BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005282
(704 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 101/192 (52%), Gaps = 1/192 (0%)
Query: 194 GIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHF 253
G+ LV+LL D +VQ+ AA AL +A DE K IV+ + LV +L S D+ V
Sbjct: 45 GVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQK 104
Query: 254 EAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKV 313
EA + N+ K ++ AG ++ ++ LL+S+ SE ++EAA L A+ +
Sbjct: 105 EAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 164
Query: 314 HIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQD-THNQAGIAQDGGILPLLKLLDSK 372
IV G V L+++L S DS++++ +A AL +A T I GG+ L KLL S
Sbjct: 165 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST 224
Query: 373 NGSLQHNAAFAL 384
+ +Q A AL
Sbjct: 225 DSEVQKEAQRAL 236
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 112/216 (51%), Gaps = 4/216 (1%)
Query: 195 IPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFE 254
+ LV+LL D + Q+ AA L +A K IV+ + LV +L S D+ V E
Sbjct: 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKE 63
Query: 255 AVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVH 314
A + N+ K ++ AG ++ ++ LL+S+ SE ++EAA L A+ +
Sbjct: 64 AARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 123
Query: 315 IVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQ--DTHNQAGIAQDGGILPLLKLLDSK 372
IV G V L+++L S DS++++ +A AL +A D +A I GG+ L+KLL S
Sbjct: 124 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA-IVDAGGVEVLVKLLTST 182
Query: 373 NGSLQHNAAFALYGLADNEDN-VADLVRVGGVQKLQ 407
+ +Q AA AL +A + + +V GGV+ LQ
Sbjct: 183 DSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQ 218
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 92/175 (52%), Gaps = 4/175 (2%)
Query: 235 NALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESK 294
N + LV +L S D+ EA + + S K ++ AG ++ ++ LL+S+ SE +
Sbjct: 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQ 61
Query: 295 REAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQ--DTHN 352
+EAA L A+ + IV G V L+++L S DS++++ +A AL +A D
Sbjct: 62 KEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 121
Query: 353 QAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDN-VADLVRVGGVQKL 406
+A I GG+ L+KLL S + +Q AA AL +A D + +V GGV+ L
Sbjct: 122 KA-IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVL 175
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 71/160 (44%), Gaps = 20/160 (12%)
Query: 63 TDRAAAKTASHALVEFAKN-EEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKE 121
TD K A+ AL A +E + IVD G V LV+ L + + EV+KE
Sbjct: 98 TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS----------TDSEVQKE 147
Query: 122 CAFALGLLAVKPEHQ-QIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAH 180
A AL +A P+ + IVD G + LV LL S V + AA A+ N+A
Sbjct: 148 AARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD--------SEVQKEAARALANIAS 199
Query: 181 ENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTL 220
+ + G+ L +LL D +VQ+ A AL +
Sbjct: 200 GPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENI 239
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 72/130 (55%)
Query: 532 NPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMM 591
N +D V G++F AH+ L A S F AMF+ +E VEI ++ VF+ MM
Sbjct: 171 NSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMM 230
Query: 592 RFIYTGNVDVSVDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNAT 651
FIYTG +A DLL AAD+Y LE LK +CE ++ +SVEN + L++ ++A
Sbjct: 231 CFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSAD 290
Query: 652 TLKQSCILFI 661
LK + FI
Sbjct: 291 QLKTQAVDFI 300
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 145
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 69/123 (56%)
Query: 532 NPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMM 591
N +D V G++F AH+ L A S F AMF+ +E VEI ++ VF+ MM
Sbjct: 22 NSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMM 81
Query: 592 RFIYTGNVDVSVDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNAT 651
FIYTG +A DLL AAD+Y LE LK +CE ++ +SVEN + L++ ++A
Sbjct: 82 CFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSAD 141
Query: 652 TLK 654
LK
Sbjct: 142 QLK 144
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 122/246 (49%), Gaps = 22/246 (8%)
Query: 54 LNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIP 113
+ + +SD+ + T + + NE+I + ++D GA+PALV+ L +P
Sbjct: 17 MTQQLNSDDMQEQLSATRKFSQILSDGNEQIQA-VIDAGALPALVQLLSSP--------- 66
Query: 114 YEHEVEKECAFALGLLAVKPEHQ-QIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAA 172
++ +E +AL +A Q Q ++D GALP LV LL S +++ A
Sbjct: 67 -NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL--------SSPNEQILQEAL 117
Query: 173 DAITNLAHENANIKTRVRVEDG-IPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLI 231
A++N+A N + + ++ G +P LV+LL + ++ + A AL +A +E + +
Sbjct: 118 WALSNIAS-GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 176
Query: 232 VECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCS 291
++ ALP LV +L S + + EA+ + N+ K+ V AGAL+ + L S
Sbjct: 177 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENE 236
Query: 292 ESKREA 297
+ ++EA
Sbjct: 237 KIQKEA 242
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 106/215 (49%), Gaps = 2/215 (0%)
Query: 195 IPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFE 254
+P + + L D++ Q +A + +E + +++ ALP LV +L S + + E
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 255 AVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVH 314
A+ + N+ + VI AGAL ++ LLSS + +EA L A+ +
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133
Query: 315 IVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILP-LLKLLDSKN 373
++ GA+ L+++L SP+ Q+ + + +AL +A + Q D G LP L++LL S N
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN 193
Query: 374 GSLQHNAAFALYGLADNEDNVADLVR-VGGVQKLQ 407
+ A +AL +A + V+ G ++KL+
Sbjct: 194 EQILQEALWALSNIASGGNEQKQAVKEAGALEKLE 228
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 106/208 (50%), Gaps = 2/208 (0%)
Query: 182 NANIKTRVRVEDG-IPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTL 240
+ N + + ++ G +P LV+LL + ++ + A AL +A +E + +++ ALP L
Sbjct: 42 DGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPAL 101
Query: 241 VLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALL 300
V +L S + + EA+ + N+ + VI AGAL ++ LLSS + +EA
Sbjct: 102 VQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA 161
Query: 301 LGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDG 360
L A+ + ++ GA+ L+++L SP+ Q+ + + +AL +A + Q ++
Sbjct: 162 LSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEA 221
Query: 361 GILPLLKLLDS-KNGSLQHNAAFALYGL 387
G L L+ L S +N +Q A AL L
Sbjct: 222 GALEKLEQLQSHENEKIQKEAQEALEKL 249
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 100/198 (50%), Gaps = 11/198 (5%)
Query: 134 EHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVED 193
E Q ++D GALP LV LL S +++ A A++N+A N + + ++
Sbjct: 45 EQIQAVIDAGALPALVQLL--------SSPNEQILQEALWALSNIAS-GGNEQIQAVIDA 95
Query: 194 G-IPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVH 252
G +P LV+LL + ++ + A AL +A +E + +++ ALP LV +L S + +
Sbjct: 96 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 155
Query: 253 FEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSK 312
EA+ + N+ + VI AGAL ++ LLSS + +EA L A+ + K
Sbjct: 156 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK 215
Query: 313 VHIVQRGAVRPLIEMLQS 330
+ + GA+ L E LQS
Sbjct: 216 QAVKEAGALEKL-EQLQS 232
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 74/304 (24%), Positives = 143/304 (47%), Gaps = 23/304 (7%)
Query: 71 ASHALVEFAKN-EEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLL 129
A+ AL A E +++D+GAVP V+ L + +V ++ +ALG +
Sbjct: 138 AAWALTNIASGTSENTKVVIDHGAVPIFVKLLGS----------SSDDVREQAVWALGNV 187
Query: 130 AV-KPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTR 188
A P+ + +++ GAL L++ L ++ LS ++R A ++N +
Sbjct: 188 AGDSPKCRDLVLANGALLPLLAQLNEHTK------LS-MLRNATWTLSNFCRGKPQ-PSF 239
Query: 189 VRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSED 248
+ +P L L+ D +V A AL L+ ++ + ++E P LV +L
Sbjct: 240 EQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPS 299
Query: 249 ASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSES-KREAALLLGQFAAA 307
SV A+ +GN+V + + +I AL ++ LL+ + +S K+EA + A
Sbjct: 300 PSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG 359
Query: 308 DSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGR-LAQDTHNQAG-IAQDGGILPL 365
+ + ++ G + PL+ +LQ+ + +K+ +A+A+ + +H+Q + +G I PL
Sbjct: 360 NKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPL 419
Query: 366 LKLL 369
LL
Sbjct: 420 CDLL 423
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 4/178 (2%)
Query: 195 IPPLVELLKFVDV-KVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHF 253
+P V+ L D ++Q AA AL +A EN K++++ A+P V +L S V
Sbjct: 119 VPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVRE 178
Query: 254 EAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESK-REAALLLGQFAAADSNSK 312
+AV +GN+ SP + V+ GAL P++ L+ S R A L F
Sbjct: 179 QAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPS 238
Query: 313 VHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILP-LLKLL 369
R A+ L ++ S D ++ + +AL L+ T+++ + G+ P L++LL
Sbjct: 239 FEQT-RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 295
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 314 HIVQRGAVRPLIEMLQSPD-SQLKEMSAFALGRLAQDTHNQAGIAQDGGILPL-LKLLDS 371
++Q G V ++ L D QL+ +A+AL +A T + D G +P+ +KLL S
Sbjct: 112 EVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGS 171
Query: 372 KNGSLQHNAAFALYGLADNEDNVADLVRVGG 402
+ ++ A +AL +A + DLV G
Sbjct: 172 SSDDVREQAVWALGNVAGDSPKCRDLVLANG 202
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 74/304 (24%), Positives = 143/304 (47%), Gaps = 23/304 (7%)
Query: 71 ASHALVEFAKN-EEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLL 129
A+ AL A E +++D+GAVP V+ L + +V ++ +ALG +
Sbjct: 100 AAWALTNIASGTSENTKVVIDHGAVPIFVKLLGS----------SSDDVREQAVWALGNV 149
Query: 130 AV-KPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTR 188
A P+ + +++ GAL L++ L ++ LS ++R A ++N +
Sbjct: 150 AGDSPKCRDLVLANGALLPLLAQLNEHTK------LS-MLRNATWTLSNFCRGKPQ-PSF 201
Query: 189 VRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSED 248
+ +P L L+ D +V A AL L+ ++ + ++E P LV +L
Sbjct: 202 EQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPS 261
Query: 249 ASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSES-KREAALLLGQFAAA 307
SV A+ +GN+V + + +I AL ++ LL+ + +S K+EA + A
Sbjct: 262 PSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG 321
Query: 308 DSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGR-LAQDTHNQAG-IAQDGGILPL 365
+ + ++ G + PL+ +LQ+ + +K+ +A+A+ + +H+Q + +G I PL
Sbjct: 322 NKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPL 381
Query: 366 LKLL 369
LL
Sbjct: 382 CDLL 385
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 4/178 (2%)
Query: 195 IPPLVELLKFVDV-KVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHF 253
+P V+ L D ++Q AA AL +A EN K++++ A+P V +L S V
Sbjct: 81 VPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVRE 140
Query: 254 EAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESK-REAALLLGQFAAADSNSK 312
+AV +GN+ SP + V+ GAL P++ L+ S R A L F
Sbjct: 141 QAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPS 200
Query: 313 VHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILP-LLKLL 369
R A+ L ++ S D ++ + +AL L+ T+++ + G+ P L++LL
Sbjct: 201 FEQT-RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 257
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 84/166 (50%), Gaps = 6/166 (3%)
Query: 224 NDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNL--VHSSPSIKKEVILAGALQP 281
+D++K + ++LP ++ + S+D ++ EA L + SP I +EVI +G +
Sbjct: 25 DDDDKAMADIGSSLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPI-EEVIQSGVVPR 83
Query: 282 VIGLLS-SSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSA 340
+ L+ + + EAA L A+ S + ++ GAV +++L S ++E +
Sbjct: 84 FVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAV 143
Query: 341 FALGRLAQDTHN-QAGIAQDGGILPLLKLLDSKNG-SLQHNAAFAL 384
+ALG +A D+ + + +G +LPLL L+ S+ NA + L
Sbjct: 144 WALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTL 189
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 314 HIVQRGAVRPLIEMLQSPD-SQLKEMSAFALGRLAQDTHNQAGIAQDGGILPL-LKLLDS 371
++Q G V ++ L D QL+ +A+AL +A T + D G +P+ +KLL S
Sbjct: 74 EVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGS 133
Query: 372 KNGSLQHNAAFALYGLADNEDNVADLVRVGG 402
+ ++ A +AL +A + DLV G
Sbjct: 134 SSDDVREQAVWALGNVAGDSPKCRDLVLANG 164
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 72.4 bits (176), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 134/293 (45%), Gaps = 24/293 (8%)
Query: 88 IVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTGALP 146
+VD GA+PA + L +P + H + ++ +ALG +A + +++ GA+
Sbjct: 158 VVDGGAIPAFISLLASP---------HAH-ISEQAVWALGNIAGAGSAFRDLVIKHGAID 207
Query: 147 HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD 206
L++LL S G +R ++NL VE +P LV LL D
Sbjct: 208 PLLALLAVPDL---STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND 264
Query: 207 VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSS 266
+V + A+ L +E +++V+ +P LV +L + + + A+ IGN+V +
Sbjct: 265 PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 324
Query: 267 PSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIE 326
++VI AGAL LL++ + ++EA + A + +V G V L+
Sbjct: 325 DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 384
Query: 327 MLQSPDSQLKEMSAFAL------GRLAQDTHNQAGIAQDGGILPLLKLLDSKN 373
+L D + ++ +A+A+ G + Q + + G I PL+ LL +K+
Sbjct: 385 VLSKADFKTQKAAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNLLSAKD 433
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 195 IPPLVELLKFVDVK-VQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHF 253
IP V L D +Q +A AL +A E K +V+ A+P + +L S A +
Sbjct: 121 IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 180
Query: 254 EAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLS 287
+AV +GN+ + + + VI GA+ P++ LL+
Sbjct: 181 QAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLA 214
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 73/345 (21%), Positives = 142/345 (41%), Gaps = 34/345 (9%)
Query: 139 IVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDG-IPP 197
I+ G +P VS L + S + +A A+TN+A + +T+ V+ G IP
Sbjct: 115 IIRAGLIPKFVSFLGKTD-------CSPIQFESAWALTNIASGTSE-QTKAVVDGGAIPA 166
Query: 198 LVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVG 257
+ LL + A AL +A + L+++ A+ L+ +L D S A G
Sbjct: 167 FISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTL--ACG 224
Query: 258 VIGNLVHSSPSIKKEVILAGALQPV-------IGLLSSSCSESKREAALLLGQFAAADSN 310
+ NL + ++ + A L V + LL + E ++ + +
Sbjct: 225 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE 284
Query: 311 SKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLL-KLL 369
+V++G V L+++L + + + + A+G + T Q D G L + LL
Sbjct: 285 RIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 344
Query: 370 DSKNGSLQHNAAFALYGL-ADNEDNVADLVRVG------GVQKLQDGEFTVQP------T 416
+ ++Q A + + + A +D + +V G GV L +F Q T
Sbjct: 345 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGV--LSKADFKTQKAAAWAIT 402
Query: 417 KDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHL 461
T++++ VH ++ L+ LL D + + + A++++
Sbjct: 403 NYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 447
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 134/293 (45%), Gaps = 24/293 (8%)
Query: 88 IVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPE-HQQIIVDTGALP 146
+VD GA+PA + L +P + H + ++ +ALG +A + +++ GA+
Sbjct: 115 VVDGGAIPAFISLLASP---------HAH-ISEQAVWALGNIAGDGSAFRDLVIKHGAID 164
Query: 147 HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD 206
L++LL S G +R ++NL VE +P LV LL D
Sbjct: 165 PLLALLAVPDL---STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND 221
Query: 207 VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSS 266
+V + A+ L +E +++V+ +P LV +L + + + A+ IGN+V +
Sbjct: 222 PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 281
Query: 267 PSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIE 326
++VI AGAL LL++ + ++EA + A + +V G V L+
Sbjct: 282 DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 341
Query: 327 MLQSPDSQLKEMSAFAL------GRLAQDTHNQAGIAQDGGILPLLKLLDSKN 373
+L D + ++ +A+A+ G + Q + + G I PL+ LL +K+
Sbjct: 342 VLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNLLSAKD 390
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 195 IPPLVELLKFVDVK-VQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHF 253
IP V L D +Q +A AL +A E K +V+ A+P + +L S A +
Sbjct: 78 IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 137
Query: 254 EAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLS 287
+AV +GN+ + + VI GA+ P++ LL+
Sbjct: 138 QAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 171
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 72/343 (20%), Positives = 141/343 (41%), Gaps = 30/343 (8%)
Query: 139 IVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDG-IPP 197
I+ G +P VS L + S + +A A+TN+A + +T+ V+ G IP
Sbjct: 72 IIRAGLIPKFVSFLGKTD-------CSPIQFESAWALTNIASGTSE-QTKAVVDGGAIPA 123
Query: 198 LVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVG 257
+ LL + A AL +A + L+++ A+ L+ +L D S A G
Sbjct: 124 FISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTL--ACG 181
Query: 258 VIGNLVHSSPSIKKEVILAGALQPV-------IGLLSSSCSESKREAALLLGQFAAADSN 310
+ NL + ++ + A L V + LL + E ++ + +
Sbjct: 182 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE 241
Query: 311 SKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLL-KLL 369
+V++G V L+++L + + + + A+G + T Q D G L + LL
Sbjct: 242 RIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 301
Query: 370 DSKNGSLQHNAAFALYGL-ADNEDNVADLVRVGGVQ----KLQDGEFTVQP------TKD 418
+ ++Q A + + + A +D + +V G V L +F Q T
Sbjct: 302 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNY 361
Query: 419 CVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHL 461
T++++ VH ++ L+ LL D + + + A++++
Sbjct: 362 TSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 404
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 134/293 (45%), Gaps = 24/293 (8%)
Query: 88 IVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPE-HQQIIVDTGALP 146
+VD GA+PA + L +P + H + ++ +ALG +A + +++ GA+
Sbjct: 139 VVDGGAIPAFISLLASP---------HAH-ISEQAVWALGNIAGDGSAFRDLVIKHGAID 188
Query: 147 HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD 206
L++LL S G +R ++NL VE +P LV LL D
Sbjct: 189 PLLALLAVPDL---STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND 245
Query: 207 VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSS 266
+V + A+ L +E +++V+ +P LV +L + + + A+ IGN+V +
Sbjct: 246 PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 305
Query: 267 PSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIE 326
++VI AGAL LL++ + ++EA + A + +V G V L+
Sbjct: 306 DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 365
Query: 327 MLQSPDSQLKEMSAFAL------GRLAQDTHNQAGIAQDGGILPLLKLLDSKN 373
+L D + ++ +A+A+ G + Q + + G I PL+ LL +K+
Sbjct: 366 VLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNLLSAKD 414
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 195 IPPLVELLKFVDVK-VQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHF 253
IP V L D +Q +A AL +A E K +V+ A+P + +L S A +
Sbjct: 102 IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 161
Query: 254 EAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLS 287
+AV +GN+ + + VI GA+ P++ LL+
Sbjct: 162 QAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 195
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 72/343 (20%), Positives = 141/343 (41%), Gaps = 30/343 (8%)
Query: 139 IVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDG-IPP 197
I+ G +P VS L + S + +A A+TN+A + +T+ V+ G IP
Sbjct: 96 IIRAGLIPKFVSFLGKTD-------CSPIQFESAWALTNIASGTSE-QTKAVVDGGAIPA 147
Query: 198 LVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVG 257
+ LL + A AL +A + L+++ A+ L+ +L D S A G
Sbjct: 148 FISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTL--ACG 205
Query: 258 VIGNLVHSSPSIKKEVILAGALQPV-------IGLLSSSCSESKREAALLLGQFAAADSN 310
+ NL + ++ + A L V + LL + E ++ + +
Sbjct: 206 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE 265
Query: 311 SKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLL-KLL 369
+V++G V L+++L + + + + A+G + T Q D G L + LL
Sbjct: 266 RIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 325
Query: 370 DSKNGSLQHNAAFALYGL-ADNEDNVADLVRVGGVQ----KLQDGEFTVQP------TKD 418
+ ++Q A + + + A +D + +V G V L +F Q T
Sbjct: 326 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNY 385
Query: 419 CVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHL 461
T++++ VH ++ L+ LL D + + + A++++
Sbjct: 386 TSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 428
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 134/293 (45%), Gaps = 24/293 (8%)
Query: 88 IVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPE-HQQIIVDTGALP 146
+VD GA+PA + L +P + H + ++ +ALG +A + +++ GA+
Sbjct: 89 VVDGGAIPAFISLLASP---------HAH-ISEQAVWALGNIAGDGSAFRDLVIKHGAID 138
Query: 147 HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD 206
L++LL S G +R ++NL VE +P LV LL D
Sbjct: 139 PLLALLAVPDL---STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND 195
Query: 207 VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSS 266
+V + A+ L +E +++V+ +P LV +L + + + A+ IGN+V +
Sbjct: 196 PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 255
Query: 267 PSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIE 326
++VI AGAL LL++ + ++EA + A + +V G V L+
Sbjct: 256 DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 315
Query: 327 MLQSPDSQLKEMSAFAL------GRLAQDTHNQAGIAQDGGILPLLKLLDSKN 373
+L D + ++ +A+A+ G + Q + + G I PL+ LL +K+
Sbjct: 316 VLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNLLSAKD 364
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 195 IPPLVELLKFVDVK-VQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHF 253
IP V L D +Q +A AL +A E K +V+ A+P + +L S A +
Sbjct: 52 IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 111
Query: 254 EAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLS 287
+AV +GN+ + + VI GA+ P++ LL+
Sbjct: 112 QAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 145
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 72/343 (20%), Positives = 141/343 (41%), Gaps = 30/343 (8%)
Query: 139 IVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDG-IPP 197
I+ G +P VS L + S + +A A+TN+A + +T+ V+ G IP
Sbjct: 46 IIRAGLIPKFVSFLGKTD-------CSPIQFESAWALTNIASGTSE-QTKAVVDGGAIPA 97
Query: 198 LVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVG 257
+ LL + A AL +A + L+++ A+ L+ +L D S A G
Sbjct: 98 FISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTL--ACG 155
Query: 258 VIGNLVHSSPSIKKEVILAGALQPV-------IGLLSSSCSESKREAALLLGQFAAADSN 310
+ NL + ++ + A L V + LL + E ++ + +
Sbjct: 156 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE 215
Query: 311 SKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLL-KLL 369
+V++G V L+++L + + + + A+G + T Q D G L + LL
Sbjct: 216 RIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 275
Query: 370 DSKNGSLQHNAAFALYGL-ADNEDNVADLVRVGGVQ----KLQDGEFTVQP------TKD 418
+ ++Q A + + + A +D + +V G V L +F Q T
Sbjct: 276 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNY 335
Query: 419 CVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHL 461
T++++ VH ++ L+ LL D + + + A++++
Sbjct: 336 TSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 378
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 134/293 (45%), Gaps = 24/293 (8%)
Query: 88 IVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPE-HQQIIVDTGALP 146
+VD GA+PA + L +P + H + ++ +ALG +A + +++ GA+
Sbjct: 125 VVDGGAIPAFISLLASP---------HAH-ISEQAVWALGNIAGDGSAFRDLVIKHGAID 174
Query: 147 HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD 206
L++LL S G +R ++NL VE +P LV LL D
Sbjct: 175 PLLALLAVPDL---STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND 231
Query: 207 VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSS 266
+V + A+ L +E +++V+ +P LV +L + + + A+ IGN+V +
Sbjct: 232 PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 291
Query: 267 PSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIE 326
++VI AGAL LL++ + ++EA + A + +V G V L+
Sbjct: 292 DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 351
Query: 327 MLQSPDSQLKEMSAFAL------GRLAQDTHNQAGIAQDGGILPLLKLLDSKN 373
+L D + ++ +A+A+ G + Q + + G I PL+ LL +K+
Sbjct: 352 VLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNLLSAKD 400
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 195 IPPLVELLKFVDVK-VQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHF 253
IP V L D +Q +A AL +A E K +V+ A+P + +L S A +
Sbjct: 88 IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 147
Query: 254 EAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLS 287
+AV +GN+ + + VI GA+ P++ LL+
Sbjct: 148 QAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 181
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 72/343 (20%), Positives = 141/343 (41%), Gaps = 30/343 (8%)
Query: 139 IVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDG-IPP 197
I+ G +P VS L + S + +A A+TN+A + +T+ V+ G IP
Sbjct: 82 IIRAGLIPKFVSFLGKTD-------CSPIQFESAWALTNIASGTSE-QTKAVVDGGAIPA 133
Query: 198 LVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVG 257
+ LL + A AL +A + L+++ A+ L+ +L D S A G
Sbjct: 134 FISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTL--ACG 191
Query: 258 VIGNLVHSSPSIKKEVILAGALQPV-------IGLLSSSCSESKREAALLLGQFAAADSN 310
+ NL + ++ + A L V + LL + E ++ + +
Sbjct: 192 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE 251
Query: 311 SKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLL-KLL 369
+V++G V L+++L + + + + A+G + T Q D G L + LL
Sbjct: 252 RIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 311
Query: 370 DSKNGSLQHNAAFALYGL-ADNEDNVADLVRVGGVQ----KLQDGEFTVQP------TKD 418
+ ++Q A + + + A +D + +V G V L +F Q T
Sbjct: 312 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNY 371
Query: 419 CVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHL 461
T++++ VH ++ L+ LL D + + + A++++
Sbjct: 372 TSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 414
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 134/293 (45%), Gaps = 24/293 (8%)
Query: 88 IVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPE-HQQIIVDTGALP 146
+VD GA+PA + L +P + H + ++ +ALG +A + +++ GA+
Sbjct: 84 VVDGGAIPAFISLLASP---------HAH-ISEQAVWALGNIAGDGSAFRDLVIKHGAID 133
Query: 147 HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD 206
L++LL S G +R ++NL VE +P LV LL D
Sbjct: 134 PLLALLAVPDL---STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND 190
Query: 207 VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSS 266
+V + A+ L +E +++V+ +P LV +L + + + A+ IGN+V +
Sbjct: 191 PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 250
Query: 267 PSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIE 326
++VI AGAL LL++ + ++EA + A + +V G V L+
Sbjct: 251 DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 310
Query: 327 MLQSPDSQLKEMSAFAL------GRLAQDTHNQAGIAQDGGILPLLKLLDSKN 373
+L D + ++ +A+A+ G + Q + + G I PL+ LL +K+
Sbjct: 311 VLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNLLSAKD 359
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 195 IPPLVELLKFVDVK-VQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHF 253
IP V L D +Q +A AL +A E K +V+ A+P + +L S A +
Sbjct: 47 IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 106
Query: 254 EAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLS 287
+AV +GN+ + + VI GA+ P++ LL+
Sbjct: 107 QAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 140
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 72/343 (20%), Positives = 141/343 (41%), Gaps = 30/343 (8%)
Query: 139 IVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDG-IPP 197
I+ G +P VS L + S + +A A+TN+A + +T+ V+ G IP
Sbjct: 41 IIRAGLIPKFVSFLGKTD-------CSPIQFESAWALTNIASGTSE-QTKAVVDGGAIPA 92
Query: 198 LVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVG 257
+ LL + A AL +A + L+++ A+ L+ +L D S A G
Sbjct: 93 FISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTL--ACG 150
Query: 258 VIGNLVHSSPSIKKEVILAGALQPV-------IGLLSSSCSESKREAALLLGQFAAADSN 310
+ NL + ++ + A L V + LL + E ++ + +
Sbjct: 151 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE 210
Query: 311 SKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLL-KLL 369
+V++G V L+++L + + + + A+G + T Q D G L + LL
Sbjct: 211 RIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 270
Query: 370 DSKNGSLQHNAAFALYGL-ADNEDNVADLVRVGGVQ----KLQDGEFTVQP------TKD 418
+ ++Q A + + + A +D + +V G V L +F Q T
Sbjct: 271 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNY 330
Query: 419 CVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHL 461
T++++ VH ++ L+ LL D + + + A++++
Sbjct: 331 TSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 373
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 134/293 (45%), Gaps = 24/293 (8%)
Query: 88 IVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPE-HQQIIVDTGALP 146
+VD GA+PA + L +P + H + ++ +ALG +A + +++ GA+
Sbjct: 95 VVDGGAIPAFISLLASP---------HAH-ISEQAVWALGNIAGDGSAFRDLVIKHGAID 144
Query: 147 HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD 206
L++LL S G +R ++NL VE +P LV LL D
Sbjct: 145 PLLALLAVPDL---STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND 201
Query: 207 VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSS 266
+V + A+ L +E +++V+ +P LV +L + + + A+ IGN+V +
Sbjct: 202 PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 261
Query: 267 PSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIE 326
++VI AGAL LL++ + ++EA + A + +V G V L+
Sbjct: 262 DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 321
Query: 327 MLQSPDSQLKEMSAFAL------GRLAQDTHNQAGIAQDGGILPLLKLLDSKN 373
+L D + ++ +A+A+ G + Q + + G I PL+ LL +K+
Sbjct: 322 VLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNLLSAKD 370
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 195 IPPLVELLKFVDVK-VQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHF 253
IP V L D +Q +A AL +A E K +V+ A+P + +L S A +
Sbjct: 58 IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 117
Query: 254 EAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLS 287
+AV +GN+ + + VI GA+ P++ LL+
Sbjct: 118 QAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 151
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 72/343 (20%), Positives = 141/343 (41%), Gaps = 30/343 (8%)
Query: 139 IVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDG-IPP 197
I+ G +P VS L + S + +A A+TN+A + +T+ V+ G IP
Sbjct: 52 IIRAGLIPKFVSFLGKTD-------CSPIQFESAWALTNIASGTSE-QTKAVVDGGAIPA 103
Query: 198 LVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVG 257
+ LL + A AL +A + L+++ A+ L+ +L D S A G
Sbjct: 104 FISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTL--ACG 161
Query: 258 VIGNLVHSSPSIKKEVILAGALQPV-------IGLLSSSCSESKREAALLLGQFAAADSN 310
+ NL + ++ + A L V + LL + E ++ + +
Sbjct: 162 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE 221
Query: 311 SKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLL-KLL 369
+V++G V L+++L + + + + A+G + T Q D G L + LL
Sbjct: 222 RIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 281
Query: 370 DSKNGSLQHNAAFALYGL-ADNEDNVADLVRVGGVQ----KLQDGEFTVQP------TKD 418
+ ++Q A + + + A +D + +V G V L +F Q T
Sbjct: 282 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNY 341
Query: 419 CVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHL 461
T++++ VH ++ L+ LL D + + + A++++
Sbjct: 342 TSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 384
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 134/293 (45%), Gaps = 24/293 (8%)
Query: 88 IVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPE-HQQIIVDTGALP 146
+VD GA+PA + L +P + H + ++ +ALG +A + +++ GA+
Sbjct: 139 VVDGGAIPAFISLLASP---------HAH-ISEQAVWALGNIAGDGSAFRDLVIKHGAID 188
Query: 147 HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD 206
L++LL S G +R ++NL VE +P LV LL D
Sbjct: 189 PLLALLAVPDL---STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND 245
Query: 207 VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSS 266
+V + A+ L +E +++V+ +P LV +L + + + A+ IGN+V +
Sbjct: 246 PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 305
Query: 267 PSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIE 326
++VI AGAL LL++ + ++EA + A + +V G V L+
Sbjct: 306 DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 365
Query: 327 MLQSPDSQLKEMSAFAL------GRLAQDTHNQAGIAQDGGILPLLKLLDSKN 373
+L D + ++ +A+A+ G + Q + + G I PL+ LL +K+
Sbjct: 366 VLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNLLSAKD 414
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 195 IPPLVELLKFVDVK-VQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHF 253
IP V L D +Q +A AL +A E K +V+ A+P + +L S A +
Sbjct: 102 IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 161
Query: 254 EAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLS 287
+AV +GN+ + + VI GA+ P++ LL+
Sbjct: 162 QAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 195
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 72/343 (20%), Positives = 141/343 (41%), Gaps = 30/343 (8%)
Query: 139 IVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDG-IPP 197
I+ G +P VS L + S + +A A+TN+A + +T+ V+ G IP
Sbjct: 96 IIRAGLIPKFVSFLGKTD-------CSPIQFESAWALTNIASGTSE-QTKAVVDGGAIPA 147
Query: 198 LVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVG 257
+ LL + A AL +A + L+++ A+ L+ +L D S A G
Sbjct: 148 FISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTL--ACG 205
Query: 258 VIGNLVHSSPSIKKEVILAGALQPV-------IGLLSSSCSESKREAALLLGQFAAADSN 310
+ NL + ++ + A L V + LL + E ++ + +
Sbjct: 206 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE 265
Query: 311 SKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLL-KLL 369
+V++G V L+++L + + + + A+G + T Q D G L + LL
Sbjct: 266 RIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 325
Query: 370 DSKNGSLQHNAAFALYGL-ADNEDNVADLVRVGGVQ----KLQDGEFTVQP------TKD 418
+ ++Q A + + + A +D + +V G V L +F Q T
Sbjct: 326 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNY 385
Query: 419 CVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHL 461
T++++ VH ++ L+ LL D + + + A++++
Sbjct: 386 TSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 428
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 134/293 (45%), Gaps = 24/293 (8%)
Query: 88 IVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPE-HQQIIVDTGALP 146
+VD GA+PA + L +P + H + ++ +ALG +A + +++ GA+
Sbjct: 84 VVDGGAIPAFISLLASP---------HAH-ISEQAVWALGNIAGDGSAFRDLVIKHGAID 133
Query: 147 HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD 206
L++LL S G +R ++NL VE +P LV LL D
Sbjct: 134 PLLALLAVPDL---STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND 190
Query: 207 VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSS 266
+V + A+ L +E +++V+ +P LV +L + + + A+ IGN+V +
Sbjct: 191 PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 250
Query: 267 PSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIE 326
++VI AGAL LL++ + ++EA + A + +V G V L+
Sbjct: 251 DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 310
Query: 327 MLQSPDSQLKEMSAFAL------GRLAQDTHNQAGIAQDGGILPLLKLLDSKN 373
+L D + ++ +A+A+ G + Q + + G I PL+ LL +K+
Sbjct: 311 VLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNLLSAKD 359
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 195 IPPLVELLKFVDVK-VQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHF 253
IP V L D +Q +A AL +A E K +V+ A+P + +L S A +
Sbjct: 47 IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 106
Query: 254 EAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLS 287
+AV +GN+ + + VI GA+ P++ LL+
Sbjct: 107 QAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 140
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 72/343 (20%), Positives = 141/343 (41%), Gaps = 30/343 (8%)
Query: 139 IVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDG-IPP 197
I+ G +P VS L + S + +A A+TN+A + +T+ V+ G IP
Sbjct: 41 IIRAGLIPKFVSFLGKTD-------CSPIQFESAWALTNIASGTSE-QTKAVVDGGAIPA 92
Query: 198 LVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVG 257
+ LL + A AL +A + L+++ A+ L+ +L D S A G
Sbjct: 93 FISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTL--ACG 150
Query: 258 VIGNLVHSSPSIKKEVILAGALQPV-------IGLLSSSCSESKREAALLLGQFAAADSN 310
+ NL + ++ + A L V + LL + E ++ + +
Sbjct: 151 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE 210
Query: 311 SKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLL-KLL 369
+V++G V L+++L + + + + A+G + T Q D G L + LL
Sbjct: 211 RIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 270
Query: 370 DSKNGSLQHNAAFALYGL-ADNEDNVADLVRVGGVQ----KLQDGEFTVQP------TKD 418
+ ++Q A + + + A +D + +V G V L +F Q T
Sbjct: 271 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNY 330
Query: 419 CVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHL 461
T++++ VH ++ L+ LL D + + + A++++
Sbjct: 331 TSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 373
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 134/293 (45%), Gaps = 24/293 (8%)
Query: 88 IVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPE-HQQIIVDTGALP 146
+VD GA+PA + L +P + H + ++ +ALG +A + +++ GA+
Sbjct: 88 VVDGGAIPAFISLLASP---------HAH-ISEQAVWALGNIAGDGSAFRDLVIKHGAID 137
Query: 147 HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD 206
L++LL S G +R ++NL VE +P LV LL D
Sbjct: 138 PLLALLAVPDL---STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND 194
Query: 207 VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSS 266
+V + A+ L +E +++V+ +P LV +L + + + A+ IGN+V +
Sbjct: 195 PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 254
Query: 267 PSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIE 326
++VI AGAL LL++ + ++EA + A + +V G V L+
Sbjct: 255 DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 314
Query: 327 MLQSPDSQLKEMSAFAL------GRLAQDTHNQAGIAQDGGILPLLKLLDSKN 373
+L D + ++ +A+A+ G + Q + + G I PL+ LL +K+
Sbjct: 315 VLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNLLSAKD 363
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 195 IPPLVELLKFVDVK-VQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHF 253
IP V L D +Q +A AL +A E K +V+ A+P + +L S A +
Sbjct: 51 IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 110
Query: 254 EAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLS 287
+AV +GN+ + + VI GA+ P++ LL+
Sbjct: 111 QAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 144
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 72/343 (20%), Positives = 141/343 (41%), Gaps = 30/343 (8%)
Query: 139 IVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDG-IPP 197
I+ G +P VS L + S + +A A+TN+A + +T+ V+ G IP
Sbjct: 45 IIRAGLIPKFVSFLGKTD-------CSPIQFESAWALTNIASGTSE-QTKAVVDGGAIPA 96
Query: 198 LVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVG 257
+ LL + A AL +A + L+++ A+ L+ +L D S A G
Sbjct: 97 FISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTL--ACG 154
Query: 258 VIGNLVHSSPSIKKEVILAGALQPV-------IGLLSSSCSESKREAALLLGQFAAADSN 310
+ NL + ++ + A L V + LL + E ++ + +
Sbjct: 155 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE 214
Query: 311 SKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLL-KLL 369
+V++G V L+++L + + + + A+G + T Q D G L + LL
Sbjct: 215 RIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 274
Query: 370 DSKNGSLQHNAAFALYGL-ADNEDNVADLVRVGGVQ----KLQDGEFTVQP------TKD 418
+ ++Q A + + + A +D + +V G V L +F Q T
Sbjct: 275 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNY 334
Query: 419 CVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHL 461
T++++ VH ++ L+ LL D + + + A++++
Sbjct: 335 TSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 377
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 134/293 (45%), Gaps = 24/293 (8%)
Query: 88 IVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPE-HQQIIVDTGALP 146
+VD GA+PA + L +P + H + ++ +ALG +A + +++ GA+
Sbjct: 139 VVDGGAIPAFISLLASP---------HAH-ISEQAVWALGNIAGDGSAFRDLVIKHGAID 188
Query: 147 HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD 206
L++LL S G +R ++NL VE +P LV LL D
Sbjct: 189 PLLALLAVPDL---STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND 245
Query: 207 VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSS 266
+V + A+ L +E +++V+ +P LV +L + + + A+ IGN+V +
Sbjct: 246 PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 305
Query: 267 PSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIE 326
++VI AGAL LL++ + ++EA + A + +V G V L+
Sbjct: 306 DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 365
Query: 327 MLQSPDSQLKEMSAFAL------GRLAQDTHNQAGIAQDGGILPLLKLLDSKN 373
+L D + ++ +A+A+ G + Q + + G I PL+ LL +K+
Sbjct: 366 VLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNLLSAKD 414
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 195 IPPLVELLKFVDVK-VQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHF 253
IP V L D +Q +A AL +A E K +V+ A+P + +L S A +
Sbjct: 102 IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 161
Query: 254 EAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLS 287
+AV +GN+ + + VI GA+ P++ LL+
Sbjct: 162 QAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 195
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 72/343 (20%), Positives = 141/343 (41%), Gaps = 30/343 (8%)
Query: 139 IVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDG-IPP 197
I+ G +P VS L + S + +A A+TN+A + +T+ V+ G IP
Sbjct: 96 IIRAGLIPKFVSFLGKTD-------CSPIQFESAWALTNIASGTSE-QTKAVVDGGAIPA 147
Query: 198 LVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVG 257
+ LL + A AL +A + L+++ A+ L+ +L D S A G
Sbjct: 148 FISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTL--ACG 205
Query: 258 VIGNLVHSSPSIKKEVILAGALQPV-------IGLLSSSCSESKREAALLLGQFAAADSN 310
+ NL + ++ + A L V + LL + E ++ + +
Sbjct: 206 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE 265
Query: 311 SKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLL-KLL 369
+V++G V L+++L + + + + A+G + T Q D G L + LL
Sbjct: 266 RIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 325
Query: 370 DSKNGSLQHNAAFALYGL-ADNEDNVADLVRVGGVQ----KLQDGEFTVQP------TKD 418
+ ++Q A + + + A +D + +V G V L +F Q T
Sbjct: 326 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNY 385
Query: 419 CVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHL 461
T++++ VH ++ L+ LL D + + + A++++
Sbjct: 386 TSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 428
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 134/293 (45%), Gaps = 24/293 (8%)
Query: 88 IVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPE-HQQIIVDTGALP 146
+VD GA+PA + L +P + H + ++ +ALG +A + +++ GA+
Sbjct: 89 VVDGGAIPAFISLLASP---------HAH-ISEQAVWALGNIAGDGSAFRDLVIKHGAID 138
Query: 147 HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD 206
L++LL S G +R ++NL VE +P LV LL D
Sbjct: 139 PLLALLAVPDL---STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND 195
Query: 207 VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSS 266
+V + A+ L +E +++V+ +P LV +L + + + A+ IGN+V +
Sbjct: 196 PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 255
Query: 267 PSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIE 326
++VI AGAL LL++ + ++EA + A + +V G V L+
Sbjct: 256 DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 315
Query: 327 MLQSPDSQLKEMSAFAL------GRLAQDTHNQAGIAQDGGILPLLKLLDSKN 373
+L D + ++ +A+A+ G + Q + + G I PL+ LL +K+
Sbjct: 316 VLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNLLSAKD 364
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 195 IPPLVELLKFVDVK-VQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHF 253
IP V L D +Q +A AL +A E K +V+ A+P + +L S A +
Sbjct: 52 IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 111
Query: 254 EAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLS 287
+AV +GN+ + + VI GA+ P++ LL+
Sbjct: 112 QAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 145
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 72/343 (20%), Positives = 141/343 (41%), Gaps = 30/343 (8%)
Query: 139 IVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDG-IPP 197
I+ G +P VS L + S + +A A+TN+A + +T+ V+ G IP
Sbjct: 46 IIRAGLIPKFVSFLGKTD-------CSPIQFESAWALTNIASGTSE-QTKAVVDGGAIPA 97
Query: 198 LVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVG 257
+ LL + A AL +A + L+++ A+ L+ +L D S A G
Sbjct: 98 FISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTL--ACG 155
Query: 258 VIGNLVHSSPSIKKEVILAGALQPV-------IGLLSSSCSESKREAALLLGQFAAADSN 310
+ NL + ++ + A L V + LL + E ++ + +
Sbjct: 156 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE 215
Query: 311 SKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLL-KLL 369
+V++G V L+++L + + + + A+G + T Q D G L + LL
Sbjct: 216 RIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 275
Query: 370 DSKNGSLQHNAAFALYGL-ADNEDNVADLVRVGGVQ----KLQDGEFTVQP------TKD 418
+ ++Q A + + + A +D + +V G V L +F Q T
Sbjct: 276 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNY 335
Query: 419 CVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHL 461
T++++ VH ++ L+ LL D + + + A++++
Sbjct: 336 TSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 378
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 134/293 (45%), Gaps = 24/293 (8%)
Query: 88 IVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPE-HQQIIVDTGALP 146
+VD GA+PA + L +P + H + ++ +ALG +A + +++ GA+
Sbjct: 89 VVDGGAIPAFISLLASP---------HAH-ISEQAVWALGNIAGDGSAFRDLVIKHGAID 138
Query: 147 HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD 206
L++LL S G +R ++NL VE +P LV LL D
Sbjct: 139 PLLALLAVPDL---STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND 195
Query: 207 VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSS 266
+V + A+ L +E +++V+ +P LV +L + + + A+ IGN+V +
Sbjct: 196 PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 255
Query: 267 PSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIE 326
++VI AGAL LL++ + ++EA + A + +V G V L+
Sbjct: 256 DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 315
Query: 327 MLQSPDSQLKEMSAFAL------GRLAQDTHNQAGIAQDGGILPLLKLLDSKN 373
+L D + ++ +A+A+ G + Q + + G I PL+ LL +K+
Sbjct: 316 VLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNLLSAKD 364
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 195 IPPLVELLKFVDVK-VQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHF 253
IP V L D +Q +A AL +A E K +V+ A+P + +L S A +
Sbjct: 52 IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 111
Query: 254 EAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLS 287
+AV +GN+ + + VI GA+ P++ LL+
Sbjct: 112 QAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 145
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 72/343 (20%), Positives = 141/343 (41%), Gaps = 30/343 (8%)
Query: 139 IVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDG-IPP 197
I+ G +P VS L + S + +A A+TN+A + +T+ V+ G IP
Sbjct: 46 IIRAGLIPKFVSFLGKTD-------CSPIQFESAWALTNIASGTSE-QTKAVVDGGAIPA 97
Query: 198 LVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVG 257
+ LL + A AL +A + L+++ A+ L+ +L D S A G
Sbjct: 98 FISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTL--ACG 155
Query: 258 VIGNLVHSSPSIKKEVILAGALQPV-------IGLLSSSCSESKREAALLLGQFAAADSN 310
+ NL + ++ + A L V + LL + E ++ + +
Sbjct: 156 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE 215
Query: 311 SKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLL-KLL 369
+V++G V L+++L + + + + A+G + T Q D G L + LL
Sbjct: 216 RIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 275
Query: 370 DSKNGSLQHNAAFALYGL-ADNEDNVADLVRVGGVQ----KLQDGEFTVQP------TKD 418
+ ++Q A + + + A +D + +V G V L +F Q T
Sbjct: 276 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNY 335
Query: 419 CVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHL 461
T++++ VH ++ L+ LL D + + + A++++
Sbjct: 336 TSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 378
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 134/293 (45%), Gaps = 24/293 (8%)
Query: 88 IVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPE-HQQIIVDTGALP 146
+VD GA+PA + L +P + H + ++ +ALG +A + +++ GA+
Sbjct: 123 VVDGGAIPAFISLLASP---------HAH-ISEQAVWALGNIAGDGSAFRDLVIKHGAID 172
Query: 147 HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD 206
L++LL S G +R ++NL VE +P LV LL D
Sbjct: 173 PLLALLAVPDL---STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND 229
Query: 207 VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSS 266
+V + A+ L +E +++V+ +P LV +L + + + A+ IGN+V +
Sbjct: 230 PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 289
Query: 267 PSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIE 326
++VI AGAL LL++ + ++EA + A + +V G V L+
Sbjct: 290 DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 349
Query: 327 MLQSPDSQLKEMSAFAL------GRLAQDTHNQAGIAQDGGILPLLKLLDSKN 373
+L D + ++ +A+A+ G + Q + + G I PL+ LL +K+
Sbjct: 350 VLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNLLSAKD 398
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 195 IPPLVELLKFVDVK-VQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHF 253
IP V L D +Q +A AL +A E K +V+ A+P + +L S A +
Sbjct: 86 IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 145
Query: 254 EAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLS 287
+AV +GN+ + + VI GA+ P++ LL+
Sbjct: 146 QAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 179
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 72/343 (20%), Positives = 141/343 (41%), Gaps = 30/343 (8%)
Query: 139 IVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDG-IPP 197
I+ G +P VS L + S + +A A+TN+A + +T+ V+ G IP
Sbjct: 80 IIRAGLIPKFVSFLGKTD-------CSPIQFESAWALTNIASGTSE-QTKAVVDGGAIPA 131
Query: 198 LVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVG 257
+ LL + A AL +A + L+++ A+ L+ +L D S A G
Sbjct: 132 FISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTL--ACG 189
Query: 258 VIGNLVHSSPSIKKEVILAGALQPV-------IGLLSSSCSESKREAALLLGQFAAADSN 310
+ NL + ++ + A L V + LL + E ++ + +
Sbjct: 190 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE 249
Query: 311 SKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLL-KLL 369
+V++G V L+++L + + + + A+G + T Q D G L + LL
Sbjct: 250 RIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 309
Query: 370 DSKNGSLQHNAAFALYGL-ADNEDNVADLVRVGGVQ----KLQDGEFTVQP------TKD 418
+ ++Q A + + + A +D + +V G V L +F Q T
Sbjct: 310 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNY 369
Query: 419 CVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHL 461
T++++ VH ++ L+ LL D + + + A++++
Sbjct: 370 TSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 412
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 134/293 (45%), Gaps = 24/293 (8%)
Query: 88 IVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPE-HQQIIVDTGALP 146
+VD GA+PA + L +P + H + ++ +ALG +A + +++ GA+
Sbjct: 88 VVDGGAIPAFISLLASP---------HAH-ISEQAVWALGNIAGDGSAFRDLVIKHGAID 137
Query: 147 HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD 206
L++LL S G +R ++NL VE +P LV LL D
Sbjct: 138 PLLALLAVPDL---STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND 194
Query: 207 VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSS 266
+V + A+ L +E +++V+ +P LV +L + + + A+ IGN+V +
Sbjct: 195 PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 254
Query: 267 PSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIE 326
++VI AGAL LL++ + ++EA + A + +V G V L+
Sbjct: 255 DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 314
Query: 327 MLQSPDSQLKEMSAFAL------GRLAQDTHNQAGIAQDGGILPLLKLLDSKN 373
+L D + ++ +A+A+ G + Q + + G I PL+ LL +K+
Sbjct: 315 VLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNLLSAKD 363
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 195 IPPLVELLKFVDVK-VQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHF 253
IP V L D +Q +A AL +A E K +V+ A+P + +L S A +
Sbjct: 51 IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 110
Query: 254 EAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLS 287
+AV +GN+ + + VI GA+ P++ LL+
Sbjct: 111 QAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 144
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 72/343 (20%), Positives = 141/343 (41%), Gaps = 30/343 (8%)
Query: 139 IVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDG-IPP 197
I+ G +P VS L + S + +A A+TN+A + +T+ V+ G IP
Sbjct: 45 IIRAGLIPKFVSFLGKTD-------CSPIQFESAWALTNIASGTSE-QTKAVVDGGAIPA 96
Query: 198 LVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVG 257
+ LL + A AL +A + L+++ A+ L+ +L D S A G
Sbjct: 97 FISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTL--ACG 154
Query: 258 VIGNLVHSSPSIKKEVILAGALQPV-------IGLLSSSCSESKREAALLLGQFAAADSN 310
+ NL + ++ + A L V + LL + E ++ + +
Sbjct: 155 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE 214
Query: 311 SKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLL-KLL 369
+V++G V L+++L + + + + A+G + T Q D G L + LL
Sbjct: 215 RIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 274
Query: 370 DSKNGSLQHNAAFALYGL-ADNEDNVADLVRVGGVQ----KLQDGEFTVQP------TKD 418
+ ++Q A + + + A +D + +V G V L +F Q T
Sbjct: 275 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNY 334
Query: 419 CVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHL 461
T++++ VH ++ L+ LL D + + + A++++
Sbjct: 335 TSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 377
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/293 (24%), Positives = 130/293 (44%), Gaps = 24/293 (8%)
Query: 88 IVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPE-HQQIIVDTGALP 146
+VD GA+PA + L +P + H + ++ +ALG +A + +++ GA+
Sbjct: 90 VVDGGAIPAFISLLASP---------HAH-ISEQAVWALGNIAGDGSVFRDLVIKYGAVD 139
Query: 147 HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD 206
L++LL S G +R ++NL VE +P LV LL D
Sbjct: 140 PLLALLAVPDM---SSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLLHHDD 196
Query: 207 VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSS 266
+V A+ L +E ++V+ +P LV +L + + + A+ IGN+V +
Sbjct: 197 PEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGNIVTGT 256
Query: 267 PSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIE 326
+ VI AGAL LL++ + ++EA + A + +V G V L+
Sbjct: 257 DEQTQVVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVS 316
Query: 327 MLQSPDSQLKEMSAFAL------GRLAQDTHNQAGIAQDGGILPLLKLLDSKN 373
+L D + ++ + +A+ G + Q + + G I PL+ LL +K+
Sbjct: 317 VLSKADFKTQKEAVWAVTNYTSGGTVEQIVY----LVHCGIIEPLMNLLTAKD 365
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 82/185 (44%), Gaps = 9/185 (4%)
Query: 195 IPPLVELLKFVDVK-VQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHF 253
IP V L D +Q +A AL +A E K +V+ A+P + +L S A +
Sbjct: 53 IPKFVSFLGRTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 112
Query: 254 EAVGVIGNLVHSSPSIKKEVILAGALQPVIGLL------SSSCSESKREAALLLGQFAAA 307
+AV +GN+ + VI GA+ P++ LL S +C + L
Sbjct: 113 QAVWALGNIAGDGSVFRDLVIKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNK 172
Query: 308 DSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILP-LL 366
+ + V++ + L+ +L D ++ + +A+ L + + G+ G++P L+
Sbjct: 173 NPAPPIDAVEQ-ILPTLVRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLV 231
Query: 367 KLLDS 371
KLL +
Sbjct: 232 KLLGA 236
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 71/335 (21%), Positives = 132/335 (39%), Gaps = 36/335 (10%)
Query: 139 IVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDG-IPP 197
I+ G +P VS L + S + +A A+TN+A + +T+ V+ G IP
Sbjct: 47 IIRAGLIPKFVSFLGRTD-------CSPIQFESAWALTNIASGTSE-QTKAVVDGGAIPA 98
Query: 198 LVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVG 257
+ LL + A AL +A + L+++ A+ L+ +L D S A G
Sbjct: 99 FISLLASPHAHISEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLALLAVPDMSSL--ACG 156
Query: 258 VIGNLVHS----------SPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAA 307
+ NL + +P I + L ++ LL E + +
Sbjct: 157 YLRNLTWTLSNLCRNKNPAPPIDA---VEQILPTLVRLLHHDDPEVLADTCWAISYLTDG 213
Query: 308 DSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLL- 366
+ +V+ G V L+++L + + + + A+G + T Q + D G L +
Sbjct: 214 PNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGNIVTGTDEQTQVVIDAGALAVFP 273
Query: 367 KLLDSKNGSLQHNAAFALYGL-ADNEDNVADLVRVG----GVQKLQDGEFTVQP------ 415
LL + ++Q A + + + A +D + +V G V L +F Q
Sbjct: 274 SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVSVLSKADFKTQKEAVWAV 333
Query: 416 TKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAV 450
T T++++ VH ++ L+ LL D +
Sbjct: 334 TNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKI 368
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 95/191 (49%), Gaps = 1/191 (0%)
Query: 195 IPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFE 254
+P +V+ L D + ++A L +A +E + +++ ALP LV +L S + + E
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 255 AVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVH 314
A+ + N+ + VI AGAL ++ LLSS + +EA L A+ +
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133
Query: 315 IVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSK-N 373
++ GA+ L+++L SP+ Q+ + + +AL +A + Q ++ G P L+ L S N
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQLQSSPN 193
Query: 374 GSLQHNAAFAL 384
+Q A AL
Sbjct: 194 EKIQKEAQEAL 204
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 22/177 (12%)
Query: 81 NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQ-QII 139
NE+I + ++D GA+PALV+ L +P ++ +E +AL +A Q Q +
Sbjct: 44 NEQIQA-VIDAGALPALVQLLSSP----------NEQILQEALWALSNIASGGNEQIQAV 92
Query: 140 VDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDG-IPPL 198
+D GALP LV LL S +++ A A++N+A N + + ++ G +P L
Sbjct: 93 IDAGALPALVQLL--------SSPNEQILQEALWALSNIAS-GGNEQIQAVIDAGALPAL 143
Query: 199 VELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEA 255
V+LL + ++ + A AL +A +E K+ + E A P L + S + + EA
Sbjct: 144 VQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQLQSSPNEKIQKEA 200
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 103/204 (50%), Gaps = 12/204 (5%)
Query: 145 LPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDG-IPPLVELLK 203
LP +V Q N + + L +R+ ++ +A N + + ++ G +P LV+LL
Sbjct: 14 LPQMV----QQLNSPDQQELQSALRK----LSQIAS-GGNEQIQAVIDAGALPALVQLLS 64
Query: 204 FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLV 263
+ ++ + A AL +A +E + +++ ALP LV +L S + + EA+ + N+
Sbjct: 65 SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 124
Query: 264 HSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRP 323
+ VI AGAL ++ LLSS + +EA L A+ + K + + GA P
Sbjct: 125 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGA-EP 183
Query: 324 LIEMLQ-SPDSQLKEMSAFALGRL 346
+E LQ SP+ ++++ + AL ++
Sbjct: 184 ALEQLQSSPNEKIQKEAQEALEKI 207
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 97/194 (50%), Gaps = 1/194 (0%)
Query: 195 IPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFE 254
+P +V+ L D + ++A L +A +E + +++ ALP LV +L S + + E
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 255 AVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVH 314
A+ + N+ + VI AGAL ++ LLSS + +EA L A+ +
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133
Query: 315 IVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDS-KN 373
++ GA+ L+++L SP+ Q+ + + +AL +A + Q ++ G L L+ L S +N
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN 193
Query: 374 GSLQHNAAFALYGL 387
+Q A AL L
Sbjct: 194 EKIQKEAQEALEKL 207
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 22/177 (12%)
Query: 81 NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQ-QII 139
NE+I + ++D GA+PALV+ L +P ++ +E +AL +A Q Q +
Sbjct: 44 NEQIQA-VIDAGALPALVQLLSSP----------NEQILQEALWALSNIASGGNEQIQAV 92
Query: 140 VDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDG-IPPL 198
+D GALP LV LL S +++ A A++N+A N + + ++ G +P L
Sbjct: 93 IDAGALPALVQLL--------SSPNEQILQEALWALSNIAS-GGNEQIQAVIDAGALPAL 143
Query: 199 VELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEA 255
V+LL + ++ + A AL +A +E K+ + E AL L + E+ + EA
Sbjct: 144 VQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEA 200
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 92/187 (49%), Gaps = 11/187 (5%)
Query: 145 LPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDG-IPPLVELLK 203
LP +V Q N + + L +R+ ++ +A N + + ++ G +P LV+LL
Sbjct: 14 LPQMV----QQLNSPDQQELQSALRK----LSQIAS-GGNEQIQAVIDAGALPALVQLLS 64
Query: 204 FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLV 263
+ ++ + A AL +A +E + +++ ALP LV +L S + + EA+ + N+
Sbjct: 65 SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 124
Query: 264 HSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRP 323
+ VI AGAL ++ LLSS + +EA L A+ + K + + GA+
Sbjct: 125 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEK 184
Query: 324 LIEMLQS 330
L E LQS
Sbjct: 185 L-EQLQS 190
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 95/194 (48%), Gaps = 1/194 (0%)
Query: 195 IPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFE 254
+P + + L D++ Q +A + +E + +++ ALP LV +L S + + E
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 255 AVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVH 314
A+ + N+ + VI AGAL ++ LLSS + +EA L A+ +
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133
Query: 315 IVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDS-KN 373
++ GA+ L+++L SP+ Q+ + + +AL +A + Q ++ G L L+ L S +N
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN 193
Query: 374 GSLQHNAAFALYGL 387
+Q A AL L
Sbjct: 194 EKIQKEAQEALEKL 207
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 100/204 (49%), Gaps = 22/204 (10%)
Query: 54 LNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIP 113
+ + +SD+ + T + + NE+I + ++D GA+PALV+ L +P N QI
Sbjct: 17 MTQQLNSDDMQEQLSATRKFSQILSDGNEQIQA-VIDAGALPALVQLLSSP----NEQIL 71
Query: 114 YEHEVEKECAFALGLLAVKPEHQ-QIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAA 172
+E +AL +A Q Q ++D GALP LV LL S +++ A
Sbjct: 72 ------QEALWALSNIASGGNEQIQAVIDAGALPALVQLL--------SSPNEQILQEAL 117
Query: 173 DAITNLAHENANIKTRVRVEDG-IPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLI 231
A++N+A N + + ++ G +P LV+LL + ++ + A AL +A +E K+ +
Sbjct: 118 WALSNIAS-GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAV 176
Query: 232 VECNALPTLVLMLRSEDASVHFEA 255
E AL L + E+ + EA
Sbjct: 177 KEAGALEKLEQLQSHENEKIQKEA 200
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 77/150 (51%), Gaps = 2/150 (1%)
Query: 182 NANIKTRVRVEDG-IPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTL 240
+ N + + ++ G +P LV+LL + ++ + A AL +A +E + +++ ALP L
Sbjct: 42 DGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPAL 101
Query: 241 VLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALL 300
V +L S + + EA+ + N+ + VI AGAL ++ LLSS + +EA
Sbjct: 102 VQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA 161
Query: 301 LGQFAAADSNSKVHIVQRGAVRPLIEMLQS 330
L A+ + K + + GA+ L E LQS
Sbjct: 162 LSNIASGGNEQKQAVKEAGALEKL-EQLQS 190
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 20/141 (14%)
Query: 81 NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQ-QII 139
NE+I + ++D GA+PALV+ L +P N QI +E +AL +A Q Q +
Sbjct: 86 NEQIQA-VIDAGALPALVQLLSSP----NEQIL------QEALWALSNIASGGNEQIQAV 134
Query: 140 VDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLV 199
+D GALP LV LL S +++ A A++N+A K V+ + L
Sbjct: 135 IDAGALPALVQLL--------SSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLE 186
Query: 200 ELLKFVDVKVQRAAAGALRTL 220
+L + K+Q+ A AL L
Sbjct: 187 QLQSHENEKIQKEAQEALEKL 207
>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|C Chain C, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|D Chain D, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
Length = 172
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 67/130 (51%)
Query: 532 NPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMM 591
N +D V G++F AH+ L A S F A F+ +E VEI ++ VF+
Sbjct: 31 NSRFTDCCLCVAGQEFQAHKAILAARSPVFSAXFEHEXEESKKNRVEINDVEPEVFKEXX 90
Query: 592 RFIYTGNVDVSVDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNAT 651
FIYTG A DLL AAD+Y LE LK CE ++ +SVEN + L++ ++A
Sbjct: 91 CFIYTGKAPNLDKXADDLLAAADKYALERLKVXCEDALCSNLSVENAAEILILADLHSAD 150
Query: 652 TLKQSCILFI 661
LK + FI
Sbjct: 151 QLKTQAVDFI 160
>pdb|3L6X|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-Cadherin
pdb|3L6Y|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|C Chain C, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|E Chain E, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
Length = 584
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Query: 164 LSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFK 223
L V AA + +L + N +KT VR GIP LV LL +V A GAL+ ++F
Sbjct: 61 LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFG 120
Query: 224 NDENKKLIVE-CNALPTLVLMLR-SEDASVHFEAVGVIGNLVHSSPSIKKEVI 274
D++ K+ ++ C+ +P LV +LR + D + G + NL S SIK E++
Sbjct: 121 RDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNL-SSHDSIKMEIV 172
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%)
Query: 195 IPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFE 254
+P ++ +L F V+ AA L+ L ++ND+ K + + +P LV +L VH
Sbjct: 50 LPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLG 109
Query: 255 AVGVIGNL 262
A G + N+
Sbjct: 110 ACGALKNI 117
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 23/167 (13%)
Query: 149 VSLLKQYKNGGNSRALSGVIRRAADAITNLAHENAN----IKTRVRVEDGIPPLVELLKF 204
+SLLK+ K ++ +A AI NL I++ +R E + + +LL
Sbjct: 314 ISLLKESKT-------PAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTN 366
Query: 205 VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRS--EDASVHFEAVGVIGNL 262
+V +AA+GALR LA D K ++ +A+P LV L +++S +F VI L
Sbjct: 367 EHERVVKAASGALRNLAV--DARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISIL 424
Query: 263 VHSSPSIKKEVILAGALQPVIG-----LLSSSCSESKRE---AALLL 301
+ I + + A L+ G L++ S + S++E AAL+L
Sbjct: 425 NTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVL 471
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 79/354 (22%), Positives = 146/354 (41%), Gaps = 36/354 (10%)
Query: 71 ASHALVEFAKNEEI-VSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLL 129
A+ AL A ++VD AVP ++ L T EV+++ +ALG +
Sbjct: 151 AAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG----------SVEVKEQAIWALGNV 200
Query: 130 AV-KPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTR 188
A +++ ++ A+ ++ L K +IR A ++NL
Sbjct: 201 AGDSTDYRDYVLQCNAMEPILGLFNSNK--------PSLIRTATWTLSNLCRGKKPQPDW 252
Query: 189 VRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSED 248
V +P L +L+ +D + A A+ L+ E + +++ LV +L E
Sbjct: 253 SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES 312
Query: 249 ASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAAD 308
V A+ +GN+V + + VI AG L + LLSS K+EA + A +
Sbjct: 313 TLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN 372
Query: 309 SNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGI----AQDGGILP 364
+ ++ + PL+++L+ + + K+ + +A+ + + I G I P
Sbjct: 373 TEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKP 432
Query: 365 LLKLLDSKNGSLQHNAAFAL-----YGLADNE------DNVADLV-RVGGVQKL 406
L LL+ + + AL G AD E + AD + + GG++K+
Sbjct: 433 LCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKI 486
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/233 (21%), Positives = 109/233 (46%), Gaps = 9/233 (3%)
Query: 138 IIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVE-DGIP 196
+++ G +P LV +++ N + + AA A+TN+A + +T+V V+ D +P
Sbjct: 125 VVIQAGVVPRLVEFMRE-----NQPEMLQL--EAAWALTNIAS-GTSAQTKVVVDADAVP 176
Query: 197 PLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAV 256
++LL V+V+ A AL +A + + + +++CNA+ ++ + S S+ A
Sbjct: 177 LFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTAT 236
Query: 257 GVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIV 316
+ NL +++ AL + L+ S +E+ +A + + + ++
Sbjct: 237 WTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVI 296
Query: 317 QRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLL 369
+ L+E+L + ++ + A+G + Q + + G+LP L+LL
Sbjct: 297 DVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLL 349
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 83/414 (20%), Positives = 161/414 (38%), Gaps = 30/414 (7%)
Query: 36 SGATQQDLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVP 95
S + Q ++ ++ + + +SD+ + T + ++ + +++ G VP
Sbjct: 74 SVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVP 133
Query: 96 ALVEHL-QTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQ-QIIVDTGALPHLVSLLK 153
LVE + + P++ ++ E A+AL +A Q +++VD A+P + LL
Sbjct: 134 RLVEFMRENQPEM----------LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL- 182
Query: 154 QYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAA 213
Y V +A A+ N+A ++ + + V + + P++ L + R A
Sbjct: 183 -YTGSVE------VKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTA 235
Query: 214 AGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEV 273
L L V ALPTL ++ S D +A I L + V
Sbjct: 236 TWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAV 295
Query: 274 ILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDS 333
I + ++ LLS + + A +G + ++ G + L +L SP
Sbjct: 296 IDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKE 355
Query: 334 QLKEMSAFALGRLAQDTHNQAGIAQDGGIL-PLLKLLDSKNGSLQHNAAFALYGLADNED 392
+K+ + + + + Q D ++ PL+KLL+ + A +A+ +
Sbjct: 356 NIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGL 415
Query: 393 NVADLVRV----GGVQKLQD-----GEFTVQPTKDCVARTLKRLEEKVHGRVLN 437
D++R G ++ L D ++ T D + LK E R LN
Sbjct: 416 QRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLN 469
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 79/354 (22%), Positives = 146/354 (41%), Gaps = 36/354 (10%)
Query: 71 ASHALVEFAKNEEI-VSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLL 129
A+ AL A ++VD AVP ++ L T EV+++ +ALG +
Sbjct: 65 AAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG----------SVEVKEQAIWALGNV 114
Query: 130 AV-KPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTR 188
A +++ ++ A+ ++ L K +IR A ++NL
Sbjct: 115 AGDSTDYRDYVLQCNAMEPILGLFNSNK--------PSLIRTATWTLSNLCRGKKPQPDW 166
Query: 189 VRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSED 248
V +P L +L+ +D + A A+ L+ E + +++ LV +L E
Sbjct: 167 SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES 226
Query: 249 ASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAAD 308
V A+ +GN+V + + VI AG L + LLSS K+EA + A +
Sbjct: 227 TLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN 286
Query: 309 SNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGI----AQDGGILP 364
+ ++ + PL+++L+ + + K+ + +A+ + + I G I P
Sbjct: 287 TEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKP 346
Query: 365 LLKLLDSKNGSLQHNAAFAL-----YGLADNE------DNVADLV-RVGGVQKL 406
L LL+ + + AL G AD E + AD + + GG++K+
Sbjct: 347 LCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKI 400
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 108/233 (46%), Gaps = 9/233 (3%)
Query: 138 IIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVE-DGIP 196
+++ G +P LV +++ N L AA A+TN+A + +T+V V+ D +P
Sbjct: 39 VVIQAGVVPRLVEFMRE--NQPEMLQL-----EAAWALTNIAS-GTSAQTKVVVDADAVP 90
Query: 197 PLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAV 256
++LL V+V+ A AL +A + + + +++CNA+ ++ + S S+ A
Sbjct: 91 LFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTAT 150
Query: 257 GVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIV 316
+ NL +++ AL + L+ S +E+ +A + + + ++
Sbjct: 151 WTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVI 210
Query: 317 QRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLL 369
+ L+E+L + ++ + A+G + Q + + G+LP L+LL
Sbjct: 211 DVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLL 263
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 83/396 (20%), Positives = 154/396 (38%), Gaps = 30/396 (7%)
Query: 54 LNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHL-QTPPQLTNAQI 112
+ + +SD+ + T + ++ + +++ G VP LVE + + P++
Sbjct: 6 MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM----- 60
Query: 113 PYEHEVEKECAFALGLLAVKPEHQ-QIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRA 171
++ E A+AL +A Q +++VD A+P + LL Y V +A
Sbjct: 61 -----LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL--YTGSVE------VKEQA 107
Query: 172 ADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLI 231
A+ N+A ++ + + V + + P++ L + R A L L
Sbjct: 108 IWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWS 167
Query: 232 VECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCS 291
V ALPTL ++ S D +A I L + VI + ++ LLS +
Sbjct: 168 VVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHEST 227
Query: 292 ESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTH 351
+ A +G + ++ G + L +L SP +K+ + + + +
Sbjct: 228 LVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNT 287
Query: 352 NQAGIAQDGGIL-PLLKLLDSKNGSLQHNAAFAL----YGLADNEDNVADLVRVGGVQKL 406
Q D ++ PL+KLL+ + A +A+ G D + LV G ++ L
Sbjct: 288 EQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPL 347
Query: 407 QD-----GEFTVQPTKDCVARTLKRLEEKVHGRVLN 437
D ++ T D + LK E R LN
Sbjct: 348 CDLLEIADNRIIEVTLDALENILKMGEADKEARGLN 383
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 79/354 (22%), Positives = 146/354 (41%), Gaps = 36/354 (10%)
Query: 71 ASHALVEFAKNEEI-VSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLL 129
A+ AL A ++VD AVP ++ L T EV+++ +ALG +
Sbjct: 64 AAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG----------SVEVKEQAIWALGNV 113
Query: 130 AV-KPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTR 188
A +++ ++ A+ ++ L K +IR A ++NL
Sbjct: 114 AGDSTDYRDYVLQCNAMEPILGLFNSNK--------PSLIRTATWTLSNLCRGKKPQPDW 165
Query: 189 VRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSED 248
V +P L +L+ +D + A A+ L+ E + +++ LV +L E
Sbjct: 166 SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES 225
Query: 249 ASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAAD 308
V A+ +GN+V + + VI AG L + LLSS K+EA + A +
Sbjct: 226 TLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN 285
Query: 309 SNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGI----AQDGGILP 364
+ ++ + PL+++L+ + + K+ + +A+ + + I G I P
Sbjct: 286 TEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKP 345
Query: 365 LLKLLDSKNGSLQHNAAFAL-----YGLADNE------DNVADLV-RVGGVQKL 406
L LL+ + + AL G AD E + AD + + GG++K+
Sbjct: 346 LCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKI 399
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/233 (21%), Positives = 109/233 (46%), Gaps = 9/233 (3%)
Query: 138 IIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVE-DGIP 196
+++ G +P LV +++ N + + AA A+TN+A + +T+V V+ D +P
Sbjct: 38 VVIQAGVVPRLVEFMRE-----NQPEMLQL--EAAWALTNIAS-GTSAQTKVVVDADAVP 89
Query: 197 PLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAV 256
++LL V+V+ A AL +A + + + +++CNA+ ++ + S S+ A
Sbjct: 90 LFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTAT 149
Query: 257 GVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIV 316
+ NL +++ AL + L+ S +E+ +A + + + ++
Sbjct: 150 WTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVI 209
Query: 317 QRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLL 369
+ L+E+L + ++ + A+G + Q + + G+LP L+LL
Sbjct: 210 DVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLL 262
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 83/396 (20%), Positives = 154/396 (38%), Gaps = 30/396 (7%)
Query: 54 LNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHL-QTPPQLTNAQI 112
+ + +SD+ + T + ++ + +++ G VP LVE + + P++
Sbjct: 5 MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM----- 59
Query: 113 PYEHEVEKECAFALGLLAVKPEHQ-QIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRA 171
++ E A+AL +A Q +++VD A+P + LL Y V +A
Sbjct: 60 -----LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL--YTGSVE------VKEQA 106
Query: 172 ADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLI 231
A+ N+A ++ + + V + + P++ L + R A L L
Sbjct: 107 IWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWS 166
Query: 232 VECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCS 291
V ALPTL ++ S D +A I L + VI + ++ LLS +
Sbjct: 167 VVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHEST 226
Query: 292 ESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTH 351
+ A +G + ++ G + L +L SP +K+ + + + +
Sbjct: 227 LVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNT 286
Query: 352 NQAGIAQDGGIL-PLLKLLDSKNGSLQHNAAFAL----YGLADNEDNVADLVRVGGVQKL 406
Q D ++ PL+KLL+ + A +A+ G D + LV G ++ L
Sbjct: 287 EQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPL 346
Query: 407 QD-----GEFTVQPTKDCVARTLKRLEEKVHGRVLN 437
D ++ T D + LK E R LN
Sbjct: 347 CDLLEIADNRIIEVTLDALENILKMGEADKEARGLN 382
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 79/354 (22%), Positives = 146/354 (41%), Gaps = 36/354 (10%)
Query: 71 ASHALVEFAKNEEI-VSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLL 129
A+ AL A ++VD AVP ++ L T EV+++ +ALG +
Sbjct: 65 AAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG----------SVEVKEQAIWALGNV 114
Query: 130 AV-KPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTR 188
A +++ ++ A+ ++ L K +IR A ++NL
Sbjct: 115 AGDSTDYRDYVLQCNAMEPILGLFNSNK--------PSLIRTATWTLSNLCRGKKPQPDW 166
Query: 189 VRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSED 248
V +P L +L+ +D + A A+ L+ E + +++ LV +L E
Sbjct: 167 SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES 226
Query: 249 ASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAAD 308
V A+ +GN+V + + VI AG L + LLSS K+EA + A +
Sbjct: 227 TLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN 286
Query: 309 SNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGI----AQDGGILP 364
+ ++ + PL+++L+ + + K+ + +A+ + + I G I P
Sbjct: 287 TEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKP 346
Query: 365 LLKLLDSKNGSLQHNAAFAL-----YGLADNE------DNVADLV-RVGGVQKL 406
L LL+ + + AL G AD E + AD + + GG++K+
Sbjct: 347 LCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKI 400
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/233 (21%), Positives = 109/233 (46%), Gaps = 9/233 (3%)
Query: 138 IIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVE-DGIP 196
+++ G +P LV +++ N + + AA A+TN+A + +T+V V+ D +P
Sbjct: 39 VVIQAGVVPRLVEFMRE-----NQPEMLQL--EAAWALTNIAS-GTSAQTKVVVDADAVP 90
Query: 197 PLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAV 256
++LL V+V+ A AL +A + + + +++CNA+ ++ + S S+ A
Sbjct: 91 LFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTAT 150
Query: 257 GVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIV 316
+ NL +++ AL + L+ S +E+ +A + + + ++
Sbjct: 151 WTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVI 210
Query: 317 QRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLL 369
+ L+E+L + ++ + A+G + Q + + G+LP L+LL
Sbjct: 211 DVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLL 263
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 83/396 (20%), Positives = 154/396 (38%), Gaps = 30/396 (7%)
Query: 54 LNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHL-QTPPQLTNAQI 112
+ + +SD+ + T + ++ + +++ G VP LVE + + P++
Sbjct: 6 MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM----- 60
Query: 113 PYEHEVEKECAFALGLLAVKPEHQ-QIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRA 171
++ E A+AL +A Q +++VD A+P + LL Y V +A
Sbjct: 61 -----LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL--YTGSVE------VKEQA 107
Query: 172 ADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLI 231
A+ N+A ++ + + V + + P++ L + R A L L
Sbjct: 108 IWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWS 167
Query: 232 VECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCS 291
V ALPTL ++ S D +A I L + VI + ++ LLS +
Sbjct: 168 VVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHEST 227
Query: 292 ESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTH 351
+ A +G + ++ G + L +L SP +K+ + + + +
Sbjct: 228 LVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNT 287
Query: 352 NQAGIAQDGGIL-PLLKLLDSKNGSLQHNAAFAL----YGLADNEDNVADLVRVGGVQKL 406
Q D ++ PL+KLL+ + A +A+ G D + LV G ++ L
Sbjct: 288 EQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPL 347
Query: 407 QD-----GEFTVQPTKDCVARTLKRLEEKVHGRVLN 437
D ++ T D + LK E R LN
Sbjct: 348 CDLLEIADNRIIEVTLDALENILKMGEADKEARGLN 383
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 79/354 (22%), Positives = 146/354 (41%), Gaps = 36/354 (10%)
Query: 71 ASHALVEFAKNEEI-VSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLL 129
A+ AL A ++VD AVP ++ L T EV+++ +ALG +
Sbjct: 64 AAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG----------SVEVKEQAIWALGNV 113
Query: 130 AV-KPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTR 188
A +++ ++ A+ ++ L K +IR A ++NL
Sbjct: 114 AGDSTDYRDYVLQCNAMEPILGLFNSNK--------PSLIRTATWTLSNLCRGKKPQPDW 165
Query: 189 VRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSED 248
V +P L +L+ +D + A A+ L+ E + +++ LV +L E
Sbjct: 166 SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES 225
Query: 249 ASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAAD 308
V A+ +GN+V + + VI AG L + LLSS K+EA + A +
Sbjct: 226 TLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN 285
Query: 309 SNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGI----AQDGGILP 364
+ ++ + PL+++L+ + + K+ + +A+ + + I G I P
Sbjct: 286 TEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKP 345
Query: 365 LLKLLDSKNGSLQHNAAFAL-----YGLADNE------DNVADLV-RVGGVQKL 406
L LL+ + + AL G AD E + AD + + GG++K+
Sbjct: 346 LCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKI 399
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/233 (21%), Positives = 109/233 (46%), Gaps = 9/233 (3%)
Query: 138 IIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVE-DGIP 196
+++ G +P LV +++ N + + AA A+TN+A + +T+V V+ D +P
Sbjct: 38 VVIQAGVVPRLVEFMRE-----NQPEMLQL--EAAWALTNIAS-GTSAQTKVVVDADAVP 89
Query: 197 PLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAV 256
++LL V+V+ A AL +A + + + +++CNA+ ++ + S S+ A
Sbjct: 90 LFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTAT 149
Query: 257 GVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIV 316
+ NL +++ AL + L+ S +E+ +A + + + ++
Sbjct: 150 WTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVI 209
Query: 317 QRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLL 369
+ L+E+L + ++ + A+G + Q + + G+LP L+LL
Sbjct: 210 DVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLL 262
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 83/396 (20%), Positives = 154/396 (38%), Gaps = 30/396 (7%)
Query: 54 LNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHL-QTPPQLTNAQI 112
+ + +SD+ + T + ++ + +++ G VP LVE + + P++
Sbjct: 5 MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM----- 59
Query: 113 PYEHEVEKECAFALGLLAVKPEHQ-QIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRA 171
++ E A+AL +A Q +++VD A+P + LL Y V +A
Sbjct: 60 -----LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL--YTGSVE------VKEQA 106
Query: 172 ADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLI 231
A+ N+A ++ + + V + + P++ L + R A L L
Sbjct: 107 IWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWS 166
Query: 232 VECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCS 291
V ALPTL ++ S D +A I L + VI + ++ LLS +
Sbjct: 167 VVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHEST 226
Query: 292 ESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTH 351
+ A +G + ++ G + L +L SP +K+ + + + +
Sbjct: 227 LVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNT 286
Query: 352 NQAGIAQDGGIL-PLLKLLDSKNGSLQHNAAFAL----YGLADNEDNVADLVRVGGVQKL 406
Q D ++ PL+KLL+ + A +A+ G D + LV G ++ L
Sbjct: 287 EQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPL 346
Query: 407 QD-----GEFTVQPTKDCVARTLKRLEEKVHGRVLN 437
D ++ T D + LK E R LN
Sbjct: 347 CDLLEIADNRIIEVTLDALENILKMGEADKEARGLN 382
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 79/354 (22%), Positives = 146/354 (41%), Gaps = 36/354 (10%)
Query: 71 ASHALVEFAKNEEI-VSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLL 129
A+ AL A ++VD AVP ++ L T EV+++ +ALG +
Sbjct: 63 AAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG----------SVEVKEQAIWALGNV 112
Query: 130 AV-KPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTR 188
A +++ ++ A+ ++ L K +IR A ++NL
Sbjct: 113 AGDSTDYRDYVLQCNAMEPILGLFNSNK--------PSLIRTATWTLSNLCRGKKPQPDW 164
Query: 189 VRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSED 248
V +P L +L+ +D + A A+ L+ E + +++ LV +L E
Sbjct: 165 SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES 224
Query: 249 ASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAAD 308
V A+ +GN+V + + VI AG L + LLSS K+EA + A +
Sbjct: 225 TLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN 284
Query: 309 SNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGI----AQDGGILP 364
+ ++ + PL+++L+ + + K+ + +A+ + + I G I P
Sbjct: 285 TEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKP 344
Query: 365 LLKLLDSKNGSLQHNAAFAL-----YGLADNE------DNVADLV-RVGGVQKL 406
L LL+ + + AL G AD E + AD + + GG++K+
Sbjct: 345 LCDLLEIADNRIIEVTLDALENIIKMGEADKEARGLNINENADFIEKAGGMEKI 398
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/233 (21%), Positives = 109/233 (46%), Gaps = 9/233 (3%)
Query: 138 IIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVE-DGIP 196
+++ G +P LV +++ N + + AA A+TN+A + +T+V V+ D +P
Sbjct: 37 VVIQAGVVPRLVEFMRE-----NQPEMLQL--EAAWALTNIAS-GTSAQTKVVVDADAVP 88
Query: 197 PLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAV 256
++LL V+V+ A AL +A + + + +++CNA+ ++ + S S+ A
Sbjct: 89 LFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTAT 148
Query: 257 GVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIV 316
+ NL +++ AL + L+ S +E+ +A + + + ++
Sbjct: 149 WTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVI 208
Query: 317 QRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLL 369
+ L+E+L + ++ + A+G + Q + + G+LP L+LL
Sbjct: 209 DVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLL 261
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 79/354 (22%), Positives = 146/354 (41%), Gaps = 36/354 (10%)
Query: 71 ASHALVEFAKNEEI-VSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLL 129
A+ AL A ++VD AVP ++ L T EV+++ +ALG +
Sbjct: 63 AAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG----------SVEVKEQAIWALGNV 112
Query: 130 AV-KPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTR 188
A +++ ++ A+ ++ L K +IR A ++NL
Sbjct: 113 AGDSTDYRDYVLQCNAMEPILGLFNSNK--------PSLIRTATWTLSNLCRGKKPQPDW 164
Query: 189 VRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSED 248
V +P L +L+ +D + A A+ L+ E + +++ LV +L E
Sbjct: 165 SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES 224
Query: 249 ASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAAD 308
V A+ +GN+V + + VI AG L + LLSS K+EA + A +
Sbjct: 225 TLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN 284
Query: 309 SNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGI----AQDGGILP 364
+ ++ + PL+++L+ + + K+ + +A+ + + I G I P
Sbjct: 285 TEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKP 344
Query: 365 LLKLLDSKNGSLQHNAAFAL-----YGLADNE------DNVADLV-RVGGVQKL 406
L LL+ + + AL G AD E + AD + + GG++K+
Sbjct: 345 LCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKI 398
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 108/233 (46%), Gaps = 9/233 (3%)
Query: 138 IIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVE-DGIP 196
+++ G +P LV +++ N L AA A+TN+A + +T+V V+ D +P
Sbjct: 37 VVIQAGVVPRLVEFMRE--NQPEMLQL-----EAAWALTNIAS-GTSAQTKVVVDADAVP 88
Query: 197 PLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAV 256
++LL V+V+ A AL +A + + + +++CNA+ ++ + S S+ A
Sbjct: 89 LFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTAT 148
Query: 257 GVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIV 316
+ NL +++ AL + L+ S +E+ +A + + + ++
Sbjct: 149 WTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVI 208
Query: 317 QRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLL 369
+ L+E+L + ++ + A+G + Q + + G+LP L+LL
Sbjct: 209 DVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLL 261
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 83/396 (20%), Positives = 154/396 (38%), Gaps = 30/396 (7%)
Query: 54 LNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHL-QTPPQLTNAQI 112
+ + +SD+ + T + ++ + +++ G VP LVE + + P++
Sbjct: 4 MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM----- 58
Query: 113 PYEHEVEKECAFALGLLAVKPEHQ-QIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRA 171
++ E A+AL +A Q +++VD A+P + LL Y V +A
Sbjct: 59 -----LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL--YTGSVE------VKEQA 105
Query: 172 ADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLI 231
A+ N+A ++ + + V + + P++ L + R A L L
Sbjct: 106 IWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWS 165
Query: 232 VECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCS 291
V ALPTL ++ S D +A I L + VI + ++ LLS +
Sbjct: 166 VVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHEST 225
Query: 292 ESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTH 351
+ A +G + ++ G + L +L SP +K+ + + + +
Sbjct: 226 LVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNT 285
Query: 352 NQAGIAQDGGIL-PLLKLLDSKNGSLQHNAAFAL----YGLADNEDNVADLVRVGGVQKL 406
Q D ++ PL+KLL+ + A +A+ G D + LV G ++ L
Sbjct: 286 EQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPL 345
Query: 407 QD-----GEFTVQPTKDCVARTLKRLEEKVHGRVLN 437
D ++ T D + LK E R LN
Sbjct: 346 CDLLEIADNRIIEVTLDALENILKMGEADKEARGLN 381
>pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a
Resolution
pdb|4APF|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a
Resolution
Length = 297
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 10/152 (6%)
Query: 544 GKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEI------PNIRWNVFELMMRFIYTG 597
G++F AHR L A+++ F + G + E + VE+ P + E ++ ++YTG
Sbjct: 62 GREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTG 121
Query: 598 NVDVSVDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNATTLKQSC 657
+ VS ++L AD++LL LK C + + + + N + ++ L+ Y + L
Sbjct: 122 RIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLAHMYTLSQLALKA 181
Query: 658 ILFILEKFDKMRNKPWF----FRLIRCVLPEI 685
I F K+ F F LIR L ++
Sbjct: 182 ADMIRRNFHKVIQDEEFYTLPFHLIRDWLSDL 213
>pdb|3I3N|A Chain A, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
pdb|3I3N|B Chain B, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
Length = 279
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 69/152 (45%), Gaps = 10/152 (6%)
Query: 544 GKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEI------PNIRWNVFELMMRFIYTG 597
G++F AHR L A+++ F + G + E + VE P + E ++ + YTG
Sbjct: 44 GREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEXRKWSSEPGPEPDTVEAVIEYXYTG 103
Query: 598 NVDVSVDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNATTLKQSC 657
+ VS ++L AD++LL LK C + + + + N + ++ L+ Y + L
Sbjct: 104 RIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLAHXYTLSQLALKA 163
Query: 658 ILFILEKFDKMRNKPWF----FRLIRCVLPEI 685
I F K+ F F LIR L ++
Sbjct: 164 ADXIRRNFHKVIQDEEFYTLPFHLIRDWLSDL 195
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 102/225 (45%), Gaps = 3/225 (1%)
Query: 167 VIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFV-DVKVQRAAAGALRTLAFKND 225
V+ +AA + L+ + A+ +R + +V ++ DV+ R AG L L+ +
Sbjct: 31 VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 89
Query: 226 ENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGL 285
E I + +P LV ML S SV F A+ + NL+ K V LAG LQ ++ L
Sbjct: 90 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 149
Query: 286 LSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPD-SQLKEMSAFALG 344
L+ + + L A + SK+ I+ G + L+ ++++ +L ++ L
Sbjct: 150 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 209
Query: 345 RLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD 389
L+ + N+ I + GG+ L L + L N + L L+D
Sbjct: 210 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 254
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 84/345 (24%), Positives = 135/345 (39%), Gaps = 76/345 (22%)
Query: 88 IVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPH 147
IV+ G + AL HL P Q + + C + L L+ Q+ + G L
Sbjct: 221 IVEAGGMQALGLHLTDPSQ----------RLVQNCLWTLRNLSDAATKQEGM--EGLLGT 268
Query: 148 LVSLL--------------------KQYKNG------GNSRALSGVIRRAAD-------A 174
LV LL YKN G AL + RA D A
Sbjct: 269 LVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPA 328
Query: 175 ITNLAH------ENANIKTRVRVEDGIPPLVELLKF-VDVKVQRAAAGALRTLAFKNDEN 227
I L H E + VR+ G+P +V+LL + +A G +R LA N
Sbjct: 329 ICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL-CPAN 387
Query: 228 KKLIVECNALPTLV-LMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLL 286
+ E A+P LV L++R+ + ++G G ++ E I+ G
Sbjct: 388 HAPLREQGAIPRLVQLLVRAHQDTQRRTSMG--GTQQQFVEGVRMEEIVEG--------- 436
Query: 287 SSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRL 346
C+ AL A D ++++ I + +++L SP ++ ++A L L
Sbjct: 437 ---CT-----GAL---HILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL 485
Query: 347 AQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNE 391
AQD I +G PL +LL S+N + AA L+ +++++
Sbjct: 486 AQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK 530
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 6/115 (5%)
Query: 296 EAALLLGQFAAADSNSKVHIVQRG--AVRPLIEMLQSP-DSQLKEMSAFALGRLAQDTHN 352
+AA+++ Q + +++ H + R V ++ +Q+ D + +A L L+
Sbjct: 34 KAAVMVHQLSKKEASR--HAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG 91
Query: 353 QAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRV-GGVQKL 406
I + GGI L+K+L S S+ A L+ L +++ VR+ GG+QK+
Sbjct: 92 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKM 146
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 102/225 (45%), Gaps = 3/225 (1%)
Query: 167 VIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFV-DVKVQRAAAGALRTLAFKND 225
V+ +AA + L+ + A+ +R + +V ++ DV+ R AG L L+ +
Sbjct: 34 VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 92
Query: 226 ENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGL 285
E I + +P LV ML S SV F A+ + NL+ K V LAG LQ ++ L
Sbjct: 93 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 152
Query: 286 LSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPD-SQLKEMSAFALG 344
L+ + + L A + SK+ I+ G + L+ ++++ +L ++ L
Sbjct: 153 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 212
Query: 345 RLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD 389
L+ + N+ I + GG+ L L + L N + L L+D
Sbjct: 213 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 257
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 108/258 (41%), Gaps = 44/258 (17%)
Query: 155 YKNG------GNSRALSGVIRRAAD-------AITNLAH------ENANIKTRVRVEDGI 195
YKN G AL + RA D AI L H E + VR+ G+
Sbjct: 299 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGL 358
Query: 196 PPLVELLKF-VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLV-LMLRSEDASVHF 253
P +V+LL + +A G +R LA N + E A+P LV L++R+ +
Sbjct: 359 PVVVKLLHPPSHWPLIKATVGLIRNLAL-CPANHAPLREQGAIPRLVQLLVRAHQDTQRR 417
Query: 254 EAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKV 313
++G G ++ E I+ G C+ AL A D ++++
Sbjct: 418 TSMG--GTQQQFVEGVRMEEIVEG------------CT-----GAL---HILARDVHNRI 455
Query: 314 HIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKN 373
I + +++L SP ++ ++A L LAQD I +G PL +LL S+N
Sbjct: 456 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRN 515
Query: 374 GSLQHNAAFALYGLADNE 391
+ AA L+ +++++
Sbjct: 516 EGVATYAAAVLFRMSEDK 533
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 6/115 (5%)
Query: 296 EAALLLGQFAAADSNSKVHIVQRG--AVRPLIEMLQSP-DSQLKEMSAFALGRLAQDTHN 352
+AA+++ Q + +++ H + R V ++ +Q+ D + +A L L+
Sbjct: 37 KAAVMVHQLSKKEASR--HAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG 94
Query: 353 QAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRV-GGVQKL 406
I + GGI L+K+L S S+ A L+ L +++ VR+ GG+QK+
Sbjct: 95 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKM 149
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 102/225 (45%), Gaps = 3/225 (1%)
Query: 167 VIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFV-DVKVQRAAAGALRTLAFKND 225
V+ +AA + L+ + A+ +R + +V ++ DV+ R AG L L+ +
Sbjct: 36 VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 94
Query: 226 ENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGL 285
E I + +P LV ML S SV F A+ + NL+ K V LAG LQ ++ L
Sbjct: 95 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 154
Query: 286 LSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPD-SQLKEMSAFALG 344
L+ + + L A + SK+ I+ G + L+ ++++ +L ++ L
Sbjct: 155 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 214
Query: 345 RLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD 389
L+ + N+ I + GG+ L L + L N + L L+D
Sbjct: 215 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 259
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 108/258 (41%), Gaps = 44/258 (17%)
Query: 155 YKNG------GNSRALSGVIRRAAD-------AITNLAH------ENANIKTRVRVEDGI 195
YKN G AL + RA D AI L H E + VR+ G+
Sbjct: 301 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGL 360
Query: 196 PPLVELLKF-VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLV-LMLRSEDASVHF 253
P +V+LL + +A G +R LA N + E A+P LV L++R+ +
Sbjct: 361 PVVVKLLHPPSHWPLIKATVGLIRNLAL-CPANHAPLREQGAIPRLVQLLVRAHQDTQRR 419
Query: 254 EAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKV 313
++G G ++ E I+ G C+ AL A D ++++
Sbjct: 420 TSMG--GTQQQFVEGVRMEEIVEG------------CT-----GAL---HILARDVHNRI 457
Query: 314 HIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKN 373
I + +++L SP ++ ++A L LAQD I +G PL +LL S+N
Sbjct: 458 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRN 517
Query: 374 GSLQHNAAFALYGLADNE 391
+ AA L+ +++++
Sbjct: 518 EGVATYAAAVLFRMSEDK 535
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 6/115 (5%)
Query: 296 EAALLLGQFAAADSNSKVHIVQRG--AVRPLIEMLQSP-DSQLKEMSAFALGRLAQDTHN 352
+AA+++ Q + +++ H + R V ++ +Q+ D + +A L L+
Sbjct: 39 KAAVMVHQLSKKEASR--HAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG 96
Query: 353 QAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRV-GGVQKL 406
I + GGI L+K+L S S+ A L+ L +++ VR+ GG+QK+
Sbjct: 97 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKM 151
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 102/225 (45%), Gaps = 3/225 (1%)
Query: 167 VIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFV-DVKVQRAAAGALRTLAFKND 225
V+ +AA + L+ + A+ +R + +V ++ DV+ R AG L L+ +
Sbjct: 37 VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 95
Query: 226 ENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGL 285
E I + +P LV ML S SV F A+ + NL+ K V LAG LQ ++ L
Sbjct: 96 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 155
Query: 286 LSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPD-SQLKEMSAFALG 344
L+ + + L A + SK+ I+ G + L+ ++++ +L ++ L
Sbjct: 156 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 215
Query: 345 RLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD 389
L+ + N+ I + GG+ L L + L N + L L+D
Sbjct: 216 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 260
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 108/258 (41%), Gaps = 44/258 (17%)
Query: 155 YKNG------GNSRALSGVIRRAAD-------AITNLAH------ENANIKTRVRVEDGI 195
YKN G AL + RA D AI L H E + VR+ G+
Sbjct: 302 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGL 361
Query: 196 PPLVELLKF-VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLV-LMLRSEDASVHF 253
P +V+LL + +A G +R LA N + E A+P LV L++R+ +
Sbjct: 362 PVVVKLLHPPSHWPLIKATVGLIRNLAL-CPANHAPLREQGAIPRLVQLLVRAHQDTQRR 420
Query: 254 EAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKV 313
++G G ++ E I+ G C+ AL A D ++++
Sbjct: 421 TSMG--GTQQQFVEGVRMEEIVEG------------CT-----GAL---HILARDVHNRI 458
Query: 314 HIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKN 373
I + +++L SP ++ ++A L LAQD I +G PL +LL S+N
Sbjct: 459 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRN 518
Query: 374 GSLQHNAAFALYGLADNE 391
+ AA L+ +++++
Sbjct: 519 EGVATYAAAVLFRMSEDK 536
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 6/115 (5%)
Query: 296 EAALLLGQFAAADSNSKVHIVQRG--AVRPLIEMLQSP-DSQLKEMSAFALGRLAQDTHN 352
+AA+++ Q + +++ H + R V ++ +Q+ D + +A L L+
Sbjct: 40 KAAVMVHQLSKKEASR--HAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG 97
Query: 353 QAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRV-GGVQKL 406
I + GGI L+K+L S S+ A L+ L +++ VR+ GG+QK+
Sbjct: 98 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKM 152
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 101/225 (44%), Gaps = 3/225 (1%)
Query: 167 VIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFV-DVKVQRAAAGALRTLAFKND 225
V+ +AA + L+ + A+ +R + +V ++ DV+ R AG L L+
Sbjct: 30 VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR- 88
Query: 226 ENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGL 285
E I + +P LV ML S SV F A+ + NL+ K V LAG LQ ++ L
Sbjct: 89 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 148
Query: 286 LSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPD-SQLKEMSAFALG 344
L+ + + L A + SK+ I+ G + L+ ++++ +L ++ L
Sbjct: 149 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 208
Query: 345 RLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD 389
L+ + N+ I + GG+ L L + L N + L L+D
Sbjct: 209 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 253
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 105/248 (42%), Gaps = 38/248 (15%)
Query: 159 GNSRALSGVIRRAAD-------AITNLAH------ENANIKTRVRVEDGIPPLVELLKF- 204
G AL + RA D AI L H E + VR+ G+P +V+LL
Sbjct: 305 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP 364
Query: 205 VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLV-LMLRSEDASVHFEAVGVIGNLV 263
+ +A G +R LA N + E A+P LV L++R+ + ++G G
Sbjct: 365 SHWPLIKATVGLIRNLAL-CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG--GTQQ 421
Query: 264 HSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRP 323
++ E I+ G C+ AL A D ++++ I +
Sbjct: 422 QFVEGVRMEEIVEG------------CT-----GAL---HILARDVHNRIVIRGLNTIPL 461
Query: 324 LIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFA 383
+++L SP ++ ++A L LAQD I +G PL +LL S+N + AA
Sbjct: 462 FVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAV 521
Query: 384 LYGLADNE 391
L+ +++++
Sbjct: 522 LFRMSEDK 529
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 102/225 (45%), Gaps = 3/225 (1%)
Query: 167 VIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFV-DVKVQRAAAGALRTLAFKND 225
V+ +AA + L+ + A+ +R + +V ++ DV+ R AG L L+ +
Sbjct: 35 VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 93
Query: 226 ENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGL 285
E I + +P LV ML S SV F A+ + NL+ K V LAG LQ ++ L
Sbjct: 94 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 153
Query: 286 LSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPD-SQLKEMSAFALG 344
L+ + + L A + SK+ I+ G + L+ ++++ +L ++ L
Sbjct: 154 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 213
Query: 345 RLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD 389
L+ + N+ I + GG+ L L + L N + L L+D
Sbjct: 214 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 258
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 106/256 (41%), Gaps = 44/256 (17%)
Query: 155 YKNG------GNSRALSGVIRRAAD-------AITNLAH------ENANIKTRVRVEDGI 195
YKN G AL + RA D AI L H E + VR+ G+
Sbjct: 300 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGL 359
Query: 196 PPLVELLKF-VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLV-LMLRSEDASVHF 253
P +V+LL + +A G +R LA N + E A+P LV L++R+ +
Sbjct: 360 PVVVKLLHPPSHWPLIKATVGLIRNLAL-CPANHAPLREQGAIPRLVQLLVRAHQDTQRR 418
Query: 254 EAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKV 313
++G G ++ E I+ G C+ AL A D ++++
Sbjct: 419 TSMG--GTQQQFVEGVRMEEIVEG------------CT-----GAL---HILARDVHNRI 456
Query: 314 HIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKN 373
I + +++L SP ++ ++A L LAQD I +G PL +LL S+N
Sbjct: 457 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRN 516
Query: 374 GSLQHNAAFALYGLAD 389
+ AA L+ +++
Sbjct: 517 EGVATYAAAVLFRMSE 532
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 6/115 (5%)
Query: 296 EAALLLGQFAAADSNSKVHIVQRG--AVRPLIEMLQSP-DSQLKEMSAFALGRLAQDTHN 352
+AA+++ Q + +++ H + R V ++ +Q+ D + +A L L+
Sbjct: 38 KAAVMVHQLSKKEASR--HAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG 95
Query: 353 QAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRV-GGVQKL 406
I + GGI L+K+L S S+ A L+ L +++ VR+ GG+QK+
Sbjct: 96 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKM 150
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 102/225 (45%), Gaps = 3/225 (1%)
Query: 167 VIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFV-DVKVQRAAAGALRTLAFKND 225
V+ +AA + L+ + A+ +R + +V ++ DV+ R AG L L+ +
Sbjct: 35 VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 93
Query: 226 ENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGL 285
E I + +P LV ML S SV F A+ + NL+ K V LAG LQ ++ L
Sbjct: 94 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 153
Query: 286 LSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPD-SQLKEMSAFALG 344
L+ + + L A + SK+ I+ G + L+ ++++ +L ++ L
Sbjct: 154 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 213
Query: 345 RLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD 389
L+ + N+ I + GG+ L L + L N + L L+D
Sbjct: 214 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 258
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 107/257 (41%), Gaps = 44/257 (17%)
Query: 155 YKNG------GNSRALSGVIRRAAD-------AITNLAH------ENANIKTRVRVEDGI 195
YKN G AL + RA D AI L H E + VR+ G+
Sbjct: 300 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGL 359
Query: 196 PPLVELLKF-VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLV-LMLRSEDASVHF 253
P +V+LL + +A G +R LA N + E A+P LV L++R+ +
Sbjct: 360 PVVVKLLHPPSHWPLIKATVGLIRNLAL-CPANHAPLREQGAIPRLVQLLVRAHQDTQRR 418
Query: 254 EAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKV 313
++G G ++ E I+ G C+ AL A D ++++
Sbjct: 419 TSMG--GTQQQFVEGVRMEEIVEG------------CT-----GAL---HILARDVHNRI 456
Query: 314 HIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKN 373
I + +++L SP ++ ++A L LAQD I +G PL +LL S+N
Sbjct: 457 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRN 516
Query: 374 GSLQHNAAFALYGLADN 390
+ AA L+ ++++
Sbjct: 517 EGVATYAAAVLFRMSED 533
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 6/115 (5%)
Query: 296 EAALLLGQFAAADSNSKVHIVQRG--AVRPLIEMLQSP-DSQLKEMSAFALGRLAQDTHN 352
+AA+++ Q + +++ H + R V ++ +Q+ D + +A L L+
Sbjct: 38 KAAVMVHQLSKKEASR--HAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG 95
Query: 353 QAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRV-GGVQKL 406
I + GGI L+K+L S S+ A L+ L +++ VR+ GG+QK+
Sbjct: 96 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKM 150
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 102/225 (45%), Gaps = 3/225 (1%)
Query: 167 VIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFV-DVKVQRAAAGALRTLAFKND 225
V+ +AA + L+ + A+ +R + +V ++ DV+ R AG L L+ +
Sbjct: 31 VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 89
Query: 226 ENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGL 285
E I + +P LV ML S SV F A+ + NL+ K V LAG LQ ++ L
Sbjct: 90 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 149
Query: 286 LSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPD-SQLKEMSAFALG 344
L+ + + L A + SK+ I+ G + L+ ++++ +L ++ L
Sbjct: 150 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 209
Query: 345 RLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD 389
L+ + N+ I + GG+ L L + L N + L L+D
Sbjct: 210 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 254
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 103/252 (40%), Gaps = 44/252 (17%)
Query: 155 YKNG------GNSRALSGVIRRAAD-------AITNLAH------ENANIKTRVRVEDGI 195
YKN G AL + RA D AI L H E + VR+ G+
Sbjct: 296 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGL 355
Query: 196 PPLVELLKF-VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLV-LMLRSEDASVHF 253
P +V+LL + +A G +R LA N + E A+P LV L++R+ +
Sbjct: 356 PVVVKLLHPPSHWPLIKATVGLIRNLAL-CPANHAPLREQGAIPRLVQLLVRAHQDTQRR 414
Query: 254 EAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKV 313
++G G ++ E I+ G C+ AL A D ++++
Sbjct: 415 TSMG--GTQQQFVEGVRMEEIVEG------------CT-----GAL---HILARDVHNRI 452
Query: 314 HIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKN 373
I + +++L SP ++ ++A L LAQD I +G PL +LL S+N
Sbjct: 453 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRN 512
Query: 374 GSLQHNAAFALY 385
+ AA L+
Sbjct: 513 EGVATYAAAVLF 524
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 6/115 (5%)
Query: 296 EAALLLGQFAAADSNSKVHIVQRG--AVRPLIEMLQSP-DSQLKEMSAFALGRLAQDTHN 352
+AA+++ Q + +++ H + R V ++ +Q+ D + +A L L+
Sbjct: 34 KAAVMVHQLSKKEASR--HAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG 91
Query: 353 QAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRV-GGVQKL 406
I + GGI L+K+L S S+ A L+ L +++ VR+ GG+QK+
Sbjct: 92 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKM 146
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 102/225 (45%), Gaps = 3/225 (1%)
Query: 167 VIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFV-DVKVQRAAAGALRTLAFKND 225
V+ +AA + L+ + A+ +R + +V ++ DV+ R AG L L+ +
Sbjct: 18 VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 76
Query: 226 ENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGL 285
E I + +P LV ML S SV F A+ + NL+ K V LAG LQ ++ L
Sbjct: 77 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 136
Query: 286 LSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPD-SQLKEMSAFALG 344
L+ + + L A + SK+ I+ G + L+ ++++ +L ++ L
Sbjct: 137 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 196
Query: 345 RLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD 389
L+ + N+ I + GG+ L L + L N + L L+D
Sbjct: 197 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 241
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 103/252 (40%), Gaps = 44/252 (17%)
Query: 155 YKNG------GNSRALSGVIRRAAD-------AITNLAH------ENANIKTRVRVEDGI 195
YKN G AL + RA D AI L H E + VR+ G+
Sbjct: 283 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGL 342
Query: 196 PPLVELLKF-VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLV-LMLRSEDASVHF 253
P +V+LL + +A G +R LA N + E A+P LV L++R+ +
Sbjct: 343 PVVVKLLHPPSHWPLIKATVGLIRNLAL-CPANHAPLREQGAIPRLVQLLVRAHQDTQRR 401
Query: 254 EAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKV 313
++G G ++ E I+ G C+ AL A D ++++
Sbjct: 402 TSMG--GTQQQFVEGVRMEEIVEG------------CT-----GAL---HILARDVHNRI 439
Query: 314 HIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKN 373
I + +++L SP ++ ++A L LAQD I +G PL +LL S+N
Sbjct: 440 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRN 499
Query: 374 GSLQHNAAFALY 385
+ AA L+
Sbjct: 500 EGVATYAAAVLF 511
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 6/115 (5%)
Query: 296 EAALLLGQFAAADSNSKVHIVQRG--AVRPLIEMLQSP-DSQLKEMSAFALGRLAQDTHN 352
+AA+++ Q + +++ H + R V ++ +Q+ D + +A L L+
Sbjct: 21 KAAVMVHQLSKKEASR--HAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG 78
Query: 353 QAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRV-GGVQKL 406
I + GGI L+K+L S S+ A L+ L +++ VR+ GG+QK+
Sbjct: 79 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKM 133
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 102/225 (45%), Gaps = 3/225 (1%)
Query: 167 VIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFV-DVKVQRAAAGALRTLAFKND 225
V+ +AA + L+ + A+ +R + +V ++ DV+ R AG L L+ +
Sbjct: 18 VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 76
Query: 226 ENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGL 285
E I + +P LV ML S SV F A+ + NL+ K V LAG LQ ++ L
Sbjct: 77 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 136
Query: 286 LSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPD-SQLKEMSAFALG 344
L+ + + L A + SK+ I+ G + L+ ++++ +L ++ L
Sbjct: 137 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 196
Query: 345 RLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD 389
L+ + N+ I + GG+ L L + L N + L L+D
Sbjct: 197 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 241
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 107/257 (41%), Gaps = 44/257 (17%)
Query: 155 YKNG------GNSRALSGVIRRAAD-------AITNLAH------ENANIKTRVRVEDGI 195
YKN G AL + RA D AI L H E + VR+ G+
Sbjct: 283 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGL 342
Query: 196 PPLVELLKF-VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLV-LMLRSEDASVHF 253
P +V+LL + +A G +R LA N + E A+P LV L++R+ +
Sbjct: 343 PVVVKLLHPPSHWPLIKATVGLIRNLAL-CPANHAPLREQGAIPRLVQLLVRAHQDTQRR 401
Query: 254 EAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKV 313
++G G ++ E I+ G C+ AL A D ++++
Sbjct: 402 TSMG--GTQQQFVEGVRMEEIVEG------------CT-----GAL---HILARDVHNRI 439
Query: 314 HIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKN 373
I + +++L SP ++ ++A L LAQD I +G PL +LL S+N
Sbjct: 440 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRN 499
Query: 374 GSLQHNAAFALYGLADN 390
+ AA L+ ++++
Sbjct: 500 EGVATYAAAVLFRMSED 516
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 6/115 (5%)
Query: 296 EAALLLGQFAAADSNSKVHIVQRG--AVRPLIEMLQSP-DSQLKEMSAFALGRLAQDTHN 352
+AA+++ Q + +++ H + R V ++ +Q+ D + +A L L+
Sbjct: 21 KAAVMVHQLSKKEASR--HAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG 78
Query: 353 QAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRV-GGVQKL 406
I + GGI L+K+L S S+ A L+ L +++ VR+ GG+QK+
Sbjct: 79 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKM 133
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 102/225 (45%), Gaps = 3/225 (1%)
Query: 167 VIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFV-DVKVQRAAAGALRTLAFKND 225
V+ +AA + L+ + A+ +R + +V ++ DV+ R AG L L+ +
Sbjct: 20 VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 78
Query: 226 ENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGL 285
E I + +P LV ML S SV F A+ + NL+ K V LAG LQ ++ L
Sbjct: 79 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 138
Query: 286 LSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPD-SQLKEMSAFALG 344
L+ + + L A + SK+ I+ G + L+ ++++ +L ++ L
Sbjct: 139 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 198
Query: 345 RLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD 389
L+ + N+ I + GG+ L L + L N + L L+D
Sbjct: 199 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 243
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 107/257 (41%), Gaps = 44/257 (17%)
Query: 155 YKNG------GNSRALSGVIRRAAD-------AITNLAH------ENANIKTRVRVEDGI 195
YKN G AL + RA D AI L H E + VR+ G+
Sbjct: 285 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGL 344
Query: 196 PPLVELLKF-VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLV-LMLRSEDASVHF 253
P +V+LL + +A G +R LA N + E A+P LV L++R+ +
Sbjct: 345 PVVVKLLHPPSHWPLIKATVGLIRNLAL-CPANHAPLREQGAIPRLVQLLVRAHQDTQRR 403
Query: 254 EAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKV 313
++G G ++ E I+ G C+ AL A D ++++
Sbjct: 404 TSMG--GTQQQFVEGVRMEEIVEG------------CT-----GAL---HILARDVHNRI 441
Query: 314 HIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKN 373
I + +++L SP ++ ++A L LAQD I +G PL +LL S+N
Sbjct: 442 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRN 501
Query: 374 GSLQHNAAFALYGLADN 390
+ AA L+ ++++
Sbjct: 502 EGVATYAAAVLFRMSED 518
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 6/115 (5%)
Query: 296 EAALLLGQFAAADSNSKVHIVQRG--AVRPLIEMLQSP-DSQLKEMSAFALGRLAQDTHN 352
+AA+++ Q + +++ H + R V ++ +Q+ D + +A L L+
Sbjct: 23 KAAVMVHQLSKKEASR--HAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG 80
Query: 353 QAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRV-GGVQKL 406
I + GGI L+K+L S S+ A L+ L +++ VR+ GG+QK+
Sbjct: 81 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKM 135
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 102/225 (45%), Gaps = 3/225 (1%)
Query: 167 VIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFV-DVKVQRAAAGALRTLAFKND 225
V+ +AA + L+ + A+ +R + +V ++ DV+ R AG L L+ +
Sbjct: 33 VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 91
Query: 226 ENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGL 285
E I + +P LV ML S SV F A+ + NL+ K V LAG LQ ++ L
Sbjct: 92 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 151
Query: 286 LSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPD-SQLKEMSAFALG 344
L+ + + L A + SK+ I+ G + L+ ++++ +L ++ L
Sbjct: 152 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 211
Query: 345 RLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD 389
L+ + N+ I + GG+ L L + L N + L L+D
Sbjct: 212 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 256
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 103/252 (40%), Gaps = 44/252 (17%)
Query: 155 YKNG------GNSRALSGVIRRAAD-------AITNLAH------ENANIKTRVRVEDGI 195
YKN G AL + RA D AI L H E + VR+ G+
Sbjct: 298 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGL 357
Query: 196 PPLVELLKF-VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLV-LMLRSEDASVHF 253
P +V+LL + +A G +R LA N + E A+P LV L++R+ +
Sbjct: 358 PVVVKLLHPPSHWPLIKATVGLIRNLAL-CPANHAPLREQGAIPRLVQLLVRAHQDTQRR 416
Query: 254 EAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKV 313
++G G ++ E I+ G C+ AL A D ++++
Sbjct: 417 TSMG--GTQQQFVEGVRMEEIVEG------------CT-----GAL---HILARDVHNRI 454
Query: 314 HIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKN 373
I + +++L SP ++ ++A L LAQD I +G PL +LL S+N
Sbjct: 455 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRN 514
Query: 374 GSLQHNAAFALY 385
+ AA L+
Sbjct: 515 EGVATYAAAVLF 526
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 6/115 (5%)
Query: 296 EAALLLGQFAAADSNSKVHIVQRG--AVRPLIEMLQSP-DSQLKEMSAFALGRLAQDTHN 352
+AA+++ Q + +++ H + R V ++ +Q+ D + +A L L+
Sbjct: 36 KAAVMVHQLSKKEASR--HAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG 93
Query: 353 QAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRV-GGVQKL 406
I + GGI L+K+L S S+ A L+ L +++ VR+ GG+QK+
Sbjct: 94 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKM 148
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 102/225 (45%), Gaps = 3/225 (1%)
Query: 167 VIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFV-DVKVQRAAAGALRTLAFKND 225
V+ +AA + L+ + A+ +R + +V ++ DV+ R AG L L+ +
Sbjct: 22 VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 80
Query: 226 ENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGL 285
E I + +P LV ML S SV F A+ + NL+ K V LAG LQ ++ L
Sbjct: 81 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 140
Query: 286 LSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPD-SQLKEMSAFALG 344
L+ + + L A + SK+ I+ G + L+ ++++ +L ++ L
Sbjct: 141 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 200
Query: 345 RLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD 389
L+ + N+ I + GG+ L L + L N + L L+D
Sbjct: 201 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 245
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 106/256 (41%), Gaps = 44/256 (17%)
Query: 155 YKNG------GNSRALSGVIRRAAD-------AITNLAH------ENANIKTRVRVEDGI 195
YKN G AL + RA D AI L H E + VR+ G+
Sbjct: 287 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGL 346
Query: 196 PPLVELLKF-VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLV-LMLRSEDASVHF 253
P +V+LL + +A G +R LA N + E A+P LV L++R+ +
Sbjct: 347 PVVVKLLHPPSHWPLIKATVGLIRNLAL-CPANHAPLREQGAIPRLVQLLVRAHQDTQRR 405
Query: 254 EAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKV 313
++G G ++ E I+ G C+ AL A D ++++
Sbjct: 406 TSMG--GTQQQFVEGVRMEEIVEG------------CT-----GAL---HILARDVHNRI 443
Query: 314 HIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKN 373
I + +++L SP ++ ++A L LAQD I +G PL +LL S+N
Sbjct: 444 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRN 503
Query: 374 GSLQHNAAFALYGLAD 389
+ AA L+ +++
Sbjct: 504 EGVATYAAAVLFRMSE 519
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 6/115 (5%)
Query: 296 EAALLLGQFAAADSNSKVHIVQRG--AVRPLIEMLQSP-DSQLKEMSAFALGRLAQDTHN 352
+AA+++ Q + +++ H + R V ++ +Q+ D + +A L L+
Sbjct: 25 KAAVMVHQLSKKEASR--HAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG 82
Query: 353 QAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRV-GGVQKL 406
I + GGI L+K+L S S+ A L+ L +++ VR+ GG+QK+
Sbjct: 83 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKM 137
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 77/328 (23%), Positives = 145/328 (44%), Gaps = 54/328 (16%)
Query: 87 LIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEH-QQIIVDTGAL 145
+++ GAVP +E L + +E +V+++ +ALG +A + ++D L
Sbjct: 102 IVIQAGAVPIFIELLSS---------EFE-DVQEQAVWALGNIAGDSTMCRDYVLDCNIL 151
Query: 146 PHLVSLLKQYKNGGNSR----ALSGVIRRA----------------------------AD 173
P L+ L + +R ALS + R AD
Sbjct: 152 PPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLAD 211
Query: 174 AITNLAH--ENANIKTRVRVEDGIP-PLVELLKFVDVKVQRAAAGALRTLAFKNDENKKL 230
A L++ + N K + ++ G+ LVELL D KV A A+ + +D ++
Sbjct: 212 ACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQV 271
Query: 231 IVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSC 290
I+ C+AL +L+ +L S S+ EA I N+ + + + VI A +I +L ++
Sbjct: 272 ILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAE 331
Query: 291 SESKREAALLLGQFAAADSNSKV-HIVQRGAVRPLIEMLQSPDSQLKEMSAFALG---RL 346
+++EAA + + S ++ ++V+ G ++PL ++L DS++ +++ L RL
Sbjct: 332 FRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRL 391
Query: 347 AQDTHNQAGIAQDGGILPLLKLLDSKNG 374
+ + G GI P L++ G
Sbjct: 392 GEQEAKRNGT----GINPYCALIEEAYG 415
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 97/216 (44%), Gaps = 10/216 (4%)
Query: 133 PEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVE 192
P ++I G + V LK+ +N + +A +TN+A N+ ++TR+ ++
Sbjct: 54 PPIDEVISTPGVVARFVEFLKRKEN-------CTLQFESAWVLTNIASGNS-LQTRIVIQ 105
Query: 193 DG-IPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSED-AS 250
G +P +ELL VQ A AL +A + + +++CN LP L+ + ++ +
Sbjct: 106 AGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLT 165
Query: 251 VHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSN 310
+ AV + NL + ++ L + LL S ++ +A L + ++
Sbjct: 166 MTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPND 225
Query: 311 SKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRL 346
++ G R L+E+L D ++ + A+G +
Sbjct: 226 KIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 296 EAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAG 355
E+A +L A+ +S ++Q GAV IE+L S ++E + +ALG +A D+
Sbjct: 84 ESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143
Query: 356 IAQDGGIL-PLLKLLDSKNG-SLQHNAAFALYGLA 388
D IL PLL+L +N ++ NA +AL L
Sbjct: 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLC 178
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 76/165 (46%), Gaps = 3/165 (1%)
Query: 245 RSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQF 304
R E+ ++ FE+ V+ N+ + + VI AGA+ I LLSS + + +A LG
Sbjct: 75 RKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNI 134
Query: 305 AAADSNSKVHIVQRGAVRPLIEMLQSPDS-QLKEMSAFALGRLAQDTHNQAGIAQDGGIL 363
A + + +++ + PL+++ + + + +AL L + A+ L
Sbjct: 135 AGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCL 194
Query: 364 PLLK-LLDSKNGSLQHNAAFALYGLADN-EDNVADLVRVGGVQKL 406
+L LL + + +A +AL L+D D + ++ G ++L
Sbjct: 195 NVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRL 239
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 77/328 (23%), Positives = 145/328 (44%), Gaps = 54/328 (16%)
Query: 87 LIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEH-QQIIVDTGAL 145
+++ GAVP +E L + +E +V+++ +ALG +A + ++D L
Sbjct: 99 IVIQAGAVPIFIELLSS---------EFE-DVQEQAVWALGNIAGDSTMCRDYVLDCNIL 148
Query: 146 PHLVSLLKQYKNGGNSR----ALSGVIRRA----------------------------AD 173
P L+ L + +R ALS + R AD
Sbjct: 149 PPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLAD 208
Query: 174 AITNLAH--ENANIKTRVRVEDGIP-PLVELLKFVDVKVQRAAAGALRTLAFKNDENKKL 230
A L++ + N K + ++ G+ LVELL D KV A A+ + +D ++
Sbjct: 209 ACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQV 268
Query: 231 IVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSC 290
I+ C+AL +L+ +L S S+ EA I N+ + + + VI A +I +L ++
Sbjct: 269 ILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAE 328
Query: 291 SESKREAALLLGQFAAADSNSKV-HIVQRGAVRPLIEMLQSPDSQLKEMSAFALG---RL 346
+++EAA + + S ++ ++V+ G ++PL ++L DS++ +++ L RL
Sbjct: 329 FRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRL 388
Query: 347 AQDTHNQAGIAQDGGILPLLKLLDSKNG 374
+ + G GI P L++ G
Sbjct: 389 GEQEAKRNGT----GINPYCALIEEAYG 412
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 97/216 (44%), Gaps = 10/216 (4%)
Query: 133 PEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVE 192
P ++I G + V LK+ +N + +A +TN+A N+ ++TR+ ++
Sbjct: 51 PPIDEVISTPGVVARFVEFLKRKEN-------CTLQFESAWVLTNIASGNS-LQTRIVIQ 102
Query: 193 DG-IPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSED-AS 250
G +P +ELL VQ A AL +A + + +++CN LP L+ + ++ +
Sbjct: 103 AGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLT 162
Query: 251 VHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSN 310
+ AV + NL + ++ L + LL S ++ +A L + ++
Sbjct: 163 MTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPND 222
Query: 311 SKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRL 346
++ G R L+E+L D ++ + A+G +
Sbjct: 223 KIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 258
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 296 EAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAG 355
E+A +L A+ +S ++Q GAV IE+L S ++E + +ALG +A D+
Sbjct: 81 ESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 140
Query: 356 IAQDGGIL-PLLKLLDSKNG-SLQHNAAFALYGLA 388
D IL PLL+L +N ++ NA +AL L
Sbjct: 141 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLC 175
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 76/165 (46%), Gaps = 3/165 (1%)
Query: 245 RSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQF 304
R E+ ++ FE+ V+ N+ + + VI AGA+ I LLSS + + +A LG
Sbjct: 72 RKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNI 131
Query: 305 AAADSNSKVHIVQRGAVRPLIEMLQSPDS-QLKEMSAFALGRLAQDTHNQAGIAQDGGIL 363
A + + +++ + PL+++ + + + +AL L + A+ L
Sbjct: 132 AGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCL 191
Query: 364 PLLK-LLDSKNGSLQHNAAFALYGLADN-EDNVADLVRVGGVQKL 406
+L LL + + +A +AL L+D D + ++ G ++L
Sbjct: 192 NVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRL 236
>pdb|1XM9|A Chain A, Structure Of The Armadillo Repeat Domain Of Plakophilin 1
Length = 457
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 61/110 (55%), Gaps = 4/110 (3%)
Query: 175 ITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVEC 234
I + ++ + K +V GI LV+LL+ + VQ+AAAGALR L F++ NK
Sbjct: 26 IQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQ 85
Query: 235 NALPTLV-LMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVI 283
N + V L+ R+ +A + + G++ NL SS KE ++A AL PV+
Sbjct: 86 NGIREAVSLLRRTGNAEIQKQLTGLLWNL--SSTDELKEELIADAL-PVL 132
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 1/115 (0%)
Query: 195 IPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFE 254
IP V+ L D K Q A ++ F+++ K+ + + + LV +LRS + +V
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 255 AVGVIGNLVHSSPSIKKEVILAGALQPVIGLL-SSSCSESKREAALLLGQFAAAD 308
A G + NLV S + K E ++ + LL + +E +++ LL ++ D
Sbjct: 64 AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD 118
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 4/114 (3%)
Query: 192 EDGIPPLVELLKFVDVKVQRAAAGALRTLA----FKNDENKKLIVECNALPTLVLMLRSE 247
E G+P + LL+ + V R+ A L ++ ++ E L T S
Sbjct: 330 EKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSN 389
Query: 248 DASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLL 301
+ A + NL+ S P + K+ + L +I L SS S EAA LL
Sbjct: 390 SEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLL 443
>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master
Regulator Of Oncogenesis
Length = 120
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 40/91 (43%)
Query: 535 LSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFI 594
L DV +VEG++F HR L A S F+ +F G EI + +M F
Sbjct: 25 LCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFA 84
Query: 595 YTGNVDVSVDIAQDLLRAADQYLLEGLKRLC 625
YT + VS D+L AA + + +C
Sbjct: 85 YTATLTVSTANVGDILSAARLLEIPAVSHVC 115
>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
pdb|3IFQ|B Chain B, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
Length = 553
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 107/250 (42%), Gaps = 11/250 (4%)
Query: 142 TGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVEL 201
T ALP L LL V+ +AA + L+ + A+ + + + +V
Sbjct: 18 TRALPELTKLLNDED--------PVVVTKAAMIVNQLSKKEASRRALMGSPQLVAAVVRT 69
Query: 202 LKFV-DVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIG 260
++ D+ R L L+ + E I + +P LV ML S SV F A+ +
Sbjct: 70 MQNTSDLDTARCTTSILHNLSH-HREGLLAIFKSGGIPALVRMLSSPVESVLFYAITTLH 128
Query: 261 NLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGA 320
NL+ K V LA LQ ++ LL+ + + L A + SK+ I+ G
Sbjct: 129 NLLLYQEGAKMAVRLADGLQKMVPLLNKNNPKFLAITTDCLQLLAYGNQESKLIILANGG 188
Query: 321 VRPLIEMLQSPD-SQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHN 379
+ L++++++ +L ++ L L+ N+ I + GG+ L K L S + L N
Sbjct: 189 PQALVQIMRNYSYEKLLWTTSRVLKVLSVCPSNKPAIVEAGGMQALGKHLTSNSPRLVQN 248
Query: 380 AAFALYGLAD 389
+ L L+D
Sbjct: 249 CLWTLRNLSD 258
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 92/210 (43%), Gaps = 28/210 (13%)
Query: 186 KTRVRVEDGIPPLVELLKFVD-VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLML 244
+ VR+ GIP +V+LL + + +A G +R LA N + E +P LV +L
Sbjct: 350 QNSVRLNYGIPAIVKLLNQPNQWPLVKATIGLIRNLALC-PANHAPLQEAAVIPRLVQLL 408
Query: 245 --RSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLG 302
+DA H A G + ++ E I+ G C+ AL
Sbjct: 409 VKAHQDAQRHVAA----GTQQPYTDGVRMEEIVEG------------CT-----GAL--- 444
Query: 303 QFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGI 362
A D +++ I + + +++L S ++ ++A L LAQD I +G
Sbjct: 445 HILARDPMNRMEIFRLNTIPLFVQLLYSSVENIQRVAAGVLCELAQDKEAADAIDAEGAS 504
Query: 363 LPLLKLLDSKNGSLQHNAAFALYGLADNED 392
PL++LL S+N AA L+ ++++++
Sbjct: 505 APLMELLHSRNEGTATYAAAVLFRISEDKN 534
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 65/151 (43%), Gaps = 8/151 (5%)
Query: 139 IVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPL 198
I +G +P LV +L S + V+ A + NL K VR+ DG+ +
Sbjct: 99 IFKSGGIPALVRML--------SSPVESVLFYAITTLHNLLLYQEGAKMAVRLADGLQKM 150
Query: 199 VELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGV 258
V LL + K L+ LA+ N E+K +I+ LV ++R+
Sbjct: 151 VPLLNKNNPKFLAITTDCLQLLAYGNQESKLIILANGGPQALVQIMRNYSYEKLLWTTSR 210
Query: 259 IGNLVHSSPSIKKEVILAGALQPVIGLLSSS 289
+ ++ PS K ++ AG +Q + L+S+
Sbjct: 211 VLKVLSVCPSNKPAIVEAGGMQALGKHLTSN 241
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 80/206 (38%), Gaps = 39/206 (18%)
Query: 70 TASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQ--LTNAQIPYEHEVEKECAFALG 127
T+ H E A+N + N +PA+V+ L P Q L A I G
Sbjct: 340 TSRHPEAEMAQNS-----VRLNYGIPAIVKLLNQPNQWPLVKATI--------------G 380
Query: 128 L---LAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSG-------------VIRRA 171
L LA+ P + + + +P LV LL + +G ++
Sbjct: 381 LIRNLALCPANHAPLQEAAVIPRLVQLLVKAHQDAQRHVAAGTQQPYTDGVRMEEIVEGC 440
Query: 172 ADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLI 231
A+ LA + N R+ + IP V+LL +QR AAG L LA + +
Sbjct: 441 TGALHILARDPMNRMEIFRL-NTIPLFVQLLYSSVENIQRVAAGVLCELAQDKEAADAID 499
Query: 232 VECNALPTL-VLMLRSEDASVHFEAV 256
E + P + +L R+E + + AV
Sbjct: 500 AEGASAPLMELLHSRNEGTATYAAAV 525
>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
pdb|2NN2|B Chain B, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
Length = 133
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 40/91 (43%)
Query: 535 LSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFI 594
L DV +VEG++F HR L A S F+ +F G EI + +M F
Sbjct: 35 LCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFA 94
Query: 595 YTGNVDVSVDIAQDLLRAADQYLLEGLKRLC 625
YT + VS D+L AA + + +C
Sbjct: 95 YTATLTVSTANVGDILSAARLLEIPAVSHVC 125
>pdb|3LTM|A Chain A, Structure Of A New Family Of Artificial Alpha Helicoidal
Repeat Proteins (Alpha-Rep) Based On Thermostable
Heat-Like Repeats
pdb|3LTM|B Chain B, Structure Of A New Family Of Artificial Alpha Helicoidal
Repeat Proteins (Alpha-Rep) Based On Thermostable
Heat-Like Repeats
Length = 211
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 76/176 (43%), Gaps = 43/176 (24%)
Query: 209 VQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPS 268
V+RAAA AL + DE A+ L+ L+ EDA V A +G +
Sbjct: 35 VRRAAAYALGKI---GDER--------AVEPLIKALKDEDAWVRRAAADALGQIGDER-- 81
Query: 269 IKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEML 328
A++P+I L ++ AA+ LGQ I AV PLI+ L
Sbjct: 82 ---------AVEPLIKALKDEDGWVRQSAAVALGQ-----------IGDERAVEPLIKAL 121
Query: 329 QSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFAL 384
+ D ++ +AFALG I + + PL+K L ++G ++ +AA AL
Sbjct: 122 KDEDWFVRIAAAFALGE----------IGDERAVEPLIKALKDEDGWVRQSAADAL 167
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 21/113 (18%)
Query: 278 ALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKE 337
A++P+I L + +R AA LGQ I AV PLI+ L+ D +++
Sbjct: 51 AVEPLIKALKDEDAWVRRAAADALGQ-----------IGDERAVEPLIKALKDEDGWVRQ 99
Query: 338 MSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADN 390
+A ALG+ I + + PL+K L ++ ++ AAFAL + D
Sbjct: 100 SAAVALGQ----------IGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE 142
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 65/156 (41%), Gaps = 33/156 (21%)
Query: 192 EDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASV 251
E + PL++ LK D V+RAAA AL + DE A+ L+ L+ ED V
Sbjct: 49 ERAVEPLIKALKDEDAWVRRAAADALGQI---GDE--------RAVEPLIKALKDEDGWV 97
Query: 252 HFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNS 311
A +G + A++P+I L + AA LG+
Sbjct: 98 RQSAAVALGQIGDER-----------AVEPLIKALKDEDWFVRIAAAFALGE-------- 138
Query: 312 KVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLA 347
I AV PLI+ L+ D +++ +A ALG +
Sbjct: 139 ---IGDERAVEPLIKALKDEDGWVRQSAADALGEIG 171
>pdb|3LTJ|A Chain A, Structure Of A New Family Of Artificial Alpha Helicoidal
Repeat Proteins (Alpha-Rep) Based On Thermostable
Heat-Like Repeats
Length = 201
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 76/176 (43%), Gaps = 43/176 (24%)
Query: 209 VQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPS 268
V+RAAA AL + DE A+ L+ L+ EDA V A +G +
Sbjct: 30 VRRAAAYALGKI---GDER--------AVEPLIKALKDEDAWVRRAAADALGQIGDER-- 76
Query: 269 IKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEML 328
A++P+I L ++ AA+ LGQ I AV PLI+ L
Sbjct: 77 ---------AVEPLIKALKDEDGWVRQSAAVALGQ-----------IGDERAVEPLIKAL 116
Query: 329 QSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFAL 384
+ D ++ +AFALG I + + PL+K L ++G ++ +AA AL
Sbjct: 117 KDEDWFVRIAAAFALGE----------IGDERAVEPLIKALKDEDGWVRQSAADAL 162
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 21/113 (18%)
Query: 278 ALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKE 337
A++P+I L + +R AA LGQ I AV PLI+ L+ D +++
Sbjct: 46 AVEPLIKALKDEDAWVRRAAADALGQ-----------IGDERAVEPLIKALKDEDGWVRQ 94
Query: 338 MSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADN 390
+A ALG+ I + + PL+K L ++ ++ AAFAL + D
Sbjct: 95 SAAVALGQ----------IGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE 137
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 65/156 (41%), Gaps = 33/156 (21%)
Query: 192 EDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASV 251
E + PL++ LK D V+RAAA AL + DE A+ L+ L+ ED V
Sbjct: 44 ERAVEPLIKALKDEDAWVRRAAADALGQI---GDE--------RAVEPLIKALKDEDGWV 92
Query: 252 HFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNS 311
A +G + A++P+I L + AA LG+
Sbjct: 93 RQSAAVALGQIGDER-----------AVEPLIKALKDEDWFVRIAAAFALGE-------- 133
Query: 312 KVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLA 347
I AV PLI+ L+ D +++ +A ALG +
Sbjct: 134 ---IGDERAVEPLIKALKDEDGWVRQSAADALGEIG 166
>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain
pdb|3GA1|B Chain B, Crystal Structure Of The Human Nac1 Poz Domain
Length = 129
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 537 DVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIP-NIRWNVFELMMRFIY 595
DV+ VV+G F AHR L ASS FR +F+ + VE+P ++ F+ ++ F Y
Sbjct: 35 DVSVVVKGHAFKAHRAVLAASSSYFRDLFN----NSRSAVVELPAAVQPQSFQQILSFCY 90
Query: 596 TGNVDVSVDIAQDLLRAADQYL 617
TG + ++V QDLL +L
Sbjct: 91 TGRLSMNVG-DQDLLMYTAGFL 111
>pdb|3SLA|A Chain A, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|B Chain B, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|C Chain C, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|D Chain D, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|E Chain E, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
Length = 168
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 2/124 (1%)
Query: 167 VIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFV-DVKVQRAAAGALRTLAFKND 225
V+ +AA + L+ + A+ +R + +V ++ DV+ R AG L L+ +
Sbjct: 29 VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 87
Query: 226 ENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGL 285
E I + +P LV ML S SV F A+ + NL+ K V LAG LQ ++ L
Sbjct: 88 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 147
Query: 286 LSSS 289
L+ +
Sbjct: 148 LNKT 151
>pdb|3SL9|A Chain A, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|B Chain B, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|E Chain E, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|G Chain G, X-Ray Structure Of Beta Catenin In Complex With Bcl9
Length = 167
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 2/124 (1%)
Query: 167 VIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFV-DVKVQRAAAGALRTLAFKND 225
V+ +AA + L+ + A+ +R + +V ++ DV+ R AG L L+ +
Sbjct: 29 VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 87
Query: 226 ENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGL 285
E I + +P LV ML S SV F A+ + NL+ K V LAG LQ ++ L
Sbjct: 88 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 147
Query: 286 LSSS 289
L+ +
Sbjct: 148 LNKT 151
>pdb|3TT9|A Chain A, Crystal Structure Of The Stable Degradation Fragment Of
Human Plakophilin 2 Isoform A (Pkp2a) C752r Variant
Length = 233
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Query: 168 IRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDEN 227
I AA I + + + + RV GI L++LLK + VQRA GALR L F++++N
Sbjct: 27 ISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN 86
Query: 228 KKLIVECNALPTLVLMLR-SEDASVHFEAVGVIGNLVHSSPSIKKEVILAGAL 279
K + E N +P L+ +L+ + D + G++ NL SS K +++ AL
Sbjct: 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNL--SSNDKLKNLMITEAL 137
>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin
Length = 780
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 101/230 (43%), Gaps = 12/230 (5%)
Query: 139 IVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPL 198
I +G +P LV++L + V+ A + NL K VR+ G+ +
Sbjct: 230 IFKSGGIPALVNML--------GSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKM 281
Query: 199 VELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGV 258
V LL +VK L+ LA+ N E+K +I+ LV ++R+
Sbjct: 282 VALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSR 341
Query: 259 IGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQR 318
+ ++ S K ++ AG +Q +GL + S+ + L + +D+ +K ++
Sbjct: 342 VLKVLSVCSSNKPAIVEAGGMQ-ALGLHLTDPSQRLVQNCLWTLR-NLSDAATKQEGME- 398
Query: 319 GAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTH-NQAGIAQDGGILPLLK 367
G + L+++L S D + +A L L + + N+ + Q GGI L++
Sbjct: 399 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVR 448
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 95/215 (44%), Gaps = 26/215 (12%)
Query: 180 HENANI-KTRVRVEDGIPPLVELLKF-VDVKVQRAAAGALRTLAFKNDENKKLIVECNAL 237
H++A + + VR+ G+P +V+LL + +A G +R LA N + E A+
Sbjct: 474 HQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL-CPANHAPLREQGAI 532
Query: 238 PTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVI-GLLSSSCSESKRE 296
P LV +L V + ++ + G Q + G+ E+
Sbjct: 533 PRLVQLL------------------VRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTG 574
Query: 297 AALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGI 356
A +L A D ++++ I + +++L SP ++ ++A L LAQD I
Sbjct: 575 ALHIL----ARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAI 630
Query: 357 AQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNE 391
+G PL +LL S+N + AA L+ +++++
Sbjct: 631 EAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK 665
>pdb|1CS3|A Chain A, Structure Of BtbPOZ TRANSCRIPTION REPRESSION DOMAIN FROM
PROMELOCYTIC Leukemia Zinc Finger Oncoprotein
Length = 116
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 516 PPSPTQQVYLGEQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAK 575
P PT + Q TL DV +V+ ++F+AHR L +S F +F +N++
Sbjct: 8 PSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILF-----HRNSQ 62
Query: 576 DVEIPNIRWNVFELMMRFIYTGNVDVSVDIAQDLLRAA 613
+ + F+ ++ + YT + + DLL AA
Sbjct: 63 HYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAA 100
>pdb|1BUO|A Chain A, Btb Domain From Plzf
Length = 121
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 516 PPSPTQQVYLGEQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAK 575
P PT + Q TL DV +V+ ++F+AHR L +S F +F +N++
Sbjct: 9 PSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILF-----HRNSQ 63
Query: 576 DVEIPNIRWNVFELMMRFIYTGNVDVSVDIAQDLLRAA 613
+ + F+ ++ + YT + + DLL AA
Sbjct: 64 HYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAA 101
>pdb|3M8V|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
II
pdb|3M4T|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
I
Length = 124
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 9/94 (9%)
Query: 537 DVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYT 596
DVT +VE ++F AH+ L ASS F +F + VE+ IR +F ++ +IY+
Sbjct: 35 DVTVIVEDRKFRAHKNILSASSTYFHQLFSVA-----GQVVELSFIRAEIFAEILNYIYS 89
Query: 597 GN-VDVSVDIAQDLLRAADQYLLEGLKRLCEYSI 629
V V D+ +L+++ L G+K + E +
Sbjct: 90 SKIVRVRSDLLDELIKSGQ---LLGVKFIAELGV 120
>pdb|3OHU|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHV|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
Length = 125
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 535 LSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIP-NIRWNVFELMMRF 593
L DVT +VE K+F AHR L A S+ F G + KN V +P + F +++F
Sbjct: 32 LCDVTLIVERKEFRAHRAVLAACSEYFWQALVG--QTKNDLVVSLPEEVTARGFGPLLQF 89
Query: 594 IYTGNVDVSVDIAQDLLRAADQYLLEGLKRLC 625
YT + +S + ++++R A+ + L+ C
Sbjct: 90 AYTAKLLLSRENIREVIRCAEFLRMHNLEDSC 121
>pdb|2Q81|A Chain A, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|B Chain B, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|C Chain C, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|D Chain D, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
Length = 119
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 535 LSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFI 594
L D TFVV+G F AH+ L A S+ F+ +F +K+ ++I N ++ F+
Sbjct: 27 LCDCTFVVDGVHFKAHKAVLAACSEYFKMLF---VDQKDVVHLDISNAAG--LGQVLEFM 81
Query: 595 YTGNVDVSVDIAQDLLRAA 613
YT + +S + D+L A
Sbjct: 82 YTAKLSLSPENVDDVLAVA 100
>pdb|3M52|A Chain A, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
pdb|3M52|B Chain B, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
Length = 117
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 535 LSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFI 594
L D TFVV+G F AH+ L A S+ F+ +F +K+ ++I N ++ F+
Sbjct: 25 LCDCTFVVDGVHFKAHKAVLAACSEYFKMLF---VDQKDVVHLDISNAAG--LGQVLEFM 79
Query: 595 YTGNVDVSVDIAQDLLRAA 613
YT + +S + D+L A
Sbjct: 80 YTAKLSLSPENVDDVLAVA 98
>pdb|3FKC|A Chain A, Crystal Structure Of Human Zinc Finger And Btb Domain
Containing 33
Length = 116
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 537 DVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYT 596
DVT +VE ++F AH+ L ASS F +F + VE+ IR +F ++ +IY+
Sbjct: 33 DVTVIVEDRKFRAHKNILSASSTYFHQLFSVA-----GQVVELSFIRAEIFAEILNYIYS 87
Query: 597 GN-VDVSVDIAQDLLRAA 613
V V D+ +L+++
Sbjct: 88 SKIVRVRSDLLDELIKSG 105
>pdb|2Z8H|A Chain A, Structure Of Mouse Bach1 Btb Domain
Length = 138
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 535 LSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAK-DVEIP-NIRWNVFELMMR 592
L DVT +VEG++F AHR L A S F + G + +A+ V +P + FE +++
Sbjct: 36 LCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVG---QTDAELTVTLPEEVTVKGFEPLIQ 92
Query: 593 FIYTGNVDVSVDIAQDLLRAADQYLLEGLKRLC 625
F YT + +S D ++ R + + ++ C
Sbjct: 93 FAYTAKLILSKDNVDEVCRCVEFLSVHNIEESC 125
>pdb|1R28|A Chain A, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R28|B Chain B, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R29|A Chain A, Crystal Structure Of The B-cell Lymphoma 6 (bcl6) Btb
Domain To 1.3 Angstrom
pdb|1R2B|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|1R2B|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|3BIM|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|C Chain C, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|D Chain D, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|E Chain E, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|F Chain F, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|G Chain G, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|H Chain H, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3LBZ|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
pdb|3LBZ|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
Length = 127
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 535 LSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEI-PNIRWNVFELMMRF 593
L+DV VV +QF AH+ L+A S F ++F K +N + + P I F +++ F
Sbjct: 29 LTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLK-RNLSVINLDPEINPEGFNILLDF 87
Query: 594 IYTGNVDV 601
+YT +++
Sbjct: 88 MYTSRLNL 95
>pdb|2VPK|A Chain A, Crystal Structure Of The Btb Domain Of Human Myoneurin
Length = 116
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 535 LSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFI 594
L D T V+ QF AHR L + S+ F A++ +N ++ ++ + F+ ++ FI
Sbjct: 22 LCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRS--TSENNVFLDQSQVKADGFQKLLEFI 79
Query: 595 YTGNVDVSVDIAQDLLRAADQYLLEGLKRLCE 626
YTG +++ +++ +AAD +E + C+
Sbjct: 80 YTGTLNLDSWNVKEIHQAADYLKVEEVVTKCK 111
>pdb|3BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 470
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 89/230 (38%), Gaps = 12/230 (5%)
Query: 139 IVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPL 198
I +G +P LV L + V+ A + NL K VR+ G+
Sbjct: 39 IFKSGGIPALVKXL--------GSPVDSVLFYAITTLHNLLLHQEGAKXAVRLAGGLQKX 90
Query: 199 VELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGV 258
V LL +VK L+ LA+ N E+K +I+ LV + R+
Sbjct: 91 VALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIXRTYTYEKLLWTTSR 150
Query: 259 IGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQR 318
+ ++ S K ++ AG Q + L+ + L + A + +
Sbjct: 151 VLKVLSVCSSNKPAIVEAGGXQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GXE 207
Query: 319 GAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTH-NQAGIAQDGGILPLLK 367
G + L+++L S D + +A L L + + N+ + Q GGI L++
Sbjct: 208 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKXXVCQVGGIEALVR 257
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 100/242 (41%), Gaps = 38/242 (15%)
Query: 159 GNSRALSGVIRRAAD-------AITNLAH------ENANIKTRVRVEDGIPPLVELLKF- 204
G AL + RA D AI L H E + VR+ G+P +V+LL
Sbjct: 250 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEXAQNAVRLHYGLPVVVKLLHPP 309
Query: 205 VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLV-LMLRSEDASVHFEAVGVIGNLV 263
+ +A G +R LA N + E A+P LV L++R+ + ++G G
Sbjct: 310 SHWPLIKATVGLIRNLAL-CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG--GTQQ 366
Query: 264 HSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRP 323
++ E I+ G C+ AL A D ++++ I +
Sbjct: 367 QFVEGVRXEEIVEG------------CT-----GAL---HILARDVHNRIVIRGLNTIPL 406
Query: 324 LIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFA 383
+++L SP ++ ++A L LAQD I +G PL +LL S+N + AA
Sbjct: 407 FVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAV 466
Query: 384 LY 385
L+
Sbjct: 467 LF 468
>pdb|3E4U|A Chain A, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|B Chain B, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|C Chain C, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|D Chain D, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|E Chain E, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|F Chain F, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
Length = 130
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 535 LSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEI-PNIRWNVFELMMRF 593
L+DV VV +QF AH+ L+A S F ++F K N + + P I F +++ F
Sbjct: 32 LTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLK-CNLSVINLDPEINPEGFCILLDF 90
Query: 594 IYTGNVDV 601
+YT +++
Sbjct: 91 MYTSRLNL 98
>pdb|2IHC|A Chain A, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|B Chain B, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|C Chain C, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|D Chain D, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
Length = 124
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 535 LSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIP-NIRWNVFELMMRF 593
L DVT VEG++F AHR L A S F + G + ++ +P + FE +++F
Sbjct: 29 LCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVG--QADGELNITLPEEVTVKGFEPLIQF 86
Query: 594 IYTGNVDVSVDIAQDLLRAADQYLLEGLKRLC 625
YT + +S + ++ + + + ++ C
Sbjct: 87 AYTAKLILSKENVDEVCKCVEFLSVHNIEESC 118
>pdb|3B84|A Chain A, Crystal Structure Of The Human Btb Domain Of The Krueppel
Related Zinc Finger Protein 3 (Hkr3)
Length = 119
Score = 32.3 bits (72), Expect = 0.81, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 537 DVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYT 596
D T V G F AH L S F++++ G + V +P +F L++ F YT
Sbjct: 26 DATLDVGGLVFKAHWSVLACCSHFFQSLYGDG----SGGSVVLPAGFAEIFGLLLDFFYT 81
Query: 597 GNVDVSVDIAQDLLRAADQYLLEGLKRLCE 626
G++ ++ +L AA + + LC+
Sbjct: 82 GHLALTSGNRDQVLLAARELRVPEAVELCQ 111
>pdb|2YY9|A Chain A, Crystal Structure Of Btb Domain From Mouse Hkr3
pdb|2YY9|B Chain B, Crystal Structure Of Btb Domain From Mouse Hkr3
Length = 135
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Query: 537 DVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYT 596
D T V G F AH L S F+ ++ G V +P +F L++ F YT
Sbjct: 27 DATLDVGGLVFKAHWSVLACCSHFFQRIYGDG----TGGSVVLPAGFAEIFGLLLDFFYT 82
Query: 597 GNVDVSVDIAQDLLRAADQYLLEGLKRLCE 626
G++ ++ +L AA + + LC+
Sbjct: 83 GHLALTSGNRDQVLLAAKELRVPEAVELCQ 112
>pdb|3NOW|A Chain A, Unc-45 From Drosophila Melanogaster
Length = 810
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Query: 174 AITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVE 233
A+TNLA N +++ R+ E G+ + L + + RAAA L L D K
Sbjct: 604 ALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGN 663
Query: 234 CNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIK-KEVILAGA 278
+ + L L+ ED G + + +S S+K E ILA A
Sbjct: 664 NDRVKFLALLCEDEDEETATACAGALA--IITSVSVKCCEKILAIA 707
>pdb|3HVE|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Gigaxoninbtb3-Box
Length = 256
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 529 FVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAM--FDGGYKEKNAKDVEIPNIRWNV 586
F D V++G++ + L A+S R ++ + + +E+ I V
Sbjct: 25 FREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVXV 84
Query: 587 FELMMRFIYTGNVDVSVDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSE 646
++ +I++G + ++ D QD+++AAD LL LK LC + I+ EN + + + +
Sbjct: 85 XREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIGIRDFAL 144
Query: 647 AY 648
Y
Sbjct: 145 HY 146
>pdb|3HVE|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Gigaxoninbtb3-Box
Length = 256
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 529 FVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAM--FDGGYKEKNAKDVEIPNIRWNV 586
F D V++G++ + L A+S R ++ + + +E+ I V
Sbjct: 25 FREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVXV 84
Query: 587 FELMMRFIYTGNVDVSVDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSE 646
++ +I++G + ++ D QD+++AAD LL LK LC + I+ EN + + + +
Sbjct: 85 XREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIGIRDFAL 144
Query: 647 AY 648
Y
Sbjct: 145 HY 146
>pdb|1CL1|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli
pdb|1CL1|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli
Length = 395
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 275 LAGALQPVIG--LLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPD 332
L G +IG + ++ C E RE A L+GQ AD+ +I RG + + Q +
Sbjct: 212 LVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADT---AYITSRGLRTLGVRLRQHHE 268
Query: 333 SQLK 336
S LK
Sbjct: 269 SSLK 272
>pdb|1CL2|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With Aminoethoxyvinylglycine
pdb|1CL2|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With Aminoethoxyvinylglycine
Length = 395
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 275 LAGALQPVIG--LLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPD 332
L G +IG + ++ C E RE A L+GQ AD+ +I RG + + Q +
Sbjct: 212 LVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADT---AYITSRGLRTLGVRLRQHHE 268
Query: 333 SQLK 336
S LK
Sbjct: 269 SSLK 272
>pdb|2FQ6|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With
N-Hydrazinocarbonylmethyl-2-Trifluoromethyl-Benzamide
pdb|2FQ6|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With
N-Hydrazinocarbonylmethyl-2-Trifluoromethyl-Benzamide
pdb|2GQN|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With N-Hydrazinocarbonylmethyl-2-Nitro-Benzamide
pdb|2GQN|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With N-Hydrazinocarbonylmethyl-2-Nitro-Benzamide
Length = 415
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 275 LAGALQPVIG--LLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPD 332
L G +IG + ++ C E RE A L+GQ AD+ +I RG + + Q +
Sbjct: 232 LVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADT---AYITSRGLRTLGVRLRQHHE 288
Query: 333 SQLK 336
S LK
Sbjct: 289 SSLK 292
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,098,633
Number of Sequences: 62578
Number of extensions: 700664
Number of successful extensions: 2260
Number of sequences better than 100.0: 87
Number of HSP's better than 100.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1748
Number of HSP's gapped (non-prelim): 225
length of query: 704
length of database: 14,973,337
effective HSP length: 106
effective length of query: 598
effective length of database: 8,340,069
effective search space: 4987361262
effective search space used: 4987361262
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)