BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005279
(704 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UGF|A Chain A, Crystal Structure Of A 6-Sst6-Sft From Pachysandra
Terminalis
pdb|3UGF|B Chain B, Crystal Structure Of A 6-Sst6-Sft From Pachysandra
Terminalis
pdb|3UGG|A Chain A, Crystal Structure Of A 6-Sst6-Sft From Pachysandra
Terminalis In Complex With 1-Kestose
pdb|3UGG|B Chain B, Crystal Structure Of A 6-Sst6-Sft From Pachysandra
Terminalis In Complex With 1-Kestose
pdb|3UGH|A Chain A, Crystal Structure Of A 6-Sst6-Sft From Pachysandra
Terminalis In Complex With 6-Kestose
pdb|3UGH|B Chain B, Crystal Structure Of A 6-Sst6-Sft From Pachysandra
Terminalis In Complex With 6-Kestose
Length = 546
Score = 753 bits (1945), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/561 (62%), Positives = 437/561 (77%), Gaps = 17/561 (3%)
Query: 101 FGSRTASYPWTNNMLSWQRTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDI 160
F YPW+N LSWQRTAFHFQP+++WM+DP+GP+FYKGWYH FYQYNP+ +WG+
Sbjct: 1 FPDNAVPYPWSNAQLSWQRTAFHFQPERSWMSDPDGPIFYKGWYHFFYQYNPDNPVWGNN 60
Query: 161 VWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILPDGKLMMLYTGSTNESVQVQN 220
WGH VS+DLIHW +LPLA+ ADQWYD+ GV++GSAT LPDG++MMLYTG T E V++ +
Sbjct: 61 TWGHTVSRDLIHWLYLPLALAADQWYDMQGVFSGSATCLPDGRIMMLYTGVTKEMVEMLS 120
Query: 221 LAYPADPSDPLLIKWVKYPGNPVLVPPPGIGAKDFRDPTTAWLTSEGKWRIAIGSRINRT 280
LAYPAD SDPLL++WVKYPGNP+L PPG+ +FRD +T W S G WRIAIG++ N T
Sbjct: 121 LAYPADLSDPLLVEWVKYPGNPILSAPPGVSPTEFRDASTGWYVSNGTWRIAIGAKYNTT 180
Query: 281 GITFVYDTKDFINYELLRGVLHGVPNTGMWECVDFYPVSTTGEHGLDTSHNGPGVKHVVK 340
GI VY+TKDF +++LL +LH VP+TG+WECVD YPVSTTGE GL+TS NGP VKHV+K
Sbjct: 181 GIAMVYETKDFKSFKLLEELLHAVPDTGLWECVDLYPVSTTGEKGLETSVNGPKVKHVLK 240
Query: 341 ASMDDDRHDYYAIGTYHEKNVTWVPDNPEIDVGIGIRYDYGLFYASKTFYDQNKKRRVLW 400
AS+D+ + DYYAIGTY W PDNPE DVGIG+RYD+G +YASKTFYD K+RRV+W
Sbjct: 241 ASIDEQQRDYYAIGTYDLGTNKWTPDNPEEDVGIGLRYDWGKYYASKTFYDPKKQRRVVW 300
Query: 401 GWIGESDSEIADVKKGWASLQGIPRTVALDTKTGSNLLQWPVEEVDSLRLTSKEFKKIEL 460
W E DSE+AD +KGWA++Q IPRTV LD KTG+N+L WPVEEV+SLRL+SKEF K++
Sbjct: 301 AWTKELDSEVADREKGWANVQTIPRTVLLDQKTGTNVLLWPVEEVESLRLSSKEFSKVKA 360
Query: 461 KPGSVMPLDVGSATQLDIVAEFELDKAALEKTAESNVEFSCSSSEGSAERGALGPFGLLV 520
GSV+PLDVG+ATQLDI+AEFE+DK ALE T E+++ ++C++S G+AERG LGPFGLLV
Sbjct: 361 GAGSVVPLDVGTATQLDIIAEFEIDKEALEGTIEADMGYNCTTSGGAAERGVLGPFGLLV 420
Query: 521 LADDSLSEQTPVYFYIAKGKDGSLKTYFCTDQSSTGRREILNESIGEHISCYCPNEHMYM 580
A ++LSEQTPVYFYIAKG DG+ KT+FC D+S + + +++ + E M
Sbjct: 421 SATENLSEQTPVYFYIAKGTDGNFKTFFCLDESRSSKASDVSKQVKGFTVPVLDGEKFTM 480
Query: 581 LALSIESSQSIWNIVYVYLQVDHSIVEGFAQGGRTTITSRVYPTKAIYGAARVFLFNNAT 640
L VDHSIVE FAQGGR+ ITSRVYPT+AIYGAA++FLFNNAT
Sbjct: 481 RLL-----------------VDHSIVESFAQGGRSCITSRVYPTEAIYGAAKLFLFNNAT 523
Query: 641 GASVTSSLKAWQMNSAFIRPY 661
GAS+T+SLK W+MNSAFI+P+
Sbjct: 524 GASITASLKIWEMNSAFIQPF 544
>pdb|2AC1|A Chain A, Crystal Structure Of A Cell-Wall Invertase From
Arabidopsis Thaliana
Length = 541
Score = 459 bits (1181), Expect = e-129, Method: Compositional matrix adjust.
Identities = 252/551 (45%), Positives = 335/551 (60%), Gaps = 30/551 (5%)
Query: 119 RTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPL 178
RT FHFQP KNWMNDPNGP+ YKG YHLFYQ+NP GA+WG+IVW H+ S DLI+W P
Sbjct: 9 RTGFHFQPPKNWMNDPNGPMIYKGIYHLFYQWNPKGAVWGNIVWAHSTSTDLINWDPHPP 68
Query: 179 AMVADQWYDIMGVWTGSATILPDGKLMMLYTGSTNESVQVQNLAYPADPSDPLLIKWVKY 238
A+ +DI G W+GSATILP+GK ++LYTG ++ QVQN+A P + SDP L +W K
Sbjct: 69 AIFPSAPFDINGCWSGSATILPNGKPVILYTGIDPKNQQVQNIAEPKNLSDPYLREWKKS 128
Query: 239 PGNPVLVPPP--GIGAKDFRDPTTAWLTSEGKWRIAIGSRINRTGITFVYDTKDFINYEL 296
P NP++ P GI A FRDPTTAWL + KWR+ IGS+I+R G+ Y +KDF+ +E
Sbjct: 129 PLNPLMAPDAVNGINASSFRDPTTAWLGQDKKWRVIIGSKIHRRGLAITYTSKDFLKWEK 188
Query: 297 LRGVLHGVPNTGMWECVDFYPVSTTGEHGLDTSHNGPG---VKHVVKASMDDDRHDYYAI 353
LH +GMWEC DF+PV+ G +G++TS G +KHV+K S+DD +HDYY I
Sbjct: 189 SPEPLHYDDGSGMWECPDFFPVTRFGSNGVETSSFGEPNEILKHVLKISLDDTKHDYYTI 248
Query: 354 GTYHEKNVTWVPDNPEIDVGIGIRYDYGLFYASKTFYDQNKKRRVLWGWIGESDSEIADV 413
GTY +VPDN G RYDYG +YASKTF+D K RR+LWGW ES S DV
Sbjct: 249 GTYDRVKDKFVPDNGFKMDGTAPRYDYGKYYASKTFFDSAKNRRILWGWTNESSSVEDDV 308
Query: 414 KKGWASLQGIPRTVALDTKTGSNLLQWPVEEVDSLRLTS-KEFKKIELKPGSVMPLDVGS 472
+KGW+ +Q IPR + LD ++G L+QWPV EV+ LR K + LK GS + + +
Sbjct: 309 EKGWSGIQTIPRKIWLD-RSGKQLIQWPVREVERLRTKQVKNLRNKVLKSGSRLEVYGVT 367
Query: 473 ATQLDIVAEF---ELDKAALEKTAESNVEFSCSSSEGSAERGALGPFGLLVLADDSLSEQ 529
A Q D+ F +L+KA + + + ++ + CS S + G LGPFGL+VLA +L E
Sbjct: 368 AAQADVEVLFKVRDLEKADVIEPSWTDPQLICSKMNVSVKSG-LGPFGLMVLASKNLEEY 426
Query: 530 TPVYFYIAKGKDGSLK--TYFCTDQSSTGRREILNESIGEHISCYCPNEHMYMLALSIES 587
T VYF I K + S K C+DQS + +E +++ P++ + + AL
Sbjct: 427 TSVYFRIFKARQNSNKYVVLMCSDQSRSSLKEDNDKTTYGAFVDINPHQPLSLRAL---- 482
Query: 588 SQSIWNIVYVYLQVDHSIVEGFAQGGRTTITSRVYPTKAIYGAARVFLFNNATGASVTSS 647
+DHS+VE F GR ITSRVYP AI ++ +F FN + +
Sbjct: 483 -------------IDHSVVESFGGKGRACITSRVYPKLAIGKSSHLFAFNYGYQSVDVLN 529
Query: 648 LKAWQMNSAFI 658
L AW MNSA I
Sbjct: 530 LNAWSMNSAQI 540
>pdb|2XQR|A Chain A, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|C Chain C, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|E Chain E, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|G Chain G, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|I Chain I, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|K Chain K, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
Length = 537
Score = 458 bits (1179), Expect = e-129, Method: Compositional matrix adjust.
Identities = 252/551 (45%), Positives = 335/551 (60%), Gaps = 30/551 (5%)
Query: 119 RTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPL 178
RT FHFQP KNWMNDPNGP+ YKG YHLFYQ+NP GA+WG+IVW H+ S DLI+W P
Sbjct: 5 RTGFHFQPPKNWMNDPNGPMIYKGIYHLFYQWNPKGAVWGNIVWAHSTSTDLINWDPHPP 64
Query: 179 AMVADQWYDIMGVWTGSATILPDGKLMMLYTGSTNESVQVQNLAYPADPSDPLLIKWVKY 238
A+ +DI G W+GSATILP+GK ++LYTG ++ QVQN+A P + SDP L +W K
Sbjct: 65 AIFPSAPFDINGCWSGSATILPNGKPVILYTGIDPKNQQVQNIAEPKNLSDPYLREWKKS 124
Query: 239 PGNPVLVPPP--GIGAKDFRDPTTAWLTSEGKWRIAIGSRINRTGITFVYDTKDFINYEL 296
P NP++ P GI A FRDPTTAWL + KWR+ IGS+I+R G+ Y +KDF+ +E
Sbjct: 125 PLNPLMAPDAVNGINASSFRDPTTAWLGQDKKWRVIIGSKIHRRGLAITYTSKDFLKWEK 184
Query: 297 LRGVLHGVPNTGMWECVDFYPVSTTGEHGLDTSHNGPG---VKHVVKASMDDDRHDYYAI 353
LH +GMWEC DF+PV+ G +G++TS G +KHV+K S+DD +HDYY I
Sbjct: 185 SPEPLHYDDGSGMWECPDFFPVTRFGSNGVETSSFGEPNEILKHVLKISLDDTKHDYYTI 244
Query: 354 GTYHEKNVTWVPDNPEIDVGIGIRYDYGLFYASKTFYDQNKKRRVLWGWIGESDSEIADV 413
GTY +VPDN G RYDYG +YASKTF+D K RR+LWGW ES S DV
Sbjct: 245 GTYDRVKDKFVPDNGFKMDGTAPRYDYGKYYASKTFFDSAKNRRILWGWTNESSSVEDDV 304
Query: 414 KKGWASLQGIPRTVALDTKTGSNLLQWPVEEVDSLRLTS-KEFKKIELKPGSVMPLDVGS 472
+KGW+ +Q IPR + LD ++G L+QWPV EV+ LR K + LK GS + + +
Sbjct: 305 EKGWSGIQTIPRKIWLD-RSGKQLIQWPVREVERLRTKQVKNLRNKVLKSGSRLEVYGVT 363
Query: 473 ATQLDIVAEF---ELDKAALEKTAESNVEFSCSSSEGSAERGALGPFGLLVLADDSLSEQ 529
A Q D+ F +L+KA + + + ++ + CS S + G LGPFGL+VLA +L E
Sbjct: 364 AAQADVEVLFKVRDLEKADVIEPSWTDPQLICSKMNVSVKSG-LGPFGLMVLASKNLEEY 422
Query: 530 TPVYFYIAKGKDGSLK--TYFCTDQSSTGRREILNESIGEHISCYCPNEHMYMLALSIES 587
T VYF I K + S K C+DQS + +E +++ P++ + + AL
Sbjct: 423 TSVYFRIFKARQNSNKYVVLMCSDQSRSSLKEDNDKTTYGAFVDINPHQPLSLRAL---- 478
Query: 588 SQSIWNIVYVYLQVDHSIVEGFAQGGRTTITSRVYPTKAIYGAARVFLFNNATGASVTSS 647
+DHS+VE F GR ITSRVYP AI ++ +F FN + +
Sbjct: 479 -------------IDHSVVESFGGKGRACITSRVYPKLAIGKSSHLFAFNYGYQSVDVLN 525
Query: 648 LKAWQMNSAFI 658
L AW MNSA I
Sbjct: 526 LNAWSMNSAQI 536
>pdb|2OXB|A Chain A, Crystal Structure Of A Cell-Wall Invertase (E203q) From
Arabidopsis Thaliana In Complex With Sucrose
Length = 537
Score = 457 bits (1177), Expect = e-129, Method: Compositional matrix adjust.
Identities = 251/551 (45%), Positives = 335/551 (60%), Gaps = 30/551 (5%)
Query: 119 RTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPL 178
RT FHFQP KNWMNDPNGP+ YKG YHLFYQ+NP GA+WG+IVW H+ S DLI+W P
Sbjct: 5 RTGFHFQPPKNWMNDPNGPMIYKGIYHLFYQWNPKGAVWGNIVWAHSTSTDLINWDPHPP 64
Query: 179 AMVADQWYDIMGVWTGSATILPDGKLMMLYTGSTNESVQVQNLAYPADPSDPLLIKWVKY 238
A+ +DI G W+GSATILP+GK ++LYTG ++ QVQN+A P + SDP L +W K
Sbjct: 65 AIFPSAPFDINGCWSGSATILPNGKPVILYTGIDPKNQQVQNIAEPKNLSDPYLREWKKS 124
Query: 239 PGNPVLVPPP--GIGAKDFRDPTTAWLTSEGKWRIAIGSRINRTGITFVYDTKDFINYEL 296
P NP++ P GI A FRDPTTAWL + KWR+ IGS+I+R G+ Y +KDF+ +E
Sbjct: 125 PLNPLMAPDAVNGINASSFRDPTTAWLGQDKKWRVIIGSKIHRRGLAITYTSKDFLKWEK 184
Query: 297 LRGVLHGVPNTGMWECVDFYPVSTTGEHGLDTSHNGPG---VKHVVKASMDDDRHDYYAI 353
LH +GMW+C DF+PV+ G +G++TS G +KHV+K S+DD +HDYY I
Sbjct: 185 SPEPLHYDDGSGMWQCPDFFPVTRFGSNGVETSSFGEPNEILKHVLKISLDDTKHDYYTI 244
Query: 354 GTYHEKNVTWVPDNPEIDVGIGIRYDYGLFYASKTFYDQNKKRRVLWGWIGESDSEIADV 413
GTY +VPDN G RYDYG +YASKTF+D K RR+LWGW ES S DV
Sbjct: 245 GTYDRVKDKFVPDNGFKMDGTAPRYDYGKYYASKTFFDSAKNRRILWGWTNESSSVEDDV 304
Query: 414 KKGWASLQGIPRTVALDTKTGSNLLQWPVEEVDSLRLTS-KEFKKIELKPGSVMPLDVGS 472
+KGW+ +Q IPR + LD ++G L+QWPV EV+ LR K + LK GS + + +
Sbjct: 305 EKGWSGIQTIPRKIWLD-RSGKQLIQWPVREVERLRTKQVKNLRNKVLKSGSRLEVYGVT 363
Query: 473 ATQLDIVAEF---ELDKAALEKTAESNVEFSCSSSEGSAERGALGPFGLLVLADDSLSEQ 529
A Q D+ F +L+KA + + + ++ + CS S + G LGPFGL+VLA +L E
Sbjct: 364 AAQADVEVLFKVRDLEKADVIEPSWTDPQLICSKMNVSVKSG-LGPFGLMVLASKNLEEY 422
Query: 530 TPVYFYIAKGKDGSLK--TYFCTDQSSTGRREILNESIGEHISCYCPNEHMYMLALSIES 587
T VYF I K + S K C+DQS + +E +++ P++ + + AL
Sbjct: 423 TSVYFRIFKARQNSNKYVVLMCSDQSRSSLKEDNDKTTYGAFVDINPHQPLSLRAL---- 478
Query: 588 SQSIWNIVYVYLQVDHSIVEGFAQGGRTTITSRVYPTKAIYGAARVFLFNNATGASVTSS 647
+DHS+VE F GR ITSRVYP AI ++ +F FN + +
Sbjct: 479 -------------IDHSVVESFGGKGRACITSRVYPKLAIGKSSHLFAFNYGYQSVDVLN 525
Query: 648 LKAWQMNSAFI 658
L AW MNSA I
Sbjct: 526 LNAWSMNSAQI 536
>pdb|2QQV|A Chain A, Crystal Structure Of A Cell-Wall Invertase (E203a) From
Arabidopsis Thaliana In Complex With Sucrose
Length = 537
Score = 456 bits (1173), Expect = e-128, Method: Compositional matrix adjust.
Identities = 251/551 (45%), Positives = 334/551 (60%), Gaps = 30/551 (5%)
Query: 119 RTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPL 178
RT FHFQP KNWMNDPNGP+ YKG YHLFYQ+NP GA+WG+IVW H+ S DLI+W P
Sbjct: 5 RTGFHFQPPKNWMNDPNGPMIYKGIYHLFYQWNPKGAVWGNIVWAHSTSTDLINWDPHPP 64
Query: 179 AMVADQWYDIMGVWTGSATILPDGKLMMLYTGSTNESVQVQNLAYPADPSDPLLIKWVKY 238
A+ +DI G W+GSATILP+GK ++LYTG ++ QVQN+A P + SDP L +W K
Sbjct: 65 AIFPSAPFDINGCWSGSATILPNGKPVILYTGIDPKNQQVQNIAEPKNLSDPYLREWKKS 124
Query: 239 PGNPVLVPPP--GIGAKDFRDPTTAWLTSEGKWRIAIGSRINRTGITFVYDTKDFINYEL 296
P NP++ P GI A FRDPTTAWL + KWR+ IGS+I+R G+ Y +KDF+ +E
Sbjct: 125 PLNPLMAPDAVNGINASSFRDPTTAWLGQDKKWRVIIGSKIHRRGLAITYTSKDFLKWEK 184
Query: 297 LRGVLHGVPNTGMWECVDFYPVSTTGEHGLDTSHNGPG---VKHVVKASMDDDRHDYYAI 353
LH +GMW C DF+PV+ G +G++TS G +KHV+K S+DD +HDYY I
Sbjct: 185 SPEPLHYDDGSGMWACPDFFPVTRFGSNGVETSSFGEPNEILKHVLKISLDDTKHDYYTI 244
Query: 354 GTYHEKNVTWVPDNPEIDVGIGIRYDYGLFYASKTFYDQNKKRRVLWGWIGESDSEIADV 413
GTY +VPDN G RYDYG +YASKTF+D K RR+LWGW ES S DV
Sbjct: 245 GTYDRVKDKFVPDNGFKMDGTAPRYDYGKYYASKTFFDSAKNRRILWGWTNESSSVEDDV 304
Query: 414 KKGWASLQGIPRTVALDTKTGSNLLQWPVEEVDSLRLTS-KEFKKIELKPGSVMPLDVGS 472
+KGW+ +Q IPR + LD ++G L+QWPV EV+ LR K + LK GS + + +
Sbjct: 305 EKGWSGIQTIPRKIWLD-RSGKQLIQWPVREVERLRTKQVKNLRNKVLKSGSRLEVYGVT 363
Query: 473 ATQLDIVAEF---ELDKAALEKTAESNVEFSCSSSEGSAERGALGPFGLLVLADDSLSEQ 529
A Q D+ F +L+KA + + + ++ + CS S + G LGPFGL+VLA +L E
Sbjct: 364 AAQADVEVLFKVRDLEKADVIEPSWTDPQLICSKMNVSVKSG-LGPFGLMVLASKNLEEY 422
Query: 530 TPVYFYIAKGKDGSLK--TYFCTDQSSTGRREILNESIGEHISCYCPNEHMYMLALSIES 587
T VYF I K + S K C+DQS + +E +++ P++ + + AL
Sbjct: 423 TSVYFRIFKARQNSNKYVVLMCSDQSRSSLKEDNDKTTYGAFVDINPHQPLSLRAL---- 478
Query: 588 SQSIWNIVYVYLQVDHSIVEGFAQGGRTTITSRVYPTKAIYGAARVFLFNNATGASVTSS 647
+DHS+VE F GR ITSRVYP AI ++ +F FN + +
Sbjct: 479 -------------IDHSVVESFGGKGRACITSRVYPKLAIGKSSHLFAFNYGYQSVDVLN 525
Query: 648 LKAWQMNSAFI 658
L AW MNSA I
Sbjct: 526 LNAWSMNSAQI 536
>pdb|2QQW|A Chain A, Crystal Structure Of A Cell-Wall Invertase (D23a) From
Arabidopsis Thaliana In Complex With Sucrose
Length = 537
Score = 456 bits (1172), Expect = e-128, Method: Compositional matrix adjust.
Identities = 251/551 (45%), Positives = 334/551 (60%), Gaps = 30/551 (5%)
Query: 119 RTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPL 178
RT FHFQP KNWMN PNGP+ YKG YHLFYQ+NP GA+WG+IVW H+ S DLI+W P
Sbjct: 5 RTGFHFQPPKNWMNAPNGPMIYKGIYHLFYQWNPKGAVWGNIVWAHSTSTDLINWDPHPP 64
Query: 179 AMVADQWYDIMGVWTGSATILPDGKLMMLYTGSTNESVQVQNLAYPADPSDPLLIKWVKY 238
A+ +DI G W+GSATILP+GK ++LYTG ++ QVQN+A P + SDP L +W K
Sbjct: 65 AIFPSAPFDINGCWSGSATILPNGKPVILYTGIDPKNQQVQNIAEPKNLSDPYLREWKKS 124
Query: 239 PGNPVLVPPP--GIGAKDFRDPTTAWLTSEGKWRIAIGSRINRTGITFVYDTKDFINYEL 296
P NP++ P GI A FRDPTTAWL + KWR+ IGS+I+R G+ Y +KDF+ +E
Sbjct: 125 PLNPLMAPDAVNGINASSFRDPTTAWLGQDKKWRVIIGSKIHRRGLAITYTSKDFLKWEK 184
Query: 297 LRGVLHGVPNTGMWECVDFYPVSTTGEHGLDTSHNGPG---VKHVVKASMDDDRHDYYAI 353
LH +GMWEC DF+PV+ G +G++TS G +KHV+K S+DD +HDYY I
Sbjct: 185 SPEPLHYDDGSGMWECPDFFPVTRFGSNGVETSSFGEPNEILKHVLKISLDDTKHDYYTI 244
Query: 354 GTYHEKNVTWVPDNPEIDVGIGIRYDYGLFYASKTFYDQNKKRRVLWGWIGESDSEIADV 413
GTY +VPDN G RYDYG +YASKTF+D K RR+LWGW ES S DV
Sbjct: 245 GTYDRVKDKFVPDNGFKMDGTAPRYDYGKYYASKTFFDSAKNRRILWGWTNESSSVEDDV 304
Query: 414 KKGWASLQGIPRTVALDTKTGSNLLQWPVEEVDSLRLTS-KEFKKIELKPGSVMPLDVGS 472
+KGW+ +Q IPR + LD ++G L+QWPV EV+ LR K + LK GS + + +
Sbjct: 305 EKGWSGIQTIPRKIWLD-RSGKQLIQWPVREVERLRTKQVKNLRNKVLKSGSRLEVYGVT 363
Query: 473 ATQLDIVAEF---ELDKAALEKTAESNVEFSCSSSEGSAERGALGPFGLLVLADDSLSEQ 529
A Q D+ F +L+KA + + + ++ + CS S + G LGPFGL+VLA +L E
Sbjct: 364 AAQADVEVLFKVRDLEKADVIEPSWTDPQLICSKMNVSVKSG-LGPFGLMVLASKNLEEY 422
Query: 530 TPVYFYIAKGKDGSLK--TYFCTDQSSTGRREILNESIGEHISCYCPNEHMYMLALSIES 587
T VYF I K + S K C+DQS + +E +++ P++ + + AL
Sbjct: 423 TSVYFRIFKARQNSNKYVVLMCSDQSRSSLKEDNDKTTYGAFVDINPHQPLSLRAL---- 478
Query: 588 SQSIWNIVYVYLQVDHSIVEGFAQGGRTTITSRVYPTKAIYGAARVFLFNNATGASVTSS 647
+DHS+VE F GR ITSRVYP AI ++ +F FN + +
Sbjct: 479 -------------IDHSVVESFGGKGRACITSRVYPKLAIGKSSHLFAFNYGYQSVDVLN 525
Query: 648 LKAWQMNSAFI 658
L AW MNSA I
Sbjct: 526 LNAWSMNSAQI 536
>pdb|2QQU|A Chain A, Crystal Structure Of A Cell-Wall Invertase (D239a) From
Arabidopsis Thaliana In Complex With Sucrose
Length = 535
Score = 455 bits (1170), Expect = e-128, Method: Compositional matrix adjust.
Identities = 250/549 (45%), Positives = 333/549 (60%), Gaps = 30/549 (5%)
Query: 119 RTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPL 178
RT FHFQP KNWMNDPNGP+ YKG YHLFYQ+NP GA+WG+IVW H+ S DLI+W P
Sbjct: 5 RTGFHFQPPKNWMNDPNGPMIYKGIYHLFYQWNPKGAVWGNIVWAHSTSTDLINWDPHPP 64
Query: 179 AMVADQWYDIMGVWTGSATILPDGKLMMLYTGSTNESVQVQNLAYPADPSDPLLIKWVKY 238
A+ +DI G W+GSATILP+GK ++LYTG ++ QVQN+A P + SDP L +W K
Sbjct: 65 AIFPSAPFDINGCWSGSATILPNGKPVILYTGIDPKNQQVQNIAEPKNLSDPYLREWKKS 124
Query: 239 PGNPVLVPPP--GIGAKDFRDPTTAWLTSEGKWRIAIGSRINRTGITFVYDTKDFINYEL 296
P NP++ P GI A FRDPTTAWL + KWR+ IGS+I+R G+ Y +KDF+ +E
Sbjct: 125 PLNPLMAPDAVNGINASSFRDPTTAWLGQDKKWRVIIGSKIHRRGLAITYTSKDFLKWEK 184
Query: 297 LRGVLHGVPNTGMWECVDFYPVSTTGEHGLDTSHNGPG---VKHVVKASMDDDRHDYYAI 353
LH +GMWEC DF+PV+ G +G++TS G +KHV+K S+ D +HDYY I
Sbjct: 185 SPEPLHYDDGSGMWECPDFFPVTRFGSNGVETSSFGEPNEILKHVLKISLADTKHDYYTI 244
Query: 354 GTYHEKNVTWVPDNPEIDVGIGIRYDYGLFYASKTFYDQNKKRRVLWGWIGESDSEIADV 413
GTY +VPDN G RYDYG +YASKTF+D K RR+LWGW ES S DV
Sbjct: 245 GTYDRVKDKFVPDNGFKMDGTAPRYDYGKYYASKTFFDSAKNRRILWGWTNESSSVEDDV 304
Query: 414 KKGWASLQGIPRTVALDTKTGSNLLQWPVEEVDSLRLTS-KEFKKIELKPGSVMPLDVGS 472
+KGW+ +Q IPR + LD ++G L+QWPV EV+ LR K + LK GS + + +
Sbjct: 305 EKGWSGIQTIPRKIWLD-RSGKQLIQWPVREVERLRTKQVKNLRNKVLKSGSRLEVYGVT 363
Query: 473 ATQLDIVAEF---ELDKAALEKTAESNVEFSCSSSEGSAERGALGPFGLLVLADDSLSEQ 529
A Q D+ F +L+KA + + + ++ + CS S + G LGPFGL+VLA +L E
Sbjct: 364 AAQADVEVLFKVRDLEKADVIEPSWTDPQLICSKMNVSVKSG-LGPFGLMVLASKNLEEY 422
Query: 530 TPVYFYIAKGKDGSLK--TYFCTDQSSTGRREILNESIGEHISCYCPNEHMYMLALSIES 587
T VYF I K + S K C+DQS + +E +++ P++ + + AL
Sbjct: 423 TSVYFRIFKARQNSNKYVVLMCSDQSRSSLKEDNDKTTYGAFVDINPHQPLSLRAL---- 478
Query: 588 SQSIWNIVYVYLQVDHSIVEGFAQGGRTTITSRVYPTKAIYGAARVFLFNNATGASVTSS 647
+DHS+VE F GR ITSRVYP AI ++ +F FN + +
Sbjct: 479 -------------IDHSVVESFGGKGRACITSRVYPKLAIGKSSHLFAFNYGYQSVDVLN 525
Query: 648 LKAWQMNSA 656
L AW MNSA
Sbjct: 526 LNAWSMNSA 534
>pdb|1ST8|A Chain A, Crystal Structure Of Fructan 1-Exohydrolase Iia From
Cichorium Intybus
pdb|2ADD|A Chain A, Crystal Structure Of Fructan 1-Exohydrolase Iia From
Cichorium Intybus In Complex With Sucrose
pdb|2ADE|A Chain A, Crystal Structure Of Fructan 1-Exohydrolase Iia From
Cichorium Intybus In Complex With Fructose
pdb|2AEY|A Chain A, Crystal Structure Of Fructan 1-Exohydrolase Iia From
Cichorium Intybus In Complex With 2,5
Dideoxy-2,5-Immino-D-Mannitol
Length = 543
Score = 454 bits (1169), Expect = e-128, Method: Compositional matrix adjust.
Identities = 238/545 (43%), Positives = 324/545 (59%), Gaps = 28/545 (5%)
Query: 119 RTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGD-IVWGHAVSKDLIHWYHLP 177
RT +HFQP NWMNDPNGP+ Y+G YH FYQYNP A +GD I+WGHAVS DL++W HL
Sbjct: 8 RTGYHFQPPSNWMNDPNGPMLYQGVYHFFYQYNPYAATFGDVIIWGHAVSYDLVNWIHLD 67
Query: 178 LAMVADQWYDIMGVWTGSATILPDGKLMMLYTGSTNESVQVQNLAYPADPSDPLLIKWVK 237
A+ Q D W+GSATILP MLYTGS ++S QVQ+LA+P + SDP L +WVK
Sbjct: 68 PAIYPTQEADSKSCWSGSATILPGNIPAMLYTGSDSKSRQVQDLAWPKNLSDPFLREWVK 127
Query: 238 YPGNPVLVPPPGIGAKDFRDPTTAWLTSEGKWRIAIGSRINRTGITFVYDTKDFINYELL 297
+P NP++ PP G+ FRDP+TAWL +G WRI +G + G+ F+Y + DF+N++
Sbjct: 128 HPKNPLITPPEGVKDDCFRDPSTAWLGPDGVWRIVVGGDRDNNGMAFLYQSTDFVNWKRY 187
Query: 298 RGVLHGVPNTGMWECVDFYPVSTTGEHGLDTSHNGPGVKHVVKASMDDDRHDYYAIGTYH 357
L TG WEC DFYPV +GLDTS G V+HV+KA + HD+Y IGTY
Sbjct: 188 DQPLSSADATGTWECPDFYPVPLNSTNGLDTSVYGGSVRHVMKAGFEG--HDWYTIGTYS 245
Query: 358 EKNVTWVPDNPEIDVG--IGIRYDYGLFYASKTFYDQNKKRRVLWGWIGESDSEIADVKK 415
++P N G + +RYDYG FYASK+F+D K RRVLW W+ E+DS+ D++K
Sbjct: 246 PDRENFLPQNGLSLTGSTLDLRYDYGQFYASKSFFDDAKNRRVLWAWVPETDSQADDIEK 305
Query: 416 GWASLQGIPRTVALDTKTGSNLLQWPVEEVDSLRLTSKEFKKIELKPGSVMPLDVGSATQ 475
GWA LQ PR + +D + G L+QWPVEE++ LR + LKPGSV+ + +A+Q
Sbjct: 306 GWAGLQSFPRALWID-RNGKQLIQWPVEEIEELRQNQVNLQNKNLKPGSVLEIHGIAASQ 364
Query: 476 LDIVAEFELD---KAALEKTAESNVEFSCSSSEGSAERGALGPFGLLVLADDSLSEQTPV 532
D+ F+L+ +A + T + + C + G++ RGALGPFGLL +A L EQ+ +
Sbjct: 365 ADVTISFKLEGLKEAEVLDTTLVDPQALC-NERGASSRGALGPFGLLAMASKDLKEQSAI 423
Query: 533 YFYIAKGKDGSLKTYFCTDQS-STGRREILNESIGEHISCYCPNEHMYMLALSIESSQSI 591
+F + + + G C+D S ST R I S G + +E + + L
Sbjct: 424 FFRVFQNQLGRYSVLMCSDLSRSTVRSNIDTTSYGAFVDIDPRSEEISLRNL-------- 475
Query: 592 WNIVYVYLQVDHSIVEGFAQGGRTTITSRVYPTKAIYGAARVFLFNNATGASVTSSLKAW 651
+DHSI+E F GG+T ITSR+YP A +F+FNN T S + AW
Sbjct: 476 ---------IDHSIIESFGAGGKTCITSRIYPKFVNNEEAHLFVFNNGTQNVKISEMSAW 526
Query: 652 QMNSA 656
M +A
Sbjct: 527 SMKNA 531
>pdb|2AEZ|A Chain A, Crystal Structure Of Fructan 1-Exohydrolase Iia (E201q)
From Cichorium Intybus In Complex With 1-Kestose
Length = 543
Score = 454 bits (1167), Expect = e-127, Method: Compositional matrix adjust.
Identities = 237/545 (43%), Positives = 324/545 (59%), Gaps = 28/545 (5%)
Query: 119 RTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGD-IVWGHAVSKDLIHWYHLP 177
RT +HFQP NWMNDPNGP+ Y+G YH FYQYNP A +GD I+WGHAVS DL++W HL
Sbjct: 8 RTGYHFQPPSNWMNDPNGPMLYQGVYHFFYQYNPYAATFGDVIIWGHAVSYDLVNWIHLD 67
Query: 178 LAMVADQWYDIMGVWTGSATILPDGKLMMLYTGSTNESVQVQNLAYPADPSDPLLIKWVK 237
A+ Q D W+GSATILP MLYTGS ++S QVQ+LA+P + SDP L +WVK
Sbjct: 68 PAIYPTQEADSKSCWSGSATILPGNIPAMLYTGSDSKSRQVQDLAWPKNLSDPFLREWVK 127
Query: 238 YPGNPVLVPPPGIGAKDFRDPTTAWLTSEGKWRIAIGSRINRTGITFVYDTKDFINYELL 297
+P NP++ PP G+ FRDP+TAWL +G WRI +G + G+ F+Y + DF+N++
Sbjct: 128 HPKNPLITPPEGVKDDCFRDPSTAWLGPDGVWRIVVGGDRDNNGMAFLYQSTDFVNWKRY 187
Query: 298 RGVLHGVPNTGMWECVDFYPVSTTGEHGLDTSHNGPGVKHVVKASMDDDRHDYYAIGTYH 357
L TG W+C DFYPV +GLDTS G V+HV+KA + HD+Y IGTY
Sbjct: 188 DQPLSSADATGTWQCPDFYPVPLNSTNGLDTSVYGGSVRHVMKAGFEG--HDWYTIGTYS 245
Query: 358 EKNVTWVPDNPEIDVG--IGIRYDYGLFYASKTFYDQNKKRRVLWGWIGESDSEIADVKK 415
++P N G + +RYDYG FYASK+F+D K RRVLW W+ E+DS+ D++K
Sbjct: 246 PDRENFLPQNGLSLTGSTLDLRYDYGQFYASKSFFDDAKNRRVLWAWVPETDSQADDIEK 305
Query: 416 GWASLQGIPRTVALDTKTGSNLLQWPVEEVDSLRLTSKEFKKIELKPGSVMPLDVGSATQ 475
GWA LQ PR + +D + G L+QWPVEE++ LR + LKPGSV+ + +A+Q
Sbjct: 306 GWAGLQSFPRALWID-RNGKQLIQWPVEEIEELRQNQVNLQNKNLKPGSVLEIHGIAASQ 364
Query: 476 LDIVAEFELD---KAALEKTAESNVEFSCSSSEGSAERGALGPFGLLVLADDSLSEQTPV 532
D+ F+L+ +A + T + + C + G++ RGALGPFGLL +A L EQ+ +
Sbjct: 365 ADVTISFKLEGLKEAEVLDTTLVDPQALC-NERGASSRGALGPFGLLAMASKDLKEQSAI 423
Query: 533 YFYIAKGKDGSLKTYFCTDQS-STGRREILNESIGEHISCYCPNEHMYMLALSIESSQSI 591
+F + + + G C+D S ST R I S G + +E + + L
Sbjct: 424 FFRVFQNQLGRYSVLMCSDLSRSTVRSNIDTTSYGAFVDIDPRSEEISLRNL-------- 475
Query: 592 WNIVYVYLQVDHSIVEGFAQGGRTTITSRVYPTKAIYGAARVFLFNNATGASVTSSLKAW 651
+DHSI+E F GG+T ITSR+YP A +F+FNN T S + AW
Sbjct: 476 ---------IDHSIIESFGAGGKTCITSRIYPKFVNNEEAHLFVFNNGTQNVKISEMSAW 526
Query: 652 QMNSA 656
M +A
Sbjct: 527 SMKNA 531
>pdb|1UYP|A Chain A, The Three-Dimensional Structure Of Beta-Fructosidase
(Invertase) From Thermotoga Maritima
pdb|1UYP|B Chain B, The Three-Dimensional Structure Of Beta-Fructosidase
(Invertase) From Thermotoga Maritima
pdb|1UYP|C Chain C, The Three-Dimensional Structure Of Beta-Fructosidase
(Invertase) From Thermotoga Maritima
pdb|1UYP|D Chain D, The Three-Dimensional Structure Of Beta-Fructosidase
(Invertase) From Thermotoga Maritima
pdb|1UYP|E Chain E, The Three-Dimensional Structure Of Beta-Fructosidase
(Invertase) From Thermotoga Maritima
pdb|1UYP|F Chain F, The Three-Dimensional Structure Of Beta-Fructosidase
(Invertase) From Thermotoga Maritima
Length = 432
Score = 154 bits (390), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 115/369 (31%), Positives = 174/369 (47%), Gaps = 52/369 (14%)
Query: 122 FHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMV 181
+HF P WMNDPNG +F+KG YH+FYQYNP WG+I WGHAVS DL+HW HLP+A+
Sbjct: 6 YHFFPITGWMNDPNGLIFWKGKYHMFYQYNPRKPEWGNICWGHAVSDDLVHWRHLPVALY 65
Query: 182 ADQWYDIMGVWTGSATILPDGKLMMLYT-----GSTNESVQVQNLAYPADPSDPLLIKWV 236
D + GV++GSA + DGK+ ++YT + Q + + D +V
Sbjct: 66 PDD--ETHGVFSGSA-VEKDGKMFLVYTYYRDPTHNKGEKETQCVVMSENGLD-----FV 117
Query: 237 KYPGNPVLVPPPGIGAKDFRDPTTAWLTSEGKWRIAIGS-RINRTGITFVYDTKDFINYE 295
KY GNPV+ PP G FRDP S G+WR+ +GS + + G +Y + D +++
Sbjct: 118 KYDGNPVISKPPEEGTHAFRDPKVN--RSNGEWRMVLGSGKDEKIGRVLLYTSDDLFHWK 175
Query: 296 LLRGVLHGVPNTGMWECVDFYPVSTTGEHGLDTSHNGPGVKHVVKASMDDDRHDYYAIGT 355
G + T EC D + G K ++ S+ +++G
Sbjct: 176 -YEGAIFEDETTKEIECPDLVRI---------------GEKDILIYSITSTNSVLFSMGE 219
Query: 356 YHEKNVTWVPDNPEIDVGIGIRYDYGLFYASKTFYDQNKKRRVLWGWIGE--SDSEIADV 413
E + V +D G FYA++TF+ + R V+ GW+
Sbjct: 220 LKEGKLN-VEKRGLLDHGTD-------FYAAQTFFGTD--RVVVIGWLQSWLRTGLYPTK 269
Query: 414 KKGWASLQGIPRTVALDTKTGSNLLQWPVEEVDSLRLTSKEFKKIELKPGSVMPLDVGSA 473
++GW + +PR + ++ + L PV+E+ +LR + K E LDV
Sbjct: 270 REGWNGVMSLPRELYVEN---NELKVKPVDELLALR----KRKVFETAKSGTFLLDV-KE 321
Query: 474 TQLDIVAEF 482
+IV EF
Sbjct: 322 NSYEIVCEF 330
>pdb|1W2T|A Chain A, Beta-Fructosidase From Thermotoga Maritima In Complex With
Raffinose
pdb|1W2T|B Chain B, Beta-Fructosidase From Thermotoga Maritima In Complex With
Raffinose
pdb|1W2T|C Chain C, Beta-Fructosidase From Thermotoga Maritima In Complex With
Raffinose
pdb|1W2T|D Chain D, Beta-Fructosidase From Thermotoga Maritima In Complex With
Raffinose
pdb|1W2T|E Chain E, Beta-Fructosidase From Thermotoga Maritima In Complex With
Raffinose
pdb|1W2T|F Chain F, Beta-Fructosidase From Thermotoga Maritima In Complex With
Raffinose
Length = 432
Score = 152 bits (385), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 114/369 (30%), Positives = 174/369 (47%), Gaps = 52/369 (14%)
Query: 122 FHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMV 181
+HF P WMNDPNG +F+KG YH+FYQYNP WG+I WGHAVS DL+HW HLP+A+
Sbjct: 6 YHFFPITGWMNDPNGLIFWKGKYHMFYQYNPRKPEWGNICWGHAVSDDLVHWRHLPVALY 65
Query: 182 ADQWYDIMGVWTGSATILPDGKLMMLYT-----GSTNESVQVQNLAYPADPSDPLLIKWV 236
D + GV++GSA + DGK+ ++YT + Q + + D +V
Sbjct: 66 PDD--ETHGVFSGSA-VEKDGKMFLVYTYYRDPTHNKGEKETQCVVMSENGLD-----FV 117
Query: 237 KYPGNPVLVPPPGIGAKDFRDPTTAWLTSEGKWRIAIGS-RINRTGITFVYDTKDFINYE 295
KY GNPV+ PP G FRDP S G+WR+ +GS + + G +Y + D +++
Sbjct: 118 KYDGNPVISKPPEEGTHAFRDPKVN--RSNGEWRMVLGSGKDEKIGRVLLYTSDDLFHWK 175
Query: 296 LLRGVLHGVPNTGMWECVDFYPVSTTGEHGLDTSHNGPGVKHVVKASMDDDRHDYYAIGT 355
G + T +C D + G K ++ S+ +++G
Sbjct: 176 -YEGAIFEDETTKEIDCPDLVRI---------------GEKDILIYSITSTNSVLFSMGE 219
Query: 356 YHEKNVTWVPDNPEIDVGIGIRYDYGLFYASKTFYDQNKKRRVLWGWIGE--SDSEIADV 413
E + V +D G FYA++TF+ + R V+ GW+
Sbjct: 220 LKEGKLN-VEKRGLLDHGTD-------FYAAQTFFGTD--RVVVIGWLQSWLRTGLYPTK 269
Query: 414 KKGWASLQGIPRTVALDTKTGSNLLQWPVEEVDSLRLTSKEFKKIELKPGSVMPLDVGSA 473
++GW + +PR + ++ + L PV+E+ +LR + K E LDV
Sbjct: 270 REGWNGVMSLPRELYVEN---NELKVKPVDELLALR----KRKVFETAKSGTFLLDV-KE 321
Query: 474 TQLDIVAEF 482
+IV EF
Sbjct: 322 NSYEIVCEF 330
>pdb|1Y9M|A Chain A, Crystal Structure Of Exo-Inulinase From Aspergillus
Awamori In Spacegroup P212121
pdb|1Y9G|A Chain A, Crystal Structure Of Exo-Inulinase From Aspergillus
Awamori Complexed With Fructose
pdb|1Y4W|A Chain A, Crystal Structure Of Exo-Inulinase From Aspergillus
Awamori In Spacegroup P21
Length = 518
Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 146/549 (26%), Positives = 231/549 (42%), Gaps = 111/549 (20%)
Query: 119 RTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPL 178
R +HF PQKNWMNDPNG +++ G YHLF+QYNP G WG+I WGHA+S+DL HW P+
Sbjct: 8 RGQYHFSPQKNWMNDPNGLLYHNGTYHLFFQYNPGGIEWGNISWGHAISEDLTHWEEKPV 67
Query: 179 AMVADQW-YDIMGVW-TGSAT--------ILPDGK--LMMLYTG------------STNE 214
A++A + D+ ++ +GSA DGK L+ +YT + E
Sbjct: 68 ALLARGFGSDVTEMYFSGSAVADVNNTSGFGKDGKTPLVAMYTSYYPVAQTLPSGQTVQE 127
Query: 215 SVQVQNLAYPADPSDPLLIKWVKY-PGNPVLVPPPG---IGAKDFRDPTTAWLTSEGKWR 270
Q Q++AY D + W Y NPV+ PP ++FRDP W KW
Sbjct: 128 DQQSQSIAYSLDDG----LTWTTYDAANPVIPNPPSPYEAEYQNFRDPFVFWHDESQKWV 183
Query: 271 IAIGSRINRTGITFVYDTKDFINYELLRGVLHGVPNTGMWECVDFYPVSTTGEHGLDTSH 330
+ + I +Y + + +++L+ G+WEC + LD+
Sbjct: 184 VV--TSIAELHKLAIYTSDNLKDWKLVSEFGPYNAQGGVWECPGLVKLP------LDS-- 233
Query: 331 NGPGVKHVVKASMDD-------DRHDYYAIGTYHEKNVTWVPDNPEIDVGIGIR--YDYG 381
G K V+ + ++ Y +G + T+ PD + G D+G
Sbjct: 234 -GNSTKWVITSGLNPGGPPGTVGSGTQYFVGEF--DGTTFTPDADTVYPGNSTANWMDWG 290
Query: 382 L-FYASKTFYDQNKKRRVLWGWIGESDSEIADVKKGWASLQGIPRTVALDT-KTGSNLLQ 439
FYA+ + + V GW+ W S IPR +AL T + + L+Q
Sbjct: 291 PDFYAAAGYNGLSLNDHVHIGWMNNWQYGANIPTYPWRSAMAIPRHMALKTIGSKATLVQ 350
Query: 440 WPVEEVDSLR----LTSKEFKKIELKPGSVMPLDVGSATQLDIVAEFELDKAALEKTAES 495
P E S+ + S+ FK L GS F++D
Sbjct: 351 QPQEAWSSISNKRPIYSRTFKT----------LSEGSTNTTTTGETFKVD---------- 390
Query: 496 NVEFSCSSSEGSAERGALGPFGLLVLADDSLSEQTPVYFYIAKGKDGSLKTYFCTDQSST 555
+ FS S + F + + A + +EQT V + AK + D++ +
Sbjct: 391 -LSFSAKSKAST--------FAIALRASANFTEQTLVGYDFAKQQ-------IFLDRTHS 434
Query: 556 GRREILNESIGEHISCYCPNEHMYMLALSIESSQSIWNIVYVYLQVDHSIVEGFAQGGRT 615
G + S E + +Y L+ +S+ +V + + VD S VE F G T
Sbjct: 435 G-----DVSFDETFAS------VYHGPLTPDST----GVVKLSIFVDRSSVEVFGGQGET 479
Query: 616 TITSRVYPT 624
T+T++++P+
Sbjct: 480 TLTAQIFPS 488
>pdb|3PIG|A Chain A, Beta-Fructofuranosidase From Bifidobacterium Longum
pdb|3PIG|B Chain B, Beta-Fructofuranosidase From Bifidobacterium Longum
pdb|3PIJ|A Chain A, Beta-Fructofuranosidase From Bifidobacterium Longum -
Complex With Fructose
pdb|3PIJ|B Chain B, Beta-Fructofuranosidase From Bifidobacterium Longum -
Complex With Fructose
Length = 526
Score = 113 bits (282), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 115/450 (25%), Positives = 192/450 (42%), Gaps = 69/450 (15%)
Query: 87 SASSAGVSEKSNRRFGSRTASYPWTNNMLSWQRTAFHFQPQKNWMNDPNGPVFYKGWYHL 146
+ + AGV+E + +R YP +H W+NDPNG FYKG +H+
Sbjct: 22 AKAEAGVAEMAAKR---NNRWYP-----------KYHIASNGGWINDPNGLCFYKGRWHV 67
Query: 147 FYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILPDGKLMM 206
FYQ +P G WG + WGH S D+++W P+ + GV++GSA I +G L
Sbjct: 68 FYQLHPYGTQWGPMHWGHVSSTDMLNWKREPIMFAPSLEQEKDGVFSGSAVIDDNGDLRF 127
Query: 207 LYTG--------STNESVQVQNLAYPADPSDPLLIKWVKYPGNPVLVPPPGIGAKDFRDP 258
YTG +T QVQ A P + K G + P + +RDP
Sbjct: 128 YYTGHRWANGHDNTGGDWQVQMTALPDNDELTSATK----QGMIIDCPTDKVDHH-YRDP 182
Query: 259 TTAWLTSEGKWRIAIG-SRINRTGITFVYDTKDFINYELLRGVL-HGVPNTGMWECVDFY 316
W T + W + G S ++ G +++ +KD + +E R + H P+ M EC DF
Sbjct: 183 KV-WKTGD-TWYMTFGVSSADKRGQMWLFSSKDMVRWEYERVLFQHPDPDVFMLECPDFS 240
Query: 317 PVS--------TTGEHGLDTSHNGPGVKHVVKASMDDDRHDYYAIGTYHEKNVTWVPD-- 366
P+ G + + +G ++V A Y IG TW P
Sbjct: 241 PIKDKDGNEKWVIGFSAMGSKPSGFMNRNVSNAG--------YMIG-------TWEPGGE 285
Query: 367 -NPEIDVGIGIRYDYGL-FYASKTFYDQNKKRRVLWGWIGESDSEIADVKKGWASLQGIP 424
PE + + +D G +YA ++F R++++GW+ I GW +P
Sbjct: 286 FKPETEFRL---WDCGHNYYAPQSF--NVDGRQIVYGWMSPFVQPIPMEDDGWCGQLTLP 340
Query: 425 RTVALDTKTGSNLLQWPVEEVDSLRLTSKEFKKIELK-PGSVMPLDVGSATQLDI---VA 480
R + L +++ PV E++ LR + + + L G + D A ++++ +A
Sbjct: 341 REITLGDD--GDVVTAPVAEMEGLREDTLDHGSVTLDMDGEQIIADDAEAVEIEMTIDLA 398
Query: 481 EFELDKAALEKTAESNVEFSCSSSEGSAER 510
++A L+ A + ++ + +G R
Sbjct: 399 ASTAERAGLKIHATEDGAYTYVAYDGQIGR 428
>pdb|3SC7|X Chain X, First Crystal Structure Of An Endo-Inulinase, From
Aspergillus Ficuum: Structural Analysis And Comparison
With Other Gh32 Enzymes.
pdb|3RWK|X Chain X, First Crystal Structure Of An Endo-Inulinase, From
Aspergillus Ficuum: Structural Analysis And Comparison
With Other Gh32 Enzymes
Length = 516
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 107/405 (26%), Positives = 179/405 (44%), Gaps = 56/405 (13%)
Query: 119 RTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPL 178
R ++HF P + WMN+PNG + +HLF+Q+NP +WG+I WGHA S DL+HW H P
Sbjct: 29 RPSYHFTPDQYWMNEPNGLIKIGSTWHLFFQHNPTANVWGNICWGHATSTDLMHWAHKPT 88
Query: 179 AMVADQWYDIMGVWTGSATILPDGK----------LMMLYTG-STNESVQVQNLAYPADP 227
A +AD+ + + +TG+A P+ + +TG +T+ Q Q LA+ D
Sbjct: 89 A-IADE--NGVEAFTGTAYYDPNNTSGLGDSANPPYLAWFTGYTTSSQTQDQRLAFSVDN 145
Query: 228 SDPLLIKWVKYPGNPVL-----VPPPGIGAKDFRDPTTAWLTSEGKWRIAIGSRINRTGI 282
W K+ GNP++ P G + RDP + G W I + + + +
Sbjct: 146 G----ATWTKFQGNPIISTSQEAPHDITGGLESRDPKVFFHRQSGNW-IMVLAHGGQDKL 200
Query: 283 TFVYDTKDFINY----ELLRGVLHGVPN--TGMWECVDFY--PVSTTGEHG----LDTSH 330
+F + + D IN+ +L ++G+ + TG WE D + PV T E + +
Sbjct: 201 SF-WTSADTINWTWQSDLKSTSINGLSSDITG-WEVPDMFELPVEGTEETTWVVMMTPAE 258
Query: 331 NGPGVKHVVKASMDDDRHDYYAIGTYHEKNVTWVP-DNPEIDVGIGIRYDYGLFYASKTF 389
P + V A G++ K+ T P D + + G +D L + +
Sbjct: 259 GSPAGGNGVLA----------ITGSFDGKSFTADPVDASTMWLDNGRDFDGALSWVNVPA 308
Query: 390 YDQNKKRRVLWGWIGESDSEIADVKKGWASLQGIPRTVAL-DTKTGSNLLQWPVEEVDSL 448
D RR++ + S W + PRT++L T + +Q P+ E+D++
Sbjct: 309 SD---GRRIIAAVMNSYGSNPPTTT--WKGMLSFPRTLSLKKVGTQQHFVQQPITELDTI 363
Query: 449 RLTSKEFKKIELKPGSVMPLDVGSATQLDIVAEFELDKAALEKTA 493
+ + + PG + L T LD+ F D ++ A
Sbjct: 364 STSLQILANQTITPGQTL-LSSIRGTALDVRVAFYPDAGSVLSLA 407
>pdb|3KF5|A Chain A, Structure Of Invertase From Schwanniomyces Occidentalis
pdb|3KF5|B Chain B, Structure Of Invertase From Schwanniomyces Occidentalis
Length = 512
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 92/175 (52%), Gaps = 31/175 (17%)
Query: 117 WQRTAFHFQPQKNWMNDPNGPVFY----KGWYHLFYQYNPNGAIWGD-IVWGHAVSKDLI 171
+ R HF P+K WMNDPNG +FY K W HL++QYNPN WG + WGHA S DL+
Sbjct: 11 YNRPLIHFTPEKGWMNDPNG-LFYDKTAKLW-HLYFQYNPNATAWGQPLYWGHATSNDLV 68
Query: 172 HWYHLPLAMVADQWYDIMGVWTGS-------------ATILPDGKLMMLYTGSTNESVQV 218
HW +A+ + +D G+++GS ++I P+ +++ +YT + ++ Q
Sbjct: 69 HWDEHEIAIGPE--HDNEGIFSGSIVVDHNNTSGFFNSSIDPNQRIVAIYTNNIPDN-QT 125
Query: 219 QNLAYPADPSDPLLIKWVKYPGNPVLVPPPGIGAKDFRDPTTAWLTSEGKWRIAI 273
Q++A+ D + KY NPV+ + + FRDP W +W + +
Sbjct: 126 QDIAFSLDGG----YTFTKYENNPVI----DVSSNQFRDPKVFWHEDSNQWIMVV 172
>pdb|3KF3|A Chain A, Structure Of Fructofuranosidase From Schwanniomyces
Occidentalis Complexed With Fructose
pdb|3KF3|B Chain B, Structure Of Fructofuranosidase From Schwanniomyces
Occidentalis Complexed With Fructose
Length = 509
Score = 96.3 bits (238), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 92/175 (52%), Gaps = 31/175 (17%)
Query: 117 WQRTAFHFQPQKNWMNDPNGPVFY----KGWYHLFYQYNPNGAIWGD-IVWGHAVSKDLI 171
+ R HF P+K WMNDPNG +FY K W HL++QYNPN WG + WGHA S DL+
Sbjct: 8 YNRPLIHFTPEKGWMNDPNG-LFYDKTAKLW-HLYFQYNPNATAWGQPLYWGHATSNDLV 65
Query: 172 HWYHLPLAMVADQWYDIMGVWTGS-------------ATILPDGKLMMLYTGSTNESVQV 218
HW +A+ + +D G+++GS ++I P+ +++ +YT + ++ Q
Sbjct: 66 HWDEHEIAIGPE--HDNEGIFSGSIVVDHNNTSGFFNSSIDPNQRIVAIYTNNIPDN-QT 122
Query: 219 QNLAYPADPSDPLLIKWVKYPGNPVLVPPPGIGAKDFRDPTTAWLTSEGKWRIAI 273
Q++A+ D + KY NPV+ + + FRDP W +W + +
Sbjct: 123 QDIAFSLDGG----YTFTKYENNPVI----DVSSNQFRDPKVFWHEDSNQWIMVV 169
>pdb|3U75|A Chain A, Structure Of E230a-Fructofuranosidase From Schwanniomyces
Occidentalis Complexed With Fructosylnystose
pdb|3U75|B Chain B, Structure Of E230a-Fructofuranosidase From Schwanniomyces
Occidentalis Complexed With Fructosylnystose
pdb|3U75|C Chain C, Structure Of E230a-Fructofuranosidase From Schwanniomyces
Occidentalis Complexed With Fructosylnystose
pdb|3U75|D Chain D, Structure Of E230a-Fructofuranosidase From Schwanniomyces
Occidentalis Complexed With Fructosylnystose
Length = 535
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 92/175 (52%), Gaps = 31/175 (17%)
Query: 117 WQRTAFHFQPQKNWMNDPNGPVFY----KGWYHLFYQYNPNGAIWGD-IVWGHAVSKDLI 171
+ R HF P+K WMNDPNG +FY K W HL++QYNPN WG + WGHA S DL+
Sbjct: 34 YNRPLIHFTPEKGWMNDPNG-LFYDKTAKLW-HLYFQYNPNATAWGQPLYWGHATSNDLV 91
Query: 172 HWYHLPLAMVADQWYDIMGVWTGS-------------ATILPDGKLMMLYTGSTNESVQV 218
HW +A+ + +D G+++GS ++I P+ +++ +YT + ++ Q
Sbjct: 92 HWDEHEIAIGPE--HDNEGIFSGSIVVDHNNTSGFFNSSIDPNQRIVAIYTNNIPDN-QT 148
Query: 219 QNLAYPADPSDPLLIKWVKYPGNPVLVPPPGIGAKDFRDPTTAWLTSEGKWRIAI 273
Q++A+ D + KY NPV+ + + FRDP W +W + +
Sbjct: 149 QDIAFSLDGG----YTFTKYENNPVI----DVSSNQFRDPKVFWHEDSNQWIMVV 195
>pdb|3U14|A Chain A, Structure Of D50a-Fructofuranosidase From Schwanniomyces
Occidentalis Complexed With Inulin
pdb|3U14|B Chain B, Structure Of D50a-Fructofuranosidase From Schwanniomyces
Occidentalis Complexed With Inulin
Length = 535
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 91/175 (52%), Gaps = 31/175 (17%)
Query: 117 WQRTAFHFQPQKNWMNDPNGPVFY----KGWYHLFYQYNPNGAIWGD-IVWGHAVSKDLI 171
+ R HF P+K WMN PNG +FY K W HL++QYNPN WG + WGHA S DL+
Sbjct: 34 YNRPLIHFTPEKGWMNAPNG-LFYDKTAKLW-HLYFQYNPNATAWGQPLYWGHATSNDLV 91
Query: 172 HWYHLPLAMVADQWYDIMGVWTGS-------------ATILPDGKLMMLYTGSTNESVQV 218
HW +A+ + +D G+++GS ++I P+ +++ +YT + ++ Q
Sbjct: 92 HWDEHEIAIGPE--HDNEGIFSGSIVVDHNNTSGFFNSSIDPNQRIVAIYTNNIPDN-QT 148
Query: 219 QNLAYPADPSDPLLIKWVKYPGNPVLVPPPGIGAKDFRDPTTAWLTSEGKWRIAI 273
Q++A+ D + KY NPV+ + + FRDP W +W + +
Sbjct: 149 QDIAFSLDGG----YTFTKYENNPVI----DVSSNQFRDPKVFWHEDSNQWIMVV 195
>pdb|4FFG|A Chain A, Crystal Structure Of Levan Fructotransferase From
Arthrobacter Ureafaciens In Complex With Dfa-Iv
pdb|4FFG|B Chain B, Crystal Structure Of Levan Fructotransferase From
Arthrobacter Ureafaciens In Complex With Dfa-Iv
pdb|4FFG|C Chain C, Crystal Structure Of Levan Fructotransferase From
Arthrobacter Ureafaciens In Complex With Dfa-Iv
pdb|4FFG|D Chain D, Crystal Structure Of Levan Fructotransferase From
Arthrobacter Ureafaciens In Complex With Dfa-Iv
Length = 492
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 107/436 (24%), Positives = 159/436 (36%), Gaps = 67/436 (15%)
Query: 122 FHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMV 181
+H P W+ DP PV G Y L+Y ++ G W HA + D + + H M
Sbjct: 4 YHMTPPSGWLCDPQRPVTTHGAYQLYYLHSDQNN--GPGGWDHASTTDGVAFTHHGTVMP 61
Query: 182 ADQWYDIMGVWTGSATI-------LPDGKLMMLYTGSTN--ESVQVQNLAYPADPS---- 228
VW+GSA + G ++ L T T+ Q Q L + D
Sbjct: 62 LRP---DFPVWSGSAVVDTANTAGFGAGAVVALATQPTDGVRKYQEQYLYWSTDGGFTFT 118
Query: 229 ---DPLLIKWVKYPGNPVLVPPPGIGAKDFRDPTTAWLTSEGKWRIAIGSRINRTGITFV 285
DP++ V G P A+ FRDP W T+ G+W IG R
Sbjct: 119 ALPDPVI---VNTDGRAATTPAEIENAEWFRDPKIHWDTARGEWVCVIG----RLRYAAF 171
Query: 286 YDTKDFINYELLRGVLHGVPNTGMWECVDFYPVSTTGEHGLDTSHNGPGVKH-VVKASMD 344
Y + + ++ L R + G EC D + ++ G +H V+ ASM
Sbjct: 172 YTSPNLRDWTLRRNFDYPNHALGGIECPDLFEITADD-----------GTRHWVLAASM- 219
Query: 345 DDRHDYYAIG---TYHEKNVTWVPDNPEIDVGIGIRYDYGL-FYASKTF--YDQNKKRRV 398
D Y IG TY TW + D D+G +YA+ T+ D + +R+
Sbjct: 220 ----DAYGIGLPMTYAYWTGTWDGEQFHADDLTPQWLDWGWDWYAAVTWPSIDAPETKRL 275
Query: 399 LWGWIGESDSEIADV----KKGWASLQGIPRTVALDTKTGS--NLLQWPVEEVDSLRLTS 452
W+ DV G+ I R + L + G LL PV + + +
Sbjct: 276 AIAWMNNWKYAARDVPTDASDGYNGQNSIVRELRLARQPGGWYTLLSTPVAALTNYVTAT 335
Query: 453 KEFKKIELKPGSVMPLDVGSATQLDIVAEFELDKAALEKTAESNVEFSCSSSEGSAERGA 512
+ +V+P + G A E ELD A T NV S S
Sbjct: 336 TTLPDRTVDGSAVLPWN-GRAY------EIELDIAWDTAT---NVGISVGRSPDGTRHTN 385
Query: 513 LGPFGLLVLADDSLSE 528
+G +G + D S+
Sbjct: 386 IGKYGADLYVDRGPSD 401
>pdb|4FFF|A Chain A, Crystal Structure Of Levan Fructotransferase From
Arthrobacter Ureafaciens
pdb|4FFF|B Chain B, Crystal Structure Of Levan Fructotransferase From
Arthrobacter Ureafaciens
pdb|4FFF|C Chain C, Crystal Structure Of Levan Fructotransferase From
Arthrobacter Ureafaciens
pdb|4FFF|D Chain D, Crystal Structure Of Levan Fructotransferase From
Arthrobacter Ureafaciens
Length = 490
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 107/436 (24%), Positives = 159/436 (36%), Gaps = 67/436 (15%)
Query: 122 FHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMV 181
+H P W+ DP PV G Y L+Y ++ G W HA + D + + H M
Sbjct: 4 YHMTPPSGWLCDPQRPVTTHGAYQLYYLHSDQNN--GPGGWDHASTTDGVAFTHHGTVMP 61
Query: 182 ADQWYDIMGVWTGSATI-------LPDGKLMMLYTGSTN--ESVQVQNLAYPADPS---- 228
VW+GSA + G ++ L T T+ Q Q L + D
Sbjct: 62 LRP---DFPVWSGSAVVDTANTAGFGAGAVVALATQPTDGVRKYQEQYLYWSTDGGFTFT 118
Query: 229 ---DPLLIKWVKYPGNPVLVPPPGIGAKDFRDPTTAWLTSEGKWRIAIGSRINRTGITFV 285
DP++ V G P A+ FRDP W T+ G+W IG R
Sbjct: 119 ALPDPVI---VNTDGRAATTPAEIENAEWFRDPKIHWDTARGEWVCVIG----RLRYAAF 171
Query: 286 YDTKDFINYELLRGVLHGVPNTGMWECVDFYPVSTTGEHGLDTSHNGPGVKH-VVKASMD 344
Y + + ++ L R + G EC D + ++ G +H V+ ASM
Sbjct: 172 YTSPNLRDWTLRRNFDYPNHALGGIECPDLFEITADD-----------GTRHWVLAASM- 219
Query: 345 DDRHDYYAIG---TYHEKNVTWVPDNPEIDVGIGIRYDYGL-FYASKTF--YDQNKKRRV 398
D Y IG TY TW + D D+G +YA+ T+ D + +R+
Sbjct: 220 ----DAYGIGLPMTYAYWTGTWDGEQFHADDLTPQWLDWGWDWYAAVTWPSIDAPETKRL 275
Query: 399 LWGWIGESDSEIADV----KKGWASLQGIPRTVALDTKTGS--NLLQWPVEEVDSLRLTS 452
W+ DV G+ I R + L + G LL PV + + +
Sbjct: 276 AIAWMNNWKYAARDVPTDASDGYNGQNSIVRELRLARQPGGWYTLLSTPVAALTNYVTAT 335
Query: 453 KEFKKIELKPGSVMPLDVGSATQLDIVAEFELDKAALEKTAESNVEFSCSSSEGSAERGA 512
+ +V+P + G A E ELD A T NV S S
Sbjct: 336 TTLPDRTVDGSAVLPWN-GRAY------EIELDIAWDTAT---NVGISVGRSPDGTRHTN 385
Query: 513 LGPFGLLVLADDSLSE 528
+G +G + D S+
Sbjct: 386 IGKYGADLYVDRGPSD 401
>pdb|4FFH|A Chain A, Crystal Structure Of Levan Fructotransferase D54n Mutant
From Arthrobacter Ureafaciens In Complex With Sucrose
pdb|4FFH|B Chain B, Crystal Structure Of Levan Fructotransferase D54n Mutant
From Arthrobacter Ureafaciens In Complex With Sucrose
pdb|4FFH|C Chain C, Crystal Structure Of Levan Fructotransferase D54n Mutant
From Arthrobacter Ureafaciens In Complex With Sucrose
pdb|4FFH|D Chain D, Crystal Structure Of Levan Fructotransferase D54n Mutant
From Arthrobacter Ureafaciens In Complex With Sucrose
pdb|4FFI|A Chain A, Crystal Structure Of Levan Fructotransferase D54n Mutant
From Arthrobacter Ureafaciens In Complex With Levanbiose
pdb|4FFI|B Chain B, Crystal Structure Of Levan Fructotransferase D54n Mutant
From Arthrobacter Ureafaciens In Complex With Levanbiose
pdb|4FFI|C Chain C, Crystal Structure Of Levan Fructotransferase D54n Mutant
From Arthrobacter Ureafaciens In Complex With Levanbiose
pdb|4FFI|D Chain D, Crystal Structure Of Levan Fructotransferase D54n Mutant
From Arthrobacter Ureafaciens In Complex With Levanbiose
Length = 492
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 106/436 (24%), Positives = 159/436 (36%), Gaps = 67/436 (15%)
Query: 122 FHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMV 181
+H P W+ +P PV G Y L+Y ++ G W HA + D + + H M
Sbjct: 4 YHMTPPSGWLCNPQRPVTTHGAYQLYYLHSDQNN--GPGGWDHASTTDGVAFTHHGTVMP 61
Query: 182 ADQWYDIMGVWTGSATI-------LPDGKLMMLYTGSTN--ESVQVQNLAYPADPS---- 228
VW+GSA + G ++ L T T+ Q Q L + D
Sbjct: 62 LRP---DFPVWSGSAVVDTANTAGFGAGAVVALATQPTDGVRKYQEQYLYWSTDGGFTFT 118
Query: 229 ---DPLLIKWVKYPGNPVLVPPPGIGAKDFRDPTTAWLTSEGKWRIAIGSRINRTGITFV 285
DP++ V G P A+ FRDP W T+ G+W IG R
Sbjct: 119 ALPDPVI---VNTDGRAATTPAEIENAEWFRDPKIHWDTARGEWVCVIG----RLRYAAF 171
Query: 286 YDTKDFINYELLRGVLHGVPNTGMWECVDFYPVSTTGEHGLDTSHNGPGVKH-VVKASMD 344
Y + + ++ L R + G EC D + ++ G +H V+ ASMD
Sbjct: 172 YTSPNLRDWTLRRNFDYPNHALGGIECPDLFEITADD-----------GTRHWVLAASMD 220
Query: 345 DDRHDYYAIG---TYHEKNVTWVPDNPEIDVGIGIRYDYGL-FYASKTF--YDQNKKRRV 398
Y IG TY TW + D D+G +YA+ T+ D + +R+
Sbjct: 221 A-----YGIGLPMTYAYWTGTWDGEQFHADDLTPQWLDWGWDWYAAVTWPSIDAPETKRL 275
Query: 399 LWGWIGESDSEIADV----KKGWASLQGIPRTVALDTKTGS--NLLQWPVEEVDSLRLTS 452
W+ DV G+ I R + L + G LL PV + + +
Sbjct: 276 AIAWMNNWKYAARDVPTDASDGYNGQNSIVRELRLARQPGGWYTLLSTPVAALTNYVTAT 335
Query: 453 KEFKKIELKPGSVMPLDVGSATQLDIVAEFELDKAALEKTAESNVEFSCSSSEGSAERGA 512
+ +V+P + G A E ELD A T NV S S
Sbjct: 336 TTLPDRTVDGSAVLPWN-GRAY------EIELDIAWDTAT---NVGISVGRSPDGTRHTN 385
Query: 513 LGPFGLLVLADDSLSE 528
+G +G + D S+
Sbjct: 386 IGKYGADLYVDRGPSD 401
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 272 AIGSRINRTGITFVYDTKDFINYELLRGVLHGVPNTGMWECVD 314
A G + R + V++ D +Y++L +L G+ G W C D
Sbjct: 664 AFGQNLGR--VVVVFNCDDSFDYQVLSRLLVGITQIGAWGCFD 704
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 272 AIGSRINRTGITFVYDTKDFINYELLRGVLHGVPNTGMWECVD 314
A G + R + V++ D +Y++L +L G+ G W C D
Sbjct: 445 AFGQNLGR--VVVVFNCDDSFDYQVLSRLLVGITQIGAWGCFD 485
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,659,736
Number of Sequences: 62578
Number of extensions: 946600
Number of successful extensions: 2002
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1916
Number of HSP's gapped (non-prelim): 29
length of query: 704
length of database: 14,973,337
effective HSP length: 106
effective length of query: 598
effective length of database: 8,340,069
effective search space: 4987361262
effective search space used: 4987361262
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)