-~~~~~~~l~~~~l~g~~ 337 (704)
.+++..+..++. +++|+.|+|++|.+++..+..+ ..+++|+.|++++|++++..+. .....+.+....+.+++
T Consensus 442 -~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 442 -LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCS 517 (594)
T ss_dssp -SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSC
T ss_pred -cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCC
Confidence 555444444443 6777777777777765544444 5567777777777777433222 22334455555555543
No 352
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=4.6e-21 Score=210.50 Aligned_cols=189 Identities=24% Similarity=0.302 Sum_probs=114.3
Q ss_pred CCcEEEccCCCCcccCChhhhhcccccceEEecCCcccccCChhhhcCCCCCEEEccCCcCccccChhhcCCCCcCeeec
Q 005278 86 NLTVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNGTIPTAVGRLRRLQGLYL 165 (704)
Q Consensus 86 ~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 165 (704)
+|+.|+|++|++++ +|..+. ++|++|+|++|+++ .+| ..+++|++|+|++|.|++ +|. +.. +|+.|+|
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~---~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP---PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC---TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhHc---CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 45555555555553 332221 24555555555554 333 335666667777666664 444 443 6777777
Q ss_pred cCcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCcccCCC
Q 005278 166 HGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLNGS 245 (704)
Q Consensus 166 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 245 (704)
++|+|++ +|. .+++|+.|+|++|+|++ +|. .+++|+.|+|++|.|++ +|. |. ++|+.|+|++|.|+ .
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S 194 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence 7777664 444 45667777777777764 443 45667777777777765 444 44 66777777777766 4
Q ss_pred CCcccccCcCC-------cEEEeecCccCCCCCCCcCCCCCcceeeccCceeeccCCcccccccc
Q 005278 246 LPSNIQNLKVL-------TNLDLSRNQLSGDIPTTIGGLENLETLSLADNQFQGPVPKSFGSLIS 303 (704)
Q Consensus 246 ~~~~~~~l~~L-------~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 303 (704)
+|. +.. +| +.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|..+..+..
T Consensus 195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 195 LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 444 443 45 77777777777 56766667777777777777777777777665544
No 353
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=5.7e-21 Score=209.74 Aligned_cols=188 Identities=23% Similarity=0.333 Sum_probs=161.7
Q ss_pred ccceEEecCCcccccCChhhhcCCCCCEEEccCCcCccccChhhcCCCCcCeeeccCcccCCCCCccccCCCCCCEEEcC
Q 005278 111 SLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNGTIPTAVGRLRRLQGLYLHGNKLQGSIPYDLCHLEGLSELNLN 190 (704)
Q Consensus 111 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 190 (704)
+|+.|++++|++++ +|..+ +++|++|+|++|.|+ .+| ..+++|+.|+|++|+|++ +|. +.. +|++|+|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 79999999999997 66655 388999999999999 566 567999999999999996 776 665 99999999
Q ss_pred CCcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCcccCCCCCcccccCcCCcEEEeecCccCCCC
Q 005278 191 GNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLNGSLPSNIQNLKVLTNLDLSRNQLSGDI 270 (704)
Q Consensus 191 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 270 (704)
+|+|++ +|. .+++|+.|++++|.|++ +|. .+++|+.|+|++|.+++ +|. |. ++|+.|+|++|+|+ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 999996 665 68999999999999996 554 57899999999999996 666 66 89999999999999 77
Q ss_pred CCCcCCCCCc-------ceeeccCceeeccCCcccccccccceEEecccCCCCCCCCCccccc
Q 005278 271 PTTIGGLENL-------ETLSLADNQFQGPVPKSFGSLISLESLDLSRNNLSGEIPKNFSAQS 326 (704)
Q Consensus 271 ~~~~~~l~~L-------~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~ 326 (704)
|. +.. +| +.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|..+..+.
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 77 665 77 99999999999 6898888999999999999999998887665543
No 354
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.83 E-value=6e-21 Score=212.07 Aligned_cols=189 Identities=23% Similarity=0.313 Sum_probs=91.0
Q ss_pred CCEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccCCCCCCCcEEEccCCCCcccCChhhhhcccc
Q 005278 32 LIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTNCRNLTVLGLASNPLRGILPPLIGNFSAS 111 (704)
Q Consensus 32 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~ 111 (704)
+..+.+..+.+.++.+ +..|++|+.|++++|.+..++ .+..+++|++|+|++|++.+..+ +..+ ++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l~---------~l~~l~~L~~L~Ls~N~l~~~~~--l~~l-~~ 88 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ---------GIQYLPNVTKLFLNGNKLTDIKP--LTNL-KN 88 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCCT---------TGGGCTTCCEEECTTSCCCCCGG--GGGC-TT
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCCh---------HHccCCCCCEEEeeCCCCCCChh--hccC-CC
Confidence 3334444444443322 334444444455444444332 13444444444444444443222 2222 13
Q ss_pred cceEEecCCcccccCChhhhcCCCCCEEEccCCcCccccChhhcCCCCcCeeeccCcccCCCCCccccCCCCCCEEEcCC
Q 005278 112 LQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNGTIPTAVGRLRRLQGLYLHGNKLQGSIPYDLCHLEGLSELNLNG 191 (704)
Q Consensus 112 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 191 (704)
|+.|+|++|.+.+. ..+..+++|++|+|++|.+.+. ..+..+++|+.|+|++|+|++. ..+..+++|+.|+|++
T Consensus 89 L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~ 162 (605)
T 1m9s_A 89 LGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLED 162 (605)
T ss_dssp CCEEECCSSCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCS
T ss_pred CCEEECcCCCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcC
Confidence 33333333333321 1355555566666666655532 2355555666666666655532 3455555566666666
Q ss_pred CcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCcccCC
Q 005278 192 NKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLNG 244 (704)
Q Consensus 192 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 244 (704)
|+|++..| +..+++|+.|+|++|.|++. ..+..+++|+.|+|++|.+..
T Consensus 163 N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 163 NQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp SCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred CcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 65554333 55555566666665555532 235555555555555555543
No 355
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.83 E-value=4e-20 Score=205.41 Aligned_cols=198 Identities=20% Similarity=0.218 Sum_probs=155.0
Q ss_pred CCEEecCCCcCcccCCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccCCCCCCC
Q 005278 8 LKYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTNCRNL 87 (704)
Q Consensus 8 l~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~l~~L 87 (704)
+..+.+..+.+++..+ +..+++|+.|+|++|.+..+. .|..+++|+.|+|++|.++.++. +..+++|
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~---------l~~l~~L 89 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP---------LTNLKNL 89 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG---------GGGCTTC
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh---------hccCCCC
Confidence 3445667777775544 577888888888888888652 57888888888888888876542 6778888
Q ss_pred cEEEccCCCCcccCChhhhhcccccceEEecCCcccccCChhhhcCCCCCEEEccCCcCccccChhhcCCCCcCeeeccC
Q 005278 88 TVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNGTIPTAVGRLRRLQGLYLHG 167 (704)
Q Consensus 88 ~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 167 (704)
++|+|++|++.+. + .+..+ ++|++|+|++|.+.+. ..+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++
T Consensus 90 ~~L~Ls~N~l~~l-~-~l~~l-~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~ 162 (605)
T 1m9s_A 90 GWLFLDENKIKDL-S-SLKDL-KKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLED 162 (605)
T ss_dssp CEEECCSSCCCCC-T-TSTTC-TTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCS
T ss_pred CEEECcCCCCCCC-h-hhccC-CCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcC
Confidence 8888888888753 2 45555 4688888888888753 4688999999999999999865 6789999999999999
Q ss_pred cccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCC
Q 005278 168 NKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSL 229 (704)
Q Consensus 168 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 229 (704)
|+|++..| +..+++|+.|+|++|.|++. ..+..+++|+.|+|++|.+.+.....+..+
T Consensus 163 N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~~~~~l 220 (605)
T 1m9s_A 163 NQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNL 220 (605)
T ss_dssp SCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCCCCCSSC
T ss_pred CcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcccccccE
Confidence 99996655 88999999999999999854 468899999999999999986544444433
No 356
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.83 E-value=3.6e-20 Score=187.83 Aligned_cols=172 Identities=26% Similarity=0.405 Sum_probs=100.9
Q ss_pred hcCCCCCEEEccCCcCccccChhhcCCCCcCeeeccCcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCE
Q 005278 131 GNLSGMIVFDLNGCDLNGTIPTAVGRLRRLQGLYLHGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRR 210 (704)
Q Consensus 131 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 210 (704)
..+++|++|++++|.+... + .+..+++|++|+|++|++++..+ +..+++|++|+|++|++++ ++ .+..+++|+.
T Consensus 43 ~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCE
T ss_pred hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCE
Confidence 3455566666666655532 2 35555666666666666653322 5556666666666666653 22 2556666666
Q ss_pred EEecCccCCCCCCCcccCCccccEEEecCcccCCCCCcccccCcCCcEEEeecCccCCCCCCCcCCCCCcceeeccCcee
Q 005278 211 LHLGSNKLTSTMPSSFGSLEYVLYINLSANSLNGSLPSNIQNLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSLADNQF 290 (704)
Q Consensus 211 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 290 (704)
|++++|.+++. ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|++++..+ +..+++|+.|++++|.+
T Consensus 117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence 66666666542 3455566666666666666543 456666666666666666664333 66666666666666666
Q ss_pred eccCCcccccccccceEEecccCCCC
Q 005278 291 QGPVPKSFGSLISLESLDLSRNNLSG 316 (704)
Q Consensus 291 ~~~~p~~~~~l~~L~~L~l~~N~l~~ 316 (704)
++ +| .+..+++|+.|++++|+++.
T Consensus 191 ~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 191 SD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred CC-Ch-hhccCCCCCEEECcCCcccC
Confidence 63 33 36666667777777766654
No 357
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=1e-19 Score=184.47 Aligned_cols=168 Identities=29% Similarity=0.442 Sum_probs=129.0
Q ss_pred ccceEEecCCcccccCChhhhcCCCCCEEEccCCcCccccChhhcCCCCcCeeeccCcccCCCCCccccCCCCCCEEEcC
Q 005278 111 SLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNGTIPTAVGRLRRLQGLYLHGNKLQGSIPYDLCHLEGLSELNLN 190 (704)
Q Consensus 111 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 190 (704)
+|++|++++|.+... + .+..+++|++|+|++|.+++..+ +..+++|+.|+|++|++++ ++ .+..+++|++|+|+
T Consensus 47 ~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 47 SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE 120 (291)
T ss_dssp TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred cccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECC
Confidence 344555555544433 2 36777888888888888885544 7888888888888888874 33 47888888888888
Q ss_pred CCcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCcccCCCCCcccccCcCCcEEEeecCccCCCC
Q 005278 191 GNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLNGSLPSNIQNLKVLTNLDLSRNQLSGDI 270 (704)
Q Consensus 191 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 270 (704)
+|++++. ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++..+ +..+++|+.|++++|++++ +
T Consensus 121 ~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l 193 (291)
T 1h6t_A 121 HNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-L 193 (291)
T ss_dssp TSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-C
T ss_pred CCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-C
Confidence 8888853 4577888888888888888854 578888888999999888886544 8888899999999999984 4
Q ss_pred CCCcCCCCCcceeeccCceeec
Q 005278 271 PTTIGGLENLETLSLADNQFQG 292 (704)
Q Consensus 271 ~~~~~~l~~L~~L~L~~n~l~~ 292 (704)
+ .+..+++|+.|++++|+++.
T Consensus 194 ~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 194 R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp G-GGTTCTTCSEEEEEEEEEEC
T ss_pred h-hhccCCCCCEEECcCCcccC
Confidence 4 48889999999999999885
No 358
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.82 E-value=8.2e-20 Score=177.04 Aligned_cols=152 Identities=28% Similarity=0.337 Sum_probs=96.2
Q ss_pred CEEEccCCcCccccChhhcCCCCcCeeeccCcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCc
Q 005278 137 IVFDLNGCDLNGTIPTAVGRLRRLQGLYLHGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSN 216 (704)
Q Consensus 137 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 216 (704)
+.+++++++++ .+|..+. ++|+.|+|++|+|++..+..|..+++|++|+|++|++++..|..|..+++|+.|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 46677777776 4444333 56677777777776555556666677777777777776665666666666777777666
Q ss_pred cCCCCCCCcccCCccccEEEecCcccCCCCCcccccCcCCcEEEeecCccCCCCCCCcCCCCCcceeeccCceee
Q 005278 217 KLTSTMPSSFGSLEYVLYINLSANSLNGSLPSNIQNLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSLADNQFQ 291 (704)
Q Consensus 217 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 291 (704)
.|+...+..|..+++|++|+|++|.+++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 666555555666666666666666666555566666666666666666666555555555666666666666555
No 359
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=6.8e-20 Score=177.60 Aligned_cols=134 Identities=28% Similarity=0.351 Sum_probs=68.4
Q ss_pred CCEEEcCCCcCCccCC-ccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCcccCCCCCcccccCcCCcEEEee
Q 005278 184 LSELNLNGNKLCGHVP-PCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLNGSLPSNIQNLKVLTNLDLS 262 (704)
Q Consensus 184 L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 262 (704)
+++|+|++|+|++..+ ..|..+++|+.|+|++|.|++..+..|..+++|++|+|++|.+++..+..|..+++|+.|+|+
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence 3444444444443322 234444444444444444444444444445555555555555544444445555555555555
Q ss_pred cCccCCCCCCCcCCCCCcceeeccCceeeccCCcccccccccceEEecccCCCCC
Q 005278 263 RNQLSGDIPTTIGGLENLETLSLADNQFQGPVPKSFGSLISLESLDLSRNNLSGE 317 (704)
Q Consensus 263 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 317 (704)
+|++++..|..|..+++|+.|+|++|++++..|..|..+++|+.|++++|++.+.
T Consensus 114 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp TSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 5555555555555555555555555555555555555555555555555555543
No 360
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.82 E-value=3e-20 Score=194.80 Aligned_cols=157 Identities=25% Similarity=0.180 Sum_probs=73.2
Q ss_pred cCeeeccCcccCCCCCcccc-CCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEec
Q 005278 160 LQGLYLHGNKLQGSIPYDLC-HLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLS 238 (704)
Q Consensus 160 L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 238 (704)
++.|+|++|+|++..+..+. .+++|++|+|++|+|++..+..|..+++|+.|+|++|+|+...+..|..+++|++|+|+
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence 44444444444433333333 44444444444444443333444444444444444444444444444444444445555
Q ss_pred CcccCCCCCcccccCcCCcEEEeecCccCCCCCCCc---CCCCCcceeeccCceeeccCCcccccccc--cceEEecccC
Q 005278 239 ANSLNGSLPSNIQNLKVLTNLDLSRNQLSGDIPTTI---GGLENLETLSLADNQFQGPVPKSFGSLIS--LESLDLSRNN 313 (704)
Q Consensus 239 ~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~p~~~~~l~~--L~~L~l~~N~ 313 (704)
+|.+....+..|..+++|+.|+|++|+|++..+..| ..+++|+.|+|++|+|++..+..+..++. |+.|+|++|+
T Consensus 121 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 444444444444555555555555555543222222 34555555555555555433344444444 2555555555
Q ss_pred CCC
Q 005278 314 LSG 316 (704)
Q Consensus 314 l~~ 316 (704)
+.+
T Consensus 201 ~~C 203 (361)
T 2xot_A 201 LEC 203 (361)
T ss_dssp EEC
T ss_pred ccC
Confidence 543
No 361
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=2e-19 Score=174.23 Aligned_cols=154 Identities=25% Similarity=0.345 Sum_probs=115.0
Q ss_pred CeeeccCcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCc
Q 005278 161 QGLYLHGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSAN 240 (704)
Q Consensus 161 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 240 (704)
+.+++++|.++ .+|..+. ++|++|+|++|+|++..+..|..+++|+.|+|++|.+++..+..|..+++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 46777777777 5565554 57777888888777666667777777888888888777777777777777888888888
Q ss_pred ccCCCCCcccccCcCCcEEEeecCccCCCCCCCcCCCCCcceeeccCceeeccCCcccccccccceEEecccCCCCC
Q 005278 241 SLNGSLPSNIQNLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSLADNQFQGPVPKSFGSLISLESLDLSRNNLSGE 317 (704)
Q Consensus 241 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 317 (704)
.++...+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 77765556667777788888888887777777777777788888888877766666677777777888888777653
No 362
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=2.4e-19 Score=174.95 Aligned_cols=151 Identities=30% Similarity=0.352 Sum_probs=71.7
Q ss_pred CEEEccCCcCccccChhhcCCCCcCeeeccCcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCc
Q 005278 137 IVFDLNGCDLNGTIPTAVGRLRRLQGLYLHGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSN 216 (704)
Q Consensus 137 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 216 (704)
+.++.+++.++ .+|..+. ++|+.|+|++|+|++..|..|..+++|++|+|++|+|+...+..|..+++|+.|+|++|
T Consensus 22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 44555555555 3333222 45555555555555444555555555555555555554333344455555555555555
Q ss_pred cCCCCCCCcccCCccccEEEecCcccCCCCCcccccCcCCcEEEeecCccCCCCCCCcCCCCCcceeeccCceee
Q 005278 217 KLTSTMPSSFGSLEYVLYINLSANSLNGSLPSNIQNLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSLADNQFQ 291 (704)
Q Consensus 217 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 291 (704)
.|++..+..|..+++|++|+|++|.++ .+|..+..+++|+.|+|++|++++..+..|..+++|+.|+|++|.+.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 555444444444444444444444444 33444444444444444444444333333444444444444444443
No 363
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=3.1e-19 Score=172.94 Aligned_cols=155 Identities=23% Similarity=0.266 Sum_probs=115.7
Q ss_pred CEEEccCCcCccccChhhcCCCCcCeeeccCcccCCCCC-ccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecC
Q 005278 137 IVFDLNGCDLNGTIPTAVGRLRRLQGLYLHGNKLQGSIP-YDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGS 215 (704)
Q Consensus 137 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 215 (704)
+++++++|.++ .+|..+. +.++.|+|++|+|++..+ ..|..+++|++|+|++|+|++..+..|..+++|+.|+|++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 46777777776 3454432 345677777777775533 3467777777777777777766666777777888888888
Q ss_pred ccCCCCCCCcccCCccccEEEecCcccCCCCCcccccCcCCcEEEeecCccCCCCCCCcCCCCCcceeeccCceeeccC
Q 005278 216 NKLTSTMPSSFGSLEYVLYINLSANSLNGSLPSNIQNLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSLADNQFQGPV 294 (704)
Q Consensus 216 n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 294 (704)
|.+++..+..|..+++|++|+|++|.+++..|..|..+++|+.|+|++|++++..|..|..+++|+.|+|++|.+.+..
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 8887776677777888888888888888777778888888888888888888777888888888888888888887543
No 364
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=1.3e-19 Score=190.02 Aligned_cols=152 Identities=18% Similarity=0.178 Sum_probs=75.8
Q ss_pred cEEEccCCCCcccCChhhhhcccccceEEecCCcccccCChhhh-cCCCCCEEEccCCcCccccChhhcCCCCcCeeecc
Q 005278 88 TVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIG-NLSGMIVFDLNGCDLNGTIPTAVGRLRRLQGLYLH 166 (704)
Q Consensus 88 ~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 166 (704)
+.+++++|+++. +|..+. ..++.|+|++|++++..+..+. ++++|++|+|++|.|+...+..|.++++|++|+|+
T Consensus 21 ~~l~c~~~~l~~-iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCc-cCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 455555555552 232221 2344444444444444444444 55555555555555555444555555555555555
Q ss_pred CcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCCcc---cCCccccEEEecCcccC
Q 005278 167 GNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSF---GSLEYVLYINLSANSLN 243 (704)
Q Consensus 167 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~~N~l~ 243 (704)
+|+|+...+..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|.|++..+..| ..+++|+.|+|++|.|+
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 555554444445555555555555555554445555555555555555555553332223 23444444444444444
No 365
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=1.2e-18 Score=170.13 Aligned_cols=156 Identities=26% Similarity=0.304 Sum_probs=132.3
Q ss_pred cCeeeccCcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecC
Q 005278 160 LQGLYLHGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSA 239 (704)
Q Consensus 160 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 239 (704)
-+.+++++++++ .+|..+. ++|++|+|++|.+++..|..|..+++|+.|+|++|.|+...+..|..+++|++|+|++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 567888888888 6676554 7899999999999887788888889999999999999877777788899999999999
Q ss_pred cccCCCCCcccccCcCCcEEEeecCccCCCCCCCcCCCCCcceeeccCceeeccCCcccccccccceEEecccCCCCCCC
Q 005278 240 NSLNGSLPSNIQNLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSLADNQFQGPVPKSFGSLISLESLDLSRNNLSGEIP 319 (704)
Q Consensus 240 N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 319 (704)
|.+++..+..|..+++|+.|+|++|+++ .+|..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++.+..+
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 9998777777888899999999999998 788888889999999999999987666778888999999999999887655
No 366
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.78 E-value=5.7e-22 Score=218.99 Aligned_cols=204 Identities=20% Similarity=0.210 Sum_probs=147.7
Q ss_pred cCCCCCCEEeccCccccccCchhhcCCCCCCEEeccccc-------------CCCcccchhhcccccCCCCCCCcEEE-c
Q 005278 27 TNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNY-------------LMTESSAAKWNFLSSLTNCRNLTVLG-L 92 (704)
Q Consensus 27 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-------------i~~~~~~~~~~~~~~~~~l~~L~~L~-L 92 (704)
..+++|+.|+|++|.++ .+|..++++++|+.|++++|. +... .+..+.++++|+.|+ +
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~-------~~~~l~~l~~L~~L~~l 417 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY-------EKETLQYFSTLKAVDPM 417 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGG-------HHHHHHHHHHHHHHCGG
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccC-------CHHHHHHHHhcccCcch
Confidence 45677777777777776 457777777777777776553 1111 233356666666666 5
Q ss_pred cCCCCcccCChhhhhcccccceEEecCCcccccCChhhhcCCCCCEEEccCCcCccccChhhcCCCCcCeeeccCcccCC
Q 005278 93 ASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNGTIPTAVGRLRRLQGLYLHGNKLQG 172 (704)
Q Consensus 93 ~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 172 (704)
+.|.+. +|+.+.+.+|.++...+ ..|+.|+|++|.|++ +|. |+.+++|+.|+|++|+|+
T Consensus 418 ~~n~~~------------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~- 476 (567)
T 1dce_A 418 RAAYLD------------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR- 476 (567)
T ss_dssp GHHHHH------------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-
T ss_pred hhcccc------------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-
Confidence 555432 35555555666553322 248889999998885 565 888889999999999988
Q ss_pred CCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCC-CCcccCCccccEEEecCcccCCCCCcc--
Q 005278 173 SIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTM-PSSFGSLEYVLYINLSANSLNGSLPSN-- 249 (704)
Q Consensus 173 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~-- 249 (704)
.+|..++.+++|+.|+|++|+|++ +| .+..+++|+.|+|++|.|++.. |..++.+++|+.|+|++|.+++..+..
T Consensus 477 ~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 554 (567)
T 1dce_A 477 ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQER 554 (567)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTH
T ss_pred ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHH
Confidence 778888888999999999999885 56 7888899999999999998776 888888999999999999988654432
Q ss_pred -cccCcCCcEEEe
Q 005278 250 -IQNLKVLTNLDL 261 (704)
Q Consensus 250 -~~~l~~L~~L~l 261 (704)
+..+++|+.|++
T Consensus 555 l~~~lp~L~~L~l 567 (567)
T 1dce_A 555 LAEMLPSVSSILT 567 (567)
T ss_dssp HHHHCTTCSEEEC
T ss_pred HHHHCcccCccCC
Confidence 334788888864
No 367
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=5.9e-19 Score=168.04 Aligned_cols=107 Identities=18% Similarity=0.275 Sum_probs=50.2
Q ss_pred hcCCCCCEEEccCCcCccccChhhcCCCCcCeeeccCcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCE
Q 005278 131 GNLSGMIVFDLNGCDLNGTIPTAVGRLRRLQGLYLHGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRR 210 (704)
Q Consensus 131 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 210 (704)
+.+++|++|++++|.+. .++ .+..+++|++|++++|.++ .+..+..+++|++|++++|++++..+..+..+++|+.
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 44455555555555555 233 3455555555555555443 1224444455555555555554434444444444444
Q ss_pred EEecCccCCCCCCCcccCCccccEEEecCcc
Q 005278 211 LHLGSNKLTSTMPSSFGSLEYVLYINLSANS 241 (704)
Q Consensus 211 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 241 (704)
|++++|.+++..+..+..+++|++|++++|.
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 147 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNG 147 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence 4444444443333344444444444444443
No 368
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.78 E-value=1.9e-21 Score=214.82 Aligned_cols=204 Identities=19% Similarity=0.148 Sum_probs=157.2
Q ss_pred cCCCCCCEEecccccCCCcccchhhcccccCCCCCCCcEEEccCCCCcccCChhhhhcccccceEEecCCcccccCChhh
Q 005278 51 GNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTNCRNLTVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEI 130 (704)
Q Consensus 51 ~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 130 (704)
...++|+.|+|++|+++.+ |+.+.++++|+.|++++|......|.. + ..+...+..|..+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~L--------p~~i~~l~~L~~L~l~~n~~l~~l~~l-------l-----~~~~~~~~~~~~l 405 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVL--------QSELESCKELQELEPENKWCLLTIILL-------M-----RALDPLLYEKETL 405 (567)
T ss_dssp STTTTSSSCCCCHHHHHHH--------HHHHHHHHHHHHHCTTCHHHHHHHHHH-------H-----HHHCTGGGHHHHH
T ss_pred ccCccceeccCChhhHHhh--------HHHHHHHHHHHHhccccchhhhhHHHH-------H-----HhcccccCCHHHH
Confidence 6788999999999999764 445889999999999776521111100 0 1122334455555
Q ss_pred hcCCCCCEEE-ccC-------------CcCccccChhhcCCCCcCeeeccCcccCCCCCccccCCCCCCEEEcCCCcCCc
Q 005278 131 GNLSGMIVFD-LNG-------------CDLNGTIPTAVGRLRRLQGLYLHGNKLQGSIPYDLCHLEGLSELNLNGNKLCG 196 (704)
Q Consensus 131 ~~l~~L~~L~-L~~-------------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 196 (704)
+++++|+.|+ ++. |.+....+ ..|+.|+|++|+|++ +|. +..+++|+.|+|++|+|+
T Consensus 406 ~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~- 476 (567)
T 1dce_A 406 QYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR- 476 (567)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-
T ss_pred HHHHhcccCcchhhcccchhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-
Confidence 5555555555 343 44442211 358999999999995 676 999999999999999999
Q ss_pred cCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCcccCCCC-CcccccCcCCcEEEeecCccCCCCCCC--
Q 005278 197 HVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLNGSL-PSNIQNLKVLTNLDLSRNQLSGDIPTT-- 273 (704)
Q Consensus 197 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~-- 273 (704)
.+|..++.+++|+.|+|++|.|++ +| .++.+++|+.|+|++|.+++.. |..++.+++|+.|+|++|++++..|..
T Consensus 477 ~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 554 (567)
T 1dce_A 477 ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQER 554 (567)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTH
T ss_pred ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHH
Confidence 789999999999999999999996 56 8999999999999999999776 999999999999999999999655532
Q ss_pred -cCCCCCcceeec
Q 005278 274 -IGGLENLETLSL 285 (704)
Q Consensus 274 -~~~l~~L~~L~L 285 (704)
+..+++|+.|++
T Consensus 555 l~~~lp~L~~L~l 567 (567)
T 1dce_A 555 LAEMLPSVSSILT 567 (567)
T ss_dssp HHHHCTTCSEEEC
T ss_pred HHHHCcccCccCC
Confidence 234889999875
No 369
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.77 E-value=4.2e-19 Score=169.07 Aligned_cols=155 Identities=17% Similarity=0.283 Sum_probs=136.8
Q ss_pred hcCCCCcCeeeccCcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCcccc
Q 005278 154 VGRLRRLQGLYLHGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVL 233 (704)
Q Consensus 154 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 233 (704)
...+++|+.|++++|.++ .+| .+..+++|++|++++|.++ . +..+..+++|+.|++++|.+++..+..++.+++|+
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-N-YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-C-CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-c-chhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 366789999999999999 556 7999999999999999876 3 34789999999999999999987889999999999
Q ss_pred EEEecCcccCCCCCcccccCcCCcEEEeecCc-cCCCCCCCcCCCCCcceeeccCceeeccCCcccccccccceEEeccc
Q 005278 234 YINLSANSLNGSLPSNIQNLKVLTNLDLSRNQ-LSGDIPTTIGGLENLETLSLADNQFQGPVPKSFGSLISLESLDLSRN 312 (704)
Q Consensus 234 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N 312 (704)
+|++++|.+++..+..+..+++|+.|++++|+ ++ .++ .+..+++|+.|++++|++++ ++ .+..+++|+.|++++|
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCc
Confidence 99999999998888999999999999999998 65 666 68999999999999999995 44 7889999999999999
Q ss_pred CCCC
Q 005278 313 NLSG 316 (704)
Q Consensus 313 ~l~~ 316 (704)
++.+
T Consensus 192 ~i~~ 195 (197)
T 4ezg_A 192 TIGG 195 (197)
T ss_dssp ----
T ss_pred ccCC
Confidence 9864
No 370
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.77 E-value=1.8e-19 Score=179.80 Aligned_cols=167 Identities=22% Similarity=0.295 Sum_probs=110.6
Q ss_pred ccceEEecCCcccccCChhhhcCCCCCEEEccCCcCccccChhhcCCCCcCeeeccCcccCCCCCccccCCCCCCEEEcC
Q 005278 111 SLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNGTIPTAVGRLRRLQGLYLHGNKLQGSIPYDLCHLEGLSELNLN 190 (704)
Q Consensus 111 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 190 (704)
.+..+++.+|.+++.. .+..+++|++|++++|.++. ++ .+..+++|++|+|++|+|++..+ +..+++|++|+|+
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 4666777777776443 56777777888888777773 34 57777777777777777774433 7777777777777
Q ss_pred CCcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCcccCCCCCcccccCcCCcEEEeecCccCCCC
Q 005278 191 GNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLNGSLPSNIQNLKVLTNLDLSRNQLSGDI 270 (704)
Q Consensus 191 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 270 (704)
+|++++ ++. +.. ++|+.|++++|.+++. ..+..+++|+.|++++|.+++. + .+..+++|+.|++++|++++.
T Consensus 94 ~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 94 RNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp SSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-
T ss_pred CCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-
Confidence 777774 333 222 6777777777777643 3466667777777777776643 2 566666666666666666643
Q ss_pred CCCcCCCCCcceeeccCceeec
Q 005278 271 PTTIGGLENLETLSLADNQFQG 292 (704)
Q Consensus 271 ~~~~~~l~~L~~L~L~~n~l~~ 292 (704)
..+..+++|+.|++++|++++
T Consensus 166 -~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 166 -GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp -TTSTTCCCCCEEEEEEEEEEC
T ss_pred -HHhccCCCCCEEeCCCCcccC
Confidence 456666666666666666664
No 371
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.77 E-value=7.3e-19 Score=175.31 Aligned_cols=170 Identities=24% Similarity=0.354 Sum_probs=89.1
Q ss_pred CCCCCEEEccCCcCccccChhhcCCCCcCeeeccCcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEE
Q 005278 133 LSGMIVFDLNGCDLNGTIPTAVGRLRRLQGLYLHGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLH 212 (704)
Q Consensus 133 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 212 (704)
+.++..+++++|.++... .+..+++|+.|++++|+++ .++ .+..+++|++|+|++|++++..+ +..+++|+.|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 334445555555555322 3455555555555555555 233 45555555555555555553322 55555555555
Q ss_pred ecCccCCCCCCCcccCCccccEEEecCcccCCCCCcccccCcCCcEEEeecCccCCCCCCCcCCCCCcceeeccCceeec
Q 005278 213 LGSNKLTSTMPSSFGSLEYVLYINLSANSLNGSLPSNIQNLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSLADNQFQG 292 (704)
Q Consensus 213 l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 292 (704)
+++|++++. +. +.. ++|++|++++|.+++. ..+..+++|+.|++++|++++ ++ .+..+++|+.|++++|++++
T Consensus 92 L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 92 VNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCB
T ss_pred CCCCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcc
Confidence 555555532 21 111 5555555555555532 235555555555555555553 22 45555555555555555554
Q ss_pred cCCcccccccccceEEecccCCCCC
Q 005278 293 PVPKSFGSLISLESLDLSRNNLSGE 317 (704)
Q Consensus 293 ~~p~~~~~l~~L~~L~l~~N~l~~~ 317 (704)
. ..+..+++|+.|++++|++++.
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEECC
T ss_pred h--HHhccCCCCCEEeCCCCcccCC
Confidence 3 4455555555555555555544
No 372
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.76 E-value=1.7e-19 Score=205.58 Aligned_cols=188 Identities=21% Similarity=0.254 Sum_probs=120.1
Q ss_pred ecCCcccccCChhhhcCCCCCEEEccCCcCccccChhhcCCCCcCeeeccCcccCCCCCccccCCCCCCEEEcCCCcCCc
Q 005278 117 AYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNGTIPTAVGRLRRLQGLYLHGNKLQGSIPYDLCHLEGLSELNLNGNKLCG 196 (704)
Q Consensus 117 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 196 (704)
+..|.+. ..+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.|+ .+|..|..+++|++|+|++|+|+
T Consensus 208 ~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~- 283 (727)
T 4b8c_D 208 DIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT- 283 (727)
T ss_dssp ---------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-
T ss_pred cccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-
Confidence 3344444 56778888999999999999988 66777778999999999999998 78888999999999999999999
Q ss_pred cCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCcccCCCCCcccccCcC-CcEEEeecCccCCCCCCCcC
Q 005278 197 HVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLNGSLPSNIQNLKV-LTNLDLSRNQLSGDIPTTIG 275 (704)
Q Consensus 197 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~ 275 (704)
.+|..|..+++|+.|+|++|.|+ .+|..|+.+++|+.|+|++|.+++.+|..+..+.. +..|+|++|.+++.+|..
T Consensus 284 ~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~-- 360 (727)
T 4b8c_D 284 SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE-- 360 (727)
T ss_dssp SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--
T ss_pred ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc--
Confidence 77888999999999999999997 67778999999999999999999888887765432 234789999999888764
Q ss_pred CCCCcceeeccCc--------eeeccCCcccccccccceEEecccCCC
Q 005278 276 GLENLETLSLADN--------QFQGPVPKSFGSLISLESLDLSRNNLS 315 (704)
Q Consensus 276 ~l~~L~~L~L~~n--------~l~~~~p~~~~~l~~L~~L~l~~N~l~ 315 (704)
|+.|+++.| .+.+..+..+..+.++....+++|-+.
T Consensus 361 ----l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 361 ----RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp ---------------------------------------------CCC
T ss_pred ----cceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 445666666 333344444455666666667777654
No 373
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=99.75 E-value=7.2e-19 Score=174.80 Aligned_cols=138 Identities=21% Similarity=0.250 Sum_probs=106.5
Q ss_pred CCCccccccccCceEEEEEEE-CCCCE--EEEEEeeccchh------------------------hhHHHHHHHHHHHhc
Q 005278 416 GFNECNLLGTGSFGSVYKGTL-FDGTN--VAIKVFNLQLER------------------------ASRSFDSECEILRSI 468 (704)
Q Consensus 416 ~~~~~~~ig~G~~g~V~~~~~-~~~~~--vavK~~~~~~~~------------------------~~~~~~~e~~~l~~l 468 (704)
-|+..+.||+|+||.||+|.. .+|+. ||||+++..... ....+.+|++.++++
T Consensus 48 ~~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l 127 (258)
T 1zth_A 48 ITAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERA 127 (258)
T ss_dssp EEEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHH
T ss_pred chhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHH
Confidence 356778999999999999997 68989 999987543111 113688999999999
Q ss_pred CCCCC--ceEEeeeeeCCeEEEEEeccCC-C----CHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCC
Q 005278 469 RHRNL--IKIISNCCNIDFKALVLEFMPN-G----SLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDL 541 (704)
Q Consensus 469 ~h~ni--v~l~~~~~~~~~~~lv~e~~~~-g----sL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dl 541 (704)
+|+++ ...+++ +..++||||+.+ | +|.++... .++.....++.|++.|+.|||. +.+|+||||
T Consensus 128 ~~~~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~~~----~~~~~~~~i~~qi~~~l~~lH~--~~givHrDl 197 (258)
T 1zth_A 128 KEAGVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELGRE----LKELDVEGIFNDVVENVKRLYQ--EAELVHADL 197 (258)
T ss_dssp HHTTCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHGGG----GGGSCHHHHHHHHHHHHHHHHH--TSCEECSSC
T ss_pred HhCCCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHhhc----cChHHHHHHHHHHHHHHHHHHH--HCCEEeCCC
Confidence 88754 444442 345899999942 4 67665432 2244567899999999999951 578999999
Q ss_pred CCCCeeeCCCCcEEEeeeccceec
Q 005278 542 KPNNILLDENMTAHVSDFGISKLL 565 (704)
Q Consensus 542 k~~Nil~~~~~~~kl~Dfgla~~~ 565 (704)
||+|||++. .++|+|||+|...
T Consensus 198 kp~NILl~~--~~~liDFG~a~~~ 219 (258)
T 1zth_A 198 SEYNIMYID--KVYFIDMGQAVTL 219 (258)
T ss_dssp STTSEEESS--SEEECCCTTCEET
T ss_pred CHHHEEEcC--cEEEEECcccccC
Confidence 999999998 9999999999865
No 374
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.75 E-value=5e-17 Score=171.63 Aligned_cols=264 Identities=10% Similarity=0.095 Sum_probs=137.6
Q ss_pred CCCCEEecCCCcCcccCCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccCCCCC
Q 005278 6 PNLKYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTNCR 85 (704)
Q Consensus 6 ~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~l~ 85 (704)
..++.+.+.++ ++.+-..+|.+. +|+.+.|..+ ++.+...+|.+. +|+.+.+.. .+..++..+ |.+|+
T Consensus 113 ~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~a-------F~~c~ 180 (401)
T 4fdw_A 113 KGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDI-------FYYCY 180 (401)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSST-------TTTCT
T ss_pred CCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHH-------hhCcc
Confidence 44555555543 333445566653 5666666554 555666666663 566666654 555555444 66666
Q ss_pred CCcEEEccCCCCcccCChhhhhcccccceEEecCCcccccCChhhhcCCCCCEEEccCCcCccccChhhcCCCCcCeeec
Q 005278 86 NLTVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNGTIPTAVGRLRRLQGLYL 165 (704)
Q Consensus 86 ~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 165 (704)
+|+.++|+.|++.......|.. .+|+.+.+.++ +......+|.++++|+.+++..| ++.+...+|.+ .+
T Consensus 181 ~L~~l~l~~n~l~~I~~~aF~~--~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~------ 249 (401)
T 4fdw_A 181 NLKKADLSKTKITKLPASTFVY--AGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SG------ 249 (401)
T ss_dssp TCCEEECTTSCCSEECTTTTTT--CCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CC------
T ss_pred cCCeeecCCCcceEechhhEee--cccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CC------
Confidence 6666666666666444444442 34555555422 44444444555555555555432 33333334444 44
Q ss_pred cCcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCC-----CCCCCcccCCccccEEEecCc
Q 005278 166 HGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLT-----STMPSSFGSLEYVLYINLSAN 240 (704)
Q Consensus 166 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~l~~N 240 (704)
|+.+.|. +.++.....+|.++++|+.+.+.+|.+. .+....|.++++|+.++|. +
T Consensus 250 ------------------L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~ 309 (401)
T 4fdw_A 250 ------------------ITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-E 309 (401)
T ss_dssp ------------------CSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-T
T ss_pred ------------------ccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-C
Confidence 4444442 2233233344445555555555444432 2344455555555555555 2
Q ss_pred ccCCCCCcccccCcCCcEEEeecCccCCCCCCCcCCCCCcceeeccCceeeccCCccccccc-ccceEEecccCC
Q 005278 241 SLNGSLPSNIQNLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSLADNQFQGPVPKSFGSLI-SLESLDLSRNNL 314 (704)
Q Consensus 241 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~l~~N~l 314 (704)
.++.....+|.++++|+.++|..| ++.....+|.++ +|+.+++.+|.+....+..|..++ +++.|.+..+.+
T Consensus 310 ~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 310 SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 344444555556666666666433 443445556666 666666666665544445555553 456666655543
No 375
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.74 E-value=1.7e-18 Score=179.13 Aligned_cols=265 Identities=14% Similarity=0.113 Sum_probs=166.1
Q ss_pred CCCCCCEEeccCccccccCchhhcC-CCCCCEEecccccCCCcccchhhcccccCCCCCCCcEEEccCCCCcccCChhhh
Q 005278 28 NASKLIMLDLSSNSFSGLIPNTFGN-LGSLQVLSLAYNYLMTESSAAKWNFLSSLTNCRNLTVLGLASNPLRGILPPLIG 106 (704)
Q Consensus 28 ~l~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~ 106 (704)
.+.+|++|.++++ +.......+.. +++|++|||++|+|...... -..++.+..+.+..|.| ....|.
T Consensus 23 ~~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~--------~~~~~~~~~~~~~~~~I---~~~aF~ 90 (329)
T 3sb4_A 23 EANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGK--------AGTYPNGKFYIYMANFV---PAYAFS 90 (329)
T ss_dssp HHHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEES--------SSSSGGGCCEEECTTEE---CTTTTE
T ss_pred hhCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCc--------ccccccccccccccccc---CHHHhc
Confidence 3677888888865 33233334444 78899999999988721111 11122245555555532 223333
Q ss_pred h-------cccccceEEecCCcccccCChhhhcCCCCCEEEccCCcCccccChhhcCCCCcCeeeccCccc----CCCCC
Q 005278 107 N-------FSASLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNGTIPTAVGRLRRLQGLYLHGNKL----QGSIP 175 (704)
Q Consensus 107 ~-------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l----~~~~~ 175 (704)
. -+.+|++|.|.+ .++...+.+|.+|++|+.|++++|.+..+.+.+|.+..++..+.+..+.. .....
T Consensus 91 ~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~ 169 (329)
T 3sb4_A 91 NVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEH 169 (329)
T ss_dssp EEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTT
T ss_pred ccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccc
Confidence 3 034677777777 77777777788888888888888877766677777777777666655322 21223
Q ss_pred ccccCCCCCC-EEEcC-------------------------CCcCCccCCccc-cCcCCCCEEEecCccCCCCCCCcccC
Q 005278 176 YDLCHLEGLS-ELNLN-------------------------GNKLCGHVPPCL-ASLTSLRRLHLGSNKLTSTMPSSFGS 228 (704)
Q Consensus 176 ~~l~~l~~L~-~L~L~-------------------------~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~ 228 (704)
..|.++.+|+ .+.+. ++-.. .....+ ..+++|+.|+|++|+++.+....|.+
T Consensus 170 ~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~ 248 (329)
T 3sb4_A 170 FAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQ 248 (329)
T ss_dssp SCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTT
T ss_pred cccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhC
Confidence 3344444444 23332 21110 000011 12577888888887777666677777
Q ss_pred CccccEEEecCcccCCCCCcccccCcCCc-EEEeecCccCCCCCCCcCCCCCcceeeccCceeeccCCcccccccccceE
Q 005278 229 LEYVLYINLSANSLNGSLPSNIQNLKVLT-NLDLSRNQLSGDIPTTIGGLENLETLSLADNQFQGPVPKSFGSLISLESL 307 (704)
Q Consensus 229 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 307 (704)
+++|+.|+|.+| ++.....+|.++++|+ .+++.+ .++...+.+|.++++|+.|++++|+++...+..|.++++|+.+
T Consensus 249 ~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 249 KKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred CCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence 888888888777 6666677777787787 888877 6665566777888888888887787776666777777777776
Q ss_pred E
Q 005278 308 D 308 (704)
Q Consensus 308 ~ 308 (704)
+
T Consensus 327 y 327 (329)
T 3sb4_A 327 Y 327 (329)
T ss_dssp E
T ss_pred c
Confidence 5
No 376
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=1.4e-17 Score=172.12 Aligned_cols=242 Identities=13% Similarity=0.073 Sum_probs=152.3
Q ss_pred CCCCCEEecCCCcCc--------------------ccCCccccC--------CCCCCEEeccCccccccCchhhcCCCCC
Q 005278 5 LPNLKYLTLFDNKLS--------------------GTIPNSITN--------ASKLIMLDLSSNSFSGLIPNTFGNLGSL 56 (704)
Q Consensus 5 l~~l~~L~l~~~~i~--------------------~~~~~~~~~--------l~~L~~L~L~~n~i~~~~~~~~~~l~~L 56 (704)
+++|+.|||++|+|. .+-..+|.+ +++|++|+|.+ .++.+...+|.++++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 789999999999988 222334444 55555555554 4444555555555555
Q ss_pred CEEecccccCCCcccchhhcccccCCCCCCCcEEEccCCC----CcccCChhhhhcccccc-eEEecCCcccccCChhh-
Q 005278 57 QVLSLAYNYLMTESSAAKWNFLSSLTNCRNLTVLGLASNP----LRGILPPLIGNFSASLQ-EFYAYGCKLRGNIPQEI- 130 (704)
Q Consensus 57 ~~L~L~~n~i~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~----i~~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~~~- 130 (704)
+.|++++|.+..++..+ |..+.++.++.+..+. ........|.... .|+ .+.+.... .++..+
T Consensus 127 ~~l~l~~n~i~~i~~~a-------F~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~-~L~~~i~~~~~~---~l~~~~~ 195 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEA-------LADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE-PLETTIQVGAMG---KLEDEIM 195 (329)
T ss_dssp CEEEBCCSSCCEECTTS-------SCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC-CCEEEEEECTTC---CHHHHHH
T ss_pred ceEEcCCCCccccchhh-------hcCCCceEEecCcchhhhhcccccccccccccc-ccceeEEecCCC---cHHHHHh
Confidence 55555555554444433 4444444444443311 1111111121111 122 22222111 111111
Q ss_pred ---hcCCCCCEEEccCCcCccccChhh-cCCCCcCeeeccCcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcC
Q 005278 131 ---GNLSGMIVFDLNGCDLNGTIPTAV-GRLRRLQGLYLHGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLT 206 (704)
Q Consensus 131 ---~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 206 (704)
....++..+.+.++-.. .....+ ..+++|+.|+|++|+++...+.+|.++++|++|+|.+| ++...+.+|.+++
T Consensus 196 ~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~ 273 (329)
T 3sb4_A 196 KAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCG 273 (329)
T ss_dssp HTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred hcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCCh
Confidence 13456677777766333 222222 24789999999999998666678999999999999988 7766677899999
Q ss_pred CCC-EEEecCccCCCCCCCcccCCccccEEEecCcccCCCCCcccccCcCCcEEEe
Q 005278 207 SLR-RLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLNGSLPSNIQNLKVLTNLDL 261 (704)
Q Consensus 207 ~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 261 (704)
+|+ .+++.+ .++.+.+..|.++++|+.|+++.|.++...+.+|.++++|+.++.
T Consensus 274 ~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 274 RLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred hccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 999 999988 777777889999999999999999998888889999999998863
No 377
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=1.3e-18 Score=198.28 Aligned_cols=184 Identities=21% Similarity=0.264 Sum_probs=79.3
Q ss_pred CCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCccc--chhhcccccCCCCCCCcEEEccCCCCcccCChhhhh
Q 005278 30 SKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESS--AAKWNFLSSLTNCRNLTVLGLASNPLRGILPPLIGN 107 (704)
Q Consensus 30 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~ 107 (704)
+.++.|+|.+|.+..+ +..+ |+.++|++|.|..... ...+..+..+..+++|+.|+|++|.+. .+|..+..
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~~-----l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~ 245 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQAL-----LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFK 245 (727)
T ss_dssp -------------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGG
T ss_pred CccceEEeeCCCCCcc-hhhH-----hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcC
Confidence 5567777777777753 2222 3344444444333210 000112334666777777777777776 44444444
Q ss_pred cccccceEEecCCcccccCChhhhcCCCCCEEEccCCcCccccChhhcCCCCcCeeeccCcccCCCCCccccCCCCCCEE
Q 005278 108 FSASLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNGTIPTAVGRLRRLQGLYLHGNKLQGSIPYDLCHLEGLSEL 187 (704)
Q Consensus 108 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 187 (704)
+ .+|++|+|++|.++ .+|..|+++++|++|+|++|.|+ .+|..|+.+++|++|+|++|.|+ .+|..|..+++|++|
T Consensus 246 l-~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L 321 (727)
T 4b8c_D 246 Y-DFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFL 321 (727)
T ss_dssp C-CSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCE
T ss_pred C-CCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEE
Confidence 3 24566666666555 55555666666666666666666 45666666666666666666665 455556666666666
Q ss_pred EcCCCcCCccCCccccCcC-CCCEEEecCccCCCCCCC
Q 005278 188 NLNGNKLCGHVPPCLASLT-SLRRLHLGSNKLTSTMPS 224 (704)
Q Consensus 188 ~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~ 224 (704)
+|++|.|++.+|..+..+. .+..|+|++|.+++.+|.
T Consensus 322 ~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 322 GVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp ECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred eCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 6666666655555443321 112245555555554443
No 378
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=3.9e-17 Score=154.54 Aligned_cols=129 Identities=29% Similarity=0.371 Sum_probs=78.1
Q ss_pred CeeeccCcccCCCCCccccCCCCCCEEEcCCCcCCccCCc-cccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecC
Q 005278 161 QGLYLHGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPP-CLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSA 239 (704)
Q Consensus 161 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 239 (704)
+.+++++|+++ .+|..+.. +|++|++++|++++..+. .+..+++|+.|+|++|.|++..|..|..+++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 56667777665 45554432 666666666666644443 356666666666666666666566666666666666666
Q ss_pred cccCCCCCcccccCcCCcEEEeecCccCCCCCCCcCCCCCcceeeccCceeec
Q 005278 240 NSLNGSLPSNIQNLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSLADNQFQG 292 (704)
Q Consensus 240 N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 292 (704)
|.+++..+..|..+++|+.|+|++|++++..|..+..+++|+.|+|++|.+.+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 66665555555556666666666666655555555555556666666665554
No 379
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.71 E-value=5.5e-16 Score=163.67 Aligned_cols=254 Identities=12% Similarity=0.092 Sum_probs=204.0
Q ss_pred cCCCCCCEEecccccCCCcccchhhcccccCCCCCCCcEEEccCCCCcccCChhhhhcccccceEEecCCcccccCChhh
Q 005278 51 GNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTNCRNLTVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEI 130 (704)
Q Consensus 51 ~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 130 (704)
.....++.+.+.. .++.++..+ |.++ +|+.+.|..+ +..+....|... +|+.+.+.+ .+......+|
T Consensus 110 ~~~~~l~~i~ip~-~i~~I~~~a-------F~~~-~L~~i~l~~~-i~~I~~~aF~~~--~L~~i~lp~-~l~~I~~~aF 176 (401)
T 4fdw_A 110 EILKGYNEIILPN-SVKSIPKDA-------FRNS-QIAKVVLNEG-LKSIGDMAFFNS--TVQEIVFPS-TLEQLKEDIF 176 (401)
T ss_dssp EECSSCSEEECCT-TCCEECTTT-------TTTC-CCSEEECCTT-CCEECTTTTTTC--CCCEEECCT-TCCEECSSTT
T ss_pred EecCCccEEEECC-ccCEehHhh-------cccC-CccEEEeCCC-ccEECHHhcCCC--CceEEEeCC-CccEehHHHh
Confidence 4456677777764 466666655 6665 6888888766 666666677663 588888875 6777778899
Q ss_pred hcCCCCCEEEccCCcCccccChhhcCCCCcCeeeccCcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCE
Q 005278 131 GNLSGMIVFDLNGCDLNGTIPTAVGRLRRLQGLYLHGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRR 210 (704)
Q Consensus 131 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 210 (704)
.+|++|+.++|++|.++.+...+|. .++|+.+.|..+ ++.....+|.++++|+.+++.+| ++.....+|.+ .+|+.
T Consensus 177 ~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~ 252 (401)
T 4fdw_A 177 YYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITT 252 (401)
T ss_dssp TTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSE
T ss_pred hCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccE
Confidence 9999999999999999977677777 589999999855 77677788999999999999976 56466677877 89999
Q ss_pred EEecCccCCCCCCCcccCCccccEEEecCcccC-----CCCCcccccCcCCcEEEeecCccCCCCCCCcCCCCCcceeec
Q 005278 211 LHLGSNKLTSTMPSSFGSLEYVLYINLSANSLN-----GSLPSNIQNLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSL 285 (704)
Q Consensus 211 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 285 (704)
+.+. |.++.+....|.++++|+.+++.+|.+. ......|.++++|+.+++. +.++.....+|.++.+|+.++|
T Consensus 253 i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 253 VKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp EEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEE
T ss_pred EEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEE
Confidence 9994 5677677889999999999999998875 4667889999999999999 4587677789999999999999
Q ss_pred cCceeeccCCcccccccccceEEecccCCCCCCCCCcccc
Q 005278 286 ADNQFQGPVPKSFGSLISLESLDLSRNNLSGEIPKNFSAQ 325 (704)
Q Consensus 286 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~ 325 (704)
..| ++......|.++ +|+.+++++|.+....+..|...
T Consensus 331 p~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~ 368 (401)
T 4fdw_A 331 PAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGF 368 (401)
T ss_dssp CTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCS
T ss_pred Ccc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCC
Confidence 666 766777889999 99999999998876555555443
No 380
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=3.2e-17 Score=155.14 Aligned_cols=130 Identities=26% Similarity=0.391 Sum_probs=80.9
Q ss_pred CEEEccCCcCccccChhhcCCCCcCeeeccCcccCCCCCc-cccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecC
Q 005278 137 IVFDLNGCDLNGTIPTAVGRLRRLQGLYLHGNKLQGSIPY-DLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGS 215 (704)
Q Consensus 137 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 215 (704)
+++++++|+++ .+|..+. .+|++|+|++|+|++..+. .+..+++|++|+|++|+|++..|..|..+++|+.|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 56666666665 4444333 2666666666666644433 356666666666666666655566666666666666666
Q ss_pred ccCCCCCCCcccCCccccEEEecCcccCCCCCcccccCcCCcEEEeecCccCCC
Q 005278 216 NKLTSTMPSSFGSLEYVLYINLSANSLNGSLPSNIQNLKVLTNLDLSRNQLSGD 269 (704)
Q Consensus 216 n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 269 (704)
|+|++..+..|..+++|++|+|++|.+++..|..|..+++|+.|++++|++.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 666666666666666666666666666666666666666666666666666643
No 381
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.68 E-value=9.3e-17 Score=148.56 Aligned_cols=132 Identities=24% Similarity=0.260 Sum_probs=73.5
Q ss_pred CCCCEEEccCCcCc-cccChhhcCCCCcCeeeccCcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEE
Q 005278 134 SGMIVFDLNGCDLN-GTIPTAVGRLRRLQGLYLHGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLH 212 (704)
Q Consensus 134 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 212 (704)
++|++|++++|.+. +.+|..+..+++|+.|+|++|.+++. ..+..+++|++|+|++|++++.+|..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 55666666666665 44555556666666666666666533 4555666666666666666644555555566666666
Q ss_pred ecCccCCCCCC-CcccCCccccEEEecCcccCCCCC---cccccCcCCcEEEeecCccC
Q 005278 213 LGSNKLTSTMP-SSFGSLEYVLYINLSANSLNGSLP---SNIQNLKVLTNLDLSRNQLS 267 (704)
Q Consensus 213 l~~n~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~---~~~~~l~~L~~L~l~~n~l~ 267 (704)
+++|.+++... ..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 66666654211 445555555555555555553332 24445555555555555554
No 382
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.67 E-value=1.5e-16 Score=147.24 Aligned_cols=132 Identities=27% Similarity=0.250 Sum_probs=98.8
Q ss_pred CCCCEEEcCCCcCC-ccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCcccCCCCCcccccCcCCcEEE
Q 005278 182 EGLSELNLNGNKLC-GHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLNGSLPSNIQNLKVLTNLD 260 (704)
Q Consensus 182 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 260 (704)
++|++|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+.+.+|..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 56777777777776 55666677777777777777777754 6677777788888888887766777777788888888
Q ss_pred eecCccCCCC-CCCcCCCCCcceeeccCceeeccCC---cccccccccceEEecccCCC
Q 005278 261 LSRNQLSGDI-PTTIGGLENLETLSLADNQFQGPVP---KSFGSLISLESLDLSRNNLS 315 (704)
Q Consensus 261 l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~p---~~~~~l~~L~~L~l~~N~l~ 315 (704)
+++|++++.. +..+..+++|+.|++++|++++..+ ..+..+++|+.|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 8888887432 2677788888888888888875444 36778888888888888775
No 383
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.65 E-value=5.7e-16 Score=146.44 Aligned_cols=127 Identities=25% Similarity=0.355 Sum_probs=74.5
Q ss_pred CeeeccCcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCc
Q 005278 161 QGLYLHGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSAN 240 (704)
Q Consensus 161 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 240 (704)
+.+++++|+++ .+|..+. ++|++|+|++|+|+ .+|..|..+++|+.|+|++|.|++..+..|..+++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 45666677666 4554443 46666666666666 45566666666666666666666555555666666666666666
Q ss_pred ccCCCCCcccccCcCCcEEEeecCccCCCCCCCcCCCCCcceeeccCceee
Q 005278 241 SLNGSLPSNIQNLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSLADNQFQ 291 (704)
Q Consensus 241 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 291 (704)
.+++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 665555555555555555555555555333334555555555555555554
No 384
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.65 E-value=9.3e-16 Score=144.97 Aligned_cols=128 Identities=26% Similarity=0.335 Sum_probs=83.0
Q ss_pred CEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCcccCCCCCcccccCcCCcEEEeecC
Q 005278 185 SELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLNGSLPSNIQNLKVLTNLDLSRN 264 (704)
Q Consensus 185 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~n 264 (704)
+.+++++|.++ .+|..+. ++|+.|++++|.++ .+|..|..+++|+.|+|++|.+++..+..|.++++|+.|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 45666666666 4454332 46666777777666 45566666666777777777766666666666666777777777
Q ss_pred ccCCCCCCCcCCCCCcceeeccCceeeccCCcccccccccceEEecccCCCC
Q 005278 265 QLSGDIPTTIGGLENLETLSLADNQFQGPVPKSFGSLISLESLDLSRNNLSG 316 (704)
Q Consensus 265 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 316 (704)
++++..+..|.++++|+.|+|++|+|++..+..|..+++|+.|++++|++.+
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 7665555666666677777777776665444556666667777777776664
No 385
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.65 E-value=9.7e-16 Score=142.97 Aligned_cols=113 Identities=30% Similarity=0.313 Sum_probs=56.5
Q ss_pred CCCEEEecCccCCCCCCCcccCCccccEEEecCcccCCCCCcccccCcCCcEEEeecCccCCCCCCCcCCCCCcceeecc
Q 005278 207 SLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLNGSLPSNIQNLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSLA 286 (704)
Q Consensus 207 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 286 (704)
+|+.|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|++++..+..+..+++|+.|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 44444444444443333344444444444444444443333444455555555555555554444445555555555555
Q ss_pred CceeeccCCcccccccccceEEecccCCCCCCC
Q 005278 287 DNQFQGPVPKSFGSLISLESLDLSRNNLSGEIP 319 (704)
Q Consensus 287 ~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 319 (704)
+|++++..+..+..+++|+.|++++|++.+..|
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 109 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 555554333344555556666666665555443
No 386
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.64 E-value=1.4e-16 Score=144.03 Aligned_cols=127 Identities=25% Similarity=0.263 Sum_probs=69.8
Q ss_pred CCCCEEEcCCCcCC-ccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCcccCCCCCcccccCcCCcEEE
Q 005278 182 EGLSELNLNGNKLC-GHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLNGSLPSNIQNLKVLTNLD 260 (704)
Q Consensus 182 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 260 (704)
++|++|++++|.++ +.+|..+..+++|+.|++++|.+++. ..++.+++|++|++++|.+++.+|..+..+++|+.|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34455555555544 34444445555555555555555433 4455555555555555555544555555566666666
Q ss_pred eecCccCCC-CCCCcCCCCCcceeeccCceeeccCC---cccccccccceEEec
Q 005278 261 LSRNQLSGD-IPTTIGGLENLETLSLADNQFQGPVP---KSFGSLISLESLDLS 310 (704)
Q Consensus 261 l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p---~~~~~l~~L~~L~l~ 310 (704)
+++|++++. .+..++.+++|+.|++++|++++..+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 666666532 23556666666666666666664443 356666666666654
No 387
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.63 E-value=2e-15 Score=140.82 Aligned_cols=131 Identities=24% Similarity=0.294 Sum_probs=86.5
Q ss_pred CeeeccCcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCc
Q 005278 161 QGLYLHGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSAN 240 (704)
Q Consensus 161 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 240 (704)
+.+++++|+++ .+|..+. ++|++|++++|++++..+..+..+++|+.|++++|.+++..+..|..+++|++|++++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 45555555555 3343332 46666666666666544455666666666666666666555555666777777777777
Q ss_pred ccCCCCCcccccCcCCcEEEeecCccCCCCCCCcCCCCCcceeeccCceeeccC
Q 005278 241 SLNGSLPSNIQNLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSLADNQFQGPV 294 (704)
Q Consensus 241 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 294 (704)
.+++..+..+..+++|+.|++++|++++..+..+..+++|+.|+|++|++.+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 777666666677777888888888887555555677888888888888877543
No 388
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=1.7e-15 Score=136.98 Aligned_cols=128 Identities=21% Similarity=0.214 Sum_probs=73.0
Q ss_pred CCCCEEeccCcccc-ccCchhhcCCCCCCEEecccccCCCcccchhhcccccCCCCCCCcEEEccCCCCcccCChhhhhc
Q 005278 30 SKLIMLDLSSNSFS-GLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTNCRNLTVLGLASNPLRGILPPLIGNF 108 (704)
Q Consensus 30 ~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~ 108 (704)
++|++|++++|.++ +.+|..|..+++|++|++++|.++.. . .+..+++|++|+|++|++.+.+|..+..+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~-------~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l 87 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--A-------NLPKLNKLKKLELSDNRVSGGLEVLAEKC 87 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--T-------TCCCCTTCCEEECCSSCCCSCTHHHHHHC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--h-------hhhcCCCCCEEECCCCcccchHHHHhhhC
Confidence 44555555555554 33444445555555555555555443 1 14455555555555555554444444333
Q ss_pred ccccceEEecCCccccc-CChhhhcCCCCCEEEccCCcCccccC---hhhcCCCCcCeeeccC
Q 005278 109 SASLQEFYAYGCKLRGN-IPQEIGNLSGMIVFDLNGCDLNGTIP---TAVGRLRRLQGLYLHG 167 (704)
Q Consensus 109 ~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~ 167 (704)
++|++|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|++++
T Consensus 88 -~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 88 -PNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp -TTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred -CCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 2455555555555542 23567778888888888888876655 5678888888888763
No 389
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=99.59 E-value=3.6e-16 Score=160.77 Aligned_cols=137 Identities=14% Similarity=0.176 Sum_probs=100.5
Q ss_pred CCCCccccccccCceEEEEEEECCCCEEEEEEeeccch--------------hh--------hHHHHHHHHHHHhcCCCC
Q 005278 415 NGFNECNLLGTGSFGSVYKGTLFDGTNVAIKVFNLQLE--------------RA--------SRSFDSECEILRSIRHRN 472 (704)
Q Consensus 415 ~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~--------------~~--------~~~~~~e~~~l~~l~h~n 472 (704)
.-|++.++||+|+||.||+|...+|+.||||+++.... .. ......|...+.++.+.+
T Consensus 95 ~iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~g 174 (397)
T 4gyi_A 95 DVYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEG 174 (397)
T ss_dssp SCSEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CEEEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34889999999999999999988999999998753210 00 011345777777775544
Q ss_pred Cc--eEEeeeeeCCeEEEEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCC
Q 005278 473 LI--KIISNCCNIDFKALVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDE 550 (704)
Q Consensus 473 iv--~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~ 550 (704)
+. ..+++ ...++||||++++++.++.... ....++.|++.++.|||. .+||||||||.|||+++
T Consensus 175 v~vp~p~~~----~~~~LVME~i~G~~L~~l~~~~-------~~~~l~~qll~~l~~lH~---~gIVHrDLKp~NILl~~ 240 (397)
T 4gyi_A 175 FPVPEPIAQ----SRHTIVMSLVDALPMRQVSSVP-------DPASLYADLIALILRLAK---HGLIHGDFNEFNILIRE 240 (397)
T ss_dssp CSCCCEEEE----ETTEEEEECCSCEEGGGCCCCS-------CHHHHHHHHHHHHHHHHH---TTEECSCCSTTSEEEEE
T ss_pred CCCCeeeec----cCceEEEEecCCccHhhhcccH-------HHHHHHHHHHHHHHHHHH---CCCcCCCCCHHHEEEeC
Confidence 32 22222 1236999999998887654321 235678999999999964 68999999999999987
Q ss_pred CC----------cEEEeeeccceec
Q 005278 551 NM----------TAHVSDFGISKLL 565 (704)
Q Consensus 551 ~~----------~~kl~Dfgla~~~ 565 (704)
++ .+.|+||+-+...
T Consensus 241 dgd~~d~~~~~~~~~iID~~Q~V~~ 265 (397)
T 4gyi_A 241 EKDAEDPSSITLTPIIIXFPQMVSM 265 (397)
T ss_dssp EECSSCTTSEEEEEEECCCTTCEET
T ss_pred CCCcccccccccceEEEEeCCcccC
Confidence 76 3899999977654
No 390
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.57 E-value=2.2e-15 Score=140.32 Aligned_cols=131 Identities=19% Similarity=0.224 Sum_probs=71.4
Q ss_pred cCCCCCCEEEcCCCcCCccCCccccCc-CCCCEEEecCccCCCCCCCcccCCccccEEEecCcccCCCCCcccccCcCCc
Q 005278 179 CHLEGLSELNLNGNKLCGHVPPCLASL-TSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLNGSLPSNIQNLKVLT 257 (704)
Q Consensus 179 ~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 257 (704)
.++++|++|++++|+++ .++. +..+ ++|+.|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 16 ~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp ECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred CCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 33445555555555554 2232 2222 2555555555555533 3455555555555555555543333345566666
Q ss_pred EEEeecCccCCCCCC--CcCCCCCcceeeccCceeeccCCcc----cccccccceEEecccCCC
Q 005278 258 NLDLSRNQLSGDIPT--TIGGLENLETLSLADNQFQGPVPKS----FGSLISLESLDLSRNNLS 315 (704)
Q Consensus 258 ~L~l~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~p~~----~~~l~~L~~L~l~~N~l~ 315 (704)
.|++++|+++ .+|. .+..+++|+.|++++|+++ .+|.. +..+++|+.||+++|...
T Consensus 92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 6666666664 3443 5666666666666666665 34443 666677777777776654
No 391
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.57 E-value=3.3e-17 Score=156.05 Aligned_cols=155 Identities=23% Similarity=0.284 Sum_probs=104.7
Q ss_pred cCCCCcCeeeccCcccCCCCCc------cccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCCcccC
Q 005278 155 GRLRRLQGLYLHGNKLQGSIPY------DLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGS 228 (704)
Q Consensus 155 ~~l~~L~~L~L~~n~l~~~~~~------~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 228 (704)
.....++.++++.+.+++..|. .+..+++|++|+|++|.+++ +| .+..+++|+.|++++|.++ .+|..+..
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~ 91 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV 91 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc
Confidence 3344555555555555554444 56666667777777766664 44 5666677777777777776 45555666
Q ss_pred CccccEEEecCcccCCCCCcccccCcCCcEEEeecCccCCCCC-CCcCCCCCcceeeccCceeeccCCcc----------
Q 005278 229 LEYVLYINLSANSLNGSLPSNIQNLKVLTNLDLSRNQLSGDIP-TTIGGLENLETLSLADNQFQGPVPKS---------- 297 (704)
Q Consensus 229 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~p~~---------- 297 (704)
+++|++|++++|.+++ +| .+..+++|+.|++++|++++..+ ..+..+++|+.|++++|++++..|..
T Consensus 92 ~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~ 169 (198)
T 1ds9_A 92 ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV 169 (198)
T ss_dssp HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHH
T ss_pred CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHH
Confidence 6777777777777764 33 56777788888888888874222 36778888888888888887765543
Q ss_pred cccccccceEEecccCCCC
Q 005278 298 FGSLISLESLDLSRNNLSG 316 (704)
Q Consensus 298 ~~~l~~L~~L~l~~N~l~~ 316 (704)
+..+++|+.|| +|+++.
T Consensus 170 ~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 170 VKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHHCSSCSEEC--CGGGTT
T ss_pred HHhCCCcEEEC--CcccCH
Confidence 77888898886 777763
No 392
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.56 E-value=2.8e-15 Score=139.63 Aligned_cols=132 Identities=18% Similarity=0.127 Sum_probs=65.9
Q ss_pred CCCCCCCcEEEccCCCCcccCChhhhhcccccceEEecCCcccccCChhhhcCCCCCEEEccCCcCccccChhhcCCCCc
Q 005278 81 LTNCRNLTVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNGTIPTAVGRLRRL 160 (704)
Q Consensus 81 ~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 160 (704)
+.++.+|++|+|++|++... + .+..+.++|++|++++|.+++. ..+..+++|++|+|++|.+++..+..|..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i-~-~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI-E-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC-C-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCchh-H-HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 34455555555555555522 2 1222222344444444444432 345555566666666666654444444556666
Q ss_pred CeeeccCcccCCCCCc--cccCCCCCCEEEcCCCcCCccCCc----cccCcCCCCEEEecCccC
Q 005278 161 QGLYLHGNKLQGSIPY--DLCHLEGLSELNLNGNKLCGHVPP----CLASLTSLRRLHLGSNKL 218 (704)
Q Consensus 161 ~~L~L~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l 218 (704)
++|+|++|+|+ .+|. .+..+++|+.|++++|.++ ..|. .+..+++|+.|++++|.+
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 66666666654 3333 4555555555555555555 3333 244555555555555543
No 393
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.54 E-value=2.2e-13 Score=144.44 Aligned_cols=199 Identities=12% Similarity=0.060 Sum_probs=101.0
Q ss_pred hhhhhcccccceEEecCCcccccCChhhhcCCCCCEEEccCCcCccccChhhcCCCCcCeeeccCcccCCCCCccccCCC
Q 005278 103 PLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNGTIPTAVGRLRRLQGLYLHGNKLQGSIPYDLCHLE 182 (704)
Q Consensus 103 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 182 (704)
..|... .+|+.+.+.++. ......+|.++.+|+.+++..+ +..+...+|.+...|+.+.+..+... +........
T Consensus 156 ~aF~~c-~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~ 230 (394)
T 4fs7_A 156 EAFATC-ESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKT 230 (394)
T ss_dssp TTTTTC-TTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTC
T ss_pred hhhccc-CCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccC
Confidence 334433 357777775443 3355666777777777777655 44345556666666666666554332 122222334
Q ss_pred CCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCC---------------------cccCCccccEEEecCcc
Q 005278 183 GLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPS---------------------SFGSLEYVLYINLSANS 241 (704)
Q Consensus 183 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---------------------~~~~l~~L~~L~l~~N~ 241 (704)
+|+.+.+..+. +......+..+.+|+.+.+..+... .... .|..+.+|+.+.+.++
T Consensus 231 ~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~- 307 (394)
T 4fs7_A 231 GVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS- 307 (394)
T ss_dssp CCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-
T ss_pred CCceEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeeccccccccccccccccccc-
Confidence 45555444322 2122334444444555444443322 2233 4445555555555443
Q ss_pred cCCCCCcccccCcCCcEEEeecCccCCCCCCCcCCCCCcceeeccCceeeccCCcccccccccceEEecc
Q 005278 242 LNGSLPSNIQNLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSLADNQFQGPVPKSFGSLISLESLDLSR 311 (704)
Q Consensus 242 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~ 311 (704)
++.....+|.++.+|+.+++..+ ++.....+|.++.+|+.+++..| ++.....+|.++.+|+.+++..
T Consensus 308 i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 308 VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 33344455555555666655433 44333455555666666665554 4434445555556666655543
No 394
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.54 E-value=3.6e-17 Score=155.78 Aligned_cols=155 Identities=22% Similarity=0.313 Sum_probs=99.1
Q ss_pred hhcCCCCCEEEccCCcCccccCh------hhcCCCCcCeeeccCcccCCCCCccccCCCCCCEEEcCCCcCCccCCcccc
Q 005278 130 IGNLSGMIVFDLNGCDLNGTIPT------AVGRLRRLQGLYLHGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLA 203 (704)
Q Consensus 130 ~~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 203 (704)
+.....++.++++++.+.+..|. .|..+++|++|+|++|++++ +| .+..+++|++|++++|.++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 33444555555555555544444 66667777777777777764 45 6666677777777777776 4555566
Q ss_pred CcCCCCEEEecCccCCCCCCCcccCCccccEEEecCcccCCCCC-cccccCcCCcEEEeecCccCCCCCCC---------
Q 005278 204 SLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLNGSLP-SNIQNLKVLTNLDLSRNQLSGDIPTT--------- 273 (704)
Q Consensus 204 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~--------- 273 (704)
.+++|+.|++++|.+++ ++ .+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|++++.+|..
T Consensus 91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~ 168 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE 168 (198)
T ss_dssp HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHH
T ss_pred cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHH
Confidence 66777777777777764 23 46667777777777777764322 35667777777777777776554442
Q ss_pred -cCCCCCcceeeccCceee
Q 005278 274 -IGGLENLETLSLADNQFQ 291 (704)
Q Consensus 274 -~~~l~~L~~L~L~~n~l~ 291 (704)
+..+++|+.|| +|.++
T Consensus 169 ~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 169 VVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHCSSCSEEC--CGGGT
T ss_pred HHHhCCCcEEEC--CcccC
Confidence 66777777776 55554
No 395
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.47 E-value=1.2e-12 Score=138.61 Aligned_cols=271 Identities=15% Similarity=0.114 Sum_probs=184.1
Q ss_pred cCcccCCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccCCCCCCCcEEEccCCC
Q 005278 17 KLSGTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTNCRNLTVLGLASNP 96 (704)
Q Consensus 17 ~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~ 96 (704)
.++.+-..+|.++.+|+++.|.. .++.+...+|.++++|+.++|..+ ++.++..+ |.++.+|+.+.+..+
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~a-------F~~c~~L~~i~~p~~- 127 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCT-------FSGCYALKSILLPLM- 127 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTT-------TTTCTTCCCCCCCTT-
T ss_pred eEeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchh-------hcccccchhhcccCc-
Confidence 35556667899999999999974 588899999999999999999765 77777666 999999999887754
Q ss_pred CcccCChhhhhcccccceEEecCCcccccCChhhhcCCCCCEEEccCCcCccccChhhcCCCCcCeeeccCcccCCCCCc
Q 005278 97 LRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNGTIPTAVGRLRRLQGLYLHGNKLQGSIPY 176 (704)
Q Consensus 97 i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 176 (704)
+.......|.... +..... ...+......+|.++++|+.+.+.++. ..+...+|.++++|+.+.+..| ++.....
T Consensus 128 l~~i~~~aF~~~~--~~~~~~-~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~ 202 (394)
T 4fs7_A 128 LKSIGVEAFKGCD--FKEITI-PEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDY 202 (394)
T ss_dssp CCEECTTTTTTCC--CSEEEC-CTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTT
T ss_pred eeeecceeeeccc--cccccc-CccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCch
Confidence 4445556665542 333332 233344566789999999999998664 4466789999999999999877 5545667
Q ss_pred cccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCcccCCCCCcccccCcCC
Q 005278 177 DLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLNGSLPSNIQNLKVL 256 (704)
Q Consensus 177 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 256 (704)
.|.++..|+.+.+..+... +........+|+.+.+..+ ++......|..+..|+.+.+..+... .....|..+..+
T Consensus 203 ~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l 278 (394)
T 4fs7_A 203 CFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGL 278 (394)
T ss_dssp TTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTC
T ss_pred hhccccccceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eecccccccccc
Confidence 8999999999998877644 2333445678999998754 34456678888999999999877543 444445555555
Q ss_pred cEEEeecCccCCCCCCCcCCCCCcceeeccCceeeccCCcccccccccceEEec
Q 005278 257 TNLDLSRNQLSGDIPTTIGGLENLETLSLADNQFQGPVPKSFGSLISLESLDLS 310 (704)
Q Consensus 257 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~ 310 (704)
+.+....+.+. ...|.++.+|+.+.+.++ ++......|.++.+|+.+++.
T Consensus 279 ~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp 328 (394)
T 4fs7_A 279 KKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLP 328 (394)
T ss_dssp CEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCC
T ss_pred ceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeC
Confidence 55544443322 123444444444444433 332333444444444444443
No 396
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.47 E-value=1.6e-13 Score=126.59 Aligned_cols=105 Identities=26% Similarity=0.345 Sum_probs=61.3
Q ss_pred CCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCcccCCCCCcccccCcCCcEEEeec
Q 005278 184 LSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLNGSLPSNIQNLKVLTNLDLSR 263 (704)
Q Consensus 184 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 263 (704)
.+.+++++|.++ .+|..+. ++|+.|+|++|.|++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 456677777666 3454442 5666666666666665566666666666666666666554444555555555555555
Q ss_pred CccCCCCCCCcCCCCCcceeeccCceee
Q 005278 264 NQLSGDIPTTIGGLENLETLSLADNQFQ 291 (704)
Q Consensus 264 n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 291 (704)
|+|++..+..|..+++|+.|+|++|+++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 5555444444555555555555555554
No 397
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.45 E-value=3.7e-13 Score=124.25 Aligned_cols=106 Identities=27% Similarity=0.303 Sum_probs=55.1
Q ss_pred CEEEecCccCCCCCCCcccCCccccEEEecCcccCCCCCcccccCcCCcEEEeecCccCCCCCCCcCCCCCcceeeccCc
Q 005278 209 RRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLNGSLPSNIQNLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSLADN 288 (704)
Q Consensus 209 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 288 (704)
+.+++++|.++. +|..+. ++|++|+|++|.|++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|
T Consensus 12 ~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 455555555552 333332 45555555555555554555555555555555555555444444555555555555555
Q ss_pred eeeccCCcccccccccceEEecccCCCCC
Q 005278 289 QFQGPVPKSFGSLISLESLDLSRNNLSGE 317 (704)
Q Consensus 289 ~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 317 (704)
+|++..+..|..+++|+.|+|++|++.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 55544444455555555555555555544
No 398
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.44 E-value=3e-15 Score=156.50 Aligned_cols=188 Identities=18% Similarity=0.087 Sum_probs=117.7
Q ss_pred CCCCCEEecccccCCCcccchhhcccccCC-CCCCCcEEEccCCCCcccCChhhhhcccccceEEecCCcccccCChhh-
Q 005278 53 LGSLQVLSLAYNYLMTESSAAKWNFLSSLT-NCRNLTVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEI- 130 (704)
Q Consensus 53 l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~- 130 (704)
+++|++|+|++|.++...... +...+. ..++|++|+|++|.++......+....++|++|+|++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~---l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~ 147 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTV---VAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLR 147 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHH---HHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHH---HHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHH
Confidence 456777777777776544333 222222 235777777777777765555555544567777777777765444443
Q ss_pred ----hcCCCCCEEEccCCcCccc----cChhhcCCCCcCeeeccCcccCCCC----CccccCCCCCCEEEcCCCcCCcc-
Q 005278 131 ----GNLSGMIVFDLNGCDLNGT----IPTAVGRLRRLQGLYLHGNKLQGSI----PYDLCHLEGLSELNLNGNKLCGH- 197 (704)
Q Consensus 131 ----~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~- 197 (704)
...++|++|+|++|.|+.. ++..+...++|++|+|++|+|++.. +..+...++|++|+|++|.|++.
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g 227 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA 227 (372)
T ss_dssp HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH
T ss_pred HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH
Confidence 2457788888888887642 3444567788888888888887432 45566677888888888888743
Q ss_pred ---CCccccCcCCCCEEEecCccCCCCCCCcccCC---c--cccEEE--ecCcccC
Q 005278 198 ---VPPCLASLTSLRRLHLGSNKLTSTMPSSFGSL---E--YVLYIN--LSANSLN 243 (704)
Q Consensus 198 ---~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l---~--~L~~L~--l~~N~l~ 243 (704)
++..+...++|+.|+|++|.|+......+..+ . .|+.+. +..|.+.
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 23344556888888888888875433333322 1 155565 5555544
No 399
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.44 E-value=3.6e-13 Score=124.68 Aligned_cols=104 Identities=26% Similarity=0.376 Sum_probs=48.9
Q ss_pred CEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCcccCCCCCcccccCcCCcEEEeecC
Q 005278 185 SELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLNGSLPSNIQNLKVLTNLDLSRN 264 (704)
Q Consensus 185 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~n 264 (704)
+.+++++|+++ .+|..+. ++|+.|+|++|.|++..+..|..+++|++|+|++|.|++..+..|.++++|+.|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 34444444444 3333332 34444455555444444444444444444444444444333333444555555555555
Q ss_pred ccCCCCCCCcCCCCCcceeeccCceee
Q 005278 265 QLSGDIPTTIGGLENLETLSLADNQFQ 291 (704)
Q Consensus 265 ~l~~~~~~~~~~l~~L~~L~L~~n~l~ 291 (704)
+|++..+..|..+++|+.|+|++|++.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 555333333555555555555555554
No 400
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.43 E-value=6.4e-13 Score=123.03 Aligned_cols=104 Identities=27% Similarity=0.335 Sum_probs=56.7
Q ss_pred CeeeccCcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCc
Q 005278 161 QGLYLHGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSAN 240 (704)
Q Consensus 161 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 240 (704)
+.+++++|+++ .+|..+. ++|++|+|++|+|++..|..|..+++|+.|+|++|+|++..+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 34455555554 3344332 45555555555555444555555555555555555555444444555555666666666
Q ss_pred ccCCCCCcccccCcCCcEEEeecCccC
Q 005278 241 SLNGSLPSNIQNLKVLTNLDLSRNQLS 267 (704)
Q Consensus 241 ~l~~~~~~~~~~l~~L~~L~l~~n~l~ 267 (704)
.|++..+..|..+++|+.|+|++|++.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 655444444666666666666666665
No 401
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.43 E-value=6.1e-12 Score=133.25 Aligned_cols=110 Identities=14% Similarity=0.217 Sum_probs=69.0
Q ss_pred ccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCcccCCCCCcccccCcCCcEEEeecCccCCCCCCCcCCCCC
Q 005278 200 PCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSANSLNGSLPSNIQNLKVLTNLDLSRNQLSGDIPTTIGGLEN 279 (704)
Q Consensus 200 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 279 (704)
.+|.++.+|+.+.+.++... .....|.++++|+.+.+. +.++.....+|.++.+|+.+++..+ ++.....+|.++.+
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred ceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence 45666677777777655433 455566677777777775 3344455566667777777777654 44344566777777
Q ss_pred cceeeccCceeeccCCcccccccccceEEecccC
Q 005278 280 LETLSLADNQFQGPVPKSFGSLISLESLDLSRNN 313 (704)
Q Consensus 280 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~ 313 (704)
|+.+.+..+ ++......|.++.+|+.+++.+|.
T Consensus 336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 777777544 554445667777777777776654
No 402
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.40 E-value=2.7e-14 Score=149.23 Aligned_cols=167 Identities=16% Similarity=0.121 Sum_probs=128.9
Q ss_pred CCCCcEEEccCCCCcccCChhhhhc----ccccceEEecCCcccccCChhh-hcCCCCCEEEccCCcCccccChhh----
Q 005278 84 CRNLTVLGLASNPLRGILPPLIGNF----SASLQEFYAYGCKLRGNIPQEI-GNLSGMIVFDLNGCDLNGTIPTAV---- 154 (704)
Q Consensus 84 l~~L~~L~L~~n~i~~~~~~~~~~~----~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~---- 154 (704)
+++|++|+|++|.++......++.. ..+|++|+|++|.++......+ ..+++|++|+|++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 5689999999999987766666655 2479999999999976443333 356789999999999986544444
Q ss_pred -cCCCCcCeeeccCcccCCC----CCccccCCCCCCEEEcCCCcCCcc----CCccccCcCCCCEEEecCccCCCCC---
Q 005278 155 -GRLRRLQGLYLHGNKLQGS----IPYDLCHLEGLSELNLNGNKLCGH----VPPCLASLTSLRRLHLGSNKLTSTM--- 222 (704)
Q Consensus 155 -~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~--- 222 (704)
...++|++|+|++|.|+.. ++..+..+++|++|+|++|.|++. ++..+...++|+.|+|++|.|+...
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 3468899999999999743 344557789999999999999853 2456777889999999999998532
Q ss_pred -CCcccCCccccEEEecCcccCCCCCccc
Q 005278 223 -PSSFGSLEYVLYINLSANSLNGSLPSNI 250 (704)
Q Consensus 223 -~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 250 (704)
+..+...++|++|+|++|.|++.....+
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 3345567899999999999885444333
No 403
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.38 E-value=2.1e-11 Score=129.08 Aligned_cols=297 Identities=12% Similarity=0.145 Sum_probs=158.8
Q ss_pred cccCCccccCCC-CCCEEeccCccccccCchhhcCCCCCCEEeccccc---CCCcccchhhcccccCCCCCCCcEEEccC
Q 005278 19 SGTIPNSITNAS-KLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNY---LMTESSAAKWNFLSSLTNCRNLTVLGLAS 94 (704)
Q Consensus 19 ~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~---i~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 94 (704)
+.+-..+|.+.. .|+++.+..+ ++.+...+|.++++|+.+.+..|. ++.++..+ |..+.+|+.+.+..
T Consensus 52 t~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~a-------F~~c~~L~~i~~~~ 123 (394)
T 4gt6_A 52 SKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQA-------FMFCSELTDIPILD 123 (394)
T ss_dssp EEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTT-------TTTCTTCCBCGGGT
T ss_pred eEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhh-------chhcccceeeccCC
Confidence 333344566663 4777777543 566777777777777777776653 55555544 66677777666654
Q ss_pred CCCcccCChhhhhcccccceEEecCCcccccCChhhhcCCCCCEEEccCCcCccccChhhcCCCCcCeeeccCcccCCCC
Q 005278 95 NPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNGTIPTAVGRLRRLQGLYLHGNKLQGSI 174 (704)
Q Consensus 95 n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 174 (704)
+ +.......|... .+|+.+.+..+ +......+|.++..|+.+.+.++ +..+...+|.. .+|+.+.+..+-.. ..
T Consensus 124 ~-~~~I~~~aF~~c-~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~ 197 (394)
T 4gt6_A 124 S-VTEIDSEAFHHC-EELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IG 197 (394)
T ss_dssp T-CSEECTTTTTTC-TTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-EC
T ss_pred c-cceehhhhhhhh-cccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cc
Confidence 3 333333344433 35666666533 33355556666677777766644 33344444543 45666666544332 34
Q ss_pred CccccCCCCCCEEEcCCCcCCccCCcc--------------ccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecCc
Q 005278 175 PYDLCHLEGLSELNLNGNKLCGHVPPC--------------LASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSAN 240 (704)
Q Consensus 175 ~~~l~~l~~L~~L~L~~n~l~~~~~~~--------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 240 (704)
..++.++.++.......+.... .... +.....+..+.+.+ .++......|..+.+|+.+.+.++
T Consensus 198 ~~af~~c~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~ 275 (394)
T 4gt6_A 198 TNAFSECFALSTITSDSESYPA-IDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDS 275 (394)
T ss_dssp TTTTTTCTTCCEEEECCSSSCB-SSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTT
T ss_pred cchhhhccccceeccccccccc-ccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccc
Confidence 4455556666665555444331 1111 11112233333322 222234455666667777776655
Q ss_pred ccCCCCCcccccCcCCcEEEeecCccCCCCCCCcCCCCCcceeeccCceeeccCCcccccccccceEEecccCCCCCCCC
Q 005278 241 SLNGSLPSNIQNLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSLADNQFQGPVPKSFGSLISLESLDLSRNNLSGEIPK 320 (704)
Q Consensus 241 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 320 (704)
... ....+|.++++|+.+.+. +.++.....+|.++.+|+.++|..+ ++......|.++.+|+.+.+..+ ++..-..
T Consensus 276 ~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~ 351 (394)
T 4gt6_A 276 VVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPES 351 (394)
T ss_dssp CCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGG
T ss_pred cce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHh
Confidence 433 455566666777777664 3444344556667777777777654 44344566667777777776433 4333333
Q ss_pred CcccccccCcccccC
Q 005278 321 NFSAQSFLSNYALCG 335 (704)
Q Consensus 321 ~~~~~~~l~~~~l~g 335 (704)
.|.....|....+.+
T Consensus 352 aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 352 AFSNCTALNNIEYSG 366 (394)
T ss_dssp GGTTCTTCCEEEESS
T ss_pred HhhCCCCCCEEEECC
Confidence 455544444444443
No 404
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.27 E-value=7.9e-12 Score=130.05 Aligned_cols=103 Identities=30% Similarity=0.294 Sum_probs=60.5
Q ss_pred eeeccCc-ccCCCCCccccCCCCCCEEEcCC-CcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccEEEecC
Q 005278 162 GLYLHGN-KLQGSIPYDLCHLEGLSELNLNG-NKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLYINLSA 239 (704)
Q Consensus 162 ~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 239 (704)
.++++++ +|+ .+|. +..+++|++|+|++ |+|++..+..|..+++|+.|+|++|+|++..+..|.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3566665 666 4555 66666666666664 666655555666666666666666666665555666666666666666
Q ss_pred cccCCCCCcccccCcCCcEEEeecCccC
Q 005278 240 NSLNGSLPSNIQNLKVLTNLDLSRNQLS 267 (704)
Q Consensus 240 N~l~~~~~~~~~~l~~L~~L~l~~n~l~ 267 (704)
|.|++..+..|..++ |+.|+|++|++.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 666544444444433 555555555554
No 405
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Probab=99.25 E-value=3.8e-11 Score=119.55 Aligned_cols=147 Identities=13% Similarity=0.091 Sum_probs=115.7
Q ss_pred HHHHhCCCCccccccccCceEEEEEEECCCCEEEEEEeeccchhhhHHHHHHHHHHHhcC-CCCCceEEeeeeeCCeEEE
Q 005278 410 IQRATNGFNECNLLGTGSFGSVYKGTLFDGTNVAIKVFNLQLERASRSFDSECEILRSIR-HRNLIKIISNCCNIDFKAL 488 (704)
Q Consensus 410 ~~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~l 488 (704)
+.....+|......+.|+.+.||++... ++.+++|+...........+.+|+++++.+. +..+.++++++...+..++
T Consensus 9 l~~~l~~~~~~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~l 87 (263)
T 3tm0_A 9 LKKLIEKYRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNL 87 (263)
T ss_dssp HHHHHTTSEEEECCSCCSSSEEEEEECS-SCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEE
T ss_pred HHHHhccceeEeeccCCCCCeEEEEECC-CCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEE
Confidence 3445568888888999999999999744 7899999986533233456899999999994 6778899999998889999
Q ss_pred EEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhc-------------------------------------
Q 005278 489 VLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHG------------------------------------- 531 (704)
Q Consensus 489 v~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~------------------------------------- 531 (704)
||||++|.++.+.... ......++.++++++..||..
T Consensus 88 v~e~i~G~~l~~~~~~------~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (263)
T 3tm0_A 88 LMSEADGVLCSEEYED------EQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEED 161 (263)
T ss_dssp EEECCSSEEHHHHCCT------TTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGGSTT
T ss_pred EEEecCCeehhhccCC------cccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhcccccccccccccc
Confidence 9999999999876321 122346888999999999871
Q ss_pred -------------------CCCCcEecCCCCCCeeeCCCCcEEEeeeccce
Q 005278 532 -------------------HSTPMVHCDLKPNNILLDENMTAHVSDFGISK 563 (704)
Q Consensus 532 -------------------h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~ 563 (704)
....++|+|++|.||+++++..+.|+||+.+.
T Consensus 162 ~~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~ 212 (263)
T 3tm0_A 162 TPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSG 212 (263)
T ss_dssp CSSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCE
T ss_pred ccCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhcc
Confidence 11458999999999999876666799998765
No 406
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.23 E-value=1e-09 Score=115.55 Aligned_cols=285 Identities=9% Similarity=0.057 Sum_probs=173.5
Q ss_pred CCCEEecCCCcCcccCCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccCCCCCC
Q 005278 7 NLKYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTNCRN 86 (704)
Q Consensus 7 ~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~l~~ 86 (704)
+|+.+.+.. .++.+-..+|.++.+|++++|..+ ++.+...+|.+. +|+.+.+..+ +..++..+ |..+ +
T Consensus 47 ~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~a-------F~~~-~ 114 (379)
T 4h09_A 47 RISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYV-------FQGT-D 114 (379)
T ss_dssp GCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTT-------TTTC-C
T ss_pred CCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccce-------eccC-C
Confidence 455555543 244444556666666666666433 555666666655 4555555432 44444433 4443 5
Q ss_pred CcEEEccCCCCcccCChhhhhcccccceEEecCCcccccCChhhhcCCCCCEEEccCCcCccc------------cChhh
Q 005278 87 LTVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRGNIPQEIGNLSGMIVFDLNGCDLNGT------------IPTAV 154 (704)
Q Consensus 87 L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~------------~~~~~ 154 (704)
|+.+.+..+ +.......|... +|+...+..+ ++......+.++..++.+.+..+..... ....+
T Consensus 115 L~~i~lp~~-~~~i~~~~F~~~--~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (379)
T 4h09_A 115 LDDFEFPGA-TTEIGNYIFYNS--SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESY 190 (379)
T ss_dssp CSEEECCTT-CCEECTTTTTTC--CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEEC
T ss_pred cccccCCCc-cccccccccccc--eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccc
Confidence 666666544 222333333332 3444444432 3334555566667777666665443211 11122
Q ss_pred cCCCCcCeeeccCcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCCccccE
Q 005278 155 GRLRRLQGLYLHGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSLEYVLY 234 (704)
Q Consensus 155 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 234 (704)
.....+..+.+..+... .....+....+|+.+.+..+ ++......+.++..|+.+.+..+ ++......|.++.+|+.
T Consensus 191 ~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~ 267 (379)
T 4h09_A 191 PAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKT 267 (379)
T ss_dssp CTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred cccccccccccccceeE-Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcc
Confidence 33334444444333222 34456666778888888655 34355567788888999888776 55566778888888998
Q ss_pred EEecCcccCCCCCcccccCcCCcEEEeecCccCCCCCCCcCCCCCcceeeccCceeeccCCcccccccccceEEeccc
Q 005278 235 INLSANSLNGSLPSNIQNLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSLADNQFQGPVPKSFGSLISLESLDLSRN 312 (704)
Q Consensus 235 L~l~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N 312 (704)
+.+..+ +.......|.++++|+.+.+.++.++.....+|.++.+|+.+.|..+ ++.....+|.++.+|+.+.+..+
T Consensus 268 i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 268 LNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp EEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred cccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 888754 55466677888889999999888888666778889999999998765 55455678888888888877543
No 407
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.20 E-value=3.7e-11 Score=124.93 Aligned_cols=103 Identities=24% Similarity=0.224 Sum_probs=70.4
Q ss_pred EEEccCC-cCccccChhhcCCCCcCeeeccC-cccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecC
Q 005278 138 VFDLNGC-DLNGTIPTAVGRLRRLQGLYLHG-NKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGS 215 (704)
Q Consensus 138 ~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 215 (704)
.++++++ +|+ .+|. +..+++|+.|+|++ |+|++..+..|.++++|++|+|++|+|++..|..|.++++|+.|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4566666 666 4555 77777777777774 777755556677777777777777777766666677777777777777
Q ss_pred ccCCCCCCCcccCCccccEEEecCcccC
Q 005278 216 NKLTSTMPSSFGSLEYVLYINLSANSLN 243 (704)
Q Consensus 216 n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 243 (704)
|+|++..+..|..++ |+.|+|.+|.+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 777755555555554 777777777766
No 408
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=99.07 E-value=2.2e-10 Score=113.88 Aligned_cols=139 Identities=15% Similarity=0.072 Sum_probs=101.3
Q ss_pred hCCCCccccccccCceEEEEEEECCCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCC--CceEEeeeeeCCeEEEEEe
Q 005278 414 TNGFNECNLLGTGSFGSVYKGTLFDGTNVAIKVFNLQLERASRSFDSECEILRSIRHRN--LIKIISNCCNIDFKALVLE 491 (704)
Q Consensus 414 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n--iv~l~~~~~~~~~~~lv~e 491 (704)
..++......+.|..+.||++...+|+.+++|+.... ....+..|+++++.+.+.+ +.+++++....+..++|||
T Consensus 19 ~~~~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~---~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e 95 (264)
T 1nd4_A 19 LFGYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSG---ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLG 95 (264)
T ss_dssp TTTCEEEECSCTTSSCEEEEEECTTSCCEEEEEECSC---TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEE
T ss_pred cCCCceEecccCCCCceEEEEecCCCCeEEEEeCCcc---cchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEE
Confidence 3455543333456669999998777888999997543 2356788999999996544 4568888888788899999
Q ss_pred ccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcC---------------------------------------
Q 005278 492 FMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGH--------------------------------------- 532 (704)
Q Consensus 492 ~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h--------------------------------------- 532 (704)
|++|.++. ... .. ...++.++++.+..||...
T Consensus 96 ~i~G~~l~--~~~----~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (264)
T 1nd4_A 96 EVPGQDLL--SSH----LA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLA 166 (264)
T ss_dssp CCSSEETT--TSC----CC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCC
T ss_pred ecCCcccC--cCc----CC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhccCcc
Confidence 99998884 211 11 2356777778888886521
Q ss_pred ----------------CCCcEecCCCCCCeeeCCCCcEEEeeecccee
Q 005278 533 ----------------STPMVHCDLKPNNILLDENMTAHVSDFGISKL 564 (704)
Q Consensus 533 ----------------~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~ 564 (704)
...++|+|++|.||++++++.+.|+|||.+..
T Consensus 167 ~~~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~~ 214 (264)
T 1nd4_A 167 PAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGV 214 (264)
T ss_dssp HHHHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCEE
T ss_pred HHHHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhccc
Confidence 12399999999999998776677999998763
No 409
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.07 E-value=4.4e-11 Score=123.74 Aligned_cols=180 Identities=14% Similarity=0.189 Sum_probs=93.0
Q ss_pred hhhcCCCCCEEEccCCcCc---------cccChhhcCCCCcCeeeccCcc-cCCCCCccccCCCCCCEEEcCCCcCCccC
Q 005278 129 EIGNLSGMIVFDLNGCDLN---------GTIPTAVGRLRRLQGLYLHGNK-LQGSIPYDLCHLEGLSELNLNGNKLCGHV 198 (704)
Q Consensus 129 ~~~~l~~L~~L~L~~n~l~---------~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 198 (704)
++..+++|+.|.+.++... +.+...+..+|+|+.|+|++|. +. ++. +. +++|+.|+|..|.++...
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~--l~~-~~-~~~L~~L~L~~~~l~~~~ 209 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS--IGK-KP-RPNLKSLEIISGGLPDSV 209 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB--CCS-CB-CTTCSEEEEECSBCCHHH
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce--ecc-cc-CCCCcEEEEecCCCChHH
Confidence 3455667777776554321 1233455667777777777763 22 222 33 677888888777776433
Q ss_pred Ccccc--CcCCCCEEEecC--ccCCCC-----CCCcc--cCCccccEEEecCcccCCCCCcccc---cCcCCcEEEeecC
Q 005278 199 PPCLA--SLTSLRRLHLGS--NKLTST-----MPSSF--GSLEYVLYINLSANSLNGSLPSNIQ---NLKVLTNLDLSRN 264 (704)
Q Consensus 199 ~~~~~--~l~~L~~L~l~~--n~l~~~-----~~~~~--~~l~~L~~L~l~~N~l~~~~~~~~~---~l~~L~~L~l~~n 264 (704)
...+. .+|+|+.|+|+. |...+. +...+ ..+++|++|+|.+|.+.+..+..+. .+++|+.|+|+.|
T Consensus 210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n 289 (362)
T 2ra8_A 210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG 289 (362)
T ss_dssp HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS
T ss_pred HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC
Confidence 33333 567777777753 221111 00111 2356666666666665532222221 3556666666666
Q ss_pred ccCCC----CCCCcCCCCCcceeeccCceeeccCCcccccccccceEEecccC
Q 005278 265 QLSGD----IPTTIGGLENLETLSLADNQFQGPVPKSFGSLISLESLDLSRNN 313 (704)
Q Consensus 265 ~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~ 313 (704)
.+++. ++..+..+++|+.|+|++|.+++..-..+...- ...+++++|+
T Consensus 290 ~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-g~~~~~~~~~ 341 (362)
T 2ra8_A 290 VLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL-PMKIDVSDSQ 341 (362)
T ss_dssp CCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC-CSEEECCSBC
T ss_pred CCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc-CCEEEecCCc
Confidence 66542 223334456666666666665543333333210 2345555554
No 410
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.06 E-value=1.5e-08 Score=106.49 Aligned_cols=280 Identities=10% Similarity=0.032 Sum_probs=197.6
Q ss_pred CCCCCCCCEEecCCCcCcccCCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccC
Q 005278 2 GYMLPNLKYLTLFDNKLSGTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSL 81 (704)
Q Consensus 2 ~~~l~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~ 81 (704)
++...+|+.++|..+ ++.+-..+|.+. +|+.+.+..+ ++.+...+|.+. +|+.+.+..+ +..++..+ |
T Consensus 65 F~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~lp~~-~~~i~~~~-------F 132 (379)
T 4h09_A 65 FNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFEFPGA-TTEIGNYI-------F 132 (379)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTT-------T
T ss_pred hhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-CcccccCCCc-cccccccc-------c
Confidence 456789999999865 676777889887 6888888654 666888888875 8999999765 44444443 5
Q ss_pred CCCCCCcEEEccCCCCcccCChhhhhcccccceEEecCCcccc------------cCChhhhcCCCCCEEEccCCcCccc
Q 005278 82 TNCRNLTVLGLASNPLRGILPPLIGNFSASLQEFYAYGCKLRG------------NIPQEIGNLSGMIVFDLNGCDLNGT 149 (704)
Q Consensus 82 ~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~------------~~~~~~~~l~~L~~L~L~~n~l~~~ 149 (704)
.++ +|+.+.+-.+ +.......+... ..++...+..+.... .....+.....+..+.+..+.-. .
T Consensus 133 ~~~-~l~~~~~~~~-v~~i~~~~f~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i 208 (379)
T 4h09_A 133 YNS-SVKRIVIPKS-VTTIKDGIGYKA-ENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKT-V 208 (379)
T ss_dssp TTC-CCCEEEECTT-CCEECSCTTTTC-TTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCE-E
T ss_pred ccc-eeeeeeccce-eeccccchhccc-ccccccccccccceeecccceecccccceeccccccccccccccccceeE-E
Confidence 554 5666665543 333334444433 346666555433221 12223445566677666644333 5
Q ss_pred cChhhcCCCCcCeeeccCcccCCCCCccccCCCCCCEEEcCCCcCCccCCccccCcCCCCEEEecCccCCCCCCCcccCC
Q 005278 150 IPTAVGRLRRLQGLYLHGNKLQGSIPYDLCHLEGLSELNLNGNKLCGHVPPCLASLTSLRRLHLGSNKLTSTMPSSFGSL 229 (704)
Q Consensus 150 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 229 (704)
....+....+|+.+.+..+ ++......+.++.+|+.+.+..+ ++......|.++.+|+.+.+..+ +.......|.++
T Consensus 209 ~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c 285 (379)
T 4h09_A 209 TAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGC 285 (379)
T ss_dssp CTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTC
T ss_pred eecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccc
Confidence 5667788889999988765 44355677888999999999876 55455678888999999999764 555666788999
Q ss_pred ccccEEEecCcccCCCCCcccccCcCCcEEEeecCccCCCCCCCcCCCCCcceeeccCceeeccCCccccccc
Q 005278 230 EYVLYINLSANSLNGSLPSNIQNLKVLTNLDLSRNQLSGDIPTTIGGLENLETLSLADNQFQGPVPKSFGSLI 302 (704)
Q Consensus 230 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 302 (704)
++|+.+.+.++.++.....+|.++.+|+.+.|..+ ++.....+|.++.+|+.+.+..+ ++.....+|.++.
T Consensus 286 ~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 286 SNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp TTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred cccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 99999999999888777888999999999999765 66566678999999999998765 5545556666553
No 411
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.04 E-value=1.1e-10 Score=120.78 Aligned_cols=129 Identities=16% Similarity=0.177 Sum_probs=63.8
Q ss_pred ccceEEecCCcccccCChhhh--cCCCCCEEEccC--CcCcc-----ccChhh--cCCCCcCeeeccCcccCCCCCcccc
Q 005278 111 SLQEFYAYGCKLRGNIPQEIG--NLSGMIVFDLNG--CDLNG-----TIPTAV--GRLRRLQGLYLHGNKLQGSIPYDLC 179 (704)
Q Consensus 111 ~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~--n~l~~-----~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~l~ 179 (704)
+|++|++..|.+.......+. .+++|++|+|+. |...+ .+...+ ..+++|+.|+|++|.+++..+..+.
T Consensus 194 ~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la 273 (362)
T 2ra8_A 194 NLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFL 273 (362)
T ss_dssp TCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHH
T ss_pred CCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHH
Confidence 455555555554433333333 456666666642 11110 001112 2356677777766666532222222
Q ss_pred ---CCCCCCEEEcCCCcCCcc----CCccccCcCCCCEEEecCccCCCCCCCcccC-CccccEEEecCcc
Q 005278 180 ---HLEGLSELNLNGNKLCGH----VPPCLASLTSLRRLHLGSNKLTSTMPSSFGS-LEYVLYINLSANS 241 (704)
Q Consensus 180 ---~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~N~ 241 (704)
.+++|++|+|+.|.+++. ++..+.++++|+.|+|++|.|+......+.. + ...++++.+.
T Consensus 274 ~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 274 ESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred hCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 356677777777776643 2223345567777777777665332222221 1 2446666665
No 412
>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}
Probab=98.86 E-value=6.7e-09 Score=108.29 Aligned_cols=142 Identities=15% Similarity=0.203 Sum_probs=106.6
Q ss_pred ccccccccCceEEEEEEECCCCEEEEEEee--ccc-hhhhHHHHHHHHHHHhcC--CCCCceEEeeeeeC---CeEEEEE
Q 005278 419 ECNLLGTGSFGSVYKGTLFDGTNVAIKVFN--LQL-ERASRSFDSECEILRSIR--HRNLIKIISNCCNI---DFKALVL 490 (704)
Q Consensus 419 ~~~~ig~G~~g~V~~~~~~~~~~vavK~~~--~~~-~~~~~~~~~e~~~l~~l~--h~niv~l~~~~~~~---~~~~lv~ 490 (704)
..+.++.|.++.||+.... +..+++|+.. ... ......+.+|.++++.+. +..+.++++++.+. +..++||
T Consensus 42 ~~~~l~~G~sn~~y~v~~~-~~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vm 120 (359)
T 3dxp_A 42 SVEQFKGGQSNPTFKLVTP-GQTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIM 120 (359)
T ss_dssp EEEECCC-CCSCEEEEECS-SCEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEE
T ss_pred eEEEcCCcccceEEEEEEC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEEE
Confidence 4578999999999999865 4678888875 322 123456889999999997 45678899988776 4578999
Q ss_pred eccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcC--------------------------------------
Q 005278 491 EFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGH-------------------------------------- 532 (704)
Q Consensus 491 e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h-------------------------------------- 532 (704)
||++|..+.+.. ...++...+..++.+++..|..||...
T Consensus 121 e~v~G~~l~~~~---~~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (359)
T 3dxp_A 121 EFVSGRVLWDQS---LPGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESIPAM 197 (359)
T ss_dssp ECCCCBCCCCTT---CTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCCHHH
T ss_pred EecCCeecCCCc---cccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcCChHH
Confidence 999997774421 122567788889999999999999621
Q ss_pred -----------------CCCcEecCCCCCCeeeCCCCc--EEEeeecccee
Q 005278 533 -----------------STPMVHCDLKPNNILLDENMT--AHVSDFGISKL 564 (704)
Q Consensus 533 -----------------~~~ivH~dlk~~Nil~~~~~~--~kl~Dfgla~~ 564 (704)
...++|||+++.||+++.++. +.|.||+.+..
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~ 248 (359)
T 3dxp_A 198 DSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL 248 (359)
T ss_dssp HHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred HHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence 256999999999999997753 68999998875
No 413
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.84 E-value=5e-10 Score=104.54 Aligned_cols=52 Identities=10% Similarity=0.034 Sum_probs=27.5
Q ss_pred chhhcCCCCCCEEecccc-cCCCcccchhhcccccCCCCCCCcEEEccCCCCcccC
Q 005278 47 PNTFGNLGSLQVLSLAYN-YLMTESSAAKWNFLSSLTNCRNLTVLGLASNPLRGIL 101 (704)
Q Consensus 47 ~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 101 (704)
...+...++|++|+|++| .|....... +...+...++|++|+|++|+|....
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~---l~~~L~~~~~L~~L~Ls~n~i~~~g 81 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKA---CAEALKTNTYVKKFSIVGTRSNDPV 81 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHH---HHHHHTTCCSCCEEECTTSCCCHHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHH---HHHHHHhCCCcCEEECcCCCCChHH
Confidence 344555555666666665 555443322 3344555556666666666655433
No 414
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.83 E-value=9.3e-10 Score=102.69 Aligned_cols=124 Identities=15% Similarity=0.081 Sum_probs=84.4
Q ss_pred cCCccccCCCCCCEEeccCc-ccccc----CchhhcCCCCCCEEecccccCCCcccchhhcccccCCCCCCCcEEEccCC
Q 005278 21 TIPNSITNASKLIMLDLSSN-SFSGL----IPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTNCRNLTVLGLASN 95 (704)
Q Consensus 21 ~~~~~~~~l~~L~~L~L~~n-~i~~~----~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~l~~L~~L~L~~n 95 (704)
.+...+...++|++|+|++| .+.+. +...+...++|++|+|++|.|...+... +...+...++|++|+|++|
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~---l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFA---LAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHH---HHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHH---HHHHHHhCCCcCEEECcCC
Confidence 34455666778888888887 77743 3344566677888888888877655433 4455666677888888888
Q ss_pred CCcccCChhhhhcc---cccceEEe--cCCccccc----CChhhhcCCCCCEEEccCCcCc
Q 005278 96 PLRGILPPLIGNFS---ASLQEFYA--YGCKLRGN----IPQEIGNLSGMIVFDLNGCDLN 147 (704)
Q Consensus 96 ~i~~~~~~~~~~~~---~~L~~L~l--~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~ 147 (704)
.|+......++... ++|++|+| ++|.++.. +...+...++|++|+|++|.+.
T Consensus 104 ~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 104 FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 88766544444322 25788888 77777653 4455666788999999998876
No 415
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Probab=98.77 E-value=1.9e-09 Score=109.56 Aligned_cols=187 Identities=16% Similarity=0.153 Sum_probs=120.8
Q ss_pred cccccccCceEEEEEEECCCCEEEEEEeeccchhhhHHHHHHHHHHHhcC-CCC--CceEEeeeeeCC---eEEEEEecc
Q 005278 420 CNLLGTGSFGSVYKGTLFDGTNVAIKVFNLQLERASRSFDSECEILRSIR-HRN--LIKIISNCCNID---FKALVLEFM 493 (704)
Q Consensus 420 ~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~n--iv~l~~~~~~~~---~~~lv~e~~ 493 (704)
.+.++.|....||+.. ..+++|+.... .....+.+|.++++.+. +.. +.+++....... ..++|||++
T Consensus 25 i~~~~~G~~n~v~~v~----~~~vlR~~~~~--~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~i 98 (304)
T 3sg8_A 25 IEISGEGNDCIAYEIN----RDFIFKFPKHS--RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKI 98 (304)
T ss_dssp CCEEEECSSEEEEEST----TSEEEEEESSH--HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEECC
T ss_pred eEecCCCCcceEEEEC----CEEEEEecCCc--chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEccc
Confidence 4568999999999863 56889986432 34567899999999984 332 445555543333 347899999
Q ss_pred CCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhc------------------------------------------
Q 005278 494 PNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHG------------------------------------------ 531 (704)
Q Consensus 494 ~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~------------------------------------------ 531 (704)
+|.++.+.... .++...+..++.+++..+..||..
T Consensus 99 ~G~~l~~~~~~---~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 175 (304)
T 3sg8_A 99 KGVPLTPLLLN---NLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQMKKVDD 175 (304)
T ss_dssp CCEECCHHHHH---TSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred CCeECCccccc---cCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcccHHHHHH
Confidence 99888653322 256667777888888888888751
Q ss_pred -------------CCCCcEecCCCCCCeeeCC--CCcEEEeeeccceecCCCCCcceecc------------cccccccc
Q 005278 532 -------------HSTPMVHCDLKPNNILLDE--NMTAHVSDFGISKLLGEGDDSVIQTM------------TIATIGYM 584 (704)
Q Consensus 532 -------------h~~~ivH~dlk~~Nil~~~--~~~~kl~Dfgla~~~~~~~~~~~~~~------------~~gt~~y~ 584 (704)
....++|+|++|.||++++ ...+.++||+.+..-....+-..... .....++.
T Consensus 176 ~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~l~~Y~~~ 255 (304)
T 3sg8_A 176 FYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFISLMEDDEEYGMEFVSKILNHYKHK 255 (304)
T ss_dssp HHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEECTTHHHHTTCCTTTSCCHHHHHHHHHHHTCS
T ss_pred HHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCChHHHHHHHHhhccccCHHHHHHHHHHcCCC
Confidence 1245799999999999998 45678999999876432110000000 00000111
Q ss_pred C-CcccCCCCCCcccceeeHHHHHHHHhhCCCCC
Q 005278 585 A-PEYGSEGIISPKSDVYSYGILLMETFTRKKPT 617 (704)
Q Consensus 585 a-PE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~ 617 (704)
. |+.... .....+.|++|.++|++.+|..+|
T Consensus 256 ~~~~~~~r--~~~~~~~~~l~~~~~~~~~g~~~~ 287 (304)
T 3sg8_A 256 DIPTVLEK--YRMKEKYWSFEKIIYGKEYGYMDW 287 (304)
T ss_dssp CHHHHHHH--HHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CcHHHHHH--HHHHHHHHHHHHHHHHHHcCCHHH
Confidence 1 111110 111258999999999999998775
No 416
>3r70_A Aminoglycoside phosphotransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE ADP PE3; 1.80A {Escherichia coli} PDB: 3r6z_A* 3uzr_A* 4dca_A* 3hav_A* 3ham_A*
Probab=98.48 E-value=8.5e-07 Score=90.53 Aligned_cols=136 Identities=20% Similarity=0.244 Sum_probs=99.7
Q ss_pred CCCccccccccCceEEEEEEECCCCEEEEEEeeccchhhhHHHHHHHHHHHhcCC----CCCceEEeeeeeCCeEEEEEe
Q 005278 416 GFNECNLLGTGSFGSVYKGTLFDGTNVAIKVFNLQLERASRSFDSECEILRSIRH----RNLIKIISNCCNIDFKALVLE 491 (704)
Q Consensus 416 ~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h----~niv~l~~~~~~~~~~~lv~e 491 (704)
.....+.++.|....||+. |+.+++|+.... .....+..|.++++.+.+ ..+.+++++ +..++|||
T Consensus 38 ~i~~v~~l~~G~~n~vy~v----g~~~vlR~~~~~--~~~~~~~~E~~~L~~L~~~~~~~~vP~v~~~----~~~~lvme 107 (320)
T 3r70_A 38 KINELRYLSSGDDSDTFLC----NEQYVVKVPKRD--SVRISQKRELELYRFLENCKLSYQIPAVVYQ----SDRFNIMK 107 (320)
T ss_dssp CCSCEEEEEECSSEEEEEE----TTTEEEEEESSH--HHHHHHHHHHHHHHHHTTSCCSSBCCCEEEE----CSSCEEEE
T ss_pred ceEEEEeCCCCCCceEEEE----CCEEEEEeCCcH--HHHHHHHHHHHHHHHHHhcCCCCCcceEEec----CCcEEEEe
Confidence 5566778999999999998 677899986432 224568999999999976 234455554 45689999
Q ss_pred ccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcC---------------------------------------
Q 005278 492 FMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGH--------------------------------------- 532 (704)
Q Consensus 492 ~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h--------------------------------------- 532 (704)
|++|.++.+.... .++......++.+++..+..||...
T Consensus 108 ~i~G~~l~~~~~~---~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (320)
T 3r70_A 108 YIKGERITYEQYH---KLSEKEKDALAYDEATFLKELHSIEIDCSVSLFSDALVNKKDKFLQDKKLLISILEKEQLLTDE 184 (320)
T ss_dssp CCCCBCCCHHHHT---TSCHHHHHHHHHHHHHHHHHHHHSCCCTTSHHHHTTBCCHHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred ecCCccccccccc---cCCHHHHHHHHHHHHHHHHHHhCCCcccCCCccccccccchHHHHHHHHHHHHHHhhccccccc
Confidence 9999888643321 2455566677777777777777422
Q ss_pred ---------------------CCCcEecCCCCCCeeeCCCCcEEEeeecccee
Q 005278 533 ---------------------STPMVHCDLKPNNILLDENMTAHVSDFGISKL 564 (704)
Q Consensus 533 ---------------------~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~ 564 (704)
...++|+|++|.||+++.+..+.|+||+.+..
T Consensus 185 ~~~~~~~~~~~~l~~~~~~~~~~~~~H~D~~~~N~l~~~~~~~~~iD~~~~~~ 237 (320)
T 3r70_A 185 MLEHIETIYENILSNAVLFKYTPCLVHNDFSANNMIFRNNRLFGVIDFGDFNV 237 (320)
T ss_dssp HHHHHHHHHHHHHTCGGGTCCCCEEECSCCSGGGEEEETTEEEEECCCTTCEE
T ss_pred chHHHHHHHHHHHhccccccCCceeeECCCCCCcEEEECCceEEEECCccccc
Confidence 12359999999999999866679999998864
No 417
>3d1u_A Putative fructosamine-3-kinase; YP_290396.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Thermobifida fusca} PDB: 3f7w_A
Probab=98.38 E-value=2.3e-06 Score=85.46 Aligned_cols=77 Identities=16% Similarity=0.130 Sum_probs=61.4
Q ss_pred CccccccccCceEEEEEEECCCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCC---CCceEEeeeeeCCeEEEEEeccC
Q 005278 418 NECNLLGTGSFGSVYKGTLFDGTNVAIKVFNLQLERASRSFDSECEILRSIRHR---NLIKIISNCCNIDFKALVLEFMP 494 (704)
Q Consensus 418 ~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~---niv~l~~~~~~~~~~~lv~e~~~ 494 (704)
...+.|+.|.++.||+++..+|+.++||+...........+..|++.++.+++. .+.+++++. ..++||||++
T Consensus 18 ~~~~~l~gG~~n~vy~v~~~dG~~~vvK~~~~~~~~~~~~~~~E~~~L~~L~~~~~v~vP~v~~~~----~~~lvme~l~ 93 (288)
T 3d1u_A 18 AAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAMEWVD 93 (288)
T ss_dssp EEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEEECCC
T ss_pred cceeeeCCcchhheEEEEeCCCCeEEEEecCCCCcchhHHHHHHHHHHHHHHhcCCCCcCeEEEec----CcEEEEEecc
Confidence 345789999999999999888999999996533222346789999999999865 577888763 3589999999
Q ss_pred CCCH
Q 005278 495 NGSL 498 (704)
Q Consensus 495 ~gsL 498 (704)
++++
T Consensus 94 g~~~ 97 (288)
T 3d1u_A 94 ERPP 97 (288)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9874
No 418
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.36 E-value=8.1e-08 Score=86.97 Aligned_cols=92 Identities=10% Similarity=0.122 Sum_probs=65.4
Q ss_pred CCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEeccccc-CCCcccchhhcccccCCCC----CCCcEEEccCCC
Q 005278 22 IPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNY-LMTESSAAKWNFLSSLTNC----RNLTVLGLASNP 96 (704)
Q Consensus 22 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~~~~~~~~l----~~L~~L~L~~n~ 96 (704)
+|.....-..|++|||++|.|++..-..+.++++|++|+|++|. |++..... +..+ ++|++|+|++|.
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~-------L~~~~~~~~~L~~L~Ls~C~ 125 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLER-------LSQLENLQKSMLEMEIISCG 125 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHH-------HHTCHHHHHHCCEEEEESCT
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHH-------HHhcccccCCCCEEEcCCCC
Confidence 34433344568888888888887777778888888888888885 66544333 4443 468888888874
Q ss_pred -CcccCChhhhhcccccceEEecCCc
Q 005278 97 -LRGILPPLIGNFSASLQEFYAYGCK 121 (704)
Q Consensus 97 -i~~~~~~~~~~~~~~L~~L~l~~n~ 121 (704)
|++..-..+..+ ++|++|++++|.
T Consensus 126 ~ITD~Gl~~L~~~-~~L~~L~L~~c~ 150 (176)
T 3e4g_A 126 NVTDKGIIALHHF-RNLKYLFLSDLP 150 (176)
T ss_dssp TCCHHHHHHGGGC-TTCCEEEEESCT
T ss_pred cCCHHHHHHHhcC-CCCCEEECCCCC
Confidence 777666677765 578888888875
No 419
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.36 E-value=8e-08 Score=93.99 Aligned_cols=65 Identities=29% Similarity=0.495 Sum_probs=33.2
Q ss_pred hcCCCCCEEEccCCcCcc--ccChhhcCCCCcCeeeccCcccCCCCCccccCCC--CCCEEEcCCCcCCcc
Q 005278 131 GNLSGMIVFDLNGCDLNG--TIPTAVGRLRRLQGLYLHGNKLQGSIPYDLCHLE--GLSELNLNGNKLCGH 197 (704)
Q Consensus 131 ~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~L~~n~l~~~ 197 (704)
.++++|+.|+|++|.|++ .++..+..+++|+.|+|++|+|++. ..+..++ +|++|+|++|.+.+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~ 235 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDT 235 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccc
Confidence 445556666666666554 2234455555566666666655532 1222222 555555555555543
No 420
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.33 E-value=4.8e-08 Score=95.58 Aligned_cols=39 Identities=28% Similarity=0.448 Sum_probs=17.5
Q ss_pred CCCCCEEEcCCCcCCc--cCCccccCcCCCCEEEecCccCC
Q 005278 181 LEGLSELNLNGNKLCG--HVPPCLASLTSLRRLHLGSNKLT 219 (704)
Q Consensus 181 l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~ 219 (704)
+++|+.|+|++|+|++ .++..+..+++|+.|+|++|+|+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~ 209 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK 209 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC
Confidence 3445555555555443 22233334444444444444444
No 421
>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*
Probab=98.31 E-value=5.4e-06 Score=83.84 Aligned_cols=136 Identities=13% Similarity=0.100 Sum_probs=92.9
Q ss_pred cccccccCceEEEEEEECCCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCC---CCceEEeeee-eCCeEEEEEeccCC
Q 005278 420 CNLLGTGSFGSVYKGTLFDGTNVAIKVFNLQLERASRSFDSECEILRSIRHR---NLIKIISNCC-NIDFKALVLEFMPN 495 (704)
Q Consensus 420 ~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~---niv~l~~~~~-~~~~~~lv~e~~~~ 495 (704)
.+.++.|....||+. |..+++|+... ......+..|.++++.+.+. .+.+.+.+.. ..+..++||||++|
T Consensus 24 v~~l~~G~~n~v~~v----g~~~VlR~~~~--~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i~G 97 (306)
T 3tdw_A 24 VESLGEGFRNYAILV----NGDWVFRFPKS--QQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKVQG 97 (306)
T ss_dssp EEEEEECSSEEEEEE----TTTEEEEEESS--HHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECCCS
T ss_pred eeecCCCcceeEEEE----CCEEEEEecCC--chHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEeccCC
Confidence 456888888899987 67788998532 23456789999999999753 3556666664 34567899999999
Q ss_pred CCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhc--------------------------------------------
Q 005278 496 GSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHG-------------------------------------------- 531 (704)
Q Consensus 496 gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~-------------------------------------------- 531 (704)
.++.+.... .++......++.+++..+..||..
T Consensus 98 ~~l~~~~~~---~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 174 (306)
T 3tdw_A 98 QILGEDGMA---VLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLDESLRDYLTL 174 (306)
T ss_dssp EECHHHHHT---TSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGSCHHHHHHHHH
T ss_pred eECchhhhh---hCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhcccccchhhHHHHHH
Confidence 887653211 123334444444444444444431
Q ss_pred -------------CCCCcEecCCCCCCeeeCC---CCc-EEEeeecccee
Q 005278 532 -------------HSTPMVHCDLKPNNILLDE---NMT-AHVSDFGISKL 564 (704)
Q Consensus 532 -------------h~~~ivH~dlk~~Nil~~~---~~~-~kl~Dfgla~~ 564 (704)
....++|+|+.+.||+++. ++. +.|+||+.+..
T Consensus 175 ~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~ 224 (306)
T 3tdw_A 175 RFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAI 224 (306)
T ss_dssp HHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEE
T ss_pred HHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCC
Confidence 3345799999999999997 455 48999998764
No 422
>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*
Probab=98.28 E-value=6.5e-06 Score=81.73 Aligned_cols=135 Identities=18% Similarity=0.112 Sum_probs=98.0
Q ss_pred cccccCce-EEEEEEEC-CCCEEEEEEeeccchhhhHHHHHHHHHHHhcC-CCCCceEEeeeeeCCeEEEEEeccCCCCH
Q 005278 422 LLGTGSFG-SVYKGTLF-DGTNVAIKVFNLQLERASRSFDSECEILRSIR-HRNLIKIISNCCNIDFKALVLEFMPNGSL 498 (704)
Q Consensus 422 ~ig~G~~g-~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e~~~~gsL 498 (704)
.+..|..+ .||+.... ++..+++|+-... ....+..|...++.+. +-.+.++++++.+.+..++|||++++.++
T Consensus 31 ~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~---~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G~~~ 107 (272)
T 4gkh_A 31 RDNVGQSGATIYRLYGKPNAPELFLKHGKGS---VANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPGKTA 107 (272)
T ss_dssp EEECSSSSCEEEEEECCTTCCCEEEEEEETH---HHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCSEEH
T ss_pred EccCCCcCCeEEEEEecCCCeEEEEEECCCC---CHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCCccc
Confidence 45556655 68987754 5678999986432 3456888999999884 33467889999999999999999999888
Q ss_pred HHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhc-----------------------------------------------
Q 005278 499 EKWLYSHNYFLGILERLNIMIDVGLALEYLHHG----------------------------------------------- 531 (704)
Q Consensus 499 ~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~----------------------------------------------- 531 (704)
.+...... .....++.+++..+..||..
T Consensus 108 ~~~~~~~~-----~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (272)
T 4gkh_A 108 FQVLEEYP-----DSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWPVEQVWKE 182 (272)
T ss_dssp HHHHHHCG-----GGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTCCHHHHHHH
T ss_pred cccccCCH-----HHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccchHHHHHHHH
Confidence 77654321 12334566677777777631
Q ss_pred --------CCCCcEecCCCCCCeeeCCCCcEEEeeecccee
Q 005278 532 --------HSTPMVHCDLKPNNILLDENMTAHVSDFGISKL 564 (704)
Q Consensus 532 --------h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~ 564 (704)
+...++|+|+.+.||+++.++.+-|+||+.+..
T Consensus 183 l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~~ 223 (272)
T 4gkh_A 183 MHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGI 223 (272)
T ss_dssp HHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCEE
T ss_pred HHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECccccc
Confidence 112379999999999999877777999987763
No 423
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.27 E-value=5.3e-07 Score=81.58 Aligned_cols=86 Identities=8% Similarity=0.076 Sum_probs=61.6
Q ss_pred CCCCCEEecccccCCCcccchhhcccccCCCCCCCcEEEccCCC-CcccCChhhhhc---ccccceEEecCCc-ccccCC
Q 005278 53 LGSLQVLSLAYNYLMTESSAAKWNFLSSLTNCRNLTVLGLASNP-LRGILPPLIGNF---SASLQEFYAYGCK-LRGNIP 127 (704)
Q Consensus 53 l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~~---~~~L~~L~l~~n~-l~~~~~ 127 (704)
-.+|++|||++|.|+..+... +..+++|++|+|++|. |++..-..++.+ .++|++|+|++|. ++..--
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~-------L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDH-------MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGG-------GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred CceEeEEeCcCCCccHHHHHH-------hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 346899999999988766544 7889999999999985 776665666653 2457777777764 665444
Q ss_pred hhhhcCCCCCEEEccCCc
Q 005278 128 QEIGNLSGMIVFDLNGCD 145 (704)
Q Consensus 128 ~~~~~l~~L~~L~L~~n~ 145 (704)
..+..+++|++|+|++|.
T Consensus 133 ~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 133 IALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHGGGCTTCCEEEEESCT
T ss_pred HHHhcCCCCCEEECCCCC
Confidence 556667777777777764
No 424
>3ovc_A Hygromycin-B 4-O-kinase; aminoglycoside phosphotransferase, structural genomics, PSI- protein structure initiative; HET: HY0 PE4; 1.95A {Escherichia coli} PDB: 3tyk_A*
Probab=98.18 E-value=7.8e-06 Score=84.67 Aligned_cols=143 Identities=11% Similarity=0.119 Sum_probs=91.1
Q ss_pred CCccccccccCceEEEEEEECCCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCC--CceEEeeeeeC-CeEEEEEecc
Q 005278 417 FNECNLLGTGSFGSVYKGTLFDGTNVAIKVFNLQLERASRSFDSECEILRSIRHRN--LIKIISNCCNI-DFKALVLEFM 493 (704)
Q Consensus 417 ~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n--iv~l~~~~~~~-~~~~lv~e~~ 493 (704)
....+.++.|....+|+... +++.+++|..... ..+..|..+++.+.... +.++++++... +..++||||+
T Consensus 43 ~~~i~~l~gG~~n~~y~v~~-~g~~~vlK~~~~~-----~~~~~E~~~l~~L~~~gvpvP~vl~~~~~~~g~~~lv~e~l 116 (362)
T 3ovc_A 43 VSDLMQLSEGEESRAFSFDV-GGRGYVLRVNSCA-----DGFYKDRYVYRHFASAALPIPEVLDIGEFSESLTYCISRRA 116 (362)
T ss_dssp CEEEEEEEECSSEEEEEEEE-TTEEEEEEEESCC-----HHHHHHHHHHHHHCCSSSCCCCEEEEEESSSSCEEEEEECC
T ss_pred CceEEECCCCCcceEEEEEE-CCcEEEEEeCCch-----hhHHHHHHHHHHHHhcCCCCceEEEeccCCCCCeEEEEEec
Confidence 34456789999999999875 5788999986432 35889999999996543 55677776654 5689999999
Q ss_pred CCCCHHHH------------------HhhCC----Cc------------cCHHHH---------------------HHHH
Q 005278 494 PNGSLEKW------------------LYSHN----YF------------LGILER---------------------LNIM 518 (704)
Q Consensus 494 ~~gsL~~~------------------l~~~~----~~------------~~~~~~---------------------~~i~ 518 (704)
++.++.+. ++... .. -.|... ....
T Consensus 117 ~G~~l~~l~~~~~~~~~~~lg~~La~LH~~~~~~~~gl~~~~~~~~~~~~~w~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 196 (362)
T 3ovc_A 117 QGVTLQDLPETELPAVLQPVAEAMDAIAAADLSQTSGFGPFGPQGIGQYTTWRDFICAIADPHVYHWQTVMDDTVSASVA 196 (362)
T ss_dssp CSEETTTSCGGGSGGGHHHHHHHHHHHHHCCCTTCBCEEEECTTSBEEESSHHHHHHGGGCTTTCCHHHHCCTTTHHHHH
T ss_pred CCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCccccCccCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHhhcccccch
Confidence 97655321 11100 00 001111 0111
Q ss_pred HHHHHHHHHHHhc-CCCCcEecCCCCCCeeeCCCCcEEEeeeccceec
Q 005278 519 IDVGLALEYLHHG-HSTPMVHCDLKPNNILLDENMTAHVSDFGISKLL 565 (704)
Q Consensus 519 ~~i~~~l~~Lh~~-h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~ 565 (704)
..+....+++... ....++|+|+.+.||+++.++.+.|+||+.+..-
T Consensus 197 ~~~~~l~~~l~~lp~~~~l~HgDl~~~Nil~~~~~~~~viD~~~~~~g 244 (362)
T 3ovc_A 197 QALDELMLWAEDCPEVRHLVHADFGSNNVLTDNGRITAVIDWSEAMFG 244 (362)
T ss_dssp HHHHHHHHHGGGCCCCCEEECSSCSSTTEEEETTEEEEECCCTTCEEE
T ss_pred HHHHHHHHHHhhCCCCcEEEeCCCCCCeEEEeCCCEEEEECCcccccC
Confidence 1122222233211 1245899999999999987777889999988753
No 425
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.14 E-value=8.9e-07 Score=81.73 Aligned_cols=47 Identities=11% Similarity=0.196 Sum_probs=20.1
Q ss_pred cCCCCCCEEecccc-cCCCcccchhhcccccCCCCCCCcEEEccCCCCccc
Q 005278 51 GNLGSLQVLSLAYN-YLMTESSAAKWNFLSSLTNCRNLTVLGLASNPLRGI 100 (704)
Q Consensus 51 ~~l~~L~~L~L~~n-~i~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~ 100 (704)
.+-+.|++|+|++| .|...+..+ +.+.+...+.|+.|+|++|+|.+.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~---la~aL~~N~~L~~L~L~~n~igd~ 85 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRS---LIEAACNSKHIEKFSLANTAISDS 85 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHH---HHHHHTTCSCCCEEECTTSCCBHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHH---HHHHHhhCCCcCEEEccCCCCChH
Confidence 33344444444443 443332222 333344444455555555554433
No 426
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.14 E-value=9.9e-07 Score=81.43 Aligned_cols=123 Identities=16% Similarity=0.158 Sum_probs=84.8
Q ss_pred CCccccCCCCCCEEeccCc-ccccc----CchhhcCCCCCCEEecccccCCCcccchhhcccccCCCCCCCcEEEccCCC
Q 005278 22 IPNSITNASKLIMLDLSSN-SFSGL----IPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTNCRNLTVLGLASNP 96 (704)
Q Consensus 22 ~~~~~~~l~~L~~L~L~~n-~i~~~----~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~ 96 (704)
+...+.+-+.|++|+|++| .|.+. +..++..-+.|+.|+|++|+|......+ +.+.+...+.|++|+|++|.
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~a---lA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARG---LIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTT---HHHHHHHCSSCCEEECCSSB
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHH---HHHHHhcCCccCeEecCCCc
Confidence 3444556677888888875 77643 3445666677888888888887766554 56667777888888888888
Q ss_pred CcccCChhhhhcc---cccceEEecCC---cccc----cCChhhhcCCCCCEEEccCCcCc
Q 005278 97 LRGILPPLIGNFS---ASLQEFYAYGC---KLRG----NIPQEIGNLSGMIVFDLNGCDLN 147 (704)
Q Consensus 97 i~~~~~~~~~~~~---~~L~~L~l~~n---~l~~----~~~~~~~~l~~L~~L~L~~n~l~ 147 (704)
|+..+...++... .+|++|+|.+| .+.. .+...+..-+.|+.|+++.|.+.
T Consensus 110 Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 110 LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 8876665555432 25888888765 3332 34556777788999999877654
No 427
>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*
Probab=98.07 E-value=4.7e-06 Score=86.50 Aligned_cols=80 Identities=9% Similarity=-0.020 Sum_probs=56.5
Q ss_pred cccc-cccCceEEEEEEEC-------CCCEEEEEEeeccc---hhhhHHHHHHHHHHHhcCC---CCCceEEeeeeeC--
Q 005278 420 CNLL-GTGSFGSVYKGTLF-------DGTNVAIKVFNLQL---ERASRSFDSECEILRSIRH---RNLIKIISNCCNI-- 483 (704)
Q Consensus 420 ~~~i-g~G~~g~V~~~~~~-------~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h---~niv~l~~~~~~~-- 483 (704)
.+.| +.|....+|+.... +++.+++|+..... ......+..|+.+++.+.. -.+.+++.++.+.
T Consensus 25 ~~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~ 104 (357)
T 3ats_A 25 ESGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDV 104 (357)
T ss_dssp EEEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTT
T ss_pred EEECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCc
Confidence 3567 88889999998754 26778899865432 0013567889999998842 3577888887655
Q ss_pred -CeEEEEEeccCCCCHH
Q 005278 484 -DFKALVLEFMPNGSLE 499 (704)
Q Consensus 484 -~~~~lv~e~~~~gsL~ 499 (704)
+..++||||++|.++.
T Consensus 105 ~g~~~~v~e~l~G~~l~ 121 (357)
T 3ats_A 105 LGTPFFLMDYVEGVVPP 121 (357)
T ss_dssp TSSCEEEEECCCCBCCC
T ss_pred cCCceEEEEecCCCChh
Confidence 3568999999987654
No 428
>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}
Probab=97.87 E-value=5.7e-05 Score=77.69 Aligned_cols=138 Identities=17% Similarity=0.140 Sum_probs=79.9
Q ss_pred ccccccCceEEEEEEECCCCEEEEEEeeccchhhhHHHHHHHHHHHhcCC--CCCceEEe------eeeeCCeEEEEEec
Q 005278 421 NLLGTGSFGSVYKGTLFDGTNVAIKVFNLQLERASRSFDSECEILRSIRH--RNLIKIIS------NCCNIDFKALVLEF 492 (704)
Q Consensus 421 ~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h--~niv~l~~------~~~~~~~~~lv~e~ 492 (704)
+.|+.|..+.||+....+| .+++|+.... ...+..|..+++.+.. -.+.+++. +....+..+++|||
T Consensus 38 ~~l~gG~~n~~~~v~~~~~-~~vlk~~~~~----~~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l~~~ 112 (346)
T 2q83_A 38 DVIQGNQMALVWKVHTDSG-AVCLKRIHRP----EKKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVVYDW 112 (346)
T ss_dssp EECC----CEEEEEEETTE-EEEEEEECSC----HHHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEEEEC
T ss_pred eeccccccCcEEEEEeCCC-CEEEEecCCC----HHHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEEEe
Confidence 4566677889999987655 4889988642 2334455666665531 12333332 12345677899999
Q ss_pred cCCCCHH--------------HHHhh--CCC-----------ccCHHHHH------------------------------
Q 005278 493 MPNGSLE--------------KWLYS--HNY-----------FLGILERL------------------------------ 515 (704)
Q Consensus 493 ~~~gsL~--------------~~l~~--~~~-----------~~~~~~~~------------------------------ 515 (704)
++|.++. ..++. ... ...|...+
T Consensus 113 i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 192 (346)
T 2q83_A 113 IEGRPFELTVKQDLEFIMKGLADFHTASVGYQPPNGVPIFTKLGRWPNHYTKRCKQMETWKLMAEAEKEDPFSQLYLQEI 192 (346)
T ss_dssp CCCBCCCTTSHHHHHHHHHHHHHHHHHHTTCCCCTTCCCCBCTTCHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred ecCccCCCCCHHHHHHHHHHHHHHHHhCCCCCCCccchhcccccchHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 9986542 11121 000 01222110
Q ss_pred -HHHHHHHHHHHHHHh----------cCCCCcEecCCCCCCeeeCCCCcEEEeeeccce
Q 005278 516 -NIMIDVGLALEYLHH----------GHSTPMVHCDLKPNNILLDENMTAHVSDFGISK 563 (704)
Q Consensus 516 -~i~~~i~~~l~~Lh~----------~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~ 563 (704)
.+...+..++++|+. .....++|+|+.+.||+++.++.+.|+||+.+.
T Consensus 193 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~ 251 (346)
T 2q83_A 193 DGFIEDGLRIKDRLLQSTYVPWTEQLKKSPNLCHQDYGTGNTLLGENEQIWVIDLDTVS 251 (346)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHSCCEECSSCSTTSEEECGGGCEEECCCTTCE
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHhccccCceecCCCCcccEEEeCCCcEEEEehhhcc
Confidence 111223345666653 135789999999999999888899999998775
No 429
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*
Probab=97.81 E-value=6.7e-05 Score=78.92 Aligned_cols=75 Identities=13% Similarity=0.115 Sum_probs=50.0
Q ss_pred cccccccCceEEEEEEEC-CCCEEEEEEeeccch-------hhhHHHHHHHHHHHhcCC--C-CCceEEeeeeeCCeEEE
Q 005278 420 CNLLGTGSFGSVYKGTLF-DGTNVAIKVFNLQLE-------RASRSFDSECEILRSIRH--R-NLIKIISNCCNIDFKAL 488 (704)
Q Consensus 420 ~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~-------~~~~~~~~e~~~l~~l~h--~-niv~l~~~~~~~~~~~l 488 (704)
.+.+|.|.++.||++... +++.++||....... .....+..|.++++.+.. + .+.+++.+ +.+..++
T Consensus 35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~~l 112 (397)
T 2olc_A 35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVT 112 (397)
T ss_dssp EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEE
T ss_pred EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCccEE
Confidence 468999999999999754 578899998643211 123456789999988742 3 34456544 3445689
Q ss_pred EEeccCCC
Q 005278 489 VLEFMPNG 496 (704)
Q Consensus 489 v~e~~~~g 496 (704)
||||+++.
T Consensus 113 vmE~l~g~ 120 (397)
T 2olc_A 113 VMEDLSHL 120 (397)
T ss_dssp EECCCTTS
T ss_pred EEEeCCCc
Confidence 99999764
No 430
>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}
Probab=97.62 E-value=0.00038 Score=69.98 Aligned_cols=137 Identities=13% Similarity=0.068 Sum_probs=92.0
Q ss_pred ccccccccCceEEEEEEECCCCEEEEEEeeccchhhhHHHHHHHHHHHhcC---CCCCceEEeeeeeCCeEEEEEeccCC
Q 005278 419 ECNLLGTGSFGSVYKGTLFDGTNVAIKVFNLQLERASRSFDSECEILRSIR---HRNLIKIISNCCNIDFKALVLEFMPN 495 (704)
Q Consensus 419 ~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~---h~niv~l~~~~~~~~~~~lv~e~~~~ 495 (704)
..+.|+.|....+|+... ++..++||+.... ....+..|.+.++.+. ...+.+++++....+..++||||+++
T Consensus 40 ~~~~l~gG~~n~~y~v~~-~~~~~vlK~~~~~---~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l~G 115 (312)
T 3jr1_A 40 HKEKLYSGEMNEIWLIND-EVQTVFVKINERS---YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEALNK 115 (312)
T ss_dssp EEEEECCSSSSEEEEEES-SSCEEEEEEEEGG---GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECCCC
T ss_pred eeEEeCCccceeeeEEEE-CCCeEEEEeCCcc---cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEeccC
Confidence 456799999999999875 4678889986532 3567889999999884 36688899988888889999999998
Q ss_pred CCHH--------H---HHhhCCC---------------------ccCHHHHHH---HHH----------------HHHHH
Q 005278 496 GSLE--------K---WLYSHNY---------------------FLGILERLN---IMI----------------DVGLA 524 (704)
Q Consensus 496 gsL~--------~---~l~~~~~---------------------~~~~~~~~~---i~~----------------~i~~~ 524 (704)
..+. + .++.... .-+|...+. +.. .+...
T Consensus 116 ~~~~~~~~~~lG~~LA~LH~~~~~~~fG~~~~~~~G~~~q~n~w~~~W~~f~~~~Rl~~~l~~a~~~g~~~~~~~~l~~~ 195 (312)
T 3jr1_A 116 SKNKQSSFTIFAEKIAQLHQIQGPDKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLIFGNIDLIVQI 195 (312)
T ss_dssp CCCCTTHHHHHHHHHHHHHHCCCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHTHHHHHHHHHHHTCCCSCHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCcCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 7642 1 1222110 113443221 111 11111
Q ss_pred -HHHHHh-cCCCCcEecCCCCCCeeeCCCCcEEEeeec
Q 005278 525 -LEYLHH-GHSTPMVHCDLKPNNILLDENMTAHVSDFG 560 (704)
Q Consensus 525 -l~~Lh~-~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfg 560 (704)
...|.. ...+.++|+|+.+.|++++.++ +.|.|+.
T Consensus 196 l~~~L~~~~~~~~l~HgD~~~~N~l~~~~~-~~~iD~~ 232 (312)
T 3jr1_A 196 VADTLSKHNPKPSILHGNLWIENCIQVDDK-IFVCNPA 232 (312)
T ss_dssp HHHHHTTCCCCCEEECSSCSGGGEEEETTE-EEECSCC
T ss_pred HHHHhccCCCCceeEeCCCCcCcEeecCCC-eEEEcCc
Confidence 123321 1256799999999999999887 8888973
No 431
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=97.59 E-value=0.00014 Score=72.64 Aligned_cols=79 Identities=15% Similarity=0.135 Sum_probs=58.5
Q ss_pred CCCCccccccccCceEEEEEEECCCCEEEEEEeeccchhhhHHHHHHHHHHHhcCC---CCCceEEeeeeeCCeEEEEEe
Q 005278 415 NGFNECNLLGTGSFGSVYKGTLFDGTNVAIKVFNLQLERASRSFDSECEILRSIRH---RNLIKIISNCCNIDFKALVLE 491 (704)
Q Consensus 415 ~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h---~niv~l~~~~~~~~~~~lv~e 491 (704)
.....++.+|.|..+.||+.+..||+.+.||+...........|..|.+.|+.+.. -.+.+++++. ..++|||
T Consensus 15 ~~v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~~----~~~lv~e 90 (288)
T 3f7w_A 15 REVAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAME 90 (288)
T ss_dssp CCEEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEEE
T ss_pred CCeEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEecc----CceEEEE
Confidence 34455678999999999999999999999998754433334568899999999842 2345555542 2378999
Q ss_pred ccCCCC
Q 005278 492 FMPNGS 497 (704)
Q Consensus 492 ~~~~gs 497 (704)
|++++.
T Consensus 91 ~l~~~~ 96 (288)
T 3f7w_A 91 WVDERP 96 (288)
T ss_dssp CCCCCC
T ss_pred eecccC
Confidence 998764
No 432
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}
Probab=97.34 E-value=0.00077 Score=71.29 Aligned_cols=80 Identities=14% Similarity=0.121 Sum_probs=48.5
Q ss_pred CCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCCCcceeccccccccccCCcccCCC---CCCcccceeeHHHHHH
Q 005278 532 HSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGDDSVIQTMTIATIGYMAPEYGSEG---IISPKSDVYSYGILLM 608 (704)
Q Consensus 532 h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~---~~~~~~Dv~s~Gv~l~ 608 (704)
+...++|+|++|.||+++.++ ++++||+.+..-....+ .......-...|++|+..... ......++......+|
T Consensus 230 ~~~~liHGDl~~~Nil~~~~~-~~lID~e~a~~G~p~~D-la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (420)
T 2pyw_A 230 RAQALIHGDLHTGSVMVTQDS-TQVIDPEFSFYGPMGFD-IGAYLGNLILAFFAQDGHATQENDRKEYKQWILRTIEQTW 307 (420)
T ss_dssp BCCEEECSCCSGGGEEECSSC-EEECCCTTCEEECHHHH-HHHHHHHHHHHHHHGGGGCCSSCCSHHHHHHHHHHHHHHH
T ss_pred CCCeEEecCCCCCcEEEeCCC-CEEEeCcccccCchHHH-HHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHHH
Confidence 567899999999999999876 99999998875322110 000000012346666654321 1122345557777777
Q ss_pred HHhhC
Q 005278 609 ETFTR 613 (704)
Q Consensus 609 el~tg 613 (704)
+.+++
T Consensus 308 ~~y~~ 312 (420)
T 2pyw_A 308 NLFNK 312 (420)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77765
No 433
>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6
Probab=97.13 E-value=0.0036 Score=63.37 Aligned_cols=156 Identities=10% Similarity=0.087 Sum_probs=87.2
Q ss_pred cchHHHHHHhCCCCc-----cccccccCceEEEEEEECCCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCC--CceEE
Q 005278 405 TSYLDIQRATNGFNE-----CNLLGTGSFGSVYKGTLFDGTNVAIKVFNLQLERASRSFDSECEILRSIRHRN--LIKII 477 (704)
Q Consensus 405 ~~~~~~~~~~~~~~~-----~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n--iv~l~ 477 (704)
.+..++......|.. .+.|+.|....+|+....+| .+++|+.... .....+..|..+++.+.... +.+++
T Consensus 7 ~~~~~l~~~l~~~~~~~~~~~~~i~~G~~n~~~~v~~~~g-~~vlk~~~~~--~~~~~l~~e~~~l~~L~~~g~~vP~~~ 83 (322)
T 2ppq_A 7 ITEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTTKD-PLILTLYEKR--VEKNDLPFFLGLMQHLAAKGLSCPLPL 83 (322)
T ss_dssp CCHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEESSC-CEEEEEECC-----CCHHHHHHHHHHHHHHTTCCCCCBC
T ss_pred CCHHHHHHHHHhCCCCcceEeeccCCCcccceEEEEeCCc-cEEEEEeCCC--CCHHHHHHHHHHHHHHHHCCCCCCccc
Confidence 344455555555543 34577788889999987655 6889987642 12345667888887774222 23333
Q ss_pred ee------eeeCCeEEEEEeccCCCCHHH--------------HHhhC--C--Cc-------cCHHHHHH----------
Q 005278 478 SN------CCNIDFKALVLEFMPNGSLEK--------------WLYSH--N--YF-------LGILERLN---------- 516 (704)
Q Consensus 478 ~~------~~~~~~~~lv~e~~~~gsL~~--------------~l~~~--~--~~-------~~~~~~~~---------- 516 (704)
.. ....+..+++++|++|..+.. .++.. . .. ..|...+.
T Consensus 84 ~~~~g~~~~~~~g~~~~l~~~l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 163 (322)
T 2ppq_A 84 PRKDGELLGELSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVE 163 (322)
T ss_dssp CBTTCCSCEEETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGTS
T ss_pred CCCCCCEEEEECCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHhhh
Confidence 21 122356789999998765311 11110 0 00 11222110
Q ss_pred --HHHHHHHHHHHHHhc----CCCCcEecCCCCCCeeeCCCCcEEEeeeccce
Q 005278 517 --IMIDVGLALEYLHHG----HSTPMVHCDLKPNNILLDENMTAHVSDFGISK 563 (704)
Q Consensus 517 --i~~~i~~~l~~Lh~~----h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~ 563 (704)
+...+...++.++.. ...+++|+|+.+.||+++.+..+.++||+.+.
T Consensus 164 ~~l~~~l~~~~~~l~~~~~~~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~ 216 (322)
T 2ppq_A 164 KGLREEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFAC 216 (322)
T ss_dssp TTHHHHHHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred hhhHHHHHHHHHHHHhhCcccCCcccCCCCCCccCEEEeCCceEEEecchhcc
Confidence 001234455555432 23568999999999999987666899998775
No 434
>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}
Probab=97.07 E-value=0.0022 Score=65.37 Aligned_cols=139 Identities=12% Similarity=0.062 Sum_probs=74.1
Q ss_pred ccccccCceE-EEEEEECCCCEEEEEEeeccchhhhHHHHHHHHHHHhcCC--CCCceEEeeeeeCCeEEEEEeccCCCC
Q 005278 421 NLLGTGSFGS-VYKGTLFDGTNVAIKVFNLQLERASRSFDSECEILRSIRH--RNLIKIISNCCNIDFKALVLEFMPNGS 497 (704)
Q Consensus 421 ~~ig~G~~g~-V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h--~niv~l~~~~~~~~~~~lv~e~~~~gs 497 (704)
+.++.|+... +|+....+|+.+++|...... ...+..|+.+++.+.. -.+.+++.+..+.+ +++||++.+.+
T Consensus 24 ~~l~gg~s~~~~~r~~~~~~~~~vlk~~~~~~---~~~~~~e~~~l~~L~~~g~~vP~v~~~d~~~g--~ll~e~l~~~~ 98 (333)
T 3csv_A 24 TPLAGDASSRRYQRLRSPTGAKAVLMDWSPEE---GGDTQPFVDLAQYLRNLDISAPEIYAEEHARG--LLLIEDLGDAL 98 (333)
T ss_dssp CC--------CCEEEECTTCCEEEEEECCTTT---TCCSHHHHHHHHHHHHTTCBCCCEEEEETTTT--EEEECCCCSCB
T ss_pred eECCCCCCCceEEEEEcCCCCeEEEEECCCCC---CccccHHHHHHHHHHhCCCCCCceeeecCCCC--EEEEeeCCCcc
Confidence 4566665554 667765446777787643321 1345567777777742 23556676643333 68999998766
Q ss_pred HHHHHhhCC-------------------------CccCHHHHH-------H-H------------HHHHHHHHHHHH---
Q 005278 498 LEKWLYSHN-------------------------YFLGILERL-------N-I------------MIDVGLALEYLH--- 529 (704)
Q Consensus 498 L~~~l~~~~-------------------------~~~~~~~~~-------~-i------------~~~i~~~l~~Lh--- 529 (704)
+.+++.... ..++..... . . ...+...++.+.
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~ 178 (333)
T 3csv_A 99 FTEVINNDPAQEMPLYRAAVDLLIHLHDAQTPELARLDPETLSEMTRLAFSEYRYAILGDAAEDNRKRFEHRFAQILSAQ 178 (333)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHHHHHTSCCCCCCBCCHHHHHHTTTHHHHTHHHHHHSSCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhcCCCccHHHHHHHHHHHHHHHhcCCCccCCccCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhc
Confidence 655443110 001111100 0 0 001111222221
Q ss_pred hcCCCCcEecCCCCCCeeeCCC----CcEEEeeecccee
Q 005278 530 HGHSTPMVHCDLKPNNILLDEN----MTAHVSDFGISKL 564 (704)
Q Consensus 530 ~~h~~~ivH~dlk~~Nil~~~~----~~~kl~Dfgla~~ 564 (704)
..+...++|||+.+.||+++.+ +.+.|+||+.+..
T Consensus 179 ~~~~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~ 217 (333)
T 3csv_A 179 LEGDMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKL 217 (333)
T ss_dssp CCSCCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEE
T ss_pred ccCCCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCc
Confidence 1235679999999999999875 6799999998875
No 435
>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6
Probab=96.90 E-value=0.0047 Score=62.71 Aligned_cols=140 Identities=12% Similarity=0.116 Sum_probs=81.3
Q ss_pred ccccccCceEEEEEEECCCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCC--CceEEee-----eeeCCeEEEEEecc
Q 005278 421 NLLGTGSFGSVYKGTLFDGTNVAIKVFNLQLERASRSFDSECEILRSIRHRN--LIKIISN-----CCNIDFKALVLEFM 493 (704)
Q Consensus 421 ~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n--iv~l~~~-----~~~~~~~~lv~e~~ 493 (704)
..++ |....||+....+|+.+++|...... .....+..|..+++.+.... +.+++.. ....+..+++|||+
T Consensus 32 ~~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~-~~~~~~~~E~~~~~~L~~~g~~vp~~~~~~g~~~~~~~g~~~~l~~~i 109 (328)
T 1zyl_A 32 TPLN-SYENRVYQFQDEDRRRFVVKFYRPER-WTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSV 109 (328)
T ss_dssp EEEC-CSSSEEEEECCTTCCCEEEEEECTTT-SCHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECC
T ss_pred Eeec-CcccceEEEEcCCCCEEEEEEcCCCC-CCHHHHHHHHHHHHHHHHcCCeecceeecCCcEEEEECCEEEEEEEec
Confidence 4566 88889999877678789999986321 13456777888888774222 3334432 12245567899999
Q ss_pred CCCCHH-----H------H---Hhh--C------CCccCHHHH----HHH---------------HHHHHHHHHHHHhc-
Q 005278 494 PNGSLE-----K------W---LYS--H------NYFLGILER----LNI---------------MIDVGLALEYLHHG- 531 (704)
Q Consensus 494 ~~gsL~-----~------~---l~~--~------~~~~~~~~~----~~i---------------~~~i~~~l~~Lh~~- 531 (704)
+|.++. . . ++. . ....++... ..+ ...+...++.+...
T Consensus 110 ~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 189 (328)
T 1zyl_A 110 GGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDATLIPSGLKAAFLKATDELIAAVTAHW 189 (328)
T ss_dssp CCEECCSSCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHTCSSSCTTTHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCccCCCCCHHHHHhhHHHHHhhcCcCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 875431 1 0 111 0 011222111 000 11111223333221
Q ss_pred ---CCCCcEecCCCCCCeeeCCCCcEEEeeecccee
Q 005278 532 ---HSTPMVHCDLKPNNILLDENMTAHVSDFGISKL 564 (704)
Q Consensus 532 ---h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~ 564 (704)
....++|+|+.+.||+++ + .+.++||+.+..
T Consensus 190 ~~~~~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~~ 223 (328)
T 1zyl_A 190 REDFTVLRLHGDCHAGNILWR-D-GPMFVDLDDARN 223 (328)
T ss_dssp CSCSCCEECCSSCSGGGEEES-S-SEEECCCTTCCE
T ss_pred hhcCCeeeeeCCCCcccEeEc-C-CCEEEECCCCCc
Confidence 345689999999999999 4 899999987754
No 436
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}
Probab=96.89 E-value=0.0027 Score=63.64 Aligned_cols=71 Identities=8% Similarity=0.053 Sum_probs=45.0
Q ss_pred cccccccCceEEEEEEECCCCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCCC-ceEEeeeeeCCeEEEEEecc-CCCC
Q 005278 420 CNLLGTGSFGSVYKGTLFDGTNVAIKVFNLQLERASRSFDSECEILRSIRHRNL-IKIISNCCNIDFKALVLEFM-PNGS 497 (704)
Q Consensus 420 ~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni-v~l~~~~~~~~~~~lv~e~~-~~gs 497 (704)
.+.|+.|....+|+. +.+++|+....... ......|..+++.+....+ .+++++. .+.-++++||+ ++.+
T Consensus 23 i~~l~gG~tN~~~~~-----~~~vlR~~~~~~~~-~~~r~~E~~~l~~l~~~g~~P~~~~~~--~~~~~~v~e~i~~g~~ 94 (301)
T 3dxq_A 23 PLERLGGLTNLVFRA-----GDLCLRIPGKGTEE-YINRANEAVAAREAAKAGVSPEVLHVD--PATGVMVTRYIAGAQT 94 (301)
T ss_dssp CEEEESCSSEEEEEE-----TTEEEEEECC-----CCCHHHHHHHHHHHHHTTSSCCEEEEC--TTTCCEEEECCTTCEE
T ss_pred eeEcCCcccccccee-----eeEEEECCCCCccc-eeCHHHHHHHHHHHHHcCCCCceEEEE--CCCCEEEEeecCCCcc
Confidence 678999999999998 56888987543211 1223568888877743333 4555543 33346899999 5544
Q ss_pred H
Q 005278 498 L 498 (704)
Q Consensus 498 L 498 (704)
+
T Consensus 95 l 95 (301)
T 3dxq_A 95 M 95 (301)
T ss_dssp C
T ss_pred C
Confidence 4
No 437
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8
Probab=96.84 E-value=0.0013 Score=69.64 Aligned_cols=72 Identities=15% Similarity=0.240 Sum_probs=49.5
Q ss_pred cccccccCceEEEEEEECC--------CCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCCC-ceEEeeeeeCCeEEEEE
Q 005278 420 CNLLGTGSFGSVYKGTLFD--------GTNVAIKVFNLQLERASRSFDSECEILRSIRHRNL-IKIISNCCNIDFKALVL 490 (704)
Q Consensus 420 ~~~ig~G~~g~V~~~~~~~--------~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni-v~l~~~~~~~~~~~lv~ 490 (704)
.+.|+.|....||+....+ ++.+++|+.... ...+.+..|..+++.+...++ .++++.+.+ .+|+
T Consensus 78 v~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~--~~~~~li~E~~~l~~L~~~g~~P~l~~~~~~----g~v~ 151 (429)
T 1nw1_A 78 ISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNP--ETESHLVAESVIFTLLSERHLGPKLYGIFSG----GRLE 151 (429)
T ss_dssp EEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSC--CCHHHHHHHHHHHHHHHHTTSSSCEEEEETT----EEEE
T ss_pred EEEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCC--CcHHHHHHHHHHHHHHHhCCCCCcEEEEeCC----CEEE
Confidence 3578888889999998653 578999987432 111455679999988853333 567766543 3899
Q ss_pred eccCCCC
Q 005278 491 EFMPNGS 497 (704)
Q Consensus 491 e~~~~gs 497 (704)
||+++.+
T Consensus 152 e~l~G~~ 158 (429)
T 1nw1_A 152 EYIPSRP 158 (429)
T ss_dssp CCCCEEE
T ss_pred EEeCCcc
Confidence 9998643
No 438
>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A
Probab=96.82 E-value=0.0044 Score=57.29 Aligned_cols=104 Identities=13% Similarity=0.040 Sum_probs=69.6
Q ss_pred CCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccceecCCCCCcceec
Q 005278 496 GSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISKLLGEGDDSVIQT 575 (704)
Q Consensus 496 gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~~~~~~~~~~~~ 575 (704)
-+|.+.|...+.++++.++|.++.|.+.+|.-+-.. ..+ ..+=+.|..|++..+|.|...+ +.+.
T Consensus 33 vSL~eIL~~~~~PlsEEqaWALc~Qc~~~L~~~~~~-~~~-~~~i~~~~~i~l~~dG~V~f~~-~~s~------------ 97 (229)
T 2yle_A 33 LSLEEILRLYNQPINEEQAWAVCYQCCGSLRAAARR-RQP-RHRVRSAAQIRVWRDGAVTLAP-AADD------------ 97 (229)
T ss_dssp EEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHT-TCC-CCCCCSGGGEEEETTSCEEECC-C---------------
T ss_pred ccHHHHHHHcCCCcCHHHHHHHHHHHHHHHHhhhhc-ccC-CceecCCcceEEecCCceeccc-cccc------------
Confidence 389999998888899999999999999998766221 111 1333457889999999888764 1110
Q ss_pred cccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCC
Q 005278 576 MTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPT 617 (704)
Q Consensus 576 ~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~ 617 (704)
.....+.|||... ...+.+.=|||+|+++|.-+--..|-
T Consensus 98 --~~~~~~~~pe~~~-~~~te~~~IysLG~tLY~ALDygL~e 136 (229)
T 2yle_A 98 --AGEPPPVAGKLGY-SQCMETEVIESLGIIIYKALDYGLKE 136 (229)
T ss_dssp -----------CCSS-SSSCHHHHHHHHHHHHHHHHTTTCCT
T ss_pred --ccccCCCChhhcc-ccchHHHHHHHHHHHHHHHhhcCCCc
Confidence 1122456888753 34567889999999999998855553
No 439
>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*
Probab=96.80 E-value=0.0018 Score=66.81 Aligned_cols=139 Identities=12% Similarity=0.119 Sum_probs=80.7
Q ss_pred ccccccCceEEEEEEEC--------CCCEEEEEEeeccchhhhHHHHHHHHHHHhcC-CCCCceEEeeeeeCCeEEEEEe
Q 005278 421 NLLGTGSFGSVYKGTLF--------DGTNVAIKVFNLQLERASRSFDSECEILRSIR-HRNLIKIISNCCNIDFKALVLE 491 (704)
Q Consensus 421 ~~ig~G~~g~V~~~~~~--------~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e 491 (704)
+.+..|-...+|+.... +++.+++|+.... ......+.+|.++++.+. +.-..++++++.+ .+|||
T Consensus 56 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~-~~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~~----g~v~e 130 (379)
T 3feg_A 56 YPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAI-LQGVDSLVLESVMFAILAERSLGPQLYGVFPE----GRLEQ 130 (379)
T ss_dssp EEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC----CCHHHHHHHHHHHHHHHHTTSSCCEEEEETT----EEEEE
T ss_pred EEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCc-cchHHHHHHHHHHHHHHHhcCCCCeEEEEcCC----ccEEE
Confidence 56777888889998864 2478999986332 223456678999998884 3223566666543 38999
Q ss_pred ccCCCCHHH--------------H---HhhC----CCccC--HHHHHHHHHHHH-------------------HHHHHHH
Q 005278 492 FMPNGSLEK--------------W---LYSH----NYFLG--ILERLNIMIDVG-------------------LALEYLH 529 (704)
Q Consensus 492 ~~~~gsL~~--------------~---l~~~----~~~~~--~~~~~~i~~~i~-------------------~~l~~Lh 529 (704)
|++|.++.. . ++.- ..... +..+.++..++. ..++.|.
T Consensus 131 ~i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~ 210 (379)
T 3feg_A 131 YIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGNLR 210 (379)
T ss_dssp CCSEEECCGGGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTHHHHHHHHH
T ss_pred EecCccCChhHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHHHHHHHHHH
Confidence 999765421 0 1111 11112 233333333221 1223332
Q ss_pred ----h-cCCCCcEecCCCCCCeeeCCC----CcEEEeeecccee
Q 005278 530 ----H-GHSTPMVHCDLKPNNILLDEN----MTAHVSDFGISKL 564 (704)
Q Consensus 530 ----~-~h~~~ivH~dlk~~Nil~~~~----~~~kl~Dfgla~~ 564 (704)
. .....++|+|+.+.||+++.+ +.+.++||..|..
T Consensus 211 ~~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~~ 254 (379)
T 3feg_A 211 KLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSSY 254 (379)
T ss_dssp HHHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCEE
T ss_pred HHHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCCc
Confidence 1 133468999999999999876 7899999988763
No 440
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.78 E-value=0.0023 Score=54.93 Aligned_cols=36 Identities=28% Similarity=0.254 Sum_probs=18.9
Q ss_pred CCEEecccccCCCcccchhhcccccCCCCCCCcEEEccCCCCc
Q 005278 56 LQVLSLAYNYLMTESSAAKWNFLSSLTNCRNLTVLGLASNPLR 98 (704)
Q Consensus 56 L~~L~L~~n~i~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~ 98 (704)
|++|+|++|+|+.++... |..+++|++|+|++|++.
T Consensus 33 l~~L~Ls~N~l~~l~~~~-------f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGL-------LDALPALRTAHLGANPWR 68 (130)
T ss_dssp CSEEECTTSCCSSCCTTT-------GGGCTTCCEEECCSSCCB
T ss_pred CCEEECCCCcCCccChhh-------hhhccccCEEEecCCCee
Confidence 555555555555554433 455555555555555554
No 441
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.76 E-value=0.0018 Score=55.69 Aligned_cols=57 Identities=23% Similarity=0.318 Sum_probs=37.6
Q ss_pred EEEeecCccC-CCCCCCcCCCCCcceeeccCceeeccCCcccccccccceEEecccCCCC
Q 005278 258 NLDLSRNQLS-GDIPTTIGGLENLETLSLADNQFQGPVPKSFGSLISLESLDLSRNNLSG 316 (704)
Q Consensus 258 ~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 316 (704)
.++.+++.++ ..+|..+. ++|+.|+|++|+|+...+..|..+++|+.|+|++|++..
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 5666777665 24444332 357777777777775555667777777778888877764
No 442
>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}
Probab=96.65 E-value=0.0045 Score=65.71 Aligned_cols=74 Identities=16% Similarity=0.187 Sum_probs=48.3
Q ss_pred cccccccCceEEEEEEECC-CCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCCC-ceEEeeeeeCCeEEEEEeccCCCC
Q 005278 420 CNLLGTGSFGSVYKGTLFD-GTNVAIKVFNLQLERASRSFDSECEILRSIRHRNL-IKIISNCCNIDFKALVLEFMPNGS 497 (704)
Q Consensus 420 ~~~ig~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni-v~l~~~~~~~~~~~lv~e~~~~gs 497 (704)
.+.|+.|-...+|+....+ +..+++|+....... .-....|..+++.+...++ .++++++. + .+|+||+++.+
T Consensus 113 i~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~~~-~idR~~E~~vl~~L~~~gl~P~ll~~~~--~--G~v~e~I~G~~ 187 (458)
T 2qg7_A 113 FQIINGGITNILIKVKDMSKQAKYLIRLYGPKTDE-IINREREKKISCILYNKNIAKKIYVFFT--N--GRIEEFMDGYA 187 (458)
T ss_dssp EEEECC--CEEEEEEEETTTTEEEEEEEECC-CCS-CSCHHHHHHHHHHHTTSSSBCCEEEEET--T--EEEEECCCSEE
T ss_pred EEEcCCCeEeEEEEEEECCCCceEEEEECCCChhh-hcCHHHHHHHHHHHHhcCCCCCEEEEeC--C--eEEEEeeCCcc
Confidence 4578888889999998765 478889987432211 1122689999999965555 46777663 2 35999998754
Q ss_pred H
Q 005278 498 L 498 (704)
Q Consensus 498 L 498 (704)
+
T Consensus 188 l 188 (458)
T 2qg7_A 188 L 188 (458)
T ss_dssp C
T ss_pred C
Confidence 3
No 443
>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*
Probab=96.35 E-value=0.0068 Score=62.72 Aligned_cols=72 Identities=11% Similarity=0.208 Sum_probs=44.1
Q ss_pred ccccccCceEEEEEEECC---------CCEEEEEEeeccchhhhHHHHHHHHHHHhcCCCC-CceEEeeeeeCCeEEEEE
Q 005278 421 NLLGTGSFGSVYKGTLFD---------GTNVAIKVFNLQLERASRSFDSECEILRSIRHRN-LIKIISNCCNIDFKALVL 490 (704)
Q Consensus 421 ~~ig~G~~g~V~~~~~~~---------~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n-iv~l~~~~~~~~~~~lv~ 490 (704)
..++.|....+|+....+ ++.+++|+....... ......|.++++.+...+ ..++++.. . -++||
T Consensus 39 ~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~~~-~~~~~~E~~~l~~L~~~g~~P~~~~~~--~--~~~v~ 113 (369)
T 3c5i_A 39 KQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHVDE-LYNTISEFEVYKTMSKYKIAPQLLNTF--N--GGRIE 113 (369)
T ss_dssp EEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTGGG-TSCHHHHHHHHHHHHHTTSSCCEEEEE--T--TEEEE
T ss_pred EEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCccc-eecHHHHHHHHHHHHhcCCCCceEEec--C--CcEEE
Confidence 467788888999998654 268889987543211 112467888888885333 34666544 2 26899
Q ss_pred eccCCCC
Q 005278 491 EFMPNGS 497 (704)
Q Consensus 491 e~~~~gs 497 (704)
||++|.+
T Consensus 114 e~i~G~~ 120 (369)
T 3c5i_A 114 EWLYGDP 120 (369)
T ss_dssp ECCCSEE
T ss_pred EEecCCc
Confidence 9998754
No 444
>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*
Probab=96.13 E-value=0.031 Score=56.89 Aligned_cols=32 Identities=19% Similarity=0.368 Sum_probs=28.0
Q ss_pred CCCcEecCCCCCCeeeCCCCcEEEeeecccee
Q 005278 533 STPMVHCDLKPNNILLDENMTAHVSDFGISKL 564 (704)
Q Consensus 533 ~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~~ 564 (704)
...++|+|+.+.||+++.++.+.++||+.+..
T Consensus 205 ~~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~ 236 (339)
T 3i1a_A 205 KYVLCHSDIHAGNVLVGNEESIYIIDWDEPML 236 (339)
T ss_dssp GCEEECSCCCGGGEEECGGGCEEECCCSSCEE
T ss_pred CceeEeCCCCcCCEEEeCCCeEEEEECCCCee
Confidence 35689999999999999888899999987764
No 445
>3f2s_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics consortium, SGC, hemicholinium-3, alternative splicing, cytoplasm; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 3g15_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=95.82 E-value=0.018 Score=59.58 Aligned_cols=140 Identities=19% Similarity=0.202 Sum_probs=80.7
Q ss_pred ccccccCceEEEEEEECC--------CCEEEEEEeeccchh------------------hhHHHHHHHHHHHhcC-CCCC
Q 005278 421 NLLGTGSFGSVYKGTLFD--------GTNVAIKVFNLQLER------------------ASRSFDSECEILRSIR-HRNL 473 (704)
Q Consensus 421 ~~ig~G~~g~V~~~~~~~--------~~~vavK~~~~~~~~------------------~~~~~~~e~~~l~~l~-h~ni 473 (704)
+.|..|-...+|+....+ ++.|.+++.-..... ..+....|..+++.+. +.-.
T Consensus 58 ~~l~gGlTN~~~~v~~~~~~~~~~~~~~~~llRi~G~~te~~~~~~~~~~~idR~~~~~~~~~~~~E~~~l~~L~~~Gi~ 137 (401)
T 3f2s_A 58 SVIRGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGAILQMRSCNKEGSEQAQKENEFQGAEAMVLESVMFAILAERSLG 137 (401)
T ss_dssp EEEECSSEEEEEEEECCTTCCCSSSCCSEEEEEEEEC-----------------------CHHHHHHHHHHHHHHHTTSS
T ss_pred EEcCCCccCceEEEEeCCCcccccCCCccEEEEeCCCCcccccccccccchhhhhhhhccchhhHHHHHHHHHHHhcCCC
Confidence 456667788999988653 367888887443211 0112335888888884 4345
Q ss_pred ceEEeeeeeCCeEEEEEeccCCCCHHH-------H----------HhhC----CCccC--HHHHHHHHHHHH--------
Q 005278 474 IKIISNCCNIDFKALVLEFMPNGSLEK-------W----------LYSH----NYFLG--ILERLNIMIDVG-------- 522 (704)
Q Consensus 474 v~l~~~~~~~~~~~lv~e~~~~gsL~~-------~----------l~~~----~~~~~--~~~~~~i~~~i~-------- 522 (704)
.++++++.. .+|+||+++-+|.. . ++.. ..... +....++..++.
T Consensus 138 Pkl~~~~~~----G~i~efI~G~~L~~~dl~~p~~~~~iA~~L~~LH~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~ 213 (401)
T 3f2s_A 138 PKLYGIFPQ----GRLEQFIPSRRLDTEELSLPDISAEIAEKMATFHGMKMPFNKEPKWLFGTMEKYLKEVLRIKFTEES 213 (401)
T ss_dssp CCEEEEETT----EEEEECCCEEECCGGGGGSHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSHH
T ss_pred CeEEEEeCC----CeEEEecCCccCCHHHHhhHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhccCcchh
Confidence 577777643 28999998654411 0 1111 11122 122222322221
Q ss_pred --------------HHHH----HHHh-cCCCCcEecCCCCCCeeeCCC------CcEEEeeecccee
Q 005278 523 --------------LALE----YLHH-GHSTPMVHCDLKPNNILLDEN------MTAHVSDFGISKL 564 (704)
Q Consensus 523 --------------~~l~----~Lh~-~h~~~ivH~dlk~~Nil~~~~------~~~kl~Dfgla~~ 564 (704)
..++ +|.. .....++|+|+.+.||+++.+ +.+.++||..|..
T Consensus 214 ~~~~~~~~~~~~l~~e~~~l~~~l~~~~~~~v~~H~Dl~~~Nil~~~~~~~~~~~~~~lID~E~a~~ 280 (401)
T 3f2s_A 214 RIKKLHKLLSYNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY 280 (401)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSCCCEEEECSCCCGGGEEEETTGGGCSSSCEEECCCTTCEE
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhhcCCCeeEEeccCCcccEEEcCCcccCcccceEEEeeccCCc
Confidence 1122 2322 234468999999999999876 7899999987753
No 446
>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}
Probab=94.79 E-value=0.03 Score=58.56 Aligned_cols=74 Identities=11% Similarity=0.210 Sum_probs=48.1
Q ss_pred cccccccCceEEEEEEECC--------CCEEEEEEeeccchhhhHHHHHHHHHHHhcC-CCCCceEEeeeeeCCeEEEEE
Q 005278 420 CNLLGTGSFGSVYKGTLFD--------GTNVAIKVFNLQLERASRSFDSECEILRSIR-HRNLIKIISNCCNIDFKALVL 490 (704)
Q Consensus 420 ~~~ig~G~~g~V~~~~~~~--------~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~ 490 (704)
.+.+..|-...+|+....+ ++.+++|+..... ...-...+|.++++.+. +.-..++++.+. -++|+
T Consensus 75 v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t-~~~idR~~E~~~l~~L~~~gi~P~l~~~~~----~~~I~ 149 (424)
T 3mes_A 75 VKQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHV-GKFYDSKVELDVFRYLSNINIAPNIIADFP----EGRIE 149 (424)
T ss_dssp EEEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCCC--CCCCHHHHHHHHHHHHHTTSSCCEEEEET----TEEEE
T ss_pred EEEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCCc-chhcCHHHHHHHHHHHHhcCCCCCEEEEcC----CCEEE
Confidence 3567778888999998653 5789999864432 11123467888888884 222445565332 26899
Q ss_pred eccCCCCH
Q 005278 491 EFMPNGSL 498 (704)
Q Consensus 491 e~~~~gsL 498 (704)
||++|.++
T Consensus 150 efI~G~~l 157 (424)
T 3mes_A 150 EFIDGEPL 157 (424)
T ss_dssp ECCCSEEC
T ss_pred EEeCCccC
Confidence 99998653
No 447
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=88.68 E-value=0.11 Score=34.10 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=12.8
Q ss_pred cchhhHHHHHHHHHhhhhhhccCCC
Q 005278 364 LPPITSIVLIAIVIIFFIRHRNRST 388 (704)
Q Consensus 364 ~~~~~~~~~v~~~~~~~~~~r~~~~ 388 (704)
+++++.+++++..+++|+|+|+...
T Consensus 18 VgGv~~~~ii~~~~~~~~RRr~~~~ 42 (44)
T 2ks1_B 18 VGALLLLLVVALGIGLFMRRRHIVR 42 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCS
T ss_pred hHHHHHHHHHHHHHHHHhhhhHhhc
Confidence 3334444444555566666665443
No 448
>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=88.37 E-value=0.51 Score=49.04 Aligned_cols=29 Identities=34% Similarity=0.463 Sum_probs=24.8
Q ss_pred cEecCCCCCCeee------CCCCcEEEeeecccee
Q 005278 536 MVHCDLKPNNILL------DENMTAHVSDFGISKL 564 (704)
Q Consensus 536 ivH~dlk~~Nil~------~~~~~~kl~Dfgla~~ 564 (704)
++|+|+.+.||++ +++..+.++||.+|..
T Consensus 246 fcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~~ 280 (401)
T 3g15_A 246 FCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY 280 (401)
T ss_dssp EECSCCCGGGEEEETTGGGCSSCCEEECCCTTCEE
T ss_pred eEEecCCCCeEEEecCcccCcCCeEEEechHhccC
Confidence 5799999999999 4567799999988764
No 449
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=85.72 E-value=0.4 Score=31.39 Aligned_cols=27 Identities=11% Similarity=0.437 Sum_probs=14.2
Q ss_pred ecchhhHHHHHHHHHhhhhhhccCCCC
Q 005278 363 ILPPITSIVLIAIVIIFFIRHRNRSTK 389 (704)
Q Consensus 363 ~~~~~~~~~~v~~~~~~~~~~r~~~~~ 389 (704)
++++++.+++++..+++|+|+|++..+
T Consensus 16 VVgGv~~v~ii~~~~~~~~RRRr~~~k 42 (44)
T 2l2t_A 16 VIGGLFILVIVGLTFAVYVRRKSIKKK 42 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred ehHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 333444444455555666666655443
No 450
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=79.51 E-value=3.4 Score=32.90 Aligned_cols=48 Identities=15% Similarity=0.230 Sum_probs=25.7
Q ss_pred ccccccCchhhcCCCCCCEEecccccCCCcccchhhcccccCCCCCCCcEEEccCC
Q 005278 40 NSFSGLIPNTFGNLGSLQVLSLAYNYLMTESSAAKWNFLSSLTNCRNLTVLGLASN 95 (704)
Q Consensus 40 n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~l~~L~~L~L~~n 95 (704)
..++.+...+|.++++|+.+.|-.+ ++.++..+ |.+|.+|+.+.+...
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~a-------F~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGM-------FSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTS-------STTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHH-------HhccCCccEEEEcCC
Confidence 3444555555666666666655533 44444444 556666666655543
No 451
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=72.29 E-value=0.41 Score=50.74 Aligned_cols=60 Identities=10% Similarity=0.044 Sum_probs=17.2
Q ss_pred ccccccccCceEEEEEEECC-CCEEEE------EEeeccc--hhhhHHHHHHHHHHHhcCCCCCceEEeeee
Q 005278 419 ECNLLGTGSFGSVYKGTLFD-GTNVAI------KVFNLQL--ERASRSFDSECEILRSIRHRNLIKIISNCC 481 (704)
Q Consensus 419 ~~~~ig~G~~g~V~~~~~~~-~~~vav------K~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~ 481 (704)
..+.+| ||.||+|.+.. ..+||| |..+... ......+.+|..+++..+|||+++..++..
T Consensus 146 l~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~ 214 (463)
T 3cxl_A 146 IYEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKV 214 (463)
T ss_dssp STTTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEEE
T ss_pred ccccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceEE
Confidence 345666 99999999764 467888 6654322 122346788889999999999999877653
No 452
>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}
Probab=71.53 E-value=14 Score=34.04 Aligned_cols=117 Identities=11% Similarity=0.071 Sum_probs=74.3
Q ss_pred CCCCCceEEeeeeeCCeEEEEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeee
Q 005278 469 RHRNLIKIISNCCNIDFKALVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILL 548 (704)
Q Consensus 469 ~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~ 548 (704)
.||++ -...-.+.+...+.++.-+++.=...++ ..+...+++++..++...+ .|...-.|--+.|+|+++
T Consensus 48 ~~~~f--~~~I~~~eD~~~i~y~~~~~~~~f~~i~----~~~~~eKlrll~nl~~L~~----~~~~~r~tf~l~P~NL~f 117 (219)
T 4ano_A 48 VDPCI--VRDIDVSEDEVKVVIKPPSSFLTFAAIR----KTTLLSRIRAAIHLVSKVK----HHSARRLIFIVCPENLMF 117 (219)
T ss_dssp SCSSS--EEEEEECSSEEEEEEECCTTCEEHHHHH----TSCHHHHHHHHHHHHHHHS----SCCSSSEECCCCGGGEEE
T ss_pred cCCCC--CeEEEEeCCEEEEEEEcCcccCcHHHHH----hcCHHHHHHHHHHHHHHHH----HhhhCceeEEEeCceEEE
Confidence 57877 4444466777677666554432222332 2677888988888876554 233456788899999999
Q ss_pred CCCCcEEEeeeccceecCCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCc
Q 005278 549 DENMTAHVSDFGISKLLGEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNE 619 (704)
Q Consensus 549 ~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~ 619 (704)
|.++.+++.-.|+-..+ +|.-. +...=.-.+=+++..++.++..|+.
T Consensus 118 ~~~~~p~i~hRGi~~~l-------------------pP~e~-----~ee~fl~qyKali~all~~K~~Fe~ 164 (219)
T 4ano_A 118 NRALEPFFLHVGVKESL-------------------PPDEW-----DDERLLREVKATVLALTEGEYRFDE 164 (219)
T ss_dssp CTTCCEEESCCEETTTB-------------------SSCSC-----CHHHHHHHHHHHHHHHTTCSSCHHH
T ss_pred eCCCcEEEEEcCCcccC-------------------CCCCC-----CHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 99999999877754332 22211 1111122456677888888887765
No 453
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=68.64 E-value=0.9 Score=29.65 Aligned_cols=16 Identities=19% Similarity=0.530 Sum_probs=7.8
Q ss_pred HHHHHHhhhhhhccCC
Q 005278 372 LIAIVIIFFIRHRNRS 387 (704)
Q Consensus 372 ~v~~~~~~~~~~r~~~ 387 (704)
+++.++++|+|||+..
T Consensus 26 i~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 26 VLGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHHCSC
T ss_pred HHHHHHHhheehhhhh
Confidence 3344445555655443
No 454
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=66.42 E-value=6.2 Score=31.38 Aligned_cols=50 Identities=14% Similarity=0.143 Sum_probs=42.7
Q ss_pred CCcCcccCCccccCCCCCCEEeccCccccccCchhhcCCCCCCEEeccccc
Q 005278 15 DNKLSGTIPNSITNASKLIMLDLSSNSFSGLIPNTFGNLGSLQVLSLAYNY 65 (704)
Q Consensus 15 ~~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 65 (704)
+..++.+-..+|.++.+|+++.|-.+ ++.+...+|.++.+|+.+.+....
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCSC
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCCC
Confidence 45677777889999999999999775 555999999999999999997653
No 455
>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}
Probab=65.19 E-value=9.7 Score=35.03 Aligned_cols=121 Identities=12% Similarity=0.101 Sum_probs=77.7
Q ss_pred CCCCCceEEeeeeeCCeEEEEEeccCCCCHHHHHhhCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCcEecCCCCCCeee
Q 005278 469 RHRNLIKIISNCCNIDFKALVLEFMPNGSLEKWLYSHNYFLGILERLNIMIDVGLALEYLHHGHSTPMVHCDLKPNNILL 548 (704)
Q Consensus 469 ~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~h~~~ivH~dlk~~Nil~ 548 (704)
.||+.+.. .+-.+.+.+.+.++.-+ +...|-. -...+...+++++..|+...+++ ..=+|--+.|+|+++
T Consensus 43 ~~~~Fl~~-~I~e~eD~v~~~y~~~~--~~~~f~~--ik~~~~~eKlr~l~ni~~l~~~~-----~~r~tf~L~P~NL~f 112 (215)
T 4ann_A 43 HSPYFIDA-ELTELRDSFQIHYDIND--NHTPFDN--IKSFTKNEKLRYLLNIKNLEEVN-----RTRYTFVLAPDELFF 112 (215)
T ss_dssp CCTTBCCE-EEEECSSEEEEEECCCT--TSEEGGG--GGGSCHHHHHHHHHHGGGGGGGG-----GSSEECCCSGGGEEE
T ss_pred cCCcccce-EEEEcccEEEEEEEcCc--ccCCHHH--HHhcCHHHHHHHHHHHHHHHHHh-----cCceEEEEecceEEE
Confidence 58888866 45556666555555433 2333222 12367788999999998877555 224788899999999
Q ss_pred CCCCcEEEeeeccceecCCCCCcceeccccccccccCCcccCCCCCCcccceeeHHHHHHHHhhCCCCCCccccc
Q 005278 549 DENMTAHVSDFGISKLLGEGDDSVIQTMTIATIGYMAPEYGSEGIISPKSDVYSYGILLMETFTRKKPTNEIFIG 623 (704)
Q Consensus 549 ~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tg~~p~~~~~~~ 623 (704)
+.++.+++.-.|+-..+.+.. .+...=.-.+=+++..+++++..|+....+
T Consensus 113 ~~~~~p~i~~RGik~~l~P~~------------------------~~ee~fL~qyKAliiall~~K~~Fe~l~~G 163 (215)
T 4ann_A 113 TRDGLPIAKTRGLQNVVDPLP------------------------VSEAEFLTRYKALVICAFNEKQSFDALVEG 163 (215)
T ss_dssp CTTSCEEESCCEETTTBSCCC------------------------CCHHHHHHHHHHHHHHHHCTTCCHHHHHHS
T ss_pred cCCCCEEEEEccCccCCCCCC------------------------CCHHHHHHHHHHHHHHHHcCCCCHHHHHcC
Confidence 999999998777644332211 111111224567888899999988765443
No 456
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=62.78 E-value=2.5 Score=26.73 Aligned_cols=20 Identities=15% Similarity=0.237 Sum_probs=9.7
Q ss_pred chhhHHHHHHHHHhhhhhhc
Q 005278 365 PPITSIVLIAIVIIFFIRHR 384 (704)
Q Consensus 365 ~~~~~~~~v~~~~~~~~~~r 384 (704)
+.++++++++.+++|++|||
T Consensus 19 G~v~gv~li~~l~~~~~rrr 38 (38)
T 2k1k_A 19 GLLLGAALLLGILVFRSRRA 38 (38)
T ss_dssp HHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHeecC
Confidence 33444444555555555543
No 457
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*
Probab=41.75 E-value=3.9e+02 Score=29.32 Aligned_cols=45 Identities=22% Similarity=0.194 Sum_probs=32.6
Q ss_pred HHHHHHHHHHH--HHHHHHHhcCCCCcEecCCCCCCeeeCCCCcEEEeeeccce
Q 005278 512 LERLNIMIDVG--LALEYLHHGHSTPMVHCDLKPNNILLDENMTAHVSDFGISK 563 (704)
Q Consensus 512 ~~~~~i~~~i~--~~l~~Lh~~h~~~ivH~dlk~~Nil~~~~~~~kl~Dfgla~ 563 (704)
..+..++..+| ..+.|+ +-=+|=.++|||++.+|++.=+|||.+-
T Consensus 529 ~ar~nF~~SlA~~Svv~YI-------LGlGDRH~~NILid~tG~v~HIDFG~~f 575 (696)
T 2x6h_A 529 EVMDTYIKSCAGYCVITYL-------LGVGDRHLDNLLLTTNGKLFHIDFGYIL 575 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HTCCCCCTTTEEECTTSCEEECCCCSCT
T ss_pred HHHHHHHHHHHHHHHHHHH-------ccCCCCCCcceEEeCCCCEEEEeehhhh
Confidence 34455555544 345666 2236888999999999999999999874
No 458
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=37.52 E-value=12 Score=26.51 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=11.0
Q ss_pred eecchhhHHHHHHHHHhh
Q 005278 362 YILPPITSIVLIAIVIIF 379 (704)
Q Consensus 362 ~~~~~~~~~~~v~~~~~~ 379 (704)
+++++++++++++.+.++
T Consensus 12 ivlGg~~~lll~~glcI~ 29 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIF 29 (70)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH
Confidence 456666777666665544
No 459
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=32.06 E-value=5.1e+02 Score=27.86 Aligned_cols=82 Identities=12% Similarity=0.081 Sum_probs=49.7
Q ss_pred ceEEeeeeeCCeEEEEEeccCCCCHHHHH----------hhCC------CccCHHHHHHHHHHHHH--HHHHHHhcCCCC
Q 005278 474 IKIISNCCNIDFKALVLEFMPNGSLEKWL----------YSHN------YFLGILERLNIMIDVGL--ALEYLHHGHSTP 535 (704)
Q Consensus 474 v~l~~~~~~~~~~~lv~e~~~~gsL~~~l----------~~~~------~~~~~~~~~~i~~~i~~--~l~~Lh~~h~~~ 535 (704)
++.+.+........+ .|++++.++.+.+ .+.. ....+..+..++..+|- .+.|+ .|
T Consensus 402 i~~Y~Vipls~~~Gl-IE~V~~~tl~~il~~~~~l~~~f~~~~~~~~~~~~~~~~a~~nF~~S~A~ySvv~YI-----LG 475 (614)
T 3ls8_A 402 LTPYKVLATSTKHGF-MQFIQSVPVAEVLDTEGSIQNFFRKYAPSENGPNGISAEVMDTYVKSCAGYCVITYI-----LG 475 (614)
T ss_dssp CCCCCEEESSSSEEE-EECCCCEEHHHHHHHTSSHHHHHHHHSBCTTSGGGBCHHHHHHHHHHHHHHHHHHHH-----HT
T ss_pred eeccEEEEecCCCce-EEEeCCccHHHHHHccChHHHHHHHhCCCccccccccHHHHHHHHHHHHHHhHhhee-----ee
Confidence 344455544444443 5777765555444 3211 11234555556655443 46677 22
Q ss_pred cEecCCCCCCeeeCCCCcEEEeeeccce
Q 005278 536 MVHCDLKPNNILLDENMTAHVSDFGISK 563 (704)
Q Consensus 536 ivH~dlk~~Nil~~~~~~~kl~Dfgla~ 563 (704)
=+|=.++|||++.+|++.=+|||.+-
T Consensus 476 --igDRH~~NILld~tG~v~HIDFG~~f 501 (614)
T 3ls8_A 476 --VGDRHLDNLLLTKTGKLFHIDFGYIL 501 (614)
T ss_dssp --CCCCCTTSEEECTTSCEEECCCSSCT
T ss_pred --ccCCCCcceeEcCCCCEeeeehHHhh
Confidence 35777999999999999999999874
No 460
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=20.05 E-value=18 Score=22.31 Aligned_cols=7 Identities=29% Similarity=0.501 Sum_probs=3.8
Q ss_pred hhhhhhc
Q 005278 378 IFFIRHR 384 (704)
Q Consensus 378 ~~~~~~r 384 (704)
.+++|||
T Consensus 28 ~~~iRRr 34 (35)
T 1iij_A 28 GILIKRR 34 (35)
T ss_dssp THHHHHC
T ss_pred heEEeec
Confidence 4555555
Done!