Query 005282
Match_columns 704
No_of_seqs 499 out of 4204
Neff 10.5
Searched_HMMs 46136
Date Thu Mar 28 20:59:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005282.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005282hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0166 Karyopherin (importin) 100.0 1.1E-38 2.3E-43 319.8 30.4 399 55-504 73-486 (514)
2 PLN03200 cellulose synthase-in 100.0 1.8E-37 3.9E-42 356.3 42.7 446 51-507 191-767 (2102)
3 COG5064 SRP1 Karyopherin (impo 100.0 1.8E-37 4E-42 286.0 21.9 406 52-511 75-503 (526)
4 KOG0166 Karyopherin (importin) 100.0 1.2E-35 2.5E-40 298.0 28.0 362 49-461 109-484 (514)
5 PLN03200 cellulose synthase-in 100.0 2.8E-34 6.1E-39 330.2 40.1 404 52-507 365-814 (2102)
6 COG5064 SRP1 Karyopherin (impo 100.0 4.4E-35 9.6E-40 270.3 20.8 310 63-388 127-442 (526)
7 KOG4224 Armadillo repeat prote 100.0 4.3E-33 9.4E-38 259.4 21.5 389 63-506 97-495 (550)
8 KOG4224 Armadillo repeat prote 100.0 1.2E-33 2.7E-38 263.1 15.3 375 91-520 84-462 (550)
9 PHA02713 hypothetical protein; 99.9 8.3E-26 1.8E-30 243.4 17.7 161 525-687 15-177 (557)
10 KOG4441 Proteins containing BT 99.9 2.9E-25 6.2E-30 237.6 17.0 163 525-687 26-188 (571)
11 PF05804 KAP: Kinesin-associat 99.9 1.2E-22 2.7E-27 216.8 33.7 379 67-506 265-651 (708)
12 PHA02790 Kelch-like protein; P 99.9 3.3E-25 7.2E-30 235.5 14.0 150 528-679 15-168 (480)
13 PHA03098 kelch-like protein; P 99.9 1.3E-24 2.8E-29 237.2 17.5 151 532-686 6-158 (534)
14 KOG4350 Uncharacterized conser 99.9 1.4E-24 3E-29 204.8 10.8 161 527-687 36-199 (620)
15 PF05804 KAP: Kinesin-associat 99.9 4.6E-20 9.9E-25 197.3 34.2 357 47-464 288-650 (708)
16 KOG4500 Rho/Rac GTPase guanine 99.8 1E-18 2.2E-23 167.5 25.0 427 67-506 58-521 (604)
17 KOG4591 Uncharacterized conser 99.8 2.9E-19 6.3E-24 152.4 12.5 194 483-687 21-219 (280)
18 KOG2122 Beta-catenin-binding p 99.8 5.7E-18 1.2E-22 183.1 23.4 365 70-507 213-604 (2195)
19 KOG2075 Topoisomerase TOP1-int 99.8 1.2E-18 2.7E-23 169.6 15.2 164 527-691 106-275 (521)
20 KOG4199 Uncharacterized conser 99.8 1.6E-16 3.6E-21 147.8 27.5 344 119-506 76-446 (461)
21 KOG1048 Neural adherens juncti 99.8 1.1E-17 2.5E-22 174.2 20.7 360 93-506 234-686 (717)
22 PF00651 BTB: BTB/POZ domain; 99.7 6.2E-18 1.3E-22 142.9 9.9 106 527-632 2-110 (111)
23 KOG4682 Uncharacterized conser 99.7 1.1E-17 2.4E-22 158.8 12.5 165 520-685 54-222 (488)
24 KOG4199 Uncharacterized conser 99.7 7.1E-15 1.5E-19 137.1 28.5 311 65-396 121-451 (461)
25 KOG0783 Uncharacterized conser 99.7 7.7E-18 1.7E-22 173.0 9.8 162 533-694 708-876 (1267)
26 KOG1048 Neural adherens juncti 99.7 2.3E-16 5E-21 164.6 19.8 366 144-566 234-684 (717)
27 KOG2122 Beta-catenin-binding p 99.7 2.8E-16 6.1E-21 170.3 20.7 338 51-391 237-603 (2195)
28 PF10508 Proteasom_PSMB: Prote 99.7 3.9E-14 8.6E-19 150.9 32.6 393 68-506 55-464 (503)
29 KOG4500 Rho/Rac GTPase guanine 99.7 8.8E-15 1.9E-19 140.8 23.2 354 117-504 57-431 (604)
30 PF10508 Proteasom_PSMB: Prote 99.7 3.5E-14 7.7E-19 151.3 30.1 362 96-508 42-424 (503)
31 smart00225 BTB Broad-Complex, 99.6 1.6E-15 3.6E-20 122.7 9.4 90 537-626 1-90 (90)
32 PRK09687 putative lyase; Provi 99.5 7.5E-13 1.6E-17 129.2 20.5 254 144-501 24-279 (280)
33 PRK13800 putative oxidoreducta 99.5 5.5E-12 1.2E-16 144.6 28.1 278 90-501 619-896 (897)
34 PF04826 Arm_2: Armadillo-like 99.5 1.7E-12 3.7E-17 123.5 19.2 226 89-338 9-252 (254)
35 PRK09687 putative lyase; Provi 99.5 3.7E-12 8.1E-17 124.3 20.1 255 92-460 23-279 (280)
36 KOG1222 Kinesin associated pro 99.5 3.5E-11 7.5E-16 117.9 25.0 402 40-506 255-665 (791)
37 KOG1222 Kinesin associated pro 99.4 3.7E-11 8E-16 117.7 24.0 355 47-463 302-663 (791)
38 PF04826 Arm_2: Armadillo-like 99.4 4.6E-11 9.9E-16 113.8 22.2 181 63-265 25-206 (254)
39 KOG1293 Proteins containing ar 99.4 4E-11 8.7E-16 122.5 21.2 390 68-506 26-535 (678)
40 KOG2171 Karyopherin (importin) 99.4 1.4E-08 3E-13 111.1 41.6 336 38-388 195-548 (1075)
41 PRK13800 putative oxidoreducta 99.4 2.8E-10 6.1E-15 130.7 28.4 273 52-460 624-896 (897)
42 KOG2171 Karyopherin (importin) 99.3 9.6E-10 2.1E-14 119.9 28.8 382 66-507 95-507 (1075)
43 cd00020 ARM Armadillo/beta-cat 99.3 3.1E-11 6.8E-16 103.5 14.0 117 189-305 3-119 (120)
44 cd00020 ARM Armadillo/beta-cat 99.3 3.6E-11 7.9E-16 103.1 13.4 119 138-264 2-120 (120)
45 cd00256 VATPase_H VATPase_H, r 99.3 5.4E-10 1.2E-14 113.4 22.5 346 143-505 53-426 (429)
46 cd00256 VATPase_H VATPase_H, r 99.3 1.8E-09 3.9E-14 109.6 25.9 320 49-388 53-424 (429)
47 PF01602 Adaptin_N: Adaptin N 99.3 6.9E-10 1.5E-14 122.0 25.0 351 63-506 54-408 (526)
48 PF01602 Adaptin_N: Adaptin N 99.3 6.5E-10 1.4E-14 122.2 23.5 276 63-389 91-369 (526)
49 KOG2023 Nuclear transport rece 99.2 2.7E-10 5.9E-15 116.1 16.8 307 92-462 128-504 (885)
50 KOG2023 Nuclear transport rece 99.2 4.3E-10 9.4E-15 114.6 18.2 309 143-506 128-507 (885)
51 KOG0168 Putative ubiquitin fus 99.2 6E-10 1.3E-14 116.6 19.3 245 64-329 181-436 (1051)
52 KOG2160 Armadillo/beta-catenin 99.2 2.4E-09 5.2E-14 103.2 20.8 194 55-265 87-283 (342)
53 KOG1293 Proteins containing ar 99.2 8.9E-09 1.9E-13 105.7 23.4 152 249-400 391-545 (678)
54 KOG3678 SARM protein (with ste 99.1 2.4E-09 5.2E-14 104.8 15.8 305 229-542 174-499 (832)
55 KOG1241 Karyopherin (importin) 99.1 4.2E-08 9.1E-13 102.2 25.6 427 60-503 226-710 (859)
56 KOG2160 Armadillo/beta-catenin 99.0 2.3E-08 5E-13 96.5 18.9 184 115-306 96-282 (342)
57 PTZ00429 beta-adaptin; Provisi 99.0 4.1E-07 8.8E-12 100.1 30.8 379 67-505 48-434 (746)
58 KOG0168 Putative ubiquitin fus 99.0 9.6E-08 2.1E-12 100.6 24.2 256 94-370 169-436 (1051)
59 KOG3678 SARM protein (with ste 99.0 2.8E-08 6.1E-13 97.5 18.4 277 83-388 171-451 (832)
60 KOG0946 ER-Golgi vesicle-tethe 99.0 3.3E-06 7.1E-11 88.8 34.3 316 37-400 14-358 (970)
61 PTZ00429 beta-adaptin; Provisi 99.0 1E-06 2.3E-11 96.9 31.5 384 67-505 84-472 (746)
62 KOG2759 Vacuolar H+-ATPase V1 99.0 2.9E-07 6.2E-12 90.1 23.1 276 93-388 115-437 (442)
63 KOG1062 Vesicle coat complex A 98.9 1.1E-06 2.3E-11 92.7 28.6 392 61-507 117-547 (866)
64 KOG1241 Karyopherin (importin) 98.9 9.5E-07 2.1E-11 92.4 26.5 318 48-388 128-476 (859)
65 PF03224 V-ATPase_H_N: V-ATPas 98.9 8.7E-08 1.9E-12 96.5 17.6 227 144-380 56-305 (312)
66 KOG2973 Uncharacterized conser 98.8 5.9E-07 1.3E-11 84.2 19.2 294 196-507 6-318 (353)
67 PF03224 V-ATPase_H_N: V-ATPas 98.8 1.1E-07 2.4E-12 95.8 15.7 228 93-339 56-305 (312)
68 KOG0511 Ankyrin repeat protein 98.8 2.6E-08 5.6E-13 94.8 10.0 137 545-682 301-447 (516)
69 KOG2759 Vacuolar H+-ATPase V1 98.8 1.4E-06 3.1E-11 85.3 21.7 340 144-506 66-440 (442)
70 KOG1517 Guanine nucleotide bin 98.8 3E-07 6.5E-12 99.0 17.9 237 65-316 484-742 (1387)
71 KOG0212 Uncharacterized conser 98.8 4.5E-07 9.7E-12 91.6 17.5 354 90-505 82-445 (675)
72 COG5215 KAP95 Karyopherin (imp 98.7 1E-05 2.2E-10 82.0 23.9 425 61-504 231-711 (858)
73 KOG0946 ER-Golgi vesicle-tethe 98.7 1.7E-05 3.6E-10 83.7 25.7 279 59-355 71-407 (970)
74 COG5215 KAP95 Karyopherin (imp 98.6 6E-05 1.3E-09 76.7 28.2 412 41-504 168-627 (858)
75 KOG4413 26S proteasome regulat 98.6 3.5E-05 7.6E-10 72.9 24.7 355 94-483 84-460 (524)
76 KOG0212 Uncharacterized conser 98.6 3.1E-06 6.8E-11 85.6 17.7 321 140-507 81-409 (675)
77 KOG1517 Guanine nucleotide bin 98.6 1.5E-06 3.3E-11 93.7 16.3 243 94-356 474-740 (1387)
78 KOG1824 TATA-binding protein-i 98.5 1.8E-05 3.9E-10 85.0 22.6 414 46-509 565-1041(1233)
79 KOG1059 Vesicle coat complex A 98.5 6.8E-05 1.5E-09 78.4 26.0 229 30-306 132-365 (877)
80 KOG0213 Splicing factor 3b, su 98.5 1.5E-05 3.2E-10 83.3 20.2 388 47-509 509-917 (1172)
81 KOG1824 TATA-binding protein-i 98.5 6.6E-05 1.4E-09 80.8 25.2 435 40-504 426-886 (1233)
82 KOG1062 Vesicle coat complex A 98.5 0.00078 1.7E-08 71.8 32.0 309 117-505 122-452 (866)
83 COG5369 Uncharacterized conser 98.5 1.6E-06 3.6E-11 87.0 11.7 328 39-387 374-739 (743)
84 KOG1061 Vesicle coat complex A 98.4 2.5E-05 5.4E-10 82.8 19.3 384 68-508 30-419 (734)
85 KOG1059 Vesicle coat complex A 98.4 6.3E-05 1.4E-09 78.7 21.6 224 146-399 147-374 (877)
86 TIGR02270 conserved hypothetic 98.4 7.3E-05 1.6E-09 77.0 22.2 240 193-506 54-298 (410)
87 KOG4646 Uncharacterized conser 98.4 3.4E-06 7.3E-11 68.9 9.5 144 194-339 17-161 (173)
88 KOG4413 26S proteasome regulat 98.4 0.00047 1E-08 65.6 24.9 302 86-408 122-459 (524)
89 KOG0213 Splicing factor 3b, su 98.4 3E-05 6.4E-10 81.1 18.4 264 94-391 801-1067(1172)
90 KOG2973 Uncharacterized conser 98.3 4E-05 8.6E-10 72.3 16.7 244 146-405 6-289 (353)
91 COG5181 HSH155 U2 snRNP splice 98.3 2.6E-05 5.5E-10 79.9 15.9 264 93-391 605-872 (975)
92 PF14664 RICTOR_N: Rapamycin-i 98.3 0.00052 1.1E-08 70.0 25.1 316 131-461 13-362 (371)
93 KOG4646 Uncharacterized conser 98.2 9.7E-06 2.1E-10 66.3 9.1 119 166-286 32-150 (173)
94 KOG1789 Endocytosis protein RM 98.2 0.00028 6E-09 76.8 22.4 285 67-371 1788-2141(2235)
95 TIGR02270 conserved hypothetic 98.2 0.00032 6.9E-09 72.4 22.4 211 94-391 88-298 (410)
96 KOG0783 Uncharacterized conser 98.2 1.3E-06 2.7E-11 91.9 4.8 67 533-599 556-634 (1267)
97 KOG1789 Endocytosis protein RM 98.2 0.00082 1.8E-08 73.3 25.2 349 65-463 1454-1883(2235)
98 PF05536 Neurochondrin: Neuroc 98.2 0.00073 1.6E-08 72.8 25.5 241 94-348 7-261 (543)
99 KOG1242 Protein containing ada 98.2 7.3E-05 1.6E-09 77.6 16.9 324 166-507 111-447 (569)
100 PF14664 RICTOR_N: Rapamycin-i 98.2 0.00035 7.5E-09 71.3 21.2 256 217-506 7-271 (371)
101 KOG2838 Uncharacterized conser 98.2 9.2E-06 2E-10 74.2 8.6 155 474-638 181-393 (401)
102 KOG0211 Protein phosphatase 2A 98.1 0.00039 8.4E-09 76.3 22.2 406 63-506 249-666 (759)
103 KOG2734 Uncharacterized conser 98.1 0.0015 3.2E-08 64.9 23.1 267 69-349 102-401 (536)
104 PF05536 Neurochondrin: Neuroc 98.1 0.0039 8.5E-08 67.3 28.8 201 50-266 6-215 (543)
105 KOG1060 Vesicle coat complex A 98.1 0.0023 4.9E-08 68.2 25.7 363 95-507 38-461 (968)
106 KOG2734 Uncharacterized conser 98.0 0.00052 1.1E-08 68.0 18.5 231 173-405 106-365 (536)
107 KOG1060 Vesicle coat complex A 98.0 0.0038 8.2E-08 66.6 24.7 339 63-461 155-531 (968)
108 KOG2716 Polymerase delta-inter 98.0 4.9E-05 1.1E-09 70.0 9.5 95 538-632 7-104 (230)
109 COG1413 FOG: HEAT repeat [Ener 97.9 0.0041 8.8E-08 63.9 24.8 214 92-385 43-269 (335)
110 KOG0915 Uncharacterized conser 97.9 0.0008 1.7E-08 76.6 20.3 327 165-506 971-1308(1702)
111 COG5181 HSH155 U2 snRNP splice 97.9 0.00029 6.4E-09 72.4 15.5 300 144-504 605-912 (975)
112 KOG1242 Protein containing ada 97.9 0.0014 3.1E-08 68.3 20.6 370 93-505 97-484 (569)
113 PF10165 Ric8: Guanine nucleot 97.9 0.00066 1.4E-08 71.5 18.3 276 72-351 2-340 (446)
114 PF00514 Arm: Armadillo/beta-c 97.9 2.1E-05 4.6E-10 51.8 4.5 41 224-264 1-41 (41)
115 KOG1077 Vesicle coat complex A 97.9 0.003 6.4E-08 66.4 21.8 260 117-399 126-407 (938)
116 COG5369 Uncharacterized conser 97.9 6.2E-05 1.4E-09 76.0 9.0 197 114-318 401-606 (743)
117 KOG1061 Vesicle coat complex A 97.8 0.00073 1.6E-08 72.1 16.9 242 67-347 65-307 (734)
118 COG1413 FOG: HEAT repeat [Ener 97.8 0.0039 8.5E-08 64.0 22.1 258 49-397 43-312 (335)
119 PF00514 Arm: Armadillo/beta-c 97.8 3.4E-05 7.3E-10 50.9 4.0 40 81-130 1-40 (41)
120 PF09759 Atx10homo_assoc: Spin 97.7 0.00012 2.5E-09 58.3 7.0 68 167-234 2-71 (102)
121 KOG2259 Uncharacterized conser 97.7 0.00024 5.2E-09 73.8 11.0 269 117-403 194-489 (823)
122 KOG2259 Uncharacterized conser 97.7 0.00018 3.8E-09 74.7 9.8 258 94-391 236-513 (823)
123 PF10165 Ric8: Guanine nucleot 97.7 0.0028 6.1E-08 66.9 18.8 274 174-465 4-339 (446)
124 COG5231 VMA13 Vacuolar H+-ATPa 97.7 0.0029 6.4E-08 60.1 16.5 227 64-305 162-427 (432)
125 COG5240 SEC21 Vesicle coat com 97.7 0.015 3.3E-07 59.8 22.5 350 63-504 202-555 (898)
126 PF13646 HEAT_2: HEAT repeats; 97.6 0.00019 4.2E-09 57.1 7.3 86 195-302 1-88 (88)
127 PF12348 CLASP_N: CLASP N term 97.6 0.00056 1.2E-08 65.8 11.8 184 287-507 17-209 (228)
128 KOG1077 Vesicle coat complex A 97.6 0.0092 2E-07 62.9 20.2 156 237-403 331-502 (938)
129 COG5240 SEC21 Vesicle coat com 97.6 0.06 1.3E-06 55.7 25.4 324 69-485 245-579 (898)
130 PF07707 BACK: BTB And C-termi 97.6 0.00015 3.3E-09 59.7 6.2 50 638-687 1-50 (103)
131 KOG1240 Protein kinase contain 97.6 0.0024 5.1E-08 71.2 16.7 281 67-389 439-725 (1431)
132 KOG2838 Uncharacterized conser 97.6 0.00025 5.4E-09 65.1 7.9 88 532-619 127-219 (401)
133 COG5231 VMA13 Vacuolar H+-ATPa 97.6 0.0042 9.1E-08 59.1 15.9 221 166-388 164-427 (432)
134 PF12348 CLASP_N: CLASP N term 97.6 0.0008 1.7E-08 64.7 12.0 180 203-389 17-206 (228)
135 KOG1943 Beta-tubulin folding c 97.6 0.032 7E-07 62.1 24.9 252 235-504 341-611 (1133)
136 KOG0915 Uncharacterized conser 97.6 0.026 5.5E-07 65.0 24.3 287 93-400 999-1319(1702)
137 PF02214 BTB_2: BTB/POZ domain 97.5 0.00019 4.1E-09 57.8 6.0 87 538-625 1-94 (94)
138 KOG0211 Protein phosphatase 2A 97.5 0.01 2.2E-07 65.5 20.4 332 117-506 174-510 (759)
139 KOG3473 RNA polymerase II tran 97.5 0.00047 1E-08 52.4 7.0 79 538-617 19-111 (112)
140 KOG0567 HEAT repeat-containing 97.5 0.016 3.4E-07 54.1 18.1 199 90-347 65-279 (289)
141 PF13646 HEAT_2: HEAT repeats; 97.5 0.00044 9.4E-09 55.0 7.1 86 279-385 1-88 (88)
142 PF09759 Atx10homo_assoc: Spin 97.4 0.00059 1.3E-08 54.4 6.6 68 118-191 2-70 (102)
143 PF12460 MMS19_C: RNAPII trans 97.3 0.015 3.4E-07 61.2 18.9 358 94-506 1-396 (415)
144 KOG1943 Beta-tubulin folding c 97.3 0.04 8.6E-07 61.4 22.0 256 92-389 341-611 (1133)
145 KOG1240 Protein kinase contain 97.3 0.0084 1.8E-07 67.1 16.3 242 117-389 438-685 (1431)
146 smart00512 Skp1 Found in Skp1 97.2 0.0019 4.2E-08 52.9 8.4 80 538-618 4-104 (104)
147 KOG0567 HEAT repeat-containing 97.2 0.036 7.9E-07 51.8 17.2 180 167-389 52-249 (289)
148 KOG1987 Speckle-type POZ prote 97.2 0.00014 2.9E-09 73.2 1.7 131 544-674 109-244 (297)
149 PF13513 HEAT_EZ: HEAT-like re 97.2 0.00064 1.4E-08 48.3 4.6 55 333-387 1-55 (55)
150 COG5096 Vesicle coat complex, 97.1 0.61 1.3E-05 51.5 27.6 161 117-306 34-195 (757)
151 PF06025 DUF913: Domain of Unk 97.1 0.11 2.4E-06 53.4 21.1 168 121-289 3-208 (379)
152 KOG3036 Protein involved in ce 97.1 0.045 9.7E-07 50.5 15.8 181 68-263 96-290 (293)
153 smart00875 BACK BTB And C-term 97.0 0.001 2.2E-08 54.5 5.0 50 638-687 1-50 (101)
154 PF13513 HEAT_EZ: HEAT-like re 97.0 0.001 2.2E-08 47.2 4.3 55 207-262 1-55 (55)
155 smart00185 ARM Armadillo/beta- 97.0 0.0017 3.8E-08 42.6 5.0 39 225-263 2-40 (41)
156 KOG4535 HEAT and armadillo rep 97.0 0.042 9.1E-07 55.6 16.3 268 202-502 304-601 (728)
157 KOG1724 SCF ubiquitin ligase, 97.0 0.0094 2E-07 52.2 10.5 90 543-633 13-127 (162)
158 PF08569 Mo25: Mo25-like; Int 97.0 0.081 1.8E-06 53.1 18.4 201 86-306 70-283 (335)
159 KOG4151 Myosin assembly protei 96.9 0.005 1.1E-07 66.2 10.3 225 81-327 493-720 (748)
160 KOG1058 Vesicle coat complex C 96.9 0.25 5.4E-06 53.2 22.0 233 249-501 220-460 (948)
161 PF11841 DUF3361: Domain of un 96.9 0.039 8.4E-07 48.0 13.2 131 135-268 3-135 (160)
162 PF08569 Mo25: Mo25-like; Int 96.9 0.027 5.8E-07 56.5 14.2 208 189-399 72-293 (335)
163 smart00185 ARM Armadillo/beta- 96.8 0.0026 5.7E-08 41.7 4.5 37 185-221 4-40 (41)
164 KOG2032 Uncharacterized conser 96.8 0.14 3E-06 52.4 18.1 140 245-385 268-412 (533)
165 PF11822 DUF3342: Domain of un 96.8 0.002 4.3E-08 62.3 5.2 87 545-633 14-104 (317)
166 PF12460 MMS19_C: RNAPII trans 96.7 0.43 9.4E-06 50.4 23.1 339 66-465 17-396 (415)
167 KOG0511 Ankyrin repeat protein 96.7 0.0055 1.2E-07 59.5 7.7 100 524-625 136-238 (516)
168 PF04078 Rcd1: Cell differenti 96.7 0.014 3E-07 55.0 10.2 179 68-262 67-260 (262)
169 PF03931 Skp1_POZ: Skp1 family 96.7 0.0087 1.9E-07 43.4 7.0 56 538-596 3-59 (62)
170 PF07814 WAPL: Wings apart-lik 96.7 0.11 2.4E-06 53.4 17.7 289 39-351 15-358 (361)
171 PRK14707 hypothetical protein; 96.7 1.3 2.8E-05 53.7 27.0 413 66-500 305-735 (2710)
172 PF13764 E3_UbLigase_R4: E3 ub 96.6 0.36 7.9E-06 54.1 22.2 199 86-291 111-333 (802)
173 KOG1832 HIV-1 Vpr-binding prot 96.6 0.21 4.6E-06 54.5 19.3 346 117-474 368-784 (1516)
174 KOG3036 Protein involved in ce 96.6 0.18 4E-06 46.6 16.2 150 120-274 97-256 (293)
175 KOG1058 Vesicle coat complex C 96.6 0.4 8.7E-06 51.6 20.5 215 93-351 244-466 (948)
176 PF11841 DUF3361: Domain of un 96.6 0.039 8.4E-07 48.0 11.0 136 84-229 3-138 (160)
177 PF12755 Vac14_Fab1_bd: Vacuol 96.5 0.015 3.2E-07 46.5 7.8 91 294-386 3-93 (97)
178 KOG4535 HEAT and armadillo rep 96.5 0.021 4.6E-07 57.6 10.4 184 205-389 403-603 (728)
179 PRK14707 hypothetical protein; 96.5 1.8 3.8E-05 52.6 26.8 334 67-420 264-602 (2710)
180 KOG1991 Nuclear transport rece 96.5 1.2 2.5E-05 49.9 24.1 313 60-400 427-812 (1010)
181 PF12717 Cnd1: non-SMC mitotic 96.5 0.19 4.1E-06 45.9 15.9 92 206-307 1-93 (178)
182 KOG4151 Myosin assembly protei 96.5 0.035 7.6E-07 60.0 12.5 205 131-349 492-700 (748)
183 KOG1078 Vesicle coat complex C 96.4 1.9 4.1E-05 47.1 28.0 272 166-506 260-534 (865)
184 KOG2062 26S proteasome regulat 96.4 0.67 1.5E-05 49.9 21.1 129 238-388 522-652 (929)
185 KOG1248 Uncharacterized conser 96.3 1.5 3.3E-05 50.1 24.3 220 166-388 669-897 (1176)
186 KOG2274 Predicted importin 9 [ 96.3 0.56 1.2E-05 51.7 20.3 319 46-397 446-789 (1005)
187 KOG1991 Nuclear transport rece 96.3 2 4.4E-05 48.1 24.6 260 121-389 391-671 (1010)
188 PF04078 Rcd1: Cell differenti 96.3 0.27 5.9E-06 46.5 15.7 228 115-346 8-260 (262)
189 PF12755 Vac14_Fab1_bd: Vacuol 96.2 0.036 7.8E-07 44.4 8.3 90 210-304 3-94 (97)
190 PF12717 Cnd1: non-SMC mitotic 96.2 0.44 9.5E-06 43.5 16.6 93 248-349 1-93 (178)
191 KOG1020 Sister chromatid cohes 96.1 3.1 6.8E-05 49.0 25.8 147 42-222 809-960 (1692)
192 COG5096 Vesicle coat complex, 96.1 3 6.6E-05 46.3 27.7 102 94-222 94-195 (757)
193 PF11698 V-ATPase_H_C: V-ATPas 96.0 0.012 2.6E-07 48.3 5.0 71 194-264 44-115 (119)
194 PF07814 WAPL: Wings apart-lik 96.0 0.48 1E-05 48.7 17.8 272 94-390 23-356 (361)
195 KOG2062 26S proteasome regulat 96.0 0.92 2E-05 49.0 19.3 162 193-377 519-682 (929)
196 COG5656 SXM1 Importin, protein 95.8 2.8 6.1E-05 45.5 22.1 322 42-388 405-756 (970)
197 PF08045 CDC14: Cell division 95.7 0.2 4.4E-06 47.7 12.3 98 166-263 106-206 (257)
198 KOG1078 Vesicle coat complex C 95.6 2.1 4.5E-05 46.8 20.6 236 117-388 260-531 (865)
199 KOG1665 AFH1-interacting prote 95.6 0.042 9.2E-07 49.4 7.0 91 537-627 10-105 (302)
200 KOG4653 Uncharacterized conser 95.5 0.33 7.1E-06 53.1 14.1 212 117-346 742-962 (982)
201 PF08045 CDC14: Cell division 95.4 0.28 6.1E-06 46.8 12.3 99 67-180 107-207 (257)
202 PF11698 V-ATPase_H_C: V-ATPas 95.4 0.043 9.2E-07 45.2 5.9 71 236-306 44-115 (119)
203 PF06025 DUF913: Domain of Unk 95.3 2 4.3E-05 44.4 18.8 108 86-205 99-208 (379)
204 KOG2274 Predicted importin 9 [ 95.2 5.2 0.00011 44.6 22.1 222 117-353 465-694 (1005)
205 KOG1248 Uncharacterized conser 95.2 2.5 5.4E-05 48.5 20.2 221 116-348 668-898 (1176)
206 KOG1832 HIV-1 Vpr-binding prot 95.2 0.77 1.7E-05 50.4 15.6 159 231-400 597-784 (1516)
207 PF11701 UNC45-central: Myosin 95.1 0.23 5E-06 44.1 10.1 148 92-261 3-156 (157)
208 KOG1967 DNA repair/transcripti 95.1 0.46 1E-05 52.5 14.0 185 197-387 819-1022(1030)
209 PF05004 IFRD: Interferon-rela 95.1 1.2 2.5E-05 44.7 16.2 182 65-265 57-258 (309)
210 PF02985 HEAT: HEAT repeat; I 95.0 0.038 8.2E-07 33.5 3.4 29 237-265 2-30 (31)
211 KOG2025 Chromosome condensatio 94.9 1.4 2.9E-05 47.5 16.3 198 276-502 84-292 (892)
212 PF12719 Cnd3: Nuclear condens 94.8 0.86 1.9E-05 45.6 14.7 170 193-371 26-208 (298)
213 KOG2025 Chromosome condensatio 94.8 3.6 7.9E-05 44.5 19.1 143 49-217 44-188 (892)
214 KOG1967 DNA repair/transcripti 94.8 0.25 5.3E-06 54.5 11.1 150 193-345 867-1021(1030)
215 KOG1566 Conserved protein Mo25 94.8 3 6.4E-05 40.5 16.9 207 189-397 75-294 (342)
216 PF04063 DUF383: Domain of unk 94.8 0.11 2.5E-06 47.4 7.5 126 330-484 6-153 (192)
217 PF05918 API5: Apoptosis inhib 94.8 1.4 3.1E-05 47.1 16.4 284 66-397 37-354 (556)
218 PF12719 Cnd3: Nuclear condens 94.7 0.34 7.3E-06 48.6 11.4 150 241-398 33-195 (298)
219 PF04063 DUF383: Domain of unk 94.7 0.23 4.9E-06 45.5 9.2 113 245-359 5-143 (192)
220 PF05918 API5: Apoptosis inhib 94.7 0.88 1.9E-05 48.7 14.7 165 166-348 37-207 (556)
221 PF14668 RICTOR_V: Rapamycin-i 94.7 0.1 2.2E-06 38.9 5.6 67 336-402 4-71 (73)
222 KOG2999 Regulator of Rac1, req 94.7 0.72 1.6E-05 47.9 13.3 159 95-268 86-246 (713)
223 KOG2715 Uncharacterized conser 94.6 0.16 3.6E-06 43.5 7.2 96 536-631 21-120 (210)
224 KOG2714 SETA binding protein S 94.5 0.15 3.3E-06 51.0 8.0 87 537-623 12-102 (465)
225 PF11701 UNC45-central: Myosin 94.2 0.22 4.8E-06 44.3 7.8 146 194-345 4-156 (157)
226 PF02985 HEAT: HEAT repeat; I 94.2 0.074 1.6E-06 32.2 3.4 29 477-505 2-30 (31)
227 PF05004 IFRD: Interferon-rela 94.2 0.56 1.2E-05 47.0 11.5 171 40-222 77-257 (309)
228 KOG2032 Uncharacterized conser 94.0 4.9 0.00011 41.6 17.5 232 10-263 167-414 (533)
229 KOG1788 Uncharacterized conser 94.0 14 0.0003 42.1 23.6 386 67-485 483-960 (2799)
230 KOG4464 Signaling protein RIC- 94.0 2.3 5.1E-05 42.7 14.6 106 115-223 110-232 (532)
231 KOG4464 Signaling protein RIC- 94.0 3.5 7.5E-05 41.5 15.8 143 95-246 48-198 (532)
232 PF13764 E3_UbLigase_R4: E3 ub 93.9 1.2 2.6E-05 50.1 14.4 214 189-406 113-381 (802)
233 KOG4653 Uncharacterized conser 93.9 1.5 3.2E-05 48.4 14.3 178 65-267 741-921 (982)
234 KOG1778 CREB binding protein/P 93.9 0.049 1.1E-06 53.6 3.2 139 537-676 28-169 (319)
235 PF14668 RICTOR_V: Rapamycin-i 93.8 0.32 7E-06 36.3 6.6 67 68-143 4-70 (73)
236 KOG1243 Protein kinase [Genera 93.6 0.61 1.3E-05 50.2 10.9 188 190-388 327-514 (690)
237 KOG0414 Chromosome condensatio 93.4 0.62 1.3E-05 53.0 11.0 162 145-331 921-1083(1251)
238 KOG1020 Sister chromatid cohes 93.4 21 0.00046 42.5 22.9 140 236-388 817-959 (1692)
239 KOG1566 Conserved protein Mo25 93.2 8.9 0.00019 37.4 17.8 204 137-351 73-289 (342)
240 COG5116 RPN2 26S proteasome re 93.1 6.8 0.00015 41.3 16.8 155 197-374 520-676 (926)
241 KOG0414 Chromosome condensatio 93.1 1.4 3E-05 50.3 12.9 163 93-289 920-1083(1251)
242 KOG1243 Protein kinase [Genera 92.9 1.2 2.6E-05 48.0 11.7 243 68-347 271-514 (690)
243 PF11707 Npa1: Ribosome 60S bi 92.8 10 0.00022 38.6 18.2 164 237-400 58-248 (330)
244 PF06371 Drf_GBD: Diaphanous G 92.7 0.42 9.2E-06 44.1 7.6 117 93-221 67-186 (187)
245 KOG2956 CLIP-associating prote 92.5 6.7 0.00014 40.4 15.6 170 166-347 302-476 (516)
246 COG5098 Chromosome condensatio 92.4 2.9 6.3E-05 45.0 13.5 211 164-399 909-1123(1128)
247 COG5209 RCD1 Uncharacterized p 92.4 2 4.3E-05 39.4 10.7 149 68-230 117-275 (315)
248 COG5201 SKP1 SCF ubiquitin lig 92.2 1.4 3.1E-05 36.0 8.6 95 537-634 3-123 (158)
249 PF12530 DUF3730: Protein of u 92.2 9.3 0.0002 36.6 16.1 198 62-291 12-217 (234)
250 KOG2956 CLIP-associating prote 92.2 7.8 0.00017 40.0 15.6 172 63-263 299-476 (516)
251 KOG3665 ZYG-1-like serine/thre 91.6 1.9 4E-05 48.4 11.9 176 300-485 494-677 (699)
252 COG5218 YCG1 Chromosome conden 91.5 21 0.00046 38.0 18.2 110 79-215 80-192 (885)
253 PF12530 DUF3730: Protein of u 91.4 14 0.0003 35.4 16.9 126 115-264 14-151 (234)
254 KOG2999 Regulator of Rac1, req 91.3 7.7 0.00017 40.8 14.7 153 195-349 85-243 (713)
255 PF08506 Cse1: Cse1; InterPro 90.9 20 0.00044 36.9 17.7 240 117-384 111-370 (370)
256 KOG3665 ZYG-1-like serine/thre 90.5 5.7 0.00012 44.7 14.4 179 74-287 494-677 (699)
257 KOG2611 Neurochondrin/leucine- 90.5 20 0.00043 37.2 16.5 187 68-263 28-224 (698)
258 COG5098 Chromosome condensatio 90.1 8.2 0.00018 41.7 14.0 183 196-399 895-1086(1128)
259 PF01347 Vitellogenin_N: Lipop 89.4 26 0.00056 39.5 19.0 202 93-343 396-617 (618)
260 KOG1820 Microtubule-associated 89.4 11 0.00024 42.7 15.4 185 196-389 256-443 (815)
261 COG5209 RCD1 Uncharacterized p 89.3 3.8 8.3E-05 37.6 9.6 147 121-272 119-275 (315)
262 COG5218 YCG1 Chromosome conden 89.3 22 0.00047 37.9 16.0 116 276-399 90-206 (885)
263 KOG1820 Microtubule-associated 89.2 11 0.00025 42.7 15.3 173 164-348 266-443 (815)
264 PF01466 Skp1: Skp1 family, di 89.0 1 2.2E-05 34.4 5.1 49 601-649 11-62 (78)
265 COG5116 RPN2 26S proteasome re 88.3 8.4 0.00018 40.6 12.3 98 276-388 550-649 (926)
266 PF10363 DUF2435: Protein of u 88.3 1.8 3.9E-05 34.2 6.2 72 195-268 5-76 (92)
267 KOG1992 Nuclear export recepto 88.2 40 0.00086 37.7 17.7 171 195-370 500-705 (960)
268 KOG2137 Protein kinase [Signal 88.1 11 0.00023 41.3 13.5 134 233-376 387-524 (700)
269 PF13251 DUF4042: Domain of un 88.0 14 0.00031 33.5 12.5 158 335-507 2-177 (182)
270 KOG2933 Uncharacterized conser 87.7 7.2 0.00016 38.0 10.8 141 195-348 90-234 (334)
271 KOG2611 Neurochondrin/leucine- 87.7 38 0.00083 35.2 17.4 126 117-245 26-162 (698)
272 PF10363 DUF2435: Protein of u 87.0 2.6 5.6E-05 33.3 6.3 72 237-310 5-76 (92)
273 PF11864 DUF3384: Domain of un 86.9 49 0.0011 35.6 26.2 276 46-348 25-330 (464)
274 PF06371 Drf_GBD: Diaphanous G 86.3 1.9 4E-05 39.8 6.3 78 185-263 99-186 (187)
275 PF11865 DUF3385: Domain of un 85.4 8.6 0.00019 34.2 9.7 148 46-221 7-156 (160)
276 KOG1788 Uncharacterized conser 85.2 59 0.0013 37.5 17.2 262 72-349 663-983 (2799)
277 PF11707 Npa1: Ribosome 60S bi 85.2 46 0.001 33.8 20.3 158 195-352 58-241 (330)
278 smart00638 LPD_N Lipoprotein N 85.1 68 0.0015 35.7 20.4 164 144-341 394-571 (574)
279 KOG2933 Uncharacterized conser 84.2 17 0.00037 35.5 11.4 139 279-461 90-232 (334)
280 KOG1525 Sister chromatid cohes 83.3 80 0.0017 38.1 18.6 175 318-492 258-441 (1266)
281 KOG0301 Phospholipase A2-activ 83.3 48 0.001 36.1 15.2 179 200-383 551-740 (745)
282 PF08167 RIX1: rRNA processing 83.1 14 0.00029 33.2 10.1 110 236-349 26-144 (165)
283 PF08324 PUL: PUL domain; Int 83.0 7.7 0.00017 38.1 9.3 150 117-271 78-238 (268)
284 PF01347 Vitellogenin_N: Lipop 82.3 13 0.00029 41.8 12.0 198 144-384 396-617 (618)
285 PF14225 MOR2-PAG1_C: Cell mor 81.3 56 0.0012 31.8 15.6 174 197-388 68-256 (262)
286 PF11865 DUF3385: Domain of un 81.2 13 0.00028 33.1 9.1 143 236-387 11-155 (160)
287 PF08167 RIX1: rRNA processing 80.6 16 0.00034 32.8 9.5 115 193-311 25-148 (165)
288 PF08324 PUL: PUL domain; Int 80.3 17 0.00036 35.8 10.6 162 196-359 66-242 (268)
289 PF12031 DUF3518: Domain of un 80.3 6.5 0.00014 36.9 6.9 82 208-290 139-229 (257)
290 PF12031 DUF3518: Domain of un 80.2 1.4 3E-05 41.1 2.6 89 374-488 138-229 (257)
291 PF11822 DUF3342: Domain of un 79.6 1.4 3.1E-05 43.1 2.6 55 631-685 70-125 (317)
292 KOG2137 Protein kinase [Signal 79.6 31 0.00066 38.0 12.5 133 91-247 388-520 (700)
293 PF13251 DUF4042: Domain of un 77.5 51 0.0011 30.0 11.7 114 195-308 42-176 (182)
294 PF12231 Rif1_N: Rap1-interact 76.6 99 0.0022 32.1 20.6 293 37-347 27-351 (372)
295 KOG0413 Uncharacterized conser 76.4 13 0.00028 42.0 8.8 130 165-310 945-1077(1529)
296 KOG1949 Uncharacterized conser 76.4 36 0.00079 37.2 11.7 149 196-348 177-331 (1005)
297 PF04869 Uso1_p115_head: Uso1 75.9 91 0.002 31.3 14.2 141 165-305 52-230 (312)
298 PF12830 Nipped-B_C: Sister ch 75.8 65 0.0014 29.5 13.8 73 194-271 9-81 (187)
299 smart00638 LPD_N Lipoprotein N 75.3 41 0.0009 37.4 13.1 139 94-262 395-543 (574)
300 KOG1949 Uncharacterized conser 75.0 49 0.0011 36.3 12.2 186 95-305 177-369 (1005)
301 KOG3840 Uncharaterized conserv 73.2 5.1 0.00011 38.4 4.2 84 536-619 96-185 (438)
302 PF11864 DUF3384: Domain of un 72.9 1.4E+02 0.0031 32.1 21.7 90 292-388 230-329 (464)
303 KOG1822 Uncharacterized conser 72.5 1.5E+02 0.0033 36.9 16.5 247 238-504 879-1127(2067)
304 KOG2676 Uncharacterized conser 72.0 5.2 0.00011 39.5 4.1 64 171-234 376-441 (478)
305 cd03561 VHS VHS domain family; 72.0 22 0.00048 30.5 7.7 72 236-307 38-113 (133)
306 PF12231 Rif1_N: Rap1-interact 71.8 1.3E+02 0.0028 31.2 21.5 264 111-388 55-351 (372)
307 KOG0413 Uncharacterized conser 70.7 26 0.00056 39.7 9.4 130 113-265 942-1074(1529)
308 cd03568 VHS_STAM VHS domain fa 70.0 44 0.00094 29.1 9.1 72 193-264 37-110 (144)
309 PF14726 RTTN_N: Rotatin, an a 69.5 41 0.00089 26.9 8.0 68 275-343 28-95 (98)
310 PF04869 Uso1_p115_head: Uso1 69.3 1.3E+02 0.0028 30.2 14.7 147 116-264 52-231 (312)
311 cd03561 VHS VHS domain family; 68.9 63 0.0014 27.7 9.9 73 193-265 37-113 (133)
312 PF10521 DUF2454: Protein of u 68.4 34 0.00073 33.9 9.3 78 93-180 120-203 (282)
313 cd03568 VHS_STAM VHS domain fa 68.3 24 0.00053 30.7 7.2 72 236-307 38-111 (144)
314 cd03569 VHS_Hrs_Vps27p VHS dom 68.2 25 0.00055 30.5 7.3 71 236-306 42-114 (142)
315 cd03569 VHS_Hrs_Vps27p VHS dom 67.6 63 0.0014 28.0 9.6 72 193-264 41-114 (142)
316 PF14726 RTTN_N: Rotatin, an a 66.6 55 0.0012 26.2 8.2 69 317-385 28-96 (98)
317 PF14500 MMS19_N: Dos2-interac 66.2 1.4E+02 0.0029 29.2 16.5 212 115-350 12-239 (262)
318 KOG0301 Phospholipase A2-activ 65.9 1.9E+02 0.0041 31.9 14.1 157 68-245 561-726 (745)
319 COG5656 SXM1 Importin, protein 65.8 2.3E+02 0.005 31.8 23.5 122 142-266 407-530 (970)
320 PF10274 ParcG: Parkin co-regu 64.3 1.1E+02 0.0025 27.7 11.0 82 193-274 38-119 (183)
321 PF07707 BACK: BTB And C-termi 64.2 11 0.00024 30.3 4.2 60 607-666 2-75 (103)
322 KOG2011 Sister chromatid cohes 63.1 1.7E+02 0.0037 34.4 14.1 136 245-388 297-434 (1048)
323 PF14631 FancD2: Fanconi anaem 62.5 4E+02 0.0086 33.3 19.8 107 236-348 432-542 (1426)
324 PF10521 DUF2454: Protein of u 61.8 71 0.0015 31.6 10.1 70 236-305 120-202 (282)
325 KOG1992 Nuclear export recepto 61.8 2.8E+02 0.0062 31.5 19.3 248 118-389 263-527 (960)
326 PF14500 MMS19_N: Dos2-interac 61.5 1.7E+02 0.0036 28.7 15.3 215 63-308 11-239 (262)
327 cd03567 VHS_GGA VHS domain fam 60.3 45 0.00097 28.8 7.2 71 236-306 39-116 (139)
328 PF06685 DUF1186: Protein of u 59.1 1.7E+02 0.0038 28.1 12.0 127 93-243 32-161 (249)
329 KOG1848 Uncharacterized conser 58.6 3.4E+02 0.0073 33.0 15.4 93 166-263 857-957 (1610)
330 PF12830 Nipped-B_C: Sister ch 58.4 1.5E+02 0.0032 27.2 11.1 143 236-389 9-167 (187)
331 smart00288 VHS Domain present 58.0 48 0.001 28.4 7.1 71 236-306 38-111 (133)
332 PRK09169 hypothetical protein; 56.8 5.6E+02 0.012 33.3 24.6 102 68-187 181-284 (2316)
333 PLN03076 ARF guanine nucleotid 56.6 5.3E+02 0.012 33.0 20.5 131 166-304 1152-1297(1780)
334 cd03567 VHS_GGA VHS domain fam 56.1 1.3E+02 0.0029 25.9 9.6 94 162-264 16-116 (139)
335 PF12726 SEN1_N: SEN1 N termin 55.3 1.4E+02 0.0031 34.3 12.5 141 197-349 445-586 (727)
336 KOG2723 Uncharacterized conser 54.3 24 0.00051 33.0 4.8 95 534-629 6-106 (221)
337 KOG0392 SNF2 family DNA-depend 54.3 1.4E+02 0.0031 35.5 11.6 239 93-349 78-326 (1549)
338 smart00288 VHS Domain present 53.9 1E+02 0.0023 26.3 8.6 72 193-264 37-111 (133)
339 PF01603 B56: Protein phosphat 53.1 2.6E+02 0.0056 29.5 13.0 217 162-385 101-322 (409)
340 PF01365 RYDR_ITPR: RIH domain 52.8 37 0.00081 31.7 6.2 110 134-246 34-153 (207)
341 PF13001 Ecm29: Proteasome sta 52.7 1E+02 0.0022 33.5 10.2 172 204-389 248-443 (501)
342 KOG2676 Uncharacterized conser 52.2 18 0.00038 35.9 3.8 64 212-275 375-440 (478)
343 PF01365 RYDR_ITPR: RIH domain 52.2 37 0.0008 31.8 6.0 79 207-288 75-153 (207)
344 PF01603 B56: Protein phosphat 50.6 1.8E+02 0.0039 30.7 11.3 233 88-350 129-372 (409)
345 PF03130 HEAT_PBS: PBS lyase H 50.6 20 0.00044 20.6 2.5 26 450-485 1-26 (27)
346 KOG0891 DNA-dependent protein 49.8 2.1E+02 0.0046 37.3 13.1 185 198-389 486-677 (2341)
347 PF00651 BTB: BTB/POZ domain; 49.5 29 0.00062 28.3 4.4 31 634-664 80-110 (111)
348 PRK09169 hypothetical protein; 48.8 7.4E+02 0.016 32.3 24.5 15 248-262 371-385 (2316)
349 PF13001 Ecm29: Proteasome sta 47.6 1.9E+02 0.0042 31.4 11.4 179 117-309 252-446 (501)
350 PF00790 VHS: VHS domain; Int 47.2 44 0.00095 28.9 5.3 71 236-306 43-118 (140)
351 PF11791 Aconitase_B_N: Aconit 46.8 53 0.0011 28.5 5.4 28 362-389 96-123 (154)
352 PF08506 Cse1: Cse1; InterPro 46.6 3.5E+02 0.0077 28.0 15.9 127 166-301 226-370 (370)
353 PF08216 CTNNBL: Catenin-beta- 46.6 25 0.00053 28.6 3.2 43 210-253 63-105 (108)
354 KOG4231 Intracellular membrane 46.4 21 0.00046 37.2 3.5 67 196-263 331-398 (763)
355 PF12074 DUF3554: Domain of un 46.4 3.4E+02 0.0073 27.7 13.7 216 118-352 3-239 (339)
356 PF06012 DUF908: Domain of Unk 46.4 2.8E+02 0.0061 28.2 11.7 66 117-187 237-304 (329)
357 PF08216 CTNNBL: Catenin-beta- 46.3 24 0.00051 28.7 3.1 39 68-106 63-101 (108)
358 PF14225 MOR2-PAG1_C: Cell mor 45.4 3E+02 0.0065 26.8 20.1 162 166-347 77-253 (262)
359 PF11791 Aconitase_B_N: Aconit 44.9 43 0.00094 29.0 4.6 44 294-348 80-123 (154)
360 KOG4350 Uncharacterized conser 44.7 46 0.00099 33.7 5.4 57 575-631 106-175 (620)
361 PF12463 DUF3689: Protein of u 44.5 3.4E+02 0.0073 27.1 12.6 135 85-226 2-177 (303)
362 PF00790 VHS: VHS domain; Int 43.3 2.2E+02 0.0047 24.6 9.0 72 193-264 42-118 (140)
363 KOG1993 Nuclear transport rece 43.1 5.5E+02 0.012 29.2 18.4 323 52-399 488-823 (978)
364 PF10274 ParcG: Parkin co-regu 42.5 2.5E+02 0.0054 25.6 9.2 73 144-224 39-111 (183)
365 KOG1848 Uncharacterized conser 42.5 2.6E+02 0.0057 33.8 11.4 19 204-222 853-871 (1610)
366 KOG2075 Topoisomerase TOP1-int 42.3 37 0.0008 35.3 4.5 45 632-679 184-228 (521)
367 KOG2073 SAP family cell cycle 41.9 2E+02 0.0044 33.1 10.5 185 83-289 181-377 (838)
368 PF12054 DUF3535: Domain of un 41.5 4.6E+02 0.0099 28.0 12.7 109 208-320 102-211 (441)
369 PF06685 DUF1186: Protein of u 40.6 3.5E+02 0.0075 26.2 13.7 73 233-317 71-153 (249)
370 KOG1525 Sister chromatid cohes 40.6 7.8E+02 0.017 30.2 18.6 146 235-388 259-404 (1266)
371 PF12074 DUF3554: Domain of un 40.1 4.2E+02 0.0091 27.0 15.1 178 93-287 62-254 (339)
372 cd08050 TAF6 TATA Binding Prot 38.9 1E+02 0.0022 31.5 7.2 138 74-221 198-339 (343)
373 PHA03098 kelch-like protein; P 38.4 89 0.0019 34.4 7.3 85 601-686 105-211 (534)
374 PF12463 DUF3689: Protein of u 37.9 4.3E+02 0.0092 26.4 13.6 136 136-271 2-180 (303)
375 KOG0891 DNA-dependent protein 37.1 1.1E+03 0.025 31.2 17.1 199 189-389 561-763 (2341)
376 PF04388 Hamartin: Hamartin pr 36.5 2.9E+02 0.0062 31.4 10.7 56 166-221 83-139 (668)
377 KOG1410 Nuclear transport rece 35.9 6.6E+02 0.014 28.0 17.9 138 63-222 18-157 (1082)
378 PF08767 CRM1_C: CRM1 C termin 35.8 4.8E+02 0.01 26.4 13.0 187 117-305 42-243 (319)
379 PLN03076 ARF guanine nucleotid 35.6 1.1E+03 0.023 30.5 22.5 132 117-262 1152-1297(1780)
380 cd03572 ENTH_epsin_related ENT 33.5 2.9E+02 0.0063 23.2 8.6 73 94-179 40-118 (122)
381 PF08389 Xpo1: Exportin 1-like 33.4 96 0.0021 26.7 5.4 71 43-126 76-148 (148)
382 KOG4524 Uncharacterized conser 33.0 2.5E+02 0.0055 32.4 9.3 103 42-156 796-902 (1014)
383 cd08050 TAF6 TATA Binding Prot 31.5 4.7E+02 0.01 26.7 10.6 109 278-387 211-338 (343)
384 smart00567 EZ_HEAT E-Z type HE 30.4 56 0.0012 19.1 2.3 28 449-486 2-29 (30)
385 PF08389 Xpo1: Exportin 1-like 28.9 3E+02 0.0066 23.5 7.9 49 249-301 100-148 (148)
386 PF01466 Skp1: Skp1 family, di 27.2 1.5E+02 0.0033 22.5 4.7 35 632-666 10-44 (78)
387 PF12765 Cohesin_HEAT: HEAT re 26.5 62 0.0013 21.1 2.2 26 192-217 17-42 (42)
388 PF08767 CRM1_C: CRM1 C termin 26.5 6.8E+02 0.015 25.3 10.9 137 250-389 42-194 (319)
389 PF12783 Sec7_N: Guanine nucle 26.4 4.3E+02 0.0093 23.5 8.5 81 273-354 69-152 (168)
390 PF14663 RasGEF_N_2: Rapamycin 25.9 1.4E+02 0.0029 24.9 4.6 38 236-274 9-46 (115)
391 PF14663 RasGEF_N_2: Rapamycin 25.1 97 0.0021 25.7 3.6 39 361-399 9-47 (115)
392 PF14666 RICTOR_M: Rapamycin-i 25.0 6E+02 0.013 24.1 12.8 78 294-372 81-176 (226)
393 PF09324 DUF1981: Domain of un 24.7 1.3E+02 0.0028 23.4 4.0 66 190-260 14-84 (86)
394 KOG4524 Uncharacterized conser 24.5 2E+02 0.0043 33.3 6.7 93 195-287 805-899 (1014)
395 PF06012 DUF908: Domain of Unk 24.4 2.9E+02 0.0063 28.1 7.7 61 70-137 241-304 (329)
396 PHA02790 Kelch-like protein; P 24.3 1.4E+02 0.0029 32.4 5.6 44 587-633 109-152 (480)
397 PF12783 Sec7_N: Guanine nucle 23.8 1.7E+02 0.0037 26.2 5.3 84 315-398 69-155 (168)
398 KOG2549 Transcription initiati 23.6 6.5E+02 0.014 27.3 9.8 144 66-221 222-369 (576)
399 PF12054 DUF3535: Domain of un 23.4 9.2E+02 0.02 25.7 16.6 206 292-507 102-345 (441)
400 cd03565 VHS_Tom1 VHS domain fa 22.8 5E+02 0.011 22.4 7.9 71 236-306 39-115 (141)
401 PF14666 RICTOR_M: Rapamycin-i 22.8 6.7E+02 0.014 23.8 13.4 161 90-263 49-224 (226)
402 KOG4231 Intracellular membrane 21.8 63 0.0014 33.9 2.2 70 279-348 330-399 (763)
403 cd03572 ENTH_epsin_related ENT 21.6 4.9E+02 0.011 21.9 8.0 70 278-347 39-118 (122)
404 KOG2011 Sister chromatid cohes 21.2 1.5E+03 0.032 27.2 16.6 137 329-503 297-434 (1048)
405 KOG2199 Signal transducing ada 21.0 3.1E+02 0.0067 28.1 6.6 71 236-306 46-118 (462)
406 PF09324 DUF1981: Domain of un 20.8 2.2E+02 0.0047 22.1 4.6 66 316-385 14-84 (86)
407 PF08713 DNA_alkylation: DNA a 20.7 3.1E+02 0.0068 25.4 6.7 140 95-276 54-196 (213)
408 PF04499 SAPS: SIT4 phosphatas 20.5 6.7E+02 0.015 27.0 9.6 39 184-222 53-92 (475)
No 1
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-38 Score=319.79 Aligned_cols=399 Identities=22% Similarity=0.313 Sum_probs=339.1
Q ss_pred hhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CCh
Q 005282 55 NSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKP 133 (704)
Q Consensus 55 ~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~ 133 (704)
..+.+++.+.+.....+++.+.....+|.... ++.+|+||.+++.|...+. +.++..|+|+|.|++ +++
T Consensus 73 ~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~-vi~~G~v~~lV~~l~~~~~---------~~lq~eAAWaLTnIAsgts 142 (514)
T KOG0166|consen 73 AALYSDDPQQQLTATQAFRKLLSKERNPPIDE-VIQSGVVPRLVEFLSRDDN---------PTLQFEAAWALTNIASGTS 142 (514)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHccCCCCCHHH-HHHcCcHHHHHHHHccCCC---------hhHHHHHHHHHHHHhcCch
Confidence 33445666666666777777776666776644 4566999999999987653 589999999999999 888
Q ss_pred hhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCH-HHHHH
Q 005282 134 EHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDV-KVQRA 212 (704)
Q Consensus 134 ~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~~~~~ 212 (704)
+....++++|++|.+++++.+++. .++++|+|+|+|++.+++.+|..+...|++++|+.++...++ .+.+.
T Consensus 143 e~T~~vv~agavp~fi~Ll~s~~~--------~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn 214 (514)
T KOG0166|consen 143 EQTKVVVDAGAVPIFIQLLSSPSA--------DVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRN 214 (514)
T ss_pred hhccccccCCchHHHHHHhcCCcH--------HHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHH
Confidence 999999999999999999999987 999999999999999999999999999999999999997776 78899
Q ss_pred HHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChh
Q 005282 213 AAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSE 292 (704)
Q Consensus 213 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~ 292 (704)
+.|+|.|+|.+.......-.-..++|.|..++.+.|++|...|+|+|.+|+.+.++..+.+++.|+++.|+.+|.+.+..
T Consensus 215 ~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~ 294 (514)
T KOG0166|consen 215 ATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPK 294 (514)
T ss_pred HHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcc
Confidence 99999999986643333333345799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCchh-hhHHhhCChHHHHHhhc
Q 005282 293 SKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQ-SPDSQLKEMSAFALGRLAQDTHNQ-AGIAQDGGILPLLKLLD 370 (704)
Q Consensus 293 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~L~~ll~ 370 (704)
++..|+++++|++.+++...+.+++.|+++.|..++. ++...+++.|||+++|++.+...+ ..++..|.++.|+.+++
T Consensus 295 v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~ 374 (514)
T KOG0166|consen 295 VVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQ 374 (514)
T ss_pred cccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHh
Confidence 9999999999999999999999999999999999998 566679999999999999987755 45778899999999999
Q ss_pred CCChhHHHHHHHHHHHccc--CCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccH
Q 005282 371 SKNGSLQHNAAFALYGLAD--NEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADR 448 (704)
Q Consensus 371 ~~~~~v~~~a~~~L~~l~~--~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~ 448 (704)
+++..+|++|+|++.|++. +++...++++.|.++++ ..+|...+.
T Consensus 375 ~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~pl---------------------------------cdlL~~~D~ 421 (514)
T KOG0166|consen 375 TAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPL---------------------------------CDLLTCPDV 421 (514)
T ss_pred ccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhh---------------------------------hhcccCCCh
Confidence 9999999999999999995 67778889988876664 455666677
Q ss_pred HHHHHHHHHHHhcc-----CC----CccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhh
Q 005282 449 AVKRRVTLALAHLC-----AP----DDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLAT 504 (704)
Q Consensus 449 ~v~~~a~~~L~~l~-----~~----~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~ 504 (704)
.+...+..+|.++- .. +.....+.+.||+..+-.|-.+++.++-..|...+..--.
T Consensus 422 ~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~ 486 (514)
T KOG0166|consen 422 KIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFS 486 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 77777777777771 11 3334556678999999999999999998888777665433
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=1.8e-37 Score=356.31 Aligned_cols=446 Identities=20% Similarity=0.220 Sum_probs=361.7
Q ss_pred HHHhhhccCCchhhHHHHHHHHHHHHHhhcC-hhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhh
Q 005282 51 IDILNSKFSSDETDRAAAKTASHALVEFAKN-EEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLL 129 (704)
Q Consensus 51 ~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l 129 (704)
++.++.++++ .++..+.+|+++|.+++.+ ++.+..+++.|+||.|+++|.+.+. +.+|++|+|+|.+|
T Consensus 191 Vp~LV~LLsS--~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~---------~~VRE~AA~AL~nL 259 (2102)
T PLN03200 191 VDILVKLLSS--GNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNE---------VSVRAEAAGALEAL 259 (2102)
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCC---------hHHHHHHHHHHHHH
Confidence 3444444443 3356788999999888764 7788999999999999999987542 48999999999999
Q ss_pred c-CChhhHHHHHHcCCcHHHHHHHhhccCCCC-CcchhHHHHHHHHHHHHhhhcChh-----------h-----------
Q 005282 130 A-VKPEHQQIIVDTGALPHLVSLLKQYKNGGN-SRALSGVIRRAADAITNLAHENAN-----------I----------- 185 (704)
Q Consensus 130 ~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~-~~~~~~~~~~a~~~L~~l~~~~~~-----------~----------- 185 (704)
+ +++++++.+++.|+++.|++++..+..... ......++++++|+|+|+|.+.+. .
T Consensus 260 As~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~g 339 (2102)
T PLN03200 260 SSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLG 339 (2102)
T ss_pred hcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHh
Confidence 9 789999999999999999999986542110 000126789999999998864211 0
Q ss_pred ---------------------------------------------------------hhhhhccCCcHHHHHHhcCCCHH
Q 005282 186 ---------------------------------------------------------KTRVRVEDGIPPLVELLKFVDVK 208 (704)
Q Consensus 186 ---------------------------------------------------------~~~~~~~~~i~~L~~ll~~~~~~ 208 (704)
+..+...++++.|+.++...+.+
T Consensus 340 ALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~e 419 (2102)
T PLN03200 340 ALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATAD 419 (2102)
T ss_pred hHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHH
Confidence 00112234455566666667788
Q ss_pred HHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcC
Q 005282 209 VQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSS 288 (704)
Q Consensus 209 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~ 288 (704)
++..++++|++++.++++.++.+.+.|+++.|+++|.+++..+++.++++|++++..++..+..+++.|+++.|+.+|.+
T Consensus 420 vQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s 499 (2102)
T PLN03200 420 VQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLET 499 (2102)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC
Confidence 99999999999998889999999999999999999999999999999999999999888889999999999999999999
Q ss_pred CChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchh---------------
Q 005282 289 SCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQ--------------- 353 (704)
Q Consensus 289 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~--------------- 353 (704)
++..++++|+|+|+|++.+.+..+..+.+.|++++|+.+|+++++++++.|+++|.+++.+.+..
T Consensus 500 ~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~ 579 (2102)
T PLN03200 500 GSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPE 579 (2102)
T ss_pred CCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChh
Confidence 99999999999999999855455555667899999999999999999999999999997432211
Q ss_pred ----------------------hh-HHhhCChHHHHHhhcCCChhHHHHHHHHHHHccc-CCchhhHHHhhCCccccccc
Q 005282 354 ----------------------AG-IAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD-NEDNVADLVRVGGVQKLQDG 409 (704)
Q Consensus 354 ----------------------~~-~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~l~~~ 409 (704)
.. ....|+++.|++++++++..+++.|+++|.+++. +++.+..++..|++++++..
T Consensus 580 ~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~L 659 (2102)
T PLN03200 580 SKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKL 659 (2102)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHH
Confidence 00 1135899999999999999999999999999996 66778899999999999865
Q ss_pred ccccccc-h----HHHHHHHH---H--HHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCccceeeecCCcHHH
Q 005282 410 EFTVQPT-K----DCVARTLK---R--LEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLEL 479 (704)
Q Consensus 410 ~~~~~~~-~----~~~~~~~~---~--~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~ 479 (704)
....... . .++.+... . ....+..+.+++|+.++.+++..+...|+.+|.+++...+.+..+...|+++.
T Consensus 660 Lss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~ 739 (2102)
T PLN03200 660 LTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILP 739 (2102)
T ss_pred HhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHH
Confidence 4443321 1 12222221 1 11224678999999999999999999999999999999888888888999999
Q ss_pred HHHHHhhcchhhhhhHHHHHHHHhhhcC
Q 005282 480 LLGLLESTSVKQREESSVALYKLATKAT 507 (704)
Q Consensus 480 L~~ll~~~~~~~~~~a~~~L~~L~~~~~ 507 (704)
|+++++++++..|+.|+++|.+|++..+
T Consensus 740 Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 740 LTRVLREGTLEGKRNAARALAQLLKHFP 767 (2102)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999987654
No 3
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.8e-37 Score=285.97 Aligned_cols=406 Identities=21% Similarity=0.300 Sum_probs=323.8
Q ss_pred HHhhhccCCchhhHHHHHHHHHHHHHhh---cChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHh
Q 005282 52 DILNSKFSSDETDRAAAKTASHALVEFA---KNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGL 128 (704)
Q Consensus 52 ~~l~~~~~~~~~~~~~~~~a~~~L~~l~---~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~ 128 (704)
++...+.+++.+.+ ..|...+..+- .+|.. +.++++|++|.+++++..... .-.+.+|+|+|.|
T Consensus 75 ~lt~~l~SdDie~q---~qav~kFR~~LS~E~~PPI-q~VIdaGvVpRfvefm~~~q~---------~mlqfEAaWalTN 141 (526)
T COG5064 75 QLTQQLFSDDIEQQ---LQAVYKFRKLLSKETSPPI-QPVIDAGVVPRFVEFMDEIQR---------DMLQFEAAWALTN 141 (526)
T ss_pred HHHHHHhhhHHHHH---HHHHHHHHHHhccccCCCc-hhHHhccccHHHHHHHHhcch---------hHHHHHHHHHHhh
Confidence 33344455555444 45555555443 34665 667799999999999965443 2678899999999
Q ss_pred hc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCH
Q 005282 129 LA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDV 207 (704)
Q Consensus 129 l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~ 207 (704)
++ +.......++++|++|.++++|.+... +++++++|+|+|++.+++.+|..+...|++.+++.++.+..+
T Consensus 142 iaSGtt~QTkvVvd~~AVPlfiqlL~s~~~--------~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~ 213 (526)
T COG5064 142 IASGTTQQTKVVVDAGAVPLFIQLLSSTED--------DVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAI 213 (526)
T ss_pred hccCcccceEEEEeCCchHHHHHHHcCchH--------HHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccc
Confidence 99 666677788999999999999999887 999999999999999999999999999999999999997654
Q ss_pred --HHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHH
Q 005282 208 --KVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGL 285 (704)
Q Consensus 208 --~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 285 (704)
.+.+.+.|+|.|||.+....-.--.-...+|.|.+++.+.|+++...|+|++..++....+..+++++.|..+.|+++
T Consensus 214 ~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvEl 293 (526)
T COG5064 214 HISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVEL 293 (526)
T ss_pred hHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHH
Confidence 888999999999998643322221222358999999999999999999999999999988899999999999999999
Q ss_pred hcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhh-hHHhhCChHH
Q 005282 286 LSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQA-GIAQDGGILP 364 (704)
Q Consensus 286 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~~~~~ 364 (704)
|.+++..++..+++.++|+..+++.+...+++.|+++.+..+|.++...+++.|||+++|++.+...+. .+++.+.+|+
T Consensus 294 Ls~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPp 373 (526)
T COG5064 294 LSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPP 373 (526)
T ss_pred hcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchH
Confidence 999999999999999999999888888889999999999999999999999999999999998876654 4778899999
Q ss_pred HHHhhcCCChhHHHHHHHHHHHcccC----CchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHH
Q 005282 365 LLKLLDSKNGSLQHNAAFALYGLADN----EDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLL 440 (704)
Q Consensus 365 L~~ll~~~~~~v~~~a~~~L~~l~~~----~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 440 (704)
|+++|.+.+..+++.|||++.|.++. |+..+.++..|.+.+| .
T Consensus 374 Li~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpL---------------------------------c 420 (526)
T COG5064 374 LIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPL---------------------------------C 420 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHH---------------------------------H
Confidence 99999999999999999999999863 4555667776766654 3
Q ss_pred HHHhhccHHHHHHHHHHHHhcc------------CCCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhcCC
Q 005282 441 YLLRVADRAVKRRVTLALAHLC------------APDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKATS 508 (704)
Q Consensus 441 ~ll~~~~~~v~~~a~~~L~~l~------------~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~ 508 (704)
.+|...+..+-+.++.++.|+- ..+.....+.+.||+..+-.+-.+.+..+-..|-..+...-....+
T Consensus 421 ~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFgeeD~ 500 (526)
T COG5064 421 DLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGEEDA 500 (526)
T ss_pred HHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHcccchh
Confidence 3443333333333333333331 1112223334579999999999999999988898888777655544
Q ss_pred CCC
Q 005282 509 LSP 511 (704)
Q Consensus 509 ~~~ 511 (704)
.+.
T Consensus 501 vd~ 503 (526)
T COG5064 501 VDE 503 (526)
T ss_pred hhh
Confidence 444
No 4
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-35 Score=297.96 Aligned_cols=362 Identities=24% Similarity=0.340 Sum_probs=311.4
Q ss_pred HHHHHhhhccCCchhhHHHHHHHHHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHH
Q 005282 49 AQIDILNSKFSSDETDRAAAKTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALG 127 (704)
Q Consensus 49 ~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~ 127 (704)
-.++.++..++.+ .++..+.+|+|+|.+++. +++..+.++++|++|.++.++.+++. +++++|.|+|+
T Consensus 109 G~v~~lV~~l~~~-~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~----------~v~eQavWALg 177 (514)
T KOG0166|consen 109 GVVPRLVEFLSRD-DNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSA----------DVREQAVWALG 177 (514)
T ss_pred CcHHHHHHHHccC-CChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcH----------HHHHHHHHHHh
Confidence 4555666666533 334579999999999999 58999999999999999999999986 99999999999
Q ss_pred hhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCC
Q 005282 128 LLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD 206 (704)
Q Consensus 128 ~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~ 206 (704)
|++ +++.+|+.+++.|++++|+.++..+.. ..+.+.+.|+|.|+|.+..+....-....++|.|..++.+.|
T Consensus 178 NIagds~~~Rd~vl~~g~l~pLl~~l~~~~~-------~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D 250 (514)
T KOG0166|consen 178 NIAGDSPDCRDYVLSCGALDPLLRLLNKSDK-------LSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTD 250 (514)
T ss_pred ccccCChHHHHHHHhhcchHHHHHHhccccc-------hHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCC
Confidence 999 899999999999999999999998765 268999999999999766444444555678999999999999
Q ss_pred HHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHh
Q 005282 207 VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLL 286 (704)
Q Consensus 207 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll 286 (704)
++++..|+|++++|+.+.++..+.+++.|+++.|+.+|.++++.++..|+++++|++.+++...+.+++.|+++.|..++
T Consensus 251 ~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll 330 (514)
T KOG0166|consen 251 EEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLL 330 (514)
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHh
Confidence 99999999999999998999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-CCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCc-hh-hhHHhhCChH
Q 005282 287 S-SSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTH-NQ-AGIAQDGGIL 363 (704)
Q Consensus 287 ~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~-~~~~~~~~~~ 363 (704)
. ++...++.+|+|+++|++.++.+..+.+++.|++|.|++++++.+.++|+.|+|+++|++.+.. .+ ..+++.|.++
T Consensus 331 ~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~ 410 (514)
T KOG0166|consen 331 SSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIK 410 (514)
T ss_pred ccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCch
Confidence 8 5555689999999999999999999999999999999999999999999999999999996644 33 4578899999
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHcccC---------CchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcc
Q 005282 364 PLLKLLDSKNGSLQHNAAFALYGLADN---------EDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGR 434 (704)
Q Consensus 364 ~L~~ll~~~~~~v~~~a~~~L~~l~~~---------~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (704)
+++.+|.-.+..+...++.+|.++-.. ......+-+.||++.
T Consensus 411 plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldk----------------------------- 461 (514)
T KOG0166|consen 411 PLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDK----------------------------- 461 (514)
T ss_pred hhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhH-----------------------------
Confidence 999999888999988999999888531 122334445566554
Q ss_pred hhHHHHHHHhhccHHHHHHHHHHHHhc
Q 005282 435 VLNHLLYLLRVADRAVKRRVTLALAHL 461 (704)
Q Consensus 435 ~~~~L~~ll~~~~~~v~~~a~~~L~~l 461 (704)
+-.+-.+++.++-..|...+...
T Consensus 462 ----iE~LQ~hen~~Iy~~A~~II~~y 484 (514)
T KOG0166|consen 462 ----IENLQSHENEEIYKKAYKIIDTY 484 (514)
T ss_pred ----HHHhhccccHHHHHHHHHHHHHh
Confidence 23333456677777777777766
No 5
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=2.8e-34 Score=330.16 Aligned_cols=404 Identities=23% Similarity=0.245 Sum_probs=348.6
Q ss_pred HHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-
Q 005282 52 DILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA- 130 (704)
Q Consensus 52 ~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~- 130 (704)
+.|..++...+.. ..+..+..+|..+..++..++.+.+.|+++.|+.+|...+. +++..++++|.+++
T Consensus 365 ~~LV~Llr~k~p~-~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~----------evQ~~Av~aL~~L~~ 433 (2102)
T PLN03200 365 QILVKLLKPRDTK-LVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATA----------DVQEELIRALSSLCC 433 (2102)
T ss_pred HHHHHHhCCCCCc-hhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCH----------HHHHHHHHHHHHHhC
Confidence 3455555433322 23566788888888889998999999999999999999976 99999999999999
Q ss_pred CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHH
Q 005282 131 VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQ 210 (704)
Q Consensus 131 ~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~ 210 (704)
++.+.++.+.+.|++|.|+++|.+.+. .+++.+++++++++.++++.+..+.+.|++|.|+++|.+++..++
T Consensus 434 ~~~e~~~aIi~~ggIp~LV~LL~s~s~--------~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iq 505 (2102)
T PLN03200 434 GKGGLWEALGGREGVQLLISLLGLSSE--------QQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAK 505 (2102)
T ss_pred CCHHHHHHHHHcCcHHHHHHHHcCCCH--------HHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHH
Confidence 778999999999999999999998765 899999999999998888889999999999999999999999999
Q ss_pred HHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhh---------------------
Q 005282 211 RAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSI--------------------- 269 (704)
Q Consensus 211 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~--------------------- 269 (704)
+.|+|+|.|++.+.+..+..+.+.|+++.|+++|+++++.++..|+++|.+++...+..
T Consensus 506 eeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL 585 (2102)
T PLN03200 506 EDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVL 585 (2102)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHH
Confidence 99999999999855556666668899999999999999999999999999996432110
Q ss_pred ----------------HHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCH
Q 005282 270 ----------------KKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDS 333 (704)
Q Consensus 270 ----------------~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~ 333 (704)
.......|+++.|+.++.+++..+++.|+++|.+++.+.++....++..|++++++.++++++.
T Consensus 586 ~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~ 665 (2102)
T PLN03200 586 DVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTE 665 (2102)
T ss_pred HHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCh
Confidence 0111136899999999999999999999999999999888888899999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCC--chhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHHHhhCCccccccccc
Q 005282 334 QLKEMSAFALGRLAQDT--HNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEF 411 (704)
Q Consensus 334 ~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~ 411 (704)
++++.++|+|.+++.+. .++..+++.|++++|++++.+.+..+...++.+|.+++.+++.+..+...|+++
T Consensus 666 ~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~------- 738 (2102)
T PLN03200 666 AVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIIL------- 738 (2102)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHH-------
Confidence 99999999999999643 334567889999999999999999999999999999999999998888877754
Q ss_pred ccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCccc----eeeecCCcHHHHHHHHhhc
Q 005282 412 TVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCK----TIFIDNNGLELLLGLLEST 487 (704)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~----~~l~~~~~i~~L~~ll~~~ 487 (704)
+|+.+++++++..|++|+++|.+||+..+.- ..+...|.+..|+.+|++.
T Consensus 739 --------------------------~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~ 792 (2102)
T PLN03200 739 --------------------------PLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNST 792 (2102)
T ss_pred --------------------------HHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcC
Confidence 5778999999999999999999998754422 4446679999999999987
Q ss_pred chhhhhh--HHHHHHHHhhhcC
Q 005282 488 SVKQREE--SSVALYKLATKAT 507 (704)
Q Consensus 488 ~~~~~~~--a~~~L~~L~~~~~ 507 (704)
+.+.... |..+|..|++...
T Consensus 793 ~~~~~~~~~al~~l~~l~~~~~ 814 (2102)
T PLN03200 793 DLDSSATSEALEALALLARTKG 814 (2102)
T ss_pred CcchhhHHHHHHHHHHHHhhcc
Confidence 7776655 8999999998643
No 6
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=4.4e-35 Score=270.29 Aligned_cols=310 Identities=24% Similarity=0.331 Sum_probs=279.9
Q ss_pred hhHHHHHHHHHHHHHhhcC-hhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHH
Q 005282 63 TDRAAAKTASHALVEFAKN-EEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIV 140 (704)
Q Consensus 63 ~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~ 140 (704)
+....+.+|+|+|.|++.+ ....+.++++|++|.++++|.++.. +|++++.|+|+|++ +++.+|+.+.
T Consensus 127 q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~----------~V~eQavWALGNiAGDS~~~RD~vL 196 (526)
T COG5064 127 QRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTED----------DVREQAVWALGNIAGDSEGCRDYVL 196 (526)
T ss_pred chhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchH----------HHHHHHHHHhccccCCchhHHHHHH
Confidence 4445789999999999985 6777888899999999999999976 99999999999999 8889999999
Q ss_pred HcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHh
Q 005282 141 DTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTL 220 (704)
Q Consensus 141 ~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l 220 (704)
+.|++.+++.++.++.. ...+.+.+.|.|+|+|.+..+...+-.-...+|.|.+++.+.|+++..-|+|++..|
T Consensus 197 ~~galeplL~ll~ss~~------~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYl 270 (526)
T COG5064 197 QCGALEPLLGLLLSSAI------HISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYL 270 (526)
T ss_pred hcCchHHHHHHHHhccc------hHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Confidence 99999999999986554 238899999999999976555555566667899999999999999999999999999
Q ss_pred ccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHH
Q 005282 221 AFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALL 300 (704)
Q Consensus 221 ~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~ 300 (704)
+.+..+..+.+.+.|+.+.|+.+|.+++..++..+++.++|+..+++...+.+++.|+++.+..+|+++...++.++||+
T Consensus 271 sDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWT 350 (526)
T COG5064 271 SDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWT 350 (526)
T ss_pred ccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhhee
Confidence 99888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchh----hhHHhhCChHHHHHhhcCCChhH
Q 005282 301 LGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQ----AGIAQDGGILPLLKLLDSKNGSL 376 (704)
Q Consensus 301 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~----~~~~~~~~~~~L~~ll~~~~~~v 376 (704)
++|++.++.+..+.+++.+++|+|+++|.+.+..+++.|||++.|...+.-++ ..++..|.+.+|+.+|.-.+..+
T Consensus 351 iSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNki 430 (526)
T COG5064 351 ISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKI 430 (526)
T ss_pred ecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccc
Confidence 99999999999999999999999999999999999999999999999775443 45788899999999998777767
Q ss_pred HHHHHHHHHHcc
Q 005282 377 QHNAAFALYGLA 388 (704)
Q Consensus 377 ~~~a~~~L~~l~ 388 (704)
.+.++.++.|+-
T Consensus 431 iev~LD~~eniL 442 (526)
T COG5064 431 IEVALDAIENIL 442 (526)
T ss_pred hhhhHHHHHHHH
Confidence 777777777765
No 7
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.3e-33 Score=259.44 Aligned_cols=389 Identities=24% Similarity=0.299 Sum_probs=342.6
Q ss_pred hhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHc
Q 005282 63 TDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDT 142 (704)
Q Consensus 63 ~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~ 142 (704)
.+..++..+...+.+++.+-+++..++..+++..|+.-+..+.. +++..+..++.||+...+++..+...
T Consensus 97 ~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~v----------evqcnaVgCitnLaT~d~nk~kiA~s 166 (550)
T KOG4224|consen 97 CDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGV----------EVQCNAVGCITNLATFDSNKVKIARS 166 (550)
T ss_pred cchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCc----------EEEeeehhhhhhhhccccchhhhhhc
Confidence 44567888999999999988888888888888888766666665 79999999999999778999999999
Q ss_pred CCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhcc
Q 005282 143 GALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAF 222 (704)
Q Consensus 143 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 222 (704)
|++.++.++-+..+. .+++++..+|.++.. ..+.|..++..|++|.|+.++.++++.++..++.++.+++.
T Consensus 167 GaL~pltrLakskdi--------rvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaV 237 (550)
T KOG4224|consen 167 GALEPLTRLAKSKDI--------RVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAV 237 (550)
T ss_pred cchhhhHhhcccchh--------hHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhh
Confidence 999999996555544 899999999999995 77889999999999999999999999999999999999997
Q ss_pred CCchhhHHhHhcC--ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHH
Q 005282 223 KNDENKKLIVECN--ALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALL 300 (704)
Q Consensus 223 ~~~~~~~~~~~~~--~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~ 300 (704)
+...|+.+.+.+ .++.|++++.++++.++..|..+|++++.. .+....++++|.+|.++++++++........+.+
T Consensus 238 -d~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasd-t~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaC 315 (550)
T KOG4224|consen 238 -DRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASD-TEYQREIVEAGSLPLLVELLQSPMGPLILASVAC 315 (550)
T ss_pred -hHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhccc-chhhhHHHhcCCchHHHHHHhCcchhHHHHHHHH
Confidence 778888888877 999999999999999999999999999976 5667779999999999999999888888889999
Q ss_pred HHHHhccCCcchHHHHhcCChHHHHHhhCCCC-HHHHHHHHHHHHHhhc-CCchhhhHHhhCChHHHHHhhcCCChhHHH
Q 005282 301 LGQFAAADSNSKVHIVQRGAVRPLIEMLQSPD-SQLKEMSAFALGRLAQ-DTHNQAGIAQDGGILPLLKLLDSKNGSLQH 378 (704)
Q Consensus 301 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~ 378 (704)
+.|++. .+-+...+.+.|++.+|+.+|+.++ .+++.+|..+|+||+. ...++..+.+.|+++.+..++.++..++|.
T Consensus 316 Irnisi-hplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqs 394 (550)
T KOG4224|consen 316 IRNISI-HPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQS 394 (550)
T ss_pred Hhhccc-ccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHH
Confidence 999986 6777778899999999999999765 4599999999999997 567788899999999999999999999999
Q ss_pred HHHHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHH
Q 005282 379 NAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLAL 458 (704)
Q Consensus 379 ~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L 458 (704)
..-.++..|+.+++.+..+.+.|.++.| +.+..+.+.+++-+++.+|
T Consensus 395 eisac~a~Lal~d~~k~~lld~gi~~iL---------------------------------Ip~t~s~s~Ev~gNaAaAL 441 (550)
T KOG4224|consen 395 EISACIAQLALNDNDKEALLDSGIIPIL---------------------------------IPWTGSESEEVRGNAAAAL 441 (550)
T ss_pred HHHHHHHHHHhccccHHHHhhcCCccee---------------------------------ecccCccchhhcccHHHHH
Confidence 9999999999999999999999988774 4567788899999999999
Q ss_pred HhccCCCccceeeecC-----CcHH-HHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282 459 AHLCAPDDCKTIFIDN-----NGLE-LLLGLLESTSVKQREESSVALYKLATKA 506 (704)
Q Consensus 459 ~~l~~~~~~~~~l~~~-----~~i~-~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 506 (704)
.||+++.+....+.+. +|++ .|.+++.+....++..|.|.+.+|..+.
T Consensus 442 ~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h 495 (550)
T KOG4224|consen 442 INLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDH 495 (550)
T ss_pred HhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhC
Confidence 9998866554433333 5555 6888998988899999999999999866
No 8
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-33 Score=263.08 Aligned_cols=375 Identities=27% Similarity=0.358 Sum_probs=336.6
Q ss_pred CCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHH
Q 005282 91 NGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRR 170 (704)
Q Consensus 91 ~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~ 170 (704)
.....+++-++++.+. .++..+..+++|++.+-+++..+.+.+++..|+.-+-.+.. +++..
T Consensus 84 res~epvl~llqs~d~----------~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~v--------evqcn 145 (550)
T KOG4224|consen 84 RESNEPVLALLQSCDK----------CIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGV--------EVQCN 145 (550)
T ss_pred hhhhhHHHHHHhCcch----------hhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCc--------EEEee
Confidence 3457788888888865 99999999999999888888888889999988877776665 88999
Q ss_pred HHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHH
Q 005282 171 AADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDAS 250 (704)
Q Consensus 171 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~ 250 (704)
++.+++|++.. ..++..+...|++.++.++-++.+..+++++..+|.++.. ..++|+.++..|++|.|+.++.++++.
T Consensus 146 aVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~d 223 (550)
T KOG4224|consen 146 AVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLD 223 (550)
T ss_pred ehhhhhhhhcc-ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCChh
Confidence 99999999974 6678889999999999999999999999999999999995 899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHcC--CHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhh
Q 005282 251 VHFEAVGVIGNLVHSSPSIKKEVILAG--ALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEML 328 (704)
Q Consensus 251 v~~~a~~~L~~l~~~~~~~~~~~~~~~--~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll 328 (704)
++..++.++++++-. ...++.+.+.+ +++.|+.++.++++.++..|..+|+|+++ +.+.+..+.+.|.+|.+++++
T Consensus 224 vqyycttaisnIaVd-~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlas-dt~Yq~eiv~ag~lP~lv~Ll 301 (550)
T KOG4224|consen 224 VQYYCTTAISNIAVD-RRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLAS-DTEYQREIVEAGSLPLLVELL 301 (550)
T ss_pred HHHHHHHHhhhhhhh-HHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcc-cchhhhHHHhcCCchHHHHHH
Confidence 999999999999855 67778888877 99999999999999999999999999986 778888899999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCC-hhHHHHHHHHHHHccc-CCchhhHHHhhCCcccc
Q 005282 329 QSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKN-GSLQHNAAFALYGLAD-NEDNVADLVRVGGVQKL 406 (704)
Q Consensus 329 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~-~~v~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~l 406 (704)
+++.-........++.|++.++-+...+++.|++.+|+++|..++ ++++..|..+|++|+. ...++..|.++|+++.
T Consensus 302 qs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~k- 380 (550)
T KOG4224|consen 302 QSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPK- 380 (550)
T ss_pred hCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHH-
Confidence 998777777778999999999999999999999999999998765 5599999999999997 7778899998888665
Q ss_pred cccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCccceeeecCCcHHHHHHHHhh
Q 005282 407 QDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLES 486 (704)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~~ 486 (704)
+..++.++...+|.....++..|+.++..+..+.+.|.++.|+.++.+
T Consensus 381 --------------------------------l~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s 428 (550)
T KOG4224|consen 381 --------------------------------LIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGS 428 (550)
T ss_pred --------------------------------HHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCc
Confidence 566788889999999999999999999999999999999999999999
Q ss_pred cchhhhhhHHHHHHHHhhhcCCCCCCCCCCCCCc
Q 005282 487 TSVKQREESSVALYKLATKATSLSPMDAAPPSPT 520 (704)
Q Consensus 487 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~ 520 (704)
.+.+++-.|+.+|.|++++...|..+.-.|.+|.
T Consensus 429 ~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~ 462 (550)
T KOG4224|consen 429 ESEEVRGNAAAALINLSSDVEHYARVIEAWDHPV 462 (550)
T ss_pred cchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcc
Confidence 9999999999999999999887766655454444
No 9
>PHA02713 hypothetical protein; Provisional
Probab=99.93 E-value=8.3e-26 Score=243.36 Aligned_cols=161 Identities=18% Similarity=0.292 Sum_probs=150.3
Q ss_pred hHHhhhcCCCcccEEEEEc-CeEeehhHHHHhhcCHHHHHhhcCCCCCCC-CCceEcCCCCHHHHHHHHHHHhcCccccC
Q 005282 525 LGEQFVNNPTLSDVTFVVE-GKQFYAHRICLLASSDAFRAMFDGGYKEKN-AKDVEIPNIRWNVFELMMRFIYTGNVDVS 602 (704)
Q Consensus 525 l~~~~~~~~~~~d~~~~~~-~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~-~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~ 602 (704)
..+.++.++.+|||++.++ |++|+|||.||+++|+||++||.++++|.. +.+|.|.++++++|+.+|+|+|||+ ++
T Consensus 15 ~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~~--i~ 92 (557)
T PHA02713 15 NISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYNRH--IS 92 (557)
T ss_pred HHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcCCC--CC
Confidence 3478999999999999997 899999999999999999999999999864 7899999999999999999999997 68
Q ss_pred hhhHHHHHHHHhhhChHhHHHHHHHHHHhhCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCChhhhccchhcH
Q 005282 603 VDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNATTLKQSCILFILEKFDKMRNKPWFFRLIRCVL 682 (704)
Q Consensus 603 ~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~L~~~~~ 682 (704)
.+++.+++.+|++|+++.+++.|++||.++++++||+.++.++..+++..|.+.|.+|+.+||.++.++++|.+|+.+.+
T Consensus 93 ~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~~~ef~~L~~~~l 172 (557)
T PHA02713 93 SMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLITTDAFKKTVFEIL 172 (557)
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhCChhhhhCCHHHH
Confidence 99999999999999999999999999999999999999999999999989999999999999999999999999987755
Q ss_pred HHHHH
Q 005282 683 PEIRN 687 (704)
Q Consensus 683 ~~l~~ 687 (704)
.+++.
T Consensus 173 ~~lL~ 177 (557)
T PHA02713 173 FDIIS 177 (557)
T ss_pred HHHhc
Confidence 55543
No 10
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.93 E-value=2.9e-25 Score=237.60 Aligned_cols=163 Identities=27% Similarity=0.397 Sum_probs=156.6
Q ss_pred hHHhhhcCCCcccEEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhcCccccChh
Q 005282 525 LGEQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVD 604 (704)
Q Consensus 525 l~~~~~~~~~~~d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~ 604 (704)
..+.++..+.+|||++.+++++|+|||.||++.||||++||.++++|+.+.+|.+.+++++.+..+++|+|||.+.++.+
T Consensus 26 ~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~i~i~~~ 105 (571)
T KOG4441|consen 26 GLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLELLLDYAYTGKLEISED 105 (571)
T ss_pred HHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHHHHHHHhhcceEEechH
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhChHhHHHHHHHHHHhhCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCChhhhccchhcHHH
Q 005282 605 IAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNATTLKQSCILFILEKFDKMRNKPWFFRLIRCVLPE 684 (704)
Q Consensus 605 ~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~L~~~~~~~ 684 (704)
++++++.+|++||++.+.+.|.+||.+.++++||+.+..+|+.|++.+|.+.+..|+.+||.++..+++|..||.+.+.+
T Consensus 106 nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~~~eefl~L~~~~l~~ 185 (571)
T KOG4441|consen 106 NVQELLEAASLLQIPEVVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADEYILQHFAEVSKTEEFLLLSLEELIG 185 (571)
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccHHhhCCCHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998886555
Q ss_pred HHH
Q 005282 685 IRN 687 (704)
Q Consensus 685 l~~ 687 (704)
++.
T Consensus 186 ll~ 188 (571)
T KOG4441|consen 186 LLS 188 (571)
T ss_pred hcc
Confidence 543
No 11
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.92 E-value=1.2e-22 Score=216.79 Aligned_cols=379 Identities=19% Similarity=0.236 Sum_probs=317.2
Q ss_pred HHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcH
Q 005282 67 AAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALP 146 (704)
Q Consensus 67 ~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~ 146 (704)
..+.++..|.|++.++.+...+.+.|+++.|+++|++.+. ++...+..+|.+|+-..+++..+.+.|+++
T Consensus 265 Llrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~----------ellil~v~fLkkLSi~~ENK~~m~~~giV~ 334 (708)
T PF05804_consen 265 LLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENE----------ELLILAVTFLKKLSIFKENKDEMAESGIVE 334 (708)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCH----------HHHHHHHHHHHHHcCCHHHHHHHHHcCCHH
Confidence 3457788999999999999999999999999999998865 899999999999998889999999999999
Q ss_pred HHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCch
Q 005282 147 HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDE 226 (704)
Q Consensus 147 ~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 226 (704)
.|.+++.+.+. +++..++.+|.|++. ++..|..++..|++|.|+.+|.++ ..+..++.+|++++. +++
T Consensus 335 kL~kLl~s~~~--------~l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~-dd~ 402 (708)
T PF05804_consen 335 KLLKLLPSENE--------DLVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSM-DDE 402 (708)
T ss_pred HHHHHhcCCCH--------HHHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhcc-CHh
Confidence 99999998765 899999999999997 777899999999999999999865 466779999999997 788
Q ss_pred hhHHhHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHh
Q 005282 227 NKKLIVECNALPTLVLMLR-SEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFA 305 (704)
Q Consensus 227 ~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~ 305 (704)
.+..+...+++|.+++++. .+++.+...++.++.|++.+ +.+.+.+.+.++++.|+......... .....+.|++
T Consensus 403 ~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~-~rnaqlm~~g~gL~~L~~ra~~~~D~---lLlKlIRNiS 478 (708)
T PF05804_consen 403 ARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN-KRNAQLMCEGNGLQSLMKRALKTRDP---LLLKLIRNIS 478 (708)
T ss_pred hHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC-HHHHHHHHhcCcHHHHHHHHHhcccH---HHHHHHHHHH
Confidence 9999999999999999765 46777888889999999976 66678888889999999776543332 2346889999
Q ss_pred ccCCcchHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCchhhhHHh-hCChHHHHHhhcCC--ChhHHHHHH
Q 005282 306 AADSNSKVHIVQRGAVRPLIEMLQS-PDSQLKEMSAFALGRLAQDTHNQAGIAQ-DGGILPLLKLLDSK--NGSLQHNAA 381 (704)
Q Consensus 306 ~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~~~L~~ll~~~--~~~v~~~a~ 381 (704)
.+++..+..+. +.+..|+..+.+ .+.+....+.++|+|+...+..-..+++ .+.++.+.++|..+ .+++.-.++
T Consensus 479 ~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~V 556 (708)
T PF05804_consen 479 QHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVV 556 (708)
T ss_pred hcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHH
Confidence 87655555443 468888888876 4678889999999999977655556665 58888899999654 557889999
Q ss_pred HHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHh--hccHHHHHHHHHHHH
Q 005282 382 FALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLR--VADRAVKRRVTLALA 459 (704)
Q Consensus 382 ~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~--~~~~~v~~~a~~~L~ 459 (704)
..++.++.++++...+.+.|.++. |+.++. .+|.++..+.+.++.
T Consensus 557 i~~gtla~d~~~A~lL~~sgli~~---------------------------------Li~LL~~kqeDdE~VlQil~~f~ 603 (708)
T PF05804_consen 557 ILLGTLASDPECAPLLAKSGLIPT---------------------------------LIELLNAKQEDDEIVLQILYVFY 603 (708)
T ss_pred HHHHHHHCCHHHHHHHHhCChHHH---------------------------------HHHHHHhhCchHHHHHHHHHHHH
Confidence 999999999999999998877655 445554 457889999999999
Q ss_pred hccCCCccceeeec-CCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282 460 HLCAPDDCKTIFID-NNGLELLLGLLESTSVKQREESSVALYKLATKA 506 (704)
Q Consensus 460 ~l~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 506 (704)
++..++..+..+.+ .+++..|+.++.+.|+.+++.|-.+|--++...
T Consensus 604 ~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d 651 (708)
T PF05804_consen 604 QLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYD 651 (708)
T ss_pred HHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC
Confidence 99777777766655 577788999999999999999999998888755
No 12
>PHA02790 Kelch-like protein; Provisional
Probab=99.92 E-value=3.3e-25 Score=235.54 Aligned_cols=150 Identities=18% Similarity=0.197 Sum_probs=139.5
Q ss_pred hhhcCCCcccEEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEc--CCCCHHHHHHHHHHHhcCccccChhh
Q 005282 528 QFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEI--PNIRWNVFELMMRFIYTGNVDVSVDI 605 (704)
Q Consensus 528 ~~~~~~~~~d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l--~~~~~~~~~~~l~~~Y~~~~~~~~~~ 605 (704)
.++..+.+|||.+.+|+ +|+|||.||++.|||||+||+++++|+.. +|.+ .++++++++.+|+|+|||++.++.++
T Consensus 15 ~~~~~~~~~~~~~~~~~-~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~it~~n 92 (480)
T PHA02790 15 ALSMTKKFKTIIEAIGG-NIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVYIDSHN 92 (480)
T ss_pred HHHhhhhhceEEEEcCc-EEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEEEeccc
Confidence 45677889999876655 89999999999999999999999999854 5655 38999999999999999999999999
Q ss_pred HHHHHHHHhhhChHhHHHHHHHHHHhhCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCC--hhhhccch
Q 005282 606 AQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNATTLKQSCILFILEKFDKMRNK--PWFFRLIR 679 (704)
Q Consensus 606 ~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~--~~f~~L~~ 679 (704)
+++++.+|++|+++.+++.|++||.+.++++||+.++.+|+.|++++|.+.+.+||.+||.++.++ ++|..||.
T Consensus 93 V~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~ef~~L~~ 168 (480)
T PHA02790 93 VVNLLRASILTSVEFIIYTCINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNFDYLSM 168 (480)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchhhhhCCH
Confidence 999999999999999999999999999999999999999999999999999999999999999986 89988874
No 13
>PHA03098 kelch-like protein; Provisional
Probab=99.92 E-value=1.3e-24 Score=237.19 Aligned_cols=151 Identities=25% Similarity=0.464 Sum_probs=144.9
Q ss_pred CCCcccEEEEE--cCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhcCccccChhhHHHH
Q 005282 532 NPTLSDVTFVV--EGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVDIAQDL 609 (704)
Q Consensus 532 ~~~~~d~~~~~--~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~l 609 (704)
++.+|||.+.+ +|++|+|||.||+++|+||++||.++++ +.+|.+++ ++++|+.+|+|+|||++.++.+++.++
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~~~~~~l 81 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLNI-DYDSFNEVIKYIYTGKINITSNNVKDI 81 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEecC-CHHHHHHHHHHhcCCceEEcHHHHHHH
Confidence 88999999998 9999999999999999999999999988 46899999 999999999999999999999999999
Q ss_pred HHHHhhhChHhHHHHHHHHHHhhCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCChhhhccchhcHHHHH
Q 005282 610 LRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNATTLKQSCILFILEKFDKMRNKPWFFRLIRCVLPEIR 686 (704)
Q Consensus 610 l~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~L~~~~~~~l~ 686 (704)
+.+|++|+++.|++.|+++|.+.++.+||+.++.+|..|++..|.+.|.+||.+||.++.++++|.+|+.+.+.+|+
T Consensus 82 l~~A~~l~~~~l~~~C~~~l~~~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l~~~~l~~ll 158 (534)
T PHA03098 82 LSIANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYLSKNELIKIL 158 (534)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcCCHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988666654
No 14
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.91 E-value=1.4e-24 Score=204.79 Aligned_cols=161 Identities=31% Similarity=0.538 Sum_probs=154.1
Q ss_pred HhhhcCCCcccEEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhcCcccc---Ch
Q 005282 527 EQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDV---SV 603 (704)
Q Consensus 527 ~~~~~~~~~~d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~---~~ 603 (704)
..++....++||.|++++++|+|||.||++||+|||+|+.|+|.|+.+..|++.+...++|+.+|+|+|+|++.+ ..
T Consensus 36 ~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~~~l~~~~e 115 (620)
T KOG4350|consen 36 DELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGKIDLAGVEE 115 (620)
T ss_pred HHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhcceecccchH
Confidence 567788999999999999999999999999999999999999999999999999999999999999999999985 56
Q ss_pred hhHHHHHHHHhhhChHhHHHHHHHHHHhhCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCChhhhccchhcHH
Q 005282 604 DIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNATTLKQSCILFILEKFDKMRNKPWFFRLIRCVLP 683 (704)
Q Consensus 604 ~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~L~~~~~~ 683 (704)
+...+.|.+|++|+..+|.....+++++.+..+|+|.++..|..|+.++|.+.|..|+.+|.+++..++.|..|+++.+.
T Consensus 116 d~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA~~lL~~~sFn~LSk~sL~ 195 (620)
T KOG4350|consen 116 DILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCMMFMDRNADQLLEDPSFNRLSKDSLK 195 (620)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHHHHHhcCHHhhhcCcchhhhhHHHHH
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHH
Q 005282 684 EIRN 687 (704)
Q Consensus 684 ~l~~ 687 (704)
+++.
T Consensus 196 e~l~ 199 (620)
T KOG4350|consen 196 ELLA 199 (620)
T ss_pred HHHh
Confidence 8764
No 15
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.89 E-value=4.6e-20 Score=197.26 Aligned_cols=357 Identities=20% Similarity=0.246 Sum_probs=295.6
Q ss_pred HHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHH
Q 005282 47 IRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFAL 126 (704)
Q Consensus 47 ~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L 126 (704)
...++..|+.++.+++ .....-++..|.+++-..+++..+.+.|+++.|.+++.+++. +++..++++|
T Consensus 288 ~~~iV~~Lv~~Ldr~n--~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~----------~l~~~aLrlL 355 (708)
T PF05804_consen 288 NKGIVSLLVKCLDREN--EELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENE----------DLVNVALRLL 355 (708)
T ss_pred hcCCHHHHHHHHcCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCH----------HHHHHHHHHH
Confidence 4556777777776543 446778899999999999999999999999999999999875 8999999999
Q ss_pred HhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc-CC
Q 005282 127 GLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLK-FV 205 (704)
Q Consensus 127 ~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~ 205 (704)
.||+.+++.|..+++.|++|.|+.+|.++ ..+..++.+|++++. +++.+..+...+++|.+++++- .+
T Consensus 356 ~NLSfd~~~R~~mV~~GlIPkLv~LL~d~----------~~~~val~iLy~LS~-dd~~r~~f~~TdcIp~L~~~Ll~~~ 424 (708)
T PF05804_consen 356 FNLSFDPELRSQMVSLGLIPKLVELLKDP----------NFREVALKILYNLSM-DDEARSMFAYTDCIPQLMQMLLENS 424 (708)
T ss_pred HHhCcCHHHHHHHHHCCCcHHHHHHhCCC----------chHHHHHHHHHHhcc-CHhhHHHHhhcchHHHHHHHHHhCC
Confidence 99999999999999999999999999864 456779999999997 6678999999999999999766 46
Q ss_pred CHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHH
Q 005282 206 DVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGL 285 (704)
Q Consensus 206 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 285 (704)
++.+...++..+.|++. ++.+.+.+.+.|+++.|++........ ..+..+.|++.+++..+..+. +++..|+.+
T Consensus 425 ~~~v~~eliaL~iNLa~-~~rnaqlm~~g~gL~~L~~ra~~~~D~---lLlKlIRNiS~h~~~~k~~f~--~~i~~L~~~ 498 (708)
T PF05804_consen 425 EEEVQLELIALLINLAL-NKRNAQLMCEGNGLQSLMKRALKTRDP---LLLKLIRNISQHDGPLKELFV--DFIGDLAKI 498 (708)
T ss_pred CccccHHHHHHHHHHhc-CHHHHHHHHhcCcHHHHHHHHHhcccH---HHHHHHHHHHhcCchHHHHHH--HHHHHHHHH
Confidence 67788888999999996 888999999999999999876543322 245699999988655444443 477788887
Q ss_pred hcCC-ChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhcCCchhhhHHhhCCh
Q 005282 286 LSSS-CSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSP--DSQLKEMSAFALGRLAQDTHNQAGIAQDGGI 362 (704)
Q Consensus 286 l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 362 (704)
+..+ +.+...+++.+|+|+...+.+....+.+.+++|.|.+.|..+ ++++.-.++..++.++..+.....+...|.+
T Consensus 499 v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli 578 (708)
T PF05804_consen 499 VSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLI 578 (708)
T ss_pred hhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChH
Confidence 7654 567789999999999875555555555679999999999753 4578888899999999988888889999999
Q ss_pred HHHHHhhcC--CChhHHHHHHHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHH
Q 005282 363 LPLLKLLDS--KNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLL 440 (704)
Q Consensus 363 ~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 440 (704)
+.|+.++.+ .|.+.....+.++..+..+++.+..+++... +...++
T Consensus 579 ~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~--------------------------------~~~yli 626 (708)
T PF05804_consen 579 PTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETE--------------------------------IPAYLI 626 (708)
T ss_pred HHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccc--------------------------------hHHHHH
Confidence 999999965 4678889999999999999999988887433 345789
Q ss_pred HHHhhccHHHHHHHHHHHHhccCC
Q 005282 441 YLLRVADRAVKRRVTLALAHLCAP 464 (704)
Q Consensus 441 ~ll~~~~~~v~~~a~~~L~~l~~~ 464 (704)
.++++.|+.++..|-.+|--++..
T Consensus 627 dL~~d~N~~ir~~~d~~Ldii~e~ 650 (708)
T PF05804_consen 627 DLMHDKNAEIRKVCDNALDIIAEY 650 (708)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999988888877553
No 16
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.84 E-value=1e-18 Score=167.52 Aligned_cols=427 Identities=18% Similarity=0.170 Sum_probs=310.5
Q ss_pred HHHHHHHHHHHhhcChhHH----HHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHH
Q 005282 67 AAKTASHALVEFAKNEEIV----SLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVD 141 (704)
Q Consensus 67 ~~~~a~~~L~~l~~~~~~~----~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~ 141 (704)
+...+..++...+.++-.+ +.-+++++++.|.+...+++. ++-.+++++|+|+| ++.+.|..+.+
T Consensus 58 v~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~----------ev~~Q~~RaLgNiCydn~E~R~a~~~ 127 (604)
T KOG4500|consen 58 VYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDT----------EVHEQCFRALGNICYDNNENRAAFFN 127 (604)
T ss_pred hhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcc----------cHHHHHHHHHhhhhccCchhHHHHHh
Confidence 4556667777777654443 444566777777777777754 89999999999999 99999999999
Q ss_pred cCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc--CCCHHHHHHHHHHHHH
Q 005282 142 TGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLK--FVDVKVQRAAAGALRT 219 (704)
Q Consensus 142 ~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~~~~~a~~~L~~ 219 (704)
.||-+.++.+|+........ ...+....++..|.|...++...+.++.+.|+++.|...+. ..+....+..+....+
T Consensus 128 lgGaqivid~L~~~cs~d~~-ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~n 206 (604)
T KOG4500|consen 128 LGGAQIVIDVLKPYCSKDNP-ANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFN 206 (604)
T ss_pred cCCceehHhhhccccccCCc-cHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhcccc
Confidence 99999999999875432211 11377788888999999899999999999999999988876 4555555555555555
Q ss_pred hccC-CchhhHHhHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcC-CChhH---
Q 005282 220 LAFK-NDENKKLIVECNALPTLVLMLRS-EDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSS-SCSES--- 293 (704)
Q Consensus 220 l~~~-~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~--- 293 (704)
+..- .........+....-.+++++.+ .++++.+.+...+...+++ +..+-.+.+.|.+.-++.+++. ++..-
T Consensus 207 lls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aen-d~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d 285 (604)
T KOG4500|consen 207 LLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAEN-DLVKLSLAQNGLLEDSIDLVRNMKDFTKKTD 285 (604)
T ss_pred HHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcC-cceeeehhhcchHHHHHHHHHhcccccchHH
Confidence 5421 11223444556667778888864 5778889999999999866 6677778889999999998875 21111
Q ss_pred ----HHHHHHHHHHHhccCCcchHHHHhcC-ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHh
Q 005282 294 ----KREAALLLGQFAAADSNSKVHIVQRG-AVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKL 368 (704)
Q Consensus 294 ----~~~a~~~L~~l~~~~~~~~~~~~~~~-~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~l 368 (704)
...++....-+..+++ ....+...+ +++.+.+++.+.+......+..+++|+++.+.++..+++.+.+..|+.+
T Consensus 286 ~~~l~k~~~el~vllltGDe-SMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~ 364 (604)
T KOG4500|consen 286 MLNLFKRIAELDVLLLTGDE-SMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISC 364 (604)
T ss_pred HHHHHHhhhhHhhhhhcCch-HHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHH
Confidence 1222222222333343 334444444 8999999999999999999999999999999999999999999999999
Q ss_pred hc-----CCChhHHHHHHHHHHHcccCCchhhHHHhhCCccccccccccccc----chHHHHHHHHHHHHHh------hc
Q 005282 369 LD-----SKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQP----TKDCVARTLKRLEEKV------HG 433 (704)
Q Consensus 369 l~-----~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~----~~~~~~~~~~~~~~~~------~~ 433 (704)
+. +++.+++..++.+|+|+.-.-.++..+..+|..+.++...-...+ ..-.-.+.+....+.+ +.
T Consensus 365 l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~ 444 (604)
T KOG4500|consen 365 LMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNP 444 (604)
T ss_pred HHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCH
Confidence 83 357789999999999999999999999999998876532211111 1111112222222211 44
Q ss_pred chhHHHHHHHhhccHH-HHHHHHHHHHhccC---CCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282 434 RVLNHLLYLLRVADRA-VKRRVTLALAHLCA---PDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKA 506 (704)
Q Consensus 434 ~~~~~L~~ll~~~~~~-v~~~a~~~L~~l~~---~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 506 (704)
..+..|+.+.+++|-. +.....+.+..+.. ..+....+.+.|||+.++.++.+.|-..|..|..+|+.++..-
T Consensus 445 ~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~~y 521 (604)
T KOG4500|consen 445 ELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTESKY 521 (604)
T ss_pred HHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHHHHh
Confidence 6778889998887754 55566666666633 3344456678899999999999999999999999998877643
No 17
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.81 E-value=2.9e-19 Score=152.40 Aligned_cols=194 Identities=24% Similarity=0.423 Sum_probs=154.7
Q ss_pred HHhhcchhhhhhHHHHHHHHhhhcCCCCCCCCCCCCCchhhchHHhhhcCCCcccEEEEEc---CeEeehhHHHHhhcCH
Q 005282 483 LLESTSVKQREESSVALYKLATKATSLSPMDAAPPSPTQQVYLGEQFVNNPTLSDVTFVVE---GKQFYAHRICLLASSD 559 (704)
Q Consensus 483 ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~---~~~~~~hk~iL~~~s~ 559 (704)
.+++.+.+.++.++ .|..++.+.. ++.+.+.....+...++..+.++|+.|.++ ++.+++||.||++||+
T Consensus 21 aLQke~~E~~kkca-ll~a~a~keS------s~dSF~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD 93 (280)
T KOG4591|consen 21 ALQKEHAELEKKCA-LLAALACKES------SPDSFISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSD 93 (280)
T ss_pred HHHHHHHHHHHHHH-HHHHHHhccC------CchhHHHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcc
Confidence 34556666665543 3334443331 111233444555578899999999999997 4789999999999999
Q ss_pred HHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhcCcccc--ChhhHHHHHHHHhhhChHhHHHHHHHHHHhhCChhh
Q 005282 560 AFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDV--SVDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVEN 637 (704)
Q Consensus 560 ~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~--~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~ 637 (704)
|++ |.++..|. +.+..+.|.++++|...++|+||+.+++ .++.+.++.+.|++|+++.|++.|++-+...++.+|
T Consensus 94 ~Wk--faN~~dek-se~~~~dDad~Ea~~t~iRWIYTDEidfk~dD~~L~el~e~An~FqLe~Lke~C~k~l~a~l~V~N 170 (280)
T KOG4591|consen 94 FWK--FANGGDEK-SEELDLDDADFEAFHTAIRWIYTDEIDFKEDDEFLLELCELANRFQLELLKERCEKGLGALLHVDN 170 (280)
T ss_pred hhh--hccCCCcc-hhhhcccccCHHHHHHhheeeeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHhh
Confidence 987 44433332 3467788999999999999999999886 455688999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCChhhhccchhcHHHHHH
Q 005282 638 IMLMYELSEAYNATTLKQSCILFILEKFDKMRNKPWFFRLIRCVLPEIRN 687 (704)
Q Consensus 638 ~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~L~~~~~~~l~~ 687 (704)
|+++|++|++.+...|...|...|+.+|.++. .++|..+++..+.++.+
T Consensus 171 CIk~Ye~AEe~n~~qL~n~~~eiIA~~W~dL~-~a~FaqMs~aLLYklId 219 (280)
T KOG4591|consen 171 CIKFYEFAEELNARQLMNVAAEIIAGAWDDLG-KADFAQMSAALLYKLID 219 (280)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhccccC-hHHHHhccHHHHHHHHc
Confidence 99999999999999999999999999999975 57899998886666554
No 18
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.80 E-value=5.7e-18 Score=183.15 Aligned_cols=365 Identities=20% Similarity=0.206 Sum_probs=281.0
Q ss_pred HHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcCCcHHH
Q 005282 70 TASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTGALPHL 148 (704)
Q Consensus 70 ~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L 148 (704)
+-.+.+..++..++-+..+...|+++.|+++|.-++. -+.+.+.+|-.+|.||. ..|+....-.+. .+
T Consensus 213 e~ar~fLemSss~esCaamR~SgCLpLLvQilH~~d~-------~~kear~~A~aALHNIVhSqPD~kr~RRE~----kv 281 (2195)
T KOG2122|consen 213 EMARTFLEMSSSPESCAAMRRSGCLPLLVQILHGPDD-------EDKEARKRASAALHNIVHSQPDEKRGRREK----KV 281 (2195)
T ss_pred HHHHHHHHhccCchhhHHHHhccchHHHHHHhhCCch-------hhHHHHHHHHHHHHHHhhcCcchhhhHHHH----HH
Confidence 3468889999999999999999999999999998875 25689999999999999 666643322221 22
Q ss_pred HHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhh
Q 005282 149 VSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENK 228 (704)
Q Consensus 149 ~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~ 228 (704)
+.+|. .++.+|..+-..+-...+.. .-.++..-.-.|+.+|..+++ +++.|
T Consensus 282 L~lLe------------QIraYC~~~~~~lqar~~~~----------------apa~~~H~lcaA~~~lMK~SF-DEEhR 332 (2195)
T KOG2122|consen 282 LHLLE------------QIRAYCETCWTWLQARGPAI----------------APASDEHQLCAALCTLMKLSF-DEEHR 332 (2195)
T ss_pred HHHHH------------HHHHHHHHHHHHHHhcCCCC----------------CCcccchhhHHHHHHHHHhhc-cHHHH
Confidence 23332 45556555444443222211 111222333478888889997 89999
Q ss_pred HHhHhcCChHHHHHhhcC-----C-------CHHHHHHHHHHHHHHhcCChhhHHHHH-HcCCHHHHHHHhcCCChhHHH
Q 005282 229 KLIVECNALPTLVLMLRS-----E-------DASVHFEAVGVIGNLVHSSPSIKKEVI-LAGALQPVIGLLSSSCSESKR 295 (704)
Q Consensus 229 ~~~~~~~~i~~L~~lL~~-----~-------~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~ll~~~~~~~~~ 295 (704)
..+.+.|+++.+-.++.- . .-.+|+.+..+|.||+.++...+..+. ..|++..++..|.+...++..
T Consensus 333 ~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~Q 412 (2195)
T KOG2122|consen 333 HAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQ 412 (2195)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHH
Confidence 999999999999888761 1 236899999999999999877777666 478999999999998889999
Q ss_pred HHHHHHHHHhccCCcchH-HHHhcCChHHHHHhh-CCCCHHHHHHHHHHHHHhhcC-CchhhhHHhh-CChHHHHHhhcC
Q 005282 296 EAALLLGQFAAADSNSKV-HIVQRGAVRPLIEML-QSPDSQLKEMSAFALGRLAQD-THNQAGIAQD-GGILPLLKLLDS 371 (704)
Q Consensus 296 ~a~~~L~~l~~~~~~~~~-~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~-~~~~~L~~ll~~ 371 (704)
..+.+|.||+..-+.+.. .+.+.|-+..|.... +.......+.++.+||||+.+ .+|+..|... |++..|+.+|.-
T Consensus 413 V~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY 492 (2195)
T KOG2122|consen 413 VYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSY 492 (2195)
T ss_pred HHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccc
Confidence 999999999866555544 455568888887764 555656778899999999987 5677777664 778889999843
Q ss_pred ----CChhHHHHHHHHHHHccc----CCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHH
Q 005282 372 ----KNGSLQHNAAFALYGLAD----NEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLL 443 (704)
Q Consensus 372 ----~~~~v~~~a~~~L~~l~~----~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll 443 (704)
....+.+.+.++|.|.++ .+..++.+.+++ .+..|++.|
T Consensus 493 ~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~N---------------------------------CLq~LLQ~L 539 (2195)
T KOG2122|consen 493 EGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHN---------------------------------CLQTLLQHL 539 (2195)
T ss_pred cCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhh---------------------------------HHHHHHHHh
Confidence 345788999999999885 334444444433 455678888
Q ss_pred hhccHHHHHHHHHHHHhc-cCCCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhcC
Q 005282 444 RVADRAVKRRVTLALAHL-CAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKAT 507 (704)
Q Consensus 444 ~~~~~~v~~~a~~~L~~l-~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~ 507 (704)
++..-.+..++|++|+|| +++++.++.+.+.|+++.|..++.+.|..+..-++.+|.||....+
T Consensus 540 KS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 540 KSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred hhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence 999889999999999999 7899999999999999999999999999999999999999988764
No 19
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.79 E-value=1.2e-18 Score=169.60 Aligned_cols=164 Identities=25% Similarity=0.449 Sum_probs=147.5
Q ss_pred HhhhcCCCcccEEEEEcC-----eEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhcCcccc
Q 005282 527 EQFVNNPTLSDVTFVVEG-----KQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDV 601 (704)
Q Consensus 527 ~~~~~~~~~~d~~~~~~~-----~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~ 601 (704)
-.+++++.++|+.|++++ ..+++||.+|+..|++|.+||++++.+....+|.++|+.+.+|..+|+|+|++.+.+
T Consensus 106 ~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaaFl~~L~flYsdev~~ 185 (521)
T KOG2075|consen 106 AALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAAFLAFLRFLYSDEVKL 185 (521)
T ss_pred HhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhHhHHHHHHHhcchhhh
Confidence 367889999999999973 689999999999999999999999999978899999999999999999999999999
Q ss_pred ChhhHHHHHHHHhhhChHhHHHHHHHHHHhhCChhhHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHHhhCChhhhccchh
Q 005282 602 SVDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYEL-SEAYNATTLKQSCILFILEKFDKMRNKPWFFRLIRC 680 (704)
Q Consensus 602 ~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~~~~-a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~L~~~ 680 (704)
..+++..++.+|++|.++.|.+.|.++|..++.+.|.+..+-- |..++-++|.+.|++-|..+|.+....++|-+....
T Consensus 186 ~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~~~al~~EGf~did~~ 265 (521)
T KOG2075|consen 186 AADTVITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQRAKLFDEPSLISICLEVIDKSFEDALTPEGFCDIDST 265 (521)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHHHhhhCccceeehhhH
Confidence 9999999999999999999999999999998888887665555 999999999999999999999999999999998733
Q ss_pred cHHHHHHHHHH
Q 005282 681 VLPEIRNYFTK 691 (704)
Q Consensus 681 ~~~~l~~~~~~ 691 (704)
++.+.+.+++
T Consensus 266 -~dt~~evl~r 275 (521)
T KOG2075|consen 266 -RDTYEEVLRR 275 (521)
T ss_pred -HHHHHHHHhh
Confidence 4444444443
No 20
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=1.6e-16 Score=147.84 Aligned_cols=344 Identities=17% Similarity=0.238 Sum_probs=272.4
Q ss_pred HHHHHHHHHhhcC----ChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCC
Q 005282 119 EKECAFALGLLAV----KPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDG 194 (704)
Q Consensus 119 ~~~a~~~L~~l~~----~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 194 (704)
-++....|.++++ +..+|-.-...|..+.++-.+..... + ...+...++.+|..+....|+ +.+..+
T Consensus 76 ~~E~s~ll~~l~d~ck~~~A~r~la~~~ga~~~~it~~~la~~-~----~~~~l~ksL~al~~lt~~qpd----l~da~g 146 (461)
T KOG4199|consen 76 LEETTELLEQLADECKKSLAHRVLAGKNGAHDALITLLELAES-P----NESVLKKSLEAINSLTHKQPD----LFDAEA 146 (461)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHhccCCCcchhhhHHHHhhC-C----chhHHHHHHHHHHHhhcCCcc----hhcccc
Confidence 3445556666662 22233344456788888877764222 1 237888999999999876665 566788
Q ss_pred cHHHHHHhc--CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCh----
Q 005282 195 IPPLVELLK--FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR-SEDASVHFEAVGVIGNLVHSSP---- 267 (704)
Q Consensus 195 i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~---- 267 (704)
+..++.+|. .++.++....+..+..-|..++.+++.+++.++++.+...|. .+...+.+..+|+++-+...++
T Consensus 147 ~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~ 226 (461)
T KOG4199|consen 147 MAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVV 226 (461)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeee
Confidence 999999987 467788888899999888889999999999999999997665 4555789999999999986643
Q ss_pred -----hhHHHHHHcCCHHHHHHHhcC-CChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCC-CCH---HHHH
Q 005282 268 -----SIKKEVILAGALQPVIGLLSS-SCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQS-PDS---QLKE 337 (704)
Q Consensus 268 -----~~~~~~~~~~~l~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~---~v~~ 337 (704)
.....+...|++..|++.+.- -++.+...++.+|..++. ..+..+.+.+.|++..|++++.+ ++. +..+
T Consensus 227 fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAV-r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k 305 (461)
T KOG4199|consen 227 FGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAV-RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAK 305 (461)
T ss_pred cchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHH-HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHH
Confidence 234557778889999998864 357788899999999986 55677789999999999999986 333 3557
Q ss_pred HHHHHHHHhhcCCchhhhHHhhCChHHHHHhh--cCCChhHHHHHHHHHHHcc-cCCchhhHHHhhCCcccccccccccc
Q 005282 338 MSAFALGRLAQDTHNQAGIAQDGGILPLLKLL--DSKNGSLQHNAAFALYGLA-DNEDNVADLVRVGGVQKLQDGEFTVQ 414 (704)
Q Consensus 338 ~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll--~~~~~~v~~~a~~~L~~l~-~~~~~~~~l~~~g~i~~l~~~~~~~~ 414 (704)
.++..|..++..+..+..+++.|+.+.++.++ ++++|.+...++.++.-|+ +.|++...+++.|+-...++
T Consensus 306 ~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avq------ 379 (461)
T KOG4199|consen 306 TCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQ------ 379 (461)
T ss_pred HHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHH------
Confidence 88999999999999999999999999999887 6689999999999999999 59999999999888554322
Q ss_pred cchHHHHHHHHHHHHHhhcchhHHHHHHH--hhccHHHHHHHHHHHHhc-cCCCccceeeecCCcHHHHHHHHhhcchhh
Q 005282 415 PTKDCVARTLKRLEEKVHGRVLNHLLYLL--RVADRAVKRRVTLALAHL-CAPDDCKTIFIDNNGLELLLGLLESTSVKQ 491 (704)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~L~~ll--~~~~~~v~~~a~~~L~~l-~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~ 491 (704)
-+ +.....+|.+|||.|.|+ .++..++..++ ..|++.|++...+.|+.+
T Consensus 380 ---------------------------AmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l-~~GiE~Li~~A~~~h~tc 431 (461)
T KOG4199|consen 380 ---------------------------AMKAHPVAAQVQRNACNMIRNIVVRSAENRTILL-ANGIEKLIRTAKANHETC 431 (461)
T ss_pred ---------------------------HHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHH-hccHHHHHHHHHhcCccH
Confidence 22 233567999999999999 56777777765 469999999999999999
Q ss_pred hhhHHHHHHHHhhhc
Q 005282 492 REESSVALYKLATKA 506 (704)
Q Consensus 492 ~~~a~~~L~~L~~~~ 506 (704)
...|..+|..|.-+.
T Consensus 432 e~~akaALRDLGc~v 446 (461)
T KOG4199|consen 432 EAAAKAALRDLGCDV 446 (461)
T ss_pred HHHHHHHHHhcCcch
Confidence 999999999987755
No 21
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.78 E-value=1.1e-17 Score=174.21 Aligned_cols=360 Identities=23% Similarity=0.279 Sum_probs=275.6
Q ss_pred ChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHH
Q 005282 93 AVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRA 171 (704)
Q Consensus 93 ~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a 171 (704)
-+|..+.+|...++ .++..|+.-+..+| ++.+.+..+.+.|+|+.|+.+|..... +++.++
T Consensus 234 ~lpe~i~mL~~q~~----------~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~--------evq~~a 295 (717)
T KOG1048|consen 234 TLPEVISMLMSQDP----------SVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRND--------EVQRQA 295 (717)
T ss_pred ccHHHHHHHhccCh----------hhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcH--------HHHHHH
Confidence 36777888887765 89999999999999 899999999999999999999999887 999999
Q ss_pred HHHHHHhhhcChh--hhhhhhccCCcHHHHHHhcC-CCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCC-
Q 005282 172 ADAITNLAHENAN--IKTRVRVEDGIPPLVELLKF-VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSE- 247 (704)
Q Consensus 172 ~~~L~~l~~~~~~--~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~- 247 (704)
+++|.||..++.. ++..+...++++.++++|+. .|.++++.+..+||||+. ++..+..++.. .+..|..-+-.+
T Consensus 296 cgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS-~D~lK~~ii~~-al~tLt~~vI~P~ 373 (717)
T KOG1048|consen 296 CGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSS-NDALKMLIITS-ALSTLTDNVIIPH 373 (717)
T ss_pred HHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccc-hhHHHHHHHHH-HHHHHHHhhcccc
Confidence 9999999976655 78889999999999999995 899999999999999996 55555554443 455555543211
Q ss_pred -------------CHHHHHHHHHHHHHHhcCChhhHHHHHH-cCCHHHHHHHhc------CCChhHHHHHHHHHHHHhcc
Q 005282 248 -------------DASVHFEAVGVIGNLVHSSPSIKKEVIL-AGALQPVIGLLS------SSCSESKREAALLLGQFAAA 307 (704)
Q Consensus 248 -------------~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~ll~------~~~~~~~~~a~~~L~~l~~~ 307 (704)
+..+...+..+|.|++....+.++.+.+ .|.|+.|+..++ ..+....++|+..+.|+.-.
T Consensus 374 Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYr 453 (717)
T KOG1048|consen 374 SGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYR 453 (717)
T ss_pred cccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCch
Confidence 2567889999999999877888888876 688999998886 33556678888888888621
Q ss_pred CC-----c--------------------------chHH----------------------HHhcCChHHHHHhhC-CCCH
Q 005282 308 DS-----N--------------------------SKVH----------------------IVQRGAVRPLIEMLQ-SPDS 333 (704)
Q Consensus 308 ~~-----~--------------------------~~~~----------------------~~~~~~i~~L~~ll~-~~~~ 333 (704)
-. . .... +....++..-+.++. +.+.
T Consensus 454 l~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~ 533 (717)
T KOG1048|consen 454 LEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKND 533 (717)
T ss_pred hhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcch
Confidence 11 0 0000 001112233233333 4567
Q ss_pred HHHHHHHHHHHHhhcCCc-----hhhhH-HhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHHHhhCCccccc
Q 005282 334 QLKEMSAFALGRLAQDTH-----NQAGI-AQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQ 407 (704)
Q Consensus 334 ~v~~~a~~~L~~l~~~~~-----~~~~~-~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~ 407 (704)
.+.+.++.+|.|++.+.. .+..+ .++.+++.|+++++.++..+.+.++.+|+||+.+..++..|. .++++-|
T Consensus 534 ~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~lig-k~a~~~l- 611 (717)
T KOG1048|consen 534 NTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIG-KYAIPDL- 611 (717)
T ss_pred HHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhh-cchHHHH-
Confidence 889999999999996532 22333 677899999999999999999999999999999999998887 3444443
Q ss_pred ccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhh------ccHHHHHHHHHHHHhcc-CCCccceeeecCCcHHHH
Q 005282 408 DGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRV------ADRAVKRRVTLALAHLC-APDDCKTIFIDNNGLELL 480 (704)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~------~~~~v~~~a~~~L~~l~-~~~~~~~~l~~~~~i~~L 480 (704)
+..+.. .+.++...+|.+|.++. .+..+...+.+.+|++.|
T Consensus 612 --------------------------------v~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL 659 (717)
T KOG1048|consen 612 --------------------------------VRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKL 659 (717)
T ss_pred --------------------------------HHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHH
Confidence 333322 23678888999999995 577888888999999999
Q ss_pred HHHHhh-cchhhhhhHHHHHHHHhhhc
Q 005282 481 LGLLES-TSVKQREESSVALYKLATKA 506 (704)
Q Consensus 481 ~~ll~~-~~~~~~~~a~~~L~~L~~~~ 506 (704)
+-+..+ .++.+.++|...|..|=.+.
T Consensus 660 ~~I~~s~~S~k~~kaAs~vL~~lW~y~ 686 (717)
T KOG1048|consen 660 RLISKSQHSPKEFKAASSVLDVLWQYK 686 (717)
T ss_pred HHHhcccCCHHHHHHHHHHHHHHHHHH
Confidence 999887 44567777777777665433
No 22
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.75 E-value=6.2e-18 Score=142.90 Aligned_cols=106 Identities=32% Similarity=0.649 Sum_probs=95.6
Q ss_pred HhhhcCCCcccEEEEEc-CeEeehhHHHHhhcCHHHHHhhcCC-CCCCCCCceEcCCCCHHHHHHHHHHHhcCccccC-h
Q 005282 527 EQFVNNPTLSDVTFVVE-GKQFYAHRICLLASSDAFRAMFDGG-YKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDVS-V 603 (704)
Q Consensus 527 ~~~~~~~~~~d~~~~~~-~~~~~~hk~iL~~~s~~f~~~f~~~-~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~-~ 603 (704)
+++++.+.++|++|.++ |..|+|||.+|+++|+||+.+|.+. +.+....+|.++++++++|..+++|+|+|.+.++ .
T Consensus 2 ~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~~~ 81 (111)
T PF00651_consen 2 NDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEINSD 81 (111)
T ss_dssp HHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE-T
T ss_pred hHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCcccCCHH
Confidence 46788899999999999 8999999999999999999999998 5666666899999999999999999999999998 9
Q ss_pred hhHHHHHHHHhhhChHhHHHHHHHHHHhh
Q 005282 604 DIAQDLLRAADQYLLEGLKRLCEYSIAQI 632 (704)
Q Consensus 604 ~~~~~ll~~A~~~~~~~l~~~c~~~l~~~ 632 (704)
+++.+++.+|++|+++.|++.|+.+|.+.
T Consensus 82 ~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 82 ENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp TTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 99999999999999999999999999764
No 23
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.74 E-value=1.1e-17 Score=158.79 Aligned_cols=165 Identities=21% Similarity=0.383 Sum_probs=151.4
Q ss_pred chhhchHHhhhcCCCcccEEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEc----CCCCHHHHHHHHHHHh
Q 005282 520 TQQVYLGEQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEI----PNIRWNVFELMMRFIY 595 (704)
Q Consensus 520 ~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l----~~~~~~~~~~~l~~~Y 595 (704)
..+.+++..++.++..+||.+.+-|.++..||..|+ .|+||++||+|.|+|+++..|.+ |.++..+|...+.-+|
T Consensus 54 ~t~kyiyq~lf~q~enSDv~l~alg~eWrlHk~yL~-QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY 132 (488)
T KOG4682|consen 54 QTQKYIYQNLFLQGENSDVILEALGFEWRLHKPYLF-QSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLY 132 (488)
T ss_pred HHHHHHHHHHHhcCCCcceehhhccceeeeeeeeee-ccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhh
Confidence 345677788999999999999999999999999999 89999999999999999887766 4699999999999999
Q ss_pred cCccccChhhHHHHHHHHhhhChHhHHHHHHHHHHhhCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCChhhh
Q 005282 596 TGNVDVSVDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNATTLKQSCILFILEKFDKMRNKPWFF 675 (704)
Q Consensus 596 ~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~ 675 (704)
.+.+++..+.+..++.+|.+++++++.+.|.+.+...+++.+++.+|..+..|+...+++.|..|...|+-.+....-+.
T Consensus 133 ~dEveI~l~dv~gvlAaA~~lqldgl~qrC~evMie~lspkta~~yYea~ckYgle~vk~kc~ewl~~nl~~i~~~q~l~ 212 (488)
T KOG4682|consen 133 RDEVEIKLSDVVGVLAAACLLQLDGLIQRCGEVMIETLSPKTACGYYEAACKYGLESVKKKCLEWLLNNLMTIQNVQLLK 212 (488)
T ss_pred hhheeccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcChhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhHhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888766777
Q ss_pred ccchhcHHHH
Q 005282 676 RLIRCVLPEI 685 (704)
Q Consensus 676 ~L~~~~~~~l 685 (704)
+++.+....+
T Consensus 213 ei~~~Lm~~l 222 (488)
T KOG4682|consen 213 EISINLMKQL 222 (488)
T ss_pred hcCHHHHHHH
Confidence 7776644433
No 24
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=7.1e-15 Score=137.06 Aligned_cols=311 Identities=17% Similarity=0.220 Sum_probs=257.3
Q ss_pred HHHHHHHHHHHHHhhcC-hhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHc
Q 005282 65 RAAAKTASHALVEFAKN-EEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDT 142 (704)
Q Consensus 65 ~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~ 142 (704)
.....+++.+|..+... |. +.+..++..++.+|..... +.++-....+.+..-| .++.+|+.+.+.
T Consensus 121 ~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~--------~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~ 188 (461)
T KOG4199|consen 121 ESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVE--------SEEVTLLTLQWLQKACIMHEVNRQLFMEL 188 (461)
T ss_pred hhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccc--------hHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 33456666666666542 33 4578889999999988776 6689889999999999 999999999999
Q ss_pred CCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcCh---------hhhhhhhccCCcHHHHHHhc-CCCHHHHHH
Q 005282 143 GALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENA---------NIKTRVRVEDGIPPLVELLK-FVDVKVQRA 212 (704)
Q Consensus 143 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~---------~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~ 212 (704)
++++.+.+.|...... .+.+..+|++.-+..+++ .....+...|++..|++.+. .-+|.+...
T Consensus 189 ~il~Li~~~l~~~gk~-------~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~ 261 (461)
T KOG4199|consen 189 KILELILQVLNREGKT-------RTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVS 261 (461)
T ss_pred hHHHHHHHHHcccCcc-------HHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHH
Confidence 9999999888776542 688899999999875321 22446778888999999998 346899999
Q ss_pred HHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCC-HH---HHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhc-
Q 005282 213 AAGALRTLAFKNDENKKLIVECNALPTLVLMLRSED-AS---VHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLS- 287 (704)
Q Consensus 213 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~---v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~- 287 (704)
++.+|..|+. +++..+.+.+.|++..++.++.+.+ .. ..+.+++.|..++ +++..+..+++.|+.+.++.++.
T Consensus 262 l~~tl~~lAV-r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii~l~~~ 339 (461)
T KOG4199|consen 262 LSTTLKALAV-RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKIITLALR 339 (461)
T ss_pred HHHHHHHHHH-HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHHHHHHH
Confidence 9999999997 8899999999999999999998743 33 4468888999998 45788999999999999998873
Q ss_pred -CCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhcCCchhhhHHhhCChHH
Q 005282 288 -SSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSP--DSQLKEMSAFALGRLAQDTHNQAGIAQDGGILP 364 (704)
Q Consensus 288 -~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~ 364 (704)
+.++.+...++.++.-++-..++....+++.|+-...+..++.. ...+++++|+++.|++..+.....++-..|++.
T Consensus 340 h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~ 419 (461)
T KOG4199|consen 340 HSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEK 419 (461)
T ss_pred cCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHH
Confidence 56788889999999999988999999999999999999999754 357899999999999988777777777888999
Q ss_pred HHHhhcCCChhHHHHHHHHHHHcccCCchhhH
Q 005282 365 LLKLLDSKNGSLQHNAAFALYGLADNEDNVAD 396 (704)
Q Consensus 365 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 396 (704)
|+..-+..++.....+-.+|+-|..+.+.++.
T Consensus 420 Li~~A~~~h~tce~~akaALRDLGc~v~lre~ 451 (461)
T KOG4199|consen 420 LIRTAKANHETCEAAAKAALRDLGCDVYLREE 451 (461)
T ss_pred HHHHHHhcCccHHHHHHHHHHhcCcchhhHHH
Confidence 99998888999999999999999877666544
No 25
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.73 E-value=7.7e-18 Score=173.00 Aligned_cols=162 Identities=22% Similarity=0.386 Sum_probs=145.6
Q ss_pred CCcccEEEEE-cCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhc-Ccccc-----Chhh
Q 005282 533 PTLSDVTFVV-EGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYT-GNVDV-----SVDI 605 (704)
Q Consensus 533 ~~~~d~~~~~-~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~-~~~~~-----~~~~ 605 (704)
+..-|+.|.+ +|++++|||++|++|++||..||...|.|++.-.+....++.+.+..+|+|+|+ ++..+ ..+.
T Consensus 708 ~e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF 787 (1267)
T KOG0783|consen 708 EETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDF 787 (1267)
T ss_pred ccceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchHHHHhccchhhh
Confidence 4556777777 678899999999999999999999999999876666667789999999999995 44432 5678
Q ss_pred HHHHHHHHhhhChHhHHHHHHHHHHhhCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCChhhhccchhcHHHH
Q 005282 606 AQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNATTLKQSCILFILEKFDKMRNKPWFFRLIRCVLPEI 685 (704)
Q Consensus 606 ~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~L~~~~~~~l 685 (704)
+.+++.+||.|.+.+|++.|+..|.+.++..+|..+++||..|++..|+..|++||+.|+..+..-....+++..++..+
T Consensus 788 ~~~il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~llefaamY~ak~L~~~C~dfic~N~~~~Learsi~~~dg~~LK~l 867 (1267)
T KOG0783|consen 788 MFEILSIADQLLILELKSICEQSLLRKLNLKTLPTLLEFAAMYHAKELYSRCIDFICHNIEFFLEARSISEWDGFHLKKL 867 (1267)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHhccHhhhcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998888888888899999
Q ss_pred HHHHHHhcC
Q 005282 686 RNYFTKAFS 694 (704)
Q Consensus 686 ~~~~~~~~~ 694 (704)
.+++++.+.
T Consensus 868 ~~~yrkm~~ 876 (1267)
T KOG0783|consen 868 AQRYRKMLS 876 (1267)
T ss_pred HHHHHHHhh
Confidence 999888764
No 26
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.72 E-value=2.3e-16 Score=164.56 Aligned_cols=366 Identities=25% Similarity=0.289 Sum_probs=265.0
Q ss_pred CcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC
Q 005282 144 ALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFK 223 (704)
Q Consensus 144 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 223 (704)
-++..+.+|.+..+ .++..|...+..+|..+...+..+.+.|+|+.|+.++.+.+.+++..|+++|.||..+
T Consensus 234 ~lpe~i~mL~~q~~--------~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~ 305 (717)
T KOG1048|consen 234 TLPEVISMLMSQDP--------SVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFG 305 (717)
T ss_pred ccHHHHHHHhccCh--------hhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcc
Confidence 35677777776665 8999999999999999999999999999999999999999999999999999999987
Q ss_pred Cch--hhHHhHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCC-----------
Q 005282 224 NDE--NKKLIVECNALPTLVLMLRS-EDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSS----------- 289 (704)
Q Consensus 224 ~~~--~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~----------- 289 (704)
... ++-.+.+.++++.++++|+. .|.++++.+..+|+||++. +..+..++ ...+..|..-+-.+
T Consensus 306 ~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii-~~al~tLt~~vI~P~Sgw~~~~~~~ 383 (717)
T KOG1048|consen 306 KSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLII-TSALSTLTDNVIIPHSGWEEEPAPR 383 (717)
T ss_pred cCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHH-HHHHHHHHHhhcccccccCCCCccc
Confidence 665 88889999999999999995 7999999999999999976 44444333 34455555433211
Q ss_pred ---ChhHHHHHHHHHHHHhccCCcchHHHHhc-CChHHHHHhhC------CCCHHHHHHHHHHHHHhhcCCc-----h--
Q 005282 290 ---CSESKREAALLLGQFAAADSNSKVHIVQR-GAVRPLIEMLQ------SPDSQLKEMSAFALGRLAQDTH-----N-- 352 (704)
Q Consensus 290 ---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~ll~------~~~~~v~~~a~~~L~~l~~~~~-----~-- 352 (704)
+..+..++..+|.|+++...+.++.+.+. |+|+.|+..++ ..+.+..+++...|.|++..-+ .
T Consensus 384 ~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~ 463 (717)
T KOG1048|consen 384 KAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYR 463 (717)
T ss_pred ccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhh
Confidence 24567899999999998777888878775 89999999886 2467788999999999974211 0
Q ss_pred -------------------------hhh----------------------HHhhCChHHHHHhh-cCCChhHHHHHHHHH
Q 005282 353 -------------------------QAG----------------------IAQDGGILPLLKLL-DSKNGSLQHNAAFAL 384 (704)
Q Consensus 353 -------------------------~~~----------------------~~~~~~~~~L~~ll-~~~~~~v~~~a~~~L 384 (704)
..+ ++....+.+-+.++ .+.+..+.+.++++|
T Consensus 464 ~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaL 543 (717)
T KOG1048|consen 464 QVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGAL 543 (717)
T ss_pred hHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhH
Confidence 000 11112233323333 456778888899999
Q ss_pred HHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCC
Q 005282 385 YGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAP 464 (704)
Q Consensus 385 ~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 464 (704)
.|++...-.-...+...++. ....+++++.+++.+++.+...++.+|.||+.+
T Consensus 544 QNltA~~~~~~~~~~~~v~~---------------------------kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d 596 (717)
T KOG1048|consen 544 QNLTAGLWTWSEYMRGAVFR---------------------------KEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD 596 (717)
T ss_pred hhhhccCCcchhHHHhhhhh---------------------------hccCccHHHHHHhcCCchHHHHHHHHHhhhccC
Confidence 99875322221111111111 123567899999999999999999999999999
Q ss_pred CccceeeecCCcHHHHHHHHhhcc------hhhhhhHHHHHHHHhhhcCCCCCCCCCCCCCchhhchHHhhhcCCCcccE
Q 005282 465 DDCKTIFIDNNGLELLLGLLESTS------VKQREESSVALYKLATKATSLSPMDAAPPSPTQQVYLGEQFVNNPTLSDV 538 (704)
Q Consensus 465 ~~~~~~l~~~~~i~~L~~ll~~~~------~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~ 538 (704)
..++..+- .++++.|++.+..+. .++-..+...|.++..+.. ...+.++..+..-..
T Consensus 597 ~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~----------------~nAkdl~~~~g~~kL 659 (717)
T KOG1048|consen 597 IRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNV----------------LNAKDLLEIKGIPKL 659 (717)
T ss_pred chhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhH----------------HHHHHHHhccChHHH
Confidence 99998865 789999999997533 4566667777888876542 223455555554444
Q ss_pred EEEEcCeEeehhHHHHhhcCHHHHHhhc
Q 005282 539 TFVVEGKQFYAHRICLLASSDAFRAMFD 566 (704)
Q Consensus 539 ~~~~~~~~~~~hk~iL~~~s~~f~~~f~ 566 (704)
..+..+ +.|-....+.|.|...|..
T Consensus 660 ~~I~~s---~~S~k~~kaAs~vL~~lW~ 684 (717)
T KOG1048|consen 660 RLISKS---QHSPKEFKAASSVLDVLWQ 684 (717)
T ss_pred HHHhcc---cCCHHHHHHHHHHHHHHHH
Confidence 444433 3333445555666666654
No 27
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.72 E-value=2.8e-16 Score=170.29 Aligned_cols=338 Identities=21% Similarity=0.226 Sum_probs=258.3
Q ss_pred HHHhhhcc-CCchhhHHHHHHHHHHHHHhhc-ChhHHHHHHhCCChHHHH----------hhccCCCcCCCCCCCCchHH
Q 005282 51 IDILNSKF-SSDETDRAAAKTASHALVEFAK-NEEIVSLIVDNGAVPALV----------EHLQTPPQLTNAQIPYEHEV 118 (704)
Q Consensus 51 ~~~l~~~~-~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~----------~lL~~~~~~~~~~~~~d~~v 118 (704)
+++|++++ ..+.++...+..|-.+|.|+.. .|+....=.+..++..|- ..++.... ...+.++ +-
T Consensus 237 LpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~-~~apa~~--~H 313 (2195)
T KOG2122|consen 237 LPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGP-AIAPASD--EH 313 (2195)
T ss_pred hHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCccc--ch
Confidence 34444444 3444466788999999999976 343322222222222222 23333332 1222232 23
Q ss_pred HH-HHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCC----CCcchhHHHHHHHHHHHHhhhcChhhhhhhhc-c
Q 005282 119 EK-ECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGG----NSRALSGVIRRAADAITNLAHENANIKTRVRV-E 192 (704)
Q Consensus 119 ~~-~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~----~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~ 192 (704)
+. .|+.+|.+++.++++|..+.+.|+++.+-+++.-..... ....-..+++++..+|.||.+++..++..+.. .
T Consensus 314 ~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~r 393 (2195)
T KOG2122|consen 314 QLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQR 393 (2195)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhh
Confidence 33 788899999999999999999999999999886532111 11112389999999999999888887776554 6
Q ss_pred CCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHH-hHhcCChHHHHHh-hcCCCHHHHHHHHHHHHHHhcCChhhH
Q 005282 193 DGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKL-IVECNALPTLVLM-LRSEDASVHFEAVGVIGNLVHSSPSIK 270 (704)
Q Consensus 193 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~~i~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~ 270 (704)
|++..++..|.+...++......+|+||+...+.+-.. +.+.|-+..|+.. ++...+.....++.+||||+.+..+++
T Consensus 394 gfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNK 473 (2195)
T KOG2122|consen 394 GFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENK 473 (2195)
T ss_pred hHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccc
Confidence 78999999999999899999999999999866655444 5577878777764 556677889999999999999998888
Q ss_pred HHHHH-cCCHHHHHHHhcCC----ChhHHHHHHHHHHHHhc---cCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHH
Q 005282 271 KEVIL-AGALQPVIGLLSSS----CSESKREAALLLGQFAA---ADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFA 342 (704)
Q Consensus 271 ~~~~~-~~~l~~L~~ll~~~----~~~~~~~a~~~L~~l~~---~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~ 342 (704)
..+.. .|.+..|+.+|.-. .-.+.+.+-.+|.|.+. ..++.++.+.+++.+..|+..|++.+..+..++|.+
T Consensus 474 A~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGT 553 (2195)
T KOG2122|consen 474 AEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGT 553 (2195)
T ss_pred hhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhh
Confidence 88886 68899999999643 34567778888888653 356788889999999999999999999999999999
Q ss_pred HHHhh-cCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCC
Q 005282 343 LGRLA-QDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNE 391 (704)
Q Consensus 343 L~~l~-~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 391 (704)
||||+ ..++.+..+++.|++..|..++++++..+.+-++.+|.||..+.
T Consensus 554 LWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 554 LWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 99998 56778888999999999999999999999999999999998655
No 28
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.69 E-value=3.9e-14 Score=150.94 Aligned_cols=393 Identities=19% Similarity=0.217 Sum_probs=285.7
Q ss_pred HHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcCCcH
Q 005282 68 AKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTGALP 146 (704)
Q Consensus 68 ~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~ 146 (704)
...++.+|..+......... ..+..+.|...|.++++ .||..+++.|+++. .+......+.+.+.++
T Consensus 55 v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h~~~----------~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~ 122 (503)
T PF10508_consen 55 VELICDILKRLLSALSPDSL--LPQYQPFLQRGLTHPSP----------KVRRLALKQLGRIARHSEGAAQLLVDNELLP 122 (503)
T ss_pred HHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcCCCH----------HHHHHHHHHHHHHhcCCHHHHHHhcCccHHH
Confidence 45566667766653222121 45668999999998865 99999999999999 5556677888899999
Q ss_pred HHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCch
Q 005282 147 HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDE 226 (704)
Q Consensus 147 ~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 226 (704)
.++..+.+.+. .+...|..+|.+++... .....++..+.+..|..++..++..+|..+..++.+++..+++
T Consensus 123 ~i~~~L~~~d~--------~Va~~A~~~L~~l~~~~-~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~ 193 (503)
T PF10508_consen 123 LIIQCLRDPDL--------SVAKAAIKALKKLASHP-EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPE 193 (503)
T ss_pred HHHHHHcCCcH--------HHHHHHHHHHHHHhCCc-hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHH
Confidence 99999998876 99999999999999744 4445677888899999999998889999999999999988899
Q ss_pred hhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhH-----H-HHHHHH
Q 005282 227 NKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSES-----K-REAALL 300 (704)
Q Consensus 227 ~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~-----~-~~a~~~ 300 (704)
....+.+.|+++.++..+.++|.-++..++.+|..++. .+...+.+.+.|+++.|..++.+...+. . -..+..
T Consensus 194 ~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f 272 (503)
T PF10508_consen 194 AAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKF 272 (503)
T ss_pred HHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHH
Confidence 99999999999999999999999999999999999998 5777888999999999999996543222 2 222356
Q ss_pred HHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhH-HhhC-ChHHHH----HhhcCCCh
Q 005282 301 LGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGI-AQDG-GILPLL----KLLDSKNG 374 (704)
Q Consensus 301 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~-~~~~-~~~~L~----~ll~~~~~ 374 (704)
.++++...+..... .-..++..+..++.+.|+..+..|..+++.++...+++..+ ...+ .+..++ ....++..
T Consensus 273 ~g~la~~~~~~v~~-~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~ 351 (503)
T PF10508_consen 273 FGNLARVSPQEVLE-LYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGST 351 (503)
T ss_pred HHHHHhcChHHHHH-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCch
Confidence 66776543322211 11245667777788899999999999999999988888777 4333 334433 34456778
Q ss_pred hHHHHHHHHHHHccc--CCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhH-HHHHHHhhccHHHH
Q 005282 375 SLQHNAAFALYGLAD--NEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLN-HLLYLLRVADRAVK 451 (704)
Q Consensus 375 ~v~~~a~~~L~~l~~--~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~L~~ll~~~~~~v~ 451 (704)
+++..+..+|.++-. .+.....+.. ....+-....+.... .++.+++.+-+++|
T Consensus 352 ~lk~r~l~al~~il~~~~~~~~~~i~~-----------------------~~~~w~~~~~~~~~~~~l~~~~~qPF~elr 408 (503)
T PF10508_consen 352 ELKLRALHALASILTSGTDRQDNDILS-----------------------ITESWYESLSGSPLSNLLMSLLKQPFPELR 408 (503)
T ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHH-----------------------HHHHHHHHhcCCchHHHHHHHhcCCchHHH
Confidence 899999999999953 2222222221 111111111222233 67788888889999
Q ss_pred HHHHHHHHhccCCCccceeeecC-CcHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282 452 RRVTLALAHLCAPDDCKTIFIDN-NGLELLLGLLESTSVKQREESSVALYKLATKA 506 (704)
Q Consensus 452 ~~a~~~L~~l~~~~~~~~~l~~~-~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 506 (704)
.++...|..++..+-+...+... |-++.|+.--...+.+.+..=-.++..|+..+
T Consensus 409 ~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~~ 464 (503)
T PF10508_consen 409 CAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKSS 464 (503)
T ss_pred HHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 99999999998766555445544 44444444433455555555555555666544
No 29
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.68 E-value=8.8e-15 Score=140.84 Aligned_cols=354 Identities=16% Similarity=0.096 Sum_probs=265.9
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcH
Q 005282 117 EVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIP 196 (704)
Q Consensus 117 ~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 196 (704)
.++..+..+++..+.++.-|..+....+...++..|+....++ +.++..+++++|+|+|.++.+.|..+...||-+
T Consensus 57 tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~----d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaq 132 (604)
T KOG4500|consen 57 TVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSP----DTEVHEQCFRALGNICYDNNENRAAFFNLGGAQ 132 (604)
T ss_pred hhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCC----cccHHHHHHHHHhhhhccCchhHHHHHhcCCce
Confidence 5788888999999988777777766655455555555443332 138999999999999999999999999999988
Q ss_pred HHHHHhcC----C---CHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc--CCCHHHHHHHHHHHHHHhcCC-
Q 005282 197 PLVELLKF----V---DVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR--SEDASVHFEAVGVIGNLVHSS- 266 (704)
Q Consensus 197 ~L~~ll~~----~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~- 266 (704)
.+++.|+. + +.+....+.+.|.|...++.+.+.+.++.|+++.|...+. -.+....+..+-...|+.+--
T Consensus 133 ivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~ 212 (604)
T KOG4500|consen 133 IVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVC 212 (604)
T ss_pred ehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHH
Confidence 88877772 2 2467778889999999899999999999999999988765 456666666666555554321
Q ss_pred hhhHHHHHHcCCHHHHHHHhcCC-ChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCC-CC-------HHHHH
Q 005282 267 PSIKKEVILAGALQPVIGLLSSS-CSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQS-PD-------SQLKE 337 (704)
Q Consensus 267 ~~~~~~~~~~~~l~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~-------~~v~~ 337 (704)
+.......+....-.+++++.+. ++++.+.+...+...+. ++..+..+.+.|.++.++.+++. ++ -..-.
T Consensus 213 e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~ae-nd~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k 291 (604)
T KOG4500|consen 213 EMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAE-NDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFK 291 (604)
T ss_pred HhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhc-CcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHH
Confidence 11222233455566677777543 45667777777777764 66777788999999999999865 22 23344
Q ss_pred HHHHHHHHhhcCCchhhhHHhhC-ChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHHHhhCCcccccccccccccc
Q 005282 338 MSAFALGRLAQDTHNQAGIAQDG-GILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPT 416 (704)
Q Consensus 338 ~a~~~L~~l~~~~~~~~~~~~~~-~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~ 416 (704)
.++....-+..+++.-.++...+ .++.+...+.+.+.+.+..+.-+++|+++...++.++++.|.+..|.+
T Consensus 292 ~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~-------- 363 (604)
T KOG4500|consen 292 RIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLIS-------- 363 (604)
T ss_pred hhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHH--------
Confidence 56666666667777777777766 677889999999999999999999999999999999999777655432
Q ss_pred hHHHHHHHHHHHHHhhcchhHHHHH-HHhhccHHHHHHHHHHHHhccCCCccceeeecCCcHHHHHHHHhhcchhhhhhH
Q 005282 417 KDCVARTLKRLEEKVHGRVLNHLLY-LLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREES 495 (704)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a 495 (704)
.|.+ --..++.+++.+++.+|.|+.-+..++..+...|..+.++.++....|+++..-
T Consensus 364 ---------------------~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkl 422 (604)
T KOG4500|consen 364 ---------------------CLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKL 422 (604)
T ss_pred ---------------------HHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHH
Confidence 1111 112467889999999999999999999999999999999999998888887776
Q ss_pred HHHHHHHhh
Q 005282 496 SVALYKLAT 504 (704)
Q Consensus 496 ~~~L~~L~~ 504 (704)
...+..+.-
T Consensus 423 lgTlrM~~d 431 (604)
T KOG4500|consen 423 LGTLRMIRD 431 (604)
T ss_pred HHHHHHHHh
Confidence 666655443
No 30
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.68 E-value=3.5e-14 Score=151.31 Aligned_cols=362 Identities=20% Similarity=0.203 Sum_probs=282.0
Q ss_pred HHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHH
Q 005282 96 ALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAI 175 (704)
Q Consensus 96 ~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L 175 (704)
.+...|...+. +....++.+|..+......... ..+..+.|...|.++++ .++..+++.+
T Consensus 42 ~lf~~L~~~~~----------e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h~~~--------~Vr~l~l~~l 101 (503)
T PF10508_consen 42 VLFDCLNTSNR----------EQVELICDILKRLLSALSPDSL--LPQYQPFLQRGLTHPSP--------KVRRLALKQL 101 (503)
T ss_pred HHHHHHhhcCh----------HHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcCCCH--------HHHHHHHHHH
Confidence 37777887654 6677888999998854444333 45667888888888776 9999999999
Q ss_pred HHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHH
Q 005282 176 TNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEA 255 (704)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a 255 (704)
.++..++......+...+.++.++.++.+++..+...|+.+|..++. .+...+.+...+.+..|..++..+++.+|..+
T Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~-~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv 180 (503)
T PF10508_consen 102 GRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLAS-HPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRV 180 (503)
T ss_pred HHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC-CchhHHHHhCcchHHHHHHHHhccCHHHHHHH
Confidence 99998777777888889999999999999999999999999999996 56666678788889999999988899999999
Q ss_pred HHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCC--CH
Q 005282 256 VGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSP--DS 333 (704)
Q Consensus 256 ~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~ 333 (704)
..++.+++..+++....+...|+++.++..+.++|.-++..++..|..++. .+.....+.+.|+++.|..++.+. ++
T Consensus 181 ~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp 259 (503)
T PF10508_consen 181 YELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDP 259 (503)
T ss_pred HHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCC
Confidence 999999999989999999999999999999999888889999999999997 778888899999999999999643 22
Q ss_pred ---H-HHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHH-HhhCC-ccccc
Q 005282 334 ---Q-LKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADL-VRVGG-VQKLQ 407 (704)
Q Consensus 334 ---~-v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l-~~~g~-i~~l~ 407 (704)
. .........++++...+....-.-...+..+.+++.+.++..+..|..+++.++++.+.+..+ ...|. ++
T Consensus 260 ~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~--- 336 (503)
T PF10508_consen 260 RLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMK--- 336 (503)
T ss_pred cccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHH---
Confidence 1 223344677777775333322222344556677888999999999999999999988888877 33221 11
Q ss_pred ccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCcc----------ceee--ecCC
Q 005282 408 DGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDC----------KTIF--IDNN 475 (704)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~----------~~~l--~~~~ 475 (704)
.++..+.....++..+++..+..++.++-..... +..+ ...+
T Consensus 337 --------------------------~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~ 390 (503)
T PF10508_consen 337 --------------------------HVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGS 390 (503)
T ss_pred --------------------------HHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCC
Confidence 1344555666777788999999999888221111 1111 1122
Q ss_pred cHH-HHHHHHhhcchhhhhhHHHHHHHHhhhcCC
Q 005282 476 GLE-LLLGLLESTSVKQREESSVALYKLATKATS 508 (704)
Q Consensus 476 ~i~-~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~ 508 (704)
-.. .+..+++.+.|++|.++...|..|+.+++.
T Consensus 391 ~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg 424 (503)
T PF10508_consen 391 PLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWG 424 (503)
T ss_pred chHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHH
Confidence 333 677778788899999999999999998754
No 31
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.62 E-value=1.6e-15 Score=122.74 Aligned_cols=90 Identities=38% Similarity=0.693 Sum_probs=85.7
Q ss_pred cEEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhcCccccChhhHHHHHHHHhhh
Q 005282 537 DVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVDIAQDLLRAADQY 616 (704)
Q Consensus 537 d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~ll~~A~~~ 616 (704)
|+++.++|+.|++||.+|+++|+||+.||.+++.+.....+.+++.+++.|+.+++|+|++.+.++.+++.+++.+|++|
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~~~ 80 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEENVEELLELADYL 80 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCHHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999888778899999999999999999999999999999999999999999
Q ss_pred ChHhHHHHHH
Q 005282 617 LLEGLKRLCE 626 (704)
Q Consensus 617 ~~~~l~~~c~ 626 (704)
+++.+.+.|+
T Consensus 81 ~~~~l~~~c~ 90 (90)
T smart00225 81 QIPGLVELCE 90 (90)
T ss_pred CcHHHHhhhC
Confidence 9999999884
No 32
>PRK09687 putative lyase; Provisional
Probab=99.54 E-value=7.5e-13 Score=129.23 Aligned_cols=254 Identities=19% Similarity=0.165 Sum_probs=197.8
Q ss_pred CcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC
Q 005282 144 ALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFK 223 (704)
Q Consensus 144 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 223 (704)
-++.|..+|.+.+. .++..++++|..+-. ...++.+..++.++++.+|..++++|+.+..
T Consensus 24 ~~~~L~~~L~d~d~--------~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~- 83 (280)
T PRK09687 24 NDDELFRLLDDHNS--------LKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGM- 83 (280)
T ss_pred cHHHHHHHHhCCCH--------HHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-
Confidence 56788899987765 899999999988752 2346778889999999999999999999974
Q ss_pred CchhhHHhHhcCChHHHHHh-hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHH
Q 005282 224 NDENKKLIVECNALPTLVLM-LRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLG 302 (704)
Q Consensus 224 ~~~~~~~~~~~~~i~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~ 302 (704)
.+.. ....++.|..+ ++++++.|+..++.+|+++....... ...++..+...+.++++.++..++.+|+
T Consensus 84 ~~~~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~~~~VR~~a~~aLg 153 (280)
T PRK09687 84 AKRC-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDKSTNVRFAVAFALS 153 (280)
T ss_pred Cccc-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCCCHHHHHHHHHHHh
Confidence 2211 12346777766 67889999999999999996432111 1224566777788889999999999998
Q ss_pred HHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHH
Q 005282 303 QFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAF 382 (704)
Q Consensus 303 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~ 382 (704)
.+.. ...++.|+.++.++++.++..|+.+|+.+....+ ..++.|+.++.+.++.|+..|+.
T Consensus 154 ~~~~-----------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~--------~~~~~L~~~L~D~~~~VR~~A~~ 214 (280)
T PRK09687 154 VIND-----------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP--------DIREAFVAMLQDKNEEIRIEAII 214 (280)
T ss_pred ccCC-----------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH--------HHHHHHHHHhcCCChHHHHHHHH
Confidence 7631 2368999999999999999999999999833222 35577999999999999999999
Q ss_pred HHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhcc
Q 005282 383 ALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLC 462 (704)
Q Consensus 383 ~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~ 462 (704)
+|+.+-. + ..++.|+..+..++ ++..++.+|+.+.
T Consensus 215 aLg~~~~-~------------------------------------------~av~~Li~~L~~~~--~~~~a~~ALg~ig 249 (280)
T PRK09687 215 GLALRKD-K------------------------------------------RVLSVLIKELKKGT--VGDLIIEAAGELG 249 (280)
T ss_pred HHHccCC-h------------------------------------------hHHHHHHHHHcCCc--hHHHHHHHHHhcC
Confidence 9998732 1 24667777877765 6778999999993
Q ss_pred CCCccceeeecCCcHHHHHHHHh-hcchhhhhhHHHHHHH
Q 005282 463 APDDCKTIFIDNNGLELLLGLLE-STSVKQREESSVALYK 501 (704)
Q Consensus 463 ~~~~~~~~l~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~ 501 (704)
. ..+++.|.+++. +.++.++..|.++|..
T Consensus 250 ~----------~~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 250 D----------KTLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred C----------HhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 3 357999999997 7899999999888754
No 33
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.51 E-value=5.5e-12 Score=144.59 Aligned_cols=278 Identities=23% Similarity=0.215 Sum_probs=217.4
Q ss_pred hCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHH
Q 005282 90 DNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIR 169 (704)
Q Consensus 90 ~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~ 169 (704)
+...++.|++.|+++++ .||..|+..|+.+.. .+.++.|...|++.+. .++.
T Consensus 619 ~~~~~~~L~~~L~D~d~----------~VR~~Av~~L~~~~~----------~~~~~~L~~aL~D~d~--------~VR~ 670 (897)
T PRK13800 619 DAPSVAELAPYLADPDP----------GVRRTAVAVLTETTP----------PGFGPALVAALGDGAA--------AVRR 670 (897)
T ss_pred cchhHHHHHHHhcCCCH----------HHHHHHHHHHhhhcc----------hhHHHHHHHHHcCCCH--------HHHH
Confidence 44567899999988765 999999999998762 3467888999977665 8999
Q ss_pred HHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCH
Q 005282 170 RAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDA 249 (704)
Q Consensus 170 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~ 249 (704)
.|+.+|..+....+ ..+.|...|.++++.++..++.+|..+..+ -...++..|.++++
T Consensus 671 ~Aa~aL~~l~~~~~----------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~------------~~~~l~~~L~D~d~ 728 (897)
T PRK13800 671 AAAEGLRELVEVLP----------PAPALRDHLGSPDPVVRAAALDVLRALRAG------------DAALFAAALGDPDH 728 (897)
T ss_pred HHHHHHHHHHhccC----------chHHHHHHhcCCCHHHHHHHHHHHHhhccC------------CHHHHHHHhcCCCH
Confidence 99999988753211 135678888899999999999999887531 13457788899999
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhC
Q 005282 250 SVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQ 329 (704)
Q Consensus 250 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~ 329 (704)
.+|..|+.+|+.+-. .+.|..++.++++.++..++.+|..+.... ...++.|..+++
T Consensus 729 ~VR~~Av~aL~~~~~--------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~---------~~~~~~L~~ll~ 785 (897)
T PRK13800 729 RVRIEAVRALVSVDD--------------VESVAGAATDENREVRIAVAKGLATLGAGG---------APAGDAVRALTG 785 (897)
T ss_pred HHHHHHHHHHhcccC--------------cHHHHHHhcCCCHHHHHHHHHHHHHhcccc---------chhHHHHHHHhc
Confidence 999999999987621 234667889999999999999999885321 123788889999
Q ss_pred CCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHHHhhCCccccccc
Q 005282 330 SPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDG 409 (704)
Q Consensus 330 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~ 409 (704)
++++.+|..|+.+|+++..... .+..++..+.+.++.||..|+.+|..+...
T Consensus 786 D~d~~VR~aA~~aLg~~g~~~~---------~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~------------------- 837 (897)
T PRK13800 786 DPDPLVRAAALAALAELGCPPD---------DVAAATAALRASAWQVRQGAARALAGAAAD------------------- 837 (897)
T ss_pred CCCHHHHHHHHHHHHhcCCcch---------hHHHHHHHhcCCChHHHHHHHHHHHhcccc-------------------
Confidence 9999999999999988854321 224578888889999999999999877321
Q ss_pred ccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCccceeeecCCcHHHHHHHHhhcch
Q 005282 410 EFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSV 489 (704)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~ 489 (704)
..++.|+.++.++++.|+..|+++|+.+. ......+.|...+.+.++
T Consensus 838 ------------------------~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---------~~~~a~~~L~~al~D~d~ 884 (897)
T PRK13800 838 ------------------------VAVPALVEALTDPHLDVRKAAVLALTRWP---------GDPAARDALTTALTDSDA 884 (897)
T ss_pred ------------------------chHHHHHHHhcCCCHHHHHHHHHHHhccC---------CCHHHHHHHHHHHhCCCH
Confidence 13456888999999999999999999971 123467889999999999
Q ss_pred hhhhhHHHHHHH
Q 005282 490 KQREESSVALYK 501 (704)
Q Consensus 490 ~~~~~a~~~L~~ 501 (704)
+||..|+.+|..
T Consensus 885 ~Vr~~A~~aL~~ 896 (897)
T PRK13800 885 DVRAYARRALAH 896 (897)
T ss_pred HHHHHHHHHHhh
Confidence 999999998863
No 34
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.50 E-value=1.7e-12 Score=123.50 Aligned_cols=226 Identities=22% Similarity=0.322 Sum_probs=177.4
Q ss_pred HhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHH
Q 005282 89 VDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVI 168 (704)
Q Consensus 89 ~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~ 168 (704)
.+.+-++.|+.+|+... |+.+++.|..++++.+..+.+++.+.+.|+++.+..+|.+++. .++
T Consensus 9 l~~~~l~~Ll~lL~~t~---------dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~--------~vr 71 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTE---------DPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNP--------SVR 71 (254)
T ss_pred cCHHHHHHHHHHHhcCC---------ChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCCh--------HHH
Confidence 46677899999999875 4699999999999999999999999999999999999999876 999
Q ss_pred HHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcC--CCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcC
Q 005282 169 RRAADAITNLAHENANIKTRVRVEDGIPPLVELLKF--VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRS 246 (704)
Q Consensus 169 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~ 246 (704)
..|+++|.|++. +.+.+..+- ..++.+++...+ -+..++..++++|.+++. .++.+..+.. .++.++.+|.+
T Consensus 72 ~~AL~aL~Nls~-~~en~~~Ik--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv-~~~~~~~l~~--~i~~ll~LL~~ 145 (254)
T PF04826_consen 72 EKALNALNNLSV-NDENQEQIK--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTV-TNDYHHMLAN--YIPDLLSLLSS 145 (254)
T ss_pred HHHHHHHHhcCC-ChhhHHHHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCC-CcchhhhHHh--hHHHHHHHHHc
Confidence 999999999996 444555443 346666665443 367899999999999986 5566666644 69999999999
Q ss_pred CCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCC-ChhHHHHHHHHHHHHhccCCcchHH-----------
Q 005282 247 EDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSS-CSESKREAALLLGQFAAADSNSKVH----------- 314 (704)
Q Consensus 247 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~----------- 314 (704)
++..++..++++|.||+.+ +.....++..+++..++.++... +.++...++..+.|+..+-+.....
T Consensus 146 G~~~~k~~vLk~L~nLS~n-p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L 224 (254)
T PF04826_consen 146 GSEKTKVQVLKVLVNLSEN-PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSL 224 (254)
T ss_pred CChHHHHHHHHHHHHhccC-HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhH
Confidence 9999999999999999966 77788888889999999999765 5677889999999986433222111
Q ss_pred ---HHhcC-ChHHHHHhhCCCCHHHHHH
Q 005282 315 ---IVQRG-AVRPLIEMLQSPDSQLKEM 338 (704)
Q Consensus 315 ---~~~~~-~i~~L~~ll~~~~~~v~~~ 338 (704)
+.+.+ ..+.|..+..++|++|+..
T Consensus 225 ~~~~~e~~~~~~~l~~l~~h~d~ev~~~ 252 (254)
T PF04826_consen 225 FSLFGESSQLAKKLQALANHPDPEVKEQ 252 (254)
T ss_pred HHHHccHHHHHHHHHHHHcCCCHHHhhh
Confidence 11111 3455555556666666654
No 35
>PRK09687 putative lyase; Provisional
Probab=99.48 E-value=3.7e-12 Score=124.35 Aligned_cols=255 Identities=16% Similarity=0.091 Sum_probs=196.5
Q ss_pred CChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHH
Q 005282 92 GAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRA 171 (704)
Q Consensus 92 g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a 171 (704)
--++.|..+|.+.+. .+|..|+++|..+.. ..+++.+..++.+.+. .++..+
T Consensus 23 ~~~~~L~~~L~d~d~----------~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~--------~vR~~A 74 (280)
T PRK09687 23 LNDDELFRLLDDHNS----------LKRISSIRVLQLRGG----------QDVFRLAIELCSSKNP--------IERDIG 74 (280)
T ss_pred ccHHHHHHHHhCCCH----------HHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCH--------HHHHHH
Confidence 457889999988866 999999999998873 2345677787776654 999999
Q ss_pred HHHHHHhhhcChhhhhhhhccCCcHHHHHH-hcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHH
Q 005282 172 ADAITNLAHENANIKTRVRVEDGIPPLVEL-LKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDAS 250 (704)
Q Consensus 172 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l-l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~ 250 (704)
+++|+.+-..... ....++.|..+ ++++++.|+..|+.+|++++...... ....+..+...+.++++.
T Consensus 75 ~~aLg~lg~~~~~------~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~~~~ 143 (280)
T PRK09687 75 ADILSQLGMAKRC------QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDKSTN 143 (280)
T ss_pred HHHHHhcCCCccc------hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCCCHH
Confidence 9999998642211 12356777777 67889999999999999997422111 112355677778889999
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCC
Q 005282 251 VHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQS 330 (704)
Q Consensus 251 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~ 330 (704)
||..++++|+.+.. ...++.|+.++.++++.++..|+.+|+.+...+ ..+++.|+..+.+
T Consensus 144 VR~~a~~aLg~~~~-----------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~---------~~~~~~L~~~L~D 203 (280)
T PRK09687 144 VRFAVAFALSVIND-----------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN---------PDIREAFVAMLQD 203 (280)
T ss_pred HHHHHHHHHhccCC-----------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC---------HHHHHHHHHHhcC
Confidence 99999999987741 135889999999999999999999999983212 2367889999999
Q ss_pred CCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHHHhhCCcccccccc
Q 005282 331 PDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGE 410 (704)
Q Consensus 331 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~ 410 (704)
.+..++..|.++|+.+.. ...++.|++.+.+++ ++..++.+|+++...
T Consensus 204 ~~~~VR~~A~~aLg~~~~----------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-------------------- 251 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKD----------KRVLSVLIKELKKGT--VGDLIIEAAGELGDK-------------------- 251 (280)
T ss_pred CChHHHHHHHHHHHccCC----------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH--------------------
Confidence 999999999999988543 247789999998765 678888999988431
Q ss_pred cccccchHHHHHHHHHHHHHhhcchhHHHHHHHh-hccHHHHHHHHHHHHh
Q 005282 411 FTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLR-VADRAVKRRVTLALAH 460 (704)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~ 460 (704)
..++.|..++. ++|+.++..+.++|..
T Consensus 252 -----------------------~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 252 -----------------------TLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred -----------------------hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 14567778885 7899999999888754
No 36
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=3.5e-11 Score=117.89 Aligned_cols=402 Identities=15% Similarity=0.145 Sum_probs=291.0
Q ss_pred hhHHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHH
Q 005282 40 QQDLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVE 119 (704)
Q Consensus 40 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~ 119 (704)
++.+...+..+-..+..+... +. ...+.|+..|.|++.+-..-..+...+++..|+..|+..+. ++.
T Consensus 255 netLk~e~dr~~kklk~~~~K--Qe-qLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~----------~Ll 321 (791)
T KOG1222|consen 255 NETLKEEIDRLNKKLKTAIRK--QE-QLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNS----------SLL 321 (791)
T ss_pred hhhHHHHHHHHHHHHHHHHHH--HH-HHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccch----------HHH
Confidence 444445555555555444321 22 24567888999999987666778888999999999999987 899
Q ss_pred HHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHH
Q 005282 120 KECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLV 199 (704)
Q Consensus 120 ~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 199 (704)
......|-+|+-..+++..+.+.|.+..|++++...++ +++...+..+.|++. +...+..++..|.+|.+.
T Consensus 322 ~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~--------dL~~~tl~LlfNlSF-D~glr~KMv~~GllP~l~ 392 (791)
T KOG1222|consen 322 TLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHP--------DLRKATLMLLFNLSF-DSGLRPKMVNGGLLPHLA 392 (791)
T ss_pred HHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCH--------HHHHHHHHHhhhccc-cccccHHHhhccchHHHH
Confidence 99999999999767888899999999999999988876 999999999999997 456788899999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhhHHHHHHcCC
Q 005282 200 ELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRS-EDASVHFEAVGVIGNLVHSSPSIKKEVILAGA 278 (704)
Q Consensus 200 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 278 (704)
.++.+++. ...|+..++.++. ++..+..+.....++.+++.+-+ .+.+|-...+..--|++.+ ....+.+..-.+
T Consensus 393 ~ll~~d~~--~~iA~~~lYh~S~-dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~ln-kRNaQlvceGqg 468 (791)
T KOG1222|consen 393 SLLDSDTK--HGIALNMLYHLSC-DDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLN-KRNAQLVCEGQG 468 (791)
T ss_pred HHhCCccc--chhhhhhhhhhcc-CcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhc-cccceEEecCcc
Confidence 99987653 3347778888886 78888888888899999986654 4555555555555677755 445555666667
Q ss_pred HHHHHHHh-cCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCC-CHHHHHHHHHHHHHhhcCCchhhhH
Q 005282 279 LQPVIGLL-SSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSP-DSQLKEMSAFALGRLAQDTHNQAGI 356 (704)
Q Consensus 279 l~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~ 356 (704)
+..|++.. ...+.- ....+.|++.++...+..+++ .+..|...++.. +......+..+|+|+....-.-..+
T Consensus 469 L~~LM~ra~k~~D~l----LmK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~i 542 (791)
T KOG1222|consen 469 LDLLMERAIKSRDLL----LMKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKI 542 (791)
T ss_pred hHHHHHHHhcccchH----HHHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHH
Confidence 88888554 343332 345677887766555555554 366677777654 4456667888999988766555555
Q ss_pred Hhh-CChHHHHHhhcCC--ChhHHHHHHHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhc
Q 005282 357 AQD-GGILPLLKLLDSK--NGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHG 433 (704)
Q Consensus 357 ~~~-~~~~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (704)
.+. ..+|.+-+.|..+ ..+++-..+-+++.++.+..+...+..+|.++.+
T Consensus 543 lq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tl--------------------------- 595 (791)
T KOG1222|consen 543 LQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTL--------------------------- 595 (791)
T ss_pred HhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHH---------------------------
Confidence 554 7778787777553 4457777788888888888888888877776554
Q ss_pred chhHHHHHHHhh--ccHHHHHHHHHHHHhccCCCccceeeecC-CcHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282 434 RVLNHLLYLLRV--ADRAVKRRVTLALAHLCAPDDCKTIFIDN-NGLELLLGLLESTSVKQREESSVALYKLATKA 506 (704)
Q Consensus 434 ~~~~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~l~~~-~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 506 (704)
+.++.. .+.+.......+...+-.++..+..+.+. ..-..|+.++.+.+..+|+.+-.+|--++.+.
T Consensus 596 ------ieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d 665 (791)
T KOG1222|consen 596 ------IELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHD 665 (791)
T ss_pred ------HHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhh
Confidence 444433 34455555555555554445445444444 44456899999999999999999998887765
No 37
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=3.7e-11 Score=117.70 Aligned_cols=355 Identities=17% Similarity=0.188 Sum_probs=265.3
Q ss_pred HHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHH
Q 005282 47 IRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFAL 126 (704)
Q Consensus 47 ~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L 126 (704)
-..++.+|+..+..++.+. ..-...-|..++--.++...+.+.|+++.|+.+....++ +++...+..+
T Consensus 302 rkniV~mLVKaLdr~n~~L--l~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~----------dL~~~tl~Ll 369 (791)
T KOG1222|consen 302 RKNIVAMLVKALDRSNSSL--LTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHP----------DLRKATLMLL 369 (791)
T ss_pred HHhHHHHHHHHHcccchHH--HHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCH----------HHHHHHHHHh
Confidence 4456777777776554333 344455666666666777888899999999999999976 9999999999
Q ss_pred HhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc-CC
Q 005282 127 GLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLK-FV 205 (704)
Q Consensus 127 ~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~ 205 (704)
.|++-+...|..++..|.+|.+..++.+... ...|+..|..++- ++..+..+...++++.+++.+- ..
T Consensus 370 fNlSFD~glr~KMv~~GllP~l~~ll~~d~~----------~~iA~~~lYh~S~-dD~~K~MfayTdci~~lmk~v~~~~ 438 (791)
T KOG1222|consen 370 FNLSFDSGLRPKMVNGGLLPHLASLLDSDTK----------HGIALNMLYHLSC-DDDAKAMFAYTDCIKLLMKDVLSGT 438 (791)
T ss_pred hhccccccccHHHhhccchHHHHHHhCCccc----------chhhhhhhhhhcc-CcHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999888999999999999999999987654 2357778888875 6778888999999999987655 45
Q ss_pred CHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHh-hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHH
Q 005282 206 DVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLM-LRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIG 284 (704)
Q Consensus 206 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 284 (704)
+.++-...+....|+|. +..+.+.+++..++..|++. +++.++-. ...+.|++++.......+++ .+.-|..
T Consensus 439 ~~~vdl~lia~ciNl~l-nkRNaQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn~Fid--yvgdLa~ 511 (791)
T KOG1222|consen 439 GSEVDLALIALCINLCL-NKRNAQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQNMFID--YVGDLAG 511 (791)
T ss_pred CceecHHHHHHHHHHHh-ccccceEEecCcchHHHHHHHhcccchHH----HHHHHHhhhccchHHHHHHH--HHHHHHH
Confidence 56666667777788886 77888888888899998875 44444432 45678888775444444443 3555666
Q ss_pred HhcCCCh-hHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhcCCchhhhHHhhCC
Q 005282 285 LLSSSCS-ESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSP--DSQLKEMSAFALGRLAQDTHNQAGIAQDGG 361 (704)
Q Consensus 285 ll~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 361 (704)
.+...+. +...+|..+++|+...+-+-...+-..+++|.+-..|+.+ ..+++-...-+++.++........+...+.
T Consensus 512 i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~ 591 (791)
T KOG1222|consen 512 IAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKL 591 (791)
T ss_pred HhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCcccc
Confidence 6655444 4577899999999876666666666779999999998753 445666777788888887777777788899
Q ss_pred hHHHHHhhcC--CChhHHHHHHHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHH
Q 005282 362 ILPLLKLLDS--KNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHL 439 (704)
Q Consensus 362 ~~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 439 (704)
++.++++|+. .+.+...........+..++..++.+.++-... ..+
T Consensus 592 i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~--------------------------------Ayl 639 (791)
T KOG1222|consen 592 IDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETALG--------------------------------AYL 639 (791)
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhccch--------------------------------HHH
Confidence 9999999976 355666666666666666666667776643322 268
Q ss_pred HHHHhhccHHHHHHHHHHHHhccC
Q 005282 440 LYLLRVADRAVKRRVTLALAHLCA 463 (704)
Q Consensus 440 ~~ll~~~~~~v~~~a~~~L~~l~~ 463 (704)
+.++++.+.+++..|=.+|--++.
T Consensus 640 IDLMHDkN~eiRkVCDn~LdIiae 663 (791)
T KOG1222|consen 640 IDLMHDKNAEIRKVCDNALDIIAE 663 (791)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHH
Confidence 899999999999988887776644
No 38
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.42 E-value=4.6e-11 Score=113.78 Aligned_cols=181 Identities=20% Similarity=0.190 Sum_probs=154.1
Q ss_pred hhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHc
Q 005282 63 TDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDT 142 (704)
Q Consensus 63 ~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~ 142 (704)
.++.++..++.++.+.+..+..+..+.+.|+++.+..+|.++++ .++..|+++|.|++.+.+++..+..
T Consensus 25 ~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~----------~vr~~AL~aL~Nls~~~en~~~Ik~- 93 (254)
T PF04826_consen 25 EDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNP----------SVREKALNALNNLSVNDENQEQIKM- 93 (254)
T ss_pred CChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCCh----------HHHHHHHHHHHhcCCChhhHHHHHH-
Confidence 56678999999999999999999999999999999999999876 9999999999999988888887653
Q ss_pred CCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhcc
Q 005282 143 GALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAF 222 (704)
Q Consensus 143 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 222 (704)
.++.+++.+.+...++ +++..++.+|.+++..+ .....+ .+.++.++.+|.+++..++..++.+|.+|+.
T Consensus 94 -~i~~Vc~~~~s~~lns------~~Q~agLrlL~nLtv~~-~~~~~l--~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 94 -YIPQVCEETVSSPLNS------EVQLAGLRLLTNLTVTN-DYHHML--ANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred -HHHHHHHHHhcCCCCC------HHHHHHHHHHHccCCCc-chhhhH--HhhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 4777777666543322 88999999999998643 334444 3579999999999999999999999999996
Q ss_pred CCchhhHHhHhcCChHHHHHhhcCC-CHHHHHHHHHHHHHHhcC
Q 005282 223 KNDENKKLIVECNALPTLVLMLRSE-DASVHFEAVGVIGNLVHS 265 (704)
Q Consensus 223 ~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~ 265 (704)
++.....+...++++.++.++... +.++...++..+.||..+
T Consensus 164 -np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 164 -NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred -CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 888888888889999999999864 788999999999999743
No 39
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.39 E-value=4e-11 Score=122.50 Aligned_cols=390 Identities=14% Similarity=0.144 Sum_probs=274.0
Q ss_pred HHHHHHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcCCc
Q 005282 68 AKTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTGAL 145 (704)
Q Consensus 68 ~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l 145 (704)
...+..-..+.+- .+.....+++.|+++.|+.+++..+. .++.+.+.+.+++.+. +.......+.+.+.+
T Consensus 26 lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~--------s~~~k~~~~~llns~f~~eqd~v~svL~~~~l 97 (678)
T KOG1293|consen 26 LVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDG--------STELKNGFAVLLNSLFLGEQDKVDSVLRIIEL 97 (678)
T ss_pred HHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCC--------chhhhhhHHHHHHhHHhhccchHHHHHHHhhH
Confidence 4566777777655 45555678899999999999999887 4578888888888888 788888999999999
Q ss_pred HHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhh--hhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC
Q 005282 146 PHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTR--VRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFK 223 (704)
Q Consensus 146 ~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 223 (704)
+.|++++.+.+. ..+++.++.++.++...++..... .....+++.+..++..+.......-+....+++.
T Consensus 98 l~Ll~LLs~sD~-------~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~- 169 (678)
T KOG1293|consen 98 LKLLQLLSESDS-------LNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSS- 169 (678)
T ss_pred HHHHHHhcCcch-------HhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccc-
Confidence 999999998872 188999999999998655443222 2223344555544443555555566666666664
Q ss_pred CchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHH---HHhcCChhhHHHHH----HcCCHH--HHHHHhcCCChhHH
Q 005282 224 NDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIG---NLVHSSPSIKKEVI----LAGALQ--PVIGLLSSSCSESK 294 (704)
Q Consensus 224 ~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~---~l~~~~~~~~~~~~----~~~~l~--~L~~ll~~~~~~~~ 294 (704)
.++.+..+.+.|+.+.+.-++.......|..|+.++. ++..+++.....+. ..|+.+ .+..++++++...+
T Consensus 170 ~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~ 249 (678)
T KOG1293|consen 170 TKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSER 249 (678)
T ss_pred cchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHH
Confidence 6788888889999999988888888999999999999 88777776555444 345555 45577777777777
Q ss_pred HHHHHHHHHHhccCCcchH---------------------------------------------------HHHhcCChHH
Q 005282 295 REAALLLGQFAAADSNSKV---------------------------------------------------HIVQRGAVRP 323 (704)
Q Consensus 295 ~~a~~~L~~l~~~~~~~~~---------------------------------------------------~~~~~~~i~~ 323 (704)
..++.++.++...+.+... ...+...++.
T Consensus 250 l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~ 329 (678)
T KOG1293|consen 250 LRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKT 329 (678)
T ss_pred HHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhh
Confidence 7777777666543300000 0001111122
Q ss_pred HHHhhC----------------------------------------------------CCCHHHHHHHHHHHHHhhcCCc
Q 005282 324 LIEMLQ----------------------------------------------------SPDSQLKEMSAFALGRLAQDTH 351 (704)
Q Consensus 324 L~~ll~----------------------------------------------------~~~~~v~~~a~~~L~~l~~~~~ 351 (704)
+.+++. ..|...+.+|+..+.+++..-.
T Consensus 330 ~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~ 409 (678)
T KOG1293|consen 330 TTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVS 409 (678)
T ss_pred HHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHH
Confidence 222211 1122344455555555543321
Q ss_pred -hhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHccc-CCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHH
Q 005282 352 -NQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD-NEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEE 429 (704)
Q Consensus 352 -~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~ 429 (704)
-+..+....+.++++++++.++..++..+.++|+|+.. ...-+..+++.|+++.
T Consensus 410 aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~------------------------ 465 (678)
T KOG1293|consen 410 ALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDI------------------------ 465 (678)
T ss_pred HHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHH------------------------
Confidence 11223445678899999999999999999999999985 5666778888887654
Q ss_pred HhhcchhHHHHHHHhhccHHHHHHHHHHHHhccC--CCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282 430 KVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCA--PDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKA 506 (704)
Q Consensus 430 ~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 506 (704)
+..++.+.++.++..+.|+|.++.- .+..+..+...=+...|..+..++++.||+.+...|.||...+
T Consensus 466 ---------l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~ 535 (678)
T KOG1293|consen 466 ---------LESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNS 535 (678)
T ss_pred ---------HHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCc
Confidence 6678888999999999999999943 3334444444456677888999999999999999999998765
No 40
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=1.4e-08 Score=111.14 Aligned_cols=336 Identities=18% Similarity=0.167 Sum_probs=224.1
Q ss_pred chhhHHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCch
Q 005282 38 ATQQDLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEH 116 (704)
Q Consensus 38 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~ 116 (704)
+....+..-+|.++..+......++++ ....++..|..+.. .|...+... ..++..-+++..+..- |.
T Consensus 195 ~~~~~~~~llP~~l~vl~~~i~~~d~~--~a~~~l~~l~El~e~~pk~l~~~l-~~ii~~~l~Ia~n~~l--------~~ 263 (1075)
T KOG2171|consen 195 SEVDKFRDLLPSLLNVLQEVIQDGDDD--AAKSALEALIELLESEPKLLRPHL-SQIIQFSLEIAKNKEL--------EN 263 (1075)
T ss_pred HHHHHHHHHhHHHHHHhHhhhhccchH--HHHHHHHHHHHHHhhchHHHHHHH-HHHHHHHHHHhhcccc--------cH
Confidence 445667777788888887777655543 35677888888877 344433321 2456777777777765 78
Q ss_pred HHHHHHHHHHHhhc-CChhhHHHHHH--cCCcHHHHHHHhhccCCC--------CCcchhHHHHHHHHHHHHhhhcChhh
Q 005282 117 EVEKECAFALGLLA-VKPEHQQIIVD--TGALPHLVSLLKQYKNGG--------NSRALSGVIRRAADAITNLAHENANI 185 (704)
Q Consensus 117 ~v~~~a~~~L~~l~-~~~~~~~~~~~--~g~l~~L~~lL~~~~~~~--------~~~~~~~~~~~a~~~L~~l~~~~~~~ 185 (704)
.+|..|+.+|..++ .-|...+.... .-.++.++.++..-..+. ..+....--..|..+|..++.+-+..
T Consensus 264 ~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~ 343 (1075)
T KOG2171|consen 264 SIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGK 343 (1075)
T ss_pred HHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChh
Confidence 99999999999999 54444333222 234566666665433320 00001124556777777777433221
Q ss_pred hhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 005282 186 KTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHS 265 (704)
Q Consensus 186 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 265 (704)
.+-.-.++.+-.++.+.++.-|.+++.+|..++.|..+.-.... ..+++.++..|+++++.||..|+.+++.++.+
T Consensus 344 ---~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~std 419 (1075)
T KOG2171|consen 344 ---QVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQMSTD 419 (1075)
T ss_pred ---hehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhh
Confidence 23334456677788899999999999999999987766554432 34788899999999999999999999999976
Q ss_pred ChhhHHHHHHcCCHHHHHHHhcCC-ChhHHHHHHHHHHHHhccCCcchHHHHhcCChH-HHHHhhCCCCHHHHHHHHHHH
Q 005282 266 SPSIKKEVILAGALQPVIGLLSSS-CSESKREAALLLGQFAAADSNSKVHIVQRGAVR-PLIEMLQSPDSQLKEMSAFAL 343 (704)
Q Consensus 266 ~~~~~~~~~~~~~l~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-~L~~ll~~~~~~v~~~a~~~L 343 (704)
-....+.-....+++.|+..+.+. ++.++..|+.++.|++.........-+-.++++ .+..++.++.+.+++.+..+|
T Consensus 420 l~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaI 499 (1075)
T KOG2171|consen 420 LQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAI 499 (1075)
T ss_pred hcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 544445455567788888888765 568899999999999865554433333345666 444455678899999999999
Q ss_pred HHhhcCCchhhhHHhhCChHHHHHhhcCCC-h---hHHHHHHHHHHHcc
Q 005282 344 GRLAQDTHNQAGIAQDGGILPLLKLLDSKN-G---SLQHNAAFALYGLA 388 (704)
Q Consensus 344 ~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~-~---~v~~~a~~~L~~l~ 388 (704)
+..+...+..-.-.-...++.|.+.|+..+ . .+|.....++.-++
T Consensus 500 asvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~ 548 (1075)
T KOG2171|consen 500 ASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIA 548 (1075)
T ss_pred HHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHH
Confidence 999976554433333445666777776544 3 45555445554443
No 41
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.36 E-value=2.8e-10 Score=130.67 Aligned_cols=273 Identities=22% Similarity=0.174 Sum_probs=208.0
Q ss_pred HHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcC
Q 005282 52 DILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAV 131 (704)
Q Consensus 52 ~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~ 131 (704)
+.|...+. ++++.++..|+..|..+. ..+.++.|+.+|.+++. .||..|+.+|..+..
T Consensus 624 ~~L~~~L~--D~d~~VR~~Av~~L~~~~----------~~~~~~~L~~aL~D~d~----------~VR~~Aa~aL~~l~~ 681 (897)
T PRK13800 624 AELAPYLA--DPDPGVRRTAVAVLTETT----------PPGFGPALVAALGDGAA----------AVRRAAAEGLRELVE 681 (897)
T ss_pred HHHHHHhc--CCCHHHHHHHHHHHhhhc----------chhHHHHHHHHHcCCCH----------HHHHHHHHHHHHHHh
Confidence 34444443 355667888888888764 23457999999988765 999999999998862
Q ss_pred ChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHH
Q 005282 132 KPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQR 211 (704)
Q Consensus 132 ~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~ 211 (704)
.. ...+.|...|.+.+. .++..++.+|..+...+ ...++..|.++++.+|.
T Consensus 682 ~~---------~~~~~L~~~L~~~d~--------~VR~~A~~aL~~~~~~~------------~~~l~~~L~D~d~~VR~ 732 (897)
T PRK13800 682 VL---------PPAPALRDHLGSPDP--------VVRAAALDVLRALRAGD------------AALFAAALGDPDHRVRI 732 (897)
T ss_pred cc---------CchHHHHHHhcCCCH--------HHHHHHHHHHHhhccCC------------HHHHHHHhcCCCHHHHH
Confidence 21 123567777776443 89999999998875221 34578899999999999
Q ss_pred HHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCCh
Q 005282 212 AAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCS 291 (704)
Q Consensus 212 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~ 291 (704)
.|+.+|..+.. .+.|..++.++++.||..++.+|+.+.... ...++.|..++.++++
T Consensus 733 ~Av~aL~~~~~--------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~---------~~~~~~L~~ll~D~d~ 789 (897)
T PRK13800 733 EAVRALVSVDD--------------VESVAGAATDENREVRIAVAKGLATLGAGG---------APAGDAVRALTGDPDP 789 (897)
T ss_pred HHHHHHhcccC--------------cHHHHHHhcCCCHHHHHHHHHHHHHhcccc---------chhHHHHHHHhcCCCH
Confidence 99999998631 245678899999999999999999986432 1237788899999999
Q ss_pred hHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcC
Q 005282 292 ESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDS 371 (704)
Q Consensus 292 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~ 371 (704)
.++..|+.+|+++.. +. .+.+.+...+.++++.+|..|+.+|+.+.. ...++.|+.+|.+
T Consensus 790 ~VR~aA~~aLg~~g~--~~--------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~~L~D 849 (897)
T PRK13800 790 LVRAAALAALAELGC--PP--------DDVAAATAALRASAWQVRQGAARALAGAAA----------DVAVPALVEALTD 849 (897)
T ss_pred HHHHHHHHHHHhcCC--cc--------hhHHHHHHHhcCCChHHHHHHHHHHHhccc----------cchHHHHHHHhcC
Confidence 999999999998742 11 134668888999999999999999987643 2355889999999
Q ss_pred CChhHHHHHHHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHH
Q 005282 372 KNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVK 451 (704)
Q Consensus 372 ~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~ 451 (704)
.++.||..|+.+|..+..++. ..+.|...+.+.++.|+
T Consensus 850 ~~~~VR~~A~~aL~~~~~~~~------------------------------------------a~~~L~~al~D~d~~Vr 887 (897)
T PRK13800 850 PHLDVRKAAVLALTRWPGDPA------------------------------------------ARDALTTALTDSDADVR 887 (897)
T ss_pred CCHHHHHHHHHHHhccCCCHH------------------------------------------HHHHHHHHHhCCCHHHH
Confidence 999999999999999732222 22345567888999999
Q ss_pred HHHHHHHHh
Q 005282 452 RRVTLALAH 460 (704)
Q Consensus 452 ~~a~~~L~~ 460 (704)
..|..+|.+
T Consensus 888 ~~A~~aL~~ 896 (897)
T PRK13800 888 AYARRALAH 896 (897)
T ss_pred HHHHHHHhh
Confidence 999999864
No 42
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=9.6e-10 Score=119.93 Aligned_cols=382 Identities=19% Similarity=0.177 Sum_probs=248.1
Q ss_pred HHHHHHHHHHHHhhcC--hhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcC
Q 005282 66 AAAKTASHALVEFAKN--EEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTG 143 (704)
Q Consensus 66 ~~~~~a~~~L~~l~~~--~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g 143 (704)
.++.+-+.++..++++ ++ -..+.++.|.+..++++. ..|+.|..+|..+...-..+ ..+
T Consensus 95 ~vr~k~~dviAeia~~~l~e-----~WPell~~L~q~~~S~~~----------~~rE~al~il~s~~~~~~~~----~~~ 155 (1075)
T KOG2171|consen 95 SVRHKLADVIAEIARNDLPE-----KWPELLQFLFQSTKSPNP----------SLRESALLILSSLPETFGNT----LQP 155 (1075)
T ss_pred HHHHHHHHHHHHHHHhcccc-----chHHHHHHHHHHhcCCCc----------chhHHHHHHHHhhhhhhccc----cch
Confidence 3556666666666653 22 123456777777777765 89999999999998322211 123
Q ss_pred CcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhc-cCCcHHHHHHh----cCCCHHHHHHHHHHHH
Q 005282 144 ALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRV-EDGIPPLVELL----KFVDVKVQRAAAGALR 218 (704)
Q Consensus 144 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll----~~~~~~~~~~a~~~L~ 218 (704)
.++.+..++...-.+++. .++..++.++..++...+..+..... ...+|.++..+ ..++......++.+|.
T Consensus 156 ~~~~l~~lf~q~~~d~s~----~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~ 231 (1075)
T KOG2171|consen 156 HLDDLLRLFSQTMTDPSS----PVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALI 231 (1075)
T ss_pred hHHHHHHHHHHhccCCcc----hHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHH
Confidence 455666666655443332 69999999999988655422222222 23455555554 4677777888999999
Q ss_pred HhccCCchhhHHhHhcCChHHHHHhhcCC--CHHHHHHHHHHHHHHhcCChhhHHHHHH--cCCHHHHHHHhcCCC----
Q 005282 219 TLAFKNDENKKLIVECNALPTLVLMLRSE--DASVHFEAVGVIGNLVHSSPSIKKEVIL--AGALQPVIGLLSSSC---- 290 (704)
Q Consensus 219 ~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~ll~~~~---- 290 (704)
.++...+..-..... .++...+...++. +..+|..|+..|..+++..+...+.... ...++.++.++....
T Consensus 232 El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~e 310 (1075)
T KOG2171|consen 232 ELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDE 310 (1075)
T ss_pred HHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchh
Confidence 988644443333322 2466666666643 7899999999999999775544333222 234556666664221
Q ss_pred ------------hhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHh
Q 005282 291 ------------SESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQ 358 (704)
Q Consensus 291 ------------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 358 (704)
......|..+|..++.+-+.... -.-+++.+-.++++++..-|.+++.+|+.++.+......-.-
T Consensus 311 w~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v---~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l 387 (1075)
T KOG2171|consen 311 WSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQV---LPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL 387 (1075)
T ss_pred hccccccccccccCcHHHHHHHHHHHHhcCChhhe---hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 11356677788887764332211 122467777788999999999999999999988765443334
Q ss_pred hCChHHHHHhhcCCChhHHHHHHHHHHHcccC-CchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhH
Q 005282 359 DGGILPLLKLLDSKNGSLQHNAAFALYGLADN-EDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLN 437 (704)
Q Consensus 359 ~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (704)
...++.++..+.+.++.||..|+.+++.++.+ .... +.+.+..+.+
T Consensus 388 ~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~i---------------------------------qk~~~e~l~~ 434 (1075)
T KOG2171|consen 388 PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEI---------------------------------QKKHHERLPP 434 (1075)
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHH---------------------------------HHHHHHhccH
Confidence 45677788889999999999999999999752 1111 1122233455
Q ss_pred HHHHHHhh-ccHHHHHHHHHHHHhccCCCccc-eeeecCCcHH-HHHHHHhhcchhhhhhHHHHHHHHhhhcC
Q 005282 438 HLLYLLRV-ADRAVKRRVTLALAHLCAPDDCK-TIFIDNNGLE-LLLGLLESTSVKQREESSVALYKLATKAT 507 (704)
Q Consensus 438 ~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~-~~l~~~~~i~-~L~~ll~~~~~~~~~~a~~~L~~L~~~~~ 507 (704)
.|+..+.+ +++.++.+|+.++-|+....... -.-.-.+.+. .+..+++++.+.+|..+..+|...+....
T Consensus 435 aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~ 507 (1075)
T KOG2171|consen 435 ALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ 507 (1075)
T ss_pred HHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence 66777755 57899999999999995432222 1111124555 45556678999999999999998877653
No 43
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.33 E-value=3.1e-11 Score=103.49 Aligned_cols=117 Identities=37% Similarity=0.457 Sum_probs=110.0
Q ss_pred hhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh
Q 005282 189 VRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPS 268 (704)
Q Consensus 189 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 268 (704)
+.+.|+++.+++++.++++.++..++++|++++.+.++....+.+.|+++.+++++.++++.++..++++|++++...+.
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence 56789999999999999999999999999999987789999999999999999999999999999999999999988777
Q ss_pred hHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHh
Q 005282 269 IKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFA 305 (704)
Q Consensus 269 ~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~ 305 (704)
....+...|+++.+++++.+.+.+++..++++|.+++
T Consensus 83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 7777888999999999999999999999999999986
No 44
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.31 E-value=3.6e-11 Score=103.11 Aligned_cols=119 Identities=38% Similarity=0.527 Sum_probs=109.7
Q ss_pred HHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHH
Q 005282 138 IIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGAL 217 (704)
Q Consensus 138 ~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L 217 (704)
.+.+.|+++.+++++.+.+. .++..++++|++++..++.....+...|+++.+++++.++++.++..++++|
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~--------~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L 73 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDE--------NVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWAL 73 (120)
T ss_pred hHHHcCChHHHHHHHHcCCH--------HHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHH
Confidence 46688999999999997764 9999999999999987788888899999999999999999999999999999
Q ss_pred HHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 005282 218 RTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVH 264 (704)
Q Consensus 218 ~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 264 (704)
++++.+.+.....+.+.|+++.+++++.+++..+++.++++|.++++
T Consensus 74 ~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 74 RNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 99998777788888899999999999999999999999999999873
No 45
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.29 E-value=5.4e-10 Score=113.37 Aligned_cols=346 Identities=15% Similarity=0.146 Sum_probs=237.9
Q ss_pred CCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhcc-----CCcHHHHHHhcCCCHHHHHHHHHHH
Q 005282 143 GALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVE-----DGIPPLVELLKFVDVKVQRAAAGAL 217 (704)
Q Consensus 143 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-----~~i~~L~~ll~~~~~~~~~~a~~~L 217 (704)
..+..++.+++.... .++.++.+..+..+...++.....+.+. +...+++.+|..++..+...++..+
T Consensus 53 ~y~~~~l~ll~~~~~-------~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iL 125 (429)
T cd00256 53 QYVKTFVNLLSQIDK-------DDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSIL 125 (429)
T ss_pred HHHHHHHHHHhccCc-------HHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHH
Confidence 356677778877554 3899999999999998777665555553 4567888899999999999999999
Q ss_pred HHhccCCchhhHHhHhcCChHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCC--ChhHH
Q 005282 218 RTLAFKNDENKKLIVECNALPTLVLMLRSE-DASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSS--CSESK 294 (704)
Q Consensus 218 ~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~~~ 294 (704)
..+....+.........-..+.+...+.++ +...+..++.+|..+... +..+..+.+.++++.|+.+|+.. +...+
T Consensus 126 t~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~ 204 (429)
T cd00256 126 AKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRFAFVLADGVPTLVKLLSNATLGFQLQ 204 (429)
T ss_pred HHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHHHHHHccCHHHHHHHHhhccccHHHH
Confidence 999754443222111111334455555543 467778888999999876 67788888888999999999753 34678
Q ss_pred HHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCc-------hhhhHHhhCChHHHH
Q 005282 295 REAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQS-PDSQLKEMSAFALGRLAQDTH-------NQAGIAQDGGILPLL 366 (704)
Q Consensus 295 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~-------~~~~~~~~~~~~~L~ 366 (704)
..++.+++-++. +++....+...++++.|+.+++. ...++.+.+..+|.|+...+. ....++..|.+ +++
T Consensus 205 Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~-~~l 282 (429)
T cd00256 205 YQSIFCIWLLTF-NPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVL-KTL 282 (429)
T ss_pred HHHHHHHHHHhc-cHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChH-HHH
Confidence 899999998876 44455556667999999999985 567899999999999997432 12334555554 555
Q ss_pred HhhcC---CChhHHHHHHH-------HHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchh
Q 005282 367 KLLDS---KNGSLQHNAAF-------ALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVL 436 (704)
Q Consensus 367 ~ll~~---~~~~v~~~a~~-------~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (704)
+.|.. +|+++....-. -+..+++-++...++.. |-+.- .+.+....=|.. ...+..+ ....++
T Consensus 283 ~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~s-g~L~W----Sp~H~se~FW~E-N~~kf~~-~~~~ll 355 (429)
T cd00256 283 QSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRS-GRLHW----SPVHKSEKFWRE-NADRLNE-KNYELL 355 (429)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhc-CCccC----CCCCCCchHHHH-HHHHHHh-cchHHH
Confidence 55533 46665443332 23344444444444433 44332 111111111111 1111111 135678
Q ss_pred HHHHHHHh-hccHHHHHHHHHHHHhccC-CCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhh
Q 005282 437 NHLLYLLR-VADRAVKRRVTLALAHLCA-PDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATK 505 (704)
Q Consensus 437 ~~L~~ll~-~~~~~v~~~a~~~L~~l~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~ 505 (704)
..|+.++. +.++.+..-||.-|+.+++ .|..+..+.+.||-..+.+++.+++++|+..|..++..|..+
T Consensus 356 k~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~ 426 (429)
T cd00256 356 KILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMVH 426 (429)
T ss_pred HHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 88999994 5678888889999999977 567888877889999999999999999999999999888654
No 46
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.29 E-value=1.8e-09 Score=109.59 Aligned_cols=320 Identities=15% Similarity=0.206 Sum_probs=213.9
Q ss_pred HHHHHhhhccCCchhhHHHHHHHHHHHHHhhc-ChhHHHHHHhC-----CChHHHHhhccCCCcCCCCCCCCchHHHHHH
Q 005282 49 AQIDILNSKFSSDETDRAAAKTASHALVEFAK-NEEIVSLIVDN-----GAVPALVEHLQTPPQLTNAQIPYEHEVEKEC 122 (704)
Q Consensus 49 ~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~-----g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a 122 (704)
..+..++.+++..+. .....-.+..+..+.. +|.....+.+. .....++.+|..++. -+...|
T Consensus 53 ~y~~~~l~ll~~~~~-~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~----------~i~~~a 121 (429)
T cd00256 53 QYVKTFVNLLSQIDK-DDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQ----------FIVHMS 121 (429)
T ss_pred HHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCch----------hHHHHH
Confidence 334444444432222 2344555666666655 46655666553 567778888887654 799999
Q ss_pred HHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHH
Q 005282 123 AFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVEL 201 (704)
Q Consensus 123 ~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 201 (704)
+.+|+.+. .++.........-.++.+...+++.++ ...+..|+.+|..+.. .++.|..+.+.++++.|+.+
T Consensus 122 ~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~-------~~~~~~~v~~L~~LL~-~~~~R~~f~~~~~v~~L~~~ 193 (429)
T cd00256 122 FSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITN-------NDYVQTAARCLQMLLR-VDEYRFAFVLADGVPTLVKL 193 (429)
T ss_pred HHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCC-------cchHHHHHHHHHHHhC-CchHHHHHHHccCHHHHHHH
Confidence 99999998 444322211111123344555554422 1677888899999886 67788889899999999999
Q ss_pred hcC--CCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCC------hhhHHH
Q 005282 202 LKF--VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR-SEDASVHFEAVGVIGNLVHSS------PSIKKE 272 (704)
Q Consensus 202 l~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~------~~~~~~ 272 (704)
|+. .+..++..++-++|-++. +++....+...+.++.++++++ +..+.+.+.++.++.|+...+ ......
T Consensus 194 L~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~ 272 (429)
T cd00256 194 LSNATLGFQLQYQSIFCIWLLTF-NPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQ 272 (429)
T ss_pred HhhccccHHHHHHHHHHHHHHhc-cHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHH
Confidence 985 356899999999999997 5666677778899999999998 467899999999999999643 123344
Q ss_pred HHHcCCHHHHHHHhcC--CChhHHHHHHHH-------HHHHhcc--------------CC---------cchHHHHhc--
Q 005282 273 VILAGALQPVIGLLSS--SCSESKREAALL-------LGQFAAA--------------DS---------NSKVHIVQR-- 318 (704)
Q Consensus 273 ~~~~~~l~~L~~ll~~--~~~~~~~~a~~~-------L~~l~~~--------------~~---------~~~~~~~~~-- 318 (704)
++..|+++.+-.+... .|+++....-.. +..+++- ++ ++...+-+.
T Consensus 273 mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~ 352 (429)
T cd00256 273 MVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNY 352 (429)
T ss_pred HHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcch
Confidence 5555665544444332 234432221111 1111100 11 222233333
Q ss_pred CChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCc-hhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcc
Q 005282 319 GAVRPLIEMLQ-SPDSQLKEMSAFALGRLAQDTH-NQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLA 388 (704)
Q Consensus 319 ~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~ 388 (704)
.++..|+++|. +.++.+...||.=++.++.+.+ ++..+-+.|+=..+++++.+.|++|+.+|+.++..+.
T Consensus 353 ~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 353 ELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred HHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 35788999995 5678888999999999997754 5555556688888999999999999999999998773
No 47
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.28 E-value=6.9e-10 Score=121.98 Aligned_cols=351 Identities=23% Similarity=0.296 Sum_probs=242.5
Q ss_pred hhHHHHHHHHHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHH
Q 005282 63 TDRAAAKTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVD 141 (704)
Q Consensus 63 ~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~ 141 (704)
.+...++-+.-.+..+.. +++....+ +..+.+=|.++++ .++..|++++++++ +++..+.+
T Consensus 54 ~~~~~Krl~yl~l~~~~~~~~~~~~l~-----~n~l~kdl~~~n~----------~~~~lAL~~l~~i~-~~~~~~~l-- 115 (526)
T PF01602_consen 54 KDLELKRLGYLYLSLYLHEDPELLILI-----INSLQKDLNSPNP----------YIRGLALRTLSNIR-TPEMAEPL-- 115 (526)
T ss_dssp SSHHHHHHHHHHHHHHTTTSHHHHHHH-----HHHHHHHHCSSSH----------HHHHHHHHHHHHH--SHHHHHHH--
T ss_pred CCHHHHHHHHHHHHHHhhcchhHHHHH-----HHHHHHhhcCCCH----------HHHHHHHhhhhhhc-ccchhhHH--
Confidence 334445555555565555 45543333 6777777887764 89999999999988 45554443
Q ss_pred cCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 005282 142 TGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLA 221 (704)
Q Consensus 142 ~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 221 (704)
++.+.+++.++.+ .++..|+.++.++....|+. +... .++.+.+++.+.++.++..|+.++..+
T Consensus 116 ---~~~v~~ll~~~~~--------~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i- 179 (526)
T PF01602_consen 116 ---IPDVIKLLSDPSP--------YVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI- 179 (526)
T ss_dssp ---HHHHHHHHHSSSH--------HHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-
T ss_pred ---HHHHHHHhcCCch--------HHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-
Confidence 5788888887765 99999999999999776653 2222 689999999999999999999999999
Q ss_pred cCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHH
Q 005282 222 FKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLL 301 (704)
Q Consensus 222 ~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L 301 (704)
..++.... -.-...++.|.+++...++..+..+++.+..++...+..... ...++.+..++.+.++.+...++.++
T Consensus 180 ~~~~~~~~-~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i 255 (526)
T PF01602_consen 180 KCNDDSYK-SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLI 255 (526)
T ss_dssp HCTHHHHT-THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcchhh-hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHH
Confidence 22333211 112223566666678899999999999999998765544321 45678888888888889999999999
Q ss_pred HHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhh-cCCChhHHHHH
Q 005282 302 GQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLL-DSKNGSLQHNA 380 (704)
Q Consensus 302 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll-~~~~~~v~~~a 380 (704)
..+.... . .-..+++.|..++.++++.++..++..|..++.... ..+. .....+..+ .+.+..++..+
T Consensus 256 ~~l~~~~-~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~---~~v~--~~~~~~~~l~~~~d~~Ir~~~ 324 (526)
T PF01602_consen 256 IKLSPSP-E-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNP---PAVF--NQSLILFFLLYDDDPSIRKKA 324 (526)
T ss_dssp HHHSSSH-H-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCH---HHHG--THHHHHHHHHCSSSHHHHHHH
T ss_pred HHhhcch-H-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccc---hhhh--hhhhhhheecCCCChhHHHHH
Confidence 9875422 2 334578999999999999999999999999997661 1222 222333344 48899999999
Q ss_pred HHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHH-hhccHHHHHHHHHHHH
Q 005282 381 AFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLL-RVADRAVKRRVTLALA 459 (704)
Q Consensus 381 ~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll-~~~~~~v~~~a~~~L~ 459 (704)
+.+|..++. +++...++ +.|...+ ...+++++..++..|+
T Consensus 325 l~lL~~l~~-~~n~~~Il--------------------------------------~eL~~~l~~~~d~~~~~~~i~~I~ 365 (526)
T PF01602_consen 325 LDLLYKLAN-ESNVKEIL--------------------------------------DELLKYLSELSDPDFRRELIKAIG 365 (526)
T ss_dssp HHHHHHH---HHHHHHHH--------------------------------------HHHHHHHHHC--HHHHHHHHHHHH
T ss_pred HHHHhhccc-ccchhhHH--------------------------------------HHHHHHHHhccchhhhhhHHHHHH
Confidence 999999974 33333333 3455556 3346677777777777
Q ss_pred hccCCC-ccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282 460 HLCAPD-DCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKA 506 (704)
Q Consensus 460 ~l~~~~-~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 506 (704)
.++... ... .-.+..+++++..+++.+...+...+.++....
T Consensus 366 ~la~~~~~~~-----~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~ 408 (526)
T PF01602_consen 366 DLAEKFPPDA-----EWYVDTLLKLLEISGDYVSNEIINVIRDLLSNN 408 (526)
T ss_dssp HHHHHHGSSH-----HHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHS
T ss_pred HHHhccCchH-----HHHHHHHHHhhhhccccccchHHHHHHHHhhcC
Confidence 775421 111 124667777777666677777777777776654
No 48
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.26 E-value=6.5e-10 Score=122.18 Aligned_cols=276 Identities=23% Similarity=0.260 Sum_probs=202.3
Q ss_pred hhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHH
Q 005282 63 TDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVD 141 (704)
Q Consensus 63 ~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~ 141 (704)
.++.++.-|++++.++. +++....+ ++.+.+++.++++ .||..|+.++.++. .+|+....
T Consensus 91 ~n~~~~~lAL~~l~~i~-~~~~~~~l-----~~~v~~ll~~~~~----------~VRk~A~~~l~~i~~~~p~~~~~--- 151 (526)
T PF01602_consen 91 PNPYIRGLALRTLSNIR-TPEMAEPL-----IPDVIKLLSDPSP----------YVRKKAALALLKIYRKDPDLVED--- 151 (526)
T ss_dssp SSHHHHHHHHHHHHHH--SHHHHHHH-----HHHHHHHHHSSSH----------HHHHHHHHHHHHHHHHCHCCHHG---
T ss_pred CCHHHHHHHHhhhhhhc-ccchhhHH-----HHHHHHHhcCCch----------HHHHHHHHHHHHHhccCHHHHHH---
Confidence 55678889999999877 56666665 7899999998865 99999999999999 77765322
Q ss_pred cCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 005282 142 TGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLA 221 (704)
Q Consensus 142 ~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 221 (704)
. .++.+.+++.+.+. .++..|+.++..+ ..++.... -.....+..|.+++...++-.+..++..+..++
T Consensus 152 ~-~~~~l~~lL~d~~~--------~V~~~a~~~l~~i-~~~~~~~~-~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~ 220 (526)
T PF01602_consen 152 E-LIPKLKQLLSDKDP--------SVVSAALSLLSEI-KCNDDSYK-SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYA 220 (526)
T ss_dssp G-HHHHHHHHTTHSSH--------HHHHHHHHHHHHH-HCTHHHHT-THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTST
T ss_pred H-HHHHHhhhccCCcc--------hhHHHHHHHHHHH-ccCcchhh-hhHHHHHHHhhhcccccchHHHHHHHHHHHhcc
Confidence 1 47889999977654 8999999999999 22332211 222344555666667899999999999999998
Q ss_pred cCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHH
Q 005282 222 FKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLL 301 (704)
Q Consensus 222 ~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L 301 (704)
...+..... ...++.+..++.+.++.|...++.++..+....+ ....+++.|..++.++++.++..++..|
T Consensus 221 ~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s~~~nvr~~~L~~L 291 (526)
T PF01602_consen 221 PMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE------LLQKAINPLIKLLSSSDPNVRYIALDSL 291 (526)
T ss_dssp SSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred cCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH------HHHhhHHHHHHHhhcccchhehhHHHHH
Confidence 644444422 3457788888989999999999999999875422 3345688999999999999999999999
Q ss_pred HHHhccCCcchHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhh-cCCChhHHHH
Q 005282 302 GQFAAADSNSKVHIVQRGAVRPLIEMLQ-SPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLL-DSKNGSLQHN 379 (704)
Q Consensus 302 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll-~~~~~~v~~~ 379 (704)
..++..+ ...+. .....+..+. +++..++..++..|..++....... .++.|.+.+ ...+++++..
T Consensus 292 ~~l~~~~---~~~v~---~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~------Il~eL~~~l~~~~d~~~~~~ 359 (526)
T PF01602_consen 292 SQLAQSN---PPAVF---NQSLILFFLLYDDDPSIRKKALDLLYKLANESNVKE------ILDELLKYLSELSDPDFRRE 359 (526)
T ss_dssp HHHCCHC---HHHHG---THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHHHH------HHHHHHHHHHHC--HHHHHH
T ss_pred HHhhccc---chhhh---hhhhhhheecCCCChhHHHHHHHHHhhcccccchhh------HHHHHHHHHHhccchhhhhh
Confidence 9998654 22222 2333334444 8899999999999999996433222 456777888 4458889999
Q ss_pred HHHHHHHccc
Q 005282 380 AAFALYGLAD 389 (704)
Q Consensus 380 a~~~L~~l~~ 389 (704)
++..++.++.
T Consensus 360 ~i~~I~~la~ 369 (526)
T PF01602_consen 360 LIKAIGDLAE 369 (526)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999974
No 49
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=2.7e-10 Score=116.07 Aligned_cols=307 Identities=19% Similarity=0.160 Sum_probs=210.2
Q ss_pred CChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHH-HHHc---CCcHHHHHHHhhccCCCCCcchhH
Q 005282 92 GAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQI-IVDT---GALPHLVSLLKQYKNGGNSRALSG 166 (704)
Q Consensus 92 g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~-~~~~---g~l~~L~~lL~~~~~~~~~~~~~~ 166 (704)
.++|.|.++|.+++. ...+-|..+|.+++ ++++.-+. +.+. -.+|.++++.++++. .
T Consensus 128 elLp~L~~~L~s~d~----------n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~sp--------k 189 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDY----------NTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSP--------K 189 (885)
T ss_pred hHHHHHHHHhcCCcc----------cccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCCh--------h
Confidence 367999999999875 78999999999999 55554332 1111 257889999998865 8
Q ss_pred HHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcC
Q 005282 167 VIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRS 246 (704)
Q Consensus 167 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~ 246 (704)
+|..|+.++..+...... .-...-..++..+..+..+.++++|+..|.++..|.. ....+-...-.++++.+++..++
T Consensus 190 iRs~A~~cvNq~i~~~~q-al~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Lle-vr~dkl~phl~~IveyML~~tqd 267 (885)
T KOG2023|consen 190 IRSHAVGCVNQFIIIQTQ-ALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLE-VRPDKLVPHLDNIVEYMLQRTQD 267 (885)
T ss_pred HHHHHHhhhhheeecCcH-HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH-hcHHhcccchHHHHHHHHHHccC
Confidence 999999999887743322 2223345667888888889999999999999999985 32233333334577778888888
Q ss_pred CCHHHHHHHHHHHHHHhcCChhhHHHHHH--cCCHHHHHHHhcCC-----------------------------------
Q 005282 247 EDASVHFEAVGVIGNLVHSSPSIKKEVIL--AGALQPVIGLLSSS----------------------------------- 289 (704)
Q Consensus 247 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~ll~~~----------------------------------- 289 (704)
.|++|...||.....++.. +-.+..+.. ...+|.|+.-+.-+
T Consensus 268 ~dE~VALEACEFwla~aeq-pi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~ 346 (885)
T KOG2023|consen 268 VDENVALEACEFWLALAEQ-PICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGN 346 (885)
T ss_pred cchhHHHHHHHHHHHHhcC-cCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccC
Confidence 9999999999999999976 444443332 34566665433110
Q ss_pred ---------------------ChhHHHHHHHHHHHHhccCCcchHHHHhcCCh----HHHHHhhCCCCHHHHHHHHHHHH
Q 005282 290 ---------------------CSESKREAALLLGQFAAADSNSKVHIVQRGAV----RPLIEMLQSPDSQLKEMSAFALG 344 (704)
Q Consensus 290 ---------------------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i----~~L~~ll~~~~~~v~~~a~~~L~ 344 (704)
++.+|...+.+|.-++. +....++ |.|-..|.+++..+++.+..+|+
T Consensus 347 ~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLan--------vf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlG 418 (885)
T KOG2023|consen 347 GEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLAN--------VFGDELLPILLPLLKEHLSSEEWKVREAGVLALG 418 (885)
T ss_pred ccccccccccccccccccccccccHhhccHHHHHHHHH--------hhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHH
Confidence 02334444444444432 2223344 44444556778899999999999
Q ss_pred HhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHccc---CCchhhHHHhhCCcccccccccccccchHHHH
Q 005282 345 RLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD---NEDNVADLVRVGGVQKLQDGEFTVQPTKDCVA 421 (704)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~---~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~ 421 (704)
.++.+.-..-.-.-...++.++.+|.++.+-||...||+|...+. ..+..+.+.
T Consensus 419 AIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~----------------------- 475 (885)
T KOG2023|consen 419 AIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFK----------------------- 475 (885)
T ss_pred HHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhH-----------------------
Confidence 999764221111111346778999999999999999999999874 222112221
Q ss_pred HHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhcc
Q 005282 422 RTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLC 462 (704)
Q Consensus 422 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~ 462 (704)
.++..++..+-+++..||++||.+.+-+-
T Consensus 476 ------------pvL~~ll~~llD~NK~VQEAAcsAfAtle 504 (885)
T KOG2023|consen 476 ------------PVLEGLLRRLLDSNKKVQEAACSAFATLE 504 (885)
T ss_pred ------------HHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 14455677777889999999999999883
No 50
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=4.3e-10 Score=114.63 Aligned_cols=309 Identities=20% Similarity=0.197 Sum_probs=204.6
Q ss_pred CCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhc----cCCcHHHHHHhcCCCHHHHHHHHHHHH
Q 005282 143 GALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRV----EDGIPPLVELLKFVDVKVQRAAAGALR 218 (704)
Q Consensus 143 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~----~~~i~~L~~ll~~~~~~~~~~a~~~L~ 218 (704)
.++|.|+.+|.+++. ...+-|..+|..+|.++...-..-.. .-.+|.++++.++++|.+|..|+.++.
T Consensus 128 elLp~L~~~L~s~d~--------n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvN 199 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDY--------NTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVN 199 (885)
T ss_pred hHHHHHHHHhcCCcc--------cccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhh
Confidence 468999999998876 66788999999999876654322111 234788999999999999999999999
Q ss_pred HhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHH--HcCCHHHHHHHhcCCChhHHHH
Q 005282 219 TLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVI--LAGALQPVIGLLSSSCSESKRE 296 (704)
Q Consensus 219 ~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~--~~~~l~~L~~ll~~~~~~~~~~ 296 (704)
......... -...-...+..+..+-++.+++||+..|.++..+....++. +. -.++++.++..-++.+.++..+
T Consensus 200 q~i~~~~qa-l~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dk---l~phl~~IveyML~~tqd~dE~VALE 275 (885)
T KOG2023|consen 200 QFIIIQTQA-LYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDK---LVPHLDNIVEYMLQRTQDVDENVALE 275 (885)
T ss_pred heeecCcHH-HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHh---cccchHHHHHHHHHHccCcchhHHHH
Confidence 887532221 11222235677777778999999999999999998654432 22 1356777777778888999999
Q ss_pred HHHHHHHHhccCCcchHHHHh--cCChHHHHHhhCCCCH-----------------------------------------
Q 005282 297 AALLLGQFAAADSNSKVHIVQ--RGAVRPLIEMLQSPDS----------------------------------------- 333 (704)
Q Consensus 297 a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~ll~~~~~----------------------------------------- 333 (704)
|+.....++. .+..+..+.. ..++|.|+.-+..++.
T Consensus 276 ACEFwla~ae-qpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eD 354 (885)
T KOG2023|consen 276 ACEFWLALAE-QPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDED 354 (885)
T ss_pred HHHHHHHHhc-CcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccc
Confidence 9999888885 3444443332 2566666655432211
Q ss_pred ---------------HHHHHHHHHHHHhhcCCchhhhHHhhCChHH----HHHhhcCCChhHHHHHHHHHHHcccCCchh
Q 005282 334 ---------------QLKEMSAFALGRLAQDTHNQAGIAQDGGILP----LLKLLDSKNGSLQHNAAFALYGLADNEDNV 394 (704)
Q Consensus 334 ---------------~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~----L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 394 (704)
.+|+..+.+|.-|+. +.....++. |-+.|.+.+..+++.++.+|+.++.
T Consensus 355 dddDe~DDdD~~~dWNLRkCSAAaLDVLan-------vf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAE----- 422 (885)
T KOG2023|consen 355 DDDDEDDDDDAFSDWNLRKCSAAALDVLAN-------VFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAE----- 422 (885)
T ss_pred ccccccccccccccccHhhccHHHHHHHHH-------hhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHH-----
Confidence 223323333332221 122222333 3344455677788888888887742
Q ss_pred hHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCC---ccceee
Q 005282 395 ADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPD---DCKTIF 471 (704)
Q Consensus 395 ~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~---~~~~~l 471 (704)
|+.+.+..+ .+.+++.++.++.++.+-||.-.||+|+.++..- +..+.+
T Consensus 423 ------GcM~g~~p~----------------------LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f 474 (885)
T KOG2023|consen 423 ------GCMQGFVPH----------------------LPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYF 474 (885)
T ss_pred ------HHhhhcccc----------------------hHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhh
Confidence 332222211 1237889999999999999999999999996532 211222
Q ss_pred ecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282 472 IDNNGLELLLGLLESTSVKQREESSVALYKLATKA 506 (704)
Q Consensus 472 ~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 506 (704)
...+..|++.+-+++..||++|..+...+-.+.
T Consensus 475 --~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A 507 (885)
T KOG2023|consen 475 --KPVLEGLLRRLLDSNKKVQEAACSAFATLEEEA 507 (885)
T ss_pred --HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhc
Confidence 134555666666799999999999999887755
No 51
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=6e-10 Score=116.64 Aligned_cols=245 Identities=19% Similarity=0.236 Sum_probs=190.9
Q ss_pred hHHHHHHHHHHHHHhh-c-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHH
Q 005282 64 DRAAAKTASHALVEFA-K-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIV 140 (704)
Q Consensus 64 ~~~~~~~a~~~L~~l~-~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~ 140 (704)
+...+.+++.-|..+- . +++....+--.-.+|.|+.+|+.... .++...|+++|.+++ .-|.-...++
T Consensus 181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n---------~DIMl~AcRaltyl~evlP~S~a~vV 251 (1051)
T KOG0168|consen 181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHN---------FDIMLLACRALTYLCEVLPRSSAIVV 251 (1051)
T ss_pred ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhcccc---------HHHHHHHHHHHHHHHhhccchhheee
Confidence 3344566666555542 2 34433333334578999999999875 699999999999999 8899889999
Q ss_pred HcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHh
Q 005282 141 DTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTL 220 (704)
Q Consensus 141 ~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l 220 (704)
+.++||.|+.-|..-.. .++.++++.+|-.++...+. .+.+.|++...+.++.--+..+++.|+.+..|+
T Consensus 252 ~~~aIPvl~~kL~~Iey-------iDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~ 321 (1051)
T KOG0168|consen 252 DEHAIPVLLEKLLTIEY-------IDVAEQSLQALEKISRRHPK---AILQAGALSAVLSYLDFFSIHAQRVALAIAANC 321 (1051)
T ss_pred cccchHHHHHhhhhhhh-------hHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988876553 49999999999999975553 488899999999999988889999999999999
Q ss_pred ccCCc-hhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcC---ChhhHHHHHHcCCHHHHHHHhcCCC----hh
Q 005282 221 AFKND-ENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHS---SPSIKKEVILAGALQPVIGLLSSSC----SE 292 (704)
Q Consensus 221 ~~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~l~~L~~ll~~~~----~~ 292 (704)
|..-+ +.-..+++ .+|.|..+|...|....+.++-++..++.. .++..+.+...|.+.....++.-.. ..
T Consensus 322 Cksi~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~ 399 (1051)
T KOG0168|consen 322 CKSIRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNG 399 (1051)
T ss_pred HhcCCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCccccccc
Confidence 97322 22333334 599999999999999999999999988843 4566777888999999999886542 23
Q ss_pred HHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhC
Q 005282 293 SKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQ 329 (704)
Q Consensus 293 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~ 329 (704)
+....++.|..++++.+.....+.+.++...|..+|.
T Consensus 400 ~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~ 436 (1051)
T KOG0168|consen 400 TYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQ 436 (1051)
T ss_pred chhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHh
Confidence 4556677888888877888888888888888887775
No 52
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=2.4e-09 Score=103.18 Aligned_cols=194 Identities=20% Similarity=0.231 Sum_probs=169.1
Q ss_pred hhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CCh
Q 005282 55 NSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKP 133 (704)
Q Consensus 55 ~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~ 133 (704)
...+...+.+...+..|+.-|..+..+-++...++..|++..++.++++.+. .+|..|+++|+.++ ++|
T Consensus 87 ~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~----------~lR~~Aa~Vigt~~qNNP 156 (342)
T KOG2160|consen 87 IVILNSSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDA----------ELRELAARVIGTAVQNNP 156 (342)
T ss_pred hhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcH----------HHHHHHHHHHHHHHhcCH
Confidence 3444556677777888999999999988999999999999999999999876 99999999999999 999
Q ss_pred hhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcC--CCHHHHH
Q 005282 134 EHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKF--VDVKVQR 211 (704)
Q Consensus 134 ~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~ 211 (704)
..+..+++.|+++.|+..+.+..+ ..++..|+.+++.+...++.....+...++...|...+++ .+..++.
T Consensus 157 ~~Qe~v~E~~~L~~Ll~~ls~~~~-------~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkr 229 (342)
T KOG2160|consen 157 KSQEQVIELGALSKLLKILSSDDP-------NTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKR 229 (342)
T ss_pred HHHHHHHHcccHHHHHHHHccCCC-------chHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHH
Confidence 999999999999999999996654 2888999999999999999999999999999999999998 6778889
Q ss_pred HHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 005282 212 AAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHS 265 (704)
Q Consensus 212 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 265 (704)
.++..+..+..........+...+....+..+..+.+.++.+.++.++..+...
T Consensus 230 K~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 230 KALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 999999999986666667666677777777888888889999998888777643
No 53
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.16 E-value=8.9e-09 Score=105.71 Aligned_cols=152 Identities=16% Similarity=0.143 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhh
Q 005282 249 ASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEML 328 (704)
Q Consensus 249 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll 328 (704)
..++..++-++.+++..-...+.-+....+..+|+.++..++..+...+..+|.|+.....+.+..++..|+++.+.+++
T Consensus 391 ~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~ 470 (678)
T KOG1293|consen 391 HDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESML 470 (678)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHh
Confidence 45566666666666644333333333467889999999999999999999999999998889999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCchhhhHH--hhCChHHHHHhhcCCChhHHHHHHHHHHHcccC-CchhhHHHhh
Q 005282 329 QSPDSQLKEMSAFALGRLAQDTHNQAGIA--QDGGILPLLKLLDSKNGSLQHNAAFALYGLADN-EDNVADLVRV 400 (704)
Q Consensus 329 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~--~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~l~~~ 400 (704)
.+.++.++..+.|+|.++..+.+...+.. ..-+...+..+.+++++.||+.+...|+|+.++ .+....+++.
T Consensus 471 ~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~~ 545 (678)
T KOG1293|consen 471 TDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLEK 545 (678)
T ss_pred cCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHh
Confidence 99999999999999999999877655432 223334467778999999999999999999975 4555655553
No 54
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=99.10 E-value=2.4e-09 Score=104.81 Aligned_cols=305 Identities=18% Similarity=0.179 Sum_probs=217.1
Q ss_pred HHhHhcCChHHHHHhhcCCCH--HHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcC-CChhHHHHHHHHHHHHh
Q 005282 229 KLIVECNALPTLVLMLRSEDA--SVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSS-SCSESKREAALLLGQFA 305 (704)
Q Consensus 229 ~~~~~~~~i~~L~~lL~~~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~~~~a~~~L~~l~ 305 (704)
..+...|++..|++++..++. .++..+.+.|..+.. .+++..+...| +..++.+.+. ...+..+..+..|.++-
T Consensus 174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF 250 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF 250 (832)
T ss_pred hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence 345567899999999998765 569999999998874 34566666666 5666655543 34667889999999999
Q ss_pred ccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC--CchhhhHHhhCChHHHHHhhcCCChhHHHHHHHH
Q 005282 306 AADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQD--THNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFA 383 (704)
Q Consensus 306 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~ 383 (704)
.++++....++..|+++.++-..+..++.+..+++.+|+|++.+ ...+..+++..+.+.|..+-.+.+.-++..||.+
T Consensus 251 KHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClA 330 (832)
T KOG3678|consen 251 KHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLA 330 (832)
T ss_pred hhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHH
Confidence 98889999999999999999999999999999999999999965 4567789988888888888888888899999999
Q ss_pred HHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHh----hcchhHHHHHHHhhccHHHHHHHHHHHH
Q 005282 384 LYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKV----HGRVLNHLLYLLRVADRAVKRRVTLALA 459 (704)
Q Consensus 384 L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~L~~ll~~~~~~v~~~a~~~L~ 459 (704)
.+.++.+.+.-+.+-+.|-+...-....+..+. .+..-.... ..+-++.|+.++.+..-+.+.-++.-++
T Consensus 331 V~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~------~FARD~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF~l~ 404 (832)
T KOG3678|consen 331 VAVLATNKEVEREVRKSGTLALVEPLVASLDPG------RFARDAHDYAQGRGPDDLQRLVPLLDSNRLEAQCIGAFYLC 404 (832)
T ss_pred HhhhhhhhhhhHHHhhccchhhhhhhhhccCcc------hhhhhhhhhhccCChHHHHHhhhhhhcchhhhhhhHHHHHH
Confidence 999999988888888877654332212222221 111111111 2245677888887665554444443333
Q ss_pred hcc---CCCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhcC-CCCCCCCCCCCCchhhchH--------H
Q 005282 460 HLC---APDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKAT-SLSPMDAAPPSPTQQVYLG--------E 527 (704)
Q Consensus 460 ~l~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~~~~~~~~l~--------~ 527 (704)
.=+ .....-..|.+.|+|+.|.++..+.+......|..+|.-+....+ .+-+-.+.|...+.+.|.. +
T Consensus 405 ~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEEVP~~l~~qVPgWt~AdVQ~WvkkIGFeeY~E 484 (832)
T KOG3678|consen 405 AEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEEVPYKLAQQVPGWTCADVQYWVKKIGFEEYVE 484 (832)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhccccChhhhccCCCcchHHHHHHHHHhCHHHHHH
Confidence 221 122333567788999999999998888888899999999998886 3333344555555555543 3
Q ss_pred hhhcCCCcccEEEEE
Q 005282 528 QFVNNPTLSDVTFVV 542 (704)
Q Consensus 528 ~~~~~~~~~d~~~~~ 542 (704)
.|..+..-.|..+.+
T Consensus 485 kFakQ~VDGDLLLqL 499 (832)
T KOG3678|consen 485 KFAKQMVDGDLLLQL 499 (832)
T ss_pred HHHHHhccchHHHhh
Confidence 455554445555444
No 55
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=4.2e-08 Score=102.24 Aligned_cols=427 Identities=13% Similarity=0.102 Sum_probs=246.5
Q ss_pred CchhhHHHHHHHHHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcC-ChhhHH
Q 005282 60 SDETDRAAAKTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAV-KPEHQQ 137 (704)
Q Consensus 60 ~~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~-~~~~~~ 137 (704)
.++++..++..|+.+|..+.. .-+.-...........-+..+++++. +|..+++...+++|. .-+...
T Consensus 226 tq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~d----------eValQaiEFWsticeEEiD~~~ 295 (859)
T KOG1241|consen 226 TQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDND----------EVALQAIEFWSTICEEEIDLAI 295 (859)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcH----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 345666788899999988876 34444444455566777777887765 999999999999992 222110
Q ss_pred ---HHH---------------HcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHH
Q 005282 138 ---IIV---------------DTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLV 199 (704)
Q Consensus 138 ---~~~---------------~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 199 (704)
... -.+++|.|+++|.+.+++.. +++|..-..|..+|.-++... ++.++. .++|.+-
T Consensus 296 e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d-~DdWnp~kAAg~CL~l~A~~~---~D~Iv~-~Vl~Fie 370 (859)
T KOG1241|consen 296 EYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDD-DDDWNPAKAAGVCLMLFAQCV---GDDIVP-HVLPFIE 370 (859)
T ss_pred HHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcc-cccCcHHHHHHHHHHHHHHHh---cccchh-hhHHHHH
Confidence 111 12578889999988655433 335778777777777666421 111221 3344444
Q ss_pred HHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHH-HHHcCC
Q 005282 200 ELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKE-VILAGA 278 (704)
Q Consensus 200 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~-~~~~~~ 278 (704)
+-++++|..-+..+..+++.+-.+....+..-...+++|.++.++.++.-.++..+.|+++.++...++.... ....+.
T Consensus 371 e~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~ 450 (859)
T KOG1241|consen 371 ENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSK 450 (859)
T ss_pred HhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHH
Confidence 5566899999999999999999877777777778889999999999888899999999999999776543221 112344
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHhccCC----cc-hHHHHh---cCChHHHHHhhCC---CCHHHHHHHHHHHHHhh
Q 005282 279 LQPVIGLLSSSCSESKREAALLLGQFAAADS----NS-KVHIVQ---RGAVRPLIEMLQS---PDSQLKEMSAFALGRLA 347 (704)
Q Consensus 279 l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~----~~-~~~~~~---~~~i~~L~~ll~~---~~~~v~~~a~~~L~~l~ 347 (704)
++.++.-|.+ .+.+..+++|++.+++.... .+ ...... ..++..|++.-.- ....+|..|..+|..+.
T Consensus 451 l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElI 529 (859)
T KOG1241|consen 451 LSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELI 529 (859)
T ss_pred HHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHH
Confidence 5555555544 48899999999999983211 11 000111 1123333333322 34678899999999988
Q ss_pred cCCchhhhHHhhCChHHHHH----hhc-----C-------CChhHHHHHHH-HHHHcccC-CchhhHHHhhCCccccccc
Q 005282 348 QDTHNQAGIAQDGGILPLLK----LLD-----S-------KNGSLQHNAAF-ALYGLADN-EDNVADLVRVGGVQKLQDG 409 (704)
Q Consensus 348 ~~~~~~~~~~~~~~~~~L~~----ll~-----~-------~~~~v~~~a~~-~L~~l~~~-~~~~~~l~~~g~i~~l~~~ 409 (704)
.+...-..-.-.+....++. .++ . .=..+..+.+. +++.+..+ ++....+.. ..+..+-..
T Consensus 530 k~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~-lflri~~s~ 608 (859)
T KOG1241|consen 530 KNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMG-LFLRIFESK 608 (859)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHH-HHHHHHcCC
Confidence 76543221111111111111 111 0 01223333333 22333221 111111111 111111110
Q ss_pred ccc-ccc----chHHHHHHHHHHHHHhhcchhHHHHHHH-hhccHHHHHHHHHHHHhccCCCccceeeecCCcHHHHHHH
Q 005282 410 EFT-VQP----TKDCVARTLKRLEEKVHGRVLNHLLYLL-RVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGL 483 (704)
Q Consensus 410 ~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~l 483 (704)
... ++. ..-++...+...-.++...+.|.|..-+ ...+-.|...|.+.++.|++.-+........+.+..|++.
T Consensus 609 ~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~ 688 (859)
T KOG1241|consen 609 RSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQC 688 (859)
T ss_pred ccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 000 000 0112333444444445556777888777 5566788888888899997755444444445667778888
Q ss_pred Hhhc--chhhhhhHHHHHHHHh
Q 005282 484 LEST--SVKQREESSVALYKLA 503 (704)
Q Consensus 484 l~~~--~~~~~~~a~~~L~~L~ 503 (704)
|+++ +..++-....+...++
T Consensus 689 Lss~~~hR~vKP~IlS~FgDIA 710 (859)
T KOG1241|consen 689 LSSPNLHRNVKPAILSVFGDIA 710 (859)
T ss_pred ccCccccccccchHHHHHHHHH
Confidence 8763 3334444444444443
No 56
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=2.3e-08 Score=96.51 Aligned_cols=184 Identities=18% Similarity=0.144 Sum_probs=163.2
Q ss_pred chHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCC
Q 005282 115 EHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDG 194 (704)
Q Consensus 115 d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 194 (704)
+.+-+..|..-|..++.+-++...++..|++..++..+.+.+. ++|+.|++.++..+..+|..+..+.+.|+
T Consensus 96 ~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~--------~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~ 167 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDA--------ELRELAARVIGTAVQNNPKSQEQVIELGA 167 (342)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcH--------HHHHHHHHHHHHHHhcCHHHHHHHHHccc
Confidence 5688999999999999888999999999999999998888876 99999999999999999999999999999
Q ss_pred cHHHHHHhcCC-CHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcC--CCHHHHHHHHHHHHHHhcCChhhHH
Q 005282 195 IPPLVELLKFV-DVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRS--EDASVHFEAVGVIGNLVHSSPSIKK 271 (704)
Q Consensus 195 i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~ 271 (704)
++.|+..+.++ +..++..|+.+++.+..+++.....+...++...|...+.+ .+...++.++..+..+.........
T Consensus 168 L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d 247 (342)
T KOG2160|consen 168 LSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDED 247 (342)
T ss_pred HHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999999954 45777999999999999999999999999999999999998 6788899999999999988766666
Q ss_pred HHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q 005282 272 EVILAGALQPVIGLLSSSCSESKREAALLLGQFAA 306 (704)
Q Consensus 272 ~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~ 306 (704)
.+...++...+..+....+.++...+..++..+..
T Consensus 248 ~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 248 IASSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 55567777778888888888888888887776654
No 57
>PTZ00429 beta-adaptin; Provisional
Probab=99.02 E-value=4.1e-07 Score=100.09 Aligned_cols=379 Identities=16% Similarity=0.114 Sum_probs=232.4
Q ss_pred HHHHHHHHHH-HhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcCC
Q 005282 67 AAKTASHALV-EFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTGA 144 (704)
Q Consensus 67 ~~~~a~~~L~-~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~ 144 (704)
.+.++++.+. .++.+.+... +.+.++.++.+.+. +++.-..-.+.+++ .+|+..-. +
T Consensus 48 ~kk~alKkvIa~mt~G~DvS~------LF~dVvk~~~S~d~----------elKKLvYLYL~~ya~~~pelalL-----a 106 (746)
T PTZ00429 48 RKKAAVKRIIANMTMGRDVSY------LFVDVVKLAPSTDL----------ELKKLVYLYVLSTARLQPEKALL-----A 106 (746)
T ss_pred HHHHHHHHHHHHHHCCCCchH------HHHHHHHHhCCCCH----------HHHHHHHHHHHHHcccChHHHHH-----H
Confidence 4566665444 4445554433 35777888887754 89998888898998 56654322 2
Q ss_pred cHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC
Q 005282 145 LPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKN 224 (704)
Q Consensus 145 l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 224 (704)
+..+.+-+.++++ .++..|+.+|+++-. +..- .-.++.+.+.+.+.++.||+.|+.++..+-..+
T Consensus 107 INtl~KDl~d~Np--------~IRaLALRtLs~Ir~--~~i~-----e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~ 171 (746)
T PTZ00429 107 VNTFLQDTTNSSP--------VVRALAVRTMMCIRV--SSVL-----EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDD 171 (746)
T ss_pred HHHHHHHcCCCCH--------HHHHHHHHHHHcCCc--HHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC
Confidence 3555555554443 888899998888763 2221 234566788888999999999999999997644
Q ss_pred chhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHH
Q 005282 225 DENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQF 304 (704)
Q Consensus 225 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l 304 (704)
++ .+.+.+.++.|.++|.+.++.|...|+.+|..+...++.. .-...+.+..++..+.+.++..+...+.+|...
T Consensus 172 pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~--l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y 246 (746)
T PTZ00429 172 MQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK--IESSNEWVNRLVYHLPECNEWGQLYILELLAAQ 246 (746)
T ss_pred cc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh--hHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc
Confidence 42 3446678899999999999999999999999998665432 122345567777777777777777777777553
Q ss_pred hccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCc-hhhhHHhhCChHHHHHhhcCCChhHHHHHHHH
Q 005282 305 AAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTH-NQAGIAQDGGILPLLKLLDSKNGSLQHNAAFA 383 (704)
Q Consensus 305 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~ 383 (704)
. +...... ..++..+...+++.++.|.-.|+.++.++..... ......-.....+++.+ .+++++++..++..
T Consensus 247 ~---P~~~~e~--~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~ 320 (746)
T PTZ00429 247 R---PSDKESA--ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL-SRRDAETQYIVCKN 320 (746)
T ss_pred C---CCCcHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHH
Confidence 2 2222111 3567888888999999999999999999986532 11111111122456666 45788999999988
Q ss_pred HHHcccCCchhhHHHhhCCcccc----cccccccccchHHHHHHHHHHH-HHhhcchhHHHHHHHhhccHHHHHHHHHHH
Q 005282 384 LYGLADNEDNVADLVRVGGVQKL----QDGEFTVQPTKDCVARTLKRLE-EKVHGRVLNHLLYLLRVADRAVKRRVTLAL 458 (704)
Q Consensus 384 L~~l~~~~~~~~~l~~~g~i~~l----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L 458 (704)
+..+.... +.+.... +..+ -+..+. +.-....+..+. +.....++..|.....+.+.+++..+..+|
T Consensus 321 I~~i~~~~---P~lf~~~-~~~Ff~~~~Dp~yI----K~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAI 392 (746)
T PTZ00429 321 IHALLVIF---PNLLRTN-LDSFYVRYSDPPFV----KLEKLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAI 392 (746)
T ss_pred HHHHHHHC---HHHHHHH-HHhhhcccCCcHHH----HHHHHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 87776522 1222211 1111 000000 000001111111 111233555666666666777777777777
Q ss_pred HhccCCCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhh
Q 005282 459 AHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATK 505 (704)
Q Consensus 459 ~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~ 505 (704)
+.++..-+. .....+..|++++..+.. +...++.++.++.++
T Consensus 393 g~lA~k~~~----~a~~cV~~Ll~ll~~~~~-~v~e~i~vik~Ilrk 434 (746)
T PTZ00429 393 ASLAIKVDS----VAPDCANLLLQIVDRRPE-LLPQVVTAAKDIVRK 434 (746)
T ss_pred HHHHHhChH----HHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHH
Confidence 777542111 112456666676654333 333566666666554
No 58
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=9.6e-08 Score=100.58 Aligned_cols=256 Identities=18% Similarity=0.141 Sum_probs=197.8
Q ss_pred hHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc--CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHH
Q 005282 94 VPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA--VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRA 171 (704)
Q Consensus 94 i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~--~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a 171 (704)
+..|++-|+... |+..+.+|+.-|+.+. ++++....+--.-.+|.|+.+|+...+ .+++..|
T Consensus 169 ~kkLL~gL~~~~---------Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n-------~DIMl~A 232 (1051)
T KOG0168|consen 169 AKKLLQGLQAES---------DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHN-------FDIMLLA 232 (1051)
T ss_pred HHHHHHhccccC---------ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhcccc-------HHHHHHH
Confidence 466666676664 3467777777777666 676666555556689999999998776 3999999
Q ss_pred HHHHHHhhhcChhhhhhhhccCCcHHHHHHhc-CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHH
Q 005282 172 ADAITNLAHENANIKTRVRVEDGIPPLVELLK-FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDAS 250 (704)
Q Consensus 172 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~ 250 (704)
+.+|.++|.--|+-...+++.+.||.|+.-|. -...++.+.++.+|-.+++. .-..+.+.|++...+.+|.--...
T Consensus 233 cRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~---H~~AiL~AG~l~a~LsylDFFSi~ 309 (1051)
T KOG0168|consen 233 CRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR---HPKAILQAGALSAVLSYLDFFSIH 309 (1051)
T ss_pred HHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh---ccHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999888888889999999999986655 67789999999999999963 334567889999999998877889
Q ss_pred HHHHHHHHHHHHhcCC-hhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc---cCCcchHHHHhcCChHHHHH
Q 005282 251 VHFEAVGVIGNLVHSS-PSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAA---ADSNSKVHIVQRGAVRPLIE 326 (704)
Q Consensus 251 v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~~~~i~~L~~ 326 (704)
+++.|+.+..|+|..- ++....++ ..+|.|..+|+..+....+.++.++..++. ++++..+.+...|++.....
T Consensus 310 aQR~AlaiaaN~Cksi~sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~q 387 (1051)
T KOG0168|consen 310 AQRVALAIAANCCKSIRSDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQ 387 (1051)
T ss_pred HHHHHHHHHHHHHhcCCCccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHH
Confidence 9999999999999642 22222233 469999999999988888888888888763 34566677888899999888
Q ss_pred hhCCCC----HHHHHHHHHHHHHhhcC-CchhhhHHhhCChHHHHHhhc
Q 005282 327 MLQSPD----SQLKEMSAFALGRLAQD-THNQAGIAQDGGILPLLKLLD 370 (704)
Q Consensus 327 ll~~~~----~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~L~~ll~ 370 (704)
++.-.+ ..+......+|.-++.+ +-....+...++...+..+|.
T Consensus 388 Llsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~ 436 (1051)
T KOG0168|consen 388 LLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQ 436 (1051)
T ss_pred HHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHh
Confidence 886432 34566778888888887 444566677777777777763
No 59
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=99.00 E-value=2.8e-08 Score=97.52 Aligned_cols=277 Identities=21% Similarity=0.224 Sum_probs=204.5
Q ss_pred hHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCc
Q 005282 83 EIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSR 162 (704)
Q Consensus 83 ~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~ 162 (704)
..++.+...|++..|+.+++.++. +..++.+|.+.|-.+... ++++.+...| +..++.+-+....
T Consensus 171 ~LCD~iR~~~~lD~Llrmf~aPn~--------et~vRve~~rlLEq~~~a-eN~d~va~~~-~~~Il~lAK~~e~----- 235 (832)
T KOG3678|consen 171 GLCDAIRLDGGLDLLLRMFQAPNL--------ETSVRVEAARLLEQILVA-ENRDRVARIG-LGVILNLAKEREP----- 235 (832)
T ss_pred hhhhHhhccchHHHHHHHHhCCch--------hHHHHHHHHHHHHHHHhh-hhhhHHhhcc-chhhhhhhhhcCc-----
Confidence 455777788999999999999987 567899999999998833 5677777776 6666666654433
Q ss_pred chhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhcc-CCchhhHHhHhcCChHHHH
Q 005282 163 ALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAF-KNDENKKLIVECNALPTLV 241 (704)
Q Consensus 163 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~~L~ 241 (704)
+++.+..+.+|.++..++++....++..|++..++-.++..+|.+.+++.-+|.|++. +....+..+++..+-+.|.
T Consensus 236 --~e~aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF 313 (832)
T KOG3678|consen 236 --VELARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLF 313 (832)
T ss_pred --HHHHHHHHHHHHHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhh
Confidence 4899999999999999999999999999999999999999999999999999999975 3456777888888888888
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCCh
Q 005282 242 LMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAV 321 (704)
Q Consensus 242 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i 321 (704)
.+..+.|+-.+..||-+++.++.. .+....+...|.+..+-.++.+-++.. ++....+..+ -....-+
T Consensus 314 ~LA~skDel~R~~AClAV~vlat~-KE~E~~VrkS~TlaLVEPlva~~DP~~----------FARD~hd~aQ-G~~~d~L 381 (832)
T KOG3678|consen 314 PLAFSKDELLRLHACLAVAVLATN-KEVEREVRKSGTLALVEPLVASLDPGR----------FARDAHDYAQ-GRGPDDL 381 (832)
T ss_pred hhhcchHHHHHHHHHHHHhhhhhh-hhhhHHHhhccchhhhhhhhhccCcch----------hhhhhhhhhc-cCChHHH
Confidence 888888899999999999999865 566666777776665555555544432 1110000000 0012357
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhh--cCCchhhhH-HhhCChHHHHHhhcCCChhHHHHHHHHHHHcc
Q 005282 322 RPLIEMLQSPDSQLKEMSAFALGRLA--QDTHNQAGI-AQDGGILPLLKLLDSKNGSLQHNAAFALYGLA 388 (704)
Q Consensus 322 ~~L~~ll~~~~~~v~~~a~~~L~~l~--~~~~~~~~~-~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~ 388 (704)
+.|+.+|.+..-+.+..++.-++.=+ ...+++..+ .+-|+++.|-++..+.+.--...|-.+|.-+.
T Consensus 382 qRLvPlLdS~R~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviG 451 (832)
T KOG3678|consen 382 QRLVPLLDSNRLEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIG 451 (832)
T ss_pred HHhhhhhhcchhhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhc
Confidence 88899998777777666555554433 233444444 44588999888888777766667777777664
No 60
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=3.3e-06 Score=88.76 Aligned_cols=316 Identities=16% Similarity=0.196 Sum_probs=228.5
Q ss_pred CchhhHHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCch
Q 005282 37 GATQQDLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEH 116 (704)
Q Consensus 37 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~ 116 (704)
+.+.+....-|+.+++.+-.. .-...++.|++.|..+++ .++..+ .+.++++|++.|+.+-. |+
T Consensus 14 ~~k~~s~aETI~kLcDRvess-----TL~eDRR~A~rgLKa~sr--kYR~~V-ga~Gmk~li~vL~~D~~--------D~ 77 (970)
T KOG0946|consen 14 PPKQQSAAETIEKLCDRVESS-----TLLEDRRDAVRGLKAFSR--KYREEV-GAQGMKPLIQVLQRDYM--------DP 77 (970)
T ss_pred CCccccHHhHHHHHHHHHhhc-----cchhhHHHHHHHHHHHHH--HHHHHH-HHcccHHHHHHHhhccC--------CH
Confidence 344445556688888888552 334457888999988875 444443 56678999999999887 88
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcH
Q 005282 117 EVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIP 196 (704)
Q Consensus 117 ~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 196 (704)
++...++.++.++..+.+. |. .+.++. ..-..+.|.--.+ +...+.|.
T Consensus 78 E~ik~~LdTl~il~~~dd~----------~~---v~dds~---------qsdd~g~~iae~f----------ik~qd~I~ 125 (970)
T KOG0946|consen 78 EIIKYALDTLLILTSHDDS----------PE---VMDDST---------QSDDLGLWIAEQF----------IKNQDNIT 125 (970)
T ss_pred HHHHHHHHHHHHHHhcCcc----------hh---hcccch---------hhhHHHHHHHHHH----------HcCchhHH
Confidence 9999999999998843330 00 011110 1111233322222 33356788
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhccCCc-hhhHHhH-hcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 005282 197 PLVELLKFVDVKVQRAAAGALRTLAFKND-ENKKLIV-ECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVI 274 (704)
Q Consensus 197 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~-~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 274 (704)
.++..+...|-.+|..++..+.++....+ +.+..+. ..-+|..++.+|++..+.+|-.++..|..++.+++...+.+.
T Consensus 126 lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVA 205 (970)
T KOG0946|consen 126 LLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVA 205 (970)
T ss_pred HHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHH
Confidence 89999999999999999999999865443 4555544 567899999999999999999999999999999998888888
Q ss_pred HcCCHHHHHHHhcCC---Ch-hHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCC---CCH--------HH--HH
Q 005282 275 LAGALQPVIGLLSSS---CS-ESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQS---PDS--------QL--KE 337 (704)
Q Consensus 275 ~~~~l~~L~~ll~~~---~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~---~~~--------~v--~~ 337 (704)
-.+++..|..++... +. -+...|+..|.|+...+..++..+.+.+.++.|.++|.. ++. .+ ..
T Consensus 206 FENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~ 285 (970)
T KOG0946|consen 206 FENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVI 285 (970)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHH
Confidence 888999999999643 22 357889999999999889999999999999999988853 221 12 22
Q ss_pred HHHHHHHHhhcCC-------chhhhHHhhCChHHHHHhhcCC--ChhHHHHHHHHHHHccc-CCchhhHHHhh
Q 005282 338 MSAFALGRLAQDT-------HNQAGIAQDGGILPLLKLLDSK--NGSLQHNAAFALYGLAD-NEDNVADLVRV 400 (704)
Q Consensus 338 ~a~~~L~~l~~~~-------~~~~~~~~~~~~~~L~~ll~~~--~~~v~~~a~~~L~~l~~-~~~~~~~l~~~ 400 (704)
.++.++..+.... .++..+...+++..|+.++.+. ..+++..+..++++..+ +..+...+...
T Consensus 286 ~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v 358 (970)
T KOG0946|consen 286 EALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADV 358 (970)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhc
Confidence 3455555555332 2345677889999999888664 45788899999999986 66667777664
No 61
>PTZ00429 beta-adaptin; Provisional
Probab=98.97 E-value=1e-06 Score=96.93 Aligned_cols=384 Identities=13% Similarity=0.048 Sum_probs=229.7
Q ss_pred HHHHHHHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCc
Q 005282 67 AAKTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGAL 145 (704)
Q Consensus 67 ~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l 145 (704)
.++-..-.+.+.+. +|+..-.. +..+.+=+.++++ .+|..|+++++++-.. +..+. .+
T Consensus 84 lKKLvYLYL~~ya~~~pelalLa-----INtl~KDl~d~Np----------~IRaLALRtLs~Ir~~-~i~e~-----l~ 142 (746)
T PTZ00429 84 LKKLVYLYVLSTARLQPEKALLA-----VNTFLQDTTNSSP----------VVRALAVRTMMCIRVS-SVLEY-----TL 142 (746)
T ss_pred HHHHHHHHHHHHcccChHHHHHH-----HHHHHHHcCCCCH----------HHHHHHHHHHHcCCcH-HHHHH-----HH
Confidence 34444444555554 34433222 5667766666654 8999999999887732 22222 23
Q ss_pred HHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCc
Q 005282 146 PHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKND 225 (704)
Q Consensus 146 ~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 225 (704)
+.+.+.+.+.+. -|+..|+.++.++...+++ .+...+.++.|.+++.+.++.+..+|+.+|..+...++
T Consensus 143 ~~lkk~L~D~~p--------YVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~ 211 (746)
T PTZ00429 143 EPLRRAVADPDP--------YVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGS 211 (746)
T ss_pred HHHHHHhcCCCH--------HHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCc
Confidence 456666665543 9999999999999876654 34566888999999999999999999999999986444
Q ss_pred hhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHh
Q 005282 226 ENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFA 305 (704)
Q Consensus 226 ~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~ 305 (704)
..- -...+.+..++..+...++..+...+.+|......++ .. ....+..+...|++.++.+.-.|+.++.++.
T Consensus 212 ~~l--~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~---~e--~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~ 284 (746)
T PTZ00429 212 EKI--ESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDK---ES--AETLLTRVLPRMSHQNPAVVMGAIKVVANLA 284 (746)
T ss_pred hhh--HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCc---HH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 321 1233446667777777788888888888865432211 11 1346777888888999999999999999886
Q ss_pred ccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHH
Q 005282 306 AADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALY 385 (704)
Q Consensus 306 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~ 385 (704)
...+.......-..+-.+++.+ .+++++++..++..|.-+....+ .+... -+..+.-... ....++...+.+|.
T Consensus 285 ~~~~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P---~lf~~-~~~~Ff~~~~-Dp~yIK~~KLeIL~ 358 (746)
T PTZ00429 285 SRCSQELIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIFP---NLLRT-NLDSFYVRYS-DPPFVKLEKLRLLL 358 (746)
T ss_pred CcCCHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCH---HHHHH-HHHhhhcccC-CcHHHHHHHHHHHH
Confidence 4321111111111233566666 45678899999888877776442 22222 1323222223 33458999999999
Q ss_pred HcccCCchhhHHHhhCCcccccccccccc-cchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCC
Q 005282 386 GLADNEDNVADLVRVGGVQKLQDGEFTVQ-PTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAP 464 (704)
Q Consensus 386 ~l~~~~~~~~~l~~~g~i~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 464 (704)
.++. ++|...++++ ..+...+...... ...+.+.....+. +......+..|+.+++.+.. +...++.++.++.+.
T Consensus 359 ~Lan-e~Nv~~IL~E-L~eYa~d~D~ef~r~aIrAIg~lA~k~-~~~a~~cV~~Ll~ll~~~~~-~v~e~i~vik~Ilrk 434 (746)
T PTZ00429 359 KLVT-PSVAPEILKE-LAEYASGVDMVFVVEVVRAIASLAIKV-DSVAPDCANLLLQIVDRRPE-LLPQVVTAAKDIVRK 434 (746)
T ss_pred HHcC-cccHHHHHHH-HHHHhhcCCHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHH
Confidence 8874 4444444432 1111111100000 1111222222111 12244577788888876544 445677888888443
Q ss_pred CccceeeecCCcHHHHHHHH--h-hcchhhhhhHHHHHHHHhhh
Q 005282 465 DDCKTIFIDNNGLELLLGLL--E-STSVKQREESSVALYKLATK 505 (704)
Q Consensus 465 ~~~~~~l~~~~~i~~L~~ll--~-~~~~~~~~~a~~~L~~L~~~ 505 (704)
.... ..+..|+..+ . -.+++.+...+|.|+..+..
T Consensus 435 yP~~------~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~ 472 (746)
T PTZ00429 435 YPEL------LMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDF 472 (746)
T ss_pred CccH------HHHHHHHHhhcccccccHHHHHHHHHHHHhhHhh
Confidence 2221 1345555433 1 25667777778888877653
No 62
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.95 E-value=2.9e-07 Score=90.15 Aligned_cols=276 Identities=16% Similarity=0.230 Sum_probs=193.4
Q ss_pred ChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcC-CcHHHHHHHhhccCCCCCcchhHHHHH
Q 005282 93 AVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTG-ALPHLVSLLKQYKNGGNSRALSGVIRR 170 (704)
Q Consensus 93 ~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g-~l~~L~~lL~~~~~~~~~~~~~~~~~~ 170 (704)
.-+..+.+|.+.+. .+...+.++++.++ .++.... ..+.. ....|...+.+..++ +.+..
T Consensus 115 ~~~~fl~ll~r~d~----------~iv~~~~~Ils~la~~g~~~~~-~~e~~~~~~~l~~~l~~~~~~-------~~~~~ 176 (442)
T KOG2759|consen 115 EWLSFLNLLNRQDT----------FIVEMSFRILSKLACFGNCKME-LSELDVYKGFLKEQLQSSTNN-------DYIQF 176 (442)
T ss_pred chHHHHHHHhcCCh----------HHHHHHHHHHHHHHHhcccccc-chHHHHHHHHHHHHHhccCCC-------chHHH
Confidence 35677888888876 77777999999999 3322111 00000 123344444443321 67778
Q ss_pred HHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc--CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcC-C
Q 005282 171 AADAITNLAHENANIKTRVRVEDGIPPLVELLK--FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRS-E 247 (704)
Q Consensus 171 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~ 247 (704)
+..+|..+.. -++.|..++..+++..++..+. ..+-.++...+.++|.|+. ++...+.+...+.++.|.+++++ .
T Consensus 177 ~~rcLQ~ll~-~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtF-n~~~ae~~~~~~li~~L~~Ivk~~~ 254 (442)
T KOG2759|consen 177 AARCLQTLLR-VDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTF-NPHAAEKLKRFDLIQDLSDIVKEST 254 (442)
T ss_pred HHHHHHHHhc-CcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhc-CHHHHHHHhhccHHHHHHHHHHHHH
Confidence 8889988886 5677888999999999999984 4567899999999999997 77777888888999999999985 5
Q ss_pred CHHHHHHHHHHHHHHhcCCh------hhHHHHHHcCCHHHHHHHhcC--CChhHHHHHHHH-------HHHHhcc-----
Q 005282 248 DASVHFEAVGVIGNLVHSSP------SIKKEVILAGALQPVIGLLSS--SCSESKREAALL-------LGQFAAA----- 307 (704)
Q Consensus 248 ~~~v~~~a~~~L~~l~~~~~------~~~~~~~~~~~l~~L~~ll~~--~~~~~~~~a~~~-------L~~l~~~----- 307 (704)
.+.|.+-++.++.|+....+ .....++..++.+.+-.+-.. .++++....-.. ...+++.
T Consensus 255 KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~s 334 (442)
T KOG2759|consen 255 KEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKS 334 (442)
T ss_pred HHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 67899999999999997764 233444455555544444432 233332221111 1111111
Q ss_pred ---------C---------CcchHHHHhc--CChHHHHHhhCC-CCHHHHHHHHHHHHHhhcC-CchhhhHHhhCChHHH
Q 005282 308 ---------D---------SNSKVHIVQR--GAVRPLIEMLQS-PDSQLKEMSAFALGRLAQD-THNQAGIAQDGGILPL 365 (704)
Q Consensus 308 ---------~---------~~~~~~~~~~--~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~L 365 (704)
+ .++...+.+. .++..|+++|+. .|+.+...||.=++...++ +.++..+.+.||-+.+
T Consensus 335 El~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~v 414 (442)
T KOG2759|consen 335 ELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERV 414 (442)
T ss_pred HHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHH
Confidence 1 1233334443 578999999975 5688888999999999965 6666777778999999
Q ss_pred HHhhcCCChhHHHHHHHHHHHcc
Q 005282 366 LKLLDSKNGSLQHNAAFALYGLA 388 (704)
Q Consensus 366 ~~ll~~~~~~v~~~a~~~L~~l~ 388 (704)
++++++.|++|+.+|+.|+..+.
T Consensus 415 M~Llnh~d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 415 MNLLNHEDPEVRYHALLAVQKLM 437 (442)
T ss_pred HHHhcCCCchHHHHHHHHHHHHH
Confidence 99999999999999999988764
No 63
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=1.1e-06 Score=92.72 Aligned_cols=392 Identities=18% Similarity=0.216 Sum_probs=248.5
Q ss_pred chhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHH
Q 005282 61 DETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQII 139 (704)
Q Consensus 61 ~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~ 139 (704)
++.++.+.--|+-+|.+++.. +..+.+ .|.+-++++..++ .+|..|+-|...+- ..|+....+
T Consensus 117 ~s~nq~vVglAL~alg~i~s~-Emardl-----apeVe~Ll~~~~~----------~irKKA~Lca~r~irK~P~l~e~f 180 (866)
T KOG1062|consen 117 NSSNQYVVGLALCALGNICSP-EMARDL-----APEVERLLQHRDP----------YIRKKAALCAVRFIRKVPDLVEHF 180 (866)
T ss_pred cCCCeeehHHHHHHhhccCCH-HHhHHh-----hHHHHHHHhCCCH----------HHHHHHHHHHHHHHHcCchHHHHh
Confidence 456677778888888887763 433433 5888888888765 89999999999999 888876554
Q ss_pred HHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc---------------C
Q 005282 140 VDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLK---------------F 204 (704)
Q Consensus 140 ~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~---------------~ 204 (704)
+ +...++|.+.+. .+...++..+..+|..+++.-..+.+ .++.++..|+ -
T Consensus 181 ~-----~~~~~lL~ek~h--------GVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi 245 (866)
T KOG1062|consen 181 V-----IAFRKLLCEKHH--------GVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGI 245 (866)
T ss_pred h-----HHHHHHHhhcCC--------ceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCC
Confidence 4 667777777665 78888888888888777665544443 5666666665 1
Q ss_pred CCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCC------HHHHHHHHHHHHHHhcCChhhHHHHHHcCC
Q 005282 205 VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSED------ASVHFEAVGVIGNLVHSSPSIKKEVILAGA 278 (704)
Q Consensus 205 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 278 (704)
++|-++...++.|+-|..++++..+.+.+ .|-+.....+ -.+...++.++..|-.. ...+. -+
T Consensus 246 ~dPFLQi~iLrlLriLGq~d~daSd~M~D-----iLaqvatntdsskN~GnAILYE~V~TI~~I~~~-~~Lrv-----la 314 (866)
T KOG1062|consen 246 SDPFLQIRILRLLRILGQNDADASDLMND-----ILAQVATNTDSSKNAGNAILYECVRTIMDIRSN-SGLRV-----LA 314 (866)
T ss_pred CchHHHHHHHHHHHHhcCCCccHHHHHHH-----HHHHHHhcccccccchhHHHHHHHHHHHhccCC-chHHH-----HH
Confidence 37889999999999999876666665543 3444444221 35667777777776433 22221 23
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHh
Q 005282 279 LQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQ 358 (704)
Q Consensus 279 l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 358 (704)
+..|-++|.+.+..++..|+..|......++...++- =..++..|+++|..++..|++.+..|......+.
T Consensus 315 iniLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrH-----r~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~---- 385 (866)
T KOG1062|consen 315 INILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRH-----RSTILECLKDPDVSIKRRALELSYALVNESNVRV---- 385 (866)
T ss_pred HHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHH-----HHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHH----
Confidence 5667777777777788888888877765554432221 2467788899999999999998888876554332
Q ss_pred hCChHHHHHhhcCCChhHHHHHHHHHHHccc--CCchhhHHHhhCCcccccc-cccccccc----hHHHHHHHHHHHHHh
Q 005282 359 DGGILPLLKLLDSKNGSLQHNAAFALYGLAD--NEDNVADLVRVGGVQKLQD-GEFTVQPT----KDCVARTLKRLEEKV 431 (704)
Q Consensus 359 ~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~l~~~g~i~~l~~-~~~~~~~~----~~~~~~~~~~~~~~~ 431 (704)
.+..|+..|.+.+++.+..++.-+..++. .|++++.|-.-. .+|.. +.+..... .+-+++.+...+.-.
T Consensus 386 --mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml--~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~ 461 (866)
T KOG1062|consen 386 --MVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTML--KVLKTAGDFVNDDVVNNLLRLIANAFQELHEYA 461 (866)
T ss_pred --HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHH--HHHHhcccccchhhHHHHHHHHhcCCcchhhHH
Confidence 33567888888899999999998888885 666665432210 00000 01111111 112222222222111
Q ss_pred hcchhHHHHH--HHhhccHHHHHHHHHHHHhcc---CC---CccceeeecCCcHHHHHHHHhh--cchhhhhhHHHHHHH
Q 005282 432 HGRVLNHLLY--LLRVADRAVKRRVTLALAHLC---AP---DDCKTIFIDNNGLELLLGLLES--TSVKQREESSVALYK 501 (704)
Q Consensus 432 ~~~~~~~L~~--ll~~~~~~v~~~a~~~L~~l~---~~---~~~~~~l~~~~~i~~L~~ll~~--~~~~~~~~a~~~L~~ 501 (704)
...++..+.. ++.-.++.....|.|+|+... -+ ++.-...-+...+..|.+++.+ .+..++..|..||..
T Consensus 462 ~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~K 541 (866)
T KOG1062|consen 462 VLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLK 541 (866)
T ss_pred HHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 1111111111 122344566888999998763 11 2222333456788999998875 557788888999988
Q ss_pred HhhhcC
Q 005282 502 LATKAT 507 (704)
Q Consensus 502 L~~~~~ 507 (704)
|+..-.
T Consensus 542 LSsr~~ 547 (866)
T KOG1062|consen 542 LSSRFH 547 (866)
T ss_pred HHhhcc
Confidence 876543
No 64
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=9.5e-07 Score=92.44 Aligned_cols=318 Identities=14% Similarity=0.132 Sum_probs=209.1
Q ss_pred HHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcC--hhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHH
Q 005282 48 RAQIDILNSKFSSDETDRAAAKTASHALVEFAKN--EEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFA 125 (704)
Q Consensus 48 ~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~ 125 (704)
|.++..++......... .++..++.+++-++.+ |+..... -..++..+++-.....+ +..+|..|..+
T Consensus 128 p~li~~lv~nv~~~~~~-~~k~~slealGyice~i~pevl~~~-sN~iLtaIv~gmrk~e~--------s~~vRLaa~~a 197 (859)
T KOG1241|consen 128 PELIVTLVSNVGEEQAS-MVKESSLEALGYICEDIDPEVLEQQ-SNDILTAIVQGMRKEET--------SAAVRLAALNA 197 (859)
T ss_pred HHHHHHHHHhcccccch-HHHHHHHHHHHHHHccCCHHHHHHH-HhHHHHHHHhhccccCC--------chhHHHHHHHH
Confidence 55666666655433333 6788999999999884 5522221 23567777777777665 56899999999
Q ss_pred HHhhc-CCh-hhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc
Q 005282 126 LGLLA-VKP-EHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLK 203 (704)
Q Consensus 126 L~~l~-~~~-~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~ 203 (704)
|.|-. -.. .+-...-..=.++..+....+++. +++..|..+|..+..-..+.-........+..-+..++
T Consensus 198 L~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~--------~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amk 269 (859)
T KOG1241|consen 198 LYNSLEFTKANFNNEMERNYIMQVVCEATQSPDE--------EIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMK 269 (859)
T ss_pred HHHHHHHHHHhhccHhhhceeeeeeeecccCCcH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 98876 111 111111112234555555555544 99999999999998655554444444555666667778
Q ss_pred CCCHHHHHHHHHHHHHhccCCch---------------hhHHhH---hcCChHHHHHhhcC-------CCHHHHHHHHHH
Q 005282 204 FVDVKVQRAAAGALRTLAFKNDE---------------NKKLIV---ECNALPTLVLMLRS-------EDASVHFEAVGV 258 (704)
Q Consensus 204 ~~~~~~~~~a~~~L~~l~~~~~~---------------~~~~~~---~~~~i~~L~~lL~~-------~~~~v~~~a~~~ 258 (704)
++++++...++..=.++|...-+ ....+. -.+++|.|+++|.. ++...-..|..+
T Consensus 270 s~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~C 349 (859)
T KOG1241|consen 270 SDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVC 349 (859)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHH
Confidence 99999999998888877742111 001111 12568888888863 233566666666
Q ss_pred HHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHH
Q 005282 259 IGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEM 338 (704)
Q Consensus 259 L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~ 338 (704)
|.-.++.. ...++. .+++.+-.-++++++.-+..++.+++.+..+....+..-+-.++++.++.++.++.-.++..
T Consensus 350 L~l~A~~~---~D~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdT 425 (859)
T KOG1241|consen 350 LMLFAQCV---GDDIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDT 425 (859)
T ss_pred HHHHHHHh---cccchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcch
Confidence 66665331 122222 45555666778899999999999999988665566666667889999999999888889999
Q ss_pred HHHHHHHhhcCCchh--hhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcc
Q 005282 339 SAFALGRLAQDTHNQ--AGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLA 388 (704)
Q Consensus 339 a~~~L~~l~~~~~~~--~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~ 388 (704)
+.|+++.++..-... ......+.+..++.-|+ ..|.+..+++|++.+|+
T Consensus 426 aAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~La 476 (859)
T KOG1241|consen 426 AAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLA 476 (859)
T ss_pred HHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHH
Confidence 999999999764421 11111222333333332 47889999999999998
No 65
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.88 E-value=8.7e-08 Score=96.49 Aligned_cols=227 Identities=20% Similarity=0.242 Sum_probs=160.4
Q ss_pred CcHHHHHHHhhc-cCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhc------cCCcHHHHHHhcCCCHHHHHHHHHH
Q 005282 144 ALPHLVSLLKQY-KNGGNSRALSGVIRRAADAITNLAHENANIKTRVRV------EDGIPPLVELLKFVDVKVQRAAAGA 216 (704)
Q Consensus 144 ~l~~L~~lL~~~-~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~------~~~i~~L~~ll~~~~~~~~~~a~~~ 216 (704)
....++.+|+.. .. .+++.+.+..+..+..+++.....+.. .....++++++..+|..++..|+..
T Consensus 56 ~~~~~l~lL~~~~~~-------~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~i 128 (312)
T PF03224_consen 56 YASLFLNLLNKLSSN-------DDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFI 128 (312)
T ss_dssp ------HHHHHH----------HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCc-------HHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHH
Confidence 466777888776 32 399999999999999888766665555 2357888899999999999999999
Q ss_pred HHHhccCCchhhHHhHhcCChHHHHHhhcC----CCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHh-----c
Q 005282 217 LRTLAFKNDENKKLIVECNALPTLVLMLRS----EDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLL-----S 287 (704)
Q Consensus 217 L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll-----~ 287 (704)
+..+....+....... .+.++.++..+.+ ++.+.+..++.+|.++... +..+..+.+.++++.+..++ .
T Consensus 129 Lt~Ll~~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~-~~~R~~f~~~~~v~~l~~iL~~~~~~ 206 (312)
T PF03224_consen 129 LTSLLSQGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS-KEYRQVFWKSNGVSPLFDILRKQATN 206 (312)
T ss_dssp HHHHHTSTTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS-HHHHHHHHTHHHHHHHHHHHH-----
T ss_pred HHHHHHcCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc-chhHHHHHhcCcHHHHHHHHHhhccc
Confidence 9999864444333322 3456677777664 4567789999999999865 88899999999999999999 2
Q ss_pred --CCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCc--hhhhHHhhCCh
Q 005282 288 --SSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQS-PDSQLKEMSAFALGRLAQDTH--NQAGIAQDGGI 362 (704)
Q Consensus 288 --~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~~ 362 (704)
..+..++.+++.+++-++. +++....+...++++.|+.+++. ...++.+.+..++.|+..... ....++..|++
T Consensus 207 ~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l 285 (312)
T PF03224_consen 207 SNSSGIQLQYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLL 285 (312)
T ss_dssp ----HHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HH
T ss_pred CCCCchhHHHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHH
Confidence 2344568899999999975 66777778888899999999974 678899999999999998776 66667777666
Q ss_pred HHHHHhhcC--CChhHHHHH
Q 005282 363 LPLLKLLDS--KNGSLQHNA 380 (704)
Q Consensus 363 ~~L~~ll~~--~~~~v~~~a 380 (704)
+.+-.+... +|+++....
T Consensus 286 ~~l~~L~~rk~~Dedl~edl 305 (312)
T PF03224_consen 286 KTLQNLSERKWSDEDLTEDL 305 (312)
T ss_dssp HHHHHHHSS--SSHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHH
Confidence 555444432 577776544
No 66
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=5.9e-07 Score=84.17 Aligned_cols=294 Identities=17% Similarity=0.138 Sum_probs=194.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhH-hcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 005282 196 PPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIV-ECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVI 274 (704)
Q Consensus 196 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 274 (704)
.-++.++.+.+|.++..|..-+..++.. ..+.... +...++.+.+++...++ .+.|+.++.|+++. +..+..++
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~-~~l~~~ll 80 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK-EELRKKLL 80 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh-HHHHHHHH
Confidence 3478889999999999999999999853 2222222 33468888999987766 88899999999976 66666666
Q ss_pred HcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHh------cCChHHHHHhhCCCCH--HHHHHHHHHHHHh
Q 005282 275 LAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQ------RGAVRPLIEMLQSPDS--QLKEMSAFALGRL 346 (704)
Q Consensus 275 ~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~------~~~i~~L~~ll~~~~~--~v~~~a~~~L~~l 346 (704)
+. ++..++..+.++........+..|.|++..+......+.. .|.+.........+.. .--.+.+..++|+
T Consensus 81 ~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nl 159 (353)
T KOG2973|consen 81 QD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANL 159 (353)
T ss_pred HH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHH
Confidence 66 8888999999888888999999999999755443333221 3455555555544321 2235677889999
Q ss_pred hcCCchhhhHHhhCChHH-HHHhhcCCChhHHH-HHHHHHHHcccCCchhhHHHhhC--CcccccccccccccchHHHHH
Q 005282 347 AQDTHNQAGIAQDGGILP-LLKLLDSKNGSLQH-NAAFALYGLADNEDNVADLVRVG--GVQKLQDGEFTVQPTKDCVAR 422 (704)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~-L~~ll~~~~~~v~~-~a~~~L~~l~~~~~~~~~l~~~g--~i~~l~~~~~~~~~~~~~~~~ 422 (704)
++...+|..+.....++. .+.-+.+.+..+|+ ..+++|.|.+-+......+...+ .++.++-..... .
T Consensus 160 s~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagp--------e 231 (353)
T KOG2973|consen 160 SQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGP--------E 231 (353)
T ss_pred hhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCc--------c
Confidence 998888887766653322 22223345556655 67789999998777766666522 112211100000 0
Q ss_pred HHHHHHHHhhcchhHHHHHHHh-----hccHHHHHHHHHHHHhccCCCccceeeecCCcHHHHHHHHhh-cchhhhhhHH
Q 005282 423 TLKRLEEKVHGRVLNHLLYLLR-----VADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLES-TSVKQREESS 496 (704)
Q Consensus 423 ~~~~~~~~~~~~~~~~L~~ll~-----~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~~~~~a~ 496 (704)
.+.. +.+ .-++.=++++. .+++.++.....+|.-||.....|..+...|+-+.+-.+-.. .+++++.++-
T Consensus 232 e~sE--Edm--~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~ded~~~ace 307 (353)
T KOG2973|consen 232 ELSE--EDM--AKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEEDEDIREACE 307 (353)
T ss_pred ccCH--HHH--hcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHH
Confidence 0000 000 01122224442 457899999999999999999999998777766666655443 8888888887
Q ss_pred HHHHHHhhhcC
Q 005282 497 VALYKLATKAT 507 (704)
Q Consensus 497 ~~L~~L~~~~~ 507 (704)
.....|.+.-+
T Consensus 308 ~vvq~Lv~~e~ 318 (353)
T KOG2973|consen 308 QVVQMLVRLEP 318 (353)
T ss_pred HHHHHHHhccc
Confidence 77777777554
No 67
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.81 E-value=1.1e-07 Score=95.77 Aligned_cols=228 Identities=16% Similarity=0.216 Sum_probs=161.0
Q ss_pred ChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHc------CCcHHHHHHHhhccCCCCCcchh
Q 005282 93 AVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDT------GALPHLVSLLKQYKNGGNSRALS 165 (704)
Q Consensus 93 ~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~------g~l~~L~~lL~~~~~~~~~~~~~ 165 (704)
....++.+|+..+. ++++....+..+..+. .++...+.+... ....++++++..++.
T Consensus 56 ~~~~~l~lL~~~~~--------~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~-------- 119 (312)
T PF03224_consen 56 YASLFLNLLNKLSS--------NDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDS-------- 119 (312)
T ss_dssp ------HHHHHH-----------HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSH--------
T ss_pred HHHHHHHHHHHccC--------cHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCH--------
Confidence 35566666666522 3589999999999999 787777766652 256777777776644
Q ss_pred HHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcC----CCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHH
Q 005282 166 GVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKF----VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLV 241 (704)
Q Consensus 166 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 241 (704)
.+...++..|..+....+....... .+.++.+++++.+ ++.+++..++.+|.++.. .+..|..+.+.++++.+.
T Consensus 120 ~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~ 197 (312)
T PF03224_consen 120 FIQLKAAFILTSLLSQGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLF 197 (312)
T ss_dssp HHHHHHHHHHHHHHTSTTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHH
Confidence 8999999999999865544333211 4566777777764 456778999999999996 899999999999999999
Q ss_pred Hhh-----c--CCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcC-CChhHHHHHHHHHHHHhccCCc-ch
Q 005282 242 LML-----R--SEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSS-SCSESKREAALLLGQFAAADSN-SK 312 (704)
Q Consensus 242 ~lL-----~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~-~~ 312 (704)
.++ . ..+..++..++.+++.++.+ +.....+...+.++.|+.+++. ....+.+-++.++.|+....+. ..
T Consensus 198 ~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~ 276 (312)
T PF03224_consen 198 DILRKQATNSNSSGIQLQYQALLCLWLLSFE-PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNI 276 (312)
T ss_dssp HHHH---------HHHHHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHH
T ss_pred HHHHhhcccCCCCchhHHHHHHHHHHHHhcC-HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHH
Confidence 999 2 34568899999999999976 6777778888899999999974 4566889999999999975554 66
Q ss_pred HHHHhcCChHHHHHhhCC--CCHHHHHHH
Q 005282 313 VHIVQRGAVRPLIEMLQS--PDSQLKEMS 339 (704)
Q Consensus 313 ~~~~~~~~i~~L~~ll~~--~~~~v~~~a 339 (704)
..++..|+++.+-.+... +|+++.+..
T Consensus 277 ~~mv~~~~l~~l~~L~~rk~~Dedl~edl 305 (312)
T PF03224_consen 277 ELMVLCGLLKTLQNLSERKWSDEDLTEDL 305 (312)
T ss_dssp HHHHHH-HHHHHHHHHSS--SSHHHHHHH
T ss_pred HHHHHccHHHHHHHHhcCCCCCHHHHHHH
Confidence 777777777777776643 577776653
No 68
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.80 E-value=2.6e-08 Score=94.84 Aligned_cols=137 Identities=23% Similarity=0.307 Sum_probs=114.3
Q ss_pred eEeehhHHHHhhcCHHHHHhhcCCCCCCC-CC---ceEcCCCCHHHHHHHHHHHhcCccccChhhHHHHHHHHhhhChH-
Q 005282 545 KQFYAHRICLLASSDAFRAMFDGGYKEKN-AK---DVEIPNIRWNVFELMMRFIYTGNVDVSVDIAQDLLRAADQYLLE- 619 (704)
Q Consensus 545 ~~~~~hk~iL~~~s~~f~~~f~~~~~e~~-~~---~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~ll~~A~~~~~~- 619 (704)
..+|||+.+++ |++||+.||.|+|.|++ .. ...+|.....+.+..++|+|+++.++.++-+.+++-.|+++.+.
T Consensus 301 ~RyP~hla~i~-R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal~~ 379 (516)
T KOG0511|consen 301 DRYPAHLARIL-RVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLALAD 379 (516)
T ss_pred ccccHHHHHHH-HHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhhhh
Confidence 45999999999 89999999999999854 22 34456778899999999999999999999999999999999765
Q ss_pred -h-HHHHHHHHHHh---hCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCChhhhccchhcH
Q 005282 620 -G-LKRLCEYSIAQ---IISVENIMLMYELSEAYNATTLKQSCILFILEKFDKMRNKPWFFRLIRCVL 682 (704)
Q Consensus 620 -~-l~~~c~~~l~~---~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~L~~~~~ 682 (704)
. |+......|.+ .++.-++.+++..+...+..+|...+..|+.+|+..+...|+|...-+...
T Consensus 380 dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~l~~dPe~~~~~~~s~ 447 (516)
T KOG0511|consen 380 DRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEARHLLLLLPDPEGDSSLRTSV 447 (516)
T ss_pred hhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCchhhHHHHhcc
Confidence 2 55555555543 455667899999999999999999999999999999999999987644433
No 69
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.79 E-value=1.4e-06 Score=85.33 Aligned_cols=340 Identities=12% Similarity=0.156 Sum_probs=224.5
Q ss_pred CcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhh------ccCCcHHHHHHhcCCCHHHHHHHHHHH
Q 005282 144 ALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVR------VEDGIPPLVELLKFVDVKVQRAAAGAL 217 (704)
Q Consensus 144 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~------~~~~i~~L~~ll~~~~~~~~~~a~~~L 217 (704)
.+..++.+++.... ++...+.+..+..+-..+...-..+. +...-...+.++...+.-+...+.+.+
T Consensus 66 ~v~~fi~LlS~~~k-------dd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Il 138 (442)
T KOG2759|consen 66 YVKTFINLLSHIDK-------DDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRIL 138 (442)
T ss_pred HHHHHHHHhchhhh-------HHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHH
Confidence 45567777766554 26777777777777654433222111 122356778888899998888888888
Q ss_pred HHhccCCchhh---HHhHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhc--CCCh
Q 005282 218 RTLAFKNDENK---KLIVECNALPTLVLMLRS-EDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLS--SSCS 291 (704)
Q Consensus 218 ~~l~~~~~~~~---~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~--~~~~ 291 (704)
..++...+..- +.-.. ...|-..+++ .+..-...++++|-.+... ++.+..++..+++..++..+. ..+.
T Consensus 139 s~la~~g~~~~~~~e~~~~---~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~~v~adg~~~l~~~l~s~~~~~ 214 (442)
T KOG2759|consen 139 SKLACFGNCKMELSELDVY---KGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRYAFVIADGVSLLIRILASTKCGF 214 (442)
T ss_pred HHHHHhccccccchHHHHH---HHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchhheeeecCcchhhHHHHhccCcch
Confidence 88875222111 11111 2334444544 6677788889999999877 677888888888898888883 3456
Q ss_pred hHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCch-------hhhHHhhCChH
Q 005282 292 ESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQS-PDSQLKEMSAFALGRLAQDTHN-------QAGIAQDGGIL 363 (704)
Q Consensus 292 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~-------~~~~~~~~~~~ 363 (704)
.++...+.+++-++. ++.....+...+.++.|..++++ ...+|...++.++.|+....+. ...++..+..
T Consensus 215 QlQYqsifciWlLtF-n~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~- 292 (442)
T KOG2759|consen 215 QLQYQSIFCIWLLTF-NPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVL- 292 (442)
T ss_pred hHHHHHHHHHHHhhc-CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCch-
Confidence 778899999998875 55555666667999999999986 4678889999999999976632 2334544444
Q ss_pred HHHHhhcC---CChhHHHHHHHH-------HHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHh--
Q 005282 364 PLLKLLDS---KNGSLQHNAAFA-------LYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKV-- 431 (704)
Q Consensus 364 ~L~~ll~~---~~~~v~~~a~~~-------L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~-- 431 (704)
+-++.|.. +|+++....-.. ...|++..+...++. .|.++--. .+... +.........
T Consensus 293 k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~-sG~L~WSP----~Hk~e-----~FW~eNa~rlne 362 (442)
T KOG2759|consen 293 KTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELR-SGRLEWSP----VHKSE-----KFWRENADRLNE 362 (442)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH-hCCcCCCc----ccccc-----chHHHhHHHHhh
Confidence 44555533 456554443332 233344334443332 34433211 11111 0111111111
Q ss_pred -hcchhHHHHHHHhhcc-HHHHHHHHHHHHhccC-CCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282 432 -HGRVLNHLLYLLRVAD-RAVKRRVTLALAHLCA-PDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKA 506 (704)
Q Consensus 432 -~~~~~~~L~~ll~~~~-~~v~~~a~~~L~~l~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 506 (704)
.-.++..|+.++...+ |.+..-||.-|+.+.+ .|..+..+.+-||-+.+.+++.+++|+|+..|..|+..|..+.
T Consensus 363 nnyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~~ 440 (442)
T KOG2759|consen 363 NNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVHN 440 (442)
T ss_pred ccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhhc
Confidence 2357888999997755 8888889999999966 7788888888899999999999999999999999998887643
No 70
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.77 E-value=3e-07 Score=98.99 Aligned_cols=237 Identities=17% Similarity=0.126 Sum_probs=190.9
Q ss_pred HHHHHHHHHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHc
Q 005282 65 RAAAKTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDT 142 (704)
Q Consensus 65 ~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~ 142 (704)
+..+..|+..|...-. +|.....-..-|+.|.++++|+++.. +++.--+.+.++|. -++.++..+++.
T Consensus 484 QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~----------ELrpiLVFIWAKILAvD~SCQ~dLvKe 553 (1387)
T KOG1517|consen 484 QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSAR----------ELRPILVFIWAKILAVDPSCQADLVKE 553 (1387)
T ss_pred HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchH----------hhhhhHHHHHHHHHhcCchhHHHHHhc
Confidence 4567888888888777 89888888888999999999999987 99999999999998 889999999999
Q ss_pred CCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCC-CHHHHHHHHHHHHHhc
Q 005282 143 GALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFV-DVKVQRAAAGALRTLA 221 (704)
Q Consensus 143 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~ 221 (704)
++-..+++.|.....-+ ++-+..|+..|+.++.+-+..+......+.+...+..|.++ .+-++..++-+|+.|-
T Consensus 554 ~g~~YF~~vL~~~~~~~-----~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW 628 (1387)
T KOG1517|consen 554 NGYKYFLQVLDPSQAIP-----PEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLW 628 (1387)
T ss_pred cCceeEEEEecCcCCCC-----HHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHh
Confidence 99888888888732211 27888999999999987777788888888899999999985 7899999999999999
Q ss_pred cCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCC----hhhHHHH-----------HHcCCH----HHH
Q 005282 222 FKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSS----PSIKKEV-----------ILAGAL----QPV 282 (704)
Q Consensus 222 ~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~----~~~~~~~-----------~~~~~l----~~L 282 (704)
.+.++.|-.=.+.+....|..+|.++-++||..|+.+|+.+..+. ++....+ .....+ -.+
T Consensus 629 ~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~l 708 (1387)
T KOG1517|consen 629 EDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSL 708 (1387)
T ss_pred hhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHH
Confidence 888888888888889999999999999999999999999988642 2222111 011122 255
Q ss_pred HHHhcCCChhHHHHHHHHHHHHhccCCcchHHHH
Q 005282 283 IGLLSSSCSESKREAALLLGQFAAADSNSKVHIV 316 (704)
Q Consensus 283 ~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 316 (704)
+.+++.+.+-++.+.+.+|..+..++......+.
T Consensus 709 l~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va 742 (1387)
T KOG1517|consen 709 LALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVA 742 (1387)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHh
Confidence 6667778888888888888888776655444333
No 71
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.75 E-value=4.5e-07 Score=91.57 Aligned_cols=354 Identities=16% Similarity=0.148 Sum_probs=220.6
Q ss_pred hCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHH
Q 005282 90 DNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIR 169 (704)
Q Consensus 90 ~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~ 169 (704)
-.+++++.+..+.+.+. .+|..||..+.|++.................++++..+.+. -..
T Consensus 82 ~~~iv~Pv~~cf~D~d~----------~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~---------~V~ 142 (675)
T KOG0212|consen 82 LEKIVPPVLNCFSDQDS----------QVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQ---------NVR 142 (675)
T ss_pred HHHhhHHHHHhccCccc----------eeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCcc---------ccc
Confidence 45679999999999876 89999999999999322222222222344556666555443 233
Q ss_pred HHHHHHHHhhhcChhhhh-hhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHh-HhcCChHHHHHhhcCC
Q 005282 170 RAADAITNLAHENANIKT-RVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLI-VECNALPTLVLMLRSE 247 (704)
Q Consensus 170 ~a~~~L~~l~~~~~~~~~-~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~~i~~L~~lL~~~ 247 (704)
.++..+-.+..+-..-+. .+.-.+++|.|-.-+...++..|...+.-+..+-. .| ..+.+ .-...++-|..+|.++
T Consensus 143 ~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds-~P-~~~m~~yl~~~ldGLf~~LsD~ 220 (675)
T KOG0212|consen 143 GGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDS-VP-DLEMISYLPSLLDGLFNMLSDS 220 (675)
T ss_pred cHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhc-CC-cHHHHhcchHHHHHHHHHhcCC
Confidence 455555555432111111 34445667777777777899999988888887753 33 33333 3445678888999999
Q ss_pred CHHHHHHHHHHHHHHhcC---ChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHH
Q 005282 248 DASVHFEAVGVIGNLVHS---SPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPL 324 (704)
Q Consensus 248 ~~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 324 (704)
+++|+..+=.++.++... .|.. +--...++.++.-+.++++.++..|+.-+..+..-.+ ......-.|++..+
T Consensus 221 s~eVr~~~~t~l~~fL~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g-~~~l~~~s~il~~i 296 (675)
T KOG0212|consen 221 SDEVRTLTDTLLSEFLAEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPG-RDLLLYLSGILTAI 296 (675)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCC-cchhhhhhhhhhhc
Confidence 999998777766665422 1221 1123567888888999999999988877777764333 22334446777888
Q ss_pred HHhhCCCCHH-HHHHHHH---HHHHhhcCCchhhhHHhh-CChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHHHh
Q 005282 325 IEMLQSPDSQ-LKEMSAF---ALGRLAQDTHNQAGIAQD-GGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVR 399 (704)
Q Consensus 325 ~~ll~~~~~~-v~~~a~~---~L~~l~~~~~~~~~~~~~-~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~ 399 (704)
+..+.+.+.. ++..+.. .+..++........ +.. ..+..+.+.+.+...+.+-.++.-+..+-....+.- ++.
T Consensus 297 Lpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql-~~h 374 (675)
T KOG0212|consen 297 LPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQL-LVH 374 (675)
T ss_pred ccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchh-hhh
Confidence 8888776553 4443332 23334433333322 333 345667778888888888888887776643221111 110
Q ss_pred hCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCccceeeecCCcHHH
Q 005282 400 VGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLEL 479 (704)
Q Consensus 400 ~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~ 479 (704)
...+.+.|+.-+.+.++++...+...++++|.+...... ...+..
T Consensus 375 --------------------------------~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~---~~fl~s 419 (675)
T KOG0212|consen 375 --------------------------------NDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNL---RKFLLS 419 (675)
T ss_pred --------------------------------ccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccH---HHHHHH
Confidence 123566788888999999999999999999887655411 122333
Q ss_pred HHHHHhhcchhhhhhHHHHHHHHhhh
Q 005282 480 LLGLLESTSVKQREESSVALYKLATK 505 (704)
Q Consensus 480 L~~ll~~~~~~~~~~a~~~L~~L~~~ 505 (704)
|+++......-+..++.-.+.+||..
T Consensus 420 LL~~f~e~~~~l~~Rg~lIIRqlC~l 445 (675)
T KOG0212|consen 420 LLEMFKEDTKLLEVRGNLIIRQLCLL 445 (675)
T ss_pred HHHHHhhhhHHHHhhhhHHHHHHHHH
Confidence 44444455555677777777777663
No 72
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.66 E-value=1e-05 Score=82.00 Aligned_cols=425 Identities=13% Similarity=0.048 Sum_probs=233.1
Q ss_pred chhhHHHHHHHHHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHH
Q 005282 61 DETDRAAAKTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQI 138 (704)
Q Consensus 61 ~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~ 138 (704)
+.++..++..+..+|..+.. .-..-+...+.-......+.+++++. ++..+|......+| ..-+.--.
T Consensus 231 q~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd----------~va~qavEfWsticeEeid~~~e 300 (858)
T COG5215 231 QGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQND----------EVAIQAVEFWSTICEEEIDGEME 300 (858)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch----------HHHHHHHHHHHHHHHHHhhhHHH
Confidence 34455567778888877765 33444444454455566777888876 99999999998888 22221111
Q ss_pred HH----------------HcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHh
Q 005282 139 IV----------------DTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELL 202 (704)
Q Consensus 139 ~~----------------~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll 202 (704)
.. -.+++|.|+++|.+...+. ..++|.+-..|..+|--.+... ...+.+. ++..+-+-+
T Consensus 301 ~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~-~~DdWn~smaA~sCLqlfaq~~---gd~i~~p-Vl~FvEqni 375 (858)
T COG5215 301 DKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDY-YGDDWNPSMAASSCLQLFAQLK---GDKIMRP-VLGFVEQNI 375 (858)
T ss_pred HhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCc-cccccchhhhHHHHHHHHHHHh---hhHhHHH-HHHHHHHhc
Confidence 11 1347899999998865433 3345777777777766655311 1222222 334444556
Q ss_pred cCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHH
Q 005282 203 KFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPV 282 (704)
Q Consensus 203 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L 282 (704)
++++..-++.+..+++.+-.+..+....-+-...+|.+...+.++.-.++..++|+++.++.+ ....+-..|-++..
T Consensus 376 ~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~---va~~i~p~~Hl~~~ 452 (858)
T COG5215 376 RSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADH---VAMIISPCGHLVLE 452 (858)
T ss_pred cCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHH---HHHhcCccccccHH
Confidence 688999999999999999875555444444556788888888888888999999999999844 23333334444444
Q ss_pred HHHhc---CCChhHHHHHHHHHHHHhccCCcch---HHHHh---cCChHHHHHhh--CCCCHHHHHHHHHHHHHhhcCCc
Q 005282 283 IGLLS---SSCSESKREAALLLGQFAAADSNSK---VHIVQ---RGAVRPLIEML--QSPDSQLKEMSAFALGRLAQDTH 351 (704)
Q Consensus 283 ~~ll~---~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~---~~~i~~L~~ll--~~~~~~v~~~a~~~L~~l~~~~~ 351 (704)
+.... .+++.+..++.|...|++.+-++.. ..++. ..++..|++.- ...+...|..+..+|+.+.....
T Consensus 453 vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~ 532 (858)
T COG5215 453 VSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICP 532 (858)
T ss_pred HHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcc
Confidence 33221 2356778899999999886543222 11111 12233333332 13456677778888887764332
Q ss_pred hhhhHHhhCC-----------hHHHHHhh--------cCCChhHHHHHHHHHHHcccCCchhhH-HHhhCCcccccc--c
Q 005282 352 NQAGIAQDGG-----------ILPLLKLL--------DSKNGSLQHNAAFALYGLADNEDNVAD-LVRVGGVQKLQD--G 409 (704)
Q Consensus 352 ~~~~~~~~~~-----------~~~L~~ll--------~~~~~~v~~~a~~~L~~l~~~~~~~~~-l~~~g~i~~l~~--~ 409 (704)
....-.-.|. +..+-+.+ ++-..+...-...+++..-.+-+.... +.+ -.+..+.. .
T Consensus 533 d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~-Lf~r~les~~~ 611 (858)
T COG5215 533 DAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLME-LFIRILESTKP 611 (858)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHH-HHHHHHhccCC
Confidence 1110000000 00000000 000112222222222322222222211 111 01111111 1
Q ss_pred ccccccchHHHHHH---HHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCccceeeecCCcHHHHHHHHhh
Q 005282 410 EFTVQPTKDCVART---LKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLES 486 (704)
Q Consensus 410 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~~ 486 (704)
.+......-.++.. +.+.-++..+.++|.|..-+...+..+...|...++.|++.-+.........-...|++.+++
T Consensus 612 t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss 691 (858)
T COG5215 612 TTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSS 691 (858)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC
Confidence 11111112223333 333334556778899999998888888889999999997654433333333446678888876
Q ss_pred --cchhhhhhHHHHHHHHhh
Q 005282 487 --TSVKQREESSVALYKLAT 504 (704)
Q Consensus 487 --~~~~~~~~a~~~L~~L~~ 504 (704)
.+.+++-....+...++.
T Consensus 692 ~~~~R~lKPaiLSvFgDIAl 711 (858)
T COG5215 692 EATHRDLKPAILSVFGDIAL 711 (858)
T ss_pred hhhccccchHHHHHHHHHHH
Confidence 334455444444454444
No 73
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=1.7e-05 Score=83.68 Aligned_cols=279 Identities=16% Similarity=0.203 Sum_probs=203.0
Q ss_pred CCchhhHHHHHHHHHHHHHhhcCh-----------------hHHHHHHh-CCChHHHHhhccCCCcCCCCCCCCchHHHH
Q 005282 59 SSDETDRAAAKTASHALVEFAKNE-----------------EIVSLIVD-NGAVPALVEHLQTPPQLTNAQIPYEHEVEK 120 (704)
Q Consensus 59 ~~~~~~~~~~~~a~~~L~~l~~~~-----------------~~~~~l~~-~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~ 120 (704)
..+-.++.+...++.++..+..+. +..+.++. .+.|..|+..+...+- .||.
T Consensus 71 ~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF----------~VR~ 140 (970)
T KOG0946|consen 71 QRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDF----------HVRL 140 (970)
T ss_pred hhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhch----------hhhh
Confidence 334444556677777777765421 34455553 4888999999988653 8999
Q ss_pred HHHHHHHhhc--CChhhHHHHHHc-CCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHH
Q 005282 121 ECAFALGLLA--VKPEHQQIIVDT-GALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPP 197 (704)
Q Consensus 121 ~a~~~L~~l~--~~~~~~~~~~~~-g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 197 (704)
.++..+.++. ..++.++.+... -+|..++.+|.+... .+|..++..|..+..+++..+..+.-.+++..
T Consensus 141 ~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE--------~IRNe~iLlL~eL~k~n~~IQKlVAFENaFer 212 (970)
T KOG0946|consen 141 YAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSRE--------PIRNEAILLLSELVKDNSSIQKLVAFENAFER 212 (970)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhh--------hhchhHHHHHHHHHccCchHHHHHHHHHHHHH
Confidence 9999999998 567788877665 589999999999886 78889999999999999999999999999999
Q ss_pred HHHHhcCC----CHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcC---CCHH----------HHHHHHHHHH
Q 005282 198 LVELLKFV----DVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRS---EDAS----------VHFEAVGVIG 260 (704)
Q Consensus 198 L~~ll~~~----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~---~~~~----------v~~~a~~~L~ 260 (704)
|+.++... ..-|..-++..|.||..++..++..+.+.+.+|.|.++|.. .+.+ -...++.++.
T Consensus 213 LfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr 292 (970)
T KOG0946|consen 213 LFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVR 292 (970)
T ss_pred HHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHH
Confidence 99999832 23578889999999999899999999999999999988862 2311 1224455555
Q ss_pred HHhcCC------hhhHHHHHHcCCHHHHHHHhcCC--ChhHHHHHHHHHHHHhccCCcchHHHHhcC---------Ch-H
Q 005282 261 NLVHSS------PSIKKEVILAGALQPVIGLLSSS--CSESKREAALLLGQFAAADSNSKVHIVQRG---------AV-R 322 (704)
Q Consensus 261 ~l~~~~------~~~~~~~~~~~~l~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~---------~i-~ 322 (704)
.+..-. ..+...+...+++..|..++-++ ..+++..+.-++++...++..++..+.+.. .+ -
T Consensus 293 ~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivv 372 (970)
T KOG0946|consen 293 SLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVV 372 (970)
T ss_pred HhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhH
Confidence 554321 12334566788999999888766 456788888899999988887777776531 11 1
Q ss_pred HHHHhhC-CCCHHHHHHHHHHHHHhhc-CCchhhh
Q 005282 323 PLIEMLQ-SPDSQLKEMSAFALGRLAQ-DTHNQAG 355 (704)
Q Consensus 323 ~L~~ll~-~~~~~v~~~a~~~L~~l~~-~~~~~~~ 355 (704)
.++.+.. ...+..|.++..++..+.. +.+.+..
T Consensus 373 llmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~~ 407 (970)
T KOG0946|consen 373 LLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQRK 407 (970)
T ss_pred HHHHHHhccCCchHHHHHHHHHHHHHhcchhhHHH
Confidence 2233332 3567788888888876664 3444433
No 74
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.63 E-value=6e-05 Score=76.67 Aligned_cols=412 Identities=19% Similarity=0.146 Sum_probs=228.7
Q ss_pred hHHHHH-HHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhCCC----hHHHHhhccCCCcCCCCCCCCc
Q 005282 41 QDLVQD-IRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGA----VPALVEHLQTPPQLTNAQIPYE 115 (704)
Q Consensus 41 ~~~~~~-~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~----i~~L~~lL~~~~~~~~~~~~~d 115 (704)
+.+.+. ...+..++...++. +.+..++..++.+|.+-.. .++..+...+- +...++.-+.+ |
T Consensus 168 e~li~~sN~il~aiv~ga~k~-et~~avRLaaL~aL~dsl~--fv~~nf~~E~erNy~mqvvceatq~~----------d 234 (858)
T COG5215 168 EDLIQMSNVILFAIVMGALKN-ETTSAVRLAALKALMDSLM--FVQGNFCYEEERNYFMQVVCEATQGN----------D 234 (858)
T ss_pred HHHHHHhhHHHHHHHHhhccc-CchHHHHHHHHHHHHHHHH--HHHHhhcchhhhchhheeeehhccCC----------c
Confidence 444444 44444455444443 4455578888888877221 12222222222 34444444444 4
Q ss_pred hHHHHHHHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhh-----
Q 005282 116 HEVEKECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRV----- 189 (704)
Q Consensus 116 ~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~----- 189 (704)
.+++..|..+|.++- -.=.+-+...+.-......+.++++++ ++..+++..-+.+|.+.-+.....
T Consensus 235 ~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd--------~va~qavEfWsticeEeid~~~e~~~~pe 306 (858)
T COG5215 235 EELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQND--------EVAIQAVEFWSTICEEEIDGEMEDKYLPE 306 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch--------HHHHHHHHHHHHHHHHHhhhHHHHhhccc
Confidence 599999999999998 333333344444445566677777776 888888888888885332221111
Q ss_pred -----------hccCCcHHHHHHhcC-------CCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHH
Q 005282 190 -----------RVEDGIPPLVELLKF-------VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASV 251 (704)
Q Consensus 190 -----------~~~~~i~~L~~ll~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v 251 (704)
...+++|.|+.+|.. +++.+-..|..||...+.. ....+.+. ++..+-+-+++++..-
T Consensus 307 ~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~---~gd~i~~p-Vl~FvEqni~~~~w~n 382 (858)
T COG5215 307 VPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQL---KGDKIMRP-VLGFVEQNIRSESWAN 382 (858)
T ss_pred CchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHH---hhhHhHHH-HHHHHHHhccCchhhh
Confidence 123468899999974 3456666677777666541 11122222 4445555677889999
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhh-C-
Q 005282 252 HFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEML-Q- 329 (704)
Q Consensus 252 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~- 329 (704)
++.++.+++.+-.+..+....-.-...+|.+...+.++.-.+...++|+++.++.+-+. .+-..|-++..+..+ .
T Consensus 383 reaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~---~i~p~~Hl~~~vsa~liG 459 (858)
T COG5215 383 REAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAM---IISPCGHLVLEVSASLIG 459 (858)
T ss_pred HHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHH---hcCccccccHHHHHHHhh
Confidence 99999999999876544333333456788888888888888899999999999853211 122223333333322 1
Q ss_pred -CCCHHHHHHHHHHHHHhhcCCchhh---hHHhhCChHHHHHhh------cCCChhHHHHHHHHHHHccc-CCchhhHHH
Q 005282 330 -SPDSQLKEMSAFALGRLAQDTHNQA---GIAQDGGILPLLKLL------DSKNGSLQHNAAFALYGLAD-NEDNVADLV 398 (704)
Q Consensus 330 -~~~~~v~~~a~~~L~~l~~~~~~~~---~~~~~~~~~~L~~ll------~~~~~~v~~~a~~~L~~l~~-~~~~~~~l~ 398 (704)
.+.+.+..+++|...|++.+-.... .-.-....+.++.-| ...+.+.|..+..+|+.+.. .++....+.
T Consensus 460 l~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~ 539 (858)
T COG5215 460 LMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDIL 539 (858)
T ss_pred hhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHH
Confidence 2456777889999999986522111 111111222233222 12355677788888888764 333333322
Q ss_pred hhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhcc----HHHHHHHHHHHHhccC-CCccceeeec
Q 005282 399 RVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVAD----RAVKRRVTLALAHLCA-PDDCKTIFID 473 (704)
Q Consensus 399 ~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~----~~v~~~a~~~L~~l~~-~~~~~~~l~~ 473 (704)
. |... ....++++ .+..+-+++...| .+++.+-+..|..+.+ ....-.. .+
T Consensus 540 a-~~~~-----------------~~~~kl~~-----~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~-v~ 595 (858)
T COG5215 540 A-GFYD-----------------YTSKKLDE-----CISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIED-VE 595 (858)
T ss_pred H-HHHH-----------------HHHHHHHH-----HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCccc-HH
Confidence 1 1111 11222222 2222223333332 5677777778777733 2221111 12
Q ss_pred CCcHHHHHHHHhhcchh-hhhhHHHHHHHHhh
Q 005282 474 NNGLELLLGLLESTSVK-QREESSVALYKLAT 504 (704)
Q Consensus 474 ~~~i~~L~~ll~~~~~~-~~~~a~~~L~~L~~ 504 (704)
.-.+..+++++++..+. +......++.+|+.
T Consensus 596 D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~ 627 (858)
T COG5215 596 DQLMELFIRILESTKPTTAFGDVYTAISALST 627 (858)
T ss_pred HHHHHHHHHHHhccCCchhhhHHHHHHHHHHH
Confidence 23577888888876433 33344445555544
No 75
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=3.5e-05 Score=72.94 Aligned_cols=355 Identities=16% Similarity=0.169 Sum_probs=232.5
Q ss_pred hHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChh--hHH--HHHHcCCcHHHHHHHhhccCCCCCcchhHHH
Q 005282 94 VPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPE--HQQ--IIVDTGALPHLVSLLKQYKNGGNSRALSGVI 168 (704)
Q Consensus 94 i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~--~~~--~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~ 168 (704)
++.|-.-|..++. .|+..++..++.+. +... ... .+++.|.++.++..+-..++ ++.
T Consensus 84 mpdLQrGLiadda----------sVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd--------eVA 145 (524)
T KOG4413|consen 84 MPDLQRGLIADDA----------SVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD--------EVA 145 (524)
T ss_pred hHHHHhcccCCcc----------hhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH--------HHH
Confidence 4555555555544 79999999999998 3332 222 35578899999998887776 899
Q ss_pred HHHHHHHHHhhhcChhhhhhhhccCCcHH--HHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcC
Q 005282 169 RRAADAITNLAHENANIKTRVRVEDGIPP--LVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRS 246 (704)
Q Consensus 169 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~--L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~ 246 (704)
..|...+..++. .+..-..++....... +..+....+.-.|...+..+..+..-+++........|.+..|..-+.-
T Consensus 146 kAAiesikrial-fpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkG 224 (524)
T KOG4413|consen 146 KAAIESIKRIAL-FPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKG 224 (524)
T ss_pred HHHHHHHHHHHh-cHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcC
Confidence 999999999986 4555666777666554 3444445666778888888888877788888888889999988887764
Q ss_pred -CCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChh--HHHHHHHHHHHHhccCCcchHHHHhc-----
Q 005282 247 -EDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSE--SKREAALLLGQFAAADSNSKVHIVQR----- 318 (704)
Q Consensus 247 -~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~--~~~~a~~~L~~l~~~~~~~~~~~~~~----- 318 (704)
.|.-|+..++.....++.. +..++.+.+.|+++.+..++...+.+ -.-.+....+.+.. +.+...+...
T Consensus 225 teDtLVianciElvteLaet-eHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffg--keaimdvseeaicea 301 (524)
T KOG4413|consen 225 TEDTLVIANCIELVTELAET-EHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFG--KEAIMDVSEEAICEA 301 (524)
T ss_pred CcceeehhhHHHHHHHHHHH-hhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhc--chHHhhcCHHHHHHH
Confidence 7788888999999999855 55667777899999999999654333 33345555444432 1222222122
Q ss_pred --CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCC--hHH-HHHhhcCCChhHHHHHHHHHHHcccCCch
Q 005282 319 --GAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGG--ILP-LLKLLDSKNGSLQHNAAFALYGLADNEDN 393 (704)
Q Consensus 319 --~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~--~~~-L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 393 (704)
-.++....+....|+..++.|..+++.+.++.++...+...|. ... +.+..+.....-+..+..+|.++++.-.-
T Consensus 302 liiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrl 381 (524)
T KOG4413|consen 302 LIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRL 381 (524)
T ss_pred HHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccC
Confidence 2344455566778999999999999999999988887777665 333 33444444445677888888888762211
Q ss_pred h-hHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccC-CCccceee
Q 005282 394 V-ADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCA-PDDCKTIF 471 (704)
Q Consensus 394 ~-~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~l 471 (704)
. .++........ .+|. .+........-+.+..++.++..+.++++.++..++..++. +.-.+.++
T Consensus 382 kpeqitDgkaeer-----------lrcl--ifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaqPWalkeif 448 (524)
T KOG4413|consen 382 KPEQITDGKAEER-----------LRCL--IFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQPWALKEIF 448 (524)
T ss_pred ChhhccccHHHHH-----------HHHH--HHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCcHHHHHHh
Confidence 1 11111111111 1111 11111111111344556777788899999999999999954 55555666
Q ss_pred ecCCcHHHHHHH
Q 005282 472 IDNNGLELLLGL 483 (704)
Q Consensus 472 ~~~~~i~~L~~l 483 (704)
...+.|......
T Consensus 449 akeefieiVtDa 460 (524)
T KOG4413|consen 449 AKEEFIEIVTDA 460 (524)
T ss_pred cCccceeeeccc
Confidence 555555544443
No 76
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=3.1e-06 Score=85.65 Aligned_cols=321 Identities=16% Similarity=0.125 Sum_probs=216.1
Q ss_pred HHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHH
Q 005282 140 VDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRT 219 (704)
Q Consensus 140 ~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~ 219 (704)
.-.+.+++++..+.+.+. .++.+||..+.|++.- ...........+...+.++..+.+..++..| ..+-.
T Consensus 81 Y~~~iv~Pv~~cf~D~d~--------~vRyyACEsLYNiaKv-~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdR 150 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQDS--------QVRYYACESLYNIAKV-AKGEVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDR 150 (675)
T ss_pred HHHHhhHHHHHhccCccc--------eeeeHhHHHHHHHHHH-hccCcccchHHHHHHHHHHhcCCccccccHH-HHHHH
Confidence 345678999999988876 8999999999999852 2222223334455666676666766666433 33333
Q ss_pred hccCCc-hhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHH
Q 005282 220 LAFKND-ENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAA 298 (704)
Q Consensus 220 l~~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~ 298 (704)
+..+-. +....+--.+.+|.|-.-+...++..|...+.-|..+-.. |...-.-.-..+++-|...|.+++.+++..+-
T Consensus 151 LikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~-P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~ 229 (675)
T KOG0212|consen 151 LIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV-PDLEMISYLPSLLDGLFNMLSDSSDEVRTLTD 229 (675)
T ss_pred HHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC-CcHHHHhcchHHHHHHHHHhcCCcHHHHHHHH
Confidence 322111 1111333344566666666678999999998888887544 33222222356788899999999999998877
Q ss_pred HHHHHHhcc---CCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChh
Q 005282 299 LLLGQFAAA---DSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGS 375 (704)
Q Consensus 299 ~~L~~l~~~---~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~ 375 (704)
.+++++... ++.. +--...++.++.-++++++.++..|..-+..+...........-.|.+..++.++.++.+.
T Consensus 230 t~l~~fL~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~ 306 (675)
T KOG0212|consen 230 TLLSEFLAEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEM 306 (675)
T ss_pred HHHHHHHHHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccc
Confidence 777766432 2222 1223578899999999999999999888888887776666666677778888888776663
Q ss_pred -HHHHHHH---HHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHH
Q 005282 376 -LQHNAAF---ALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVK 451 (704)
Q Consensus 376 -v~~~a~~---~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~ 451 (704)
++..+.. .|..+.+.+..... ++ .+.++..+...+..+..+.+
T Consensus 307 ~i~~~a~~~n~~l~~l~s~~~~~~~------id---------------------------~~~ii~vl~~~l~~~~~~tr 353 (675)
T KOG0212|consen 307 SIKEYAQMVNGLLLKLVSSERLKEE------ID---------------------------YGSIIEVLTKYLSDDREETR 353 (675)
T ss_pred cHHHHHHHHHHHHHHHHhhhhhccc------cc---------------------------hHHHHHHHHHHhhcchHHHH
Confidence 4443332 23334333322222 11 12256678888888999999
Q ss_pred HHHHHHHHhccCCCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhcC
Q 005282 452 RRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKAT 507 (704)
Q Consensus 452 ~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~ 507 (704)
..+..-+..|-...+++.........+.|+.-+.+.+.++-..+...+.+++.++.
T Consensus 354 i~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~ 409 (675)
T KOG0212|consen 354 IAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSN 409 (675)
T ss_pred HHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcc
Confidence 99998888886666666665566778888888888888999999999999999774
No 77
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.58 E-value=1.5e-06 Score=93.75 Aligned_cols=243 Identities=13% Similarity=0.151 Sum_probs=197.6
Q ss_pred hHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHH
Q 005282 94 VPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAA 172 (704)
Q Consensus 94 i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~ 172 (704)
+|.++++|-+. --|.+|+..|+... -++-....-..-|+.|.++++|.++.. +++-..+
T Consensus 474 LPiVLQVLLSQ------------vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~--------ELrpiLV 533 (1387)
T KOG1517|consen 474 LPIVLQVLLSQ------------VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSAR--------ELRPILV 533 (1387)
T ss_pred cchHHHHHHHH------------HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchH--------hhhhhHH
Confidence 67788887776 35778999999999 677777778888999999999999876 8888888
Q ss_pred HHHHHhhhcChhhhhhhhccCCcHHHHHHhcC-C--CHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCC-C
Q 005282 173 DAITNLAHENANIKTRVRVEDGIPPLVELLKF-V--DVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSE-D 248 (704)
Q Consensus 173 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~ 248 (704)
.+-+.+..-++.++..+++.++-...++.|.. + +++-+..|+.+|+.++.+.+..++...+.+.+...+..|+++ .
T Consensus 534 FIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~ 613 (1387)
T KOG1517|consen 534 FIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPE 613 (1387)
T ss_pred HHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCcc
Confidence 88888776678899999999998888888875 2 468889999999999988888888889999999999999985 6
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccC----CcchHHH---------
Q 005282 249 ASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAAD----SNSKVHI--------- 315 (704)
Q Consensus 249 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~----~~~~~~~--------- 315 (704)
+-++.+++-+|+.|.++.+..+=.-.+.++-+.|..+|.++-+++|..|+.+|+.+.... ++....+
T Consensus 614 pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~ 693 (1387)
T KOG1517|consen 614 PLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDE 693 (1387)
T ss_pred HHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhh
Confidence 899999999999999988877766677889999999999999999999999999988642 2221111
Q ss_pred ---HhcCCh---HHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhH
Q 005282 316 ---VQRGAV---RPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGI 356 (704)
Q Consensus 316 ---~~~~~i---~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 356 (704)
.+..+. ..++.+++.+.+-++.+...+|..+..+.......
T Consensus 694 ~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~ 740 (1387)
T KOG1517|consen 694 RTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVSHLKV 740 (1387)
T ss_pred hhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHHHhHH
Confidence 222222 25666677888999999999999998776554433
No 78
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.54 E-value=1.8e-05 Score=84.99 Aligned_cols=414 Identities=21% Similarity=0.199 Sum_probs=222.5
Q ss_pred HHHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcC--hhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHH
Q 005282 46 DIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKN--EEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECA 123 (704)
Q Consensus 46 ~~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~ 123 (704)
.+..|.....+-+...+.++.++..|+.++..+..+ +.....+ ...++.+++-|++. -+|..|+
T Consensus 565 ~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL--~~~L~il~eRl~nE------------iTRl~Av 630 (1233)
T KOG1824|consen 565 YVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNEL--PRTLPILLERLGNE------------ITRLTAV 630 (1233)
T ss_pred hHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhh--HHHHHHHHHHHhch------------hHHHHHH
Confidence 345555555555656677788888888888876542 1111111 23456666666665 5799999
Q ss_pred HHHHhhcCChh-hHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHh
Q 005282 124 FALGLLAVKPE-HQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELL 202 (704)
Q Consensus 124 ~~L~~l~~~~~-~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll 202 (704)
+++.-++.++- .-..-.-..+++.+..++++... .++..++.++-.+.......-..-.-.-++.-+..++
T Consensus 631 kAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r--------~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Li 702 (1233)
T KOG1824|consen 631 KALTLIAMSPLDIDLSPVLTEILPELASFLRKNQR--------ALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLI 702 (1233)
T ss_pred HHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhh
Confidence 99999995443 22222334578889999988776 6777777777777642211111111112233344555
Q ss_pred cCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCH---------------------------------
Q 005282 203 KFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDA--------------------------------- 249 (704)
Q Consensus 203 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~--------------------------------- 249 (704)
...+-.+-..|..+|..+....+ ........-+++.++.+++++--
T Consensus 703 sesdlhvt~~a~~~L~tl~~~~p-s~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt 781 (1233)
T KOG1824|consen 703 SESDLHVTQLAVAFLTTLAIIQP-SSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLT 781 (1233)
T ss_pred hHHHHHHHHHHHHHHHHHHhccc-HHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHc
Confidence 56677777888888888876333 22223333355555555554321
Q ss_pred ---------HHHHHHHHHHH----HHhcCChhhHHHHHHcCCHHHHH-HHhc-CCChhHHHHHHHHHHHHhccCCcchHH
Q 005282 250 ---------SVHFEAVGVIG----NLVHSSPSIKKEVILAGALQPVI-GLLS-SSCSESKREAALLLGQFAAADSNSKVH 314 (704)
Q Consensus 250 ---------~v~~~a~~~L~----~l~~~~~~~~~~~~~~~~l~~L~-~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~ 314 (704)
.+-+.|...++ .++...+.. .......+. .+.+ ..+..++.-|...++.+-.+...
T Consensus 782 ~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~-----s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~---- 852 (1233)
T KOG1824|consen 782 APVYEQVTDGLHKQAYYSIAKCVAALTCACPQK-----SKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDL---- 852 (1233)
T ss_pred CCcccccccchhHHHHHHHHHHHHHHHHhcccc-----chhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCC----
Confidence 01111111111 111111100 001122222 2222 22344566666666666432221
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhh--hHHh---hCC------hHHHHHhhcCCChhH-HHHHHH
Q 005282 315 IVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQA--GIAQ---DGG------ILPLLKLLDSKNGSL-QHNAAF 382 (704)
Q Consensus 315 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~--~~~~---~~~------~~~L~~ll~~~~~~v-~~~a~~ 382 (704)
....+.-..+++.+.+++.+++.+|..||++++.++-..- .+.+ ... +-.+...+...+... +..+-.
T Consensus 853 s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~ 932 (1233)
T KOG1824|consen 853 SPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEK 932 (1233)
T ss_pred CcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHH
Confidence 1223556688888999999999999999999998643211 0100 000 111222222222211 111211
Q ss_pred HHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhcc
Q 005282 383 ALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLC 462 (704)
Q Consensus 383 ~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~ 462 (704)
+..-|..+-++.+...+ .-++..+.++...-.+.+++.|-..++++.+..+.-+..++....
T Consensus 933 IW~lL~k~cE~~eegtR------------------~vvAECLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvsavKfsi 994 (1233)
T KOG1824|consen 933 IWALLFKHCECAEEGTR------------------NVVAECLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVSAVKFSI 994 (1233)
T ss_pred HHHHHHHhcccchhhhH------------------HHHHHHhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhheeeeee
Confidence 22222111111111110 011223333333334457888888899999988888777776664
Q ss_pred CCCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhcCCC
Q 005282 463 APDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKATSL 509 (704)
Q Consensus 463 ~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~ 509 (704)
......--.....-+...+.++++++..||+.|..++..-+.+.+++
T Consensus 995 sd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpsl 1041 (1233)
T KOG1824|consen 995 SDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSL 1041 (1233)
T ss_pred cCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhH
Confidence 43322222223345778889999999999999999999988877643
No 79
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=6.8e-05 Score=78.44 Aligned_cols=229 Identities=16% Similarity=0.201 Sum_probs=160.8
Q ss_pred ccccccCCchhhHHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCC
Q 005282 30 KVSIVESGATQQDLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLT 108 (704)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~ 108 (704)
.++...+++=.++++..+-.|+ . ++.+.++.+|.-.+..+.- -|+..+. ++|.|.+-|.++++
T Consensus 132 GLS~fvTpdLARDLa~Dv~tLL---~------sskpYvRKkAIl~lykvFLkYPeAlr~-----~FprL~EkLeDpDp-- 195 (877)
T KOG1059|consen 132 GLSCIVTPDLARDLADDVFTLL---N------SSKPYVRKKAILLLYKVFLKYPEALRP-----CFPRLVEKLEDPDP-- 195 (877)
T ss_pred ccccccCchhhHHHHHHHHHHH---h------cCchHHHHHHHHHHHHHHHhhhHhHhh-----hHHHHHHhccCCCc--
Confidence 3455555565666665553333 2 2667889999998888765 2443333 47999999999965
Q ss_pred CCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhh
Q 005282 109 NAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKT 187 (704)
Q Consensus 109 ~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 187 (704)
.|+..|..+++.|+ .+|.+--. .-|.+..+|.+..++ =+.-..+..+++|+.-.|....
T Consensus 196 --------~V~SAAV~VICELArKnPknyL~-----LAP~ffkllttSsNN-------WmLIKiiKLF~aLtplEPRLgK 255 (877)
T KOG1059|consen 196 --------SVVSAAVSVICELARKNPQNYLQ-----LAPLFYKLLVTSSNN-------WVLIKLLKLFAALTPLEPRLGK 255 (877)
T ss_pred --------hHHHHHHHHHHHHHhhCCccccc-----ccHHHHHHHhccCCC-------eehHHHHHHHhhccccCchhhh
Confidence 99999999999999 88887433 458899999887764 3455677788888865665443
Q ss_pred hhhccCCcHHHHHHhcCCCH-HHHHHHHHHHHH--hccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 005282 188 RVRVEDGIPPLVELLKFVDV-KVQRAAAGALRT--LAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVH 264 (704)
Q Consensus 188 ~~~~~~~i~~L~~ll~~~~~-~~~~~a~~~L~~--l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 264 (704)
..+++|..++.+... .+...++.++.. ++.+.+++-..+.- .++.|-.++.++|+..+..++.+++.+..
T Consensus 256 -----KLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqL--CvqKLr~fiedsDqNLKYlgLlam~KI~k 328 (877)
T KOG1059|consen 256 -----KLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQL--CVQKLRIFIEDSDQNLKYLGLLAMSKILK 328 (877)
T ss_pred -----hhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHH--HHHHHhhhhhcCCccHHHHHHHHHHHHhh
Confidence 568899999987643 344444444433 23232222222111 35667778889999999999999999997
Q ss_pred CChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q 005282 265 SSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAA 306 (704)
Q Consensus 265 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~ 306 (704)
.++...++ .-+.++..|.+.++.++..|+..|..+..
T Consensus 329 tHp~~Vqa-----~kdlIlrcL~DkD~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 329 THPKAVQA-----HKDLILRCLDDKDESIRLRALDLLYGMVS 365 (877)
T ss_pred hCHHHHHH-----hHHHHHHHhccCCchhHHHHHHHHHHHhh
Confidence 77665442 34678899999999999999999998874
No 80
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.50 E-value=1.5e-05 Score=83.31 Aligned_cols=388 Identities=14% Similarity=0.066 Sum_probs=220.1
Q ss_pred HHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhCCC-------hHHHHhhccCCCcCCCCCCCCchHHH
Q 005282 47 IRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGA-------VPALVEHLQTPPQLTNAQIPYEHEVE 119 (704)
Q Consensus 47 ~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~-------i~~L~~lL~~~~~~~~~~~~~d~~v~ 119 (704)
++.++++|..+..+..+-+ .+...+++...++- +...+. +..+-..|.+... .||
T Consensus 509 ip~llpfLkavc~SkkSwq-aRhTgIkivqqIai-------l~Gcsvlphl~~lv~ii~~gl~De~q----------kVR 570 (1172)
T KOG0213|consen 509 IPALLPFLKAVCGSKKSWQ-ARHTGIKIVQQIAI-------LSGCSVLPHLKPLVKIIEHGLKDEQQ----------KVR 570 (1172)
T ss_pred cHHHHHHHHHHhccccchh-hhchhhHHHHHHHH-------HhcchhhhhhHHHHHHHHHhhcccch----------hhh
Confidence 5666777766664442222 34444454444432 111222 3334444555544 788
Q ss_pred HHHHHHHHhhc--CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHH
Q 005282 120 KECAFALGLLA--VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPP 197 (704)
Q Consensus 120 ~~a~~~L~~l~--~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 197 (704)
.-++-+|+.++ ..|.....+- .++.+|.+=.+.+.. .....-+.+++.++.....-........++-.
T Consensus 571 ~itAlalsalaeaa~Pygie~fD--sVlkpLwkgir~hrg--------k~laafLkAigyliplmd~eya~yyTrevmli 640 (1172)
T KOG0213|consen 571 TITALALSALAEAATPYGIEQFD--SVLKPLWKGIRQHRG--------KELAAFLKAIGYLIPLMDAEYASYYTREVMLI 640 (1172)
T ss_pred hHHHHHHHHHHHhcCCcchHHHH--HHHHHHHHHHHHccC--------hHHHHHHHHHhhccccccHHHHHHhHHHHHHH
Confidence 88888888888 3443322221 234455555555544 55566677788887544443333444455566
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHH-----HHHHHHhcCChhhHHH
Q 005282 198 LVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAV-----GVIGNLVHSSPSIKKE 272 (704)
Q Consensus 198 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~-----~~L~~l~~~~~~~~~~ 272 (704)
+.+-..++|.+.++..+..+..+|. .+..-.......++|.+....-. ++.|+ .-+...+ .+..+.
T Consensus 641 l~rEf~sPDeemkkivLKVv~qcc~-t~Gv~~~y~r~dilp~ff~~fw~-----rrmA~drr~ykqlv~tt---v~ia~K 711 (1172)
T KOG0213|consen 641 LIREFGSPDEEMKKIVLKVVKQCCA-TDGVEPAYIRFDILPEFFFSFWG-----RRMALDRRNYKQLVDTT---VEIAAK 711 (1172)
T ss_pred HHHhhCCChHHHHHHHHHHHHHHhc-ccCCCHHHHhhhhhHHHHhhhhh-----hhhhccccchhhHHHHH---HHHHHH
Confidence 6677779999999999999999995 44444445555666766654321 22221 0111110 111111
Q ss_pred HHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccC-CcchHHHHhcCChHHHHHhhCCCC--HHHHHHHHHHHHHhhcC
Q 005282 273 VILAGALQPVIGLLSSSCSESKREAALLLGQFAAAD-SNSKVHIVQRGAVRPLIEMLQSPD--SQLKEMSAFALGRLAQD 349 (704)
Q Consensus 273 ~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~ll~~~~--~~v~~~a~~~L~~l~~~ 349 (704)
+.....+..++.=+.+..+.-+...+.++.++...- ......-.+...+..++..++.++ ..+.-....++.|-...
T Consensus 712 vG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~ 791 (1172)
T KOG0213|consen 712 VGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGG 791 (1172)
T ss_pred hCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhh
Confidence 222223455555566777777777777766654321 112222233445666666666543 23333444444442221
Q ss_pred CchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchh---hHHHhhCCcccccccccccccchHHHHHHHHH
Q 005282 350 THNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNV---ADLVRVGGVQKLQDGEFTVQPTKDCVARTLKR 426 (704)
Q Consensus 350 ~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~---~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~ 426 (704)
+.+-.-...+..++..|+++.+.+|..|+..+..++---..+ +.+...|.
T Consensus 792 ---r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv------------------------ 844 (1172)
T KOG0213|consen 792 ---RVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV------------------------ 844 (1172)
T ss_pred ---ccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH------------------------
Confidence 111111223455677889999999999999999886421111 12222222
Q ss_pred HHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCC-CccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhh
Q 005282 427 LEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAP-DDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATK 505 (704)
Q Consensus 427 ~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~ 505 (704)
.|...+....+++.-..+.+|..+.+. ...+..-.-.+.+|.|.-.|.+.+..++..+...+..++..
T Consensus 845 -----------vLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~Iadr 913 (1172)
T KOG0213|consen 845 -----------VLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADR 913 (1172)
T ss_pred -----------HHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhc
Confidence 255667778888888877777777442 22222223357899999999999999999999999999988
Q ss_pred cCCC
Q 005282 506 ATSL 509 (704)
Q Consensus 506 ~~~~ 509 (704)
.+.+
T Consensus 914 gpE~ 917 (1172)
T KOG0213|consen 914 GPEY 917 (1172)
T ss_pred Cccc
Confidence 7643
No 81
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.49 E-value=6.6e-05 Score=80.83 Aligned_cols=435 Identities=15% Similarity=0.105 Sum_probs=235.3
Q ss_pred hhHHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcC-hhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHH
Q 005282 40 QQDLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKN-EEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEV 118 (704)
Q Consensus 40 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v 118 (704)
.-.+.+.++.+++.+..-+..++-. .+..++..|..+... |..-.. .....+|.+...|.+.++ ....
T Consensus 426 ~~~L~~~~~~iVkai~~qlr~ks~k--t~~~cf~lL~eli~~lp~~l~~-~~~slvpgI~~~l~DkSs--------ss~~ 494 (1233)
T KOG1824|consen 426 LSMLSDQVPLIVKAIQKQLREKSVK--TRQGCFLLLTELINVLPGALAQ-HIPSLVPGIIYSLNDKSS--------SSNL 494 (1233)
T ss_pred hHHHHhhhHHHHHHHHHHHhhcccc--chhhHHHHHHHHHHhCcchhhh-cccccchhhhhhcCCccc--------hHHH
Confidence 3556777888888887776543333 455556666666542 221111 123567888888877766 3467
Q ss_pred HHHHHHHHHhhc--CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhh--hhhcc--
Q 005282 119 EKECAFALGLLA--VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKT--RVRVE-- 192 (704)
Q Consensus 119 ~~~a~~~L~~l~--~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~--~~~~~-- 192 (704)
+..+...+.++. ..|+.- +..++.+...+...-.++. ..+-..|+.....++.--.+... .+-..
T Consensus 495 ki~~L~fl~~~L~s~~p~~f-----hp~~~~Ls~~v~~aV~d~f----yKisaEAL~v~~~lvkvirpl~~~~~~d~~~~ 565 (1233)
T KOG1824|consen 495 KIDALVFLYSALISHPPEVF-----HPHLSALSPPVVAAVGDPF----YKISAEALLVCQQLVKVIRPLQPPSSFDASPY 565 (1233)
T ss_pred HHHHHHHHHHHHhcCChhhc-----ccchhhhhhHHHHHhcCch----HhhhHHHHHHHHHHHHHhcccCCCccCCCChh
Confidence 888888887776 333321 2334444444433222211 15555666666666521110000 00011
Q ss_pred --CCcHHHHHHhc--CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh
Q 005282 193 --DGIPPLVELLK--FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPS 268 (704)
Q Consensus 193 --~~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 268 (704)
..+...++.|. ..|.++++.|+.+++.+...-. .....--...++.+++-| .++-.|..|++++..++...-.
T Consensus 566 v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fg-D~l~~eL~~~L~il~eRl--~nEiTRl~AvkAlt~Ia~S~l~ 642 (1233)
T KOG1824|consen 566 VKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFG-DFLGNELPRTLPILLERL--GNEITRLTAVKALTLIAMSPLD 642 (1233)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHh-hhhhhhhHHHHHHHHHHH--hchhHHHHHHHHHHHHHhccce
Confidence 11223334444 4678999999999999864211 111111122455555555 5677889999999999866322
Q ss_pred hHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 005282 269 IKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQ 348 (704)
Q Consensus 269 ~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 348 (704)
....-.-..+++.+...+.......+.....++..+..........-.-.-++..+..++...+-.+-..|...|..+..
T Consensus 643 i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~ 722 (1233)
T KOG1824|consen 643 IDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAI 722 (1233)
T ss_pred eehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 22122223467777777766555556566666655554332222222223356666677777888888999999999998
Q ss_pred CCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHH----ccc-CCchhhHH--Hh---hCCcccccccccccccchH
Q 005282 349 DTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYG----LAD-NEDNVADL--VR---VGGVQKLQDGEFTVQPTKD 418 (704)
Q Consensus 349 ~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~----l~~-~~~~~~~l--~~---~g~i~~l~~~~~~~~~~~~ 418 (704)
.......-.....++.++.+++++ -++..|..++.+ +.. ..+....+ .. .-..+...++..+ ....
T Consensus 723 ~~ps~l~~~~~~iL~~ii~ll~Sp--llqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~k--qa~~ 798 (1233)
T KOG1824|consen 723 IQPSSLLKISNPILDEIIRLLRSP--LLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHK--QAYY 798 (1233)
T ss_pred cccHHHHHHhhhhHHHHHHHhhCc--cccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhH--HHHH
Confidence 877766666667788899998864 333344333322 222 22222211 11 1111111110000 1112
Q ss_pred HHHHHHHHHHHHh---hcchhHHHHHHHh--hccHHHHHHHHHHHHhccCCCccceeeecCCcHHHHHHHHhhcchhhhh
Q 005282 419 CVARTLKRLEEKV---HGRVLNHLLYLLR--VADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQRE 493 (704)
Q Consensus 419 ~~~~~~~~~~~~~---~~~~~~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~ 493 (704)
+++.....+.... ...+...+..=+. ..+..++..|...++.+.+..+.-. ..+--..+++.+++.+.+++.
T Consensus 799 siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~---~~e~~~~iieaf~sp~edvks 875 (1233)
T KOG1824|consen 799 SIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSP---QNELKDTIIEAFNSPSEDVKS 875 (1233)
T ss_pred HHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCc---chhhHHHHHHHcCCChHHHHH
Confidence 2332222222221 1112223333333 2456788888999998855432221 122334678888899999999
Q ss_pred hHHHHHHHHhh
Q 005282 494 ESSVALYKLAT 504 (704)
Q Consensus 494 ~a~~~L~~L~~ 504 (704)
+|+.||++++.
T Consensus 876 AAs~ALGsl~v 886 (1233)
T KOG1824|consen 876 AASYALGSLAV 886 (1233)
T ss_pred HHHHHhhhhhc
Confidence 99999999887
No 82
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=0.00078 Score=71.84 Aligned_cols=309 Identities=17% Similarity=0.180 Sum_probs=200.3
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcH
Q 005282 117 EVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIP 196 (704)
Q Consensus 117 ~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 196 (704)
-+.-.|+.+|++++..+-.| ...|.+-++++..++ -++..|+.|...+....|+..+ .+++
T Consensus 122 ~vVglAL~alg~i~s~Emar------dlapeVe~Ll~~~~~--------~irKKA~Lca~r~irK~P~l~e-----~f~~ 182 (866)
T KOG1062|consen 122 YVVGLALCALGNICSPEMAR------DLAPEVERLLQHRDP--------YIRKKAALCAVRFIRKVPDLVE-----HFVI 182 (866)
T ss_pred eehHHHHHHhhccCCHHHhH------HhhHHHHHHHhCCCH--------HHHHHHHHHHHHHHHcCchHHH-----HhhH
Confidence 57778888888888544343 235777888888665 8999999999999877776544 4567
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc----C-----------CCHHHHHHHHHHHHH
Q 005282 197 PLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR----S-----------EDASVHFEAVGVIGN 261 (704)
Q Consensus 197 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~----~-----------~~~~v~~~a~~~L~~ 261 (704)
....+|.+.+..|...++..+..+|..+++....+.+ .++-++..|+ . ++|-++..+++.|.-
T Consensus 183 ~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLri 260 (866)
T KOG1062|consen 183 AFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRI 260 (866)
T ss_pred HHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHH
Confidence 7778888888889999999999998877766666655 4555665554 1 357788888988888
Q ss_pred HhcCChhhHHHHHHcCCHHHHHHHhcCC------ChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHH
Q 005282 262 LVHSSPSIKKEVILAGALQPVIGLLSSS------CSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQL 335 (704)
Q Consensus 262 l~~~~~~~~~~~~~~~~l~~L~~ll~~~------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v 335 (704)
+-++++.....+. ..|-.+.... ...+..+++.++..+-. +....+ -++..|-++|.+.+..+
T Consensus 261 LGq~d~daSd~M~-----DiLaqvatntdsskN~GnAILYE~V~TI~~I~~---~~~Lrv---lainiLgkFL~n~d~Ni 329 (866)
T KOG1062|consen 261 LGQNDADASDLMN-----DILAQVATNTDSSKNAGNAILYECVRTIMDIRS---NSGLRV---LAINILGKFLLNRDNNI 329 (866)
T ss_pred hcCCCccHHHHHH-----HHHHHHHhcccccccchhHHHHHHHHHHHhccC---CchHHH---HHHHHHHHHhcCCccce
Confidence 8877665544332 2233333321 12334455555554421 111111 14666777777777778
Q ss_pred HHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHHHhhCCccccccccccccc
Q 005282 336 KEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQP 415 (704)
Q Consensus 336 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~ 415 (704)
|..|+.+|......+++..+-. -..++.+|++.|..+++.|...+..|.. ..|.+.+++
T Consensus 330 rYvaLn~L~r~V~~d~~avqrH----r~tIleCL~DpD~SIkrralELs~~lvn-~~Nv~~mv~---------------- 388 (866)
T KOG1062|consen 330 RYVALNMLLRVVQQDPTAVQRH----RSTILECLKDPDVSIKRRALELSYALVN-ESNVRVMVK---------------- 388 (866)
T ss_pred eeeehhhHHhhhcCCcHHHHHH----HHHHHHHhcCCcHHHHHHHHHHHHHHhc-cccHHHHHH----------------
Confidence 8888888877776554432211 1357899999999999999998888853 334444433
Q ss_pred chHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccC-CCccceeeecCCcHHHHHHHHhhcchhhhhh
Q 005282 416 TKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCA-PDDCKTIFIDNNGLELLLGLLESTSVKQREE 494 (704)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~ 494 (704)
.|+.+|...+++.+..++.-+..++. ..+.+... |+.+.+.+.....-++..
T Consensus 389 ----------------------eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~-----idtml~Vl~~aG~~V~~d 441 (866)
T KOG1062|consen 389 ----------------------ELLEFLESSDEDFKADIASKIAELAEKFAPDKRWH-----IDTMLKVLKTAGDFVNDD 441 (866)
T ss_pred ----------------------HHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhH-----HHHHHHHHHhcccccchh
Confidence 47778888888888888888888854 22222222 344455554444444445
Q ss_pred HHHHHHHHhhh
Q 005282 495 SSVALYKLATK 505 (704)
Q Consensus 495 a~~~L~~L~~~ 505 (704)
+...+..|..+
T Consensus 442 v~~nll~LIa~ 452 (866)
T KOG1062|consen 442 VVNNLLRLIAN 452 (866)
T ss_pred hHHHHHHHHhc
Confidence 55555544443
No 83
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=1.6e-06 Score=86.99 Aligned_cols=328 Identities=12% Similarity=0.114 Sum_probs=211.8
Q ss_pred hhhHHHHHHHHHHHHhhhccC---CchhhHHHHHHHHHHHHHhhcC-hhHHHHHHhCCChHHHHhhccCCCcCCCCCCCC
Q 005282 39 TQQDLVQDIRAQIDILNSKFS---SDETDRAAAKTASHALVEFAKN-EEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPY 114 (704)
Q Consensus 39 ~~~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~ 114 (704)
.++++..+-..+++......+ ...++...-..++..|.++++. .-.|.-+.+..+.+.|+++|..+..
T Consensus 374 ~nq~fI~a~~~~~e~~t~~~~~~vn~~~d~l~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Pei-------- 445 (743)
T COG5369 374 ENQRFIAARSKMIESVTGTFKTKVNRKQDDLDFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEI-------- 445 (743)
T ss_pred hhhhhhHHHHHHHHhhhhhhhccCCccchHHHHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccc--------
Confidence 346666666777776654332 1122222334456667777774 5677778889999999999999754
Q ss_pred chHHHHHHHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChh-hhhhhhcc
Q 005282 115 EHEVEKECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENAN-IKTRVRVE 192 (704)
Q Consensus 115 d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~ 192 (704)
-+.-.+...++|.. .-+..+..+.+.|.+..|++++.+.++ .++....|.+.++..+..+ .+-.+...
T Consensus 446 --mi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd--------aLqans~wvlrHlmyncq~~ekf~~Lak 515 (743)
T COG5369 446 --MIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD--------ALQANSEWVLRHLMYNCQKNEKFKFLAK 515 (743)
T ss_pred --eeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh--------hhhhcchhhhhhhhhcCcchhhhhhHHh
Confidence 56667788888888 777889999999999999999986654 8999999999999854433 34567788
Q ss_pred CCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCch---hhHHhHhcC----ChHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 005282 193 DGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDE---NKKLIVECN----ALPTLVLMLRSEDASVHFEAVGVIGNLVHS 265 (704)
Q Consensus 193 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~---~~~~~~~~~----~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 265 (704)
-++..++.+.++++..++..++..++|+..+... ....+.... ....+++.++..+|-.....+..|.+++..
T Consensus 516 ig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~ 595 (743)
T COG5369 516 IGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEGCYILVRNAAC 595 (743)
T ss_pred cCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhc
Confidence 8999999999999999999999999999864333 222222221 345566777778888888889999999988
Q ss_pred ChhhHHHHHH-cCCHHHHHHHhcCCC-----------hhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhh---CC
Q 005282 266 SPSIKKEVIL-AGALQPVIGLLSSSC-----------SESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEML---QS 330 (704)
Q Consensus 266 ~~~~~~~~~~-~~~l~~L~~ll~~~~-----------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll---~~ 330 (704)
++.....+.. ...+..+..+|.... ..+...-.....++..........+... |.+=.+= ..
T Consensus 596 d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~---p~~D~~~~d~~~ 672 (743)
T COG5369 596 DDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTT---PHLDNMKKDSTT 672 (743)
T ss_pred cchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecccccccccccceecC---CCccccccccCC
Confidence 8777776664 345555555542110 1111111111112211111111111100 1111111 12
Q ss_pred CCHHHHHHHHHHHHHhhcCC---c------hhhhHHhh-CChHHHHHhhcCCChhHHHHHHHHHHHc
Q 005282 331 PDSQLKEMSAFALGRLAQDT---H------NQAGIAQD-GGILPLLKLLDSKNGSLQHNAAFALYGL 387 (704)
Q Consensus 331 ~~~~v~~~a~~~L~~l~~~~---~------~~~~~~~~-~~~~~L~~ll~~~~~~v~~~a~~~L~~l 387 (704)
++.+.-.+..|.+.|+.-.. + .|..+..+ |.-+.+..+..+.++.|++.+..+|.++
T Consensus 673 ~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 673 RNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALENL 739 (743)
T ss_pred CchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence 34567777788887865321 1 33445545 4445566666777889999999999887
No 84
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=2.5e-05 Score=82.84 Aligned_cols=384 Identities=18% Similarity=0.160 Sum_probs=237.5
Q ss_pred HHHHHH-HHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcCCc
Q 005282 68 AKTASH-ALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTGAL 145 (704)
Q Consensus 68 ~~~a~~-~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l 145 (704)
+..|.+ ++..+..+.+.. +..+.++...+..+- +++..+---+.+.+ ..|+... +++
T Consensus 30 r~~a~kkvIa~Mt~G~DvS------slF~dvvk~~~T~dl----------elKKlvyLYl~nYa~~~P~~a~-----~av 88 (734)
T KOG1061|consen 30 RKDAVKKVIAYMTVGKDVS------SLFPDVVKCMQTRDL----------ELKKLVYLYLMNYAKGKPDLAI-----LAV 88 (734)
T ss_pred HHHHHHHHHhcCccCcchH------hhhHHHHhhcccCCc----------hHHHHHHHHHHHhhccCchHHH-----hhh
Confidence 444443 444555565543 345888888888865 78888888888888 6665421 233
Q ss_pred HHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCc
Q 005282 146 PHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKND 225 (704)
Q Consensus 146 ~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 225 (704)
.. ++++..+. .|.++..|++.++.+-. +.. ......+|...+++.++.+|..+.-+..++-.
T Consensus 89 nt---~~kD~~d~-----np~iR~lAlrtm~~l~v--~~i-----~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~--- 150 (734)
T KOG1061|consen 89 NT---FLKDCEDP-----NPLIRALALRTMGCLRV--DKI-----TEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFD--- 150 (734)
T ss_pred hh---hhccCCCC-----CHHHHHHHhhceeeEee--hHH-----HHHHHHHHHHhccCCChhHHHHHHHHHHHhhc---
Confidence 33 33433321 23777777766666542 111 12346789999999999999999999998864
Q ss_pred hhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHh
Q 005282 226 ENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFA 305 (704)
Q Consensus 226 ~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~ 305 (704)
.+.+.....|.++.|..++.++++.|...|+.+|..+...++...........+..++..+...+..-+.....++.+..
T Consensus 151 ~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~ 230 (734)
T KOG1061|consen 151 IDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYV 230 (734)
T ss_pred CChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcC
Confidence 44566778899999999999999999999999999998766532222222334455555555554444555555555543
Q ss_pred ccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHH
Q 005282 306 AADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALY 385 (704)
Q Consensus 306 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~ 385 (704)
..+.... ..+++.+...+++.++.+.-.+...+.++...............-++++.++.+.. +++..++.=+.
T Consensus 231 p~d~~ea-----~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~ 304 (734)
T KOG1061|consen 231 PKDSREA-----EDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNIN 304 (734)
T ss_pred CCCchhH-----HHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHH
Confidence 3222111 23567777778887777777778888777765444333444445566777776655 66665555443
Q ss_pred Hccc-CCchhhHHHhhCCccccc---ccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhc
Q 005282 386 GLAD-NEDNVADLVRVGGVQKLQ---DGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHL 461 (704)
Q Consensus 386 ~l~~-~~~~~~~l~~~g~i~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l 461 (704)
-+.. .|+ +.....-..+. +..+......+|+...... .+...++..+......-+.+.-..+.++|+++
T Consensus 305 lil~~~p~----~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~---~nl~qvl~El~eYatevD~~fvrkaIraig~~ 377 (734)
T KOG1061|consen 305 LILQKRPE----ILKVEIKVFFCKYNDPIYVKLEKLEILIELAND---ANLAQVLAELKEYATEVDVDFVRKAVRAIGRL 377 (734)
T ss_pred HHHHhChH----HHHhHhHeeeeecCCchhhHHHHHHHHHHHhhH---hHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhh
Confidence 3332 222 22211111111 1122122223333222111 11122556667777778899999999999999
Q ss_pred cCCCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhcCC
Q 005282 462 CAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKATS 508 (704)
Q Consensus 462 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~ 508 (704)
+.-.+.. ++.+..|+++++..-.-+...+...+..+-++.|+
T Consensus 378 aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~ 419 (734)
T KOG1061|consen 378 AIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPN 419 (734)
T ss_pred hhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCC
Confidence 6543222 67899999999976666667888899999887763
No 85
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=6.3e-05 Score=78.66 Aligned_cols=224 Identities=21% Similarity=0.269 Sum_probs=163.3
Q ss_pred HHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCc
Q 005282 146 PHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKND 225 (704)
Q Consensus 146 ~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 225 (704)
+-++.+|.+..+ -++..|...+..++..-|+.-. ..+|.|..-|.++||.++.+|..+++.|+..+|
T Consensus 147 ~Dv~tLL~sskp--------YvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnP 213 (877)
T KOG1059|consen 147 DDVFTLLNSSKP--------YVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNP 213 (877)
T ss_pred HHHHHHHhcCch--------HHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCC
Confidence 556777777765 8999999999999966665422 568999999999999999999999999999888
Q ss_pred hhhHHhHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCCh-hHHHHHHHHHH-
Q 005282 226 ENKKLIVECNALPTLVLMLR-SEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCS-ESKREAALLLG- 302 (704)
Q Consensus 226 ~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~-~~~~~a~~~L~- 302 (704)
.+.-.+ -|.+.++|. +.+-.+....+..+++|+.-.|... ...+++|..++.+... ++..+|+.++-
T Consensus 214 knyL~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLg-----KKLieplt~li~sT~AmSLlYECvNTVVa 283 (877)
T KOG1059|consen 214 QNYLQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLG-----KKLIEPITELMESTVAMSLLYECVNTVVA 283 (877)
T ss_pred cccccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCchhh-----hhhhhHHHHHHHhhHHHHHHHHHHHHhee
Confidence 776544 478888886 5677888899999999986655433 3578889998876543 33444544332
Q ss_pred -HHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHH
Q 005282 303 -QFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAA 381 (704)
Q Consensus 303 -~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~ 381 (704)
++..+.++.-..+ .-.++.|-.++.+.|+.++..++.+++.+......... ..-+.++++|.+.|+++|-.|+
T Consensus 284 ~s~s~g~~d~~asi--qLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vq----a~kdlIlrcL~DkD~SIRlrAL 357 (877)
T KOG1059|consen 284 VSMSSGMSDHSASI--QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQ----AHKDLILRCLDDKDESIRLRAL 357 (877)
T ss_pred ehhccCCCCcHHHH--HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHH----HhHHHHHHHhccCCchhHHHHH
Confidence 4444433332222 12577888888899999999999999999865432211 1235688999999999999999
Q ss_pred HHHHHcccCCchhhHHHh
Q 005282 382 FALYGLADNEDNVADLVR 399 (704)
Q Consensus 382 ~~L~~l~~~~~~~~~l~~ 399 (704)
..|..+.. .+|...|++
T Consensus 358 dLl~gmVs-kkNl~eIVk 374 (877)
T KOG1059|consen 358 DLLYGMVS-KKNLMEIVK 374 (877)
T ss_pred HHHHHHhh-hhhHHHHHH
Confidence 99998864 333444433
No 86
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.38 E-value=7.3e-05 Score=77.04 Aligned_cols=240 Identities=17% Similarity=0.059 Sum_probs=169.0
Q ss_pred CCcHHHHHHhc-CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHH
Q 005282 193 DGIPPLVELLK-FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKK 271 (704)
Q Consensus 193 ~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 271 (704)
.+++.++..+. .+++++...++.++.... .+ ..+..|+..|.+.++.++..++.+|+.+-.
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~~--~~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~------- 115 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQE--DA---------LDLRSVLAVLQAGPEGLCAGIQAALGWLGG------- 115 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhccC--Ch---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCc-------
Confidence 45777888884 566777766555554322 11 137889999999999999999999986631
Q ss_pred HHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCc
Q 005282 272 EVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTH 351 (704)
Q Consensus 272 ~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 351 (704)
.+..+.|..++.+.++.++..++.++.... ....+.+..++++.++.++..|+.+|+.+...
T Consensus 116 ----~~a~~~L~~~L~~~~p~vR~aal~al~~r~------------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-- 177 (410)
T TIGR02270 116 ----RQAEPWLEPLLAASEPPGRAIGLAALGAHR------------HDPGPALEAALTHEDALVRAAALRALGELPRR-- 177 (410)
T ss_pred ----hHHHHHHHHHhcCCChHHHHHHHHHHHhhc------------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc--
Confidence 235678889999999999988887776621 22467899999999999999999999987653
Q ss_pred hhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHHHh----hCCcccccccccccccchHHHHHHHHHH
Q 005282 352 NQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVR----VGGVQKLQDGEFTVQPTKDCVARTLKRL 427 (704)
Q Consensus 352 ~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~----~g~i~~l~~~~~~~~~~~~~~~~~~~~~ 427 (704)
..++.|...+.+.++.|+..|+.++..+.. ++....+.. .|.-... -....+...
T Consensus 178 --------~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~------------~l~~~lal~ 236 (410)
T TIGR02270 178 --------LSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQ------------RLLVLLAVA 236 (410)
T ss_pred --------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHH------------HHHHHHHhC
Confidence 345667788999999999999999988844 433333222 1211100 000001000
Q ss_pred HHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282 428 EEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKA 506 (704)
Q Consensus 428 ~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 506 (704)
-....++.|..+++... ++..++++++.+ .....++.|+..+... .+++.|..++..++--.
T Consensus 237 ---~~~~a~~~L~~ll~d~~--vr~~a~~AlG~l----------g~p~av~~L~~~l~d~--~~aR~A~eA~~~ItG~~ 298 (410)
T TIGR02270 237 ---GGPDAQAWLRELLQAAA--TRREALRAVGLV----------GDVEAAPWCLEAMREP--PWARLAGEAFSLITGMD 298 (410)
T ss_pred ---CchhHHHHHHHHhcChh--hHHHHHHHHHHc----------CCcchHHHHHHHhcCc--HHHHHHHHHHHHhhCCC
Confidence 12246777888876654 899999999988 3456899999988644 39999999999887643
No 87
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.37 E-value=3.4e-06 Score=68.89 Aligned_cols=144 Identities=17% Similarity=0.193 Sum_probs=116.8
Q ss_pred CcHHHHHHhc-CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 005282 194 GIPPLVELLK-FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKE 272 (704)
Q Consensus 194 ~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 272 (704)
.++.|+.-.+ ..+.+.++....-|+|++. +|.+...+.+.+++..++..|..++....+.++..|+|+|.+ +...+.
T Consensus 17 Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d-~~n~~~ 94 (173)
T KOG4646|consen 17 YLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLD-KTNAKF 94 (173)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccC-hHHHHH
Confidence 3455555444 5688999999999999996 899999999999999999999999999999999999999976 777888
Q ss_pred HHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHH
Q 005282 273 VILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMS 339 (704)
Q Consensus 273 ~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a 339 (704)
+.++++++.++..++++...+...++.++..++..+...+..+....++..+..+-.+.+...+..|
T Consensus 95 I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa 161 (173)
T KOG4646|consen 95 IREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLA 161 (173)
T ss_pred HHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999999988899999999999988777777777655555555554433333333333
No 88
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=0.00047 Score=65.57 Aligned_cols=302 Identities=14% Similarity=0.159 Sum_probs=206.0
Q ss_pred HHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHH--HHhhccCCCCCcc
Q 005282 86 SLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVS--LLKQYKNGGNSRA 163 (704)
Q Consensus 86 ~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~--lL~~~~~~~~~~~ 163 (704)
..+++.|+.+.++..+...+. +|-..|...+..++..|..-..+.+.+....+-. +--..++
T Consensus 122 llvvNaeilklildcIggedd----------eVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcnd------ 185 (524)
T KOG4413|consen 122 LLVVNAEILKLILDCIGGEDD----------EVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCND------ 185 (524)
T ss_pred HHHhhhhHHHHHHHHHcCCcH----------HHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhh------
Confidence 344588999999999988865 9999999999999988888888888877665432 2222222
Q ss_pred hhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcC-CCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHH
Q 005282 164 LSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKF-VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVL 242 (704)
Q Consensus 164 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 242 (704)
-.+......+..+..-++.........|.+..|..-++. .|.-++..++.....|+. ....++.+.+.|.++.+..
T Consensus 186 --iaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLae-teHgreflaQeglIdlicn 262 (524)
T KOG4413|consen 186 --IARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAE-TEHGREFLAQEGLIDLICN 262 (524)
T ss_pred --HHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHH-HhhhhhhcchhhHHHHHHH
Confidence 566777777888877788888888889988888887775 777888889999999985 7788888899999999999
Q ss_pred hhc--CCCHHHHHHHHHHHHHHhcCChhh----HHHHHH--cCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHH
Q 005282 243 MLR--SEDASVHFEAVGVIGNLVHSSPSI----KKEVIL--AGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVH 314 (704)
Q Consensus 243 lL~--~~~~~v~~~a~~~L~~l~~~~~~~----~~~~~~--~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 314 (704)
++. +.+|--...++...+.+... ... .+.+.+ .-+++...+.+...++..+..|+.+++.+-+ +.+..+.
T Consensus 263 IIsGadsdPfekfralmgfgkffgk-eaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGS-nteGadl 340 (524)
T KOG4413|consen 263 IISGADSDPFEKFRALMGFGKFFGK-EAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGS-NTEGADL 340 (524)
T ss_pred HhhCCCCCcHHHHHHHHHHHHHhcc-hHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccC-CcchhHH
Confidence 886 45565555566666555422 111 111221 1234555666778889999999999998864 5566666
Q ss_pred HHhcCC--hHHHHHhhCC-CCHHHHHHHHHHHHHhhcC---Cchh-----------hhHH----hh---CChHHHHHhhc
Q 005282 315 IVQRGA--VRPLIEMLQS-PDSQLKEMSAFALGRLAQD---THNQ-----------AGIA----QD---GGILPLLKLLD 370 (704)
Q Consensus 315 ~~~~~~--i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~---~~~~-----------~~~~----~~---~~~~~L~~ll~ 370 (704)
+...|- .+.++.-..+ ....-++.+..+|.+++.. .+++ ..+. +. .....+...++
T Consensus 341 llkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilq 420 (524)
T KOG4413|consen 341 LLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQ 420 (524)
T ss_pred HhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHc
Confidence 665543 3333333322 2223345667777777643 2211 0111 11 22334566677
Q ss_pred CCChhHHHHHHHHHHHcccCCchhhHHHh-hCCcccccc
Q 005282 371 SKNGSLQHNAAFALYGLADNEDNVADLVR-VGGVQKLQD 408 (704)
Q Consensus 371 ~~~~~v~~~a~~~L~~l~~~~~~~~~l~~-~g~i~~l~~ 408 (704)
...++++..+..++..++..|=....+.. .|.+....+
T Consensus 421 QpfpEihcAalktfTAiaaqPWalkeifakeefieiVtD 459 (524)
T KOG4413|consen 421 QPFPEIHCAALKTFTAIAAQPWALKEIFAKEEFIEIVTD 459 (524)
T ss_pred CCChhhHHHHHHHHHHHHcCcHHHHHHhcCccceeeecc
Confidence 77899999999999999988876655544 566666554
No 89
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.35 E-value=3e-05 Score=81.11 Aligned_cols=264 Identities=16% Similarity=0.112 Sum_probs=165.4
Q ss_pred hHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHH--HHHHcCCcHHHHHHHhhccCCCCCcchhHHHHH
Q 005282 94 VPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQ--IIVDTGALPHLVSLLKQYKNGGNSRALSGVIRR 170 (704)
Q Consensus 94 i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~--~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~ 170 (704)
+...+..|.+.++ .+|.+|+..++.++ --..+.+ .+...|+ .|...|-... +++.-.
T Consensus 801 ~stiL~rLnnksa----------~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeey--------pEvLgs 860 (1172)
T KOG0213|consen 801 CSTILWRLNNKSA----------KVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEY--------PEVLGS 860 (1172)
T ss_pred HHHHHHHhcCCCh----------hHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCccc--------HHHHHH
Confidence 4455666777765 89999999999888 2222211 2222232 3444444433 377777
Q ss_pred HHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHH
Q 005282 171 AADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDAS 250 (704)
Q Consensus 171 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~ 250 (704)
.+.++..++.--.-.+..--..+.+|.|..+|++....++.+++..++.++...++....--...+.--|+++|.+-+.+
T Consensus 861 ILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~ 940 (1172)
T KOG0213|consen 861 ILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKE 940 (1172)
T ss_pred HHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 77777766631111111122357899999999999999999999999999986665322211222344578888889999
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCC
Q 005282 251 VHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQS 330 (704)
Q Consensus 251 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~ 330 (704)
+|+.|..+++.++.. +.-.+++..|+.-|...+-..+.....+++-.+..+.. -.++|.|+.=-..
T Consensus 941 iRRaa~nTfG~Iaka-------IGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~p-------FtVLPalmneYrt 1006 (1172)
T KOG0213|consen 941 IRRAAVNTFGYIAKA-------IGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGP-------FTVLPALMNEYRT 1006 (1172)
T ss_pred HHHHHHhhhhHHHHh-------cCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCc-------hhhhHHHHhhccC
Confidence 999999999999743 22334455555555443332232222333322211101 1356666666667
Q ss_pred CCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCC
Q 005282 331 PDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNE 391 (704)
Q Consensus 331 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 391 (704)
++..|+..++.+++-+-..-.....-.-....+.|-+.|.+.+..-|..|..++.+++-+.
T Consensus 1007 Pe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~ 1067 (1172)
T KOG0213|consen 1007 PEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGV 1067 (1172)
T ss_pred chhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCC
Confidence 8889999999999888754332222222234455667888889999999999999998643
No 90
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=4e-05 Score=72.26 Aligned_cols=244 Identities=18% Similarity=0.172 Sum_probs=166.6
Q ss_pred HHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhc-cCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC
Q 005282 146 PHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRV-EDGIPPLVELLKFVDVKVQRAAAGALRTLAFKN 224 (704)
Q Consensus 146 ~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 224 (704)
-.++.++.+.++ .++..|+.-+..++.. ..+..... ...++.+.+++....+ ...|+.++.|++. +
T Consensus 6 ~elv~ll~~~sP--------~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq-~ 72 (353)
T KOG2973|consen 6 VELVELLHSLSP--------PVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQ-K 72 (353)
T ss_pred HHHHHHhccCCh--------HHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHh-h
Confidence 356778887765 8999999999888864 33332222 2347778888887766 6788999999997 7
Q ss_pred chhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHH------cCCHHHHHHHhcCCCh--hHHHH
Q 005282 225 DENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVIL------AGALQPVIGLLSSSCS--ESKRE 296 (704)
Q Consensus 225 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~------~~~l~~L~~ll~~~~~--~~~~~ 296 (704)
+..+..+... .+..++..+.++........+.+|.|+++........... .|.+.........+-. .-...
T Consensus 73 ~~l~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~y 151 (353)
T KOG2973|consen 73 EELRKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHY 151 (353)
T ss_pred HHHHHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhH
Confidence 7777777766 8888888888887888899999999999886555444332 2334444444443322 22566
Q ss_pred HHHHHHHHhccCCcchHHHHhcCC--hHHHHHhhCCCCHHHHH-HHHHHHHHhhcCCchhhhHHhhC--ChHHH------
Q 005282 297 AALLLGQFAAADSNSKVHIVQRGA--VRPLIEMLQSPDSQLKE-MSAFALGRLAQDTHNQAGIAQDG--GILPL------ 365 (704)
Q Consensus 297 a~~~L~~l~~~~~~~~~~~~~~~~--i~~L~~ll~~~~~~v~~-~a~~~L~~l~~~~~~~~~~~~~~--~~~~L------ 365 (704)
.+..+.|++. .+..+..+..... .+.+.. +.+.+..+|. ..+++|.|+|.....+..+...+ .++.+
T Consensus 152 lA~vf~nls~-~~~gR~l~~~~k~~p~~kll~-ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlag 229 (353)
T KOG2973|consen 152 LAPVFANLSQ-FEAGRKLLLEPKRFPDQKLLP-FTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAG 229 (353)
T ss_pred HHHHHHHHhh-hhhhhhHhcchhhhhHhhhhc-ccccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCC
Confidence 7778888875 5555665655542 223333 3345555554 68899999998877766555421 12221
Q ss_pred ---------------HHhhc-----CCChhHHHHHHHHHHHcccCCchhhHHHhhCCccc
Q 005282 366 ---------------LKLLD-----SKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQK 405 (704)
Q Consensus 366 ---------------~~ll~-----~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~ 405 (704)
++++. .+++.+++.-+.+|..|+.....++.+...|+.+.
T Consensus 230 pee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpi 289 (353)
T KOG2973|consen 230 PEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPI 289 (353)
T ss_pred ccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHH
Confidence 23332 35788999999999999999999999988777554
No 91
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.29 E-value=2.6e-05 Score=79.90 Aligned_cols=264 Identities=15% Similarity=0.106 Sum_probs=168.5
Q ss_pred ChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhh--HHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHH
Q 005282 93 AVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEH--QQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIR 169 (704)
Q Consensus 93 ~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~--~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~ 169 (704)
++...+.+|.+.++ ++|.+|+...+.|+ --..+ ...+...|. .|..-|-... +++.-
T Consensus 605 ivStiL~~L~~k~p----------~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~y--------pEvLg 664 (975)
T COG5181 605 IVSTILKLLRSKPP----------DVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDY--------PEVLG 664 (975)
T ss_pred HHHHHHHHhcCCCc----------cHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCccc--------HHHHH
Confidence 46677888888876 89999999988888 22111 112222232 2233333222 37777
Q ss_pred HHHHHHHHhhhcChhhh-hhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCC
Q 005282 170 RAADAITNLAHENANIK-TRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSED 248 (704)
Q Consensus 170 ~a~~~L~~l~~~~~~~~-~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~ 248 (704)
..+.++..+.. ....+ .+--..|++|.|..+|++....+..+.+..++.+|...++....--...+.--|++.|.+-+
T Consensus 665 sil~Ai~~I~s-v~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~n 743 (975)
T COG5181 665 SILKAICSIYS-VHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWN 743 (975)
T ss_pred HHHHHHHHHhh-hhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhh
Confidence 77777777763 22221 12233688999999999999999999999999999877763322222233445788889999
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhh
Q 005282 249 ASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEML 328 (704)
Q Consensus 249 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll 328 (704)
.++|+.|..+++.++.. +.-.+++..|+.-|...+-..+.....+++-.+..... -.++|.|+.=-
T Consensus 744 KeiRR~A~~tfG~Is~a-------iGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp-------fsVlP~lm~dY 809 (975)
T COG5181 744 KEIRRNATETFGCISRA-------IGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP-------FSVLPTLMSDY 809 (975)
T ss_pred HHHHHhhhhhhhhHHhh-------cCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc-------hhhHHHHHhcc
Confidence 99999999999999743 22334555666655544333333333333333211100 13456666555
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCC
Q 005282 329 QSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNE 391 (704)
Q Consensus 329 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 391 (704)
..++..++...+.+++-+-..-.....-.-....+.|-+.|.+.++.-|..|...+.+|+-+.
T Consensus 810 ~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc 872 (975)
T COG5181 810 ETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNC 872 (975)
T ss_pred cCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCC
Confidence 667888999999998888755433322222234455667888889999999999999998653
No 92
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.27 E-value=0.00052 Score=69.96 Aligned_cols=316 Identities=14% Similarity=0.097 Sum_probs=200.8
Q ss_pred CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcC--CCHH
Q 005282 131 VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKF--VDVK 208 (704)
Q Consensus 131 ~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~ 208 (704)
.+|+.+..+.-....+.+..++-++.. +++..+..++..+.. ++..-..+.+.+.--.++.-|.. .+..
T Consensus 13 ~~p~l~~~~~~~~~~~~i~~~lL~~~~--------~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ 83 (371)
T PF14664_consen 13 RHPTLKYDLVLSFFGERIQCMLLSDSK--------EVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDV 83 (371)
T ss_pred hCchhhhhhhHHHHHHHHHHHHCCCcH--------HHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChH
Confidence 444444443333344455544443334 999999999999986 45555557776766666666663 3456
Q ss_pred HHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcC
Q 005282 209 VQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSS 288 (704)
Q Consensus 209 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~ 288 (704)
-|+.|+..++.+..- +.... ....|++..++.+..+.++..+..|+.+|+.++-.+|+ .+...|++..|+..+.+
T Consensus 84 ER~QALkliR~~l~~-~~~~~-~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d 158 (371)
T PF14664_consen 84 EREQALKLIRAFLEI-KKGPK-EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALID 158 (371)
T ss_pred HHHHHHHHHHHHHHh-cCCcc-cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHh
Confidence 688999999998753 22221 23556788999999999999999999999999987764 46689999999999987
Q ss_pred CChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCC-------CH--HHHHHHHHHHHHhhcCCchhhhHHhh
Q 005282 289 SCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSP-------DS--QLKEMSAFALGRLAQDTHNQAGIAQD 359 (704)
Q Consensus 289 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-------~~--~v~~~a~~~L~~l~~~~~~~~~~~~~ 359 (704)
+..++....+.++..+.. .+..+..+...--++.++.-+.+. +. +....+..++..+-..-.+--.+..+
T Consensus 159 ~~~~~~~~l~~~lL~lLd-~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~ 237 (371)
T PF14664_consen 159 GSFSISESLLDTLLYLLD-SPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMN 237 (371)
T ss_pred ccHhHHHHHHHHHHHHhC-CcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecC
Confidence 766788888888888874 555555454433455555544322 22 34556667777776665544443333
Q ss_pred --CChHHHHHhhcCCChhHHHHHHHHHHHccc--CCchhhHH------HhhCCc---ccccc----ccccccc---chHH
Q 005282 360 --GGILPLLKLLDSKNGSLQHNAAFALYGLAD--NEDNVADL------VRVGGV---QKLQD----GEFTVQP---TKDC 419 (704)
Q Consensus 360 --~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~l------~~~g~i---~~l~~----~~~~~~~---~~~~ 419 (704)
.++..|+..|..+++++|......+..+-. .++-...+ ...|-. ..+.+ ....... ....
T Consensus 238 ~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~ 317 (371)
T PF14664_consen 238 DFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPN 317 (371)
T ss_pred CchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCcccccccc
Confidence 578889999999999999999999988865 22211111 111111 00000 0000000 0001
Q ss_pred HHHHHHHH--HHHhhcchhHHHHHHHhhc-cHHHHHHHHHHHHhc
Q 005282 420 VARTLKRL--EEKVHGRVLNHLLYLLRVA-DRAVKRRVTLALAHL 461 (704)
Q Consensus 420 ~~~~~~~~--~~~~~~~~~~~L~~ll~~~-~~~v~~~a~~~L~~l 461 (704)
+.+....+ ...+..|+++.|+.+..+. ++.+...|...|+.+
T Consensus 318 l~~~y~aLll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~el 362 (371)
T PF14664_consen 318 LVNHYLALLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGEL 362 (371)
T ss_pred HHHHHHHHHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 11111111 1223778999999999887 788888888888766
No 93
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.22 E-value=9.7e-06 Score=66.26 Aligned_cols=119 Identities=18% Similarity=0.202 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc
Q 005282 166 GVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR 245 (704)
Q Consensus 166 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~ 245 (704)
+.+++...-|+|++. +|-+...+.+.+++...+..+..++..+.+.+++.|+|+|- ++.+.+.+.+.+++|.++..+.
T Consensus 32 eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~-d~~n~~~I~ea~g~plii~~ls 109 (173)
T KOG4646|consen 32 EAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL-DKTNAKFIREALGLPLIIFVLS 109 (173)
T ss_pred HHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc-ChHHHHHHHHhcCCceEEeecC
Confidence 788888889999997 67778889999999999999999999999999999999996 8899999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHh
Q 005282 246 SEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLL 286 (704)
Q Consensus 246 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll 286 (704)
++...+...++.++..++......+..+....++..+..+-
T Consensus 110 sp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~ 150 (173)
T KOG4646|consen 110 SPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWR 150 (173)
T ss_pred CChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHH
Confidence 99999999999999999977666666666655555555444
No 94
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=0.00028 Score=76.79 Aligned_cols=285 Identities=17% Similarity=0.203 Sum_probs=193.9
Q ss_pred HHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcH
Q 005282 67 AAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALP 146 (704)
Q Consensus 67 ~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~ 146 (704)
++.-++.++.....+.+....+...|.+..|+++|++.+ ..|..++.+|..|+++++......+.|++.
T Consensus 1788 iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lLHS~P-----------S~R~~vL~vLYAL~S~~~i~keA~~hg~l~ 1856 (2235)
T KOG1789|consen 1788 LQILALQVILLATANKECVTDLATCNVLTTLLTLLHSQP-----------SMRARVLDVLYALSSNGQIGKEALEHGGLM 1856 (2235)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHHhcCh-----------HHHHHHHHHHHHHhcCcHHHHHHHhcCchh
Confidence 556677777777778888888999999999999999986 599999999999999999999999999999
Q ss_pred HHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcC---hhhhhhhhc----------cCCcHHHHHHhcC--CCHH---
Q 005282 147 HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHEN---ANIKTRVRV----------EDGIPPLVELLKF--VDVK--- 208 (704)
Q Consensus 147 ~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~----------~~~i~~L~~ll~~--~~~~--- 208 (704)
.+..++..... +..+.+++..++.+..+. |..+--+++ .+.-...+..+.. .+|+
T Consensus 1857 yil~~~c~~~~-------~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiW 1929 (2235)
T KOG1789|consen 1857 YILSILCLTNS-------DQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIW 1929 (2235)
T ss_pred hhhHHHhccCc-------HHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCccccc
Confidence 99988877665 378889999999987432 221111110 1111334444442 2332
Q ss_pred ---HHHHHHHHHHHhcc-------CCch-------------------------hhHHhHhcC------------ChHHHH
Q 005282 209 ---VQRAAAGALRTLAF-------KNDE-------------------------NKKLIVECN------------ALPTLV 241 (704)
Q Consensus 209 ---~~~~a~~~L~~l~~-------~~~~-------------------------~~~~~~~~~------------~i~~L~ 241 (704)
.+......+..+.. +++. +|..+.+.+ .++.++
T Consensus 1930 n~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~l 2009 (2235)
T KOG1789|consen 1930 NEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVL 2009 (2235)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHH
Confidence 23333333333321 1110 122222222 233334
Q ss_pred HhhcCCC--HHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcC
Q 005282 242 LMLRSED--ASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRG 319 (704)
Q Consensus 242 ~lL~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 319 (704)
.++..++ .........++..+....|.....+-..|.+|.++..+...+..+-..|+++|..++. +.-+...+....
T Consensus 2010 elm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lse-n~~C~~AMA~l~ 2088 (2235)
T KOG1789|consen 2010 ELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSE-NQFCCDAMAQLP 2088 (2235)
T ss_pred HHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhh-ccHHHHHHhccc
Confidence 4444332 2334444556666667778877777788999999999988878888999999999975 667777787778
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCch--hhhHHhhCChHHHHHhhcC
Q 005282 320 AVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHN--QAGIAQDGGILPLLKLLDS 371 (704)
Q Consensus 320 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~~~~~L~~ll~~ 371 (704)
.+..++..++.... ....|+.+|..+...... -.+..+.|.++.|+++|..
T Consensus 2089 ~i~~~m~~mkK~~~-~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2089 CIDGIMKSMKKQPS-LMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDS 2141 (2235)
T ss_pred cchhhHHHHHhcch-HHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhcc
Confidence 88888888876544 335789999988863322 3456777999999999975
No 95
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.21 E-value=0.00032 Score=72.38 Aligned_cols=211 Identities=22% Similarity=0.122 Sum_probs=135.7
Q ss_pred hHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHH
Q 005282 94 VPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAAD 173 (704)
Q Consensus 94 i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~ 173 (704)
+..|+..|.+.+. .++..++.+|+.+-. .+..+.|+.+|++.+. .++..++.
T Consensus 88 ~~~L~~~L~d~~~----------~vr~aaa~ALg~i~~----------~~a~~~L~~~L~~~~p--------~vR~aal~ 139 (410)
T TIGR02270 88 LRSVLAVLQAGPE----------GLCAGIQAALGWLGG----------RQAEPWLEPLLAASEP--------PGRAIGLA 139 (410)
T ss_pred HHHHHHHhcCCCH----------HHHHHHHHHHhcCCc----------hHHHHHHHHHhcCCCh--------HHHHHHHH
Confidence 6777777777654 688888888876552 2345677777766544 66666665
Q ss_pred HHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHH
Q 005282 174 AITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHF 253 (704)
Q Consensus 174 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~ 253 (704)
++...- ....+.+..+|++.++.++..|+.+|+.+.. ...++.|...+.+.++.||.
T Consensus 140 al~~r~------------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~-----------~~a~~~L~~al~d~~~~VR~ 196 (410)
T TIGR02270 140 ALGAHR------------HDPGPALEAALTHEDALVRAAALRALGELPR-----------RLSESTLRLYLRDSDPEVRF 196 (410)
T ss_pred HHHhhc------------cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc-----------ccchHHHHHHHcCCCHHHHH
Confidence 555522 1234567777888888888888888887763 23455666777788888888
Q ss_pred HHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCH
Q 005282 254 EAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDS 333 (704)
Q Consensus 254 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~ 333 (704)
.|++++..+-. +. .+..+..+...........+..++... .. ...++.|..+++++.
T Consensus 197 aA~~al~~lG~--~~---------A~~~l~~~~~~~g~~~~~~l~~~lal~--~~---------~~a~~~L~~ll~d~~- 253 (410)
T TIGR02270 197 AALEAGLLAGS--RL---------AWGVCRRFQVLEGGPHRQRLLVLLAVA--GG---------PDAQAWLRELLQAAA- 253 (410)
T ss_pred HHHHHHHHcCC--Hh---------HHHHHHHHHhccCccHHHHHHHHHHhC--Cc---------hhHHHHHHHHhcChh-
Confidence 88888866631 21 233444433333333333333333322 11 146778888887754
Q ss_pred HHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCC
Q 005282 334 QLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNE 391 (704)
Q Consensus 334 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 391 (704)
++..++.+++.+... ..++.|+..+.+. .++..|..++..+++-+
T Consensus 254 -vr~~a~~AlG~lg~p----------~av~~L~~~l~d~--~~aR~A~eA~~~ItG~~ 298 (410)
T TIGR02270 254 -TRREALRAVGLVGDV----------EAAPWCLEAMREP--PWARLAGEAFSLITGMD 298 (410)
T ss_pred -hHHHHHHHHHHcCCc----------chHHHHHHHhcCc--HHHHHHHHHHHHhhCCC
Confidence 888889998866543 3677888888643 49999999999998733
No 96
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.21 E-value=1.3e-06 Score=91.93 Aligned_cols=67 Identities=28% Similarity=0.467 Sum_probs=55.8
Q ss_pred CCcccEEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCCCC------------CCCceEcCCCCHHHHHHHHHHHhcCcc
Q 005282 533 PTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEK------------NAKDVEIPNIRWNVFELMMRFIYTGNV 599 (704)
Q Consensus 533 ~~~~d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~------------~~~~i~l~~~~~~~~~~~l~~~Y~~~~ 599 (704)
..+.||+|.+|+.-|++||.||++||+|||.+|-...+.+ ...+|.+.++++..|+.+|+|+||+..
T Consensus 556 ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mfe~lL~~iYtdt~ 634 (1267)
T KOG0783|consen 556 DSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMFEILLHYIYTDTL 634 (1267)
T ss_pred cccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHHHHHHHHHhcccc
Confidence 3567999999999999999999999999999997543221 123566889999999999999999854
No 97
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=0.00082 Score=73.33 Aligned_cols=349 Identities=17% Similarity=0.149 Sum_probs=210.1
Q ss_pred HHHHHHHHHHHHHhhcChhHHHHHHhC-CChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcC
Q 005282 65 RAAAKTASHALVEFAKNEEIVSLIVDN-GAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTG 143 (704)
Q Consensus 65 ~~~~~~a~~~L~~l~~~~~~~~~l~~~-g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g 143 (704)
..++...++++.-.+.-++.+..+.+. .+|..++.++.-..- |.+...|+.++..++.++..+-.+.++|
T Consensus 1454 v~vc~~v~~c~SVaaQFE~cR~~~~EmPSiI~Dl~r~l~f~~v---------Pr~~~aa~qci~~~aVd~~LQ~~LfqAG 1524 (2235)
T KOG1789|consen 1454 VRVCIHVCDCFSVAAQFEACRQRLMEMPSIIGDLTRLLQFSNL---------PRLSTAAAQCIRAMAVDTLLQFQLFQAG 1524 (2235)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccc---------cHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 335555666666566556666666654 778888888887764 4788999999999999999999999999
Q ss_pred CcHHHHHHHhhccCCCCC------c------chhHHHHHHHHHHHHhhhc---------ChhhhhhhhccCCcHHHHHHh
Q 005282 144 ALPHLVSLLKQYKNGGNS------R------ALSGVIRRAADAITNLAHE---------NANIKTRVRVEDGIPPLVELL 202 (704)
Q Consensus 144 ~l~~L~~lL~~~~~~~~~------~------~~~~~~~~a~~~L~~l~~~---------~~~~~~~~~~~~~i~~L~~ll 202 (704)
++=.|+.+|-..+.+... . ...+....++.+|+.+.+. ++..+. ....-.-|.+...|
T Consensus 1525 ~LWYlLp~Lf~YDyTlEESg~q~Se~~n~Q~~aNslA~~s~~ALSRL~G~~AdE~~TP~N~T~~~-sL~alLTPyiAr~L 1603 (2235)
T KOG1789|consen 1525 VLWYLLPHLFHYDYTLEESGVQHSEDSNKQSLANSLARSSCEALSRLAGFRADEENTPDNDTVQA-SLRALLTPYIARCL 1603 (2235)
T ss_pred hHHHHHHHHhcccccccccCccccccchHHHHHHHHHHHHHHHHHHHhccccccccCCCChhHHH-HHHHhccHHHHHHH
Confidence 999999988664432211 0 0225566777888887631 111111 11111223333333
Q ss_pred cCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcC------------------------------------
Q 005282 203 KFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRS------------------------------------ 246 (704)
Q Consensus 203 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~------------------------------------ 246 (704)
+.. .+-..|..|-. +-++-..+...+.-..|+.++.+
T Consensus 1604 k~e------~~~~iLk~LNs-N~E~Py~IWNn~TRaELLeFve~Qracq~~~G~~D~~yg~eF~Ys~h~KEliVG~ifir 1676 (2235)
T KOG1789|consen 1604 KLE------TNDMVLKTLNS-NMENPYMIWNNGTRAELLEFVERQRACQTSNGPTDELYGAEFEYSVHKKELIVGDIFIR 1676 (2235)
T ss_pred HHH------HHHHHHHHhhc-CCCCceeeecCccHHHHHHHHHHHHhccCCCCCchhhccceeeehhhccceeeeeEEEE
Confidence 311 11112222221 22222222233322233333221
Q ss_pred -----CCHH---HHHHHHHHHHHHhcCChhhH----HHHHHcCCHHHHHHHhc--C----CChhHHHHHHHHHHHHhccC
Q 005282 247 -----EDAS---VHFEAVGVIGNLVHSSPSIK----KEVILAGALQPVIGLLS--S----SCSESKREAALLLGQFAAAD 308 (704)
Q Consensus 247 -----~~~~---v~~~a~~~L~~l~~~~~~~~----~~~~~~~~l~~L~~ll~--~----~~~~~~~~a~~~L~~l~~~~ 308 (704)
++.. -..-|...|-.+.+...... ..-.....+..-..+-. + +...-...++.+|.|+...+
T Consensus 1677 VYNeqPtf~l~ePk~Fa~~LlDyI~S~~~~l~~~~~~~~~s~d~ie~~~~V~sE~HgD~lPs~~~v~m~LtAL~Nli~~n 1756 (2235)
T KOG1789|consen 1677 VYNEQPTFALHEPKKFAIDLLDYIKSHSAELTGAPKPKAISDDLIEIDWGVGSEAHGDSLPTETKVLMTLTALANLVSAN 1756 (2235)
T ss_pred eecCCCchhhcCcHHHHHHHHHHHHHhHHHhcCCCCccccccchhhhhcccchhhhcCCCChHHHHHHHHHHHHHHHhhC
Confidence 0000 11223333333321110000 00000011111111111 1 11223567888999999877
Q ss_pred CcchHHHHh----cCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHH
Q 005282 309 SNSKVHIVQ----RGAVRPLIEMLQS-PDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFA 383 (704)
Q Consensus 309 ~~~~~~~~~----~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~ 383 (704)
++....+.. -|..+.+..++.+ .+++++..|+..+..+..+.+.-..+...+.+..|+.+|++ -|+.|..++..
T Consensus 1757 PdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~v 1835 (2235)
T KOG1789|consen 1757 PDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDV 1835 (2235)
T ss_pred cchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHH
Confidence 765443332 2778888888875 67899999999999999999988899999988889999976 67789999999
Q ss_pred HHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccC
Q 005282 384 LYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCA 463 (704)
Q Consensus 384 L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 463 (704)
|+.|+++++-.+.-.++|++..+.+ -+..+..+..+.+++..++.+..
T Consensus 1836 LYAL~S~~~i~keA~~hg~l~yil~--------------------------------~~c~~~~~QqRAqaAeLlaKl~A 1883 (2235)
T KOG1789|consen 1836 LYALSSNGQIGKEALEHGGLMYILS--------------------------------ILCLTNSDQQRAQAAELLAKLQA 1883 (2235)
T ss_pred HHHHhcCcHHHHHHHhcCchhhhhH--------------------------------HHhccCcHHHHHHHHHHHHHhhh
Confidence 9999999999999999888766432 23345678888899999999943
No 98
>PF05536 Neurochondrin: Neurochondrin
Probab=98.19 E-value=0.00073 Score=72.81 Aligned_cols=241 Identities=16% Similarity=0.147 Sum_probs=164.3
Q ss_pred hHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChh---hHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHH
Q 005282 94 VPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPE---HQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIR 169 (704)
Q Consensus 94 i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~---~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~ 169 (704)
+...+.+|+..+. +-|-.++-.+.++. .++. .++.+.++=+.+.+-++|++...+... +....+.
T Consensus 7 l~~c~~lL~~~~D----------~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~-~~~~~~~ 75 (543)
T PF05536_consen 7 LEKCLSLLKSADD----------TERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDC-PPEEYLS 75 (543)
T ss_pred HHHHHHHhccCCc----------HHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCC-CHHHHHH
Confidence 5677888888865 77888888999999 4432 344688888889999999986533221 2347888
Q ss_pred HHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCH-HHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCC
Q 005282 170 RAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDV-KVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSED 248 (704)
Q Consensus 170 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~ 248 (704)
-|+..|+.+|. .|+....-.-.+-||.|+..+.+.+. .+...++.+|..++ ..++.++.+.+.|+++.|.+.+.+ .
T Consensus 76 LavsvL~~f~~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~ 152 (543)
T PF05536_consen 76 LAVSVLAAFCR-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-Q 152 (543)
T ss_pred HHHHHHHHHcC-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-C
Confidence 89999999997 55554433444668999999987766 99999999999999 599999999999999999999977 6
Q ss_pred HHHHHHHHHHHHHHhcCChhhH---HHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcc-hHHHHhcC----C
Q 005282 249 ASVHFEAVGVIGNLVHSSPSIK---KEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNS-KVHIVQRG----A 320 (704)
Q Consensus 249 ~~v~~~a~~~L~~l~~~~~~~~---~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~----~ 320 (704)
+.....++.++.+++....... ..-.-..+++.+-..+.......+...+..|..+....+.. .......+ +
T Consensus 153 ~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l 232 (543)
T PF05536_consen 153 SFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDL 232 (543)
T ss_pred cchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHH
Confidence 6778889999988875432110 00001123445555555555666777888888876544211 11122222 3
Q ss_pred hHHHHHhhCC-CCHHHHHHHHHHHHHhhc
Q 005282 321 VRPLIEMLQS-PDSQLKEMSAFALGRLAQ 348 (704)
Q Consensus 321 i~~L~~ll~~-~~~~v~~~a~~~L~~l~~ 348 (704)
...+..++++ ..+.-|..+......+..
T Consensus 233 ~~gl~~iL~sr~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 233 RKGLRDILQSRLTPSQRDPALNLAASLLD 261 (543)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3445555555 345556666655555553
No 99
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.18 E-value=7.3e-05 Score=77.59 Aligned_cols=324 Identities=16% Similarity=0.099 Sum_probs=196.3
Q ss_pred HHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc
Q 005282 166 GVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR 245 (704)
Q Consensus 166 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~ 245 (704)
.+++....+|..+...... .......+.+.+++...+..-+..+.+.++.+.. ......+.+.+++..+.+.+.
T Consensus 111 ~~q~~~~~~l~~~~~~~~~----~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~--g~~i~~~~~~~~l~~l~~ai~ 184 (569)
T KOG1242|consen 111 SVQRAVSTCLPPLVVLSKG----LSGEYVLELLLELLTSTKIAERAGAAYGLAGLVN--GLGIESLKEFGFLDNLSKAII 184 (569)
T ss_pred HHHHHHHHHhhhHHHHhhc----cCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHc--CcHHhhhhhhhHHHHHHHHhc
Confidence 7777777777776532211 1112345678888888888999999999999985 445566677788899999988
Q ss_pred CCCHHHHHH-HHHHHHHHhcCChhhHHHHHHcCC---HHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCCh
Q 005282 246 SEDASVHFE-AVGVIGNLVHSSPSIKKEVILAGA---LQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAV 321 (704)
Q Consensus 246 ~~~~~v~~~-a~~~L~~l~~~~~~~~~~~~~~~~---l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i 321 (704)
+.....++. +..+....+..-. ...+... ++.++.-+.+..+.+|..|..+...+...-+..... -++
T Consensus 185 dk~~~~~re~~~~a~~~~~~~Lg----~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK----~ll 256 (569)
T KOG1242|consen 185 DKKSALNREAALLAFEAAQGNLG----PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK----LLL 256 (569)
T ss_pred ccchhhcHHHHHHHHHHHHHhcC----CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh----Hhh
Confidence 766555543 3222222221100 1112233 444455555677788887777766654332222111 134
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhh--HHHh
Q 005282 322 RPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVA--DLVR 399 (704)
Q Consensus 322 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~--~l~~ 399 (704)
+.++.-+.......+..++..++.++...+.+........++.+.+.|.++.+++|+.+..+|..++.-.++-. .++-
T Consensus 257 psll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip 336 (569)
T KOG1242|consen 257 PSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIP 336 (569)
T ss_pred hhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 55554444446677889999999999988888888888999999999999999999999999999986333322 2221
Q ss_pred hCCcccccccccccccchHHHHHHHHHHH-HHhhcc----hhHHHHHHHhhccHHHHHHHHHHHHhccCCCccceeeec-
Q 005282 400 VGGVQKLQDGEFTVQPTKDCVARTLKRLE-EKVHGR----VLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFID- 473 (704)
Q Consensus 400 ~g~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~- 473 (704)
. +++.+.+..- ...+|+-......- .-+... +++.|.+-+...+..++..++.++.|+|.--+....+..
T Consensus 337 ~-Lld~l~dp~~---~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapf 412 (569)
T KOG1242|consen 337 T-LLDALADPSC---YTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPF 412 (569)
T ss_pred H-HHHHhcCccc---chHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhh
Confidence 1 1111111110 11112111110000 000112 334444445556778899999999999763322211111
Q ss_pred -CCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhcC
Q 005282 474 -NNGLELLLGLLESTSVKQREESSVALYKLATKAT 507 (704)
Q Consensus 474 -~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~ 507 (704)
...+|-|...+....|++|.-++.+|+.+.+...
T Consensus 413 l~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g 447 (569)
T KOG1242|consen 413 LPSLLPGLKENLDDAVPEVRAVAARALGALLERLG 447 (569)
T ss_pred HHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHH
Confidence 1335555556666789999999999988877664
No 100
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.16 E-value=0.00035 Score=71.26 Aligned_cols=256 Identities=19% Similarity=0.129 Sum_probs=176.0
Q ss_pred HHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCC--ChhHH
Q 005282 217 LRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSS--CSESK 294 (704)
Q Consensus 217 L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~~~ 294 (704)
|..+....+..+..+.-....+.+..++-+++.+++..+.+++..+..+ +...+.+.+.+.--.++.-|..+ +..-+
T Consensus 7 Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d-~~~l~~~~~l~id~~ii~SL~~~~~~~~ER 85 (371)
T PF14664_consen 7 LVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISD-EESLQILLKLHIDIFIIRSLDRDNKNDVER 85 (371)
T ss_pred HHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcC-HHHHHHHHHcCCchhhHhhhcccCCChHHH
Confidence 3334334555555554444556666555556699999999999999866 55566677766544555545332 33348
Q ss_pred HHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCCh
Q 005282 295 REAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNG 374 (704)
Q Consensus 295 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~ 374 (704)
.+|...+..+..-... . ..+..|++..++.+..+.+...+..|..+|+.++-..+ ..+...||+..+++.+.++..
T Consensus 86 ~QALkliR~~l~~~~~-~-~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l~d~~~ 161 (371)
T PF14664_consen 86 EQALKLIRAFLEIKKG-P-KEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP--ELVAECGGIRVLLRALIDGSF 161 (371)
T ss_pred HHHHHHHHHHHHhcCC-c-ccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHHHhccH
Confidence 8999988888754221 1 12346789999999999999999999999999997544 456788999999999877777
Q ss_pred hHHHHHHHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHH---HhhccH--H
Q 005282 375 SLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYL---LRVADR--A 449 (704)
Q Consensus 375 ~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l---l~~~~~--~ 449 (704)
++....+.++..+-.+|..++.+...--++.+. .++... -..++. +
T Consensus 162 ~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~-----------------------------apftd~~~~~~~~~~~~~ 212 (371)
T PF14664_consen 162 SISESLLDTLLYLLDSPRTRKYLRPGFDLESLL-----------------------------APFTDFHYRKIKDDRELE 212 (371)
T ss_pred hHHHHHHHHHHHHhCCcchhhhhcCCccHHHHH-----------------------------HhhhhhhccccccchHHH
Confidence 788899999999999998887765422222211 111111 011222 3
Q ss_pred HHHHHHHHHHhccCCCccceeeecC--CcHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282 450 VKRRVTLALAHLCAPDDCKTIFIDN--NGLELLLGLLESTSVKQREESSVALYKLATKA 506 (704)
Q Consensus 450 v~~~a~~~L~~l~~~~~~~~~l~~~--~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 506 (704)
....+..++..+-++..+-..+... .|++.|+..+..+++++|......+..+-+-+
T Consensus 213 ~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik 271 (371)
T PF14664_consen 213 RLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIK 271 (371)
T ss_pred HHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC
Confidence 4556777777776655555555544 59999999999999999999999998887733
No 101
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.15 E-value=9.2e-06 Score=74.23 Aligned_cols=155 Identities=18% Similarity=0.226 Sum_probs=96.9
Q ss_pred CCcHHHHHHHHhh---cchhhhhhHHHHHHHHhhhcCCCCCCCCCCCCCchhhchHHhhhcCCCccc-EEEEE-cC----
Q 005282 474 NNGLELLLGLLES---TSVKQREESSVALYKLATKATSLSPMDAAPPSPTQQVYLGEQFVNNPTLSD-VTFVV-EG---- 544 (704)
Q Consensus 474 ~~~i~~L~~ll~~---~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d-~~~~~-~~---- 544 (704)
...+..++..+.. +..+..-.-...|.+|+.+-.-...+ ..++ +.+++.-.+.| +.+.+ +|
T Consensus 181 m~~feafLh~l~tgEfgmEd~~fqn~diL~QL~edFG~~kkL---------d~Dm-kglfd~~c~~d~li~~ssD~elve 250 (401)
T KOG2838|consen 181 MDAFEAFLHSLITGEFGMEDLGFQNSDILEQLCEDFGCFKKL---------DEDM-KGLFDQDCKHDDLIIESSDGELVE 250 (401)
T ss_pred hHHHHHHHHHHHhcccchhhcCCchHHHHHHHHHhhCCchhh---------hHHH-HHHHHhhcccCcEEEEeccchhhh
Confidence 3455555554432 33445545567788888765322221 1222 34444444444 44333 22
Q ss_pred ----------eEeehhHHHHhhcCHHHHHhhcCCCCCCC---------CCceEcCC--CCHHHHHHHHHHHhcCccccC-
Q 005282 545 ----------KQFYAHRICLLASSDAFRAMFDGGYKEKN---------AKDVEIPN--IRWNVFELMMRFIYTGNVDVS- 602 (704)
Q Consensus 545 ----------~~~~~hk~iL~~~s~~f~~~f~~~~~e~~---------~~~i~l~~--~~~~~~~~~l~~~Y~~~~~~~- 602 (704)
.+++|||.|.++||+|||.++.....+++ ...|.+.+ ++..--..|++++||+.++++
T Consensus 251 afggeeNc~deeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE~I~PkafA~i~lhclYTD~lDlSl 330 (401)
T KOG2838|consen 251 AFGGEENCEDEEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDELIFPKAFAPIFLHCLYTDRLDLSL 330 (401)
T ss_pred hcCCcccchhHHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechhhhcchhhhhhhhhhheecccchhh
Confidence 46999999999999999999975443322 12455554 444455678999999977532
Q ss_pred ---------------------------hhhHHHHHHHHhhhChHhHHHHHHHHHHhhCChhhH
Q 005282 603 ---------------------------VDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENI 638 (704)
Q Consensus 603 ---------------------------~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~~ 638 (704)
...+++|+++|-+|.++-|.+.|+..+......++.
T Consensus 331 ~hkce~SigSLSeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQa~e~Vir~acaadls 393 (401)
T KOG2838|consen 331 AHKCEDSIGSLSEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQACEDVIRKACAADLS 393 (401)
T ss_pred cccCCcccccHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 124568888899999999999998888776655543
No 102
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.14 E-value=0.00039 Score=76.27 Aligned_cols=406 Identities=18% Similarity=0.136 Sum_probs=257.1
Q ss_pred hhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc---CChhhHHHH
Q 005282 63 TDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA---VKPEHQQII 139 (704)
Q Consensus 63 ~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~---~~~~~~~~~ 139 (704)
..+.++..++.-+.+++..-+. ....++.++.+.++..+... .|+..|...+.++. ..+. =
T Consensus 249 ~~~~Vr~~~a~~l~~~a~~~~~--~~~~s~v~~~~~~L~~Ddqd----------sVr~~a~~~~~~l~~l~~~~~----d 312 (759)
T KOG0211|consen 249 DTPMVRRAVASNLGNIAKVLES--EIVKSEVLPTLIQLLRDDQD----------SVREAAVESLVSLLDLLDDDD----D 312 (759)
T ss_pred cchhhHHHHHhhhHHHHHHHHH--HHHHhhccHHHhhhhhcchh----------hHHHHHHHHHHHHHHhcCCch----h
Confidence 4455677777888877764322 55678899999999998876 89999999988888 2221 1
Q ss_pred HHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHH
Q 005282 140 VDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRT 219 (704)
Q Consensus 140 ~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~ 219 (704)
......+.+++...+..- .++.........++..-. ........+++...+++....+.+..+..-...
T Consensus 313 ~~~~~~~~l~~~~~d~~~--------~v~~~~~~~~~~L~~~~~---~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~ 381 (759)
T KOG0211|consen 313 VVKSLTESLVQAVEDGSW--------RVSYMVADKFSELSSAVG---PSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQK 381 (759)
T ss_pred hhhhhhHHHHHHhcChhH--------HHHHHHhhhhhhHHHHhc---cccCcccchhhHHHHhcchhhhhhHHhhcchHH
Confidence 112344666666665442 565555555555553211 123334557788888888888888777777776
Q ss_pred hccC-CchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHH
Q 005282 220 LAFK-NDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAA 298 (704)
Q Consensus 220 l~~~-~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~ 298 (704)
++.. +......+....++|.+-.+..+.+..++...+..+..+....+ ..-.-....+.++..+++..+.++.+..
T Consensus 382 l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~---k~~ti~~llp~~~~~l~de~~~V~lnli 458 (759)
T KOG0211|consen 382 LACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP---KERTISELLPLLIGNLKDEDPIVRLNLI 458 (759)
T ss_pred HhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC---cCcCccccChhhhhhcchhhHHHHHhhH
Confidence 6542 33444555566668888888888899999988888877764332 1111134567778888888999999988
Q ss_pred HHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHH
Q 005282 299 LLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQH 378 (704)
Q Consensus 299 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~ 378 (704)
+.+..+-...+........+..++.+..+.......++.+..+.+..++.... ..+.....-+.+...+.+...++++
T Consensus 459 ~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~--~~~~~~~~~~l~~~~l~d~v~~Ir~ 536 (759)
T KOG0211|consen 459 DKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG--VEFFDEKLAELLRTWLPDHVYSIRE 536 (759)
T ss_pred HHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh--hHHhhHHHHHHHHhhhhhhHHHHHH
Confidence 87766544344434445556677888887777778888888888888875433 2233333333445556667778999
Q ss_pred HHHHHHHHccc--C-CchhhHHHhhCCcccccccccccccchHHHHHHHHHHHH-----HhhcchhHHHHHHHhhccHHH
Q 005282 379 NAAFALYGLAD--N-EDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEE-----KVHGRVLNHLLYLLRVADRAV 450 (704)
Q Consensus 379 ~a~~~L~~l~~--~-~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~L~~ll~~~~~~v 450 (704)
.|+..+..++. . .-.+..++.. .+....+..+.. .......+..+.+ .....+++.+..+..+..+.|
T Consensus 537 ~aa~~l~~l~~~~G~~w~~~~~i~k-~L~~~~q~~y~~---R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanV 612 (759)
T KOG0211|consen 537 AAARNLPALVETFGSEWARLEEIPK-LLAMDLQDNYLV---RMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANV 612 (759)
T ss_pred HHHHHhHHHHHHhCcchhHHHhhHH-HHHHhcCcccch---hhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhh
Confidence 99998888873 1 1112211110 000000111111 1122223333332 336678899999999999999
Q ss_pred HHHHHHHHHhccCCCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282 451 KRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKA 506 (704)
Q Consensus 451 ~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 506 (704)
+.+++..|..+...-.. ...+....+.+..+..+.+.+++.+|..+...+....
T Consensus 613 R~nvak~L~~i~~~L~~--~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~~ 666 (759)
T KOG0211|consen 613 RINVAKHLPKILKLLDE--SVRDEEVLPLLETLSSDQELDVRYRAILAFGSIELSR 666 (759)
T ss_pred hhhHHHHHHHHHhhcch--HHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHHHH
Confidence 99999999888432211 1223445667777777889999999988777665433
No 103
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.10 E-value=0.0015 Score=64.92 Aligned_cols=267 Identities=17% Similarity=0.176 Sum_probs=196.7
Q ss_pred HHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCCh----------hhHHH
Q 005282 69 KTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKP----------EHQQI 138 (704)
Q Consensus 69 ~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~----------~~~~~ 138 (704)
...+..+.-++.-|+.-..+++.++++.|+++|...+. ++.......|..+.+.. ...+.
T Consensus 102 hd~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNt----------DI~iavvdLLqELTD~Dv~~es~egAevLida 171 (536)
T KOG2734|consen 102 HDIIQEMHVLATMPDLYPILVELNAVQSLLELLGHENT----------DIAIAVVDLLQELTDEDVLYESEEGAEVLIDA 171 (536)
T ss_pred HHHHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCc----------hhHHHHHHHHHHhhhhcccccccccHHHHHHH
Confidence 34556666677778888888999999999999999988 89999999999988321 23456
Q ss_pred HHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcC--CCHHHHHHHHHH
Q 005282 139 IVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKF--VDVKVQRAAAGA 216 (704)
Q Consensus 139 ~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~ 216 (704)
+++.++++.|++-+..-+.+...+ -.-...++..+-|+..-.+.....+++.|.+.-|+.-+.. +-......|..+
T Consensus 172 Lvdg~vlaLLvqnveRLdEsvkee--a~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEi 249 (536)
T KOG2734|consen 172 LVDGQVLALLVQNVERLDESVKEE--ADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEI 249 (536)
T ss_pred HHhccHHHHHHHHHHHhhhcchhh--hhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHH
Confidence 778899999999987765432221 1456677888889888788888888888887777764442 344567788888
Q ss_pred HHHhccCCchhhHHhHhcCChHHHHHhhc-----C---C-CHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhc
Q 005282 217 LRTLAFKNDENKKLIVECNALPTLVLMLR-----S---E-DASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLS 287 (704)
Q Consensus 217 L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-----~---~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~ 287 (704)
+.-+..++.+++......+++..+++-+. + . ..+..+....+|+.+... +..+..+....++....-+++
T Consensus 250 Laillq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~-~~nr~~Fl~~EGlqLm~Lmlr 328 (536)
T KOG2734|consen 250 LAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMA-PANRERFLKGEGLQLMNLMLR 328 (536)
T ss_pred HHHHhccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcC-hhhhhhhhccccHHHHHHHHH
Confidence 88888878889998989999999988765 2 1 235667777888887755 777888888888887776666
Q ss_pred CCChhHHHHHHHHHHHHhccCC--cchHHHHhcCChHHHHHhhC-CC---------CHHHHHHHHHHHHHhhcC
Q 005282 288 SSCSESKREAALLLGQFAAADS--NSKVHIVQRGAVRPLIEMLQ-SP---------DSQLKEMSAFALGRLAQD 349 (704)
Q Consensus 288 ~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~~i~~L~~ll~-~~---------~~~v~~~a~~~L~~l~~~ 349 (704)
. ....+..+..+|.....+.+ +++..+++..++..+..+.- .+ ..+.-++.+..|+.+-.+
T Consensus 329 ~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~ 401 (536)
T KOG2734|consen 329 E-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRN 401 (536)
T ss_pred H-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHh
Confidence 5 34557788889988877655 66777777777766666543 21 235566777777776654
No 104
>PF05536 Neurochondrin: Neurochondrin
Probab=98.10 E-value=0.0039 Score=67.28 Aligned_cols=201 Identities=14% Similarity=0.136 Sum_probs=135.0
Q ss_pred HHHHhhhccCCchhhHHHHHHHHHHHHHhhcC-h---hHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHH
Q 005282 50 QIDILNSKFSSDETDRAAAKTASHALVEFAKN-E---EIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFA 125 (704)
Q Consensus 50 l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~-~---~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~ 125 (704)
.++.+..+++...++ .+..++-.+.++..+ + ..++.+.++=+.+.+-++|.....+...+ ....+.-|+.+
T Consensus 6 ~l~~c~~lL~~~~D~--~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~---~~~~~~Lavsv 80 (543)
T PF05536_consen 6 SLEKCLSLLKSADDT--ERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCP---PEEYLSLAVSV 80 (543)
T ss_pred HHHHHHHHhccCCcH--HHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCC---HHHHHHHHHHH
Confidence 344455555433322 467777777777763 2 33445778877899999999865422221 24788889999
Q ss_pred HHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCC
Q 005282 126 LGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFV 205 (704)
Q Consensus 126 L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~ 205 (704)
|+.++..|+....---.+-||.|+..+.+... .++...|..+|..++ ..++.+..+.+.|+++.|.+.+.+
T Consensus 81 L~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~-------~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~- 151 (543)
T PF05536_consen 81 LAAFCRDPELASSPQMVSRIPLLLEILSSSSD-------LETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN- 151 (543)
T ss_pred HHHHcCChhhhcCHHHHHHHHHHHHHHHcCCc-------hhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-
Confidence 99999888765432333679999999988765 278899999999999 578889999999999999999987
Q ss_pred CHHHHHHHHHHHHHhccCCchhhHHhHh-----cCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q 005282 206 DVKVQRAAAGALRTLAFKNDENKKLIVE-----CNALPTLVLMLRSEDASVHFEAVGVIGNLVHSS 266 (704)
Q Consensus 206 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~-----~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 266 (704)
.+...+.|+.++.+++.... .+...+ ..+++.+-..+.......+...+..|..+....
T Consensus 152 ~~~~~E~Al~lL~~Lls~~~--~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~ 215 (543)
T PF05536_consen 152 QSFQMEIALNLLLNLLSRLG--QKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRS 215 (543)
T ss_pred CcchHHHHHHHHHHHHHhcc--hhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcC
Confidence 56678888888888875322 111100 012333444444444455556666666665443
No 105
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=0.0023 Score=68.18 Aligned_cols=363 Identities=18% Similarity=0.158 Sum_probs=227.6
Q ss_pred HHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHH
Q 005282 95 PALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADA 174 (704)
Q Consensus 95 ~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~ 174 (704)
.-|.++|.+... ....+..=++++.++.+.+. ...+|.+++...+.+. +++.-.--.
T Consensus 38 ~dL~~lLdSnkd---------~~KleAmKRIia~iA~G~dv------S~~Fp~VVKNVaskn~--------EVKkLVyvY 94 (968)
T KOG1060|consen 38 DDLKQLLDSNKD---------SLKLEAMKRIIALIAKGKDV------SLLFPAVVKNVASKNI--------EVKKLVYVY 94 (968)
T ss_pred HHHHHHHhcccc---------HHHHHHHHHHHHHHhcCCcH------HHHHHHHHHHhhccCH--------HHHHHHHHH
Confidence 457888888765 34444444566666655543 2345777777777665 888888888
Q ss_pred HHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHH
Q 005282 175 ITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFE 254 (704)
Q Consensus 175 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~ 254 (704)
|...+...++.. .=-|..+-+-|+++|+.+|..|+++|..+=. +..... .+-.+-+...+..+.||..
T Consensus 95 LlrYAEeqpdLA-----LLSIntfQk~L~DpN~LiRasALRvlSsIRv--p~IaPI-----~llAIk~~~~D~s~yVRk~ 162 (968)
T KOG1060|consen 95 LLRYAEEQPDLA-----LLSINTFQKALKDPNQLIRASALRVLSSIRV--PMIAPI-----MLLAIKKAVTDPSPYVRKT 162 (968)
T ss_pred HHHHhhcCCCce-----eeeHHHHHhhhcCCcHHHHHHHHHHHHhcch--hhHHHH-----HHHHHHHHhcCCcHHHHHH
Confidence 888887665431 1236778888999999999999998887753 111111 1223445556889999999
Q ss_pred HHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHH
Q 005282 255 AVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQ 334 (704)
Q Consensus 255 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~ 334 (704)
|+.+|-.+-.-+++... ..+..+-.+|.+.++-+...|+.+...+|. +....+ ++-...|+.++..-+..
T Consensus 163 AA~AIpKLYsLd~e~k~-----qL~e~I~~LLaD~splVvgsAv~AF~evCP---erldLI--HknyrklC~ll~dvdeW 232 (968)
T KOG1060|consen 163 AAHAIPKLYSLDPEQKD-----QLEEVIKKLLADRSPLVVGSAVMAFEEVCP---ERLDLI--HKNYRKLCRLLPDVDEW 232 (968)
T ss_pred HHHhhHHHhcCChhhHH-----HHHHHHHHHhcCCCCcchhHHHHHHHHhch---hHHHHh--hHHHHHHHhhccchhhh
Confidence 99999999877666554 345677788899999999999999988864 333333 45577788888776666
Q ss_pred HHHHHHHHHHHhhcCC---chh----------------------hhHHhhCChHHHH----HhhcCCChhHHHHHHHHHH
Q 005282 335 LKEMSAFALGRLAQDT---HNQ----------------------AGIAQDGGILPLL----KLLDSKNGSLQHNAAFALY 385 (704)
Q Consensus 335 v~~~a~~~L~~l~~~~---~~~----------------------~~~~~~~~~~~L~----~ll~~~~~~v~~~a~~~L~ 385 (704)
-|..+..+|..-+... +.. .....+.-+..|+ .++.+.++.|...++.+.+
T Consensus 233 gQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y 312 (968)
T KOG1060|consen 233 GQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFY 312 (968)
T ss_pred hHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHH
Confidence 6666777777666431 100 1111122233344 3557789999999999999
Q ss_pred HcccCCchhhHHHh--------hCCccccc-----------cccc-------cc---ccchHHH--HHHHHHHHH-Hhhc
Q 005282 386 GLADNEDNVADLVR--------VGGVQKLQ-----------DGEF-------TV---QPTKDCV--ARTLKRLEE-KVHG 433 (704)
Q Consensus 386 ~l~~~~~~~~~l~~--------~g~i~~l~-----------~~~~-------~~---~~~~~~~--~~~~~~~~~-~~~~ 433 (704)
.++-..+.. .|++ ...++..+ ...| -+ .+..-++ ...+..+.. ...+
T Consensus 313 ~lAP~~~~~-~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~ 391 (968)
T KOG1060|consen 313 HLAPKNQVT-KIAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNIS 391 (968)
T ss_pred hhCCHHHHH-HHHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHH
Confidence 998533221 1111 11211111 0000 00 0000011 111222221 2244
Q ss_pred chhHHHHHHHhhccHHHHHHHHHHHHhccCCCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhcC
Q 005282 434 RVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKAT 507 (704)
Q Consensus 434 ~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~ 507 (704)
.+++.+..++.+.+..+...+..+|+.++..... .....+.-|+.++.+.+..|-..|..++..|....+
T Consensus 392 ~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s----v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p 461 (968)
T KOG1060|consen 392 EILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS----VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDP 461 (968)
T ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc----hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhCh
Confidence 5777788888888877777888888888543211 234567789999998888888889999998888664
No 106
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=0.00052 Score=68.04 Aligned_cols=231 Identities=17% Similarity=0.193 Sum_probs=174.0
Q ss_pred HHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC-----c----hhhHHhHhcCChHHHHHh
Q 005282 173 DAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKN-----D----ENKKLIVECNALPTLVLM 243 (704)
Q Consensus 173 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-----~----~~~~~~~~~~~i~~L~~l 243 (704)
.-+.-++ .-|.....+++.++++.|+.+|.+.+.++....+..+..|+..+ . .....+++.++++.|++-
T Consensus 106 Q~mhvlA-t~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqn 184 (536)
T KOG2734|consen 106 QEMHVLA-TMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQN 184 (536)
T ss_pred HHHHhhh-cChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHH
Confidence 3344455 36777778999999999999999999999999999999997521 1 234556778899999988
Q ss_pred hcCCCH------HHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCC--ChhHHHHHHHHHHHHhccCCcchHHH
Q 005282 244 LRSEDA------SVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSS--CSESKREAALLLGQFAAADSNSKVHI 315 (704)
Q Consensus 244 L~~~~~------~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~ 315 (704)
+..-+. .-...++..+-|+..-.+.....+++.|.+..|+.-+... -..-...|..+|+-+...+.+++..+
T Consensus 185 veRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~ 264 (536)
T KOG2734|consen 185 VERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLL 264 (536)
T ss_pred HHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhh
Confidence 873333 3345778889999988888889889889999988755432 22335667777777776666788888
Q ss_pred HhcCChHHHHHhhC----CC-----CHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHH
Q 005282 316 VQRGAVRPLIEMLQ----SP-----DSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYG 386 (704)
Q Consensus 316 ~~~~~i~~L~~ll~----~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~ 386 (704)
..-.++..++.-+. .+ ..+..++...+|+.+...+.++..+....|++...-+++. ....+..+..+|-.
T Consensus 265 ~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~ 343 (536)
T KOG2734|consen 265 GPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDH 343 (536)
T ss_pred cCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHH
Confidence 88888888888763 11 3467788888999999999999999999888765555554 55567788889988
Q ss_pred cccCC---chhhHHHhhCCccc
Q 005282 387 LADNE---DNVADLVRVGGVQK 405 (704)
Q Consensus 387 l~~~~---~~~~~l~~~g~i~~ 405 (704)
...++ +++..+++.+|+..
T Consensus 344 am~g~~gt~~C~kfVe~lGLrt 365 (536)
T KOG2734|consen 344 AMFGPEGTPNCNKFVEILGLRT 365 (536)
T ss_pred HHhCCCchHHHHHHHHHHhHHH
Confidence 87654 46788888777655
No 107
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=0.0038 Score=66.59 Aligned_cols=339 Identities=19% Similarity=0.199 Sum_probs=193.7
Q ss_pred hhHHHHHHHHHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHH
Q 005282 63 TDRAAAKTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIV 140 (704)
Q Consensus 63 ~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~ 140 (704)
..+.++..|+.++..+.. +++....+ +..+-.+|.+.++ -|.-.|+.+.-.+| ..- +.+
T Consensus 155 ~s~yVRk~AA~AIpKLYsLd~e~k~qL-----~e~I~~LLaD~sp----------lVvgsAv~AF~evCPerl---dLI- 215 (968)
T KOG1060|consen 155 PSPYVRKTAAHAIPKLYSLDPEQKDQL-----EEVIKKLLADRSP----------LVVGSAVMAFEEVCPERL---DLI- 215 (968)
T ss_pred CcHHHHHHHHHhhHHHhcCChhhHHHH-----HHHHHHHhcCCCC----------cchhHHHHHHHHhchhHH---HHh-
Confidence 345577777777777766 56655544 4555566666654 67777777777777 221 111
Q ss_pred HcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhc---Chhh---------------------hhhhhccCCcH
Q 005282 141 DTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHE---NANI---------------------KTRVRVEDGIP 196 (704)
Q Consensus 141 ~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~---~~~~---------------------~~~~~~~~~i~ 196 (704)
++-...++++|.+-+. |. +......|...|.. .|.. +.-+....-+.
T Consensus 216 -HknyrklC~ll~dvde-------Wg-QvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~ 286 (968)
T KOG1060|consen 216 -HKNYRKLCRLLPDVDE-------WG-QVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLK 286 (968)
T ss_pred -hHHHHHHHhhccchhh-------hh-HHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHH
Confidence 2345566666665442 11 11222223332311 1100 00000011122
Q ss_pred HH----HHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 005282 197 PL----VELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKE 272 (704)
Q Consensus 197 ~L----~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 272 (704)
.| -.++.+.++.+..+++.+.+.++- . ++. ..++..|+++|++ +..++...+..+..++...+..
T Consensus 287 lLL~stkpLl~S~n~sVVmA~aql~y~lAP--~-~~~----~~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~~~~l--- 355 (968)
T KOG1060|consen 287 LLLQSTKPLLQSRNPSVVMAVAQLFYHLAP--K-NQV----TKIAKALVRLLRS-NREVQYVVLQNIATISIKRPTL--- 355 (968)
T ss_pred HHHHhccHHHhcCCcHHHHHHHhHHHhhCC--H-HHH----HHHHHHHHHHHhc-CCcchhhhHHHHHHHHhcchhh---
Confidence 23 345668889999999999999983 2 111 2246778888864 5677788888888777554332
Q ss_pred HHHcCCHHHHHHHh-cCCC-hhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q 005282 273 VILAGALQPVIGLL-SSSC-SESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDT 350 (704)
Q Consensus 273 ~~~~~~l~~L~~ll-~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 350 (704)
+-|.+-.+. .+.+ ..+...-+..|.+++. +.+... +++.+....++.+..+...+..+|+.++...
T Consensus 356 -----F~P~lKsFfv~ssDp~~vk~lKleiLs~La~--esni~~-----ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~ 423 (968)
T KOG1060|consen 356 -----FEPHLKSFFVRSSDPTQVKILKLEILSNLAN--ESNISE-----ILRELQTYIKSSDRSFAAAAVKAIGRCASRI 423 (968)
T ss_pred -----hhhhhhceEeecCCHHHHHHHHHHHHHHHhh--hccHHH-----HHHHHHHHHhcCchhHHHHHHHHHHHHHHhh
Confidence 234444333 2333 3345555667888873 344333 3667777888888888889999999988653
Q ss_pred chhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHccc-CCchh-hHHHh-hCCcccccccccccccchHHHHHHHHHH
Q 005282 351 HNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD-NEDNV-ADLVR-VGGVQKLQDGEFTVQPTKDCVARTLKRL 427 (704)
Q Consensus 351 ~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~-~~l~~-~g~i~~l~~~~~~~~~~~~~~~~~~~~~ 427 (704)
.. +....+..|+.++.+.+..|...++..+..|.. +|... +.+.+ +..++.+ .+.....++.+.+...
T Consensus 424 ~s----v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~ii~~La~lldti-----~vp~ARA~IiWLige~ 494 (968)
T KOG1060|consen 424 GS----VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLEILFQLARLLDTI-----LVPAARAGIIWLIGEY 494 (968)
T ss_pred Cc----hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHHHHHHHHHHhhhh-----hhhhhhceeeeeehhh
Confidence 21 334456778999999999999999999988886 33322 22222 1111111 1111222333333333
Q ss_pred HH---HhhcchhHHHHHHHhhccHHHHHHHHHHHHhc
Q 005282 428 EE---KVHGRVLNHLLYLLRVADRAVKRRVTLALAHL 461 (704)
Q Consensus 428 ~~---~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l 461 (704)
.+ .+..+++..+..-..++.+.++.+++.....|
T Consensus 495 ~e~vpri~PDVLR~laksFs~E~~evKlQILnL~aKL 531 (968)
T KOG1060|consen 495 CEIVPRIAPDVLRKLAKSFSDEGDEVKLQILNLSAKL 531 (968)
T ss_pred hhhcchhchHHHHHHHHhhccccchhhHHHHHhhhhh
Confidence 33 33455666666666777778887777666666
No 108
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=97.96 E-value=4.9e-05 Score=70.02 Aligned_cols=95 Identities=28% Similarity=0.490 Sum_probs=79.3
Q ss_pred EEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCC-CCCCCceEcCCCCHHHHHHHHHHHhcCccccCh--hhHHHHHHHHh
Q 005282 538 VTFVVEGKQFYAHRICLLASSDAFRAMFDGGYK-EKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSV--DIAQDLLRAAD 614 (704)
Q Consensus 538 ~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~-e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~--~~~~~ll~~A~ 614 (704)
+.+-+||+.|..++.-|.....||++|+.+++. +.+...-.+-|=+|..|..+|.|+=+|++.++. ..+.+|+.=|.
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFIDRSpKHF~~ILNfmRdGdv~LPe~~kel~El~~EA~ 86 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFIDRSPKHFDTILNFMRDGDVDLPESEKELKELLREAE 86 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEecCChhHHHHHHHhhhcccccCccchHHHHHHHHHHH
Confidence 567789999999999999999999999998874 333333333466899999999999999888755 46779999999
Q ss_pred hhChHhHHHHHHHHHHhh
Q 005282 615 QYLLEGLKRLCEYSIAQI 632 (704)
Q Consensus 615 ~~~~~~l~~~c~~~l~~~ 632 (704)
+|.+++|.+.|...+...
T Consensus 87 fYlL~~Lv~~C~~~i~~~ 104 (230)
T KOG2716|consen 87 FYLLDGLVELCQSAIARL 104 (230)
T ss_pred HhhHHHHHHHHHHHhhhc
Confidence 999999999999987553
No 109
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.95 E-value=0.0041 Score=63.87 Aligned_cols=214 Identities=32% Similarity=0.370 Sum_probs=144.2
Q ss_pred CChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHH
Q 005282 92 GAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRA 171 (704)
Q Consensus 92 g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a 171 (704)
..++.+++++.+.+. .++..|.+.++.+.. ..+++.+..++.+... .++..+
T Consensus 43 ~~~~~~~~~l~~~~~----------~vr~~aa~~l~~~~~----------~~av~~l~~~l~d~~~--------~vr~~a 94 (335)
T COG1413 43 EAADELLKLLEDEDL----------LVRLSAAVALGELGS----------EEAVPLLRELLSDEDP--------RVRDAA 94 (335)
T ss_pred hhHHHHHHHHcCCCH----------HHHHHHHHHHhhhch----------HHHHHHHHHHhcCCCH--------HHHHHH
Confidence 357889999999855 899999999777762 3467899999998776 899999
Q ss_pred HHHHHHhhhcChhhhhhhhccCCcHHHHHHhc-CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCH-
Q 005282 172 ADAITNLAHENANIKTRVRVEDGIPPLVELLK-FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDA- 249 (704)
Q Consensus 172 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~- 249 (704)
+.+|+.+-. + ..++.++.++. +.+..++..+.++|..+-. ...+..++..+.+...
T Consensus 95 ~~aLg~~~~--~---------~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~-----------~~a~~~l~~~l~~~~~~ 152 (335)
T COG1413 95 ADALGELGD--P---------EAVPPLVELLENDENEGVRAAAARALGKLGD-----------ERALDPLLEALQDEDSG 152 (335)
T ss_pred HHHHHccCC--h---------hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc-----------hhhhHHHHHHhccchhh
Confidence 998887752 2 34788999998 6999999999999999974 1236667777776553
Q ss_pred -----------HHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhc
Q 005282 250 -----------SVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQR 318 (704)
Q Consensus 250 -----------~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 318 (704)
.++..+...++.+- ....++.+...+.+....++..++.+|+.+.... .
T Consensus 153 ~a~~~~~~~~~~~r~~a~~~l~~~~-----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~ 212 (335)
T COG1413 153 SAAAALDAALLDVRAAAAEALGELG-----------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------V 212 (335)
T ss_pred hhhhhccchHHHHHHHHHHHHHHcC-----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------h
Confidence 23444444444332 1234566666777766677777777777765422 2
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHH
Q 005282 319 GAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALY 385 (704)
Q Consensus 319 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~ 385 (704)
.+.+.+...+.+++..++..++.+|+.+-... .+..++..+.+.+..++..+...+.
T Consensus 213 ~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~~----------~~~~l~~~l~~~~~~~~~~~~~~~~ 269 (335)
T COG1413 213 EAADLLVKALSDESLEVRKAALLALGEIGDEE----------AVDALAKALEDEDVILALLAAAALG 269 (335)
T ss_pred hHHHHHHHHhcCCCHHHHHHHHHHhcccCcch----------hHHHHHHHHhccchHHHHHHHHHhc
Confidence 34566666667777777777777666544332 3345566666666655555544444
No 110
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.94 E-value=0.0008 Score=76.60 Aligned_cols=327 Identities=15% Similarity=0.091 Sum_probs=187.1
Q ss_pred hHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhh
Q 005282 165 SGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLML 244 (704)
Q Consensus 165 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL 244 (704)
|.-+..|+..++.++... .-+..-.-...||.|.++=.++++.++.+...+=..|..+......... ..+++-|+.-+
T Consensus 971 wnSk~GaAfGf~~i~~~a-~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~-neIl~eLL~~l 1048 (1702)
T KOG0915|consen 971 WNSKKGAAFGFGAIAKQA-GEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYL-NEILDELLVNL 1048 (1702)
T ss_pred hhcccchhhchHHHHHHH-HHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHH-HHHHHHHHHhc
Confidence 566777888888887533 2222233345678888887789999987655554445543222222222 34677788888
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhhHHHHHH--cCCHHHHHHHhcCCChhHHH---HHHHHHHHHhccC--C--cchHHH
Q 005282 245 RSEDASVHFEAVGVIGNLVHSSPSIKKEVIL--AGALQPVIGLLSSSCSESKR---EAALLLGQFAAAD--S--NSKVHI 315 (704)
Q Consensus 245 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~ll~~~~~~~~~---~a~~~L~~l~~~~--~--~~~~~~ 315 (704)
.+....||+.+|.+|..|.++.+.-. +.+ ......+...+.+-...+|. .++.+|+.++... . .....-
T Consensus 1049 t~kewRVReasclAL~dLl~g~~~~~--~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~ 1126 (1702)
T KOG0915|consen 1049 TSKEWRVREASCLALADLLQGRPFDQ--VKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKE 1126 (1702)
T ss_pred cchhHHHHHHHHHHHHHHHcCCChHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHH
Confidence 88999999999999999998754321 111 12333344444443344544 3455666655221 1 111111
Q ss_pred HhcCChHHHHHh-hCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchh
Q 005282 316 VQRGAVRPLIEM-LQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNV 394 (704)
Q Consensus 316 ~~~~~i~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 394 (704)
.-..++|.|+.- .-+.-.++|..+..++..|+......-+-.-...++.|++....-.+.+......=+.+.. .+..
T Consensus 1127 ~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e--~eal 1204 (1702)
T KOG0915|consen 1127 ALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIE--TEAL 1204 (1702)
T ss_pred HHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhH--HHHH
Confidence 112234444331 1145578999999999999987665433333345566666666655555433322222221 1111
Q ss_pred hHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhcc-HHHHHHHHHHHHhccCCCccceeeec
Q 005282 395 ADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVAD-RAVKRRVTLALAHLCAPDDCKTIFID 473 (704)
Q Consensus 395 ~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~l~~ 473 (704)
......+ ....+..+.+-..+...+..+.+.++|.+..+++.+- -..+..++..+..|...-........
T Consensus 1205 Dt~R~s~---------aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~s 1275 (1702)
T KOG0915|consen 1205 DTLRASA---------AKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYS 1275 (1702)
T ss_pred HHHHHhh---------hcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcch
Confidence 1111111 1122344556666777777777888999999997753 34556667777666322111111122
Q ss_pred CCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282 474 NNGLELLLGLLESTSVKQREESSVALYKLATKA 506 (704)
Q Consensus 474 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 506 (704)
..-+..++..+.+.++.+++.-+.|...|..-+
T Consensus 1276 gKll~al~~g~~dRNesv~kafAsAmG~L~k~S 1308 (1702)
T KOG0915|consen 1276 GKLLRALFPGAKDRNESVRKAFASAMGYLAKFS 1308 (1702)
T ss_pred hHHHHHHhhccccccHHHHHHHHHHHHHHHhcC
Confidence 234667777778889999999999999888755
No 111
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.94 E-value=0.00029 Score=72.43 Aligned_cols=300 Identities=17% Similarity=0.122 Sum_probs=176.8
Q ss_pred CcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhh--hhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 005282 144 ALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANI--KTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLA 221 (704)
Q Consensus 144 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 221 (704)
.+..++.+|++... .++..|+...+.++.--..+ -..+...| ..|.+.+...++++.-..+.+++.+.
T Consensus 605 ivStiL~~L~~k~p--------~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~ 674 (975)
T COG5181 605 IVSTILKLLRSKPP--------DVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIY 674 (975)
T ss_pred HHHHHHHHhcCCCc--------cHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHh
Confidence 34556666766655 88999998888886311111 11122222 23667777889999998888888886
Q ss_pred cCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHH
Q 005282 222 FKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLL 301 (704)
Q Consensus 222 ~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L 301 (704)
.-..-..-+.--.|++|.|..+|++....+.......++.++...++....--.....--|+..|.+.+.+++++|...+
T Consensus 675 sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tf 754 (975)
T COG5181 675 SVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETF 754 (975)
T ss_pred hhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhh
Confidence 42221112222457899999999999999999999999999987776332111112233466777888899999999999
Q ss_pred HHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHH
Q 005282 302 GQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAA 381 (704)
Q Consensus 302 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~ 381 (704)
+.++.. +.-+.++..|+.-|+.++...+....-+++-.+..... -..++.|+.=-...+..||.-.+
T Consensus 755 G~Is~a-------iGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp------fsVlP~lm~dY~TPe~nVQnGvL 821 (975)
T COG5181 755 GCISRA-------IGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP------FSVLPTLMSDYETPEANVQNGVL 821 (975)
T ss_pred hhHHhh-------cCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc------hhhHHHHHhcccCchhHHHHhHH
Confidence 988642 22234556666666665555554444444333322100 01233333333445677888888
Q ss_pred HHHHHccc--CCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHH
Q 005282 382 FALYGLAD--NEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALA 459 (704)
Q Consensus 382 ~~L~~l~~--~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~ 459 (704)
.+++.+-. ....+.++ ..+.|.|-..+.+.|+..+.-|...+.
T Consensus 822 kam~fmFeyig~~s~dYv-----------------------------------y~itPlleDAltDrD~vhRqta~nvI~ 866 (975)
T COG5181 822 KAMCFMFEYIGQASLDYV-----------------------------------YSITPLLEDALTDRDPVHRQTAMNVIR 866 (975)
T ss_pred HHHHHHHHHHHHHHHHHH-----------------------------------HHhhHHHHhhhcccchHHHHHHHHHHH
Confidence 88777632 11111111 113444555667788888999999999
Q ss_pred hccCCCccceeeecCCcHHHHHHHHh----hcchhhhhhHHHHHHHHhh
Q 005282 460 HLCAPDDCKTIFIDNNGLELLLGLLE----STSVKQREESSVALYKLAT 504 (704)
Q Consensus 460 ~l~~~~~~~~~l~~~~~i~~L~~ll~----~~~~~~~~~a~~~L~~L~~ 504 (704)
+|+-+...- ...++.-+|+.++= ...|.++..--..+..++.
T Consensus 867 Hl~Lnc~gt---g~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~ 912 (975)
T COG5181 867 HLVLNCPGT---GDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFAT 912 (975)
T ss_pred HHhcCCCCc---ccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHH
Confidence 996542111 11223333444332 3556666555444444433
No 112
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.93 E-value=0.0014 Score=68.28 Aligned_cols=370 Identities=17% Similarity=0.111 Sum_probs=204.8
Q ss_pred ChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHH
Q 005282 93 AVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAA 172 (704)
Q Consensus 93 ~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~ 172 (704)
++..+++-+..+.. .+++....+|.-+....+.... .-..+.+.+++..... .-+..+.
T Consensus 97 ~~~~~~~~~~tps~----------~~q~~~~~~l~~~~~~~~~~~~---~~~l~~l~~ll~~~~~--------~~~~~aa 155 (569)
T KOG1242|consen 97 IIEILLEELDTPSK----------SVQRAVSTCLPPLVVLSKGLSG---EYVLELLLELLTSTKI--------AERAGAA 155 (569)
T ss_pred HHHHHHHhcCCCcH----------HHHHHHHHHhhhHHHHhhccCH---HHHHHHHHHHhccccH--------HHHhhhh
Confidence 46777777777765 8888888888777722221110 1134556666664433 6677888
Q ss_pred HHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHH-HHHHHHHhccCCchhhHHhHhcCChHHH---HHhhcCCC
Q 005282 173 DAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRA-AAGALRTLAFKNDENKKLIVECNALPTL---VLMLRSED 248 (704)
Q Consensus 173 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~-a~~~L~~l~~~~~~~~~~~~~~~~i~~L---~~lL~~~~ 248 (704)
+.++.+..+.. -..+.+.+++..+...+.+.....++. +.-+....+. +-. ...+..+++.+ +.-..+..
T Consensus 156 ~~~ag~v~g~~--i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~-~Lg---~~~EPyiv~~lp~il~~~~d~~ 229 (569)
T KOG1242|consen 156 YGLAGLVNGLG--IESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQG-NLG---PPFEPYIVPILPSILTNFGDKI 229 (569)
T ss_pred HHHHHHHcCcH--HhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHH-hcC---CCCCchHHhhHHHHHHHhhccc
Confidence 88888875433 445667788889998888765544443 3333333322 111 22344444444 44445677
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhh
Q 005282 249 ASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEML 328 (704)
Q Consensus 249 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll 328 (704)
..+|..+..+...+...-+... -.-+++.++.-+....++....++..++.++... ..+.......++|.+...|
T Consensus 230 ~~Vr~Aa~~a~kai~~~~~~~a----VK~llpsll~~l~~~kWrtK~aslellg~m~~~a-p~qLs~~lp~iiP~lsevl 304 (569)
T KOG1242|consen 230 NKVREAAVEAAKAIMRCLSAYA----VKLLLPSLLGSLLEAKWRTKMASLELLGAMADCA-PKQLSLCLPDLIPVLSEVL 304 (569)
T ss_pred hhhhHHHHHHHHHHHHhcCcch----hhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhc-hHHHHHHHhHhhHHHHHHH
Confidence 8888888877766653322111 1224555554444447888899999999887643 3344455578999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHccc----CCchhhH---HHhhC
Q 005282 329 QSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD----NEDNVAD---LVRVG 401 (704)
Q Consensus 329 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~----~~~~~~~---l~~~g 401 (704)
.+..+++++.+..+|.+++...++... ...++.|++.+.+.+-.+.+ +...|..-+- .+..... +++.|
T Consensus 305 ~DT~~evr~a~~~~l~~~~svidN~dI---~~~ip~Lld~l~dp~~~~~e-~~~~L~~ttFV~~V~~psLalmvpiL~R~ 380 (569)
T KOG1242|consen 305 WDTKPEVRKAGIETLLKFGSVIDNPDI---QKIIPTLLDALADPSCYTPE-CLDSLGATTFVAEVDAPSLALMVPILKRG 380 (569)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhccHHH---HHHHHHHHHHhcCcccchHH-HHHhhcceeeeeeecchhHHHHHHHHHHH
Confidence 999999999999999999876554431 12456666666654433322 2222221110 1111111 11111
Q ss_pred CcccccccccccccchHHHHHHHHHHH------HHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCccceeeecCC
Q 005282 402 GVQKLQDGEFTVQPTKDCVARTLKRLE------EKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNN 475 (704)
Q Consensus 402 ~i~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~ 475 (704)
.-++ .........-+.+.+..+. ..+.+.+++.+-..+.+..|++|.-++.+|+.+.+....... .+
T Consensus 381 l~eR----st~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f---~d 453 (569)
T KOG1242|consen 381 LAER----STSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF---DD 453 (569)
T ss_pred Hhhc----cchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc---cc
Confidence 1111 0000000000111111111 111223444444455556799999999999888543333322 45
Q ss_pred cHHHHHHHHhhcc-hhhhhhHHHHHHHHhhh
Q 005282 476 GLELLLGLLESTS-VKQREESSVALYKLATK 505 (704)
Q Consensus 476 ~i~~L~~ll~~~~-~~~~~~a~~~L~~L~~~ 505 (704)
.+|.+...+.+.. ...+.-++..|......
T Consensus 454 ~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~ 484 (569)
T KOG1242|consen 454 LIPELSETLTSEKSLVDRSGAAQDLSEVLAG 484 (569)
T ss_pred cccHHHHhhccchhhhhhHHHhhhHHHHHhc
Confidence 6777777776532 22344555555555443
No 113
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.91 E-value=0.00066 Score=71.54 Aligned_cols=276 Identities=18% Similarity=0.185 Sum_probs=172.2
Q ss_pred HHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcCCcHHHHH
Q 005282 72 SHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTGALPHLVS 150 (704)
Q Consensus 72 ~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~ 150 (704)
+.+|.-+++++.....+....++..|+.+-.-...........+..+..+|+++|+|+. .++..|+.+.+.|+.+.++.
T Consensus 2 L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~ 81 (446)
T PF10165_consen 2 LETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCE 81 (446)
T ss_pred HHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHH
Confidence 44556666777666777666667777666511110000011125699999999999999 99999999999999999999
Q ss_pred HHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhc-cCCcHHHHHHhc----------C-------CCHHHHHH
Q 005282 151 LLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRV-EDGIPPLVELLK----------F-------VDVKVQRA 212 (704)
Q Consensus 151 lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~----------~-------~~~~~~~~ 212 (704)
.|+........ +++.......|.-++......+..+++ .+++..+...+. . .+......
T Consensus 82 ~Lk~~~~~~~~---~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~E 158 (446)
T PF10165_consen 82 RLKNYSDSSQP---SDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSE 158 (446)
T ss_pred HHHcccccCCC---hhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHH
Confidence 99987443111 267777788777777666666655555 477777776654 0 13456778
Q ss_pred HHHHHHHhccCCchhhHHhHhcCChHHHHHhhc---------CCCHHHHHHHHHHHHHHhcCChhh-------HHH----
Q 005282 213 AAGALRTLAFKNDENKKLIVECNALPTLVLMLR---------SEDASVHFEAVGVIGNLVHSSPSI-------KKE---- 272 (704)
Q Consensus 213 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~---------~~~~~v~~~a~~~L~~l~~~~~~~-------~~~---- 272 (704)
++..+.|+....+.... -.....++.++.++. .+.......++.+|.|+--.+... ...
T Consensus 159 iLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~ 237 (446)
T PF10165_consen 159 ILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPE 237 (446)
T ss_pred HHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCC
Confidence 88899999765444333 111223344443322 123466777888888773111110 000
Q ss_pred HHHcCCHHHHHHHhcC----C----ChhHHHHHHHHHHHHhccCCcchHHHHh----------------cCChHHHHHhh
Q 005282 273 VILAGALQPVIGLLSS----S----CSESKREAALLLGQFAAADSNSKVHIVQ----------------RGAVRPLIEML 328 (704)
Q Consensus 273 ~~~~~~l~~L~~ll~~----~----~~~~~~~a~~~L~~l~~~~~~~~~~~~~----------------~~~i~~L~~ll 328 (704)
......+..|+.+|.. . -.+.....+.+|.+++..+...+..+.. ..+-..|++++
T Consensus 238 ~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLm 317 (446)
T PF10165_consen 238 GDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLM 317 (446)
T ss_pred CCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHh
Confidence 0112345566666631 1 1244566777788887765544444322 23557799999
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCc
Q 005282 329 QSPDSQLKEMSAFALGRLAQDTH 351 (704)
Q Consensus 329 ~~~~~~v~~~a~~~L~~l~~~~~ 351 (704)
.+..+.++..+...|..||..+.
T Consensus 318 t~~~~~~k~~vaellf~Lc~~d~ 340 (446)
T PF10165_consen 318 TSPDPQLKDAVAELLFVLCKEDA 340 (446)
T ss_pred CCCCchHHHHHHHHHHHHHhhhH
Confidence 99889999999999999986554
No 114
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.89 E-value=2.1e-05 Score=51.81 Aligned_cols=41 Identities=44% Similarity=0.615 Sum_probs=38.1
Q ss_pred CchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 005282 224 NDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVH 264 (704)
Q Consensus 224 ~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 264 (704)
+++++..+++.|+++.|+++|.++++.+++.|+|+|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46788999999999999999999999999999999999973
No 115
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=0.003 Score=66.44 Aligned_cols=260 Identities=15% Similarity=0.179 Sum_probs=162.3
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcH
Q 005282 117 EVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIP 196 (704)
Q Consensus 117 ~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 196 (704)
....-|+.+++|+.+. +++..+. +-+-++|.+.+.. +-++..++.+|..+...+|+. +-..+...
T Consensus 126 ~fv~LAL~~I~niG~r-e~~ea~~-----~DI~KlLvS~~~~------~~vkqkaALclL~L~r~spDl---~~~~~W~~ 190 (938)
T KOG1077|consen 126 TFVCLALHCIANIGSR-EMAEAFA-----DDIPKLLVSGSSM------DYVKQKAALCLLRLFRKSPDL---VNPGEWAQ 190 (938)
T ss_pred HHHHHHHHHHHhhccH-hHHHHhh-----hhhHHHHhCCcch------HHHHHHHHHHHHHHHhcCccc---cChhhHHH
Confidence 6777888888888732 3333333 2333667666552 378889999999998877653 33346688
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc-------------CCCHHHHHHHHHHHHHHh
Q 005282 197 PLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR-------------SEDASVHFEAVGVIGNLV 263 (704)
Q Consensus 197 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-------------~~~~~v~~~a~~~L~~l~ 263 (704)
.++.+|.+.+-.+..++...+..++..+++....-.-. .+..|..... -+.|..+...+++|.+.-
T Consensus 191 riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~-avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p 269 (938)
T KOG1077|consen 191 RIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPL-AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYP 269 (938)
T ss_pred HHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHH-HHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCC
Confidence 99999999988888889999998987666544322110 1222222211 245788888888888773
Q ss_pred cCC-hhhHHHHHHcCCHHHHHHHhcCC--ChhH-----HHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHH
Q 005282 264 HSS-PSIKKEVILAGALQPVIGLLSSS--CSES-----KREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQL 335 (704)
Q Consensus 264 ~~~-~~~~~~~~~~~~l~~L~~ll~~~--~~~~-----~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v 335 (704)
... +..+..+ ..+++.++...+.+ ...+ +...+.-.-+++.+.+.....+ ...+..|-.++.+.+..+
T Consensus 270 ~~~D~~~r~~l--~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll--~~~~~~Lg~fls~rE~Ni 345 (938)
T KOG1077|consen 270 TPEDPSTRARL--NEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELL--SRAVNQLGQFLSHRETNI 345 (938)
T ss_pred CCCCchHHHHH--HHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHH--HHHHHHHHHHhhcccccc
Confidence 221 1111111 12333333333321 1112 1222223334444443333333 345788889999999999
Q ss_pred HHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhc-CCChhHHHHHHHHHHHcccCCchhhHHHh
Q 005282 336 KEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLD-SKNGSLQHNAAFALYGLADNEDNVADLVR 399 (704)
Q Consensus 336 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~l~~ 399 (704)
|.-|+..++.|+........+... .+.++..|+ ..|.++++.|+..|..+|. .+|.+.|+.
T Consensus 346 RYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD-~~Nak~IV~ 407 (938)
T KOG1077|consen 346 RYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCD-VSNAKQIVA 407 (938)
T ss_pred hhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhc-hhhHHHHHH
Confidence 999999999999886655555443 667788887 7899999999999999864 444555544
No 116
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.86 E-value=6.2e-05 Score=76.01 Aligned_cols=197 Identities=15% Similarity=0.071 Sum_probs=147.5
Q ss_pred CchHHHHHHHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhcc
Q 005282 114 YEHEVEKECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVE 192 (704)
Q Consensus 114 ~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 192 (704)
+|..-...++-+|-.++ +-.-.|..+.+..+.+.|+++|++++- -+...+...++|+.-.-.+.++.+...
T Consensus 401 ~d~l~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Pei--------mi~~~~t~~icn~vv~fsnL~~~fL~~ 472 (743)
T COG5369 401 QDDLDFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEI--------MIEFPDTIDICNKVVPFSNLGAGFLEK 472 (743)
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccc--------eeeccchhhhhheeeeccchHHHHHHh
Confidence 34444555666666666 445567788888999999999998654 455567778888887778889999999
Q ss_pred CCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchh-hHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh---
Q 005282 193 DGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDEN-KKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPS--- 268 (704)
Q Consensus 193 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~--- 268 (704)
|++..|+.++.+.|..+|....|.++.+..+.+++ +-.+...-++..++.+.++++..|+..++..|.|+.-+...
T Consensus 473 ~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEk 552 (743)
T COG5369 473 SIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEK 552 (743)
T ss_pred hHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccc
Confidence 99999999999999999999999999998755544 44556677889999999999999999999999999854322
Q ss_pred hHHHHHHc----CCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhc
Q 005282 269 IKKEVILA----GALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQR 318 (704)
Q Consensus 269 ~~~~~~~~----~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 318 (704)
...-+.+. -....++..+...++-.....+..|.+++..+...+..+.+.
T Consensus 553 skdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q 606 (743)
T COG5369 553 SKDVFIKATPRRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQ 606 (743)
T ss_pred cceeEEecChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhH
Confidence 11111111 134566666777777777777888888887666655555443
No 117
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.00073 Score=72.05 Aligned_cols=242 Identities=15% Similarity=0.111 Sum_probs=149.2
Q ss_pred HHHHHHHHHHHhhcC-hhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCc
Q 005282 67 AAKTASHALVEFAKN-EEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGAL 145 (704)
Q Consensus 67 ~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l 145 (704)
.+.-.---+.+.+.. |... -+++..++.=..++++ .+|..|++.++.+-... ... -..
T Consensus 65 lKKlvyLYl~nYa~~~P~~a-----~~avnt~~kD~~d~np----------~iR~lAlrtm~~l~v~~-i~e-----y~~ 123 (734)
T KOG1061|consen 65 LKKLVYLYLMNYAKGKPDLA-----ILAVNTFLKDCEDPNP----------LIRALALRTMGCLRVDK-ITE-----YLC 123 (734)
T ss_pred HHHHHHHHHHHhhccCchHH-----HhhhhhhhccCCCCCH----------HHHHHHhhceeeEeehH-HHH-----HHH
Confidence 333334445555553 4432 2346666666666654 89988888887776321 111 134
Q ss_pred HHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCc
Q 005282 146 PHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKND 225 (704)
Q Consensus 146 ~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 225 (704)
.++...+++... .++..++.+..++-..++ ......|.++.|..++.++++.+..+|+.+|..+....+
T Consensus 124 ~Pl~~~l~d~~~--------yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 124 DPLLKCLKDDDP--------YVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHP 192 (734)
T ss_pred HHHHHhccCCCh--------hHHHHHHHHHHHhhcCCh---hhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCC
Confidence 577777777665 888888888888875443 447788999999999999999999999999999986444
Q ss_pred hhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHh
Q 005282 226 ENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFA 305 (704)
Q Consensus 226 ~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~ 305 (704)
..-........+..++..+...+..-+...+.++.+-...++.- ....+..+...+.+.+..+...+..++.++.
T Consensus 193 ~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~e-----a~~i~~r~~p~Lqh~n~avvlsavKv~l~~~ 267 (734)
T KOG1061|consen 193 SVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSRE-----AEDICERLTPRLQHANSAVVLSAVKVILQLV 267 (734)
T ss_pred CCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchh-----HHHHHHHhhhhhccCCcceEeehHHHHHHHH
Confidence 31111122223444555555555555555555555544332211 1234566777777888888777777777776
Q ss_pred ccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 005282 306 AADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLA 347 (704)
Q Consensus 306 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 347 (704)
...+. .....-..+-++|+.++...+ +++..+..-+.-+.
T Consensus 268 ~~~~~-~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil 307 (734)
T KOG1061|consen 268 KYLKQ-VNELLFKKVAPPLVTLLSSES-EIQYVALRNINLIL 307 (734)
T ss_pred HHHHH-HHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHH
Confidence 53333 333344566777888777766 66655555444443
No 118
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.82 E-value=0.0039 Score=63.97 Aligned_cols=258 Identities=33% Similarity=0.394 Sum_probs=179.2
Q ss_pred HHHHHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHh
Q 005282 49 AQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGL 128 (704)
Q Consensus 49 ~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~ 128 (704)
..++.+...+.+. +..++..+.+.+..+.. .-.++.+..++.+.+. .+|..|+.+|+.
T Consensus 43 ~~~~~~~~~l~~~--~~~vr~~aa~~l~~~~~----------~~av~~l~~~l~d~~~----------~vr~~a~~aLg~ 100 (335)
T COG1413 43 EAADELLKLLEDE--DLLVRLSAAVALGELGS----------EEAVPLLRELLSDEDP----------RVRDAAADALGE 100 (335)
T ss_pred hhHHHHHHHHcCC--CHHHHHHHHHHHhhhch----------HHHHHHHHHHhcCCCH----------HHHHHHHHHHHc
Confidence 3444455555443 45567777777554432 2347999999999875 899999998888
Q ss_pred hcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCH-
Q 005282 129 LAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDV- 207 (704)
Q Consensus 129 l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~- 207 (704)
+-. ...++.++.++..+.+ ..++..+.++|+.+-.. ..+..++..+.+...
T Consensus 101 ~~~----------~~a~~~li~~l~~d~~-------~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~~~~~~ 152 (335)
T COG1413 101 LGD----------PEAVPPLVELLENDEN-------EGVRAAAARALGKLGDE-----------RALDPLLEALQDEDSG 152 (335)
T ss_pred cCC----------hhHHHHHHHHHHcCCc-------HhHHHHHHHHHHhcCch-----------hhhHHHHHHhccchhh
Confidence 773 2457899999986222 38999999999998642 226677777776552
Q ss_pred -----------HHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHc
Q 005282 208 -----------KVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILA 276 (704)
Q Consensus 208 -----------~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 276 (704)
.++..+...+..+- +...++.+...+.+.+..++..+..+|+.+...+ .
T Consensus 153 ~a~~~~~~~~~~~r~~a~~~l~~~~-----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~ 212 (335)
T COG1413 153 SAAAALDAALLDVRAAAAEALGELG-----------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------V 212 (335)
T ss_pred hhhhhccchHHHHHHHHHHHHHHcC-----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------h
Confidence 34555555555554 2345788899999999999999999999998653 3
Q ss_pred CCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhH
Q 005282 277 GALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGI 356 (704)
Q Consensus 277 ~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 356 (704)
...+.+...+.+.+..++..++.+|+.+-. ......+...+.+.+..++..+...+.. .
T Consensus 213 ~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~-----------~~~~~~l~~~l~~~~~~~~~~~~~~~~~----------~ 271 (335)
T COG1413 213 EAADLLVKALSDESLEVRKAALLALGEIGD-----------EEAVDALAKALEDEDVILALLAAAALGA----------L 271 (335)
T ss_pred hHHHHHHHHhcCCCHHHHHHHHHHhcccCc-----------chhHHHHHHHHhccchHHHHHHHHHhcc----------c
Confidence 345778888999999999999999887632 2357888888888887777666665551 0
Q ss_pred HhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHH
Q 005282 357 AQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADL 397 (704)
Q Consensus 357 ~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l 397 (704)
........+...+.+.+..++..+...+............+
T Consensus 272 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~ 312 (335)
T COG1413 272 DLAEAALPLLLLLIDEANAVRLEAALALGQIGQEKAVAALL 312 (335)
T ss_pred CchhhHHHHHHHhhcchhhHHHHHHHHHHhhcccchHHHHH
Confidence 11123345666667777788888888887776544433333
No 119
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.78 E-value=3.4e-05 Score=50.87 Aligned_cols=40 Identities=45% Similarity=0.698 Sum_probs=36.4
Q ss_pred ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc
Q 005282 81 NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA 130 (704)
Q Consensus 81 ~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~ 130 (704)
++++++.+++.|++|.|+++|++.+. +++..|+|+|+||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~----------~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDP----------EVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSH----------HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCH----------HHHHHHHHHHHHHh
Confidence 46788999999999999999997755 99999999999987
No 120
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.74 E-value=0.00012 Score=58.33 Aligned_cols=68 Identities=26% Similarity=0.287 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc--CCCHHHHHHHHHHHHHhccCCchhhHHhHhc
Q 005282 167 VIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLK--FVDVKVQRAAAGALRTLAFKNDENKKLIVEC 234 (704)
Q Consensus 167 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 234 (704)
++...+..++|+|..++..+..+.+.|++|.++.... ..+|.++++|++++++|+.+++++++.+.+.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 3567889999999999999999999999999999877 5689999999999999999999999987654
No 121
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=0.00024 Score=73.81 Aligned_cols=269 Identities=14% Similarity=0.123 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHhhcCCh--hhHHHHHHc------C------CcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcC
Q 005282 117 EVEKECAFALGLLAVKP--EHQQIIVDT------G------ALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHEN 182 (704)
Q Consensus 117 ~v~~~a~~~L~~l~~~~--~~~~~~~~~------g------~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~ 182 (704)
.-+..++..|.+++++. ..|...++. | .....+.++++... +++..|+..++-...-.
T Consensus 194 ~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~Y~~A~~~lsD~~e--------~VR~aAvqlv~v~gn~~ 265 (823)
T KOG2259|consen 194 HDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKACYSRAVKHLSDDYE--------DVRKAAVQLVSVWGNRC 265 (823)
T ss_pred ccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccccccHHHHHHHHHHhcchHH--------HHHHHHHHHHHHHHhcC
Confidence 34555666677777333 333322211 1 24556666766655 88888865554443211
Q ss_pred -----hhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc-CCCHHHHHHHH
Q 005282 183 -----ANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR-SEDASVHFEAV 256 (704)
Q Consensus 183 -----~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~ 256 (704)
.+..+.-....++..+...+++.+..+|..|..+|+.+-.-+.+...+..+..++..+-+--. +..+.-.....
T Consensus 266 p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~G 345 (823)
T KOG2259|consen 266 PAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSG 345 (823)
T ss_pred CCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcC
Confidence 111112222345667778888888888888888888876533343333333222221111000 11111100000
Q ss_pred -HHHHHHh------cCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhC
Q 005282 257 -GVIGNLV------HSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQ 329 (704)
Q Consensus 257 -~~L~~l~------~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~ 329 (704)
|.=+.=. +..++....++..|+...++.-+.+.--+++..|+..+..++...+.... ..+..|+.++.
T Consensus 346 ewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfN 420 (823)
T KOG2259|consen 346 EWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFN 420 (823)
T ss_pred CcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhc
Confidence 0000000 01123344567788888999989888889999999999999987776544 35889999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHHHhhCCc
Q 005282 330 SPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGV 403 (704)
Q Consensus 330 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i 403 (704)
++...+|..|..+|..++.+-. ++...++.++..|.+.+.++|++.-..|.+.--..-.+-.++-.+.+
T Consensus 421 DE~~~VRL~ai~aL~~Is~~l~-----i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m~v~~lL 489 (823)
T KOG2259|consen 421 DEIEVVRLKAIFALTMISVHLA-----IREEQLRQILESLEDRSVDVREALRELLKNARVSDLECIDMCVAHLL 489 (823)
T ss_pred cHHHHHHHHHHHHHHHHHHHhe-----ecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 9999999999999999987733 33345677889999999999999888888775444333333333333
No 122
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.72 E-value=0.00018 Score=74.74 Aligned_cols=258 Identities=17% Similarity=0.163 Sum_probs=161.8
Q ss_pred hHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CC--hh---hHHHHHHcCCcHHHHHHHhhccCCCCCcchhHH
Q 005282 94 VPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VK--PE---HQQIIVDTGALPHLVSLLKQYKNGGNSRALSGV 167 (704)
Q Consensus 94 i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~--~~---~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~ 167 (704)
....++++.+... +||..|++++.-.+ .. |. .-+.=..-.++..++..+++-.- .+
T Consensus 236 Y~~A~~~lsD~~e----------~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl--------~V 297 (823)
T KOG2259|consen 236 YSRAVKHLSDDYE----------DVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSL--------SV 297 (823)
T ss_pred HHHHHHHhcchHH----------HHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCce--------ee
Confidence 5667888888865 89988866665554 22 11 11111223467788888887664 78
Q ss_pred HHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc-CCCHHHHHHHHHHHHHh--cc-----------CCchhhHHhHh
Q 005282 168 IRRAADAITNLAHENANIKTRVRVEDGIPPLVELLK-FVDVKVQRAAAGALRTL--AF-----------KNDENKKLIVE 233 (704)
Q Consensus 168 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l--~~-----------~~~~~~~~~~~ 233 (704)
+..|+.+|+.+-.-+++.-.+.....++..+-+.-. +.-+ -....+. +. ..++....++.
T Consensus 298 RV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrp------k~l~s~GewSsGk~~~advpsee~d~~~~siI~ 371 (823)
T KOG2259|consen 298 RVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRP------KALYSSGEWSSGKEWNADVPSEEDDEEEESIIP 371 (823)
T ss_pred eehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccch------HHHHhcCCcccCccccccCchhhcccccccccc
Confidence 888998888887555554333333332221111000 0111 1111111 00 01223345677
Q ss_pred cCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchH
Q 005282 234 CNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKV 313 (704)
Q Consensus 234 ~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 313 (704)
.|....++.-|.++-.+||..|+..++.|+.+.|.... ..+..|+.++++....++..|+.+|..++.+
T Consensus 372 sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~------ 440 (823)
T KOG2259|consen 372 SGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDEIEVVRLKAIFALTMISVH------ 440 (823)
T ss_pred ccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccHHHHHHHHHHHHHHHHHHH------
Confidence 88889999999988899999999999999988776543 3578899999999999999999999998753
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCC
Q 005282 314 HIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNE 391 (704)
Q Consensus 314 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 391 (704)
..++..-++.+...|.+.+.++|+.+-..|.+.-....+...+. +..+++.|. .-|.-+.....++..+.++.
T Consensus 441 l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m~----v~~lL~~L~-kyPqDrd~i~~cm~~iGqnH 513 (823)
T KOG2259|consen 441 LAIREEQLRQILESLEDRSVDVREALRELLKNARVSDLECIDMC----VAHLLKNLG-KYPQDRDEILRCMGRIGQNH 513 (823)
T ss_pred heecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHH----HHHHHHHhh-hCCCCcHHHHHHHHHHhccC
Confidence 23444567888899999999999988888777554444333332 222333331 12233444556677776533
No 123
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.69 E-value=0.0028 Score=66.86 Aligned_cols=274 Identities=20% Similarity=0.174 Sum_probs=176.4
Q ss_pred HHHHhhhcChhhhhhhhccCCcHHHHHHh----------cCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHh
Q 005282 174 AITNLAHENANIKTRVRVEDGIPPLVELL----------KFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLM 243 (704)
Q Consensus 174 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll----------~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 243 (704)
+|.-++. ++.....+....++..|.++. ...++.+...|+.||+|+...++..|+.+.+.|+.+.++..
T Consensus 4 ~LRiLsR-d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~ 82 (446)
T PF10165_consen 4 TLRILSR-DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCER 82 (446)
T ss_pred HHHHHcc-CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHH
Confidence 4444443 233344455555555565555 25678999999999999999999999999999999999999
Q ss_pred hcCC-----CHHHHHHHHHHHHHHhcCChhhHHHHHH-cCCHHHHHHHhcC-----------------CChhHHHHHHHH
Q 005282 244 LRSE-----DASVHFEAVGVIGNLVHSSPSIKKEVIL-AGALQPVIGLLSS-----------------SCSESKREAALL 300 (704)
Q Consensus 244 L~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~-----------------~~~~~~~~a~~~ 300 (704)
|+.. +.++.....++|.-++...+..+..+++ .+++..+...+.. .+.....+++.+
T Consensus 83 Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKl 162 (446)
T PF10165_consen 83 LKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKL 162 (446)
T ss_pred HHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHH
Confidence 9865 7888889999998888777777766665 4777777765531 122346678888
Q ss_pred HHHHhccCCcchHHHHhcCChHHHHHhhC-------C--CCHHHHHHHHHHHHHhhcCCch--------hh----hHHhh
Q 005282 301 LGQFAAADSNSKVHIVQRGAVRPLIEMLQ-------S--PDSQLKEMSAFALGRLAQDTHN--------QA----GIAQD 359 (704)
Q Consensus 301 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-------~--~~~~v~~~a~~~L~~l~~~~~~--------~~----~~~~~ 359 (704)
+.|+....+.... -...+.++.++.++. . +-.....++..+|.|+-..... .. .....
T Consensus 163 lFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~ 241 (446)
T PF10165_consen 163 LFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNM 241 (446)
T ss_pred HHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCCh
Confidence 8998766554432 011233444433322 1 2245677788888877311100 00 01122
Q ss_pred CChHHHHHhhcC-----CC---hhHHHHHHHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHh
Q 005282 360 GGILPLLKLLDS-----KN---GSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKV 431 (704)
Q Consensus 360 ~~~~~L~~ll~~-----~~---~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (704)
..+..|+++|+. .+ .+...-.+.+|..++...+..+..++..+++...+.....+.
T Consensus 242 ~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~---------------- 305 (446)
T PF10165_consen 242 DVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEK---------------- 305 (446)
T ss_pred HHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCC----------------
Confidence 335556666532 11 234455566778888776777888888888887543222221
Q ss_pred hcchhHHHHHHHhhccHHHHHHHHHHHHhccCCC
Q 005282 432 HGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPD 465 (704)
Q Consensus 432 ~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 465 (704)
...+-..|+.++.+..+.++..++..|..||...
T Consensus 306 ~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 306 GDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKED 339 (446)
T ss_pred CcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhh
Confidence 1234557889998888999999999999997543
No 124
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.68 E-value=0.0029 Score=60.14 Aligned_cols=227 Identities=17% Similarity=0.144 Sum_probs=155.5
Q ss_pred hHHHHHHHHHHHHHhhcChhHHHHHHhC-CChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHc
Q 005282 64 DRAAAKTASHALVEFAKNEEIVSLIVDN-GAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDT 142 (704)
Q Consensus 64 ~~~~~~~a~~~L~~l~~~~~~~~~l~~~-g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~ 142 (704)
++..+.-|..++.++.-.++.|+.+... .+-..++++++..-. +.+++....-++..++-++.+.+.+-+.
T Consensus 162 ~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg--------~~qlQY~SL~~iw~lTf~~~~aqdi~K~ 233 (432)
T COG5231 162 DFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVG--------VKQLQYNSLIIIWILTFSKECAQDIDKM 233 (432)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhh--------hhhhHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 3446677788888888888888887643 455667788877654 5589999999999999888888555443
Q ss_pred -CCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChh-hhhhhhccCCcHHHHHHhcC---CCHHHHHHHHHHH
Q 005282 143 -GALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENAN-IKTRVRVEDGIPPLVELLKF---VDVKVQRAAAGAL 217 (704)
Q Consensus 143 -g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~ll~~---~~~~~~~~a~~~L 217 (704)
+.+.-++++.+.... ..+.+-|+.++.|++...|. .-......|-+.+-++.|.. .|.+++...-..=
T Consensus 234 ~dli~dli~iVk~~~k-------eKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~ 306 (432)
T COG5231 234 DDLINDLIAIVKERAK-------EKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIR 306 (432)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 456777777776554 37889999999999964432 11223333444555555542 3444332211111
Q ss_pred HHh-------cc--------------CCc---------hhhHHhHhc--CChHHHHHhhcCCCHH-HHHHHHHHHHHHhc
Q 005282 218 RTL-------AF--------------KND---------ENKKLIVEC--NALPTLVLMLRSEDAS-VHFEAVGVIGNLVH 264 (704)
Q Consensus 218 ~~l-------~~--------------~~~---------~~~~~~~~~--~~i~~L~~lL~~~~~~-v~~~a~~~L~~l~~ 264 (704)
..+ +. -+| .+...+.+. .++..|.+++++.++. ....||.-+..+.+
T Consensus 307 s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr 386 (432)
T COG5231 307 SRLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVR 386 (432)
T ss_pred HHHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHH
Confidence 111 10 011 233444433 3578888889877766 55678888888888
Q ss_pred CChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHh
Q 005282 265 SSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFA 305 (704)
Q Consensus 265 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~ 305 (704)
..|+...-+...|+=..++.++++++++++-+|+.++..+.
T Consensus 387 ~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 387 ASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred hCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 88999988889999999999999999999999999987664
No 125
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.68 E-value=0.015 Score=59.85 Aligned_cols=350 Identities=15% Similarity=0.114 Sum_probs=186.7
Q ss_pred hhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHH
Q 005282 63 TDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVD 141 (704)
Q Consensus 63 ~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~ 141 (704)
.+...+.+|+..|..+-++... +...+++.+..+.+-. +.-....-.++...+. .+++.+.++.
T Consensus 202 ~~~isqYHalGlLyq~kr~dkm--------a~lklv~hf~~n~smk------nq~a~V~lvr~~~~ll~~n~q~~~q~r- 266 (898)
T COG5240 202 GNPISQYHALGLLYQSKRTDKM--------AQLKLVEHFRGNASMK------NQLAGVLLVRATVELLKENSQALLQLR- 266 (898)
T ss_pred CChHHHHHHHHHHHHHhcccHH--------HHHHHHHHhhcccccc------cchhheehHHHHHHHHHhChHHHHHHH-
Confidence 3444566666666665543221 2345555555544200 0012223344555555 5666655544
Q ss_pred cCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 005282 142 TGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLA 221 (704)
Q Consensus 142 ~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 221 (704)
|.|-..+++..+ -+...++.++..++..+- ...+. ...+..|-.+|.+.....|..|+++|..|+
T Consensus 267 ----pfL~~wls~k~e--------mV~lE~Ar~v~~~~~~nv--~~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~la 331 (898)
T COG5240 267 ----PFLNSWLSDKFE--------MVFLEAARAVCALSEENV--GSQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLA 331 (898)
T ss_pred ----HHHHHHhcCcch--------hhhHHHHHHHHHHHHhcc--CHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 555555555433 566777777777775441 11111 234667777888888999999999999999
Q ss_pred cCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHH
Q 005282 222 FKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLL 301 (704)
Q Consensus 222 ~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L 301 (704)
+..|+... .+ =+.+-.++.+.+..+-..|..+|..- ++++....++ ..+..++.+-+..-+..++.++
T Consensus 332 m~~P~kv~-vc----N~evEsLIsd~Nr~IstyAITtLLKT--Gt~e~idrLv-----~~I~sfvhD~SD~FKiI~ida~ 399 (898)
T COG5240 332 MKYPQKVS-VC----NKEVESLISDENRTISTYAITTLLKT--GTEETIDRLV-----NLIPSFVHDMSDGFKIIAIDAL 399 (898)
T ss_pred hhCCceee-ec----ChhHHHHhhcccccchHHHHHHHHHc--CchhhHHHHH-----HHHHHHHHhhccCceEEeHHHH
Confidence 75443211 11 12344455666666655555555433 2333333222 2222333333333333444455
Q ss_pred HHHhccCCcchHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCC-chhhhHHhhCChHHHHHhhcCC-ChhHHH
Q 005282 302 GQFAAADSNSKVHIVQRGAVRPLIEMLQ-SPDSQLKEMSAFALGRLAQDT-HNQAGIAQDGGILPLLKLLDSK-NGSLQH 378 (704)
Q Consensus 302 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~ll~~~-~~~v~~ 378 (704)
..++-..+..+.. .+..|...|. .+..+.+..+..++..+.... +.+... +..|+..+.+. -+++..
T Consensus 400 rsLsl~Fp~k~~s-----~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEra-----Le~LC~fIEDcey~~I~v 469 (898)
T COG5240 400 RSLSLLFPSKKLS-----YLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERA-----LEVLCTFIEDCEYHQITV 469 (898)
T ss_pred HHHHhhCcHHHHH-----HHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHH-----HHHHHHHHhhcchhHHHH
Confidence 5554334433332 3555666554 466788888888888777654 333332 34566665432 233333
Q ss_pred HHHHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHH
Q 005282 379 NAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLAL 458 (704)
Q Consensus 379 ~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L 458 (704)
..+.+|+.=.-...+ .+..+.++.+-+--++.-++.+|..+|
T Consensus 470 rIL~iLG~EgP~a~~--------------------------------------P~~yvrhIyNR~iLEN~ivRsaAv~aL 511 (898)
T COG5240 470 RILGILGREGPRAKT--------------------------------------PGKYVRHIYNRLILENNIVRSAAVQAL 511 (898)
T ss_pred HHHHHhcccCCCCCC--------------------------------------cchHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 333333222100000 011222333334446778899999999
Q ss_pred HhccCCCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhh
Q 005282 459 AHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLAT 504 (704)
Q Consensus 459 ~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~ 504 (704)
..++.+...... -......|.+.+.+.+.++|..|+.+|.+|-.
T Consensus 512 skf~ln~~d~~~--~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~ 555 (898)
T COG5240 512 SKFALNISDVVS--PQSVENALKRCLNDQDDEVRDRASFLLRNMRL 555 (898)
T ss_pred HHhccCcccccc--HHHHHHHHHHHhhcccHHHHHHHHHHHHhhhh
Confidence 888655443332 23345567788888999999999999988753
No 126
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.65 E-value=0.00019 Score=57.06 Aligned_cols=86 Identities=34% Similarity=0.418 Sum_probs=69.2
Q ss_pred cHHHHHHh-cCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 005282 195 IPPLVELL-KFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEV 273 (704)
Q Consensus 195 i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 273 (704)
++.|++.+ +++++.++..++.+|+.+.. ...++.|..+++++++.++..|+++|+.+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD-----------PEAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH-----------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 57889988 78999999999999995542 135899999999999999999999999873
Q ss_pred HHcCCHHHHHHHhcCCCh-hHHHHHHHHHH
Q 005282 274 ILAGALQPVIGLLSSSCS-ESKREAALLLG 302 (704)
Q Consensus 274 ~~~~~l~~L~~ll~~~~~-~~~~~a~~~L~ 302 (704)
....++.|..++.+++. .++..|+.+|+
T Consensus 60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 23478899998877654 45888888774
No 127
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.64 E-value=0.00056 Score=65.81 Aligned_cols=184 Identities=19% Similarity=0.171 Sum_probs=116.1
Q ss_pred cCCChhHHHHHHHHHHHHhccC--CcchHHHHhc--CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCCh
Q 005282 287 SSSCSESKREAALLLGQFAAAD--SNSKVHIVQR--GAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGI 362 (704)
Q Consensus 287 ~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~--~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 362 (704)
.+.+++.+..++.-|..++.++ ......+... .++..+...+.+....+...|+.++..++......-.-.-...+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 5678999999999999998766 2333333221 56677888888777889999999999999765544443445677
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHH
Q 005282 363 LPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYL 442 (704)
Q Consensus 363 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l 442 (704)
+.|++.+.+++..++..|..+|..+...-.....+ ..+.+...
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-------------------------------------~~~~l~~~ 139 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-------------------------------------LLEILSQG 139 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-------------------------------------HHHHHHHH
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-------------------------------------HHHHHHHH
Confidence 88999999989999999999999997643311111 12345556
Q ss_pred HhhccHHHHHHHHHHHHhccCCCc-cceeeecC----CcHHHHHHHHhhcchhhhhhHHHHHHHHhhhcC
Q 005282 443 LRVADRAVKRRVTLALAHLCAPDD-CKTIFIDN----NGLELLLGLLESTSVKQREESSVALYKLATKAT 507 (704)
Q Consensus 443 l~~~~~~v~~~a~~~L~~l~~~~~-~~~~l~~~----~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~ 507 (704)
..+.++.++..++..+..+..... ....+... ..++.+..++.++++++|..|..++..+.+..+
T Consensus 140 ~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 140 LKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp TT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred HhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 678899999999999988854332 22222222 356677788889999999999999999877654
No 128
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.60 E-value=0.0092 Score=62.94 Aligned_cols=156 Identities=21% Similarity=0.263 Sum_probs=108.4
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhc-CCChhHHHHHHHHHHHHhccCCcchHHH
Q 005282 237 LPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLS-SSCSESKREAALLLGQFAAADSNSKVHI 315 (704)
Q Consensus 237 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 315 (704)
+..|-++|.+....+|..++..++.++.. .....++... .+.++..|+ ..+.++++.|+..|..+| +.++...+
T Consensus 331 ~~~Lg~fls~rE~NiRYLaLEsm~~L~ss-~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mc--D~~Nak~I 405 (938)
T KOG1077|consen 331 VNQLGQFLSHRETNIRYLALESMCKLASS-EFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMC--DVSNAKQI 405 (938)
T ss_pred HHHHHHHhhcccccchhhhHHHHHHHHhc-cchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHh--chhhHHHH
Confidence 55666777777888888888888888865 3333333333 677788887 778899999999999998 44555443
Q ss_pred HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCc-hh--------------hhHHhhCChHHHHHhhcCCChhHHHHH
Q 005282 316 VQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTH-NQ--------------AGIAQDGGILPLLKLLDSKNGSLQHNA 380 (704)
Q Consensus 316 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~--------------~~~~~~~~~~~L~~ll~~~~~~v~~~a 380 (704)
+.-|+..+.+.+..+|+....=++-|+..-. .- ...+.++....+++.. -.+++++..|
T Consensus 406 -----V~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~RvvQiV-vNnedlq~ya 479 (938)
T KOG1077|consen 406 -----VAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQIV-VNNEDLQGYA 479 (938)
T ss_pred -----HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhheeE-ecchhhhHHH
Confidence 6678888888888898887777777764311 10 0112223333344333 2478899999
Q ss_pred HHHHHHcccCCchhhHHHhhCCc
Q 005282 381 AFALYGLADNEDNVADLVRVGGV 403 (704)
Q Consensus 381 ~~~L~~l~~~~~~~~~l~~~g~i 403 (704)
+..+...-+.+...+.+++.||.
T Consensus 480 ak~~fe~Lq~~a~hE~mVKvggy 502 (938)
T KOG1077|consen 480 AKRLFEYLQKPACHENMVKVGGY 502 (938)
T ss_pred HHHHHHHHhhhHHHHHHHHhhhh
Confidence 99998888888888888887763
No 129
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.59 E-value=0.06 Score=55.69 Aligned_cols=324 Identities=19% Similarity=0.144 Sum_probs=188.3
Q ss_pred HHHHHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-C--ChhhHHHHHHcCC
Q 005282 69 KTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-V--KPEHQQIIVDTGA 144 (704)
Q Consensus 69 ~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~--~~~~~~~~~~~g~ 144 (704)
..-.++...+.. ++.....+ .|.|-..|++... -|..++++++..++ . .++..+. .
T Consensus 245 V~lvr~~~~ll~~n~q~~~q~-----rpfL~~wls~k~e----------mV~lE~Ar~v~~~~~~nv~~~~~~~-----~ 304 (898)
T COG5240 245 VLLVRATVELLKENSQALLQL-----RPFLNSWLSDKFE----------MVFLEAARAVCALSEENVGSQFVDQ-----T 304 (898)
T ss_pred eehHHHHHHHHHhChHHHHHH-----HHHHHHHhcCcch----------hhhHHHHHHHHHHHHhccCHHHHHH-----H
Confidence 333444444433 45555544 6777777777654 79999999999988 3 3333332 4
Q ss_pred cHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC
Q 005282 145 LPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKN 224 (704)
Q Consensus 145 l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 224 (704)
++.|-.+|+++.. ..+..|+.+|..++...|..- .-+=+-+-.++.+.+..+-..|+..|..-. .
T Consensus 305 vs~L~~fL~s~rv--------~~rFsA~Riln~lam~~P~kv-----~vcN~evEsLIsd~Nr~IstyAITtLLKTG--t 369 (898)
T COG5240 305 VSSLRTFLKSTRV--------VLRFSAMRILNQLAMKYPQKV-----SVCNKEVESLISDENRTISTYAITTLLKTG--T 369 (898)
T ss_pred HHHHHHHHhcchH--------HHHHHHHHHHHHHHhhCCcee-----eecChhHHHHhhcccccchHHHHHHHHHcC--c
Confidence 5677788888776 889999999999997665421 112234556667777777777777666543 5
Q ss_pred chhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHh-cCCChhHHHHHHHHHHH
Q 005282 225 DENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLL-SSSCSESKREAALLLGQ 303 (704)
Q Consensus 225 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~~~~~a~~~L~~ 303 (704)
++....++. .+..++++-++..+.-+..++..|+-..|..... .+..|...| +.+.-+-+..++.++..
T Consensus 370 ~e~idrLv~-----~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s-----~l~FL~~~L~~eGg~eFK~~~Vdaisd 439 (898)
T COG5240 370 EETIDRLVN-----LIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLS-----YLDFLGSSLLQEGGLEFKKYMVDAISD 439 (898)
T ss_pred hhhHHHHHH-----HHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHH-----HHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 555555543 3444444444444444455555554333433222 234444444 34556677888888888
Q ss_pred HhccCCcchHHHHhcCChHHHHHhhCCC-CHHHHHHHHHHHHHhhcCCc-hhhhHHhhCChHHHHHhhcCCChhHHHHHH
Q 005282 304 FAAADSNSKVHIVQRGAVRPLIEMLQSP-DSQLKEMSAFALGRLAQDTH-NQAGIAQDGGILPLLKLLDSKNGSLQHNAA 381 (704)
Q Consensus 304 l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~ 381 (704)
+....++.+.. +++.|+.++.+. -+++ +...|+-|....+ .... ...+..+..-+--.+.-+|..|+
T Consensus 440 ~~~~~p~skEr-----aLe~LC~fIEDcey~~I---~vrIL~iLG~EgP~a~~P---~~yvrhIyNR~iLEN~ivRsaAv 508 (898)
T COG5240 440 AMENDPDSKER-----ALEVLCTFIEDCEYHQI---TVRILGILGREGPRAKTP---GKYVRHIYNRLILENNIVRSAAV 508 (898)
T ss_pred HHhhCchHHHH-----HHHHHHHHHhhcchhHH---HHHHHHHhcccCCCCCCc---chHHHHHHHHHHHhhhHHHHHHH
Confidence 87766665543 467777777653 3333 4555555553211 1100 01123333333334667889999
Q ss_pred HHHHHcccCCchh--hHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHH
Q 005282 382 FALYGLADNEDNV--ADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALA 459 (704)
Q Consensus 382 ~~L~~l~~~~~~~--~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~ 459 (704)
.+|..++-+.+.. .+= +...|-..+.+.+++++..|..+|.
T Consensus 509 ~aLskf~ln~~d~~~~~s-------------------------------------v~~~lkRclnD~DdeVRdrAsf~l~ 551 (898)
T COG5240 509 QALSKFALNISDVVSPQS-------------------------------------VENALKRCLNDQDDEVRDRASFLLR 551 (898)
T ss_pred HHHHHhccCccccccHHH-------------------------------------HHHHHHHHhhcccHHHHHHHHHHHH
Confidence 9998886533221 110 1223555678889999999999999
Q ss_pred hccCCCccceee--ecCCcHHHHHHHHh
Q 005282 460 HLCAPDDCKTIF--IDNNGLELLLGLLE 485 (704)
Q Consensus 460 ~l~~~~~~~~~l--~~~~~i~~L~~ll~ 485 (704)
++-....+-..+ -+.|.||.|..-+-
T Consensus 552 ~~~~~da~~pl~~sd~~~dipsle~~l~ 579 (898)
T COG5240 552 NMRLSDACEPLFSSDELGDIPSLELELI 579 (898)
T ss_pred hhhhhhhhhccccccccCCcchhHHhhh
Confidence 984333332211 23366777665443
No 130
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=97.59 E-value=0.00015 Score=59.65 Aligned_cols=50 Identities=28% Similarity=0.494 Sum_probs=45.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCChhhhccchhcHHHHHH
Q 005282 638 IMLMYELSEAYNATTLKQSCILFILEKFDKMRNKPWFFRLIRCVLPEIRN 687 (704)
Q Consensus 638 ~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~L~~~~~~~l~~ 687 (704)
|+.++.+|..|++.+|.+.|.+||..||.++..+++|.+||.+.+..+++
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~ 50 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILS 50 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHH
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHh
Confidence 78999999999999999999999999999999999999999887777766
No 131
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.59 E-value=0.0024 Score=71.25 Aligned_cols=281 Identities=15% Similarity=0.031 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHhhc--ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CC---hhhHHHHH
Q 005282 67 AAKTASHALVEFAK--NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VK---PEHQQIIV 140 (704)
Q Consensus 67 ~~~~a~~~L~~l~~--~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~---~~~~~~~~ 140 (704)
.+.+|+..|..++. +.+.+ -.-++|.++.++.++.. +||..|+.+|..+. .- +..-..+.
T Consensus 439 tK~~ALeLl~~lS~~i~de~~----LDRVlPY~v~l~~Ds~a----------~Vra~Al~Tlt~~L~~Vr~~~~~daniF 504 (1431)
T KOG1240|consen 439 TKLAALELLQELSTYIDDEVK----LDRVLPYFVHLLMDSEA----------DVRATALETLTELLALVRDIPPSDANIF 504 (1431)
T ss_pred hHHHHHHHHHHHhhhcchHHH----HhhhHHHHHHHhcCchH----------HHHHHHHHHHHHHHhhccCCCcccchhh
Confidence 46778888888776 22221 12358999999999976 99999999999887 21 11112233
Q ss_pred HcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHh
Q 005282 141 DTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTL 220 (704)
Q Consensus 141 ~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l 220 (704)
-.=.+|.|-.++.+.... -++..-+..|+.|+..... +.+.+.-.....+++.++.+ ...+.
T Consensus 505 ~eYlfP~L~~l~~d~~~~-------~vRiayAsnla~LA~tA~r----Fle~~q~~~~~g~~n~~nse-------t~~~~ 566 (1431)
T KOG1240|consen 505 PEYLFPHLNHLLNDSSAQ-------IVRIAYASNLAQLAKTAYR----FLELTQELRQAGMLNDPNSE-------TAPEQ 566 (1431)
T ss_pred HhhhhhhhHhhhccCccc-------eehhhHHhhHHHHHHHHHH----HHHHHHHHHhcccccCcccc-------ccccc
Confidence 233567777777664221 5555666667777642211 11111111111122322222 00000
Q ss_pred ccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHH
Q 005282 221 AFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALL 300 (704)
Q Consensus 221 ~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~ 300 (704)
. .......+. .++-+.+..++.++++.|++.-+..|.-||.- ..+.-.+.=.+++|+.+|++.++.+|..-...
T Consensus 567 ~--~~~~~~~L~-~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~F---FGk~ksND~iLshLiTfLNDkDw~LR~aFfds 640 (1431)
T KOG1240|consen 567 N--YNTELQALH-HTVEQMVSSLLSDSPPIVKRALLESIIPLCVF---FGKEKSNDVILSHLITFLNDKDWRLRGAFFDS 640 (1431)
T ss_pred c--cchHHHHHH-HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH---hhhcccccchHHHHHHHhcCccHHHHHHHHhh
Confidence 0 011111111 12334566777788889999888888888732 11111122368899999999988887665555
Q ss_pred HHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHH
Q 005282 301 LGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNA 380 (704)
Q Consensus 301 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a 380 (704)
|..++..- ...-.+..++|.|...|.++.+.|...|+.+|..|+...--+...+ ...++...-+|-+.+.-+|..+
T Consensus 641 I~gvsi~V---G~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v-~~i~~~v~PlL~hPN~WIR~~~ 716 (1431)
T KOG1240|consen 641 IVGVSIFV---GWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAV-KDILQDVLPLLCHPNLWIRRAV 716 (1431)
T ss_pred ccceEEEE---eeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHH-HHHHHhhhhheeCchHHHHHHH
Confidence 55443211 1112345678999999999999999999999999987654433222 1234445566778899999999
Q ss_pred HHHHHHccc
Q 005282 381 AFALYGLAD 389 (704)
Q Consensus 381 ~~~L~~l~~ 389 (704)
+.++...+.
T Consensus 717 ~~iI~~~~~ 725 (1431)
T KOG1240|consen 717 LGIIAAIAR 725 (1431)
T ss_pred HHHHHHHHh
Confidence 999988875
No 132
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.59 E-value=0.00025 Score=65.13 Aligned_cols=88 Identities=16% Similarity=0.275 Sum_probs=66.5
Q ss_pred CCCcccEEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCC--ceEcCCCCHHHHHHHHHHHhcCcccc---ChhhH
Q 005282 532 NPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAK--DVEIPNIRWNVFELMMRFIYTGNVDV---SVDIA 606 (704)
Q Consensus 532 ~~~~~d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~--~i~l~~~~~~~~~~~l~~~Y~~~~~~---~~~~~ 606 (704)
-....|+-++...+.|++||.+|++|||+|+.+.++........ .|..-+++...|..||+|+|+|..-. ...+.
T Consensus 127 ~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~tgEfgmEd~~fqn~ 206 (401)
T KOG2838|consen 127 RKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLITGEFGMEDLGFQNS 206 (401)
T ss_pred eeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHHhcccchhhcCCchH
Confidence 34567899999999999999999999999999988654322222 34455788999999999999997643 33456
Q ss_pred HHHHHHHhhhChH
Q 005282 607 QDLLRAADQYLLE 619 (704)
Q Consensus 607 ~~ll~~A~~~~~~ 619 (704)
.-|-.++.-|+..
T Consensus 207 diL~QL~edFG~~ 219 (401)
T KOG2838|consen 207 DILEQLCEDFGCF 219 (401)
T ss_pred HHHHHHHHhhCCc
Confidence 6666777777654
No 133
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.58 E-value=0.0042 Score=59.13 Aligned_cols=221 Identities=15% Similarity=0.159 Sum_probs=141.0
Q ss_pred HHHHHHHHHHHHhhhcChhhhhhhhccC-CcHHHHHHhcC--CCHHHHHHHHHHHHHhccCCchhhHHhHh-cCChHHHH
Q 005282 166 GVIRRAADAITNLAHENANIKTRVRVED-GIPPLVELLKF--VDVKVQRAAAGALRTLAFKNDENKKLIVE-CNALPTLV 241 (704)
Q Consensus 166 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~-~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~ 241 (704)
-.+..|+.++.++.. .++.|......+ .-..++.+++. ++..++.+.+-++|.++. ++...+.+-. ...+..++
T Consensus 164 lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~aqdi~K~~dli~dli 241 (432)
T COG5231 164 LTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKECAQDIDKMDDLINDLI 241 (432)
T ss_pred HHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHH
Confidence 346678888888886 444555444444 45667777774 567899999999999997 6666544332 23466677
Q ss_pred HhhcC-CCHHHHHHHHHHHHHHhcCCh-hhHHHHHHcCCHHHHHHHhcCC---ChhHHHHHHHHHHHHhcc---------
Q 005282 242 LMLRS-EDASVHFEAVGVIGNLVHSSP-SIKKEVILAGALQPVIGLLSSS---CSESKREAALLLGQFAAA--------- 307 (704)
Q Consensus 242 ~lL~~-~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~ll~~~---~~~~~~~a~~~L~~l~~~--------- 307 (704)
++.+. ....|.+.++.++.|++...+ .......-.|-+..-+.+|... +.+++...-..=..+...
T Consensus 242 ~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~ 321 (432)
T COG5231 242 AIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDN 321 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 77764 457889999999999986332 2333333344344444444322 333322211111111000
Q ss_pred ------------C---------CcchHHHHhc--CChHHHHHhhCCCCHH-HHHHHHHHHHHhhc-CCchhhhHHhhCCh
Q 005282 308 ------------D---------SNSKVHIVQR--GAVRPLIEMLQSPDSQ-LKEMSAFALGRLAQ-DTHNQAGIAQDGGI 362 (704)
Q Consensus 308 ------------~---------~~~~~~~~~~--~~i~~L~~ll~~~~~~-v~~~a~~~L~~l~~-~~~~~~~~~~~~~~ 362 (704)
+ ..+...+.+. .++..|.++++...+. ....||.-+..+.. .++....+...|+-
T Consensus 322 Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k 401 (432)
T COG5231 322 YLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVK 401 (432)
T ss_pred HHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhH
Confidence 0 1223333333 4678899999876554 44567777777775 46677778888999
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHcc
Q 005282 363 LPLLKLLDSKNGSLQHNAAFALYGLA 388 (704)
Q Consensus 363 ~~L~~ll~~~~~~v~~~a~~~L~~l~ 388 (704)
+.+++++++++++|+.+|+.++..+.
T Consensus 402 ~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 402 EIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 99999999999999999999988764
No 134
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.58 E-value=0.0008 Score=64.75 Aligned_cols=180 Identities=20% Similarity=0.150 Sum_probs=115.7
Q ss_pred cCCCHHHHHHHHHHHHHhccCC--chhhHHhHh--cCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCC
Q 005282 203 KFVDVKVQRAAAGALRTLAFKN--DENKKLIVE--CNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGA 278 (704)
Q Consensus 203 ~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~--~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 278 (704)
.+.++..+..++..|..++.++ ......+.. ..++..+...+.+....+...|+.++..++.......... -..+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY-ADIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH-HHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HHHH
Confidence 4678999999999999998755 223333322 1455677777777888899999999999986533332222 3357
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCC-hHHHHHhhCCCCHHHHHHHHHHHHHhhcCCc-hhhhH
Q 005282 279 LQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGA-VRPLIEMLQSPDSQLKEMSAFALGRLAQDTH-NQAGI 356 (704)
Q Consensus 279 l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~-i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~ 356 (704)
++.|+..+.++...++..|..+|..++...... ..+ .+.+...+.+.++.+|..++..+..+..... ....+
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~------~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l 169 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYS------PKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL 169 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcH------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence 889999999988888999999999998643301 112 5667777888999999999999999886544 22222
Q ss_pred Hh----hCChHHHHHhhcCCChhHHHHHHHHHHHccc
Q 005282 357 AQ----DGGILPLLKLLDSKNGSLQHNAAFALYGLAD 389 (704)
Q Consensus 357 ~~----~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 389 (704)
.. ...++.+..++.+.+++||..|-.++..+..
T Consensus 170 ~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 170 QKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp --HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 22 3456678888999999999999999999854
No 135
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.032 Score=62.07 Aligned_cols=252 Identities=16% Similarity=0.184 Sum_probs=148.9
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCC-ChhHHHHHHHHHHHHhccCCcchH
Q 005282 235 NALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSS-CSESKREAALLLGQFAAADSNSKV 313 (704)
Q Consensus 235 ~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~ 313 (704)
+++..|+..+++.+..|+..|+..++.++...|.. ....++...+.++.-. ++...+-++.+|+.++...=---.
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~----Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE----LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHH----HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 46777788888999999999999999999876632 2234566666655443 356678899999999853211110
Q ss_pred HHHhcCChHHHHHhhC--------CCCHHHHHHHHHHHHHhhcCCchh--hhHHhhCChHHHHHhhcCCChhHHHHHHHH
Q 005282 314 HIVQRGAVRPLIEMLQ--------SPDSQLKEMSAFALGRLAQDTHNQ--AGIAQDGGILPLLKLLDSKNGSLQHNAAFA 383 (704)
Q Consensus 314 ~~~~~~~i~~L~~ll~--------~~~~~v~~~a~~~L~~l~~~~~~~--~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~ 383 (704)
.+ ..+++.+++.+. +....+|..||.++|.++...... ..+...=.-..|...+-+.+.++|+.|..+
T Consensus 417 ~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAA 494 (1133)
T KOG1943|consen 417 LL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAA 494 (1133)
T ss_pred HH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHH
Confidence 01 134566666553 234689999999999999654332 222211111123344566788899999999
Q ss_pred HHHcccCCch----hhHHHhhCCcccccccccccccchHH---HHHHHHHHHHHhhcchhHHHHHH-HhhccHHHHHHHH
Q 005282 384 LYGLADNEDN----VADLVRVGGVQKLQDGEFTVQPTKDC---VARTLKRLEEKVHGRVLNHLLYL-LRVADRAVKRRVT 455 (704)
Q Consensus 384 L~~l~~~~~~----~~~l~~~g~i~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~L~~l-l~~~~~~v~~~a~ 455 (704)
+....+-..+ ...+...+.+.. .....| ++..+.... .+...+++.++.. +..-++.+++.++
T Consensus 495 lqE~VGR~~n~p~Gi~Lis~~dy~sV--------~~rsNcy~~l~~~ia~~~-~y~~~~f~~L~t~Kv~HWd~~irelaa 565 (1133)
T KOG1943|consen 495 LQENVGRQGNFPHGISLISTIDYFSV--------TNRSNCYLDLCVSIAEFS-GYREPVFNHLLTKKVCHWDVKIRELAA 565 (1133)
T ss_pred HHHHhccCCCCCCchhhhhhcchhhh--------hhhhhHHHHHhHHHHhhh-hHHHHHHHHHHhcccccccHHHHHHHH
Confidence 9887753222 233332222221 111111 111111111 1122344444444 4556899999999
Q ss_pred HHHHhccCCCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhh
Q 005282 456 LALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLAT 504 (704)
Q Consensus 456 ~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~ 504 (704)
++|.+|+..... ....+.++.|+....+++...+.-+..+...+..
T Consensus 566 ~aL~~Ls~~~pk---~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~ 611 (1133)
T KOG1943|consen 566 YALHKLSLTEPK---YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG 611 (1133)
T ss_pred HHHHHHHHhhHH---hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence 999998543221 1224567888888888777777655554444433
No 136
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.55 E-value=0.026 Score=65.02 Aligned_cols=287 Identities=18% Similarity=0.120 Sum_probs=142.8
Q ss_pred ChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCC-hhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHH
Q 005282 93 AVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVK-PEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRA 171 (704)
Q Consensus 93 ~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a 171 (704)
.||.|.++=-+++. .|+.....++..|..+ ....+... ..++.-|+.-|.+. .|.+|+.+
T Consensus 999 LIPrLyRY~yDP~~----------~Vq~aM~sIW~~Li~D~k~~vd~y~-neIl~eLL~~lt~k--------ewRVReas 1059 (1702)
T KOG0915|consen 999 LIPRLYRYQYDPDK----------KVQDAMTSIWNALITDSKKVVDEYL-NEILDELLVNLTSK--------EWRVREAS 1059 (1702)
T ss_pred hhHHHhhhccCCcH----------HHHHHHHHHHHHhccChHHHHHHHH-HHHHHHHHHhccch--------hHHHHHHH
Confidence 47888887777654 7776666666666644 44444333 22334444333332 37999999
Q ss_pred HHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHH---HHHHHHhccC--Cc---hhhHHhHhcCChHHHHH-
Q 005282 172 ADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAA---AGALRTLAFK--ND---ENKKLIVECNALPTLVL- 242 (704)
Q Consensus 172 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a---~~~L~~l~~~--~~---~~~~~~~~~~~i~~L~~- 242 (704)
|.+|..|..+.+.-...-.-......+++.+.+-...+|++| +.+|..++.. +. .....+. ..++|.|+.
T Consensus 1060 clAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l-~~iLPfLl~~ 1138 (1702)
T KOG0915|consen 1060 CLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEAL-DIILPFLLDE 1138 (1702)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHH-HHHHHHHhcc
Confidence 999999997544322111112333444455544455666554 4455555421 11 1111111 123455443
Q ss_pred hhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHH-----------HHHHHHHHHhccCCcc
Q 005282 243 MLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKR-----------EAALLLGQFAAADSNS 311 (704)
Q Consensus 243 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~-----------~a~~~L~~l~~~~~~~ 311 (704)
-+-+.-+++|+.++.++..++.+.+...... -...++.|+.....-.+.+.. +++..++.-+..+...
T Consensus 1139 gims~v~evr~~si~tl~dl~Kssg~~lkP~-~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspm 1217 (1702)
T KOG0915|consen 1139 GIMSKVNEVRRFSIGTLMDLAKSSGKELKPH-FPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPM 1217 (1702)
T ss_pred CcccchHHHHHHHHHHHHHHHHhchhhhcch-hhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcH
Confidence 1126678999999999999997654322111 134566666666554444422 2222221111111111
Q ss_pred hHHH----------HhcCChHHHHHhhCCC-CHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHH
Q 005282 312 KVHI----------VQRGAVRPLIEMLQSP-DSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNA 380 (704)
Q Consensus 312 ~~~~----------~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a 380 (704)
...+ .-...+|.+.++++.+ .-..+..++..+..|+..-.....-.....+..++..+++.++.+++..
T Consensus 1218 meTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kaf 1297 (1702)
T KOG0915|consen 1218 METINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAF 1297 (1702)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHH
Confidence 1110 0012344444444432 2223333444444444210000000000112334555577899999999
Q ss_pred HHHHHHccc--CCchhhHHHhh
Q 005282 381 AFALYGLAD--NEDNVADLVRV 400 (704)
Q Consensus 381 ~~~L~~l~~--~~~~~~~l~~~ 400 (704)
+.+.+.|+. .++..+.+++.
T Consensus 1298 AsAmG~L~k~Ss~dq~qKLie~ 1319 (1702)
T KOG0915|consen 1298 ASAMGYLAKFSSPDQMQKLIET 1319 (1702)
T ss_pred HHHHHHHHhcCChHHHHHHHHH
Confidence 999999985 55566666653
No 137
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.55 E-value=0.00019 Score=57.77 Aligned_cols=87 Identities=23% Similarity=0.370 Sum_probs=66.3
Q ss_pred EEEEEcCeEeehhHHHHh-hcCHHHHHhhcCC---CCCCCCCceEcCCCCHHHHHHHHHHHhc-CccccC-hhhHHHHHH
Q 005282 538 VTFVVEGKQFYAHRICLL-ASSDAFRAMFDGG---YKEKNAKDVEIPNIRWNVFELMMRFIYT-GNVDVS-VDIAQDLLR 611 (704)
Q Consensus 538 ~~~~~~~~~~~~hk~iL~-~~s~~f~~~f~~~---~~e~~~~~i~l~~~~~~~~~~~l~~~Y~-~~~~~~-~~~~~~ll~ 611 (704)
|.+-|||+.|.+-+..|. ....+|..++++. ........+-+ |=++..|+.+|+|+-+ +.+..+ ......+++
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylr~~~~l~~~~~~~~~~l~~ 79 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRDPELFEYILNYLRTGGKLPIPDEICLEELLE 79 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS-HHHHHHHHHHHHHTSSB---TTS-HHHHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccChhhhhHHHHHHhhcCccCCCCchhHHHHHH
Confidence 578899999999999998 5578999999965 33344556655 5699999999999999 666654 567889999
Q ss_pred HHhhhChHhH-HHHH
Q 005282 612 AADQYLLEGL-KRLC 625 (704)
Q Consensus 612 ~A~~~~~~~l-~~~c 625 (704)
-|.+|+++.+ ++.|
T Consensus 80 Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 80 EAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHT-HHHHBHHC
T ss_pred HHHHcCCCccccCCC
Confidence 9999999998 6655
No 138
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.51 E-value=0.01 Score=65.47 Aligned_cols=332 Identities=17% Similarity=0.109 Sum_probs=203.3
Q ss_pred HHHHHHHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCc
Q 005282 117 EVEKECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGI 195 (704)
Q Consensus 117 ~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i 195 (704)
.++..++..+..++ ..++-... . .+-+++..+...+- ...+..++..++......+ ...++....
T Consensus 174 ~vr~k~ve~l~~v~~~~~~~~~~---~-~lv~l~~~l~~~d~-------~~sr~sacglf~~~~~~~~---~~~vk~elr 239 (759)
T KOG0211|consen 174 GVREKAVESLLKVAVGLPKEKLR---E-HLVPLLKRLATGDW-------FQSRLSACGLFGKLYVSLP---DDAVKRELR 239 (759)
T ss_pred HHHHHHHHHHHHHHHhcChHHHH---H-HHHHHHHHccchhh-------hhcchhhhhhhHHhccCCC---hHHHHHHHH
Confidence 68899999998888 44432221 0 11233333332211 1344566666666653222 124445556
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHH
Q 005282 196 PPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVIL 275 (704)
Q Consensus 196 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 275 (704)
+..-++.++.++.++..+..-+++++..- .......++++.+..+..++...|+..|...+.++...-+... =..
T Consensus 240 ~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~---~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~--d~~ 314 (759)
T KOG0211|consen 240 PIVQSLCQDDTPMVRRAVASNLGNIAKVL---ESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD--DVV 314 (759)
T ss_pred HHHHhhccccchhhHHHHHhhhHHHHHHH---HHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch--hhh
Confidence 66777788889999999999999988522 2266677899999999999999999999998888874321111 223
Q ss_pred cCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC--Cchh
Q 005282 276 AGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQD--THNQ 353 (704)
Q Consensus 276 ~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~ 353 (704)
..+.+.++....++++.++.........+...-.. ........+....+++....+.+..++.-...++.. .+..
T Consensus 315 ~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~---~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~ 391 (759)
T KOG0211|consen 315 KSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP---SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCY 391 (759)
T ss_pred hhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc---ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccc
Confidence 45678888888898888887777666655432111 122234577788888888888888777777777643 3344
Q ss_pred hhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHccc-CCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhh
Q 005282 354 AGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD-NEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVH 432 (704)
Q Consensus 354 ~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (704)
..+..+..++.+..+..+.+..++...+.....++- .+ ....+..
T Consensus 392 ~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~-------k~~ti~~--------------------------- 437 (759)
T KOG0211|consen 392 PNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP-------KERTISE--------------------------- 437 (759)
T ss_pred cccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC-------cCcCccc---------------------------
Confidence 555666667777777788888888877776666642 22 2222222
Q ss_pred cchhHHHHHHHhhccHHHHHHHHHHHHhc-cCCCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282 433 GRVLNHLLYLLRVADRAVKRRVTLALAHL-CAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKA 506 (704)
Q Consensus 433 ~~~~~~L~~ll~~~~~~v~~~a~~~L~~l-~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 506 (704)
..+.++.++.+..+.|+.+..+.+..+ ...+..........-++.+..+....+..++.+..+.+-.++...
T Consensus 438 --llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~ 510 (759)
T KOG0211|consen 438 --LLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQL 510 (759)
T ss_pred --cChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhh
Confidence 234455566666677777766665555 222211122223344555555555555555555555555555433
No 139
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=97.51 E-value=0.00047 Score=52.38 Aligned_cols=79 Identities=27% Similarity=0.426 Sum_probs=62.9
Q ss_pred EEEEE-cCeEeehhHHHHhhcCHHHHHhhcCCC--CCCCCCceEcCCCCHHHHHHHHHHH-----hcCc------cccCh
Q 005282 538 VTFVV-EGKQFYAHRICLLASSDAFRAMFDGGY--KEKNAKDVEIPNIRWNVFELMMRFI-----YTGN------VDVSV 603 (704)
Q Consensus 538 ~~~~~-~~~~~~~hk~iL~~~s~~f~~~f~~~~--~e~~~~~i~l~~~~~~~~~~~l~~~-----Y~~~------~~~~~ 603 (704)
|.++. +|++|-..|.+- .-|+-.|+||+|.+ .+....++.+++++...++.+.+|+ |++. .++++
T Consensus 19 VkLvS~Ddhefiikre~A-mtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ipp 97 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKREHA-MTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIPP 97 (112)
T ss_pred eEeecCCCcEEEEeehhh-hhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCCCCCCH
Confidence 44554 577888877654 48999999999764 5666678999999999999999998 3443 34789
Q ss_pred hhHHHHHHHHhhhC
Q 005282 604 DIAQDLLRAADQYL 617 (704)
Q Consensus 604 ~~~~~ll~~A~~~~ 617 (704)
+.+.+||.+|+++.
T Consensus 98 emaleLL~aAn~Le 111 (112)
T KOG3473|consen 98 EMALELLMAANYLE 111 (112)
T ss_pred HHHHHHHHHhhhhc
Confidence 99999999999985
No 140
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.49 E-value=0.016 Score=54.07 Aligned_cols=199 Identities=28% Similarity=0.262 Sum_probs=129.4
Q ss_pred hCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHH
Q 005282 90 DNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIR 169 (704)
Q Consensus 90 ~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~ 169 (704)
+..+++.|+..|...+. ++-||..|..+|+++. .+ +.++.+-+..+++.. ++.+
T Consensus 65 ~~~Av~~l~~vl~desq--------~pmvRhEAaealga~~-~~---------~~~~~l~k~~~dp~~--------~v~E 118 (289)
T KOG0567|consen 65 DEDAVPVLVEVLLDESQ--------EPMVRHEAAEALGAIG-DP---------ESLEILTKYIKDPCK--------EVRE 118 (289)
T ss_pred cchhhHHHHHHhccccc--------chHHHHHHHHHHHhhc-ch---------hhHHHHHHHhcCCcc--------ccch
Confidence 34688999999999887 6789999999999988 32 234555555544433 7777
Q ss_pred HHHHHHHHhhhcChhhh----hhh--h------ccCCcHHHHHHhcCCC-H-HHHHHHHHHHHHhccCCchhhHHhHhcC
Q 005282 170 RAADAITNLAHENANIK----TRV--R------VEDGIPPLVELLKFVD-V-KVQRAAAGALRTLAFKNDENKKLIVECN 235 (704)
Q Consensus 170 ~a~~~L~~l~~~~~~~~----~~~--~------~~~~i~~L~~ll~~~~-~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 235 (704)
.|..++..+--.+.-.+ ... + ..+-+..+-..+.+.+ + --+..|...|+|+.. ..
T Consensus 119 Tc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~-----------Ee 187 (289)
T KOG0567|consen 119 TCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT-----------EE 187 (289)
T ss_pred HHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc-----------HH
Confidence 77777777642111000 000 0 1111233333333222 2 224455566666542 12
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhc--CCChhHHHHHHHHHHHHhccCCcchH
Q 005282 236 ALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLS--SSCSESKREAALLLGQFAAADSNSKV 313 (704)
Q Consensus 236 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~ 313 (704)
.+..|.+-+..++.-.|..++.+++.+-. + -.++.|.+.|. ..++-+|..|+.+|+.++.
T Consensus 188 aI~al~~~l~~~SalfrhEvAfVfGQl~s--~---------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~------- 249 (289)
T KOG0567|consen 188 AINALIDGLADDSALFRHEVAFVFGQLQS--P---------AAIPSLIKVLLDETEHPMVRHEAAEALGAIAD------- 249 (289)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHhhccc--h---------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC-------
Confidence 36667777888888999999999998842 2 24777777775 3467789999999999864
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 005282 314 HIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLA 347 (704)
Q Consensus 314 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 347 (704)
...++.|...+.++++-+++.+..+|..+-
T Consensus 250 ----e~~~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 250 ----EDCVEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred ----HHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 235788889999888888888888776654
No 141
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.46 E-value=0.00044 Score=54.98 Aligned_cols=86 Identities=31% Similarity=0.456 Sum_probs=69.3
Q ss_pred HHHHHHHh-cCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHH
Q 005282 279 LQPVIGLL-SSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIA 357 (704)
Q Consensus 279 l~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 357 (704)
++.|++.+ .++++.++..++.+|+++.. ..+++.|..+++++++.++..|+++|+.+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD-----------PEAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH-----------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 57788888 88899999999999995421 245899999999999999999999999873
Q ss_pred hhCChHHHHHhhcCC-ChhHHHHHHHHHH
Q 005282 358 QDGGILPLLKLLDSK-NGSLQHNAAFALY 385 (704)
Q Consensus 358 ~~~~~~~L~~ll~~~-~~~v~~~a~~~L~ 385 (704)
....++.|.+++.++ +..++..|..+|+
T Consensus 60 ~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 244778899988765 5567888988874
No 142
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.38 E-value=0.00059 Score=54.38 Aligned_cols=68 Identities=18% Similarity=0.196 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhc
Q 005282 118 VEKECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRV 191 (704)
Q Consensus 118 v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 191 (704)
++...+++|+|++ .++.+++.+.+.|++|.+++...-++.+ |-++++|.+++.+++.++++++..+..
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~n------P~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHN------PFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCccc------HHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4667899999999 9999999999999999999987665553 489999999999999999999886554
No 143
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.34 E-value=0.015 Score=61.19 Aligned_cols=358 Identities=20% Similarity=0.160 Sum_probs=191.9
Q ss_pred hHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHH
Q 005282 94 VPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAAD 173 (704)
Q Consensus 94 i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~ 173 (704)
+|.++..|.+.... ...-......+|+.+|.++..-+.+. +.++..+........ ..+.....+.
T Consensus 1 ~p~ll~~Lpd~~~~-------~~~~~~~~L~~l~~ls~~~~i~~~~~-----~~ll~kl~~~~~~~~---~~~~~~~il~ 65 (415)
T PF12460_consen 1 LPALLALLPDSDSS-------TDSNYERILEALAALSTSPQILETLS-----IRLLNKLSIVCQSES---SSDYCHAILS 65 (415)
T ss_pred CchHHhhCCCCCCc-------chhHHHHHHHHHHHHHCChhHHHHHH-----HHHHHHHHHHhcCCC---ChHHHHHHHH
Confidence 46777788777651 11567889999999997777655544 244444433221111 1266667777
Q ss_pred HHHHhhhcChhhh-----hhhhccCCcHHHHHHhcC-----C--CHHHHHHHHHHHHHhccCCchh-hHHhHhcCChHHH
Q 005282 174 AITNLAHENANIK-----TRVRVEDGIPPLVELLKF-----V--DVKVQRAAAGALRTLAFKNDEN-KKLIVECNALPTL 240 (704)
Q Consensus 174 ~L~~l~~~~~~~~-----~~~~~~~~i~~L~~ll~~-----~--~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~L 240 (704)
++.++........ ....+...++.++...-. . ++.+...+...+..+...-+.. ++.+. ..+
T Consensus 66 tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~-----~~~ 140 (415)
T PF12460_consen 66 TLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEIL-----DEL 140 (415)
T ss_pred HHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHH-----HHH
Confidence 7777764332222 233344467777766642 1 2566666666666665533333 33332 223
Q ss_pred HHhhc----------CC------CHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcC-CChhHHHHHHHHHHH
Q 005282 241 VLMLR----------SE------DASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSS-SCSESKREAALLLGQ 303 (704)
Q Consensus 241 ~~lL~----------~~------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~~~~a~~~L~~ 303 (704)
..+.. .. ......-...+++.+- ++..-. -....+..++.+..+ .++..+..++..++-
T Consensus 141 ~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~---~~~~~~-~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~ 216 (415)
T PF12460_consen 141 YSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLR---KDVSLP-DLEELLQSLLNLALSSEDEFSRLAALQLLAS 216 (415)
T ss_pred HHHHccccccCCCCccccccccccccHHHHHHHHHHcCC---cccCcc-CHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 33222 01 1112222223333332 221110 112256677766644 446667788888887
Q ss_pred HhccCCcchHHHHhcCChHHHHHhh-CCCCHHHHH----HHHHHHHHhh-cCCchhhhHHhhCChHHHHHhhcCCChhHH
Q 005282 304 FAAADSNSKVHIVQRGAVRPLIEML-QSPDSQLKE----MSAFALGRLA-QDTHNQAGIAQDGGILPLLKLLDSKNGSLQ 377 (704)
Q Consensus 304 l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~----~a~~~L~~l~-~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~ 377 (704)
++...+... .. .+++..+.... ...+...+. ...|...-+. ++.+... ..+..|++++.+ +++.
T Consensus 217 LvNK~~~~~--~l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~-----~~~~~L~~lL~~--~~~g 286 (415)
T PF12460_consen 217 LVNKWPDDD--DL-DEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT-----ELLDKLLELLSS--PELG 286 (415)
T ss_pred HHcCCCChh--hH-HHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH-----HHHHHHHHHhCC--hhhH
Confidence 764322211 00 12334444333 222333333 3334443333 3332222 234567777775 7778
Q ss_pred HHHHHHHHHcccC-CchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHH
Q 005282 378 HNAAFALYGLADN-EDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTL 456 (704)
Q Consensus 378 ~~a~~~L~~l~~~-~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~ 456 (704)
..++.++.-+..+ ++.... .....+..|-+ . ++-..++|.|+...+..+.+.+.+...
T Consensus 287 ~~aA~~f~il~~d~~~~l~~-~~~a~vklLyk----Q----------------R~F~~~~p~L~~~~~~~~~~~k~~yL~ 345 (415)
T PF12460_consen 287 QQAAKAFGILLSDSDDVLNK-ENHANVKLLYK----Q----------------RFFTQVLPKLLEGFKEADDEIKSNYLT 345 (415)
T ss_pred HHHHHHHhhHhcCcHHhcCc-cccchhhhHHh----H----------------HHHHHHHHHHHHHHhhcChhhHHHHHH
Confidence 8888888888776 332221 11111111110 0 111235677778777777778899999
Q ss_pred HHHhccCCCccceeeec-CCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282 457 ALAHLCAPDDCKTIFID-NNGLELLLGLLESTSVKQREESSVALYKLATKA 506 (704)
Q Consensus 457 ~L~~l~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 506 (704)
+|.++..+-+......+ ...+|.|++-+..++++++..+..+|..+..+.
T Consensus 346 ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 346 ALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 99999654443322222 256888888888899999999999999988866
No 144
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.04 Score=61.42 Aligned_cols=256 Identities=20% Similarity=0.206 Sum_probs=154.0
Q ss_pred CChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CCh-hhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHH
Q 005282 92 GAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKP-EHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIR 169 (704)
Q Consensus 92 g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~-~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~ 169 (704)
+++..|++.|.+.+. .|+..|+..++.++ ..| +..+. ++..++.++.-.++ +..-.
T Consensus 341 ~vie~Lls~l~d~dt----------~VrWSaAKg~grvt~rlp~~Lad~-----vi~svid~~~p~e~-------~~aWH 398 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDT----------VVRWSAAKGLGRVTSRLPPELADQ-----VIGSVIDLFNPAED-------DSAWH 398 (1133)
T ss_pred HHHHHHHHhccCCcc----------hhhHHHHHHHHHHHccCcHHHHHH-----HHHHHHHhcCcCCc-------hhHHH
Confidence 568889999999876 89999999999999 555 22222 44556664443332 15566
Q ss_pred HHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc--------CCCHHHHHHHHHHHHHhccCCchhh-HHhHhcCChHHH
Q 005282 170 RAADAITNLAHENANIKTRVRVEDGIPPLVELLK--------FVDVKVQRAAAGALRTLAFKNDENK-KLIVECNALPTL 240 (704)
Q Consensus 170 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--------~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~i~~L 240 (704)
.++.+|+.++...--... .-..++|.++.-+. +....+|.+|+.++|.++......- +.+...=.-..|
T Consensus 399 gacLaLAELA~rGlLlps--~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL 476 (1133)
T KOG1943|consen 399 GACLALAELALRGLLLPS--LLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALL 476 (1133)
T ss_pred HHHHHHHHHHhcCCcchH--HHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHH
Confidence 889999999852211110 11245666666554 2346799999999999987433321 112211112233
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCC---hhHHHHHHHHHHHHhccCCcchHHHHh
Q 005282 241 VLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSC---SESKREAALLLGQFAAADSNSKVHIVQ 317 (704)
Q Consensus 241 ~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~---~~~~~~a~~~L~~l~~~~~~~~~~~~~ 317 (704)
...+.+.+...|+.|..++-...-. .|-.|.=+.++..-+ -..+.++-..+..-....+..+..+
T Consensus 477 ~~AlFDrevncRRAAsAAlqE~VGR----------~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~-- 544 (1133)
T KOG1943|consen 477 IVALFDREVNCRRAASAALQENVGR----------QGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPV-- 544 (1133)
T ss_pred HHHhcCchhhHhHHHHHHHHHHhcc----------CCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHH--
Confidence 4455678888999988888665422 111211112222211 1123444444443333333333322
Q ss_pred cCChHHHHHh-hCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHccc
Q 005282 318 RGAVRPLIEM-LQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD 389 (704)
Q Consensus 318 ~~~i~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 389 (704)
++.|+.. +.+-+..+++.++++|.+|+.... +....+.++++++...+++...+.-+..+.+.+..
T Consensus 545 ---f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~p---k~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~ 611 (1133)
T KOG1943|consen 545 ---FNHLLTKKVCHWDVKIRELAAYALHKLSLTEP---KYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG 611 (1133)
T ss_pred ---HHHHHhcccccccHHHHHHHHHHHHHHHHhhH---HhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence 3444443 566799999999999999886532 34455678889998888888888777777666653
No 145
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.29 E-value=0.0084 Score=67.10 Aligned_cols=242 Identities=19% Similarity=0.069 Sum_probs=149.7
Q ss_pred HHHHHHHHHHHhhc--CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhh---hcChhhhhhhhc
Q 005282 117 EVEKECAFALGLLA--VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLA---HENANIKTRVRV 191 (704)
Q Consensus 117 ~v~~~a~~~L~~l~--~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~---~~~~~~~~~~~~ 191 (704)
+.+..|+..|..++ -+.+.+- .-++|.++.++.++.. +++..|+.+|..+. .+-+..-..+..
T Consensus 438 ~tK~~ALeLl~~lS~~i~de~~L----DRVlPY~v~l~~Ds~a--------~Vra~Al~Tlt~~L~~Vr~~~~~daniF~ 505 (1431)
T KOG1240|consen 438 QTKLAALELLQELSTYIDDEVKL----DRVLPYFVHLLMDSEA--------DVRATALETLTELLALVRDIPPSDANIFP 505 (1431)
T ss_pred hhHHHHHHHHHHHhhhcchHHHH----hhhHHHHHHHhcCchH--------HHHHHHHHHHHHHHhhccCCCcccchhhH
Confidence 78889999999999 3333321 2357999999998876 89999999888875 233334445666
Q ss_pred cCCcHHHHHHhcC-CCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhH
Q 005282 192 EDGIPPLVELLKF-VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIK 270 (704)
Q Consensus 192 ~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 270 (704)
.-.+|.|-.++.+ ....+|..-+.+|..|+. ...+ +.+.+.-.....++++++.+ ...+. ......
T Consensus 506 eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~--tA~r--Fle~~q~~~~~g~~n~~nse-------t~~~~--~~~~~~ 572 (1431)
T KOG1240|consen 506 EYLFPHLNHLLNDSSAQIVRIAYASNLAQLAK--TAYR--FLELTQELRQAGMLNDPNSE-------TAPEQ--NYNTEL 572 (1431)
T ss_pred hhhhhhhHhhhccCccceehhhHHhhHHHHHH--HHHH--HHHHHHHHHhcccccCcccc-------ccccc--ccchHH
Confidence 6778888888887 556777777788888874 1111 11111111111223333332 00000 001111
Q ss_pred HHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q 005282 271 KEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDT 350 (704)
Q Consensus 271 ~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 350 (704)
+++ ..++-+....++.++++-+++.-+..|.-+|..-...+ .+.=++..|+.+|.+.|..+|..-...|.-++..-
T Consensus 573 ~~L-~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~k---sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~V 648 (1431)
T KOG1240|consen 573 QAL-HHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEK---SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFV 648 (1431)
T ss_pred HHH-HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcc---cccchHHHHHHHhcCccHHHHHHHHhhccceEEEE
Confidence 111 22344556677777777777777777777763211000 01126899999999999999887777776555322
Q ss_pred chhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHccc
Q 005282 351 HNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD 389 (704)
Q Consensus 351 ~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 389 (704)
.- .-+++..+|.|.+-|.++.+-|...|+++|.-|+.
T Consensus 649 G~--rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik 685 (1431)
T KOG1240|consen 649 GW--RSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIK 685 (1431)
T ss_pred ee--eeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHH
Confidence 11 12445566777888899999999999999988864
No 146
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=97.23 E-value=0.0019 Score=52.92 Aligned_cols=80 Identities=16% Similarity=0.293 Sum_probs=57.7
Q ss_pred EEEEE-cCeEeehhHHHHhhcCHHHHHhhcCCCCCC-CCCceEcCCCCHHHHHHHHHHHhcCccc---------------
Q 005282 538 VTFVV-EGKQFYAHRICLLASSDAFRAMFDGGYKEK-NAKDVEIPNIRWNVFELMMRFIYTGNVD--------------- 600 (704)
Q Consensus 538 ~~~~~-~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~-~~~~i~l~~~~~~~~~~~l~~~Y~~~~~--------------- 600 (704)
+.++. +|..|.+.+.... .|..++.|+.+...+. ....|++++++...++.+++|++...-.
T Consensus 4 v~L~S~Dg~~f~v~~~~a~-~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~ 82 (104)
T smart00512 4 IKLISSDGEVFEVEREVAR-QSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHHVDDPPSVADKDDIPTWDA 82 (104)
T ss_pred EEEEeCCCCEEEecHHHHH-HHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHcccCCCCccccccccHHHH
Confidence 44544 7889999999875 8999999998643222 2258999999999999999999653211
Q ss_pred ----cChhhHHHHHHHHhhhCh
Q 005282 601 ----VSVDIAQDLLRAADQYLL 618 (704)
Q Consensus 601 ----~~~~~~~~ll~~A~~~~~ 618 (704)
++.+.+.+|+.+|+++++
T Consensus 83 ~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 83 EFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHcCCHHHHHHHHHHHHhhCC
Confidence 233456677777776653
No 147
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.22 E-value=0.036 Score=51.78 Aligned_cols=180 Identities=23% Similarity=0.246 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc--CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhh
Q 005282 167 VIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLK--FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLML 244 (704)
Q Consensus 167 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL 244 (704)
+....+.+|+.... ...++.|+..+. +..|-+|..|..+|..+.. .+.++.+-++.
T Consensus 52 lkhe~ay~LgQ~~~-----------~~Av~~l~~vl~desq~pmvRhEAaealga~~~-----------~~~~~~l~k~~ 109 (289)
T KOG0567|consen 52 LKHELAYVLGQMQD-----------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD-----------PESLEILTKYI 109 (289)
T ss_pred hccchhhhhhhhcc-----------chhhHHHHHHhcccccchHHHHHHHHHHHhhcc-----------hhhHHHHHHHh
Confidence 34455666666553 345788888887 4567888899999988873 23466677777
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhhH----HHH--------HHcCCHHHHHHHhcCCChhH--HHHHHHHHHHHhccCCc
Q 005282 245 RSEDASVHFEAVGVIGNLVHSSPSIK----KEV--------ILAGALQPVIGLLSSSCSES--KREAALLLGQFAAADSN 310 (704)
Q Consensus 245 ~~~~~~v~~~a~~~L~~l~~~~~~~~----~~~--------~~~~~l~~L~~ll~~~~~~~--~~~a~~~L~~l~~~~~~ 310 (704)
+++...|++.+..++..+-..+.... ... ...+-+..+-..|.+.+... +..+...|.|+-.
T Consensus 110 ~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~---- 185 (289)
T KOG0567|consen 110 KDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT---- 185 (289)
T ss_pred cCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc----
Confidence 67777788877777776643211100 000 01122334443333332222 4455556666521
Q ss_pred chHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcC--CChhHHHHHHHHHHHcc
Q 005282 311 SKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDS--KNGSLQHNAAFALYGLA 388 (704)
Q Consensus 311 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~v~~~a~~~L~~l~ 388 (704)
...+..|+.-+..++.-.|..++.+++.|-... .++.|.+.|.+ .++.||..|+.+|+.++
T Consensus 186 -------EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~~----------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa 248 (289)
T KOG0567|consen 186 -------EEAINALIDGLADDSALFRHEVAFVFGQLQSPA----------AIPSLIKVLLDETEHPMVRHEAAEALGAIA 248 (289)
T ss_pred -------HHHHHHHHHhcccchHHHHHHHHHHHhhccchh----------hhHHHHHHHHhhhcchHHHHHHHHHHHhhc
Confidence 124677777788888888999999998876543 56777777744 57899999999999986
Q ss_pred c
Q 005282 389 D 389 (704)
Q Consensus 389 ~ 389 (704)
.
T Consensus 249 ~ 249 (289)
T KOG0567|consen 249 D 249 (289)
T ss_pred C
Confidence 4
No 148
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.21 E-value=0.00014 Score=73.24 Aligned_cols=131 Identities=22% Similarity=0.198 Sum_probs=111.9
Q ss_pred CeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhcCccccChhhHH---HHHHHHhhhChHh
Q 005282 544 GKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVDIAQ---DLLRAADQYLLEG 620 (704)
Q Consensus 544 ~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~---~ll~~A~~~~~~~ 620 (704)
++.+.+|+.++++++++|+.|+..+..+.....+.+.+.+++.++.+..|.|...-.-..+... .++..+.+++...
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~~~ 188 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKNRH 188 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEeccchHHHHHhhcCChhhhhccccccHH
Confidence 5669999999999999999999987766666677888999999999999999976655555554 7888999999999
Q ss_pred HHHHHHHHHHhhCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH--HHHHhhCChhh
Q 005282 621 LKRLCEYSIAQIISVENIMLMYELSEAYNATTLKQSCILFILE--KFDKMRNKPWF 674 (704)
Q Consensus 621 l~~~c~~~l~~~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~--~~~~~~~~~~f 674 (704)
++..|...+...+...++...+..+..++...+...+..++.. +++.+....++
T Consensus 189 lk~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~l~~~~~~ 244 (297)
T KOG1987|consen 189 LKLACMPVLLSLIETLNVSQSLQEASNYDLKEAKSALTYVIAAGFKLDWLEKKLNE 244 (297)
T ss_pred HHHHHHHHHHHHHHhhhhcccHHHhchhHHHHHHHHHHHHHhccchHhHHHHHHHH
Confidence 9999999999989888888899999999999999999999987 77777654444
No 149
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.20 E-value=0.00064 Score=48.26 Aligned_cols=55 Identities=29% Similarity=0.372 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHc
Q 005282 333 SQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGL 387 (704)
Q Consensus 333 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l 387 (704)
+.+|..|+++|++++........-.....++.|+.+|.++++.||..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4689999999999988877766667778889999999999999999999999875
No 150
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.08 E-value=0.61 Score=51.54 Aligned_cols=161 Identities=12% Similarity=0.065 Sum_probs=117.6
Q ss_pred HHHHHHH-HHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCc
Q 005282 117 EVEKECA-FALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGI 195 (704)
Q Consensus 117 ~v~~~a~-~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i 195 (704)
..+..|+ .++..+..+.+.. ...+-+++.+.+.+. ++++-+-..|-+.+...|+..- -.+
T Consensus 34 ~~kidAmK~iIa~M~~G~dms------sLf~dViK~~~trd~--------ElKrL~ylYl~~yak~~P~~~l-----Lav 94 (757)
T COG5096 34 YKKIDAMKKIIAQMSLGEDMS------SLFPDVIKNVATRDV--------ELKRLLYLYLERYAKLKPELAL-----LAV 94 (757)
T ss_pred HHHHHHHHHHHHHHhcCCChH------HHHHHHHHHHHhcCH--------HHHHHHHHHHHHHhccCHHHHH-----HHH
Confidence 4455555 4667777444422 224555565553333 8888888888888876663211 235
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHH
Q 005282 196 PPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVIL 275 (704)
Q Consensus 196 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 275 (704)
..+.+=++++|+.+|..|++++..+-. ++... .+++.+.+++.++++.||+.|+-++.++-+-++. ...+
T Consensus 95 Nti~kDl~d~N~~iR~~AlR~ls~l~~--~el~~-----~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~---l~~~ 164 (757)
T COG5096 95 NTIQKDLQDPNEEIRGFALRTLSLLRV--KELLG-----NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKD---LYHE 164 (757)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHhcCh--HHHHH-----HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHh---hhhc
Confidence 677778889999999999999988853 22222 2478899999999999999999999999866543 4456
Q ss_pred cCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q 005282 276 AGALQPVIGLLSSSCSESKREAALLLGQFAA 306 (704)
Q Consensus 276 ~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~ 306 (704)
.|.+..+..++.+.++.+..+|..+|..+..
T Consensus 165 ~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 165 LGLIDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred ccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 7889999999999999999999999998853
No 151
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=97.07 E-value=0.11 Score=53.40 Aligned_cols=168 Identities=10% Similarity=0.098 Sum_probs=117.2
Q ss_pred HHHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhcc----C-------CCCC-------cc--------hhHHHHHHHH
Q 005282 121 ECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYK----N-------GGNS-------RA--------LSGVIRRAAD 173 (704)
Q Consensus 121 ~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~----~-------~~~~-------~~--------~~~~~~~a~~ 173 (704)
.|+.+|-.+. ..+..-..+.+.+|+..+++.+...- . .... .. ...++...+.
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lLk 82 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLLK 82 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHHH
Confidence 4677777777 66677778889999999988875421 0 0000 00 0144455555
Q ss_pred HHHHhhh---cChhhhhhhhc-cCCcHHHHHHhcCC---CHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc-
Q 005282 174 AITNLAH---ENANIKTRVRV-EDGIPPLVELLKFV---DVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR- 245 (704)
Q Consensus 174 ~L~~l~~---~~~~~~~~~~~-~~~i~~L~~ll~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~- 245 (704)
++..+.. .....-.-+.+ ...+..|..++++. .+.+...|+..+..+..+.|..-..+.+.|.++.+++.+.
T Consensus 83 ~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~ 162 (379)
T PF06025_consen 83 FLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITA 162 (379)
T ss_pred HHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhc
Confidence 5655554 11111122344 34455666667654 4788899999999999888888999999999999999887
Q ss_pred C---CCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCC
Q 005282 246 S---EDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSS 289 (704)
Q Consensus 246 ~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~ 289 (704)
. ++.++....-.+|+-||-+ ....+.+.+.+.++.+++++.++
T Consensus 163 ~~i~~s~e~l~~lP~~l~AicLN-~~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 163 KGILPSSEVLTSLPNVLSAICLN-NRGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred cCCCCcHHHHHHHHHHHhHHhcC-HHHHHHHHhcChHHHHHHHhCCH
Confidence 3 4678888888899999876 56667788889999999988764
No 152
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=97.06 E-value=0.045 Score=50.46 Aligned_cols=181 Identities=14% Similarity=0.151 Sum_probs=123.9
Q ss_pred HHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc--CChhhHHHHHHcCCc
Q 005282 68 AKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA--VKPEHQQIIVDTGAL 145 (704)
Q Consensus 68 ~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~--~~~~~~~~~~~~g~l 145 (704)
...++..|.-++++|+.+..+.++.+--.+-.+|..... ..+| +..|..+..+++.+. ++.+....+...+++
T Consensus 96 VcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~----~r~f-EyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIV 170 (293)
T KOG3036|consen 96 VCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSK----SRPF-EYLRLTSLGVIGALVKNDDQEVIRFLLTTEIV 170 (293)
T ss_pred HHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhcccc----CCch-HHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhH
Confidence 466677777778899999999999988888888877654 3333 379999999999999 666777888899999
Q ss_pred HHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhh------hhhc-cCCcH-HHHHHhcCCCHHHHHHHHHHH
Q 005282 146 PHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKT------RVRV-EDGIP-PLVELLKFVDVKVQRAAAGAL 217 (704)
Q Consensus 146 ~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~------~~~~-~~~i~-~L~~ll~~~~~~~~~~a~~~L 217 (704)
|..++.+...+. ..+..|..++..+..++....- .+.. ...+. .+.++.+.+++.+.++++++.
T Consensus 171 PlCLrime~GSe--------lSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcY 242 (293)
T KOG3036|consen 171 PLCLRIMESGSE--------LSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCY 242 (293)
T ss_pred HHHHHHHhcccH--------HHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 999999998875 6677788888877654433211 1111 11222 334555678999999999999
Q ss_pred HHhccCCchhhHHhHhc--CCh-H-HHHHhhcCCCHHHHHHHHHHHHHHh
Q 005282 218 RTLAFKNDENKKLIVEC--NAL-P-TLVLMLRSEDASVHFEAVGVIGNLV 263 (704)
Q Consensus 218 ~~l~~~~~~~~~~~~~~--~~i-~-~L~~lL~~~~~~v~~~a~~~L~~l~ 263 (704)
..|+. ++..+..+... +.+ . .+..++ .+|+..+.+-...+.|++
T Consensus 243 lrLsd-nprar~aL~~clPd~Lrd~tfs~~l-~~D~~~k~~l~~ll~~l~ 290 (293)
T KOG3036|consen 243 LRLSD-NPRARAALRSCLPDQLRDGTFSLLL-KDDPETKQWLQQLLKNLC 290 (293)
T ss_pred HHhcC-CHHHHHHHHhhCcchhccchHHHHH-hcChhHHHHHHHHHHHhc
Confidence 99995 77776665432 110 0 111122 345555666555555554
No 153
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=97.03 E-value=0.001 Score=54.45 Aligned_cols=50 Identities=20% Similarity=0.282 Sum_probs=44.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCChhhhccchhcHHHHHH
Q 005282 638 IMLMYELSEAYNATTLKQSCILFILEKFDKMRNKPWFFRLIRCVLPEIRN 687 (704)
Q Consensus 638 ~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~L~~~~~~~l~~ 687 (704)
|+.++.+|..|+++.|.+.|..|+.+||..+.++++|..||.+.+.++++
T Consensus 1 c~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~~~~~f~~L~~~~l~~iL~ 50 (101)
T smart00875 1 CLGIRRFAELYGLEELLEKALRFILKNFLEVAQSEEFLELSLEQLLSLLS 50 (101)
T ss_pred CHhHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCcHHhcCCHHHHHHHhC
Confidence 56788999999999999999999999999999999999999886666554
No 154
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.02 E-value=0.001 Score=47.21 Aligned_cols=55 Identities=38% Similarity=0.370 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHH
Q 005282 207 VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNL 262 (704)
Q Consensus 207 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l 262 (704)
|.+|..|+++|++++...+..... ....+++.|+.+|.++++.||..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 578999999999998644444333 4556899999999999999999999999875
No 155
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.00 E-value=0.0017 Score=42.62 Aligned_cols=39 Identities=44% Similarity=0.602 Sum_probs=35.8
Q ss_pred chhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 005282 225 DENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLV 263 (704)
Q Consensus 225 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 263 (704)
++++..+.+.|+++.|++++.++++.++..++++|.|++
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 347778889999999999999999999999999999996
No 156
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=96.99 E-value=0.042 Score=55.56 Aligned_cols=268 Identities=18% Similarity=0.186 Sum_probs=134.7
Q ss_pred hcCCCHHHHHHHHHHHHHhcc-----CCchhhHHhHhcCChHHHHH------hh-cCCCHHHHHHHHHHHHHHhcCChhh
Q 005282 202 LKFVDVKVQRAAAGALRTLAF-----KNDENKKLIVECNALPTLVL------ML-RSEDASVHFEAVGVIGNLVHSSPSI 269 (704)
Q Consensus 202 l~~~~~~~~~~a~~~L~~l~~-----~~~~~~~~~~~~~~i~~L~~------lL-~~~~~~v~~~a~~~L~~l~~~~~~~ 269 (704)
+...++.++.++..++..+.. ..|+..+.-...+.+..++- .. .+..+..+...|.++.++.......
T Consensus 304 ~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~ 383 (728)
T KOG4535|consen 304 MGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSN 383 (728)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcC
Confidence 336788999999998888754 22222222222222221111 00 0122345667777777776331110
Q ss_pred HHHHHHcCCHHHHHHHhc----CCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 005282 270 KKEVILAGALQPVIGLLS----SSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGR 345 (704)
Q Consensus 270 ~~~~~~~~~l~~L~~ll~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 345 (704)
. ..|--.....++. +.+.-++..|.+++.-+.-+.........-......+...+.+.....|..++|+++|
T Consensus 384 l----pn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~Kaawtlgn 459 (728)
T KOG4535|consen 384 L----PNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGN 459 (728)
T ss_pred C----CCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhh
Confidence 0 0111111222222 1222245566666655554332222223334456666667777778899999999999
Q ss_pred hhc----CCch-hhhHHhh-C-ChHHHHHhh---cCCChhHHHHHHHHHHHcccCCchhhHHHhhCCccccccccccccc
Q 005282 346 LAQ----DTHN-QAGIAQD-G-GILPLLKLL---DSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQP 415 (704)
Q Consensus 346 l~~----~~~~-~~~~~~~-~-~~~~L~~ll---~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~ 415 (704)
++. +.++ +..--.. | .+..+++.- ...+..|+.++..+|.|+.+ +++ ++.+
T Consensus 460 ITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQ-------vlq-----~i~~------- 520 (728)
T KOG4535|consen 460 ITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQ-------FLQ-----PIEK------- 520 (728)
T ss_pred hHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHH-------HHH-----Hhhh-------
Confidence 983 2222 1111111 1 122222222 22456799999999999853 111 0000
Q ss_pred chHHHHHHHHHHHHHhhcchhHHHHH-HHhhccHHHHHHHHHHHHhccCCCccc--eeeecCCcHHHHHHHHhh-cchhh
Q 005282 416 TKDCVARTLKRLEEKVHGRVLNHLLY-LLRVADRAVKRRVTLALAHLCAPDDCK--TIFIDNNGLELLLGLLES-TSVKQ 491 (704)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~--~~l~~~~~i~~L~~ll~~-~~~~~ 491 (704)
|.-..+ +.+. +..++. ........|+=++|.+++||-.++..+ ..-......+.|..++.+ .|-.+
T Consensus 521 ---~~~~e~------~~~~-~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKV 590 (728)
T KOG4535|consen 521 ---PTFAEI------IEES-IQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKV 590 (728)
T ss_pred ---ccHHHH------HHHH-HHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceE
Confidence 000000 0000 001111 112345678889999999996665432 221223456778888765 88899
Q ss_pred hhhHHHHHHHH
Q 005282 492 REESSVALYKL 502 (704)
Q Consensus 492 ~~~a~~~L~~L 502 (704)
|..|+.+|..-
T Consensus 591 Ri~AA~aL~vp 601 (728)
T KOG4535|consen 591 RIRAAAALSVP 601 (728)
T ss_pred eehhhhhhcCC
Confidence 99999888653
No 157
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.0094 Score=52.23 Aligned_cols=90 Identities=19% Similarity=0.245 Sum_probs=69.6
Q ss_pred cCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhcCccc----------------------
Q 005282 543 EGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVD---------------------- 600 (704)
Q Consensus 543 ~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~---------------------- 600 (704)
+|+.|.+-..+.. .|..++.++...--..+...|+++.++...|..+++|+|..+-.
T Consensus 13 DG~~f~ve~~~a~-~s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~~ 91 (162)
T KOG1724|consen 13 DGEIFEVEEEVAR-QSQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDAE 91 (162)
T ss_pred CCceeehhHHHHH-HhHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHHH
Confidence 7889999887766 78888888864322222258999999999999999999884321
Q ss_pred ---cChhhHHHHHHHHhhhChHhHHHHHHHHHHhhC
Q 005282 601 ---VSVDIAQDLLRAADQYLLEGLKRLCEYSIAQII 633 (704)
Q Consensus 601 ---~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~ 633 (704)
++..++++++.+|+|+.+++|.+.|.+.+...+
T Consensus 92 Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mi 127 (162)
T KOG1724|consen 92 FLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMI 127 (162)
T ss_pred HHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHH
Confidence 233578999999999999999999988776555
No 158
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=96.95 E-value=0.081 Score=53.12 Aligned_cols=201 Identities=14% Similarity=0.159 Sum_probs=143.0
Q ss_pred HHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhH-----HHHHHcCCcHHHHHHHhhccCCC
Q 005282 86 SLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQ-----QIIVDTGALPHLVSLLKQYKNGG 159 (704)
Q Consensus 86 ~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~-----~~~~~~g~l~~L~~lL~~~~~~~ 159 (704)
..+...|.+..|+..|..-+- +.+..++.+.+++. ...+.+ +.+. ...-..+..++.....
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~f----------EsrKdv~~if~~llr~~~~~~~~p~v~yl~-~~~peil~~L~~gy~~-- 136 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLDF----------ESRKDVAQIFSNLLRRQIGSRSPPTVDYLE-RHRPEILDILLRGYEN-- 136 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS-H----------HHHHHHHHHHHHHHT--BTTB--HHHHHHH-T--THHHHHHHHGGGS--
T ss_pred HHHHHhCHHHHHHHHhhhCCC----------cccccHHHHHHHHHhhccCCCCCchHHHHH-hCCHHHHHHHHHHhcC--
Confidence 556677889999999988754 89999999999998 433332 2222 2222333333444332
Q ss_pred CCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcC---C
Q 005282 160 NSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECN---A 236 (704)
Q Consensus 160 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~---~ 236 (704)
+++...+...|...+. .+.....+.....+..+.+..+.++=++..-|..++..+-..++.....+...+ +
T Consensus 137 -----~dial~~g~mlRec~k-~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~f 210 (335)
T PF08569_consen 137 -----PDIALNCGDMLRECIK-HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRF 210 (335)
T ss_dssp -----TTTHHHHHHHHHHHTT-SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHH
T ss_pred -----ccccchHHHHHHHHHh-hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 2666677777777775 566667788888899999999999999999999999997665565555555443 4
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHH----HHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q 005282 237 LPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKK----EVILAGALQPVIGLLSSSCSESKREAALLLGQFAA 306 (704)
Q Consensus 237 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~----~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~ 306 (704)
+.....+|.+++--+++.++..|+.+..+. .+.. .+.+..-+..++.+|++.+..++.+|..++--...
T Consensus 211 f~~~~~Ll~s~NYvtkrqslkLL~ellldr-~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVA 283 (335)
T PF08569_consen 211 FQKYNKLLESSNYVTKRQSLKLLGELLLDR-SNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVA 283 (335)
T ss_dssp HHHHHHHCT-SSHHHHHHHHHHHHHHHHSG-GGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCeEeehhhHHHHHHHHHch-hHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHh
Confidence 667788999999999999999999998663 3333 22345678899999999999999999988887765
No 159
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.94 E-value=0.005 Score=66.22 Aligned_cols=225 Identities=18% Similarity=0.149 Sum_probs=160.1
Q ss_pred ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHH-hhcCChhhHHHHHHcCCcHHHHHHHhhccCCC
Q 005282 81 NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALG-LLAVKPEHQQIIVDTGALPHLVSLLKQYKNGG 159 (704)
Q Consensus 81 ~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~-~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~ 159 (704)
...-+...++.|+...|+.+...... ..+..+..+|. .+. -+..+ ....++.+.+.+......
T Consensus 493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e----------~akl~~~~aL~~~i~-f~~~~----~~~v~~~~~s~~~~d~~~- 556 (748)
T KOG4151|consen 493 EKYERAKKIKPGGYEALLRLGQQQFE----------EAKLKWYHALAGKID-FPGER----SYEVVKPLDSALHNDEKG- 556 (748)
T ss_pred hHHhcCccccccHHHHHHHHHHHhch----------HHHHHHHHHHhhhcC-CCCCc----hhhhhhhhcchhhhhHHH-
Confidence 34445566788999999999888875 77778888887 333 22221 124556666666554321
Q ss_pred CCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHh-cCChH
Q 005282 160 NSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVE-CNALP 238 (704)
Q Consensus 160 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~ 238 (704)
--....+.++.||+..+...+..+.+..+++.+-.++..+++..+..++..+.||..+..-....+.+ ...++
T Consensus 557 ------~en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~ 630 (748)
T KOG4151|consen 557 ------LENFEALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLK 630 (748)
T ss_pred ------HHHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCch
Confidence 22345778899999888888888999999999888999999999999999999999844444444455 34567
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHH-HHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHh
Q 005282 239 TLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKK-EVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQ 317 (704)
Q Consensus 239 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 317 (704)
.....+...+......++.++..|+......+. ..........+..++.+.+.++++..+..+.|+.....+....+..
T Consensus 631 ~w~~~~e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~ 710 (748)
T KOG4151|consen 631 LWNLNLEVADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFE 710 (748)
T ss_pred HHHHHHHhhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhcc
Confidence 777777777778888888888877766565555 4445678888999999999999999998888866544444444544
Q ss_pred cCChHHHHHh
Q 005282 318 RGAVRPLIEM 327 (704)
Q Consensus 318 ~~~i~~L~~l 327 (704)
...++.+..+
T Consensus 711 ~~~~~~l~~~ 720 (748)
T KOG4151|consen 711 TEVMELLSGL 720 (748)
T ss_pred chHHHHHHHH
Confidence 5555554444
No 160
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.92 E-value=0.25 Score=53.16 Aligned_cols=233 Identities=18% Similarity=0.184 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhh
Q 005282 249 ASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEML 328 (704)
Q Consensus 249 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll 328 (704)
+..+...+..+...+..++..+ ...+..+..+|.+.++.++-+|+.+|-+++. ++.... . +...++.++
T Consensus 220 ~~LqlViVE~Irkv~~~~p~~~-----~~~i~~i~~lL~stssaV~fEaa~tlv~lS~-~p~alk-~----Aa~~~i~l~ 288 (948)
T KOG1058|consen 220 DSLQLVIVELIRKVCLANPAEK-----ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSN-DPTALK-A----AASTYIDLL 288 (948)
T ss_pred HHHHHHHHHHHHHHHhcCHHHh-----hHHHHHHHHHHhcCCchhhhhhcceEEEccC-CHHHHH-H----HHHHHHHHH
Confidence 4444444444444443333222 2345566666666666666666666665542 222111 1 122233333
Q ss_pred C-CCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCc--hhhHHHhhCCccc
Q 005282 329 Q-SPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNED--NVADLVRVGGVQK 405 (704)
Q Consensus 329 ~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~~~l~~~g~i~~ 405 (704)
- .++-.++-....-|..+.... . -+-.|.+-.+++.|.+.+-+++..++.....|+.+.+ ..-.+.+......
T Consensus 289 ~kesdnnvklIvldrl~~l~~~~---~-~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT 364 (948)
T KOG1058|consen 289 VKESDNNVKLIVLDRLSELKALH---E-KILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKT 364 (948)
T ss_pred HhccCcchhhhhHHHHHHHhhhh---H-HHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhc
Confidence 2 223333333333333333111 1 1123444557788899999999999998888875332 2222332222111
Q ss_pred ccccccccccchHHHHHHHHHHHH---HhhcchhHHHHHHHhhccHHHHHHHHHHHHhccC-CCccceeeecCCcHHHHH
Q 005282 406 LQDGEFTVQPTKDCVARTLKRLEE---KVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCA-PDDCKTIFIDNNGLELLL 481 (704)
Q Consensus 406 l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~l~~~~~i~~L~ 481 (704)
--........-.+.+...+..-+. .+...+++.++..+.+.++..-......+..... .+. ++...+..|+
T Consensus 365 ~~~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~-----Lr~~ii~~l~ 439 (948)
T KOG1058|consen 365 HNEESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPN-----LRASIIEKLL 439 (948)
T ss_pred cccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCch-----HHHHHHHHHH
Confidence 000000000001112222222221 2255678888888888876533322222222211 111 1223445555
Q ss_pred HHHhh-cchhhhhhHHHHHHH
Q 005282 482 GLLES-TSVKQREESSVALYK 501 (704)
Q Consensus 482 ~ll~~-~~~~~~~~a~~~L~~ 501 (704)
+-+.. ..+.+.+.|+|.++.
T Consensus 440 ~~~~~irS~ki~rgalwi~Ge 460 (948)
T KOG1058|consen 440 ETFPQIRSSKICRGALWILGE 460 (948)
T ss_pred HhhhhhcccccchhHHHHHHH
Confidence 44432 445555666665553
No 161
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.86 E-value=0.039 Score=48.00 Aligned_cols=131 Identities=12% Similarity=0.174 Sum_probs=102.3
Q ss_pred hHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCC--CHHHHHH
Q 005282 135 HQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFV--DVKVQRA 212 (704)
Q Consensus 135 ~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~ 212 (704)
+...++..||+..|++++.+.....+. ..+...+++.++..|..++--..+ .....++..++.+.+.. ++.+...
T Consensus 3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~--~~~~La~~L~af~eLMeHg~vsWd-~l~~~FI~Kia~~Vn~~~~d~~i~q~ 79 (160)
T PF11841_consen 3 FAQEFISRDGLTLLIKMIEEGTEIQPC--KGEILAYALTAFVELMEHGIVSWD-TLSDSFIKKIASYVNSSAMDASILQR 79 (160)
T ss_pred hHHHHHhccCHHHHHHHHHcCCccCcc--hHHHHHHHHHHHHHHHhcCcCchh-hccHHHHHHHHHHHccccccchHHHH
Confidence 456789999999999999987742111 127888999999999875443333 56667788888888843 6899999
Q ss_pred HHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh
Q 005282 213 AAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPS 268 (704)
Q Consensus 213 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 268 (704)
++..|-++...++.....+.+.=.++.|+..|+.++++++..++..+..+....++
T Consensus 80 sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 80 SLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence 99999999986666666666666799999999999999999999999888765443
No 162
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=96.86 E-value=0.027 Score=56.50 Aligned_cols=208 Identities=13% Similarity=0.157 Sum_probs=151.6
Q ss_pred hhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhH-----HhHh--cCChHHHHHhhcCCCHHHHHHHHHHHHH
Q 005282 189 VRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKK-----LIVE--CNALPTLVLMLRSEDASVHFEAVGVIGN 261 (704)
Q Consensus 189 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~-----~~~~--~~~i~~L~~lL~~~~~~v~~~a~~~L~~ 261 (704)
+...+.+..|+..|..-+-+.++.+..+..++.......+. .+.. ..++..|+..- +++++...+...|..
T Consensus 72 i~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~mlRe 149 (335)
T PF08569_consen 72 IYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGDMLRE 149 (335)
T ss_dssp HHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHHHHHH
Confidence 44557788899999988999999999999999764443322 2322 22344444333 456677777778888
Q ss_pred HhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhc---CChHHHHHhhCCCCHHHHHH
Q 005282 262 LVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQR---GAVRPLIEMLQSPDSQLKEM 338 (704)
Q Consensus 262 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~---~~i~~L~~ll~~~~~~v~~~ 338 (704)
++.. +...+.+.....+..+...+..++-++...|..++..+...++......+.. ..+.....++.+++.-++..
T Consensus 150 c~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrq 228 (335)
T PF08569_consen 150 CIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQ 228 (335)
T ss_dssp HTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHH
T ss_pred HHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehh
Confidence 8766 6667777778888889999999999999999999998776666555555544 45678888899999999999
Q ss_pred HHHHHHHhhcCCchhhhH----HhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHHHh
Q 005282 339 SAFALGRLAQDTHNQAGI----AQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVR 399 (704)
Q Consensus 339 a~~~L~~l~~~~~~~~~~----~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~ 399 (704)
++..|+.+.....+...+ ....-+..++.+|.+.+..+|..|..+..-+..+|..-+.+.+
T Consensus 229 slkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~ 293 (335)
T PF08569_consen 229 SLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVD 293 (335)
T ss_dssp HHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHH
T ss_pred hHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHH
Confidence 999999999888776543 2335577788999999999999999999999988776655543
No 163
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.80 E-value=0.0026 Score=41.75 Aligned_cols=37 Identities=46% Similarity=0.499 Sum_probs=34.4
Q ss_pred hhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 005282 185 IKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLA 221 (704)
Q Consensus 185 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 221 (704)
.+..+.+.|+++.|++++.++++.++..++++|+|++
T Consensus 4 ~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 4 QKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5667889999999999999999999999999999997
No 164
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.77 E-value=0.14 Score=52.38 Aligned_cols=140 Identities=19% Similarity=0.180 Sum_probs=86.1
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHH-HHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHH
Q 005282 245 RSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVI-GLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRP 323 (704)
Q Consensus 245 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~-~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 323 (704)
.+++..++..|++.|+|.+...|......... .+..++ .+....+.++..++..+|..+...-......-+=-++.-.
T Consensus 268 ~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialr 346 (533)
T KOG2032|consen 268 TDPSAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALR 346 (533)
T ss_pred cCchhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHH
Confidence 36788999999999999998755544333332 334444 4555667888999998888776321111111111244556
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhcCCc--hhhhHHh--hCChHHHHHhhcCCChhHHHHHHHHHH
Q 005282 324 LIEMLQSPDSQLKEMSAFALGRLAQDTH--NQAGIAQ--DGGILPLLKLLDSKNGSLQHNAAFALY 385 (704)
Q Consensus 324 L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~--~~~~~~L~~ll~~~~~~v~~~a~~~L~ 385 (704)
+..+..+.+++++..+....+.|+.... .+..+.+ .+...+++-.+.+.++.+-.++-..+.
T Consensus 347 lR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~ 412 (533)
T KOG2032|consen 347 LRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELR 412 (533)
T ss_pred HHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHH
Confidence 7777888999999999999988885432 2233332 234445555566677766544444443
No 165
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=96.76 E-value=0.002 Score=62.29 Aligned_cols=87 Identities=15% Similarity=0.265 Sum_probs=74.2
Q ss_pred eEeehhHHHHhhcCHHHHHhhcC---CCCCCCCCceEcC-CCCHHHHHHHHHHHhcCccccChhhHHHHHHHHhhhChHh
Q 005282 545 KQFYAHRICLLASSDAFRAMFDG---GYKEKNAKDVEIP-NIRWNVFELMMRFIYTGNVDVSVDIAQDLLRAADQYLLEG 620 (704)
Q Consensus 545 ~~~~~hk~iL~~~s~~f~~~f~~---~~~e~~~~~i~l~-~~~~~~~~~~l~~~Y~~~~~~~~~~~~~ll~~A~~~~~~~ 620 (704)
+.|.|.+.+|...=.||+..+.. +..+ ..+|++. .-+...|+=+++|++.....++++++..++.-|++++|++
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~--~~~idisVhCDv~iF~WLm~yv~~~~p~l~~~NvvsIliSS~FL~M~~ 91 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQR--WEEIDISVHCDVHIFEWLMRYVKGEPPSLTPSNVVSILISSEFLQMES 91 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCc--CCCcceEEecChhHHHHHHHHhhcCCCcCCcCcEEEeEehhhhhccHH
Confidence 68999999999999999999965 2222 2345554 5778899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhC
Q 005282 621 LKRLCEYSIAQII 633 (704)
Q Consensus 621 l~~~c~~~l~~~~ 633 (704)
|.+.|..|+..++
T Consensus 92 Lve~cl~y~~~~~ 104 (317)
T PF11822_consen 92 LVEECLQYCHDHM 104 (317)
T ss_pred HHHHHHHHHHHhH
Confidence 9999999986644
No 166
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.75 E-value=0.43 Score=50.36 Aligned_cols=339 Identities=18% Similarity=0.137 Sum_probs=181.4
Q ss_pred HHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhh-----HHHH
Q 005282 66 AAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEH-----QQII 139 (704)
Q Consensus 66 ~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~-----~~~~ 139 (704)
......+.+|..++.++...+.+.. .++..+-...+.... .+....++.+|.++. ...+. ....
T Consensus 17 ~~~~~~L~~l~~ls~~~~i~~~~~~-~ll~kl~~~~~~~~~---------~~~~~~il~tl~~~~~~~~~~~~~~~~~~y 86 (415)
T PF12460_consen 17 SNYERILEALAALSTSPQILETLSI-RLLNKLSIVCQSESS---------SDYCHAILSTLQSLLEKKQEDKQFEDNSWY 86 (415)
T ss_pred hHHHHHHHHHHHHHCChhHHHHHHH-HHHHHHHHHhcCCCC---------hHHHHHHHHHHHHHHHhcccccccchHHHH
Confidence 4567788999999988777666633 444444444443322 356667777777776 22222 2334
Q ss_pred HHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc----------C-----
Q 005282 140 VDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLK----------F----- 204 (704)
Q Consensus 140 ~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~----------~----- 204 (704)
.+...++.+.+........... .++.+...+...+..+...-+..+..-. +..+..+.- .
T Consensus 87 ~~~~lv~~l~~~~~~~~~~~~~-~~~~~L~~~~~l~~~iv~~l~~~~q~~~----~~~~~~lf~~~~~~~~~~~~~~~~~ 161 (415)
T PF12460_consen 87 FHRILVPRLFELALQASDQSSD-LDDRVLELLSRLINLIVRSLSPEKQQEI----LDELYSLFLSPKSFSPFQPSSSTIS 161 (415)
T ss_pred HHhHHHHHHHHHHHhhcccccc-cchHHHHHHHHHHHHHHHhCCHHHHHHH----HHHHHHHHccccccCCCCccccccc
Confidence 4445788888877665433322 1236666666666666643333222111 223333222 1
Q ss_pred -CCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHH
Q 005282 205 -VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR-SEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPV 282 (704)
Q Consensus 205 -~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L 282 (704)
.......-...++..+-.+..-. .....+..++.+.. ..++..+..++.+++.++-.-+. .. .-.+++..+
T Consensus 162 ~~~~~~~~l~~~il~~l~~~~~~~----~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~--~~-~l~~~l~~~ 234 (415)
T PF12460_consen 162 EQQSRLVILFSAILCSLRKDVSLP----DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPD--DD-DLDEFLDSL 234 (415)
T ss_pred cccccHHHHHHHHHHcCCcccCcc----CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCC--hh-hHHHHHHHH
Confidence 11122222233333332211100 11124566666654 45688889999999888733111 11 111233333
Q ss_pred HHHh-cCCChhHHHHHH----HHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCc------
Q 005282 283 IGLL-SSSCSESKREAA----LLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTH------ 351 (704)
Q Consensus 283 ~~ll-~~~~~~~~~~a~----~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~------ 351 (704)
..-+ ...+...+..+. |....+...+.... ...+..|+.++.+ +++...++.++.-+....+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~-----~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~ 307 (415)
T PF12460_consen 235 LQSISSSEDSELRPQALEILIWITKALVMRGHPLA-----TELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKE 307 (415)
T ss_pred HhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH-----HHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCcc
Confidence 3333 222333333333 33333332222211 1246677777766 6677888899988886621
Q ss_pred ---hhhhHHhhC----ChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHH
Q 005282 352 ---NQAGIAQDG----GILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTL 424 (704)
Q Consensus 352 ---~~~~~~~~~----~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~ 424 (704)
+-..+.+.. .++.+++-.+..+.+.+.....+|.++..+-...-.+-+
T Consensus 308 ~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~------------------------- 362 (415)
T PF12460_consen 308 NHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPE------------------------- 362 (415)
T ss_pred ccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHH-------------------------
Confidence 112233333 345566666666666788888888888653221111111
Q ss_pred HHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCC
Q 005282 425 KRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPD 465 (704)
Q Consensus 425 ~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 465 (704)
.+.++|.+++-+..++++++..+..+|..+..+.
T Consensus 363 -------l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 363 -------LPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred -------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 1236777888888899999999999998885544
No 167
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=96.73 E-value=0.0055 Score=59.48 Aligned_cols=100 Identities=19% Similarity=0.205 Sum_probs=72.5
Q ss_pred chHHhhhcCCC--cccEEEEE-cCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhcCccc
Q 005282 524 YLGEQFVNNPT--LSDVTFVV-EGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVD 600 (704)
Q Consensus 524 ~l~~~~~~~~~--~~d~~~~~-~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~ 600 (704)
++...+.+... ..|+.+.. +|..|.|||..|+++|++|..-+..-|..+ .+|.-..+-+..|..|++|+|-..-.
T Consensus 136 hi~s~l~dt~l~~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~~~--heI~~~~v~~~~f~~flk~lyl~~na 213 (516)
T KOG0511|consen 136 HIQSSLRDTFLGCCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYVQG--HEIEAHRVILSAFSPFLKQLYLNTNA 213 (516)
T ss_pred HHHHHhhccccccccchHHHhhccccccHHHHHHHhhhcccCchhhhhcccc--CchhhhhhhHhhhhHHHHHHHHhhhh
Confidence 34444444443 34666665 688899999999999999987666544322 35555567789999999999987444
Q ss_pred cChhhHHHHHHHHhhhChHhHHHHH
Q 005282 601 VSVDIAQDLLRAADQYLLEGLKRLC 625 (704)
Q Consensus 601 ~~~~~~~~ll~~A~~~~~~~l~~~c 625 (704)
.-.+....++.+..+|+.+.+....
T Consensus 214 ~~~~qynallsi~~kF~~e~l~~~~ 238 (516)
T KOG0511|consen 214 EWKDQYNALLSIEVKFSKEKLSLEI 238 (516)
T ss_pred hhhhHHHHHHhhhhhccHHHhHHHH
Confidence 4556668999999999988776554
No 168
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.72 E-value=0.014 Score=54.95 Aligned_cols=179 Identities=16% Similarity=0.160 Sum_probs=117.9
Q ss_pred HHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc--CChhhHHHHHHcCCc
Q 005282 68 AKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA--VKPEHQQIIVDTGAL 145 (704)
Q Consensus 68 ~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~--~~~~~~~~~~~~g~l 145 (704)
...|+..|..++.+|+.+..++++.+.-.|..+|...+. ..+| +.+|..+.++++.+. ++++....+.+.+.+
T Consensus 67 VcnaLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k----~r~~-E~LRLtsLGVIgaLvK~d~~evi~fLl~tEii 141 (262)
T PF04078_consen 67 VCNALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSK----TRPF-EYLRLTSLGVIGALVKTDDPEVISFLLQTEII 141 (262)
T ss_dssp HHHHHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH--------SHHH-HHHHHHHHHHHHHHHTT--HHHHHHHHCTTHH
T ss_pred HHHHHHHHHHHHcChHHHHHHHHcCchhhehhhhhcccc----cccc-chhhHhHHHHHHHHHcCCcHHHHHHHHhhchH
Confidence 456666677778899999999999999999999987764 2222 378999999999999 577888899999999
Q ss_pred HHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhh------h-hccCCcHHHH-HHhcCCCHHHHHHHHHHH
Q 005282 146 PHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTR------V-RVEDGIPPLV-ELLKFVDVKVQRAAAGAL 217 (704)
Q Consensus 146 ~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~------~-~~~~~i~~L~-~ll~~~~~~~~~~a~~~L 217 (704)
|..++.+...+. -.+..|..++..+..++...... + .-..++..++ .+.+.+++.+.++.+++-
T Consensus 142 plcLr~me~Gse--------lSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCY 213 (262)
T PF04078_consen 142 PLCLRIMEFGSE--------LSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCY 213 (262)
T ss_dssp HHHHHHHHHS-H--------HHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHH
T ss_pred HHHHHHHHhccH--------HHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHH
Confidence 999999998764 55667777777776533222111 1 1112233333 344578999999999999
Q ss_pred HHhccCCchhhHHhHhcCChHHHHH-----hhcCCCHHHHHHHHHHHHHH
Q 005282 218 RTLAFKNDENKKLIVECNALPTLVL-----MLRSEDASVHFEAVGVIGNL 262 (704)
Q Consensus 218 ~~l~~~~~~~~~~~~~~~~i~~L~~-----lL~~~~~~v~~~a~~~L~~l 262 (704)
..|+. ++..++.+... +|..++ -+-.+|+.++.+--..+.|+
T Consensus 214 lRLsd-nprar~aL~~~--LP~~Lrd~~f~~~l~~D~~~k~~l~qLl~nl 260 (262)
T PF04078_consen 214 LRLSD-NPRAREALRQC--LPDQLRDGTFSNILKDDPSTKRWLQQLLSNL 260 (262)
T ss_dssp HHHTT-STTHHHHHHHH--S-GGGTSSTTTTGGCS-HHHHHHHHHHHHHT
T ss_pred HHHcc-CHHHHHHHHHh--CcHHHhcHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 99995 78777776542 222111 11134777888777777766
No 169
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=96.70 E-value=0.0087 Score=43.44 Aligned_cols=56 Identities=18% Similarity=0.365 Sum_probs=45.3
Q ss_pred EEEEE-cCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhc
Q 005282 538 VTFVV-EGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYT 596 (704)
Q Consensus 538 ~~~~~-~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~ 596 (704)
+.++. ||..|.+.+.+.. .|..++.|+.+...+.. .|++++++...++.+++|++.
T Consensus 3 v~L~SsDg~~f~V~~~~a~-~S~~i~~ml~~~~~~~~--~Ipl~~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAAK-QSKTIKNMLEDLGDEDE--PIPLPNVSSRILKKVIEWCEH 59 (62)
T ss_dssp EEEEETTSEEEEEEHHHHT-TSHHHHHHHHCTCCCGT--EEEETTS-HHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHHH-HhHHHHHHHhhhccccc--ccccCccCHHHHHHHHHHHHh
Confidence 44554 7899999998887 89999999986444333 799999999999999999974
No 170
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=96.70 E-value=0.11 Score=53.36 Aligned_cols=289 Identities=15% Similarity=0.117 Sum_probs=158.5
Q ss_pred hhhHHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHH
Q 005282 39 TQQDLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEV 118 (704)
Q Consensus 39 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v 118 (704)
+++++.+.+..+++-|.. ......++.++--|.....++.++..+...|.++.++..+..... |+ +
T Consensus 15 en~rf~Dev~ylld~l~~-----~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~--------d~-~ 80 (361)
T PF07814_consen 15 ENQRFADEVEYLLDGLES-----SSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPD--------DD-I 80 (361)
T ss_pred hhhhHHHHHHHHHhhccc-----CCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccc--------hH-H
Confidence 467788888888887752 233456888888888888899999999999999999999977664 22 4
Q ss_pred HHHHHHH-HHhhcCChhhHHHHHHcCCcHHHHHHHh--hccCCCCCcc--hhHHHHHHHHHHHHhhhcChhhhhhhhccC
Q 005282 119 EKECAFA-LGLLAVKPEHQQIIVDTGALPHLVSLLK--QYKNGGNSRA--LSGVIRRAADAITNLAHENANIKTRVRVED 193 (704)
Q Consensus 119 ~~~a~~~-L~~l~~~~~~~~~~~~~g~l~~L~~lL~--~~~~~~~~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 193 (704)
...++.+ +.-++.+...-..+.+.+....++.++. ...+.....+ ...-.......+...+... ...+
T Consensus 81 ~~l~~a~i~~~l~~d~~~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~-------~~~~ 153 (361)
T PF07814_consen 81 LALATAAILYVLSRDGLNMHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKEL-------LSSG 153 (361)
T ss_pred HHHHHHHHHHHHccCCcchhhhhchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHH-------Hhcc
Confidence 4444444 4444455444455556667777788888 2111000000 0011111111122211100 0000
Q ss_pred CcHHHHHHhcCCCHHHHHHHHHHHHHhc--------------cCCchhhHHhHhcCChHHHHHhhcC----C--------
Q 005282 194 GIPPLVELLKFVDVKVQRAAAGALRTLA--------------FKNDENKKLIVECNALPTLVLMLRS----E-------- 247 (704)
Q Consensus 194 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~--------------~~~~~~~~~~~~~~~i~~L~~lL~~----~-------- 247 (704)
... .--......-+..|+.++..++ ...+..++.+...|++..++..+.+ .
T Consensus 154 ~~~---~~~~~~~lsp~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~ 230 (361)
T PF07814_consen 154 SSW---KSPKPPELSPQTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDD 230 (361)
T ss_pred ccc---cccCCcccccccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccc
Confidence 000 0000111223334444444442 1112345667777888888888751 1
Q ss_pred ----CHHHHHHHHHHHHHHhcCChhhHHHHHHc--CCHHHHH-HHhcC---CChhHHHHHHHHHHHHhccCCcchHHHHh
Q 005282 248 ----DASVHFEAVGVIGNLVHSSPSIKKEVILA--GALQPVI-GLLSS---SCSESKREAALLLGQFAAADSNSKVHIVQ 317 (704)
Q Consensus 248 ----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~l~~L~-~ll~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 317 (704)
+......++++|-+.+..++.....+... +.+..+. .++.. ........+++.+.|++.+++.....+..
T Consensus 231 ~~~~~l~~l~~cl~ILEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s 310 (361)
T PF07814_consen 231 PSLQSLIDLERCLSILESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFAS 310 (361)
T ss_pred cchHHHHHHHHHHHHHHHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhh
Confidence 12355678889988887766666655542 3333333 33322 22334567888999998777666666555
Q ss_pred cCChHHHHHhh-------C-------CCCHHHHHHHHHHHHHhhcCCc
Q 005282 318 RGAVRPLIEML-------Q-------SPDSQLKEMSAFALGRLAQDTH 351 (704)
Q Consensus 318 ~~~i~~L~~ll-------~-------~~~~~v~~~a~~~L~~l~~~~~ 351 (704)
.++...+..+. . ....+...-++.+|.|++.+.+
T Consensus 311 ~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~D~~IL~Lg~LINL~E~s~ 358 (361)
T PF07814_consen 311 PKLGQQLGLIVTSFFCVLSLPNYVPEESSFDILILALGLLINLVEHSE 358 (361)
T ss_pred hHhccchHHHHHhhcccccccccccccccchHHHHHHHhHHHheeeCc
Confidence 43332222111 1 1124667778888888887654
No 171
>PRK14707 hypothetical protein; Provisional
Probab=96.65 E-value=1.3 Score=53.66 Aligned_cols=413 Identities=16% Similarity=0.147 Sum_probs=206.3
Q ss_pred HHHHHHHHHHHH-hhcChhHHHHHHhCCChHHHHhhcc-CCCcCCCCCCCCchHHHHHHHHHH-HhhcCChhhHHHHHHc
Q 005282 66 AAAKTASHALVE-FAKNEEIVSLIVDNGAVPALVEHLQ-TPPQLTNAQIPYEHEVEKECAFAL-GLLAVKPEHQQIIVDT 142 (704)
Q Consensus 66 ~~~~~a~~~L~~-l~~~~~~~~~l~~~g~i~~L~~lL~-~~~~~~~~~~~~d~~v~~~a~~~L-~~l~~~~~~~~~~~~~ 142 (704)
.++..|...|.. +..+++.++.+ +.-.+...+..|. -++. .+...|+..| ..++.+++.+..+- .
T Consensus 305 ~vc~~Aa~~la~rl~~d~~l~~~~-~~~~~~~~LNalsKWpd~----------~~C~~Aa~~LA~rl~~d~~l~~~l~-~ 372 (2710)
T PRK14707 305 PVCAEAAIALAERLADDPELCKAL-NARGLSTALNALSKWPDN----------PVCAAAVSALAERLVADPELRKDLE-P 372 (2710)
T ss_pred hHHHHHHHHHHHHHhccHhhhhcc-chHHHHHHHHHhhcCCCc----------hhHHHHHHHHHHHhccCHhhhcccc-h
Confidence 344555554444 55577777665 3333444444444 4433 4444454444 45558888777665 3
Q ss_pred CCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhcc
Q 005282 143 GALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAF 222 (704)
Q Consensus 143 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 222 (704)
-++..+++.+++..++ .....++..|..-..++++.+..+-..|+-..|-.+-+-++..+...+...|..-..
T Consensus 373 q~~a~~lNalsKWp~~-------~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la 445 (2710)
T PRK14707 373 QGVSSVLNALSKWPDT-------PVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLA 445 (2710)
T ss_pred hHHHHHHhhhhcCCCc-------hHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHh
Confidence 4567777888887653 667777777777666788888877777777777777777777777777777766555
Q ss_pred CCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHH-HHHHHH
Q 005282 223 KNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKR-EAALLL 301 (704)
Q Consensus 223 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~-~a~~~L 301 (704)
++.+.++.+--.++...|-.+-+=+|..+...++..|..=...++...+.+--.++...|-.+-+-++...-. .+.+.-
T Consensus 446 ~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA 525 (2710)
T PRK14707 446 HDTELCKALDPINVTQALDALSKWPDTPICGQTASALAARLAHERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALA 525 (2710)
T ss_pred ccHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Confidence 5667666655444444443333446666666666666554444455555444444444444444444444333 333333
Q ss_pred HHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhc-CCChhHHHHH
Q 005282 302 GQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLD-SKNGSLQHNA 380 (704)
Q Consensus 302 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a 380 (704)
+.+.. .......+...++...+-.+-+.++...-+.+...|..+.........-.....+..+++-|+ -.+......+
T Consensus 526 ~rl~~-~~~l~~~~~~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~~~~L~aq~Vs~llNaLSKWP~~~aC~~A 604 (2710)
T PRK14707 526 ERVVD-ELQLRKAFDAHQVVNTLKALSKWPDKQLCAVAASGLAERLADEPQLPKDLHRQGVVIVLNALSKWPDTAVCAEA 604 (2710)
T ss_pred HHhcc-chhhhhhhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhcchhhHHhhhhhHHHHHHHhhccCCCcHHHHHH
Confidence 33331 222222223333333444444555555445555566555433333333333445556666653 3444444444
Q ss_pred HHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHH----------HHhhcchhHHHHHHH-hhccHH
Q 005282 381 AFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLE----------EKVHGRVLNHLLYLL-RVADRA 449 (704)
Q Consensus 381 ~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~L~~ll-~~~~~~ 449 (704)
+..|......+.....-.....+..+++...+......|.. ....+. ..+...-+.-+++-+ +-.+.+
T Consensus 605 a~~LA~~l~~~~~lr~~l~~q~lan~lNALSKWP~s~~C~~-Aa~rLA~rl~~~~~l~~~fnaQ~vAn~LNALSKWPe~e 683 (2710)
T PRK14707 605 VNALAERLVDEPDLRKELDPVDVTNVLNALSKWPGTEVCAE-VARLLAGRLVGDRLLRKTFNSLDVANALNALSKWPDTP 683 (2710)
T ss_pred HHHHHHHhccChhhhhhccHHHHHHHHhhhhcCCCchHHHH-HHHHHHHHhhhchhhHhhcchHHHHHHHHhhhcCCCch
Confidence 44444333333332111222223333333333333323311 111111 111111122223333 334555
Q ss_pred HHHHHHHHHH-hccCCCccceeeecCCcHHHHHHHHhh-cchhhhhhHHHHHH
Q 005282 450 VKRRVTLALA-HLCAPDDCKTIFIDNNGLELLLGLLES-TSVKQREESSVALY 500 (704)
Q Consensus 450 v~~~a~~~L~-~l~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~ 500 (704)
....|+..|. .|+.++.-+..+ ..-++..++.-+.. +.......|+..|.
T Consensus 684 ~Cr~Aa~~LA~rLa~~~~Lr~al-~pQ~vAN~LNALSKWP~~~~Cr~AA~~LA 735 (2710)
T PRK14707 684 VCAAAAGGMAERLAADPGLRKEL-NPVDVANALNALSKWPRTPVCAAVASALA 735 (2710)
T ss_pred HHHHHHHHHHHHHhcChhhHhhc-CHHHHHHHHhhhhcCCCcHHHHHHHHHHH
Confidence 5555555554 446666555543 44566666666654 33333344444333
No 172
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.65 E-value=0.36 Score=54.14 Aligned_cols=199 Identities=16% Similarity=0.210 Sum_probs=121.7
Q ss_pred HHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchh
Q 005282 86 SLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALS 165 (704)
Q Consensus 86 ~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~ 165 (704)
..+.+.|++..++.++..-.. ..-+.+.....+.+|..++.-+.+|+.+++.|+++.|+..+...-.........
T Consensus 111 ~v~~~~gGL~~ll~~l~~~~~-----~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~ 185 (802)
T PF13764_consen 111 SVLAECGGLEVLLSRLDSIRD-----FSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQA 185 (802)
T ss_pred HHhhcCCCHHHHHHHHHhhcc-----ccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccc
Confidence 445578999999999888543 001235667778888888888999999999999999999996433221111112
Q ss_pred HHHHHHHHHHHHhhhcChhh----hhhhhcc--------CCcHHHHHHhcC----CCHHHHHHHHHHHHHhccCCchhhH
Q 005282 166 GVIRRAADAITNLAHENANI----KTRVRVE--------DGIPPLVELLKF----VDVKVQRAAAGALRTLAFKNDENKK 229 (704)
Q Consensus 166 ~~~~~a~~~L~~l~~~~~~~----~~~~~~~--------~~i~~L~~ll~~----~~~~~~~~a~~~L~~l~~~~~~~~~ 229 (704)
++.+..+.++-.+..+.... ....... .-+..+++.+.+ .++.+....+++|-.|+.++++.-+
T Consensus 186 ~i~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~ 265 (802)
T PF13764_consen 186 EIAEQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMD 265 (802)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHH
Confidence 56666666666554321110 0011111 126667776664 4689999999999999998877777
Q ss_pred HhHhcCChHHHHHhhc--CCCHHHHHHHHHHHHHHhcCC------hhhHHHHHHcCCHHHHHHHhcCCCh
Q 005282 230 LIVECNALPTLVLMLR--SEDASVHFEAVGVIGNLVHSS------PSIKKEVILAGALQPVIGLLSSSCS 291 (704)
Q Consensus 230 ~~~~~~~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~------~~~~~~~~~~~~l~~L~~ll~~~~~ 291 (704)
.+++. +...+++=. .....--...+.+++.++.+- ...++.+++.|++...+.+|...-+
T Consensus 266 ~Lv~~--F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P 333 (802)
T PF13764_consen 266 ALVEH--FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFP 333 (802)
T ss_pred HHHHH--HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCc
Confidence 66654 222222211 111111123355666665432 2456777788888888877765434
No 173
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.64 E-value=0.21 Score=54.45 Aligned_cols=346 Identities=14% Similarity=0.146 Sum_probs=181.9
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhh------hhh
Q 005282 117 EVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKT------RVR 190 (704)
Q Consensus 117 ~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~------~~~ 190 (704)
-+.-.++..|+.|+-...+...+++.|++..|+..=+-+. .......+|+.+.. +...-+ ..+
T Consensus 368 ~l~~~~~k~~~~l~~h~kfa~~fv~~~gi~kll~vpr~s~----------~~~g~s~cly~~~~-~q~~mervc~~p~~v 436 (1516)
T KOG1832|consen 368 PLLPDVMKLICALAAHRKFAAMFVERRGILKLLAVPRVSE----------TFYGLSSCLYTIGS-LQGIMERVCALPLVV 436 (1516)
T ss_pred cccHHHHHHHHHHHHhhHHHHHHHHhhhhHHHhcCCCchh----------hhhhHHHHHHHHhh-hhhHHHHHhhccHHH
Confidence 3555788888899977788889999999888776544322 12222334444432 111111 122
Q ss_pred ccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcC--------CC-----------HHH
Q 005282 191 VEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRS--------ED-----------ASV 251 (704)
Q Consensus 191 ~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~--------~~-----------~~v 251 (704)
-..++..-+.++..+...-+.++...+...-. ....-+.+-...+++.|+.++++ .+ ...
T Consensus 437 ~~~vv~~~~~l~~cs~~~~~~~~~~ff~~~f~-frail~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~ 515 (1516)
T KOG1832|consen 437 IHQVVKLAIELLDCSQDQARKNSALFFAAAFV-FRAILDAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQM 515 (1516)
T ss_pred HHHHHHHHHHHHhcchhhccchHHHHHHHHHH-HHHHHHHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhh
Confidence 33445555666664433333333222221110 11112223334455666655541 11 122
Q ss_pred HHHHHHHHHHHhcCC-----hhhHHHHHHcCCHHHHHHHhcCCC------hhHHHHHHHHHHHHhccCC-------cchH
Q 005282 252 HFEAVGVIGNLVHSS-----PSIKKEVILAGALQPVIGLLSSSC------SESKREAALLLGQFAAADS-------NSKV 313 (704)
Q Consensus 252 ~~~a~~~L~~l~~~~-----~~~~~~~~~~~~l~~L~~ll~~~~------~~~~~~a~~~L~~l~~~~~-------~~~~ 313 (704)
-...|.+|..-.... +..+..-+..+.....+.-+..+. ....+..++-+..+....+ ....
T Consensus 516 ~~htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~ae 595 (1516)
T KOG1832|consen 516 AFHTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAE 595 (1516)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHH
Confidence 334555554433221 222333334445555554443221 1223333443333322222 2233
Q ss_pred HHHhcCChHHHHHhhCC--------CCHHHHHHHHHHHHHhhcCCchhhhHHhh--------CChHHHHHhhc----CCC
Q 005282 314 HIVQRGAVRPLIEMLQS--------PDSQLKEMSAFALGRLAQDTHNQAGIAQD--------GGILPLLKLLD----SKN 373 (704)
Q Consensus 314 ~~~~~~~i~~L~~ll~~--------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--------~~~~~L~~ll~----~~~ 373 (704)
.+.+.+.+..++.+..- +..++...|+.+|+-+..-+..+..+... .|+..++..-. ..+
T Consensus 596 nflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~D 675 (1516)
T KOG1832|consen 596 NFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVD 675 (1516)
T ss_pred HHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccC
Confidence 45666777777777653 23467778888888888888877665432 24444444332 238
Q ss_pred hhHHHHHHHHHHHcccCC-chhhHHHhhCCcccc-cccccccccchHHHHHHHHHHHHHh-hcchhHHHHHHHhhcc---
Q 005282 374 GSLQHNAAFALYGLADNE-DNVADLVRVGGVQKL-QDGEFTVQPTKDCVARTLKRLEEKV-HGRVLNHLLYLLRVAD--- 447 (704)
Q Consensus 374 ~~v~~~a~~~L~~l~~~~-~~~~~l~~~g~i~~l-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~ll~~~~--- 447 (704)
++++..|+.++.|+...| +++......=+-+.= .+.-...++...-+-..+.+..+.+ ..+-+..|+.++.-..
T Consensus 676 pei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t 755 (1516)
T KOG1832|consen 676 PEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPT 755 (1516)
T ss_pred HHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCC
Confidence 999999999999999855 666544332111000 0000011112223344555555555 3356788888887654
Q ss_pred --HHHHHHHHHHHHhccCCCccceeeecC
Q 005282 448 --RAVKRRVTLALAHLCAPDDCKTIFIDN 474 (704)
Q Consensus 448 --~~v~~~a~~~L~~l~~~~~~~~~l~~~ 474 (704)
..++.-||.+|.-|++++..++++.+.
T Consensus 756 ~aD~IRalAc~~L~GLaR~~tVrQIltKL 784 (1516)
T KOG1832|consen 756 TADCIRALACRVLLGLARDDTVRQILTKL 784 (1516)
T ss_pred cHHHHHHHHHHHHhccccCcHHHHHHHhC
Confidence 568889999999999999888665443
No 174
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.62 E-value=0.18 Score=46.60 Aligned_cols=150 Identities=10% Similarity=0.105 Sum_probs=110.0
Q ss_pred HHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhh-cChhhhhhhhccCCcHHH
Q 005282 120 KECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAH-ENANIKTRVRVEDGIPPL 198 (704)
Q Consensus 120 ~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~~L 198 (704)
..|...|--++..|+.|..+.++..--.+-.+|.....+.+ ..-++..+++.++.+.. ++.+.-..+...+++|..
T Consensus 97 cnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~---fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC 173 (293)
T KOG3036|consen 97 CNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRP---FEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC 173 (293)
T ss_pred HHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCc---hHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence 35556666666999999999999887788888876654333 34788999999999984 344556677889999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhc--------CCh-HHHHHhhcCCCHHHHHHHHHHHHHHhcCChhh
Q 005282 199 VELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVEC--------NAL-PTLVLMLRSEDASVHFEAVGVIGNLVHSSPSI 269 (704)
Q Consensus 199 ~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--------~~i-~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 269 (704)
++.+..++...+..|..++..+.. ++..-..+... ..+ ..+.++.+.+++.....++++..+++.+ +..
T Consensus 174 Lrime~GSelSKtvA~fIlqKIll-dD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn-pra 251 (293)
T KOG3036|consen 174 LRIMESGSELSKTVATFILQKILL-DDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN-PRA 251 (293)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhh-ccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC-HHH
Confidence 999999999999999999998875 44333222211 112 2334455678899999999999999854 666
Q ss_pred HHHHH
Q 005282 270 KKEVI 274 (704)
Q Consensus 270 ~~~~~ 274 (704)
+.++.
T Consensus 252 r~aL~ 256 (293)
T KOG3036|consen 252 RAALR 256 (293)
T ss_pred HHHHH
Confidence 65544
No 175
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.56 E-value=0.4 Score=51.64 Aligned_cols=215 Identities=14% Similarity=0.162 Sum_probs=133.2
Q ss_pred ChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHH
Q 005282 93 AVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAA 172 (704)
Q Consensus 93 ~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~ 172 (704)
.|.-+..+|.+.++ .++.+|+..|..++.+|..-... ...+++++.+..++ .+....+
T Consensus 244 ~i~~i~~lL~stss----------aV~fEaa~tlv~lS~~p~alk~A-----a~~~i~l~~kesdn-------nvklIvl 301 (948)
T KOG1058|consen 244 YIRCIYNLLSSTSS----------AVIFEAAGTLVTLSNDPTALKAA-----ASTYIDLLVKESDN-------NVKLIVL 301 (948)
T ss_pred HHHHHHHHHhcCCc----------hhhhhhcceEEEccCCHHHHHHH-----HHHHHHHHHhccCc-------chhhhhH
Confidence 35667777777765 77888888888888666644332 35666666554443 2333333
Q ss_pred HHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhh-c------
Q 005282 173 DAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLML-R------ 245 (704)
Q Consensus 173 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~------ 245 (704)
.-|..+...+. -+-.|.+--++++|.++|-+++..++.....|+... +...+ +..|-+-+ .
T Consensus 302 drl~~l~~~~~-----~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssr--Nvedi-----v~~Lkke~~kT~~~e~ 369 (948)
T KOG1058|consen 302 DRLSELKALHE-----KILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSR--NVEDI-----VQFLKKEVMKTHNEES 369 (948)
T ss_pred HHHHHHhhhhH-----HHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhc--cHHHH-----HHHHHHHHHhcccccc
Confidence 33333332111 112345555778888999999999999888887521 11111 11121111 1
Q ss_pred CCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHH
Q 005282 246 SEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLI 325 (704)
Q Consensus 246 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 325 (704)
..+..-|..-+.++...+...++.. +.+++.++..+.+.++......+..+.......+..+. .++..|+
T Consensus 370 d~~~~yRqlLiktih~cav~Fp~~a-----atvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~-----~ii~~l~ 439 (948)
T KOG1058|consen 370 DDNGKYRQLLIKTIHACAVKFPEVA-----ATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRA-----SIIEKLL 439 (948)
T ss_pred ccchHHHHHHHHHHHHHhhcChHHH-----HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHH-----HHHHHHH
Confidence 2344668888899988887666543 35788999999998887776666666666554444333 3455666
Q ss_pred HhhCC-CCHHHHHHHHHHHHHhhcCCc
Q 005282 326 EMLQS-PDSQLKEMSAFALGRLAQDTH 351 (704)
Q Consensus 326 ~ll~~-~~~~v~~~a~~~L~~l~~~~~ 351 (704)
..+.. .+.++-..|+|.++.-|....
T Consensus 440 ~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 440 ETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred HhhhhhcccccchhHHHHHHHHHhhhH
Confidence 55543 456777889999999887765
No 176
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.55 E-value=0.039 Score=48.00 Aligned_cols=136 Identities=13% Similarity=0.180 Sum_probs=101.0
Q ss_pred HHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcc
Q 005282 84 IVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRA 163 (704)
Q Consensus 84 ~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~ 163 (704)
+...++..||+..|+++++++.. .-++..++...++.++..|-+....--...+...+..++.++.....
T Consensus 3 FA~EFI~~~Gl~~L~~~iE~g~~----~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~------ 72 (160)
T PF11841_consen 3 FAQEFISRDGLTLLIKMIEEGTE----IQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAM------ 72 (160)
T ss_pred hHHHHHhccCHHHHHHHHHcCCc----cCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccc------
Confidence 34667889999999999999863 11122367778888888877432222234455567778888875543
Q ss_pred hhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhH
Q 005282 164 LSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKK 229 (704)
Q Consensus 164 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 229 (704)
+..+...++..|-++...++.....+.+.--++.|+..|+.++++++..++..+-.|-.+.++.+.
T Consensus 73 d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r 138 (160)
T PF11841_consen 73 DASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKR 138 (160)
T ss_pred cchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHH
Confidence 238999999999999987777777777777799999999999999999999999888765554433
No 177
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.52 E-value=0.015 Score=46.53 Aligned_cols=91 Identities=14% Similarity=0.097 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCC
Q 005282 294 KREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKN 373 (704)
Q Consensus 294 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~ 373 (704)
|.-++.+|...+..-+...... -..++++++..+.+++..+|..||++|.|++..........-...+..|.+++.+.+
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~-l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKY-LDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHH-HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 3445555665554333332222 245799999999999999999999999999976544333333466777889999999
Q ss_pred hhHHHHHHHHHHH
Q 005282 374 GSLQHNAAFALYG 386 (704)
Q Consensus 374 ~~v~~~a~~~L~~ 386 (704)
+.|+..| ..|-+
T Consensus 82 ~~Vr~~a-~~Ld~ 93 (97)
T PF12755_consen 82 ENVRSAA-ELLDR 93 (97)
T ss_pred hhHHHHH-HHHHH
Confidence 9998777 44443
No 178
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=96.51 E-value=0.021 Score=57.60 Aligned_cols=184 Identities=17% Similarity=0.160 Sum_probs=106.9
Q ss_pred CCHHHHHHHHHHHHHhccCCchhhHH-hHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcC----ChhhHHHHHH--cC
Q 005282 205 VDVKVQRAAAGALRTLAFKNDENKKL-IVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHS----SPSIKKEVIL--AG 277 (704)
Q Consensus 205 ~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~----~~~~~~~~~~--~~ 277 (704)
.+.-++..|++++.-+.- .+..+.. ..-.+....++..+.+..-..|..++|+++||+.. -|.....--. .-
T Consensus 403 ~~~lv~~aA~Ra~~VyVL-Hp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ 481 (728)
T KOG4535|consen 403 KNRLVKAAASRALGVYVL-HPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGL 481 (728)
T ss_pred HHHHHHHHHHhhceeEEe-ccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHH
Confidence 344566677777776665 3333332 23344566677777777788999999999999842 1221111111 11
Q ss_pred CHHHHHHHhc---CCChhHHHHHHHHHHHHhccCC---cchHHHHhcCChHHHH-HhhCCCCHHHHHHHHHHHHHhhcCC
Q 005282 278 ALQPVIGLLS---SSCSESKREAALLLGQFAAADS---NSKVHIVQRGAVRPLI-EMLQSPDSQLKEMSAFALGRLAQDT 350 (704)
Q Consensus 278 ~l~~L~~ll~---~~~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~~~i~~L~-~ll~~~~~~v~~~a~~~L~~l~~~~ 350 (704)
.+..++.... -.+..++.++..+|+|+..--. +........+.+..+. ........+|+.++|.+++||..++
T Consensus 482 ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~ 561 (728)
T KOG4535|consen 482 LLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNP 561 (728)
T ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCc
Confidence 2233333322 2345678899999999864211 1111111122222222 2223456789999999999999886
Q ss_pred chh--hhHHhhCChHHHHHhh-cCCChhHHHHHHHHHHHccc
Q 005282 351 HNQ--AGIAQDGGILPLLKLL-DSKNGSLQHNAAFALYGLAD 389 (704)
Q Consensus 351 ~~~--~~~~~~~~~~~L~~ll-~~~~~~v~~~a~~~L~~l~~ 389 (704)
.-. ..-+....++.|..++ +..|-.+|-.|+.+|..-..
T Consensus 562 a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 562 ALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred cccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence 542 2223334456677776 44788999999999887654
No 179
>PRK14707 hypothetical protein; Provisional
Probab=96.50 E-value=1.8 Score=52.60 Aligned_cols=334 Identities=18% Similarity=0.138 Sum_probs=179.2
Q ss_pred HHHHHHHHHHH-hhcChhHHHHHHhCCChHHHHhhccC-CCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcC
Q 005282 67 AAKTASHALVE-FAKNEEIVSLIVDNGAVPALVEHLQT-PPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTG 143 (704)
Q Consensus 67 ~~~~a~~~L~~-l~~~~~~~~~l~~~g~i~~L~~lL~~-~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g 143 (704)
.+..+...+.. ++.++..++.+ +.--+...+..|.. ++. .+...|+..|..=. ++++.+..+- .-
T Consensus 264 ~C~~a~~~lA~rl~~~~~l~~al-~~q~vanalNalSKwpd~----------~vc~~Aa~~la~rl~~d~~l~~~~~-~~ 331 (2710)
T PRK14707 264 VCAAAASALAERLVDDPGLRKAL-DPINVTQALNALSKWADL----------PVCAEAAIALAERLADDPELCKALN-AR 331 (2710)
T ss_pred HHHHHHHHHHHHHhhhHHHHHhc-CHHHHHHHHhhhhcCCCc----------hHHHHHHHHHHHHHhccHhhhhccc-hH
Confidence 34444444444 34456665555 33233333444433 333 56666666555544 8877765443 34
Q ss_pred CcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC
Q 005282 144 ALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFK 223 (704)
Q Consensus 144 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 223 (704)
.+...++.|++..+. .+...++.+|..-...+++.+..+-..|+-..|-.+-+-++......+...|..-..+
T Consensus 332 ~~~~~LNalsKWpd~-------~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~ 404 (2710)
T PRK14707 332 GLSTALNALSKWPDN-------PVCAAAVSALAERLVADPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVD 404 (2710)
T ss_pred HHHHHHHHhhcCCCc-------hhHHHHHHHHHHHhccCHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhcc
Confidence 556677777777653 5556666666554445676666555444444444444445555555555555554445
Q ss_pred CchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHH
Q 005282 224 NDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQ 303 (704)
Q Consensus 224 ~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~ 303 (704)
+++.++.+-..|+-..|-.+-+=++..+...++..|..-..++.+.++.+--.++...|-.+-+=++..+-..++..|..
T Consensus 405 d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~ 484 (2710)
T PRK14707 405 DLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICGQTASALAA 484 (2710)
T ss_pred ChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHH
Confidence 77888777666665555555556788888888888877666666766655544544444344444566666677777766
Q ss_pred HhccCCcchHHHHhcCChHHHHHhhCCCCH-HHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHH-hhcCCChhHHHHHH
Q 005282 304 FAAADSNSKVHIVQRGAVRPLIEMLQSPDS-QLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLK-LLDSKNGSLQHNAA 381 (704)
Q Consensus 304 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~-ll~~~~~~v~~~a~ 381 (704)
-...+++.++.+--.++...|-.+-+-++. ...+.+.+.-+.+.....-...+...+ +..+++ +-+..+....+.+.
T Consensus 485 ~l~~~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~~~~l~~~~~~~~-~~~~lnalSKwp~s~~C~~A~ 563 (2710)
T PRK14707 485 RLAHERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVVDELQLRKAFDAHQ-VVNTLKALSKWPDKQLCAVAA 563 (2710)
T ss_pred HhcccHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhccchhhhhhhhhHH-HHHHHHhhhcCCchhHHHHHH
Confidence 555455544444333444444444444543 344445555555554333322222222 222333 33445556666666
Q ss_pred HHHHHcccCCchhhHHHhhCCcccccccccccccchHHH
Q 005282 382 FALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCV 420 (704)
Q Consensus 382 ~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~ 420 (704)
..|..+.........-.....+..+++...+......|.
T Consensus 564 ~~iA~~l~~~~~~~~~L~aq~Vs~llNaLSKWP~~~aC~ 602 (2710)
T PRK14707 564 SGLAERLADEPQLPKDLHRQGVVIVLNALSKWPDTAVCA 602 (2710)
T ss_pred HHHHHHhhcchhhHHhhhhhHHHHHHHhhccCCCcHHHH
Confidence 666655433333333333444555555555554444443
No 180
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.48 E-value=1.2 Score=49.90 Aligned_cols=313 Identities=14% Similarity=0.115 Sum_probs=155.1
Q ss_pred CchhhHHHHHHHHHHHHHhhc----ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhh
Q 005282 60 SDETDRAAAKTASHALVEFAK----NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEH 135 (704)
Q Consensus 60 ~~~~~~~~~~~a~~~L~~l~~----~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~ 135 (704)
.+..+.....-|++.++++++ .+..+.. .+.=+++.+...++++-. -.|.+|||+++.+++- ++
T Consensus 427 ~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~-mE~flv~hVfP~f~s~~g----------~Lrarac~vl~~~~~~-df 494 (1010)
T KOG1991|consen 427 PPNKNPRQKDGALRMVGSLASILLKKSPYKSQ-MEYFLVNHVFPEFQSPYG----------YLRARACWVLSQFSSI-DF 494 (1010)
T ss_pred CCccChhhhhhHHHHHHHHHHHHccCCchHHH-HHHHHHHHhhHhhcCchh----------HHHHHHHHHHHHHHhc-cC
Confidence 555666677778888888774 2333222 244457778888888876 8999999999999911 11
Q ss_pred HHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhh--ccCCcHHHHHHhcCC--------
Q 005282 136 QQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVR--VEDGIPPLVELLKFV-------- 205 (704)
Q Consensus 136 ~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~~i~~L~~ll~~~-------- 205 (704)
.+...-..++....+.|.++.. -.++..|+.+|..+..+.+.....+. -.+.++.|+.+.+.-
T Consensus 495 ~d~~~l~~ale~t~~~l~~d~~-------lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~v 567 (1010)
T KOG1991|consen 495 KDPNNLSEALELTHNCLLNDNE-------LPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNV 567 (1010)
T ss_pred CChHHHHHHHHHHHHHhccCCc-------CchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHH
Confidence 1111222344555566663222 27888899999988865544322221 123333444443321
Q ss_pred --------C-------HHHHHHHHHHHHHhccC-----CchhhHHhHhcCChHHHHHhhcC--CCHHHH-----------
Q 005282 206 --------D-------VKVQRAAAGALRTLAFK-----NDENKKLIVECNALPTLVLMLRS--EDASVH----------- 252 (704)
Q Consensus 206 --------~-------~~~~~~a~~~L~~l~~~-----~~~~~~~~~~~~~i~~L~~lL~~--~~~~v~----------- 252 (704)
. .++..+...+.+.+... ....-+.+...|++..+-.++.+ ..+.+.
T Consensus 568 me~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi 647 (1010)
T KOG1991|consen 568 MEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVI 647 (1010)
T ss_pred HHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 1 12233333333333331 11233445566766666665542 233332
Q ss_pred ------------HHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcC-
Q 005282 253 ------------FEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRG- 319 (704)
Q Consensus 253 ------------~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~- 319 (704)
+.++..+.+++...++....+ -|.++.+.+.+.....+--....-+|.|....+.. .+...+
T Consensus 648 ~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~m--W~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~---~~~s~~~ 722 (1010)
T KOG1991|consen 648 GFILKNDITDFYEELLEIVSSLTFLSKEISPIM--WGLLELILEVFQDDGIDYFTDMMPALHNYVTYGTP---SLLSNPD 722 (1010)
T ss_pred HHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHH--HHHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCch---hhhccch
Confidence 222222222221111111111 13455555666665555566777778877643332 222222
Q ss_pred ChH----HHHHhhCC--CCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhh----c--CCChhHHHHHHHHH-HH
Q 005282 320 AVR----PLIEMLQS--PDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLL----D--SKNGSLQHNAAFAL-YG 386 (704)
Q Consensus 320 ~i~----~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll----~--~~~~~v~~~a~~~L-~~ 386 (704)
..+ ....++.+ ....=.+.|+..+..+..+-.+... ..++.++++. . ..+...+..++... .+
T Consensus 723 y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~d----q~iplf~~~a~~~l~~~~e~s~~~~~~leVvina 798 (1010)
T KOG1991|consen 723 YLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLD----QYIPLFLELALSRLTREVETSELRVMLLEVVINA 798 (1010)
T ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHh----hHhHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 222 33333433 2222334566666665543322111 1244444332 2 25667777777744 44
Q ss_pred cccCCchhhHHHhh
Q 005282 387 LADNEDNVADLVRV 400 (704)
Q Consensus 387 l~~~~~~~~~l~~~ 400 (704)
+-.+|.-.-.+.+.
T Consensus 799 lyynP~ltL~iLe~ 812 (1010)
T KOG1991|consen 799 LYYNPKLTLGILEN 812 (1010)
T ss_pred HHcCcHHHHHHHHH
Confidence 44566655444443
No 181
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.47 E-value=0.19 Score=45.92 Aligned_cols=92 Identities=24% Similarity=0.265 Sum_probs=72.6
Q ss_pred CHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcC-CHHHHHH
Q 005282 206 DVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAG-ALQPVIG 284 (704)
Q Consensus 206 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-~l~~L~~ 284 (704)
++.+|..++.+++.|+...+...+ ..++.+...|+++++.||+.|+.+|.+|...+-. .-.| .+..++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i-----k~k~~l~~~~l~ 70 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMI-----KVKGQLFSRILK 70 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce-----eehhhhhHHHHH
Confidence 578999999999999874443332 2478899999999999999999999999865321 1123 3477888
Q ss_pred HhcCCChhHHHHHHHHHHHHhcc
Q 005282 285 LLSSSCSESKREAALLLGQFAAA 307 (704)
Q Consensus 285 ll~~~~~~~~~~a~~~L~~l~~~ 307 (704)
++.+++++++..|..++..+...
T Consensus 71 ~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 71 LLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHh
Confidence 88999999999999999998754
No 182
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.47 E-value=0.035 Score=59.99 Aligned_cols=205 Identities=15% Similarity=0.108 Sum_probs=144.7
Q ss_pred CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHH-HhhhcChhhhhhhhccCCcHHHHHHhcCCCHH-
Q 005282 131 VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAIT-NLAHENANIKTRVRVEDGIPPLVELLKFVDVK- 208 (704)
Q Consensus 131 ~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~-~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~- 208 (704)
....-+...++.|+...|+.+...... ........+|. .+...... ....++++...+......
T Consensus 492 ~~K~~~~~~Ik~~~~~aLlrl~~~q~e--------~akl~~~~aL~~~i~f~~~~------~~~v~~~~~s~~~~d~~~~ 557 (748)
T KOG4151|consen 492 KEKYERAKKIKPGGYEALLRLGQQQFE--------EAKLKWYHALAGKIDFPGER------SYEVVKPLDSALHNDEKGL 557 (748)
T ss_pred hhHHhcCccccccHHHHHHHHHHHhch--------HHHHHHHHHHhhhcCCCCCc------hhhhhhhhcchhhhhHHHH
Confidence 566667778888999999999887765 55555556666 33221111 123455555555433322
Q ss_pred HHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHH-cCCHHHHHHHhc
Q 005282 209 VQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVIL-AGALQPVIGLLS 287 (704)
Q Consensus 209 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~ll~ 287 (704)
-...++.++.||+..+...++.+...-+++.+-.++..+++..++.++..+.||..+..-....+++ ...++.....+.
T Consensus 558 en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e 637 (748)
T KOG4151|consen 558 ENFEALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLE 637 (748)
T ss_pred HHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHH
Confidence 2356888999999878888888888777777777888899999999999999999875555555555 456666666666
Q ss_pred CCChhHHHHHHHHHHHHhccCCcchH-HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q 005282 288 SSCSESKREAALLLGQFAAADSNSKV-HIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQD 349 (704)
Q Consensus 288 ~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 349 (704)
.........++.++..++...+..+. ..........+..++.+++.+++......+.|+...
T Consensus 638 ~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~ 700 (748)
T KOG4151|consen 638 VADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEA 700 (748)
T ss_pred hhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHH
Confidence 66666677777777766655555555 333357788999999999999999988888885543
No 183
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.44 E-value=1.9 Score=47.08 Aligned_cols=272 Identities=17% Similarity=0.137 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc
Q 005282 166 GVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR 245 (704)
Q Consensus 166 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~ 245 (704)
-+...++.++.++...++.. . ...+..|-.++.++...+|..|.++|..+++..|.... .. =.-|-.++.
T Consensus 260 mV~~EaArai~~l~~~~~r~----l-~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~-~c----N~elE~lIt 329 (865)
T KOG1078|consen 260 MVIYEAARAIVSLPNTNSRE----L-APAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVT-VC----NLDLESLIT 329 (865)
T ss_pred HHHHHHHHHHhhccccCHhh----c-chHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccc-cc----chhHHhhhc
Confidence 56667777777776433321 1 12677777888888888999999999998874432111 00 112334444
Q ss_pred CCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHH
Q 005282 246 SEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLI 325 (704)
Q Consensus 246 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 325 (704)
+.+-.+-..|..+|..- +++.....+++ -+...+.=++++..-+...|..+|+.. .+.. ..+.+..|.
T Consensus 330 d~NrsIat~AITtLLKT--G~e~sv~rLm~--qI~~fv~disDeFKivvvdai~sLc~~---fp~k-----~~~~m~FL~ 397 (865)
T KOG1078|consen 330 DSNRSIATLAITTLLKT--GTESSVDRLMK--QISSFVSDISDEFKIVVVDAIRSLCLK---FPRK-----HTVMMNFLS 397 (865)
T ss_pred ccccchhHHHHHHHHHh--cchhHHHHHHH--HHHHHHHhccccceEEeHHHHHHHHhh---ccHH-----HHHHHHHHH
Confidence 55544544444444332 22222222221 122222222232222334444444432 2222 124567777
Q ss_pred HhhCC-CCHHHHHHHHHHHHHhhc-CCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHHHhhCCc
Q 005282 326 EMLQS-PDSQLKEMSAFALGRLAQ-DTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGV 403 (704)
Q Consensus 326 ~ll~~-~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i 403 (704)
++|+. +..+-+.....++..+.. +++.+. .++..|+..+.+. +...-+...|.-+.. +|..
T Consensus 398 ~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDc--e~~~i~~rILhlLG~----------EgP~ 460 (865)
T KOG1078|consen 398 NMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDC--EFTQIAVRILHLLGK----------EGPK 460 (865)
T ss_pred HHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhc--cchHHHHHHHHHHhc----------cCCC
Confidence 77764 566777888888887776 333332 3445566665432 222233333333321 1111
Q ss_pred ccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccC-CCccceeeecCCcHHHHHH
Q 005282 404 QKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCA-PDDCKTIFIDNNGLELLLG 482 (704)
Q Consensus 404 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~l~~~~~i~~L~~ 482 (704)
..- .+..+..+...+.-.+..++.+|..+|.++.. .+. ......-.|.+
T Consensus 461 a~~-------------------------Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~-----l~~sI~vllkR 510 (865)
T KOG1078|consen 461 APN-------------------------PSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVV-----LLPSILVLLKR 510 (865)
T ss_pred CCC-------------------------cchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCC-----ccccHHHHHHH
Confidence 100 01122233444455778899999999999952 221 22345566778
Q ss_pred HHhhcchhhhhhHHHHHHHHhhhc
Q 005282 483 LLESTSVKQREESSVALYKLATKA 506 (704)
Q Consensus 483 ll~~~~~~~~~~a~~~L~~L~~~~ 506 (704)
.+.+.+..+|.+|..+|..+-...
T Consensus 511 c~~D~DdevRdrAtf~l~~l~~~~ 534 (865)
T KOG1078|consen 511 CLNDSDDEVRDRATFYLKNLEEKD 534 (865)
T ss_pred HhcCchHHHHHHHHHHHHHhhhhh
Confidence 888899999999999999887433
No 184
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.67 Score=49.93 Aligned_cols=129 Identities=19% Similarity=0.222 Sum_probs=87.2
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHH-hcCCChhHHHHHHHHHHHHhccCCcchHHHH
Q 005282 238 PTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGL-LSSSCSESKREAALLLGQFAAADSNSKVHIV 316 (704)
Q Consensus 238 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l-l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 316 (704)
+.+-+++.+.|+-+|.....+++.--.+. .+.+++..|+.+ .++.+.++++.|+-+|+-++..+++.
T Consensus 522 ~lI~el~~dkdpilR~~Gm~t~alAy~GT-------gnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~----- 589 (929)
T KOG2062|consen 522 PLIKELLRDKDPILRYGGMYTLALAYVGT-------GNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ----- 589 (929)
T ss_pred HHHHHHhcCCchhhhhhhHHHHHHHHhcc-------CchhhHHHhhcccccccchHHHHHHHHHheeeEecChhh-----
Confidence 34455666777777776666554322221 123467777776 56778899999999999888766553
Q ss_pred hcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcc
Q 005282 317 QRGAVRPLIEMLQ-SPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLA 388 (704)
Q Consensus 317 ~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~ 388 (704)
.+..+.+|. +-++.||..++.+|+-.|.+..++..+ ..|-.+..+...-||..|+-++.-+.
T Consensus 590 ----~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi------~lLepl~~D~~~fVRQgAlIa~amIm 652 (929)
T KOG2062|consen 590 ----LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAI------NLLEPLTSDPVDFVRQGALIALAMIM 652 (929)
T ss_pred ----chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHH------HHHhhhhcChHHHHHHHHHHHHHHHH
Confidence 455666665 568899999999999988887665533 23334455666678888888777664
No 185
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.33 E-value=1.5 Score=50.07 Aligned_cols=220 Identities=14% Similarity=0.093 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHHhhhcChhhhhhhhc--cCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCc-hhhHHhHhcCChHHHHH
Q 005282 166 GVIRRAADAITNLAHENANIKTRVRV--EDGIPPLVELLKFVDVKVQRAAAGALRTLAFKND-ENKKLIVECNALPTLVL 242 (704)
Q Consensus 166 ~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~ 242 (704)
.++..+...|..++.. +........ ..+...|.+-+++.+...+...+.+|..+....+ +....+.. .++-++-
T Consensus 669 ~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k--~I~EvIL 745 (1176)
T KOG1248|consen 669 KVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPK--LIPEVIL 745 (1176)
T ss_pred HHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHH--HHHHHHH
Confidence 7888888888888864 322221111 1223445555556667788888888888765444 22222222 2444444
Q ss_pred hhcCCCHHHHHHHHHHHHHHhc--CC--hh-hHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHh
Q 005282 243 MLRSEDASVHFEAVGVIGNLVH--SS--PS-IKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQ 317 (704)
Q Consensus 243 lL~~~~~~v~~~a~~~L~~l~~--~~--~~-~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 317 (704)
.++..+...++.+..+|..+.. .. +. ......-..++..+...+-..........+.++..+..........-.-
T Consensus 746 ~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l 825 (1176)
T KOG1248|consen 746 SLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETL 825 (1176)
T ss_pred hcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 5588889999999999988873 10 00 0001111123333333333333333322245555555433333332333
Q ss_pred cCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC-CchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcc
Q 005282 318 RGAVRPLIEMLQSPDSQLKEMSAFALGRLAQD-THNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLA 388 (704)
Q Consensus 318 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~ 388 (704)
.++++.+..++.+..++++..|...+..++.. ++..........++.+..++++....++..+...|..|.
T Consensus 826 ~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLi 897 (1176)
T KOG1248|consen 826 EKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLI 897 (1176)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 45677777788899999999999999999865 444444444556788888888888888888888887775
No 186
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=96.32 E-value=0.56 Score=51.72 Aligned_cols=319 Identities=13% Similarity=0.153 Sum_probs=183.6
Q ss_pred HHHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcC----hhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHH
Q 005282 46 DIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKN----EEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKE 121 (704)
Q Consensus 46 ~~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~----~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~ 121 (704)
....+..++...+..++...... ++++.+...+.. +.....+ +...+..+..+.+ +-++..
T Consensus 446 ~l~~l~~~~~~~l~~~e~P~Ll~-Ra~~~i~~fs~~~~~~~~~~~~f-----l~~~v~~l~~~~~---------~~~ki~ 510 (1005)
T KOG2274|consen 446 KLIELTIMIDNGLVYQESPFLLL-RAFLTISKFSSSTVINPQLLQHF-----LNATVNALTMDVP---------PPVKIS 510 (1005)
T ss_pred HHHHHHHHHHhhcccccCHHHHH-HHHHHHHHHHhhhccchhHHHHH-----HHHHHHhhccCCC---------CchhHH
Confidence 34444444444444444444444 888888876652 3333332 4555666655544 257888
Q ss_pred HHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHH
Q 005282 122 CAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVEL 201 (704)
Q Consensus 122 a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 201 (704)
|+++++-.++..-+.. ...+.+..|.++..+..+ ++..-.+.+|+..+.-+++... ..+..+.|..+.+
T Consensus 511 a~~~~~~~~~~~vl~~--~~p~ild~L~qlas~~s~--------evl~llmE~Ls~vv~~dpef~a-s~~skI~P~~i~l 579 (1005)
T KOG2274|consen 511 AVRAFCGYCKVKVLLS--LQPMILDGLLQLASKSSD--------EVLVLLMEALSSVVKLDPEFAA-SMESKICPLTINL 579 (1005)
T ss_pred HHHHHHhccCceeccc--cchHHHHHHHHHcccccH--------HHHHHHHHHHHHHhccChhhhh-hhhcchhHHHHHH
Confidence 8888877773222111 123455667777766665 8888889999999987776433 5556677776666
Q ss_pred hc--CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCC----HHHHHHHHHHHHHHhcCChhhHHHHHH
Q 005282 202 LK--FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSED----ASVHFEAVGVIGNLVHSSPSIKKEVIL 275 (704)
Q Consensus 202 l~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~----~~v~~~a~~~L~~l~~~~~~~~~~~~~ 275 (704)
.. +++|.+...+-.++..++. ...+..-+ ....+|.++..+..++ +.....++..|..+.+..+.-......
T Consensus 580 F~k~s~DP~V~~~~qd~f~el~q-~~~~~g~m-~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~ 657 (1005)
T KOG2274|consen 580 FLKYSEDPQVASLAQDLFEELLQ-IAANYGPM-QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI 657 (1005)
T ss_pred HHHhcCCchHHHHHHHHHHHHHH-HHHhhcch-HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH
Confidence 54 6788888888888888885 33333323 3346899999998765 567777888888777665443333333
Q ss_pred cCCHHHHHHHh-cCCChhHHHHHHHHHHHHhccCCcchHHHHhcCC------hHHHHHhhCCCCHHHHHHHHHHHHHhh-
Q 005282 276 AGALQPVIGLL-SSSCSESKREAALLLGQFAAADSNSKVHIVQRGA------VRPLIEMLQSPDSQLKEMSAFALGRLA- 347 (704)
Q Consensus 276 ~~~l~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~------i~~L~~ll~~~~~~v~~~a~~~L~~l~- 347 (704)
.-++|++.+.. .+++......+-.+|+.+...+.+....-...++ ++.+-.+|.- +.-..++..++.+.
T Consensus 658 ~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp---~~sds~a~~VG~lV~ 734 (1005)
T KOG2274|consen 658 CYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDP---ETSDSAAAFVGPLVL 734 (1005)
T ss_pred HHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCC---ccchhHHHHHhHHHH
Confidence 34566666554 5667778888888888877644433333322222 3344444432 22222333333332
Q ss_pred ---cCCchhhhHHhh--CChHH-HHHhhcCCChhHHHHHHHHHHHccc-CCchhhHH
Q 005282 348 ---QDTHNQAGIAQD--GGILP-LLKLLDSKNGSLQHNAAFALYGLAD-NEDNVADL 397 (704)
Q Consensus 348 ---~~~~~~~~~~~~--~~~~~-L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~l 397 (704)
.+.. ..+... ..+.. +.++.......+......+++.|.. +.+..-.+
T Consensus 735 tLit~a~--~el~~n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~~t~~~~~l~F 789 (1005)
T KOG2274|consen 735 TLITHAS--SELGPNLDQILRAVISRLQQAETLSVIQSLIMVFAHLVHTDLDQLLNF 789 (1005)
T ss_pred HHHHHHH--HHhchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhCCHHHHHHH
Confidence 2111 011100 11222 3345555677777888888888875 34433333
No 187
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.29 E-value=2 Score=48.12 Aligned_cols=260 Identities=13% Similarity=0.075 Sum_probs=137.3
Q ss_pred HHHHHHHhhc-C-ChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhh---cChhhhhhhhccCCc
Q 005282 121 ECAFALGLLA-V-KPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAH---ENANIKTRVRVEDGI 195 (704)
Q Consensus 121 ~a~~~L~~l~-~-~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~~~~i 195 (704)
.|..++..++ . .++.- .|.++.+++.+.+....+...+.+.-...|+.++++++. .....+. ..+.=.+
T Consensus 391 Aa~~~l~~~~~KR~ke~l-----~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~-~mE~flv 464 (1010)
T KOG1991|consen 391 AALDFLTTLVSKRGKETL-----PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKS-QMEYFLV 464 (1010)
T ss_pred HHHHHHHHHHHhcchhhh-----hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHH-HHHHHHH
Confidence 4555666555 2 23322 356678888887655443333334666778888888872 1222222 3334446
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 005282 196 PPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR-SEDASVHFEAVGVIGNLVHSSPSIKKEVI 274 (704)
Q Consensus 196 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 274 (704)
+.+...++++.-.+|..|||.+..++.-+=.....+ ..++......|. +.+-.|+..|+-+|..+..+.+.....+.
T Consensus 465 ~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~ 542 (1010)
T KOG1991|consen 465 NHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVS 542 (1010)
T ss_pred HHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHh
Confidence 677778888989999999999999994121122212 223566677776 77788999999999998877554433222
Q ss_pred H--cCCHHHHHHHhcCCChhHHHHHHHHH-HHHhccCCcchHHHHhcCChHHHHHhhCC---C---CHHHHHHHHHHHHH
Q 005282 275 L--AGALQPVIGLLSSSCSESKREAALLL-GQFAAADSNSKVHIVQRGAVRPLIEMLQS---P---DSQLKEMSAFALGR 345 (704)
Q Consensus 275 ~--~~~l~~L~~ll~~~~~~~~~~a~~~L-~~l~~~~~~~~~~~~~~~~i~~L~~ll~~---~---~~~v~~~a~~~L~~ 345 (704)
. .+.++.|+++.+.-+.+....+...+ ...+..-......+. .++.....+++.. . +.+=.-.|.+.|..
T Consensus 543 ~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~-q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~T 621 (1010)
T KOG1991|consen 543 AHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELC-QNLAETFLKVLQTSEDEDESDDDKAIAASGILRT 621 (1010)
T ss_pred hhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHH-HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHH
Confidence 2 23455556666555555444444322 222211111111111 2344555555542 1 11222233344433
Q ss_pred hh---cCCchhhhHH---hhCChHHHHHhhcCCChhHHHHHHHHHHHccc
Q 005282 346 LA---QDTHNQAGIA---QDGGILPLLKLLDSKNGSLQHNAAFALYGLAD 389 (704)
Q Consensus 346 l~---~~~~~~~~~~---~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 389 (704)
+. ..-++...+. +...++.+-.++.+.-.++-+.++..+.+++.
T Consensus 622 i~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~ 671 (1010)
T KOG1991|consen 622 ISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTF 671 (1010)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhh
Confidence 33 2222222222 12223333445555556666677766666653
No 188
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.27 E-value=0.27 Score=46.54 Aligned_cols=228 Identities=11% Similarity=0.092 Sum_probs=139.4
Q ss_pred chHHHHHHHHHHHhhc-CChhhHHHHHHc-CCcHHHHHHHhhccCCCCC----cchhHHHHHHHHHHHHhhhcChhhhhh
Q 005282 115 EHEVEKECAFALGLLA-VKPEHQQIIVDT-GALPHLVSLLKQYKNGGNS----RALSGVIRRAADAITNLAHENANIKTR 188 (704)
Q Consensus 115 d~~v~~~a~~~L~~l~-~~~~~~~~~~~~-g~l~~L~~lL~~~~~~~~~----~~~~~~~~~a~~~L~~l~~~~~~~~~~ 188 (704)
+++.|+.|+.-|+.-- ..++....+... |.+..|++-+-+..+.-.. .....-.-+++..|..++. +++.+..
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~~ 86 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRMP 86 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHHH
Confidence 3578888888887777 566666666655 5556666555443211110 0001222334444445554 8889999
Q ss_pred hhccCCcHHHHHHhcCC-----CHHHHHHHHHHHHHhcc-CCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHH
Q 005282 189 VRVEDGIPPLVELLKFV-----DVKVQRAAAGALRTLAF-KNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNL 262 (704)
Q Consensus 189 ~~~~~~i~~L~~ll~~~-----~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l 262 (704)
+.+..+.-.|..+|+.. -+.+|..++++++.+.. ++++....+.+.+++|..++.+..+++-.+..|..++..+
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI 166 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI 166 (262)
T ss_dssp HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 99999988899998843 26789999999999986 3446667778899999999999999988899999998888
Q ss_pred hcCChhhHHHHH--------HcCCHHHHH-HHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHh----hC
Q 005282 263 VHSSPSIKKEVI--------LAGALQPVI-GLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEM----LQ 329 (704)
Q Consensus 263 ~~~~~~~~~~~~--------~~~~l~~L~-~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l----l~ 329 (704)
..++.. ...+. -..++..++ .+...+++.+.+..+++-..++. ++..+..+.. ...+.|-+- +-
T Consensus 167 L~dd~G-L~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsd-nprar~aL~~-~LP~~Lrd~~f~~~l 243 (262)
T PF04078_consen 167 LLDDVG-LNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSD-NPRAREALRQ-CLPDQLRDGTFSNIL 243 (262)
T ss_dssp HHSHHH-HHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTT-STTHHHHHHH-HS-GGGTSSTTTTGG
T ss_pred HcchhH-HHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcc-CHHHHHHHHH-hCcHHHhcHHHHHHH
Confidence 765322 21111 122344444 34467788888999999888874 5444443322 111111111 11
Q ss_pred CCCHHHHHHHHHHHHHh
Q 005282 330 SPDSQLKEMSAFALGRL 346 (704)
Q Consensus 330 ~~~~~v~~~a~~~L~~l 346 (704)
.+|+.++..-...+.|+
T Consensus 244 ~~D~~~k~~l~qLl~nl 260 (262)
T PF04078_consen 244 KDDPSTKRWLQQLLSNL 260 (262)
T ss_dssp CS-HHHHHHHHHHHHHT
T ss_pred hcCHHHHHHHHHHHHHh
Confidence 24677777776666665
No 189
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.19 E-value=0.036 Score=44.35 Aligned_cols=90 Identities=14% Similarity=0.216 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHH--cCCHHHHHHHhc
Q 005282 210 QRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVIL--AGALQPVIGLLS 287 (704)
Q Consensus 210 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~ll~ 287 (704)
|..++.+|...+..-+...... -..+++.++..+.++++.||..|+.+|.|++... +..+.. ..+++.|.+++.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~-l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~---~~~~l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKY-LDEILPPVLKCFDDQDSRVRYYACEALYNISKVA---RGEILPYFNEIFDALCKLSA 78 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHH-HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHc
Confidence 4556777777765433332222 2346889999999999999999999999998542 333332 467788888888
Q ss_pred CCChhHHHHHHHHHHHH
Q 005282 288 SSCSESKREAALLLGQF 304 (704)
Q Consensus 288 ~~~~~~~~~a~~~L~~l 304 (704)
++++.++..| ..|.++
T Consensus 79 D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 79 DPDENVRSAA-ELLDRL 94 (97)
T ss_pred CCchhHHHHH-HHHHHH
Confidence 8888876554 555554
No 190
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.16 E-value=0.44 Score=43.53 Aligned_cols=93 Identities=16% Similarity=0.240 Sum_probs=73.7
Q ss_pred CHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHh
Q 005282 248 DASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEM 327 (704)
Q Consensus 248 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 327 (704)
++.+|..++.+++-++...+...+ ..++.+...|.++++.+|..|+.+|..+...+--... ..++..++..
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k----~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK----GQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh----hhhhHHHHHH
Confidence 578999999999999866554332 4678999999999999999999999999864321111 1234777888
Q ss_pred hCCCCHHHHHHHHHHHHHhhcC
Q 005282 328 LQSPDSQLKEMSAFALGRLAQD 349 (704)
Q Consensus 328 l~~~~~~v~~~a~~~L~~l~~~ 349 (704)
+.+++++++..|...+..+...
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999876
No 191
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.14 E-value=3.1 Score=48.95 Aligned_cols=147 Identities=13% Similarity=0.170 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHH
Q 005282 42 DLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEK 120 (704)
Q Consensus 42 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~ 120 (704)
.+.......+..++..+. +....++.+|+++|..+.. +|.+... ...-..+-.=+.+... .||+
T Consensus 809 ~f~~sfD~yLk~Il~~l~--e~~ialRtkAlKclS~ive~Dp~vL~~---~dvq~~Vh~R~~Dssa----------sVRE 873 (1692)
T KOG1020|consen 809 SFSQSFDPYLKLILSVLG--ENAIALRTKALKCLSMIVEADPSVLSR---PDVQEAVHGRLNDSSA----------SVRE 873 (1692)
T ss_pred HHHHhhHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhcChHhhcC---HHHHHHHHHhhccchh----------HHHH
Confidence 344455555666666555 5666789999999999987 4433211 1111222222334433 7999
Q ss_pred HHHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHH
Q 005282 121 ECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLV 199 (704)
Q Consensus 121 ~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 199 (704)
.|+..++... ..++...+.. ..+..-+.+... .||..+...+..+|...|.... .+..+.
T Consensus 874 AaldLvGrfvl~~~e~~~qyY-----~~i~erIlDtgv--------sVRKRvIKIlrdic~e~pdf~~------i~~~ca 934 (1692)
T KOG1020|consen 874 AALDLVGRFVLSIPELIFQYY-----DQIIERILDTGV--------SVRKRVIKILRDICEETPDFSK------IVDMCA 934 (1692)
T ss_pred HHHHHHhhhhhccHHHHHHHH-----HHHHhhcCCCch--------hHHHHHHHHHHHHHHhCCChhh------HHHHHH
Confidence 9999999888 7776654443 334444444443 8999999999999987776533 244555
Q ss_pred HHhc--CCCH-HHHHHHHHHHHHhcc
Q 005282 200 ELLK--FVDV-KVQRAAAGALRTLAF 222 (704)
Q Consensus 200 ~ll~--~~~~-~~~~~a~~~L~~l~~ 222 (704)
++++ ++.. .++.-+..++.++..
T Consensus 935 kmlrRv~DEEg~I~kLv~etf~klWF 960 (1692)
T KOG1020|consen 935 KMLRRVNDEEGNIKKLVRETFLKLWF 960 (1692)
T ss_pred HHHHHhccchhHHHHHHHHHHHHHhc
Confidence 6665 3334 489999999999876
No 192
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.12 E-value=3 Score=46.30 Aligned_cols=102 Identities=25% Similarity=0.181 Sum_probs=79.9
Q ss_pred hHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHH
Q 005282 94 VPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAAD 173 (704)
Q Consensus 94 i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~ 173 (704)
++.+..=++++++ .+|..|+++++.+-.. +.- ..+++++.+++.+.+. .++..|+.
T Consensus 94 vNti~kDl~d~N~----------~iR~~AlR~ls~l~~~-el~-----~~~~~~ik~~l~d~~a--------yVRk~Aal 149 (757)
T COG5096 94 VNTIQKDLQDPNE----------EIRGFALRTLSLLRVK-ELL-----GNIIDPIKKLLTDPHA--------YVRKTAAL 149 (757)
T ss_pred HHHHHhhccCCCH----------HHHHHHHHHHHhcChH-HHH-----HHHHHHHHHHccCCcH--------HHHHHHHH
Confidence 5666666777765 9999999998877632 221 2345788888887776 99999999
Q ss_pred HHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhcc
Q 005282 174 AITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAF 222 (704)
Q Consensus 174 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 222 (704)
++.++..-++ ..+.+.|.+..+..++.+.+|.+..+|+.++..+..
T Consensus 150 av~kly~ld~---~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 150 AVAKLYRLDK---DLYHELGLIDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred HHHHHHhcCH---hhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 9999986444 346677888999999999999999999999999974
No 193
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.04 E-value=0.012 Score=48.33 Aligned_cols=71 Identities=18% Similarity=0.251 Sum_probs=60.9
Q ss_pred CcHHHHHHhc-CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 005282 194 GIPPLVELLK-FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVH 264 (704)
Q Consensus 194 ~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 264 (704)
.+..|+.+|. +.++.+...||.=|+.++...|..+..+-+.|+=..++.++.++|++|+..|+.++..+..
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3677889994 5688889999999999999889999999899999999999999999999999999987753
No 194
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=96.02 E-value=0.48 Score=48.73 Aligned_cols=272 Identities=15% Similarity=0.148 Sum_probs=145.2
Q ss_pred hHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHH
Q 005282 94 VPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAAD 173 (704)
Q Consensus 94 i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~ 173 (704)
|..+++-+.+..+ ..+|..++--|+.-+.++++|..+..+|.+..+++.+.+..+. .+...+..
T Consensus 23 v~ylld~l~~~~~---------~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d-------~~~~l~~a 86 (361)
T PF07814_consen 23 VEYLLDGLESSSS---------SSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDD-------DILALATA 86 (361)
T ss_pred HHHHHhhcccCCC---------ccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccch-------HHHHHHHH
Confidence 4777777774433 3789999888988889999999999999999999999766551 24444444
Q ss_pred HHHHhhhcChhhhhhhhccCCcHHHHHHhcCC-CHHHHHHH-HHHHHHhccCCchhhHHhHhcCChHHHHHhhc------
Q 005282 174 AITNLAHENANIKTRVRVEDGIPPLVELLKFV-DVKVQRAA-AGALRTLAFKNDENKKLIVECNALPTLVLMLR------ 245 (704)
Q Consensus 174 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a-~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~------ 245 (704)
++..+...+......+...+....++.++... ...+.... ..-=.+++ .. ....+..+...+.
T Consensus 87 ~i~~~l~~d~~~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~ls--------k~-~~~~~~~~~~~~~~~~~~~ 157 (361)
T PF07814_consen 87 AILYVLSRDGLNMHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLS--------KV-QQKSRSLCKELLSSGSSWK 157 (361)
T ss_pred HHHHHHccCCcchhhhhchhHHHHHHHHhccccccccccchhhhhhhhhh--------HH-HHHHHHHHHHHHhcccccc
Confidence 44443322333333344555566667777611 00000000 00000000 00 0001111111110
Q ss_pred ---CCCHHHHHHHHHHHHHHh--------------cCChhhHHHHHHcCCHHHHHHHhcC----C-------C-----hh
Q 005282 246 ---SEDASVHFEAVGVIGNLV--------------HSSPSIKKEVILAGALQPVIGLLSS----S-------C-----SE 292 (704)
Q Consensus 246 ---~~~~~v~~~a~~~L~~l~--------------~~~~~~~~~~~~~~~l~~L~~ll~~----~-------~-----~~ 292 (704)
.....-+..|+.++..++ ...+..++.+...|+++.++.++.+ . . ..
T Consensus 158 ~~~~~~lsp~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~ 237 (361)
T PF07814_consen 158 SPKPPELSPQTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLI 237 (361)
T ss_pred ccCCcccccccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHH
Confidence 122233445555555442 1223445666777889999988752 1 0 11
Q ss_pred HHHHHHHHHHHHhccCCcchHHHHhc--CCh-HHHHHhhCC---CCHHHHHHHHHHHHHhhcCC-chhhhHHhhCChH--
Q 005282 293 SKREAALLLGQFAAADSNSKVHIVQR--GAV-RPLIEMLQS---PDSQLKEMSAFALGRLAQDT-HNQAGIAQDGGIL-- 363 (704)
Q Consensus 293 ~~~~a~~~L~~l~~~~~~~~~~~~~~--~~i-~~L~~ll~~---~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~-- 363 (704)
....+..+|-+.+..+++++..+... +.+ ..+..++.. ........+++.+.|++-++ ..+..+...+...
T Consensus 238 ~l~~cl~ILEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~ 317 (361)
T PF07814_consen 238 DLERCLSILESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQL 317 (361)
T ss_pred HHHHHHHHHHHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccch
Confidence 24457778888887777777766654 223 333333332 23344567888888988664 3333333321111
Q ss_pred -HHHHh----hc-------CCChhHHHHHHHHHHHcccC
Q 005282 364 -PLLKL----LD-------SKNGSLQHNAAFALYGLADN 390 (704)
Q Consensus 364 -~L~~l----l~-------~~~~~v~~~a~~~L~~l~~~ 390 (704)
.+... .. ...-+..--++++|.||+..
T Consensus 318 ~~i~~~~~~~~~~~~~~~~~~~~D~~IL~Lg~LINL~E~ 356 (361)
T PF07814_consen 318 GLIVTSFFCVLSLPNYVPEESSFDILILALGLLINLVEH 356 (361)
T ss_pred HHHHHhhcccccccccccccccchHHHHHHHhHHHheee
Confidence 11111 11 12335677888889998863
No 195
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.92 Score=48.96 Aligned_cols=162 Identities=22% Similarity=0.207 Sum_probs=103.7
Q ss_pred CCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHh-hcCCCHHHHHHHHHHHHHHhcCChhhHH
Q 005282 193 DGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLM-LRSEDASVHFEAVGVIGNLVHSSPSIKK 271 (704)
Q Consensus 193 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~ 271 (704)
++=+.+-+++.+.+|-+|.....++..--.+.. ..+++..|++. ..+.+.+||+.|+-+|+-++..+++.
T Consensus 519 ~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~-- 589 (929)
T KOG2062|consen 519 DADPLIKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ-- 589 (929)
T ss_pred hhHHHHHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhcccccccchHHHHHHHHHheeeEecChhh--
Confidence 444566677788888888776655443221111 22356667766 56789999999999999998776653
Q ss_pred HHHHcCCHHHHHHHhc-CCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q 005282 272 EVILAGALQPVIGLLS-SSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDT 350 (704)
Q Consensus 272 ~~~~~~~l~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 350 (704)
++..+++|. +-++.+|.-++.+|+-.|.+. ..+. ++..|-.+..++..-||..|+-+++.+..-.
T Consensus 590 -------~~s~V~lLses~N~HVRyGaA~ALGIaCAGt-G~~e------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~ 655 (929)
T KOG2062|consen 590 -------LPSTVSLLSESYNPHVRYGAAMALGIACAGT-GLKE------AINLLEPLTSDPVDFVRQGALIALAMIMIQQ 655 (929)
T ss_pred -------chHHHHHHhhhcChhhhhhHHHHHhhhhcCC-CcHH------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhc
Confidence 556666775 557889999999999877643 3322 3455555556677779998888888766322
Q ss_pred chhhhHHhhCChHHHHHhhcCCChhHH
Q 005282 351 HNQAGIAQDGGILPLLKLLDSKNGSLQ 377 (704)
Q Consensus 351 ~~~~~~~~~~~~~~L~~ll~~~~~~v~ 377 (704)
..+..-.-.++.+.+.+.+.+++.+..
T Consensus 656 t~~~~pkv~~frk~l~kvI~dKhEd~~ 682 (929)
T KOG2062|consen 656 TEQLCPKVNGFRKQLEKVINDKHEDGM 682 (929)
T ss_pred ccccCchHHHHHHHHHHHhhhhhhHHH
Confidence 111111112344556777766555443
No 196
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=95.82 E-value=2.8 Score=45.49 Aligned_cols=322 Identities=13% Similarity=0.082 Sum_probs=167.5
Q ss_pred HHHHHHHHHHHHhhhcc--CCchhhHHHHHHHHHHHHHhhc--C-hhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCch
Q 005282 42 DLVQDIRAQIDILNSKF--SSDETDRAAAKTASHALVEFAK--N-EEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEH 116 (704)
Q Consensus 42 ~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~a~~~L~~l~~--~-~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~ 116 (704)
.+...++-++++|.+.- .++.++.....-|++.+.++.. + +.....+.+.=+++.++..++++-.
T Consensus 405 TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~yg---------- 474 (970)
T COG5656 405 TFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYG---------- 474 (970)
T ss_pred hhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCccc----------
Confidence 34555666677774433 2334667777788888888765 2 2333344455678888888888876
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhc--cCC
Q 005282 117 EVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRV--EDG 194 (704)
Q Consensus 117 ~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~ 194 (704)
-++.+||..+..+. .++.+..+-..+.......+++.+- .++-.|+.++.-+..+. .....+.+ .+.
T Consensus 475 fL~Srace~is~~e--eDfkd~~ill~aye~t~ncl~nn~l--------pv~ieAalAlq~fi~~~-q~h~k~sahVp~t 543 (970)
T COG5656 475 FLKSRACEFISTIE--EDFKDNGILLEAYENTHNCLKNNHL--------PVMIEAALALQFFIFNE-QSHEKFSAHVPET 543 (970)
T ss_pred chHHHHHHHHHHHH--HhcccchHHHHHHHHHHHHHhcCCc--------chhhhHHHHHHHHHhch-hhhHHHHhhhhHH
Confidence 79999999999995 3344444444556667777777444 67788888888877533 22222221 233
Q ss_pred cHHHHHHhcCCCHHHHHHHHHHHH-HhccCCchhhHHhHhcCChHHHH----HhhcCC-C-----HHHHHHHHHHHHHHh
Q 005282 195 IPPLVELLKFVDVKVQRAAAGALR-TLAFKNDENKKLIVECNALPTLV----LMLRSE-D-----ASVHFEAVGVIGNLV 263 (704)
Q Consensus 195 i~~L~~ll~~~~~~~~~~a~~~L~-~l~~~~~~~~~~~~~~~~i~~L~----~lL~~~-~-----~~v~~~a~~~L~~l~ 263 (704)
++.|+.+-+.-+.+....+...+. ..+..-......++. ..+..++ .++..+ + ++-+..|.+.|..+.
T Consensus 544 mekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~-~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~ 622 (970)
T COG5656 544 MEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAG-SLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIE 622 (970)
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHH-HHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHH
Confidence 344444444333333333222221 111100011111111 1122222 233222 1 122334444444332
Q ss_pred c---C---ChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCH-HHH
Q 005282 264 H---S---SPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDS-QLK 336 (704)
Q Consensus 264 ~---~---~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~v~ 336 (704)
. + .+...+ -......|.+--++.+...+...+|+..+.+.+....+-- -+.-|+.+.+.+++.++.. .-.
T Consensus 623 smiLSlen~p~vLk-~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~--pimwgi~Ell~~~l~~~~t~~y~ 699 (970)
T COG5656 623 SMILSLENRPLVLK-YLEVSLYPVISFILKNEISDFYQEALDILDGYTFMSKEIE--PIMWGIFELLLNLLIDEITAVYS 699 (970)
T ss_pred HHHHhcccchHHHH-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhh--hhhhHHHHHHHhcccccchhhhH
Confidence 1 1 111111 1223456666667777777888888888877654222111 2224667777777776653 566
Q ss_pred HHHHHHHHHhhcCCch---hhhHHhhCChHHHHHhhcCCCh--hHHHHHHHHHHHcc
Q 005282 337 EMSAFALGRLAQDTHN---QAGIAQDGGILPLLKLLDSKNG--SLQHNAAFALYGLA 388 (704)
Q Consensus 337 ~~a~~~L~~l~~~~~~---~~~~~~~~~~~~L~~ll~~~~~--~v~~~a~~~L~~l~ 388 (704)
+.+.-++.|+.....+ ...+...-........+.+.+. +-...++..+..+.
T Consensus 700 ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~ 756 (970)
T COG5656 700 EEVADALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLI 756 (970)
T ss_pred HHHHHHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHH
Confidence 7888899998754321 1111111122333344444333 44556666665554
No 197
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.69 E-value=0.2 Score=47.67 Aligned_cols=98 Identities=19% Similarity=0.254 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc-CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhh
Q 005282 166 GVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLK-FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLML 244 (704)
Q Consensus 166 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL 244 (704)
.....|+..|.-+|--+|+.+..+.....+..++.+|. ...+.++.+++.+|..+..+++.+...+-+.+|+..++.++
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 55677888999999889999999999999999999995 56789999999999999888999999999999999999999
Q ss_pred cC--CCHHHHHHHHHHHHHHh
Q 005282 245 RS--EDASVHFEAVGVIGNLV 263 (704)
Q Consensus 245 ~~--~~~~v~~~a~~~L~~l~ 263 (704)
++ .+.+++..++..|.-..
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYL 206 (257)
T ss_pred ccccccHHHhHHHHHHHHHHH
Confidence 85 46678777777765544
No 198
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.65 E-value=2.1 Score=46.79 Aligned_cols=236 Identities=15% Similarity=0.138 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCc
Q 005282 117 EVEKECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGI 195 (704)
Q Consensus 117 ~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i 195 (704)
-+..+|+.++.++. .++.... .++..|-.+++++.. .++..|...|..++...|..-. -.=
T Consensus 260 mV~~EaArai~~l~~~~~r~l~-----pavs~Lq~flssp~~--------~lRfaAvRtLnkvAm~~P~~v~-----~cN 321 (865)
T KOG1078|consen 260 MVIYEAARAIVSLPNTNSRELA-----PAVSVLQLFLSSPKV--------ALRFAAVRTLNKVAMKHPQAVT-----VCN 321 (865)
T ss_pred HHHHHHHHHHhhccccCHhhcc-----hHHHHHHHHhcCcHH--------HHHHHHHHHHHHHHHhCCcccc-----ccc
Confidence 68889999999888 3332211 156677777777765 8999999999999865554211 111
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCH--------------------------
Q 005282 196 PPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDA-------------------------- 249 (704)
Q Consensus 196 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~-------------------------- 249 (704)
.-|-.+..+.+..+-..|...|..-. ...+...+... +..++.=+.++..
T Consensus 322 ~elE~lItd~NrsIat~AITtLLKTG--~e~sv~rLm~q--I~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~ 397 (865)
T KOG1078|consen 322 LDLESLITDSNRSIATLAITTLLKTG--TESSVDRLMKQ--ISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLS 397 (865)
T ss_pred hhHHhhhcccccchhHHHHHHHHHhc--chhHHHHHHHH--HHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHH
Confidence 22333444444444444444333322 33333333322 2222222222222
Q ss_pred ---------HHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCC
Q 005282 250 ---------SVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGA 320 (704)
Q Consensus 250 ---------~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 320 (704)
+.+.....++..+...++..+. .++..|...+.+. +....+.+.|.-+-...+.. ..-.+.
T Consensus 398 ~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDc--e~~~i~~rILhlLG~EgP~a---~~Psky 467 (865)
T KOG1078|consen 398 NMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDC--EFTQIAVRILHLLGKEGPKA---PNPSKY 467 (865)
T ss_pred HHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhc--cchHHHHHHHHHHhccCCCC---CCcchh
Confidence 2333333333333322222111 2233333333221 11122222222222111110 001122
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcc
Q 005282 321 VRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLA 388 (704)
Q Consensus 321 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~ 388 (704)
+..+...+--.+..++..|..+|.++....+.. .......+.+++.+.+.++|..|...|.++-
T Consensus 468 ir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l----~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 468 IRFIYNRVILENAIVRAAAVSALAKFGAQDVVL----LPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCc----cccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 333333333455688999999999998443321 1223345678889999999999999999986
No 199
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=95.62 E-value=0.042 Score=49.42 Aligned_cols=91 Identities=21% Similarity=0.264 Sum_probs=69.2
Q ss_pred cEEEEEcCeEeehhHHHHhhcC--HHHHHhhcCC-C-CCCCCCceEcCCCCHHHHHHHHHHHhcCccc-cChhhHHHHHH
Q 005282 537 DVTFVVEGKQFYAHRICLLASS--DAFRAMFDGG-Y-KEKNAKDVEIPNIRWNVFELMMRFIYTGNVD-VSVDIAQDLLR 611 (704)
Q Consensus 537 d~~~~~~~~~~~~hk~iL~~~s--~~f~~~f~~~-~-~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~-~~~~~~~~ll~ 611 (704)
=|.+.++|+.|.....-|..+- +.+.+||.+. | .+.+.+--.+-|-++..|+.+|.|+-.|.+. .+.-++..+++
T Consensus 10 ~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~~~~s~i~~lgvLe 89 (302)
T KOG1665|consen 10 MVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDRSPKYFEPILNYLRDGQIPSLSDIDCLGVLE 89 (302)
T ss_pred hheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEccCchhhHHHHHHHhcCceeecCCccHHHHHH
Confidence 4677788888877666666554 3567888763 2 2222333444467899999999999999987 56678999999
Q ss_pred HHhhhChHhHHHHHHH
Q 005282 612 AADQYLLEGLKRLCEY 627 (704)
Q Consensus 612 ~A~~~~~~~l~~~c~~ 627 (704)
.|++|++-+|+++.+.
T Consensus 90 eArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 90 EARFFQILSLKDHLED 105 (302)
T ss_pred HhhHHhhHhHHhHHhh
Confidence 9999999999999887
No 200
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.45 E-value=0.33 Score=53.14 Aligned_cols=212 Identities=17% Similarity=0.158 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcH
Q 005282 117 EVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIP 196 (704)
Q Consensus 117 ~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 196 (704)
-++.++++.|..+....+....+...+++...+..|++.+. -+-.+|...+..+|.- ....++|
T Consensus 742 pik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkdeds--------yvyLnaI~gv~~Lcev--------y~e~il~ 805 (982)
T KOG4653|consen 742 PIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDS--------YVYLNAIRGVVSLCEV--------YPEDILP 805 (982)
T ss_pred cchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCc--------eeeHHHHHHHHHHHHh--------cchhhHH
Confidence 57888889999998544666667778899999999998776 6777888888888863 3346677
Q ss_pred HHHH-HhcCC---CHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 005282 197 PLVE-LLKFV---DVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKE 272 (704)
Q Consensus 197 ~L~~-ll~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 272 (704)
.+.. +.+.. .++.+.....++.++...-.+......+ -.+..++...++++...|..++..++++++........
T Consensus 806 dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd 884 (982)
T KOG4653|consen 806 DLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSD 884 (982)
T ss_pred HHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhH
Confidence 7777 34321 1344444556666665422222121111 34667778888888888999999999999654322222
Q ss_pred HHHcCCHHHHHHHhc-CCChhHHHHHHHHHHHHhccCCcchHHHHh---cCChHHHHHhhCC-CCHHHHHHHHHHHHHh
Q 005282 273 VILAGALQPVIGLLS-SSCSESKREAALLLGQFAAADSNSKVHIVQ---RGAVRPLIEMLQS-PDSQLKEMSAFALGRL 346 (704)
Q Consensus 273 ~~~~~~l~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~---~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l 346 (704)
.. ..++..++.+.. ++...+|+.|+..+..+..+.......+.. ......+....+. ++..++..++.++-.+
T Consensus 885 ~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei 962 (982)
T KOG4653|consen 885 FF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEI 962 (982)
T ss_pred HH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 11 123444444443 556677999999988887544332222221 1333444444443 4455666666666443
No 201
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.44 E-value=0.28 Score=46.77 Aligned_cols=99 Identities=15% Similarity=0.147 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcCC
Q 005282 67 AAKTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTGA 144 (704)
Q Consensus 67 ~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~ 144 (704)
...-|+++|.-+.- +|..+..+.+...+..++.+|..... +.++..++.+|..+. ++|.+.+.+-+.+|
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~---------~~i~~a~L~tLv~iLld~p~N~r~FE~~~G 177 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNP---------PAIQSACLDTLVCILLDSPENQRDFEELNG 177 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCC---------chHHHHHHHHHHHHHHcChHHHHHHHHhCC
Confidence 44556777777666 78998999999999999999955432 489999999998888 99999999999999
Q ss_pred cHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhh
Q 005282 145 LPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAH 180 (704)
Q Consensus 145 l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~ 180 (704)
+..++.++++...+ .+++..++..|.-...
T Consensus 178 l~~v~~llk~~~~~------~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 178 LSTVCSLLKSKSTD------RELRLKCIEFLYFYLM 207 (257)
T ss_pred HHHHHHHHcccccc------HHHhHHHHHHHHHHHc
Confidence 99999999987763 3888888888777664
No 202
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.43 E-value=0.043 Score=45.18 Aligned_cols=71 Identities=25% Similarity=0.316 Sum_probs=60.7
Q ss_pred ChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q 005282 236 ALPTLVLMLR-SEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAA 306 (704)
Q Consensus 236 ~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~ 306 (704)
.+..|+++|. +.|+.+...||.=|+.++...|..+..+-+.|+=..++.++.+++++++.+|+.++..+..
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 5788999994 5688889999999999999989988888788999999999999999999999999987753
No 203
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=95.27 E-value=2 Score=44.39 Aligned_cols=108 Identities=13% Similarity=0.192 Sum_probs=85.8
Q ss_pred HHHHh-CCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcc
Q 005282 86 SLIVD-NGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRA 163 (704)
Q Consensus 86 ~~l~~-~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~ 163 (704)
+.+++ ......|..+++.... |-+.+...|+.++..+. ..|..-..+.+.|.++.+++.+....-.++
T Consensus 99 rnl~D~s~L~~sL~~Il~n~~~-------FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s--- 168 (379)
T PF06025_consen 99 RNLIDSSSLLSSLKHILENPEV-------FGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPS--- 168 (379)
T ss_pred ccccchhhHHHHHHHHHhCccc-------cchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCc---
Confidence 34456 5556777788888765 66789999999999999 899999999999999999999982222222
Q ss_pred hhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCC
Q 005282 164 LSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFV 205 (704)
Q Consensus 164 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~ 205 (704)
.++....-.+|..+|- |....+.+.+.+.++.+++++.++
T Consensus 169 -~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 169 -SEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred -HHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHHHHHHhCCH
Confidence 2888888899999996 677778888899999999888753
No 204
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=95.22 E-value=5.2 Score=44.61 Aligned_cols=222 Identities=14% Similarity=0.050 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHhhcCC-hhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCc
Q 005282 117 EVEKECAFALGLLAVK-PEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGI 195 (704)
Q Consensus 117 ~v~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i 195 (704)
....++.+++...+.. +.+.. +.. ..+...+..+..... +.++..++.+++..|. ...+ .-...+++
T Consensus 465 ~Ll~Ra~~~i~~fs~~~~~~~~-~~~-~fl~~~v~~l~~~~~-------~~~ki~a~~~~~~~~~-~~vl--~~~~p~il 532 (1005)
T KOG2274|consen 465 FLLLRAFLTISKFSSSTVINPQ-LLQ-HFLNATVNALTMDVP-------PPVKISAVRAFCGYCK-VKVL--LSLQPMIL 532 (1005)
T ss_pred HHHHHHHHHHHHHHhhhccchh-HHH-HHHHHHHHhhccCCC-------CchhHHHHHHHHhccC-ceec--cccchHHH
Confidence 5555888888877722 22111 110 011222222222222 2567777787777773 1111 12345677
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc--CCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 005282 196 PPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR--SEDASVHFEAVGVIGNLVHSSPSIKKEV 273 (704)
Q Consensus 196 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 273 (704)
..|.++....+.++......+|...+.-+++... ..+..+.|.++.+.. +.||.+...+-.++..+++. ..+.. -
T Consensus 533 d~L~qlas~~s~evl~llmE~Ls~vv~~dpef~a-s~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~-~~~~g-~ 609 (1005)
T KOG2274|consen 533 DGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAA-SMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQI-AANYG-P 609 (1005)
T ss_pred HHHHHHcccccHHHHHHHHHHHHHHhccChhhhh-hhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH-HHhhc-c
Confidence 8888888888889999999999999875554333 334456676666543 67888887787787777752 11111 1
Q ss_pred HHcCCHHHHHHHhcCCC----hhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhh-CCCCHHHHHHHHHHHHHhhc
Q 005282 274 ILAGALQPVIGLLSSSC----SESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEML-QSPDSQLKEMSAFALGRLAQ 348 (704)
Q Consensus 274 ~~~~~l~~L~~ll~~~~----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~ 348 (704)
.....+|.++..+..+. ......++..|..+....+.-....+-.-++|++.+.. .++|..+...+..+|..+..
T Consensus 610 m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 610 MQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred hHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 23457899999998765 44566666777766665554433333344677777765 45778888889999998887
Q ss_pred CCchh
Q 005282 349 DTHNQ 353 (704)
Q Consensus 349 ~~~~~ 353 (704)
....+
T Consensus 690 ~~~eq 694 (1005)
T KOG2274|consen 690 VTLEQ 694 (1005)
T ss_pred cCHHH
Confidence 65443
No 205
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.18 E-value=2.5 Score=48.47 Aligned_cols=221 Identities=13% Similarity=0.115 Sum_probs=131.8
Q ss_pred hHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCc
Q 005282 116 HEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGI 195 (704)
Q Consensus 116 ~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i 195 (704)
..+|..+.++|..++..+.......+ -+..+.+.|.++...... ..+...+.+|..+....+.--..++...+.
T Consensus 668 ~~vQkK~yrlL~~l~~~~s~~~~~~q--~i~~I~n~L~ds~qs~~~----~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~ 741 (1176)
T KOG1248|consen 668 TKVQKKAYRLLEELSSSPSGEGLVEQ--RIDDIFNSLLDSFQSSSS----PAQASRLKCLKRLLKLLSAEHCDLIPKLIP 741 (1176)
T ss_pred HHHHHHHHHHHHHHhcCCchhhHHHH--HHHHHHHHHHHHHhccch----HHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 48999999999999955544333222 233444444443322211 566777777777765444111122222333
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcC------ChHHHHHhhc----CCCHHHHHHHHHHHHHHhcC
Q 005282 196 PPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECN------ALPTLVLMLR----SEDASVHFEAVGVIGNLVHS 265 (704)
Q Consensus 196 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~------~i~~L~~lL~----~~~~~v~~~a~~~L~~l~~~ 265 (704)
..++.+ +..+...++.+..+|..++. .....+.| .+..++..+. .+...+....+-++..+...
T Consensus 742 EvIL~~-Ke~n~~aR~~Af~lL~~i~~-----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e 815 (1176)
T KOG1248|consen 742 EVILSL-KEVNVKARRNAFALLVFIGA-----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE 815 (1176)
T ss_pred HHHHhc-ccccHHHHhhHHHHHHHHHH-----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH
Confidence 344444 77888899999999988872 11111111 2333333333 22333333335555666543
Q ss_pred ChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 005282 266 SPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGR 345 (704)
Q Consensus 266 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 345 (704)
.........-.+.+..+..+|.+.+.+++..|+..+..++...++....-....+++.+..+.+.....++..+-..|-.
T Consensus 816 ~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Llek 895 (1176)
T KOG1248|consen 816 FKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEK 895 (1176)
T ss_pred HhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 32222222334566677778889999999999999999987777655544445578888888887788888887777776
Q ss_pred hhc
Q 005282 346 LAQ 348 (704)
Q Consensus 346 l~~ 348 (704)
|+.
T Consensus 896 Lir 898 (1176)
T KOG1248|consen 896 LIR 898 (1176)
T ss_pred HHH
Confidence 664
No 206
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.16 E-value=0.77 Score=50.40 Aligned_cols=159 Identities=18% Similarity=0.203 Sum_probs=93.1
Q ss_pred hHhcCChHHHHHhhcC--------CCHHHHHHHHHHHHHHhcCChhhHHHHHHc--------CCHHHHHHHhcC----CC
Q 005282 231 IVECNALPTLVLMLRS--------EDASVHFEAVGVIGNLVHSSPSIKKEVILA--------GALQPVIGLLSS----SC 290 (704)
Q Consensus 231 ~~~~~~i~~L~~lL~~--------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--------~~l~~L~~ll~~----~~ 290 (704)
+...+++..++.+... +.-+....|+..|+-+..- |..+..+... .++..++..... -+
T Consensus 597 flkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~i-P~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~D 675 (1516)
T KOG1832|consen 597 FLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSI-PDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVD 675 (1516)
T ss_pred HHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEec-chHHHHHHHHHhhcccccCceEEEeecccccccccC
Confidence 4444556666665542 2245666777777666544 4444444321 134444433321 26
Q ss_pred hhHHHHHHHHHHHHhccCCcchHHHHhc-C---ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHH
Q 005282 291 SESKREAALLLGQFAAADSNSKVHIVQR-G---AVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLL 366 (704)
Q Consensus 291 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~---~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~ 366 (704)
++++..|+.+|.|+....++++...+.. | .-+.. .+=..+.....++...-.|+-..+ +.||..|+
T Consensus 676 pei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~-~l~~~~ks~~le~~l~~mw~~Vr~---------ndGIkiLl 745 (1516)
T KOG1832|consen 676 PEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRI-FLGAGTKSAKLEQVLRQMWEAVRG---------NDGIKILL 745 (1516)
T ss_pred HHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccc-cccCCCchHHHHHHHHHHHHHHhc---------CccHHHHH
Confidence 8899999999999987666665433211 0 00000 000112233444555555554443 46888999
Q ss_pred HhhcCCCh-----hHHHHHHHHHHHcccCCchhhHHHhh
Q 005282 367 KLLDSKNG-----SLQHNAAFALYGLADNEDNVADLVRV 400 (704)
Q Consensus 367 ~ll~~~~~-----~v~~~a~~~L~~l~~~~~~~~~l~~~ 400 (704)
++++-.+| .+|.-|+.+|.-|+++++.++.+.+-
T Consensus 746 ~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~tVrQIltKL 784 (1516)
T KOG1832|consen 746 KLLQYKNPPTTADCIRALACRVLLGLARDDTVRQILTKL 784 (1516)
T ss_pred HHHhccCCCCcHHHHHHHHHHHHhccccCcHHHHHHHhC
Confidence 99976543 58999999999999999988877763
No 207
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.10 E-value=0.23 Score=44.13 Aligned_cols=148 Identities=20% Similarity=0.175 Sum_probs=96.3
Q ss_pred CChHHHHhhccC-CCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHH
Q 005282 92 GAVPALVEHLQT-PPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRR 170 (704)
Q Consensus 92 g~i~~L~~lL~~-~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~ 170 (704)
..+..++..|.. .. ++++|..+.-++..+- +..++... .-.-..+-..+..... +-...
T Consensus 3 ~~l~~lL~~L~~~~~---------~~~~r~~a~v~l~k~l--~~~~~~~~-~~~~~~i~~~~~~~~~--------d~~i~ 62 (157)
T PF11701_consen 3 DELDTLLTSLDMLRQ---------PEEVRSHALVILSKLL--DAAREEFK-EKISDFIESLLDEGEM--------DSLII 62 (157)
T ss_dssp CCCCHHHHHHHCTTT---------SCCHHHHHHHHHHHHH--HHHHHHHH-HHHHHHHHHHHCCHHC--------CHHHH
T ss_pred HHHHHHHHHhcccCC---------CHhHHHHHHHHHHHHH--HHhHHHHH-HHHHHHHHHHHccccc--------hhHHH
Confidence 345556666654 22 2389999999999995 22222221 1122334444444443 45567
Q ss_pred HHHHHHHhhhcChhhhhhhh-ccCCcHHHHHHhc--CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc-C
Q 005282 171 AADAITNLAHENANIKTRVR-VEDGIPPLVELLK--FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR-S 246 (704)
Q Consensus 171 a~~~L~~l~~~~~~~~~~~~-~~~~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~ 246 (704)
++.++..+....++....+. ..|.++.++.++. +.+..++..++.+|..-|. +...|. .+...+++.|-+..+ +
T Consensus 63 ~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~-d~~~r~-~I~~~~~~~L~~~~~~~ 140 (157)
T PF11701_consen 63 AFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI-DKSCRT-FISKNYVSWLKELYKNS 140 (157)
T ss_dssp HHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT-SHHHHH-CCHHHCHHHHHHHTTTC
T ss_pred HHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc-cHHHHH-HHHHHHHHHHHHHHccc
Confidence 77788888766666655544 5677889999999 8889999999999998884 444444 455557899999995 5
Q ss_pred CCHH-HHHHHHHHHHH
Q 005282 247 EDAS-VHFEAVGVIGN 261 (704)
Q Consensus 247 ~~~~-v~~~a~~~L~~ 261 (704)
+++. ++..|+-+|+.
T Consensus 141 ~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 141 KDDSEIRVLAAVGLCK 156 (157)
T ss_dssp C-HH-CHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHhc
Confidence 5566 78888777764
No 208
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=95.10 E-value=0.46 Score=52.46 Aligned_cols=185 Identities=15% Similarity=0.147 Sum_probs=125.2
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhccCCchh-------------hHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 005282 197 PLVELLKFVDVKVQRAAAGALRTLAFKNDEN-------------KKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLV 263 (704)
Q Consensus 197 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-------------~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 263 (704)
.++.+|+. +++-..+..++.-+..+.+.. ++.+. ..++|.++....+.+..++..-+.+|.++.
T Consensus 819 klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~~t~~~~~K~~yl~~LshVl 895 (1030)
T KOG1967|consen 819 KLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKFETAPGSQKHNYLEALSHVL 895 (1030)
T ss_pred HHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHhccCCccchhHHHHHHHHHH
Confidence 45555553 344445555555554433321 22222 246888998888777788888888999888
Q ss_pred cCChhhHHHHHH--cCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCC---HHHHHH
Q 005282 264 HSSPSIKKEVIL--AGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPD---SQLKEM 338 (704)
Q Consensus 264 ~~~~~~~~~~~~--~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~---~~v~~~ 338 (704)
.+-|. +.+.. ...+|.|++.|.-++..++..+..++..+....+.....-+ .-+++.++.+=.+.+ ..+|..
T Consensus 896 ~~vP~--~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~-~Tlvp~lLsls~~~~n~~~~VR~~ 972 (1030)
T KOG1967|consen 896 TNVPK--QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHL-STLVPYLLSLSSDNDNNMMVVRED 972 (1030)
T ss_pred hcCCH--HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHH-hHHHHHHHhcCCCCCcchhHHHHH
Confidence 66554 22332 45788888999999999999999998887754444333221 235677777666544 678999
Q ss_pred HHHHHHHhhc-CCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHc
Q 005282 339 SAFALGRLAQ-DTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGL 387 (704)
Q Consensus 339 a~~~L~~l~~-~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l 387 (704)
|..+|..|.+ -+...-.......+..|.+.|.++..-+|+.|..+=.+.
T Consensus 973 ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen 973 ALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNW 1022 (1030)
T ss_pred HHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhh
Confidence 9999999998 455444455566778888999988888999998875443
No 209
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.08 E-value=1.2 Score=44.71 Aligned_cols=182 Identities=21% Similarity=0.194 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHhhcChhHHHHHH--hCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-C--ChhhHHHH
Q 005282 65 RAAAKTASHALVEFAKNEEIVSLIV--DNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-V--KPEHQQII 139 (704)
Q Consensus 65 ~~~~~~a~~~L~~l~~~~~~~~~l~--~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~--~~~~~~~~ 139 (704)
...+..++..+.++....-..+.+. ...++..+...++.+.. +-+..|+.+++-++ . .......+
T Consensus 57 ~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~----------~E~~lA~~~l~Ll~ltlg~g~~~~ei 126 (309)
T PF05004_consen 57 SSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKS----------EEQALAARALALLALTLGAGEDSEEI 126 (309)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCH----------HHHHHHHHHHHHHhhhcCCCccHHHH
Confidence 4567888888888765322222222 22457788888888765 55667878777777 2 22333444
Q ss_pred HHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhh---cChhhhhhhhccCCcHHHHH--Hhc----------C
Q 005282 140 VDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAH---ENANIKTRVRVEDGIPPLVE--LLK----------F 204 (704)
Q Consensus 140 ~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~~~~i~~L~~--ll~----------~ 204 (704)
+ ....|.|.+.+.+.... ...+..|+.+|+-++. ..+.... .-...+..+.. ..+ .
T Consensus 127 ~-~~~~~~L~~~l~d~s~~------~~~R~~~~~aLai~~fv~~~d~~~~~--~~~~~le~if~~~~~~~~~~~~~~~~~ 197 (309)
T PF05004_consen 127 F-EELKPVLKRILTDSSAS------PKARAACLEALAICTFVGGSDEEETE--ELMESLESIFLLSILKSDGNAPVVAAE 197 (309)
T ss_pred H-HHHHHHHHHHHhCCccc------hHHHHHHHHHHHHHHHhhcCChhHHH--HHHHHHHHHHHHHhcCcCCCcccccCC
Confidence 4 24678888888876542 2566777777777653 1111111 00011221111 111 1
Q ss_pred CCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 005282 205 VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHS 265 (704)
Q Consensus 205 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 265 (704)
+++.+...|+.+-+-|...-+...-.-.-...++.|..+|.+++.+||..|..+|+-|.+.
T Consensus 198 ~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 198 DDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred CccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 2457888888877777654444222222234589999999999999999999999888643
No 210
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.00 E-value=0.038 Score=33.51 Aligned_cols=29 Identities=24% Similarity=0.445 Sum_probs=25.6
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 005282 237 LPTLVLMLRSEDASVHFEAVGVIGNLVHS 265 (704)
Q Consensus 237 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 265 (704)
+|.+++++++++++||..|+.+|+.+++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 68899999999999999999999999753
No 211
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.90 E-value=1.4 Score=47.52 Aligned_cols=198 Identities=18% Similarity=0.199 Sum_probs=122.1
Q ss_pred cCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhh
Q 005282 276 AGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAG 355 (704)
Q Consensus 276 ~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 355 (704)
.+.+..++.-..+++..+|..++..|..+.. ....+...+-.++...+..-+.+..+.||..|..+|+.+-..+.+..
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d-~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee- 161 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSD-ENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEE- 161 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhc-cccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCc-
Confidence 3566677777778888999999999998875 33444444456778888888889999999999999999985432211
Q ss_pred HHhhCChHHHHHhh-cCCChhHHHHHHHHHHHcccCCchhhHHHhh-----CCcccccccccccccchHHHHHHHHHHHH
Q 005282 356 IAQDGGILPLLKLL-DSKNGSLQHNAAFALYGLADNEDNVADLVRV-----GGVQKLQDGEFTVQPTKDCVARTLKRLEE 429 (704)
Q Consensus 356 ~~~~~~~~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~-----g~i~~l~~~~~~~~~~~~~~~~~~~~~~~ 429 (704)
...+..+..++ .+++++||+.| |.+++-++...+.+++. |+...++ -...+.+.+.
T Consensus 162 ---~~v~n~l~~liqnDpS~EVRRaa---LsnI~vdnsTlp~IveRarDV~~anRrlv------------Y~r~lpkid~ 223 (892)
T KOG2025|consen 162 ---CPVVNLLKDLIQNDPSDEVRRAA---LSNISVDNSTLPCIVERARDVSGANRRLV------------YERCLPKIDL 223 (892)
T ss_pred ---ccHHHHHHHHHhcCCcHHHHHHH---HHhhccCcccchhHHHHhhhhhHHHHHHH------------HHHhhhhhhh
Confidence 12334556666 45788999876 55666667777666662 2222211 0011111111
Q ss_pred Hhhc--chhHHHHHHHhhccHHHHHHHHHHHHh--ccCCCccceeeecCCcHHHHHHHHh-hcchhhhhhHHHHHHHH
Q 005282 430 KVHG--RVLNHLLYLLRVADRAVKRRVTLALAH--LCAPDDCKTIFIDNNGLELLLGLLE-STSVKQREESSVALYKL 502 (704)
Q Consensus 430 ~~~~--~~~~~L~~ll~~~~~~v~~~a~~~L~~--l~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~L 502 (704)
...+ ..+..+-.-+.+.+..++.++..+|.+ | .+. .|-+.-+++-+. +.+.+++..|..+|...
T Consensus 224 r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~Wl--------~~~-dgni~ElL~~ldvsnss~vavk~lealf~~ 292 (892)
T KOG2025|consen 224 RSLSIDKRVLLLEWGLNDREFSVKGALVDAILSGWL--------RFS-DGNILELLERLDVSNSSEVAVKALEALFSG 292 (892)
T ss_pred hhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHh--------hhc-cccHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 1100 111222333455677888888887764 2 111 345555666665 45568999999999884
No 212
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=94.84 E-value=0.86 Score=45.65 Aligned_cols=170 Identities=16% Similarity=0.154 Sum_probs=114.6
Q ss_pred CCcHHHH-HHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh-hhH
Q 005282 193 DGIPPLV-ELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSP-SIK 270 (704)
Q Consensus 193 ~~i~~L~-~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~ 270 (704)
+.+..|+ ..+++.++.+|+.|+.+|+-+|.-+.+... ..++.+...+..+++.++..|+.++..+..... ...
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 3344333 677899999999999999999874443222 236677888877899999999999998874322 111
Q ss_pred HH-------HHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCC----CCHHHHHHH
Q 005282 271 KE-------VILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQS----PDSQLKEMS 339 (704)
Q Consensus 271 ~~-------~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~----~~~~v~~~a 339 (704)
.. ......++.+.+.+.+.+++++..++..++.+.-.+.-.- ...++..|+-+.-+ ++..++..-
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ~L 176 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQCL 176 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHHHH
Confidence 11 1123567788888888899999999999999875443222 12234444444322 356777777
Q ss_pred HHHHHHhhcCCchhhhHHhhCChHHHHHhhcC
Q 005282 340 AFALGRLAQDTHNQAGIAQDGGILPLLKLLDS 371 (704)
Q Consensus 340 ~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~ 371 (704)
...+-..+.........+....++.+..+...
T Consensus 177 ~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 177 SVFFPVYASSSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 77788888776655666667777777666644
No 213
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.82 E-value=3.6 Score=44.46 Aligned_cols=143 Identities=15% Similarity=0.077 Sum_probs=88.0
Q ss_pred HHHHHhhhccCCchhhHHHHHHHHHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHH
Q 005282 49 AQIDILNSKFSSDETDRAAAKTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALG 127 (704)
Q Consensus 49 ~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~ 127 (704)
..+..++.+.+..+....+..-..+.+..+-. +++. + +-.|.+..++....+.+. .||..++.+|+
T Consensus 44 r~vn~il~vkKresi~dRIl~fla~fv~sl~q~d~e~-D--lV~~~f~hlLRg~Eskdk----------~VRfrvlqila 110 (892)
T KOG2025|consen 44 RVVNYILLVKKRESIPDRILSFLARFVESLPQLDKEE-D--LVAGTFYHLLRGTESKDK----------KVRFRVLQILA 110 (892)
T ss_pred HHHHHheeeccCCCcHHHHHHHHHHHHHhhhccCchh-h--HHHHHHHHHHhcccCcch----------hHHHHHHHHHH
Confidence 34443333444444444344444444444443 2221 2 234567777777777765 89999999999
Q ss_pred hhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc-CCC
Q 005282 128 LLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLK-FVD 206 (704)
Q Consensus 128 ~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~ 206 (704)
.+.+....++..+-.+....+..-+.+..+ .++.+|+.+|..+-.+ +.. -+..++..+..+++ +++
T Consensus 111 ~l~d~~~eidd~vfn~l~e~l~~Rl~Drep--------~VRiqAv~aLsrlQ~d-~~d----ee~~v~n~l~~liqnDpS 177 (892)
T KOG2025|consen 111 LLSDENAEIDDDVFNKLNEKLLIRLKDREP--------NVRIQAVLALSRLQGD-PKD----EECPVVNLLKDLIQNDPS 177 (892)
T ss_pred HHhccccccCHHHHHHHHHHHHHHHhccCc--------hHHHHHHHHHHHHhcC-CCC----CcccHHHHHHHHHhcCCc
Confidence 999644333433434555666666666554 8999999999999732 211 11244667778887 678
Q ss_pred HHHHHHHHHHH
Q 005282 207 VKVQRAAAGAL 217 (704)
Q Consensus 207 ~~~~~~a~~~L 217 (704)
+++|+.|+..+
T Consensus 178 ~EVRRaaLsnI 188 (892)
T KOG2025|consen 178 DEVRRAALSNI 188 (892)
T ss_pred HHHHHHHHHhh
Confidence 99998876644
No 214
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=94.82 E-value=0.25 Score=54.49 Aligned_cols=150 Identities=16% Similarity=0.162 Sum_probs=107.1
Q ss_pred CCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhH--hcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhH
Q 005282 193 DGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIV--ECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIK 270 (704)
Q Consensus 193 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 270 (704)
.++|.|++.........+..-+.+|.++..+-|. +.+. -...+|.|++.|.-+|..++..++.++.-+....+...
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~--~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK--QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH--HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence 5678888888766666777777888888754443 2222 23468888999999999999999999988775543332
Q ss_pred HHHHHcCCHHHHHHHhcCCC---hhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 005282 271 KEVILAGALQPVIGLLSSSC---SESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGR 345 (704)
Q Consensus 271 ~~~~~~~~l~~L~~ll~~~~---~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 345 (704)
..-+ .-++|.++.+-.+.+ ..+|..|+.+|..+...-|...-......++..|++.|.++...+|+.|..+=.+
T Consensus 945 t~~~-~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 945 TEHL-STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQN 1021 (1030)
T ss_pred hHHH-hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhh
Confidence 2111 235677776666555 4568899999999987556555555666789999999999988999998876543
No 215
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=94.82 E-value=3 Score=40.55 Aligned_cols=207 Identities=13% Similarity=0.137 Sum_probs=146.5
Q ss_pred hhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchh----hHHhH-hcCChHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 005282 189 VRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDEN----KKLIV-ECNALPTLVLMLRSEDASVHFEAVGVIGNLV 263 (704)
Q Consensus 189 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~----~~~~~-~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 263 (704)
+...|.+..++..+...+-+.+..++.+..++-...-.. .+.+. ....+..++.--.. .+++...+..-+....
T Consensus 75 f~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrEci 153 (342)
T KOG1566|consen 75 FYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLRECI 153 (342)
T ss_pred HHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHHHH
Confidence 555788889999999888888888888888886422211 22222 23344444444211 3556555555565555
Q ss_pred cCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCC----hHHHHHhhCCCCHHHHHHH
Q 005282 264 HSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGA----VRPLIEMLQSPDSQLKEMS 339 (704)
Q Consensus 264 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~----i~~L~~ll~~~~~~v~~~a 339 (704)
.. +...+.+....-......++..+.-++...|..+...+...+......+...+. .+.--.++.+++.-++..+
T Consensus 154 rh-e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs 232 (342)
T KOG1566|consen 154 RH-EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQS 232 (342)
T ss_pred hh-HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHH
Confidence 44 566666777777888888888888899889998888877666555555554433 4446677889999999999
Q ss_pred HHHHHHhhcCCchhhhHHh----hCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHH
Q 005282 340 AFALGRLAQDTHNQAGIAQ----DGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADL 397 (704)
Q Consensus 340 ~~~L~~l~~~~~~~~~~~~----~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l 397 (704)
..+|+.+-.+.++...+.. ...+..++.+|+++...+|-.|.....-...+|..-+.+
T Consensus 233 ~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V 294 (342)
T KOG1566|consen 233 LKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPV 294 (342)
T ss_pred HHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchH
Confidence 9999999988777655433 356788899999999999999999998888766544333
No 216
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.81 E-value=0.11 Score=47.44 Aligned_cols=126 Identities=17% Similarity=0.170 Sum_probs=86.8
Q ss_pred CCCHHHHHHHHHHHHHhhcCCchhhhHHhh----------------CChHHHHHhhcC------CChhHHHHHHHHHHHc
Q 005282 330 SPDSQLKEMSAFALGRLAQDTHNQAGIAQD----------------GGILPLLKLLDS------KNGSLQHNAAFALYGL 387 (704)
Q Consensus 330 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~----------------~~~~~L~~ll~~------~~~~v~~~a~~~L~~l 387 (704)
++.......++..|+|++........+.+. ..+..|++++.. ....-....+.++.|+
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl 85 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL 85 (192)
T ss_pred CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence 344456677888999999877766544322 235566766643 2345667888999999
Q ss_pred ccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCcc
Q 005282 388 ADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDC 467 (704)
Q Consensus 388 ~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 467 (704)
++.++.++.++...-... .+..|+......+..-+..++.+|.|+|-+...
T Consensus 86 S~~~~gR~~~l~~~~~~~-----------------------------~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~ 136 (192)
T PF04063_consen 86 SQLPEGRQFFLDPQRYDG-----------------------------PLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDS 136 (192)
T ss_pred cCCHHHHHHHhCchhhhh-----------------------------HHHHHHHHhccCcHHHHHHHHHHHHHhhccHhH
Confidence 999999999987432110 245577777777777788899999999988888
Q ss_pred ceeeecCCcHHHHHHHH
Q 005282 468 KTIFIDNNGLELLLGLL 484 (704)
Q Consensus 468 ~~~l~~~~~i~~L~~ll 484 (704)
+..++..+++..|-.++
T Consensus 137 H~~LL~~~~~~iLp~LL 153 (192)
T PF04063_consen 137 HEWLLSDDEVDILPYLL 153 (192)
T ss_pred HHHhcCchhhhhHHHHH
Confidence 87777654444444443
No 217
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=94.77 E-value=1.4 Score=47.15 Aligned_cols=284 Identities=16% Similarity=0.114 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHHhhcC-hhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcC
Q 005282 66 AAAKTASHALVEFAKN-EEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTG 143 (704)
Q Consensus 66 ~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g 143 (704)
....-|+..+...... |+..+.. +..++.++++.+. .||.+|++.|-.+| +++++...+.
T Consensus 37 k~K~Laaq~I~kffk~FP~l~~~A-----i~a~~DLcEDed~----------~iR~~aik~lp~~ck~~~~~v~kva--- 98 (556)
T PF05918_consen 37 KEKRLAAQFIPKFFKHFPDLQEEA-----INAQLDLCEDEDV----------QIRKQAIKGLPQLCKDNPEHVSKVA--- 98 (556)
T ss_dssp HHHHHHHHHHHHHHCC-GGGHHHH-----HHHHHHHHT-SSH----------HHHHHHHHHGGGG--T--T-HHHHH---
T ss_pred HHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccH----------HHHHHHHHhHHHHHHhHHHHHhHHH---
Confidence 3566677777777775 7776655 8999999999866 99999999999999 7788877765
Q ss_pred CcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc---CCCHHHHHHHHHHHHHh
Q 005282 144 ALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLK---FVDVKVQRAAAGALRTL 220 (704)
Q Consensus 144 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~---~~~~~~~~~a~~~L~~l 220 (704)
..|+++|...+. .-...+-.+|..+...++. +.+..++..+. +++..+|+.++..|..=
T Consensus 99 --DvL~QlL~tdd~--------~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~k 160 (556)
T PF05918_consen 99 --DVLVQLLQTDDP--------VELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLREK 160 (556)
T ss_dssp --HHHHHHTT---H--------HHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHHHH
T ss_pred --HHHHHHHhcccH--------HHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHHHH
Confidence 688999987654 4455555666666654443 33455555554 57788999988877644
Q ss_pred ccCCc--hhh-HHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhc----CChhhHHHHHHcCCHHHHHHHh------c
Q 005282 221 AFKND--ENK-KLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVH----SSPSIKKEVILAGALQPVIGLL------S 287 (704)
Q Consensus 221 ~~~~~--~~~-~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~----~~~~~~~~~~~~~~l~~L~~ll------~ 287 (704)
...-+ ... ..=.+.-++..+-+.|.+-..+--.....+|..+-. ......+. +++.+.... .
T Consensus 161 l~~l~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qe-----Lv~ii~eQa~Ld~~f~ 235 (556)
T PF05918_consen 161 LKPLKPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQE-----LVDIIEEQADLDQPFD 235 (556)
T ss_dssp GGGS-TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHH-----HHHHHHHHHTTTS---
T ss_pred HhhCcHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHH-----HHHHHHHHhccCCCCC
Confidence 32111 011 011112234455566666555555555566666543 11222221 233333322 1
Q ss_pred CCChhHHHHHHHHHHH-H--hccCCcchH--HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCCh
Q 005282 288 SSCSESKREAALLLGQ-F--AAADSNSKV--HIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGI 362 (704)
Q Consensus 288 ~~~~~~~~~a~~~L~~-l--~~~~~~~~~--~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 362 (704)
..+++.....+.++.. + ......... ..+...++|.+-.+ +...+-..+.+++.++....... ....+
T Consensus 236 ~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~kvlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d---~~~~L 308 (556)
T PF05918_consen 236 PSDPESIDRLISCLRQALPFFSRGVSSSKFVNYMCEKVLPKLSDL----PEDRKLDLLKLLAELSPFCGAQD---ARQLL 308 (556)
T ss_dssp SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHHHHHHHTCCCTT---------HHHHHHHHHHHHHTT----T---HHHHH
T ss_pred CcCHHHHHHHHHHHHHhhHHhcCCCChHHHHHHHHHHhcCChhhC----ChHHHHHHHHHHHHHcCCCCccc---HHHHH
Confidence 2233433333333322 1 111111111 12223455544433 44566677888888886543221 11223
Q ss_pred HHHHHhhc----C--CCh----hHHHHHHHHHHHccc-CCchhhHH
Q 005282 363 LPLLKLLD----S--KNG----SLQHNAAFALYGLAD-NEDNVADL 397 (704)
Q Consensus 363 ~~L~~ll~----~--~~~----~v~~~a~~~L~~l~~-~~~~~~~l 397 (704)
+.+..+|. . ..+ ...+..+.++.+|+. .|+....+
T Consensus 309 ~~i~~~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p~~~~~l 354 (556)
T PF05918_consen 309 PSIFQLLKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSPNSLNFL 354 (556)
T ss_dssp HHHHHHHHTTS----------HHHHHHHHHHHHHHHTT-THHHH--
T ss_pred HHHHHHHHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCcchhhhH
Confidence 44444442 1 223 345566667777775 44434333
No 218
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=94.72 E-value=0.34 Score=48.56 Aligned_cols=150 Identities=17% Similarity=0.146 Sum_probs=99.8
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCC-cchHH-----
Q 005282 241 VLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADS-NSKVH----- 314 (704)
Q Consensus 241 ~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~----- 314 (704)
...+++.++.+|+.++.+|+-.+--+..... ..++.+...+..++.+++..|+.++..+...+. .....
T Consensus 33 ~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~ 107 (298)
T PF12719_consen 33 LPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDND 107 (298)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccC
Confidence 3677899999999999999998866543222 346777777777788899999999888764332 11111
Q ss_pred --HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHH-Hhhc---CCChhHHHHHHHHHHHcc
Q 005282 315 --IVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLL-KLLD---SKNGSLQHNAAFALYGLA 388 (704)
Q Consensus 315 --~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~-~ll~---~~~~~v~~~a~~~L~~l~ 388 (704)
.....+++.+.+.+.+.+++++..|+..++.|........ ....+..|+ ...+ ..+..++..-...+-..+
T Consensus 108 ~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~ 184 (298)
T PF12719_consen 108 ESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYA 184 (298)
T ss_pred ccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHH
Confidence 1224577888888988999999999999999875543222 112223322 2332 245667777777777777
Q ss_pred cCC-chhhHHH
Q 005282 389 DNE-DNVADLV 398 (704)
Q Consensus 389 ~~~-~~~~~l~ 398 (704)
... ++...+.
T Consensus 185 ~s~~~~Q~~l~ 195 (298)
T PF12719_consen 185 SSSPENQERLA 195 (298)
T ss_pred cCCHHHHHHHH
Confidence 644 4444443
No 219
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.71 E-value=0.23 Score=45.49 Aligned_cols=113 Identities=12% Similarity=0.107 Sum_probs=80.4
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhhHHHHHH----------------cCCHHHHHHHhcC------CChhHHHHHHHHHH
Q 005282 245 RSEDASVHFEAVGVIGNLVHSSPSIKKEVIL----------------AGALQPVIGLLSS------SCSESKREAALLLG 302 (704)
Q Consensus 245 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~----------------~~~l~~L~~ll~~------~~~~~~~~a~~~L~ 302 (704)
.+++......++.+|+|++..... ...+.+ ...+..|+..+.. ....-....+.++.
T Consensus 5 ~~~~~~~adl~~MLLsNlT~~~~~-~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~ 83 (192)
T PF04063_consen 5 TDPKSPLADLACMLLSNLTRSDSG-CEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLA 83 (192)
T ss_pred cCCCcchHHHHHHHHHHhccchHH-HHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHH
Confidence 345556677888999999876433 332332 1246677766654 23344778899999
Q ss_pred HHhccCCcchHHHHhc--CC--hHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhh
Q 005282 303 QFAAADSNSKVHIVQR--GA--VRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQD 359 (704)
Q Consensus 303 ~l~~~~~~~~~~~~~~--~~--i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 359 (704)
|++. .++.+..+.+. +. +..|+.++.+.+..-|..++.+|.|+|...+....+...
T Consensus 84 NlS~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~ 143 (192)
T PF04063_consen 84 NLSQ-LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSD 143 (192)
T ss_pred HhcC-CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCc
Confidence 9986 66777777765 34 778888888888878889999999999988877766654
No 220
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=94.70 E-value=0.88 Score=48.65 Aligned_cols=165 Identities=18% Similarity=0.188 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc
Q 005282 166 GVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR 245 (704)
Q Consensus 166 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~ 245 (704)
....-|+..+......-|...+ .++..+++++.+++..+|..|+..|..+|.++++....++ ..|+++|.
T Consensus 37 k~K~Laaq~I~kffk~FP~l~~-----~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kva-----DvL~QlL~ 106 (556)
T PF05918_consen 37 KEKRLAAQFIPKFFKHFPDLQE-----EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVA-----DVLVQLLQ 106 (556)
T ss_dssp HHHHHHHHHHHHHHCC-GGGHH-----HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHH-----HHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHH-----HHHHHHHh
Confidence 7788888888888877776655 5677899999999999999999999999987777766654 67999999
Q ss_pred CCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhc---CCChhHHHHHHHHHHHHhccCC-cchH--HHHhcC
Q 005282 246 SEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLS---SSCSESKREAALLLGQFAAADS-NSKV--HIVQRG 319 (704)
Q Consensus 246 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~---~~~~~~~~~a~~~L~~l~~~~~-~~~~--~~~~~~ 319 (704)
++++.....+=.+|..+...++. +.+..+...+. +++..+|+.++..|..-...-+ +... .=.+.-
T Consensus 107 tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~ 178 (556)
T PF05918_consen 107 TDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEF 178 (556)
T ss_dssp ---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHH
Confidence 99988888888888877755443 23444444443 5567788888877754332111 1111 112222
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 005282 320 AVRPLIEMLQSPDSQLKEMSAFALGRLAQ 348 (704)
Q Consensus 320 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 348 (704)
++..+.++|.+-..+--......|..+-.
T Consensus 179 i~~~ikkvL~DVTaeEF~l~m~lL~~lk~ 207 (556)
T PF05918_consen 179 IVDEIKKVLQDVTAEEFELFMSLLKSLKI 207 (556)
T ss_dssp HHHHHHHHCTT--HHHHHHHHHHHHTSGG
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhCcc
Confidence 44555566655333323344555555544
No 221
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=94.69 E-value=0.1 Score=38.88 Aligned_cols=67 Identities=13% Similarity=0.180 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhc-CCChhHHHHHHHHHHHcccCCchhhHHHhhCC
Q 005282 336 KEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLD-SKNGSLQHNAAFALYGLADNEDNVADLVRVGG 402 (704)
Q Consensus 336 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~ 402 (704)
.+.++|++++++..+.....+.+.+.++.++++.. ++...+|..|..+|.-++...+..+.+.+.|.
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~gW 71 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELGW 71 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcCC
Confidence 46789999999998887777777789999999985 56779999999999999999999988887764
No 222
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=94.68 E-value=0.72 Score=47.95 Aligned_cols=159 Identities=18% Similarity=0.219 Sum_probs=120.3
Q ss_pred HHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHH
Q 005282 95 PALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADA 174 (704)
Q Consensus 95 ~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~ 174 (704)
..+.+++.+++. ..+..|..-|..++.++.+...++...++..|.+++.+...... .++...++.+
T Consensus 86 ~~i~e~l~~~~~----------~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~----~~~L~~~L~a 151 (713)
T KOG2999|consen 86 KRIMEILTEGNN----------ISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMS----SELLSTSLRA 151 (713)
T ss_pred HHHHHHHhCCCc----------HHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchH----HHHHHHHHHH
Confidence 567888888876 77888999999999999999999999999999999998765322 1777788888
Q ss_pred HHHhhhcChhhhhhhhccCCcHHHHHHhc--CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHH
Q 005282 175 ITNLAHENANIKTRVRVEDGIPPLVELLK--FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVH 252 (704)
Q Consensus 175 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~ 252 (704)
+..+..+.-.... .+...++.....+.+ ..+..+...|+..|-++..+++..+..+.+.--+..|+..+...+..+.
T Consensus 152 f~elmehgvvsW~-~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~ 230 (713)
T KOG2999|consen 152 FSELMEHGVVSWE-SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQ 230 (713)
T ss_pred HHHHHhhceeeee-ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHH
Confidence 8777654332111 122233333334333 3456778899999999998788788888888889999999999999999
Q ss_pred HHHHHHHHHHhcCChh
Q 005282 253 FEAVGVIGNLVHSSPS 268 (704)
Q Consensus 253 ~~a~~~L~~l~~~~~~ 268 (704)
..|...+..+....++
T Consensus 231 ~~aial~nal~~~a~~ 246 (713)
T KOG2999|consen 231 TCAIALLNALFRKAPD 246 (713)
T ss_pred HHHHHHHHHHHhhCCh
Confidence 9988888877755443
No 223
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=94.58 E-value=0.16 Score=43.46 Aligned_cols=96 Identities=15% Similarity=0.183 Sum_probs=74.5
Q ss_pred ccEEEEEcCeEeehhHHHHhhcCHHH-HHhhcCCCC---CCCCCceEcCCCCHHHHHHHHHHHhcCccccChhhHHHHHH
Q 005282 536 SDVTFVVEGKQFYAHRICLLASSDAF-RAMFDGGYK---EKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVDIAQDLLR 611 (704)
Q Consensus 536 ~d~~~~~~~~~~~~hk~iL~~~s~~f-~~~f~~~~~---e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~ll~ 611 (704)
.=|.+-|||+.|-.-|.-|+..+.-| ..+...... ..+..--.+-|=+|..|..+|.|+-.|++.++.-.=..+|+
T Consensus 21 ~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklvl~~l~eeGvL~ 100 (210)
T KOG2715|consen 21 LWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLVLNKLSEEGVLE 100 (210)
T ss_pred EEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhhhhhhhhhccch
Confidence 44777889999999999999888444 555554321 22233445556788999999999999999988866678999
Q ss_pred HHhhhChHhHHHHHHHHHHh
Q 005282 612 AADQYLLEGLKRLCEYSIAQ 631 (704)
Q Consensus 612 ~A~~~~~~~l~~~c~~~l~~ 631 (704)
=|++|.++.|.....+.|.+
T Consensus 101 EAefyn~~~li~likd~i~d 120 (210)
T KOG2715|consen 101 EAEFYNDPSLIQLIKDRIQD 120 (210)
T ss_pred hhhccCChHHHHHHHHHHHH
Confidence 99999999999998888864
No 224
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=94.51 E-value=0.15 Score=51.03 Aligned_cols=87 Identities=23% Similarity=0.297 Sum_probs=68.9
Q ss_pred cEEEEEcCeEeehhHHHHhhcC--HHHHHhhcCCCCCCCCCc-eEcCCCCHHHHHHHHHHHhcCccccChhhHHHHHH-H
Q 005282 537 DVTFVVEGKQFYAHRICLLASS--DAFRAMFDGGYKEKNAKD-VEIPNIRWNVFELMMRFIYTGNVDVSVDIAQDLLR-A 612 (704)
Q Consensus 537 d~~~~~~~~~~~~hk~iL~~~s--~~f~~~f~~~~~e~~~~~-i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~ll~-~ 612 (704)
-|.+-|+|+.|...+.-|+-.. .||-+++++.+.-...+. ..+-|=+|+.|..+|.|+-||+++++......++- =
T Consensus 12 ~V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~~~g~~~~~llhdE 91 (465)
T KOG2714|consen 12 RVKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFIDRDPDLFAVILNLLRTGDLDASGVFPERLLHDE 91 (465)
T ss_pred eEEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEecCCchHHHHHHHHHhcCCCCCccCchhhhhhhh
Confidence 4778899999999999987554 699999998876433332 33345689999999999999999996666655555 8
Q ss_pred HhhhChHhHHH
Q 005282 613 ADQYLLEGLKR 623 (704)
Q Consensus 613 A~~~~~~~l~~ 623 (704)
|.||++..+.+
T Consensus 92 A~fYGl~~llr 102 (465)
T KOG2714|consen 92 AMFYGLTPLLR 102 (465)
T ss_pred hhhcCcHHHHH
Confidence 99999998877
No 225
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=94.23 E-value=0.22 Score=44.26 Aligned_cols=146 Identities=19% Similarity=0.226 Sum_probs=96.7
Q ss_pred CcHHHHHHhc--CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHH
Q 005282 194 GIPPLVELLK--FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKK 271 (704)
Q Consensus 194 ~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 271 (704)
.+..++..+. ...+++|..+.-++..+- +..++...+ -+-+.+-..+...+.+-...++.++..+....++...
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~ 79 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGS 79 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHH
Confidence 3445555555 356778888888888873 222332222 1223344445554555778888999999888777766
Q ss_pred HHH-HcCCHHHHHHHhc--CCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCC-CCHH-HHHHHHHHHHH
Q 005282 272 EVI-LAGALQPVIGLLS--SSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQS-PDSQ-LKEMSAFALGR 345 (704)
Q Consensus 272 ~~~-~~~~l~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~-v~~~a~~~L~~ 345 (704)
.+. ..|+++.++.++. ..+...+..++.+|..-|. .+.+...+...+++.|-...+. ++.. ++..|+-.|+.
T Consensus 80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~--d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI--DKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT--SHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 665 5788899999998 6777778888888877653 3444555666789999999964 5555 77777777664
No 226
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.22 E-value=0.074 Score=32.22 Aligned_cols=29 Identities=31% Similarity=0.408 Sum_probs=25.9
Q ss_pred HHHHHHHHhhcchhhhhhHHHHHHHHhhh
Q 005282 477 LELLLGLLESTSVKQREESSVALYKLATK 505 (704)
Q Consensus 477 i~~L~~ll~~~~~~~~~~a~~~L~~L~~~ 505 (704)
+|.++++++++++.||..|+.+|..+++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 68899999999999999999999999874
No 227
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=94.20 E-value=0.56 Score=46.95 Aligned_cols=171 Identities=20% Similarity=0.189 Sum_probs=92.4
Q ss_pred hhHHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhc--C--hhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCc
Q 005282 40 QQDLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAK--N--EEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYE 115 (704)
Q Consensus 40 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~--~--~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d 115 (704)
...+.....++++.+...++.... ..+.-|++++.-++- + .+. ..++ ....|.|.+++.+... .
T Consensus 77 ~d~v~~~~~tL~~~~~k~lkkg~~--~E~~lA~~~l~Ll~ltlg~g~~~-~ei~-~~~~~~L~~~l~d~s~--------~ 144 (309)
T PF05004_consen 77 PDFVEDRRETLLDALLKSLKKGKS--EEQALAARALALLALTLGAGEDS-EEIF-EELKPVLKRILTDSSA--------S 144 (309)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCH--HHHHHHHHHHHHHhhhcCCCccH-HHHH-HHHHHHHHHHHhCCcc--------c
Confidence 344455566677777666643332 123344444443322 1 222 2221 2457899999988765 3
Q ss_pred hHHHHHHHHHHHhhc--CChhhHHHHHHcCCcHHHHH--HHhhccCC--CCCcchhHHHHHHHHHHHHhhhcChhhhhhh
Q 005282 116 HEVEKECAFALGLLA--VKPEHQQIIVDTGALPHLVS--LLKQYKNG--GNSRALSGVIRRAADAITNLAHENANIKTRV 189 (704)
Q Consensus 116 ~~v~~~a~~~L~~l~--~~~~~~~~~~~~g~l~~L~~--lL~~~~~~--~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 189 (704)
+.+|..++.+|+-++ ...+.-...--...+..+.. ..+..... ....+...+...|+.+.+-|...-+...-.-
T Consensus 145 ~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~ 224 (309)
T PF05004_consen 145 PKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLED 224 (309)
T ss_pred hHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 467777777777766 22221111101112232222 12222110 1112234677788777776664444422222
Q ss_pred hccCCcHHHHHHhcCCCHHHHHHHHHHHHHhcc
Q 005282 190 RVEDGIPPLVELLKFVDVKVQRAAAGALRTLAF 222 (704)
Q Consensus 190 ~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 222 (704)
.-...++.|..+|.+++.++|..|..+|+-|..
T Consensus 225 ~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 225 LLEEALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 234568999999999999999999999988754
No 228
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.05 E-value=4.9 Score=41.60 Aligned_cols=232 Identities=16% Similarity=0.075 Sum_probs=117.5
Q ss_pred hhhhhhhhhhhhhhccCCC--cccccccCCchhh-HHHHHH-----HHHHHHhhhccCCchhhHHH-HHHHHHHHHHhhc
Q 005282 10 PARRSLKRKLEQDFEEKPD--RKVSIVESGATQQ-DLVQDI-----RAQIDILNSKFSSDETDRAA-AKTASHALVEFAK 80 (704)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~-----~~l~~~l~~~~~~~~~~~~~-~~~a~~~L~~l~~ 80 (704)
+-+|+..+-+.+...++.. .++++...+.... +..+.+ ..+..++.+..++..+.... +..-...+..+..
T Consensus 167 l~lqsa~e~~~~~sde~~~~w~qls~~~~h~~g~trlqr~m~~~~~~~~~~il~q~~ss~ts~~~~~ritd~Af~ael~~ 246 (533)
T KOG2032|consen 167 LILQSAEEAIQAVSDEVSRRWSQLSDNDIHRVGLTRLQRFMACVQDLEMGKILAQLLSSITSEKENGRITDIAFFAELKR 246 (533)
T ss_pred HHHHHhHHHHHHhhhcccchhhhcccCcccHHHHHHHHHHHHhhCCccHHHHHhhcccccchhcccchHHHHHHHHHHhC
Confidence 4455554444444444433 5566655554332 122222 23445566665443333222 2222233333333
Q ss_pred ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCC
Q 005282 81 NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGG 159 (704)
Q Consensus 81 ~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~ 159 (704)
.+... +.|.+..++..+.....++ +..++..|++.|++.+ .-|+-...-.. -.+..++.-|.++.+.
T Consensus 247 ~~~l~----~~~lL~s~~~~la~ka~dp------~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~- 314 (533)
T KOG2032|consen 247 PKELD----KTGLLGSVLLSLANKATDP------SAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNE- 314 (533)
T ss_pred ccccc----ccccHHHHHHHHHHhccCc------hhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCcc-
Confidence 22221 3455555544443322200 3489999999999999 43543322221 2344555555554431
Q ss_pred CCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCc---HHHHHHhcCCCHHHHHHHHHHHHHhccCCchhh-HHhHh--
Q 005282 160 NSRALSGVIRRAADAITNLAHENANIKTRVRVEDGI---PPLVELLKFVDVKVQRAAAGALRTLAFKNDENK-KLIVE-- 233 (704)
Q Consensus 160 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i---~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~-- 233 (704)
+++..++.+|..+...-. ..-+..+.+ -.+..+..+.+++++.++...+..|+.-..... ..+.+
T Consensus 315 ------~V~leam~~Lt~v~~~~~---~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v 385 (533)
T KOG2032|consen 315 ------EVQLEAMKCLTMVLEKAS---NDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQV 385 (533)
T ss_pred ------HHHHHHHHHHHHHHHhhh---hcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHH
Confidence 888889988888874222 112223333 345566778999999999888888764222222 22221
Q ss_pred cCChHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 005282 234 CNALPTLVLMLRSEDASVHFEAVGVIGNLV 263 (704)
Q Consensus 234 ~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 263 (704)
.+....++-.+.++++.+.. ||+.....+
T Consensus 386 ~k~~~~lllhl~d~~p~va~-ACr~~~~~c 414 (533)
T KOG2032|consen 386 KKRLAPLLLHLQDPNPYVAR-ACRSELRTC 414 (533)
T ss_pred HhccccceeeeCCCChHHHH-HHHHHHHhc
Confidence 12233444556677776654 444444443
No 229
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.00 E-value=14 Score=42.08 Aligned_cols=386 Identities=16% Similarity=0.102 Sum_probs=193.1
Q ss_pred HHHHHHHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc---CChhhHHHHHHc
Q 005282 67 AAKTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA---VKPEHQQIIVDT 142 (704)
Q Consensus 67 ~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~---~~~~~~~~~~~~ 142 (704)
.+.+.+..+..+-. +|++-...-+.--+|.++.-+..-+. .++...+.+|-.-. +.-..++
T Consensus 483 lqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfPs----------slqvkiLkilEyAVtvvncvPeqE----- 547 (2799)
T KOG1788|consen 483 LQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFPS----------SLQVKILKILEYAVTVVNCVPEQE----- 547 (2799)
T ss_pred hhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCCh----------HHHHHHHHHHHHHHhhhccCcHHH-----
Confidence 45667777777754 78886666666778888777777655 56655555543222 1111111
Q ss_pred CCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcC------------------
Q 005282 143 GALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKF------------------ 204 (704)
Q Consensus 143 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~------------------ 204 (704)
+-.|+-+|+.+-.+ .+....+.....+..-+...+..+.+-|.+..|...++.
T Consensus 548 --LlSLCvLLqqpIss-------alkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdqysgvsehyd 618 (2799)
T KOG1788|consen 548 --LLSLCVLLQQPISS-------ALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQYSGVSEHYD 618 (2799)
T ss_pred --HHHHHHHhcchhhH-------HHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcchhhhHHHHhh
Confidence 11344444443321 333333344444443344455555556666555544321
Q ss_pred ---------------------------C---CH--HHH---HHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCH
Q 005282 205 ---------------------------V---DV--KVQ---RAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDA 249 (704)
Q Consensus 205 ---------------------------~---~~--~~~---~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~ 249 (704)
+ .+ ++. ...-.+|..+..++.+++..+.+..++..++.++ -++
T Consensus 619 rnpss~sf~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpfl--ind 696 (2799)
T KOG1788|consen 619 RNPSSPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFL--IND 696 (2799)
T ss_pred cCCCCchhhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEee--ech
Confidence 0 00 011 1224466677777888888888888888877777 456
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCC--------C----hhHHHHHHHHHHHHhccCCcchHHHHh
Q 005282 250 SVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSS--------C----SESKREAALLLGQFAAADSNSKVHIVQ 317 (704)
Q Consensus 250 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--------~----~~~~~~a~~~L~~l~~~~~~~~~~~~~ 317 (704)
+-|...++++..+...++... ...-+-.++..|+++ + .+.......+++.+..-+...+..+.+
T Consensus 697 ehRSslLrivscLitvdpkqv----hhqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFge 772 (2799)
T KOG1788|consen 697 EHRSSLLRIVSCLITVDPKQV----HHQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGE 772 (2799)
T ss_pred HHHHHHHHHHHHHhccCcccc----cHHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhc
Confidence 667778888888776555421 112244555555542 1 122344555777776556666677888
Q ss_pred cCChHHHHHhhCC----------CCHHHHHHHHHHHH-----HhhcCCchhhhHHhhCChHHHHHhhcCCC---hhHHHH
Q 005282 318 RGAVRPLIEMLQS----------PDSQLKEMSAFALG-----RLAQDTHNQAGIAQDGGILPLLKLLDSKN---GSLQHN 379 (704)
Q Consensus 318 ~~~i~~L~~ll~~----------~~~~v~~~a~~~L~-----~l~~~~~~~~~~~~~~~~~~L~~ll~~~~---~~v~~~ 379 (704)
.++...|...|.. +|.-+-..-...|. .++.++.++.++...-.-+.+..+|..+. -+.-+.
T Consensus 773 atGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavcenasNrmklhtvITsqtftsLLresgllcvnler~ 852 (2799)
T KOG1788|consen 773 ATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERH 852 (2799)
T ss_pred cccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHH
Confidence 8888777776631 12111111122222 23355666655443333344445543321 111112
Q ss_pred HHHHHHHcc----cCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHH
Q 005282 380 AAFALYGLA----DNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVT 455 (704)
Q Consensus 380 a~~~L~~l~----~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~ 455 (704)
....|..++ ..+.-..+.....-+..+-+..+...... ......-+..+..+++..++..+-...+..+..-.
T Consensus 853 viqlllElalevlvppfLtSEsaAcaeVfelednifavntPs---Gqfnpdk~~iynagavRvlirslLlnypK~qlefl 929 (2799)
T KOG1788|consen 853 VIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPS---GQFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFL 929 (2799)
T ss_pred HHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCC---CCcCchHhhhcccchhHHHHHHHHhhChHHHHHHH
Confidence 222222221 01111111111001111111100000000 00000011123445667777777777888888888
Q ss_pred HHHHhccCC-CccceeeecCCcHHHHHHHHh
Q 005282 456 LALAHLCAP-DDCKTIFIDNNGLELLLGLLE 485 (704)
Q Consensus 456 ~~L~~l~~~-~~~~~~l~~~~~i~~L~~ll~ 485 (704)
..+..+++. +.++..+...|.++.|++.+.
T Consensus 930 ~lleSlaRaspfnaelltS~gcvellleIiy 960 (2799)
T KOG1788|consen 930 NLLESLARASPFNAELLTSAGCVELLLEIIY 960 (2799)
T ss_pred HHHHHHhhcCCCchhhhhcccHHHHHHHHhh
Confidence 888888774 444444444577888777765
No 230
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=93.95 E-value=2.3 Score=42.67 Aligned_cols=106 Identities=10% Similarity=-0.012 Sum_probs=67.3
Q ss_pred chHHHHHHHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhh-hhhcc
Q 005282 115 EHEVEKECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKT-RVRVE 192 (704)
Q Consensus 115 d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~ 192 (704)
|..+..+|..+|+|+. .++..++...+...+..+++.+.......... ++.-.-+..|.-+..-....|. .+...
T Consensus 110 d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~---~~~~~dlrLLflltale~~~Rsql~~~l 186 (532)
T KOG4464|consen 110 DMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPK---DSSIFDLRLLFLLTALETDHRSQLIAEL 186 (532)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCc---cchhhHHHHHHHHHHhhHHHHHHHHHHh
Confidence 4589999999999999 89999999999988888888876543211100 2222223333333322333343 45667
Q ss_pred CCcHHHHHHhcCC---------C---H---HHHHHHHHHHHHhccC
Q 005282 193 DGIPPLVELLKFV---------D---V---KVQRAAAGALRTLAFK 223 (704)
Q Consensus 193 ~~i~~L~~ll~~~---------~---~---~~~~~a~~~L~~l~~~ 223 (704)
+|++.+.+++.+. . | .....++.++.|+..+
T Consensus 187 ~Gl~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~ 232 (532)
T KOG4464|consen 187 LGLELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCD 232 (532)
T ss_pred cccHHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeec
Confidence 8999999998731 1 1 3344566667777653
No 231
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=93.95 E-value=3.5 Score=41.52 Aligned_cols=143 Identities=14% Similarity=0.068 Sum_probs=83.6
Q ss_pred HHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHh--hccCCCCCcchhHHHHHHH
Q 005282 95 PALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLK--QYKNGGNSRALSGVIRRAA 172 (704)
Q Consensus 95 ~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~--~~~~~~~~~~~~~~~~~a~ 172 (704)
..++.+|..+.+ ...+..++..+.-|+.+...-+.+.....++.|+.+-+ ....+.+.-++.++...++
T Consensus 48 e~i~~Vle~~~p---------~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~Esl 118 (532)
T KOG4464|consen 48 ERIFEVLENGEP---------LTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESL 118 (532)
T ss_pred HHHHHHHhcCCC---------chhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHH
Confidence 445555555542 13444556666666644433332222223344444332 2222233334568999999
Q ss_pred HHHHHhhhcChhhhhhhhccCCcHHHHHHhcCC-----CHHHHHHHHHHHHHhccCCchhhHH-hHhcCChHHHHHhhcC
Q 005282 173 DAITNLAHENANIKTRVRVEDGIPPLVELLKFV-----DVKVQRAAAGALRTLAFKNDENKKL-IVECNALPTLVLMLRS 246 (704)
Q Consensus 173 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-----~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~~i~~L~~lL~~ 246 (704)
.+|.|+...++.++....+......+++.+... -..+...-++.|.-+..-....|.. +.+.++++.+.+.+.+
T Consensus 119 KCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led 198 (532)
T KOG4464|consen 119 KCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLED 198 (532)
T ss_pred HHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhc
Confidence 999999999999999999988888777766521 1123333344444443333455544 4688899999998873
No 232
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=93.91 E-value=1.2 Score=50.11 Aligned_cols=214 Identities=15% Similarity=0.151 Sum_probs=133.1
Q ss_pred hhccCCcHHHHHHhcC-----CCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc----CCC----HHHHHHH
Q 005282 189 VRVEDGIPPLVELLKF-----VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR----SED----ASVHFEA 255 (704)
Q Consensus 189 ~~~~~~i~~L~~ll~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~----~~~----~~v~~~a 255 (704)
+.+.|++..++.++.+ ....+....+..|..++. -+.+|+.+.+.|+++.|+..+. .+. +.+.+..
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L 191 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL 191 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence 3456889999988874 445777788888888886 7999999999999999998775 334 6777777
Q ss_pred HHHHHHHhcCChhhHH----HHHHc--------CCHHHHHHHhcCC----ChhHHHHHHHHHHHHhccCCcchHHHHhcC
Q 005282 256 VGVIGNLVHSSPSIKK----EVILA--------GALQPVIGLLSSS----CSESKREAALLLGQFAAADSNSKVHIVQRG 319 (704)
Q Consensus 256 ~~~L~~l~~~~~~~~~----~~~~~--------~~l~~L~~ll~~~----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 319 (704)
+.++..+......... ..... .-+..++..+.++ ++.+....+++|.+++.++++....+++.
T Consensus 192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~- 270 (802)
T PF13764_consen 192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH- 270 (802)
T ss_pred HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH-
Confidence 7777776643211100 00011 1255666666543 57778888999999998777665555432
Q ss_pred ChHHHHHhhC---CCCHHHHHHHHHHHHHhhcCC-------chhhhHHhhCChHHHHHhhcCC--------Chh------
Q 005282 320 AVRPLIEMLQ---SPDSQLKEMSAFALGRLAQDT-------HNQAGIAQDGGILPLLKLLDSK--------NGS------ 375 (704)
Q Consensus 320 ~i~~L~~ll~---~~~~~v~~~a~~~L~~l~~~~-------~~~~~~~~~~~~~~L~~ll~~~--------~~~------ 375 (704)
+.+.+++=+ ....+- ...+..++.++.+- .-+..+++.|.+...++.+... +++
T Consensus 271 -F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~ 348 (802)
T PF13764_consen 271 -FKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLS 348 (802)
T ss_pred -HHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhc
Confidence 122222111 111111 22355666665431 2245678889988888777432 222
Q ss_pred --HHHHHHHHHHHcccCCchhhHHHhhCCcccc
Q 005282 376 --LQHNAAFALYGLADNEDNVADLVRVGGVQKL 406 (704)
Q Consensus 376 --v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l 406 (704)
-...++..|.-|+......+.++..++++.+
T Consensus 349 ~psLp~iL~lL~GLa~gh~~tQ~~~~~~~l~~l 381 (802)
T PF13764_consen 349 RPSLPYILRLLRGLARGHEPTQLLIAEQLLPLL 381 (802)
T ss_pred CCcHHHHHHHHHHHHhcCHHHHHHHHhhHHHHH
Confidence 2346777888888766655566666666544
No 233
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.90 E-value=1.5 Score=48.38 Aligned_cols=178 Identities=13% Similarity=0.115 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcC
Q 005282 65 RAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTG 143 (704)
Q Consensus 65 ~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g 143 (704)
..++-.++..|..+....+....+...+++...+..|++.++ .|...|+..+..|| ..| ..
T Consensus 741 vpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkdeds----------yvyLnaI~gv~~Lcevy~--------e~ 802 (982)
T KOG4653|consen 741 VPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDS----------YVYLNAIRGVVSLCEVYP--------ED 802 (982)
T ss_pred ccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCc----------eeeHHHHHHHHHHHHhcc--------hh
Confidence 346777888888888765555566677899999999999987 78899999888888 333 34
Q ss_pred CcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC
Q 005282 144 ALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFK 223 (704)
Q Consensus 144 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 223 (704)
.+|.+...-.+....... +.+...-.++.++...-.+....... -.+...+...++++...|..++..++++|.-
T Consensus 803 il~dL~e~Y~s~k~k~~~----d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~ 877 (982)
T KOG4653|consen 803 ILPDLSEEYLSEKKKLQT----DYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQL 877 (982)
T ss_pred hHHHHHHHHHhcccCCCc----cceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHH
Confidence 667777744433322211 33333335555555322222111111 3345566667777888899999999999862
Q ss_pred Cchh-hHHhHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCh
Q 005282 224 NDEN-KKLIVECNALPTLVLMLR-SEDASVHFEAVGVIGNLVHSSP 267 (704)
Q Consensus 224 ~~~~-~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~ 267 (704)
.... ...+. .++..++.+.+ ++..-+|+.|+..+..+..+..
T Consensus 878 ~a~~vsd~~~--ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg 921 (982)
T KOG4653|consen 878 LAFQVSDFFH--EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTG 921 (982)
T ss_pred HhhhhhHHHH--HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccc
Confidence 2211 11111 12444555554 5678899999999999886543
No 234
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=93.86 E-value=0.049 Score=53.61 Aligned_cols=139 Identities=17% Similarity=0.259 Sum_probs=109.6
Q ss_pred cEEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhcCccccCh--hhHHHHHHHHh
Q 005282 537 DVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSV--DIAQDLLRAAD 614 (704)
Q Consensus 537 d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~--~~~~~ll~~A~ 614 (704)
+..+..+...+++|+.+|...|+.|..+....-..+..+.+....++...+..+.+|+|.. .+--+ .....++.+..
T Consensus 28 ~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~-~ek~e~~~~~ihll~~~~ 106 (319)
T KOG1778|consen 28 VEIVTDVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKILGVPCKAVNVFIRFLYSS-LEKHEMVFFDIHLLALSH 106 (319)
T ss_pred hhhhhhhhhhhHHHHhcccccchHHHHHHhhhcchhhhhcceeecccccccchhhhhhccc-hhhhHHHHHHHHHHhhhh
Confidence 3444445678999999999999999887765533333456666778888999999999988 33222 24567778878
Q ss_pred hhChHhHHHHHHHHHHh-hCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCChhhhc
Q 005282 615 QYLLEGLKRLCEYSIAQ-IISVENIMLMYELSEAYNATTLKQSCILFILEKFDKMRNKPWFFR 676 (704)
Q Consensus 615 ~~~~~~l~~~c~~~l~~-~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~ 676 (704)
.|.++..+..|...+.. .++..+++..+..+..|..+.|...+.+.+...|...+.++.+..
T Consensus 107 ~~~v~~~~~d~~~~~~~~~~~~r~~flvl~~~~~~~~~~lr~a~hss~~~~~~~H~~t~~~~~ 169 (319)
T KOG1778|consen 107 VYVVPQPKADCDPILECGLFDKRNVFLVLQLAEHCDFSDLRRAKHSSIMLLFDLHLQTEKWFA 169 (319)
T ss_pred hhhccCccccCCccccchhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcccCcee
Confidence 99999999998877754 778889999999999999999999999999999999988665543
No 235
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=93.75 E-value=0.32 Score=36.28 Aligned_cols=67 Identities=21% Similarity=0.361 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcC
Q 005282 68 AKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTG 143 (704)
Q Consensus 68 ~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g 143 (704)
.+.++|++.+++..+.-...+-+.++++.++++....+. ..+|-.|.++|+-++.+.+..+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v---------~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPV---------LSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCc---------cchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 577899999999988777777778999999999998765 4799999999999999988888877665
No 236
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=93.65 E-value=0.61 Score=50.18 Aligned_cols=188 Identities=15% Similarity=0.154 Sum_probs=130.5
Q ss_pred hccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhh
Q 005282 190 RVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSI 269 (704)
Q Consensus 190 ~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 269 (704)
...+++|.|+++++..|..+|..-+.-+-+... .....+.+..++|.+...+.+.++.+|+.++.++..++.. .
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~---~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~k---L 400 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYID---HLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPK---L 400 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhh---hcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhh---h
Confidence 566889999999999999999877776666553 3344566777899999999999999999999999998832 2
Q ss_pred HHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q 005282 270 KKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQD 349 (704)
Q Consensus 270 ~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 349 (704)
.........+..+-.+-.+.+..++.+..-+|+.++...... ..+.-.+..+.+.++++-...|..+.++++.....
T Consensus 401 ~~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~---~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~ 477 (690)
T KOG1243|consen 401 SKRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAAS---VRKRVLASAFTRALKDPFVPARKAGVLALAATQEY 477 (690)
T ss_pred chhhhcHHHHHHHHhhCccccCcccccceeeecccccccchh---hhccccchhhhhhhcCCCCCchhhhhHHHhhcccc
Confidence 222333344555555555666778888888888876432221 12223455566667777777888888888776654
Q ss_pred CchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcc
Q 005282 350 THNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLA 388 (704)
Q Consensus 350 ~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~ 388 (704)
.+.. -+....++.++-+.-+.+..++..|..++...-
T Consensus 478 ~~~~--~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl 514 (690)
T KOG1243|consen 478 FDQS--EVANKILPSLVPLTVDPEKTVRDTAEKAIRQFL 514 (690)
T ss_pred cchh--hhhhhccccccccccCcccchhhHHHHHHHHHH
Confidence 4322 133345566777777778888888888776654
No 237
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.43 E-value=0.62 Score=52.97 Aligned_cols=162 Identities=17% Similarity=0.138 Sum_probs=116.8
Q ss_pred cHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc-CCCHHHHHHHHHHHHHhccC
Q 005282 145 LPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLK-FVDVKVQRAAAGALRTLAFK 223 (704)
Q Consensus 145 l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~ 223 (704)
.|.++...+.+...+ +++++..|.-+|+.++--+.+... .-+|.|+..+. +++|.+|.++.-+++.++..
T Consensus 921 ~piv~e~c~n~~~~s----dp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~ 991 (1251)
T KOG0414|consen 921 APIVVEGCRNPGLFS----DPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVR 991 (1251)
T ss_pred HHHHHHHhcCCCcCC----CHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhh
Confidence 445555554433222 358999999999998754443322 45788999998 89999999999999999864
Q ss_pred CchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHH
Q 005282 224 NDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQ 303 (704)
Q Consensus 224 ~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~ 303 (704)
.|...+. .-+.|..-|++.++.+|+.|+..|.+|...+ .+.-.|.+.-+..++.+++.+++..|=...-.
T Consensus 992 fpnlie~-----~T~~Ly~rL~D~~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~E 1061 (1251)
T KOG0414|consen 992 FPNLIEP-----WTEHLYRRLRDESPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKE 1061 (1251)
T ss_pred cccccch-----hhHHHHHHhcCccHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 4433332 3456888889999999999999999997542 33447899999999999999988877777777
Q ss_pred HhccCCcchHHHHhcCChHHHHHhhCCC
Q 005282 304 FAAADSNSKVHIVQRGAVRPLIEMLQSP 331 (704)
Q Consensus 304 l~~~~~~~~~~~~~~~~i~~L~~ll~~~ 331 (704)
++... +. + .+++|-++.-|.++
T Consensus 1062 ls~k~--n~--i--ynlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1062 LSSKG--NT--I--YNLLPDILSRLSNG 1083 (1251)
T ss_pred hhhcc--cc--h--hhhchHHHHhhccC
Confidence 76432 11 1 34667777777665
No 238
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.42 E-value=21 Score=42.55 Aligned_cols=140 Identities=16% Similarity=0.222 Sum_probs=98.5
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHH
Q 005282 236 ALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHI 315 (704)
Q Consensus 236 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 315 (704)
.+..++..++.+...+|..|++||.++.+.++... ....+-..+-.-+.+....||..|+..++......++.....
T Consensus 817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL---~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qy 893 (1692)
T KOG1020|consen 817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSVL---SRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQY 893 (1692)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhh---cCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHH
Confidence 57788888998899999999999999998766432 223334444555667778899999999998876666554433
Q ss_pred HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhh---cCCChhHHHHHHHHHHHcc
Q 005282 316 VQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLL---DSKNGSLQHNAAFALYGLA 388 (704)
Q Consensus 316 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll---~~~~~~v~~~a~~~L~~l~ 388 (704)
...+..-..+....||+.+...+..+|...++-..+. ....+++ ++....+++-+..++.++=
T Consensus 894 -----Y~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~-----~~cakmlrRv~DEEg~I~kLv~etf~klW 959 (1692)
T KOG1020|consen 894 -----YDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIV-----DMCAKMLRRVNDEEGNIKKLVRETFLKLW 959 (1692)
T ss_pred -----HHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHH-----HHHHHHHHHhccchhHHHHHHHHHHHHHh
Confidence 4556666677888999999999999997766544333 2233333 3344447777777776663
No 239
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=93.22 E-value=8.9 Score=37.42 Aligned_cols=204 Identities=14% Similarity=0.192 Sum_probs=142.9
Q ss_pred HHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhh----h-hhccCCcHHHHHHhcCCCHHHHH
Q 005282 137 QIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKT----R-VRVEDGIPPLVELLKFVDVKVQR 211 (704)
Q Consensus 137 ~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~----~-~~~~~~i~~L~~ll~~~~~~~~~ 211 (704)
..+.++|.++.+++.+.+-.- +-+..++....++-.-....+. . ......+..|+.--.. .+++..
T Consensus 73 qef~~~~~l~~lI~~l~~l~f--------E~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL 143 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLEF--------ESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIAL 143 (342)
T ss_pred HHHHhCCchHHHHHhhhcccc--------hhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHH
Confidence 566778999999999987765 6677777777777532222221 1 1112333444443111 477777
Q ss_pred HHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCC----HHHHHHHhc
Q 005282 212 AAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGA----LQPVIGLLS 287 (704)
Q Consensus 212 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~----l~~L~~ll~ 287 (704)
++...+..+.. .+...+.+....-......++..++-++...|..+...+..........+..... .+.--.++.
T Consensus 144 ~cg~mlrEcir-he~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~ 222 (342)
T KOG1566|consen 144 TCGNMLRECIR-HEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLR 222 (342)
T ss_pred HHHHHHHHHHh-hHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhc
Confidence 77777777775 5666677777777888888888888899999999998887665555555554332 444667888
Q ss_pred CCChhHHHHHHHHHHHHhccCCcchHHHHh----cCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCc
Q 005282 288 SSCSESKREAALLLGQFAAADSNSKVHIVQ----RGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTH 351 (704)
Q Consensus 288 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~----~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 351 (704)
+.+--+++.+..+++.+.. +..+...+.. ..-+..++.+|+.++..+|-.|....+-...++.
T Consensus 223 s~Nyvtkrqs~kllg~lll-dr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpn 289 (342)
T KOG1566|consen 223 SENYVTKRQSLKLLGELLL-DRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPN 289 (342)
T ss_pred ccceehHHHHHHhHHHHHh-CCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCC
Confidence 9888899999999999875 3333333322 3568899999999999999999999888887654
No 240
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=93.09 E-value=6.8 Score=41.27 Aligned_cols=155 Identities=17% Similarity=0.134 Sum_probs=99.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHh-hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHH
Q 005282 197 PLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLM-LRSEDASVHFEAVGVIGNLVHSSPSIKKEVIL 275 (704)
Q Consensus 197 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 275 (704)
.+-+++.+.++-+|.....+++.--.+. -..+++..+++. ..+.+.+||+.|+-+|+-+|..++.
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~GT-------gn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~------- 585 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVGT-------GNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD------- 585 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhcC-------CcchhHhhhheeecccCchHHHHHHHHheeeeEecCcc-------
Confidence 4566777778777776665544332111 134567777776 6688999999999999998866543
Q ss_pred cCCHHHHHHHhc-CCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhh
Q 005282 276 AGALQPVIGLLS-SSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQA 354 (704)
Q Consensus 276 ~~~l~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 354 (704)
.+...+++|. +-+..+|.-.+.+|+-.|.+...+ -++..|-.++.+...-+|..|+-+++.+......+-
T Consensus 586 --~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~-------~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~L 656 (926)
T COG5116 586 --LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK-------VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPEL 656 (926)
T ss_pred --hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH-------HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCccc
Confidence 4556666665 456778888888888777643332 245667777788888899999999888763222111
Q ss_pred hHHhhCChHHHHHhhcCCCh
Q 005282 355 GIAQDGGILPLLKLLDSKNG 374 (704)
Q Consensus 355 ~~~~~~~~~~L~~ll~~~~~ 374 (704)
.---.+..+.+.+++.++..
T Consensus 657 np~v~~I~k~f~~vI~~Khe 676 (926)
T COG5116 657 NPNVKRIIKKFNRVIVDKHE 676 (926)
T ss_pred ChhHHHHHHHHHHHHhhhhH
Confidence 11112344556666655443
No 241
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.06 E-value=1.4 Score=50.35 Aligned_cols=163 Identities=21% Similarity=0.250 Sum_probs=120.8
Q ss_pred ChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHH
Q 005282 93 AVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRA 171 (704)
Q Consensus 93 ~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a 171 (704)
+.|.++++...+.. +-||+++..|.-+|+.+. -+.++. ...+|.|+..+...+. +-++.++
T Consensus 920 f~piv~e~c~n~~~------~sdp~Lq~AAtLaL~klM~iSa~fc-----es~l~llftimeksp~-------p~IRsN~ 981 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGL------FSDPELQAAATLALGKLMCISAEFC-----ESHLPLLFTIMEKSPS-------PRIRSNL 981 (1251)
T ss_pred HHHHHHHHhcCCCc------CCCHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhcCCC-------ceeeecc
Confidence 46777777766543 236799999999999998 554443 3356899999986654 3788899
Q ss_pred HHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHH
Q 005282 172 ADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASV 251 (704)
Q Consensus 172 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v 251 (704)
+-+++.++..-|..- ...-+.|...|.+.++.+|+.|+.+|..|.. ..++.-.|.++.+..++.++++.+
T Consensus 982 VvalgDlav~fpnli-----e~~T~~Ly~rL~D~~~~vRkta~lvlshLIL-----ndmiKVKGql~eMA~cl~D~~~~I 1051 (1251)
T KOG0414|consen 982 VVALGDLAVRFPNLI-----EPWTEHLYRRLRDESPSVRKTALLVLSHLIL-----NDMIKVKGQLSEMALCLEDPNAEI 1051 (1251)
T ss_pred hheccchhhhccccc-----chhhHHHHHHhcCccHHHHHHHHHHHHHHHH-----hhhhHhcccHHHHHHHhcCCcHHH
Confidence 999999986444322 2345678888889999999999999999986 234555788999999999999999
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCC
Q 005282 252 HFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSS 289 (704)
Q Consensus 252 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~ 289 (704)
+..|=..+..|+...... -+++|-++.-|.++
T Consensus 1052 sdlAk~FF~Els~k~n~i------ynlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1052 SDLAKSFFKELSSKGNTI------YNLLPDILSRLSNG 1083 (1251)
T ss_pred HHHHHHHHHHhhhcccch------hhhchHHHHhhccC
Confidence 998888888887543211 13556666555554
No 242
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=92.89 E-value=1.2 Score=48.01 Aligned_cols=243 Identities=12% Similarity=0.149 Sum_probs=152.9
Q ss_pred HHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHH
Q 005282 68 AKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPH 147 (704)
Q Consensus 68 ~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~ 147 (704)
+..-...|.+.. +...+.++..-.++.|+..+...+.. .++. ..+-.++...+.++ .+.+.+|.
T Consensus 271 K~~Ff~~L~~~l--~~~pe~i~~~kvlp~Ll~~~~~g~a~--------~~~l-tpl~k~~k~ld~~e-----yq~~i~p~ 334 (690)
T KOG1243|consen 271 KQKFFSGLIDRL--DNFPEEIIASKVLPILLAALEFGDAA--------SDFL-TPLFKLGKDLDEEE-----YQVRIIPV 334 (690)
T ss_pred HHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHhhccccc--------hhhh-hHHHHhhhhccccc-----cccchhhh
Confidence 344444444422 33334455556677777777766520 1222 22333333333333 56678899
Q ss_pred HHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchh
Q 005282 148 LVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDEN 227 (704)
Q Consensus 148 L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 227 (704)
|+++++..+. .+|...+.-+-+.. +.....++..-++|.+..-+.+.++.+++.++.++..|+. .-+
T Consensus 335 l~kLF~~~Dr--------~iR~~LL~~i~~~i---~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~--kL~ 401 (690)
T KOG1243|consen 335 LLKLFKSPDR--------QIRLLLLQYIEKYI---DHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAP--KLS 401 (690)
T ss_pred HHHHhcCcch--------HHHHHHHHhHHHHh---hhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHh--hhc
Confidence 9999999876 67766665555554 3344557788899999999999999999999999999874 111
Q ss_pred hHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCC-HHHHHHHhcCCChhHHHHHHHHHHHHhc
Q 005282 228 KKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGA-LQPVIGLLSSSCSESKREAALLLGQFAA 306 (704)
Q Consensus 228 ~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~-l~~L~~ll~~~~~~~~~~a~~~L~~l~~ 306 (704)
.. ......+..+-++-.+++..+|....-+|+.++..... ....++ ...+..-+.++-...|..+..++.....
T Consensus 402 ~~-~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~----~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~ 476 (690)
T KOG1243|consen 402 KR-NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAA----SVRKRVLASAFTRALKDPFVPARKAGVLALAATQE 476 (690)
T ss_pred hh-hhcHHHHHHHHhhCccccCcccccceeeecccccccch----hhhccccchhhhhhhcCCCCCchhhhhHHHhhccc
Confidence 11 22222344555554567788999999999999755322 123333 3344455666666678888887776543
Q ss_pred cCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 005282 307 ADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLA 347 (704)
Q Consensus 307 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 347 (704)
. .-..-+...+++.+..+..+++..++..|..++...-
T Consensus 477 ~---~~~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl 514 (690)
T KOG1243|consen 477 Y---FDQSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFL 514 (690)
T ss_pred c---cchhhhhhhccccccccccCcccchhhHHHHHHHHHH
Confidence 2 2222344568888888888888888888877776544
No 243
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=92.81 E-value=10 Score=38.57 Aligned_cols=164 Identities=15% Similarity=0.154 Sum_probs=115.2
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhc-CChhhHHHHHHc-C-CHHHHHHHhcCC-----C--------hhHHHHHHHH
Q 005282 237 LPTLVLMLRSEDASVHFEAVGVIGNLVH-SSPSIKKEVILA-G-ALQPVIGLLSSS-----C--------SESKREAALL 300 (704)
Q Consensus 237 i~~L~~lL~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~-~-~l~~L~~ll~~~-----~--------~~~~~~a~~~ 300 (704)
++.+.+.|++....+...+++.|..++. ........+... + ..+.+..++... . +++|...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6788889988888899999999999998 554555555542 3 234555555321 1 2777777775
Q ss_pred HHHHh-ccCCcchHHHHh-cCChHHHHHhhCCCCHHHHHHHHHHHHHhh-cCC----chhhhHHhhCChHHHHHhhcCCC
Q 005282 301 LGQFA-AADSNSKVHIVQ-RGAVRPLIEMLQSPDSQLKEMSAFALGRLA-QDT----HNQAGIAQDGGILPLLKLLDSKN 373 (704)
Q Consensus 301 L~~l~-~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~-~~~----~~~~~~~~~~~~~~L~~ll~~~~ 373 (704)
+..+. ..++..+..++. .+.+..+.+-+..+++++....+.+|..-. ... ..+..+.....+..|..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 54444 444455555554 467888999998888999999999998644 332 23445666777888888877766
Q ss_pred h----hHHHHHHHHHHHcccCCchhhHHHhh
Q 005282 374 G----SLQHNAAFALYGLADNEDNVADLVRV 400 (704)
Q Consensus 374 ~----~v~~~a~~~L~~l~~~~~~~~~l~~~ 400 (704)
+ .+...+-..|..++.++..--.+-..
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p~~Gv~f~d~ 248 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDPKHGVCFPDN 248 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCCCcccccCCC
Confidence 6 89999999999999877654444433
No 244
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=92.75 E-value=0.42 Score=44.09 Aligned_cols=117 Identities=13% Similarity=0.167 Sum_probs=78.5
Q ss_pred ChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc--CChhhHHHHHHcCCcHHHHHHHhhccCCCCC-cchhHHHH
Q 005282 93 AVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA--VKPEHQQIIVDTGALPHLVSLLKQYKNGGNS-RALSGVIR 169 (704)
Q Consensus 93 ~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~--~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~-~~~~~~~~ 169 (704)
....++..+.+... .. ..+.-|.... ....+.+.+++.||+..|+.+|......... ..+.+...
T Consensus 67 ~p~~~i~~L~~~~~----------~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~ 134 (187)
T PF06371_consen 67 SPEWYIKKLKSRPS----------TS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEH 134 (187)
T ss_dssp HHHHHHHHHTTT------------HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHH
T ss_pred hHHHHHHHHHccCc----------cH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHH
Confidence 34556777766653 11 2333333323 4556888999999999999999775432221 12347888
Q ss_pred HHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 005282 170 RAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLA 221 (704)
Q Consensus 170 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 221 (704)
.++.+|..+..........+...+++..|...+.+++..++..++..|..+|
T Consensus 135 ~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 135 ECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 8999999998644444555556788999999999999999999999998887
No 245
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=92.50 E-value=6.7 Score=40.43 Aligned_cols=170 Identities=13% Similarity=0.092 Sum_probs=98.1
Q ss_pred HHHHHHHHHHH-HhhhcChhhhhhhhccCCcHHHHHHhcC-CCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHh
Q 005282 166 GVIRRAADAIT-NLAHENANIKTRVRVEDGIPPLVELLKF-VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLM 243 (704)
Q Consensus 166 ~~~~~a~~~L~-~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 243 (704)
+-+..|+.-|. .+|.++........ ..++..+++.|.+ .+...+..|++.|..++...+. +-.=-..-.+..+++.
T Consensus 302 ~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~-~l~DstE~ai~K~Lea 379 (516)
T KOG2956|consen 302 SERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA-RLFDSTEIAICKVLEA 379 (516)
T ss_pred hHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH-hhhchHHHHHHHHHHH
Confidence 34445555333 34443322222111 2335567777776 7888999999999999963322 2111111134445555
Q ss_pred hcCCCHHHHHHHHHH-HHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHH--hcCC
Q 005282 244 LRSEDASVHFEAVGV-IGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIV--QRGA 320 (704)
Q Consensus 244 L~~~~~~v~~~a~~~-L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~~ 320 (704)
-.+.++++...|... +.-++...|..+ +..+..++...+......++..+-.++..- .+..+. -..+
T Consensus 380 a~ds~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l--~~EeL~~ll~di 449 (516)
T KOG2956|consen 380 AKDSQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTADEPRAVAVIKMLTKLFERL--SAEELLNLLPDI 449 (516)
T ss_pred HhCCchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcCcchHHHHHHHHHHHHHhhc--CHHHHHHhhhhh
Confidence 556666666665554 444555544432 334444554555555556665666665322 222222 2468
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 005282 321 VRPLIEMLQSPDSQLKEMSAFALGRLA 347 (704)
Q Consensus 321 i~~L~~ll~~~~~~v~~~a~~~L~~l~ 347 (704)
.|.++....+.+..+|+.|..+|..+.
T Consensus 450 aP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 450 APCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred hhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 899999999999999999999997765
No 246
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.43 E-value=2.9 Score=44.95 Aligned_cols=211 Identities=16% Similarity=0.141 Sum_probs=130.0
Q ss_pred hhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc-CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHH
Q 005282 164 LSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLK-FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVL 242 (704)
Q Consensus 164 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 242 (704)
++.++..|..+|..+.--+.+.. ..-+|.++..+. +++|.+|.+|.-.++.+........+. .-..|.+
T Consensus 909 d~~lq~aA~l~L~klMClS~~fc-----~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de-----~t~yLyr 978 (1128)
T COG5098 909 DEELQVAAYLSLYKLMCLSFEFC-----SEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADE-----HTHYLYR 978 (1128)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHH-----HHHHHHH
Confidence 35888888888888753232222 245788888888 899999999999998876432222222 2345777
Q ss_pred hhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChH
Q 005282 243 MLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVR 322 (704)
Q Consensus 243 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 322 (704)
-|.+.+..|++.++.++..+.-... +--.|-++.+..+|.+++.++...|-..+..++..+.. +-.|.++
T Consensus 979 rL~De~~~V~rtclmti~fLilagq-----~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdNt-----~yn~fid 1048 (1128)
T COG5098 979 RLGDEDADVRRTCLMTIHFLILAGQ-----LKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDNT-----MYNGFID 1048 (1128)
T ss_pred HhcchhhHHHHHHHHHHHHHHHccc-----eeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcccc-----hhhhhHH
Confidence 7889999999999999999875431 22357889999999999999988888888888764332 2245555
Q ss_pred HHHHhhCC---CCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHHHh
Q 005282 323 PLIEMLQS---PDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVR 399 (704)
Q Consensus 323 ~L~~ll~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~ 399 (704)
....+-++ ++.. -+.....|..+......+.++.+. ...++.+.....--...+.++.||-...++...+++
T Consensus 1049 ifs~ls~~ae~g~e~-fk~II~FLt~fI~kerh~kql~E~----L~~rl~rc~tq~qwd~~~~~l~nLp~k~~~~~~Ll~ 1123 (1128)
T COG5098 1049 IFSTLSSDAENGQEP-FKLIIGFLTDFISKERHQKQLKES----LFLRLLRCNTQSQWDKLLCSLFNLPDKIAGSGGLLN 1123 (1128)
T ss_pred HHHHcCchhhcCCCc-HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhhhHHHHHHHHHHhcCCccccchhhHhh
Confidence 44443321 2222 234456666666554444433321 123444443333333445556666444444444443
No 247
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=92.39 E-value=2 Score=39.36 Aligned_cols=149 Identities=13% Similarity=0.119 Sum_probs=96.0
Q ss_pred HHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc--CChhhHHHHHHcCCc
Q 005282 68 AKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA--VKPEHQQIIVDTGAL 145 (704)
Q Consensus 68 ~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~--~~~~~~~~~~~~g~l 145 (704)
...++..|.-++.+|+.+..+.++.+--.+..+|...+. +.+|+ .+|..+..+++.+. ++++....+....++
T Consensus 117 vcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~----~~~fE-yLRltsLGVIgaLvkNdsq~vi~fLltTeiv 191 (315)
T COG5209 117 VCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSS----NSKFE-YLRLTSLGVIGALVKNDSQYVIKFLLTTEIV 191 (315)
T ss_pred HHHHHHHHHHHhcCcchheeeeecccceeeHhhhhcccc----CCccc-eeeehHHHHHHHHHhCCCHHHHHHHHhhhHH
Confidence 466777777788899999999888876666666665543 22232 68899999999999 566677788888999
Q ss_pred HHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhh-------ccCCcHHHH-HHhcCCCHHHHHHHHHHH
Q 005282 146 PHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVR-------VEDGIPPLV-ELLKFVDVKVQRAAAGAL 217 (704)
Q Consensus 146 ~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-------~~~~i~~L~-~ll~~~~~~~~~~a~~~L 217 (704)
|..++.+...+. --+..+..++..+..++....-... ....+..++ ++...+...+.+.++++-
T Consensus 192 PLcLrIme~gSE--------lSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcY 263 (315)
T COG5209 192 PLCLRIMELGSE--------LSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCY 263 (315)
T ss_pred HHHHHHHHhhhH--------HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHh
Confidence 999999988764 4455666666666543332211100 011112222 222345556667777777
Q ss_pred HHhccCCchhhHH
Q 005282 218 RTLAFKNDENKKL 230 (704)
Q Consensus 218 ~~l~~~~~~~~~~ 230 (704)
..++. ++..|..
T Consensus 264 lRLsd-~p~aR~l 275 (315)
T COG5209 264 LRLSD-KPHARAL 275 (315)
T ss_pred eeecC-CHhHHHH
Confidence 67763 5554443
No 248
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=92.22 E-value=1.4 Score=36.04 Aligned_cols=95 Identities=15% Similarity=0.169 Sum_probs=66.3
Q ss_pred cEEEEE-cCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhcCcccc--------------
Q 005282 537 DVTFVV-EGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDV-------------- 601 (704)
Q Consensus 537 d~~~~~-~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~-------------- 601 (704)
.+.+.. +|+.|.+.+.+ +-+|-..+.|+...- +. .-.|+.+.+...+|..+++|+-...-..
T Consensus 3 ~i~l~s~dge~F~vd~~i-AerSiLikN~l~d~~-~~-n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p 79 (158)
T COG5201 3 MIELESIDGEIFRVDENI-AERSILIKNMLCDST-AC-NYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKP 79 (158)
T ss_pred ceEEEecCCcEEEehHHH-HHHHHHHHHHhcccc-cc-CCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCC
Confidence 344544 67888887754 558888888876421 11 1246778999999999999996543221
Q ss_pred -----------ChhhHHHHHHHHhhhChHhHHHHHHHHHHhhCC
Q 005282 602 -----------SVDIAQDLLRAADQYLLEGLKRLCEYSIAQIIS 634 (704)
Q Consensus 602 -----------~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~ 634 (704)
+-+.+.++.-+|+|+.++.|.+.|...+...+.
T Consensus 80 ~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemir 123 (158)
T COG5201 80 SDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIR 123 (158)
T ss_pred ccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHc
Confidence 223567888889999999999998877765444
No 249
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=92.19 E-value=9.3 Score=36.59 Aligned_cols=198 Identities=20% Similarity=0.103 Sum_probs=114.0
Q ss_pred hhhHHHHHHHHHHHHHhhcCh-hHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHH
Q 005282 62 ETDRAAAKTASHALVEFAKNE-EIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQII 139 (704)
Q Consensus 62 ~~~~~~~~~a~~~L~~l~~~~-~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~ 139 (704)
..++..+...+..|..++.+. .....+ +..|..+...+.. +.+.-+.+.+..+. .++...
T Consensus 12 ~~~~~~~~~~L~~L~~l~~~~~~~~~~v-----~~~L~~L~~~~~~----------~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 12 ISDPELQLPLLEALPSLACHKNVCVPPV-----LQTLVSLVEQGSL----------ELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred CCChHHHHHHHHHHHHHhccCccchhHH-----HHHHHHHHcCCch----------hHHHHHHHHHHHHHHhCchHH---
Confidence 345556788888888888865 444444 6777777777765 56667788888888 443332
Q ss_pred HHcCCcHHHHHHHhh--ccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHh-cCCCHHHHHHHHHH
Q 005282 140 VDTGALPHLVSLLKQ--YKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELL-KFVDVKVQRAAAGA 216 (704)
Q Consensus 140 ~~~g~l~~L~~lL~~--~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~~~~~a~~~ 216 (704)
+.+..++..+.. .....+....++........+..+|...|+ .-...++.+..++ ++.++..+..++.+
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-----~g~~ll~~ls~~L~~~~~~~~~alale~ 145 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-----HGVDLLPLLSGCLNQSCDEVAQALALEA 145 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 223333333111 111111122346666667788899977776 2234578888999 78889999999999
Q ss_pred HHHhccCCchhhHHhHh-cCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCh-hhHHHHHHcCCHHHHHHHhcCCCh
Q 005282 217 LRTLAFKNDENKKLIVE-CNALPTLVLMLR-SEDASVHFEAVGVIGNLVHSSP-SIKKEVILAGALQPVIGLLSSSCS 291 (704)
Q Consensus 217 L~~l~~~~~~~~~~~~~-~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~ 291 (704)
|..++.. .+++ ......+.+-+. ...+.+....+..+..+....- ..........++..+.++..+.+.
T Consensus 146 l~~Lc~~------~vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~ 217 (234)
T PF12530_consen 146 LAPLCEA------EVVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDV 217 (234)
T ss_pred HHHHHHH------hhccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccccc
Confidence 9999931 1111 112333444443 3456666655555554443211 111222344556666666665554
No 250
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=92.17 E-value=7.8 Score=39.96 Aligned_cols=172 Identities=18% Similarity=0.138 Sum_probs=101.8
Q ss_pred hhHHHHHHHHHHHHHhhc-Ch-hHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHH
Q 005282 63 TDRAAAKTASHALVEFAK-NE-EIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQII 139 (704)
Q Consensus 63 ~~~~~~~~a~~~L~~l~~-~~-~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~ 139 (704)
+....+..|+.-|..+.+ +. .+.... -..++..+++.|.+.. ++..+..|.++|..++ ..+.- +
T Consensus 299 e~a~~~k~alsel~~m~~e~sfsvWeq~-f~~iL~~l~EvL~d~~---------~~~~k~laLrvL~~ml~~Q~~~---l 365 (516)
T KOG2956|consen 299 ERASERKEALSELPKMLCEGSFSVWEQH-FAEILLLLLEVLSDSE---------DEIIKKLALRVLREMLTNQPAR---L 365 (516)
T ss_pred cchhHHHHHHHHHHHHHHccchhHHHHH-HHHHHHHHHHHHccch---------hhHHHHHHHHHHHHHHHhchHh---h
Confidence 444456777776776665 31 111111 1234678889998843 2478999999999999 33321 1
Q ss_pred HHc--CCcHHHHHHHhhccCCCCCcchhHHHHHHHHH-HHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHH
Q 005282 140 VDT--GALPHLVSLLKQYKNGGNSRALSGVIRRAADA-ITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGA 216 (704)
Q Consensus 140 ~~~--g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~-L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~ 216 (704)
.+. -++..+++.-++..+ ++...|... +.-++...|.. . |..+..++...|......++..
T Consensus 366 ~DstE~ai~K~Leaa~ds~~--------~v~~~Aeed~~~~las~~P~~-~-------I~~i~~~Ilt~D~~~~~~~iKm 429 (516)
T KOG2956|consen 366 FDSTEIAICKVLEAAKDSQD--------EVMRVAEEDCLTTLASHLPLQ-C-------IVNISPLILTADEPRAVAVIKM 429 (516)
T ss_pred hchHHHHHHHHHHHHhCCch--------hHHHHHHHHHHHHHHhhCchh-H-------HHHHhhHHhcCcchHHHHHHHH
Confidence 111 123344444444443 555555554 44444444432 2 3345555555666666667777
Q ss_pred HHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 005282 217 LRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLV 263 (704)
Q Consensus 217 L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 263 (704)
+-.++.+-+..--...-..+.|.+++.-.+....||+.|+.+|..+.
T Consensus 430 ~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 430 LTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred HHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 77777422221112233567899999999999999999999998775
No 251
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=91.55 E-value=1.9 Score=48.43 Aligned_cols=176 Identities=17% Similarity=0.159 Sum_probs=106.1
Q ss_pred HHHHHhccCCcchHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCchhhhHHhhCChH--HHHHhhcC-CChh
Q 005282 300 LLGQFAAADSNSKVHIVQRGAVRPLIEMLQS-PDSQLKEMSAFALGRLAQDTHNQAGIAQDGGIL--PLLKLLDS-KNGS 375 (704)
Q Consensus 300 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~--~L~~ll~~-~~~~ 375 (704)
+|++.....++....+++.|++..+...++. ...+.+..+...+.|++...+.+........+. .+..++.. .+.+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 7888888888999999999999999999985 566788899999999997665443322222222 33334444 4448
Q ss_pred HHHHHHHHHHHcccCCch-hhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHH-HHHHHh-hccHHHHH
Q 005282 376 LQHNAAFALYGLADNEDN-VADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNH-LLYLLR-VADRAVKR 452 (704)
Q Consensus 376 v~~~a~~~L~~l~~~~~~-~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-L~~ll~-~~~~~v~~ 452 (704)
.-..|+..|..+..+.+. ...-...-+-+.+. +++.................+ +..++. +..+..+.
T Consensus 574 rsY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~----------e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~l 643 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTECVFRNSVNELLV----------EAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQL 643 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCccccchHHHHHHHH----------HHhhccCccceeehhhhhcchhHHHHhcccCCCchHH
Confidence 888999999999865332 10000000000000 000000000000001111222 444443 45577889
Q ss_pred HHHHHHHhccC-CCccceeeecCCcHHHHHHHHh
Q 005282 453 RVTLALAHLCA-PDDCKTIFIDNNGLELLLGLLE 485 (704)
Q Consensus 453 ~a~~~L~~l~~-~~~~~~~l~~~~~i~~L~~ll~ 485 (704)
.|.|++.++.. .++......+.|+++.+...-.
T Consensus 644 Wal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (699)
T KOG3665|consen 644 WALWTIKNVLEQNKEYCKLVRESNGFELIENIRV 677 (699)
T ss_pred HHHHHHHHHHHcChhhhhhhHhccchhhhhhcch
Confidence 99999999955 5556676778899988877654
No 252
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=91.54 E-value=21 Score=37.99 Aligned_cols=110 Identities=19% Similarity=0.183 Sum_probs=74.9
Q ss_pred hcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCC
Q 005282 79 AKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNG 158 (704)
Q Consensus 79 ~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~ 158 (704)
..+|+..+.+ +|.+..++..+.+.+. .||..++++|+-+.+.-.--+...-.|.+..|..-+-+...
T Consensus 80 ~~dpeg~~~V--~~~~~h~lRg~eskdk----------~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~- 146 (885)
T COG5218 80 PDDPEGEELV--AGTFYHLLRGTESKDK----------KVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREK- 146 (885)
T ss_pred CCChhhhHHH--HHHHHHHHhcccCcch----------hHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchH-
Confidence 3456653333 5678888888888865 89999999999999443333444445666667666665554
Q ss_pred CCCcchhHHHHHHHHHHHHhhh--cChhhhhhhhccCCcHHHHHHhc-CCCHHHHHHHHH
Q 005282 159 GNSRALSGVIRRAADAITNLAH--ENANIKTRVRVEDGIPPLVELLK-FVDVKVQRAAAG 215 (704)
Q Consensus 159 ~~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~ 215 (704)
.++..|+.+|..+-. ++++++ ....|+.+++ +++.++|..|+.
T Consensus 147 -------~VR~eAv~~L~~~Qe~~~neen~-------~~n~l~~~vqnDPS~EVRr~all 192 (885)
T COG5218 147 -------AVRREAVKVLCYYQEMELNEENR-------IVNLLKDIVQNDPSDEVRRLALL 192 (885)
T ss_pred -------HHHHHHHHHHHHHHhccCChHHH-------HHHHHHHHHhcCcHHHHHHHHHH
Confidence 899999999999863 233332 2345666666 567788876654
No 253
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=91.36 E-value=14 Score=35.41 Aligned_cols=126 Identities=23% Similarity=0.143 Sum_probs=78.7
Q ss_pred chHHHHHHHHHHHhhcCCh-hhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccC
Q 005282 115 EHEVEKECAFALGLLAVKP-EHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVED 193 (704)
Q Consensus 115 d~~v~~~a~~~L~~l~~~~-~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 193 (704)
+++.+...+.+|..++.+. .+...+ ++.|..+...... +....+...+..+...++..- +
T Consensus 14 ~~~~~~~~L~~L~~l~~~~~~~~~~v-----~~~L~~L~~~~~~--------~~~~~~~rLl~~lw~~~~r~f------~ 74 (234)
T PF12530_consen 14 DPELQLPLLEALPSLACHKNVCVPPV-----LQTLVSLVEQGSL--------ELRYVALRLLTLLWKANDRHF------P 74 (234)
T ss_pred ChHHHHHHHHHHHHHhccCccchhHH-----HHHHHHHHcCCch--------hHHHHHHHHHHHHHHhCchHH------H
Confidence 3589999999999999544 333222 2445555554433 444456666666665444321 3
Q ss_pred CcHHHHHHh--------c--CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhh-cCCCHHHHHHHHHHHHHH
Q 005282 194 GIPPLVELL--------K--FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLML-RSEDASVHFEAVGVIGNL 262 (704)
Q Consensus 194 ~i~~L~~ll--------~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l 262 (704)
.+..++..+ . +...+.......++..+|...|+ .....++.+..++ ++.++.++..++.+|..+
T Consensus 75 ~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-----~g~~ll~~ls~~L~~~~~~~~~alale~l~~L 149 (234)
T PF12530_consen 75 FLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-----HGVDLLPLLSGCLNQSCDEVAQALALEALAPL 149 (234)
T ss_pred HHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 344344331 1 22345566666788888875555 2223577788888 788889999999999999
Q ss_pred hc
Q 005282 263 VH 264 (704)
Q Consensus 263 ~~ 264 (704)
+.
T Consensus 150 c~ 151 (234)
T PF12530_consen 150 CE 151 (234)
T ss_pred HH
Confidence 83
No 254
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=91.29 E-value=7.7 Score=40.79 Aligned_cols=153 Identities=12% Similarity=0.180 Sum_probs=111.0
Q ss_pred cHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCH----HHHHHHHHHHHHHhcCChhhH
Q 005282 195 IPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDA----SVHFEAVGVIGNLVHSSPSIK 270 (704)
Q Consensus 195 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~----~v~~~a~~~L~~l~~~~~~~~ 270 (704)
...++..+.+++...+..++.-+..++. ++.....++...++..|..++.+++. .+....+.++..+-...- ..
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~-d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-vs 162 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSL-DPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-VS 162 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccc-cHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-ee
Confidence 3568888888888888889999999996 78888889999999999999987654 666677777777654321 00
Q ss_pred HHHHHcCCHHHHHHHhc--CCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 005282 271 KEVILAGALQPVIGLLS--SSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQ 348 (704)
Q Consensus 271 ~~~~~~~~l~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 348 (704)
=..+...++.....+.. ..+..+...|+..|-++..++......+.+.--++.|+..++..+..++..|...+..+..
T Consensus 163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR 242 (713)
T ss_pred eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 00111223334444432 2344567778888888887777777778888889999999999998888888777777764
Q ss_pred C
Q 005282 349 D 349 (704)
Q Consensus 349 ~ 349 (704)
.
T Consensus 243 ~ 243 (713)
T KOG2999|consen 243 K 243 (713)
T ss_pred h
Confidence 3
No 255
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=90.86 E-value=20 Score=36.94 Aligned_cols=240 Identities=17% Similarity=0.136 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCc
Q 005282 117 EVEKECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGI 195 (704)
Q Consensus 117 ~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i 195 (704)
.++..++..+...+ ...+.-..+. ...+..+.++|.+...... .+.+...++..|..++. .+..+..+...+.+
T Consensus 111 kvK~~i~~~~~ly~~kY~e~f~~~l-~~fv~~vw~lL~~~~~~~~---~D~lv~~al~FL~~v~~-~~~~~~lf~~~~~L 185 (370)
T PF08506_consen 111 KVKAWICENLNLYAEKYEEEFEPFL-PTFVQAVWNLLTKISQQPK---YDILVSKALQFLSSVAE-SPHHKNLFENKPHL 185 (370)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHH-HHHHHHHHHHHTC--SSGG---GHHHHHHHHHHHHHHHT-SHHHHTTT-SHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhccc---ccHHHHHHHHHHHHHHc-chhHHHHhCCHHHH
Confidence 55666666666655 3333222222 2345666677765433221 23666677777776654 33222211111112
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 005282 196 PPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR-SEDASVHFEAVGVIGNLVHSSPSIKKEVI 274 (704)
Q Consensus 196 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 274 (704)
+.+++- -++-+++. +++. ..+.+.+-.+-+-+-+. ++...-|..|+..|..++...+.....++
T Consensus 186 ~~Iie~-------------VI~Pnl~~-~e~D-~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~ 250 (370)
T PF08506_consen 186 QQIIEK-------------VIFPNLCL-REED-EELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL 250 (370)
T ss_dssp HHHHHH-------------THHHHHS---HHH-HHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-------------hccCccCC-CHHH-HHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH
Confidence 222111 13445654 3333 33333334444444444 33345677888888888854222211111
Q ss_pred HcCCHHHHHHHhc------CCChhHHHHHHHHHHHHhccCCc------------chHHHHhcCChHHHHHhhCCCCHHHH
Q 005282 275 LAGALQPVIGLLS------SSCSESKREAALLLGQFAAADSN------------SKVHIVQRGAVRPLIEMLQSPDSQLK 336 (704)
Q Consensus 275 ~~~~l~~L~~ll~------~~~~~~~~~a~~~L~~l~~~~~~------------~~~~~~~~~~i~~L~~ll~~~~~~v~ 336 (704)
...+..++. +.++..+..|+..++.++..... +...+....++|-|. --.+..+-++
T Consensus 251 ----~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLk 325 (370)
T PF08506_consen 251 ----MQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILK 325 (370)
T ss_dssp ----HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHH
T ss_pred ----HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchH
Confidence 122223332 34566677888888888754422 223344455566665 2224556788
Q ss_pred HHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHH
Q 005282 337 EMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFAL 384 (704)
Q Consensus 337 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L 384 (704)
..|++.+..+-..-+. . .-.+.++.++++|.+++.-|+..|+.++
T Consensus 326 a~aik~~~~Fr~~l~~-~--~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 326 ADAIKFLYTFRNQLPK-E--QLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHHHGGGS-H-H--HHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCH-H--HHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 8888888887764322 1 2234778899999999999999998775
No 256
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=90.47 E-value=5.7 Score=44.65 Aligned_cols=179 Identities=16% Similarity=0.169 Sum_probs=111.2
Q ss_pred HHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCc--HHHHH
Q 005282 74 ALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGAL--PHLVS 150 (704)
Q Consensus 74 ~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l--~~L~~ 150 (704)
+|.+... +++.++.+++.|++..+...++.-+. .+++..++..+++++...+.+........+ ..+..
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~---------~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~ 564 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDN---------EELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKV 564 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccc---------hhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Confidence 6667766 69999999999999999999997743 589999999999999444433322222222 24444
Q ss_pred HHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHH
Q 005282 151 LLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKL 230 (704)
Q Consensus 151 lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 230 (704)
++...+. .+.-..++..|+.+..+.+... ....+..+...+......-+.....
T Consensus 565 ~~~~w~~-------~ersY~~~siLa~ll~~~~~~~-------------------~~~~r~~~~~~l~e~i~~~~~~~~~ 618 (699)
T KOG3665|consen 565 LLNKWDS-------IERSYNAASILALLLSDSEKTT-------------------ECVFRNSVNELLVEAISRWLTSEIR 618 (699)
T ss_pred HHhhcch-------hhHHHHHHHHHHHHHhCCCcCc-------------------cccchHHHHHHHHHHhhccCcccee
Confidence 4444433 2566677888888876444310 1112222222232222212222222
Q ss_pred hHhcCChHH-HHHhhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhc
Q 005282 231 IVECNALPT-LVLMLR-SEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLS 287 (704)
Q Consensus 231 ~~~~~~i~~-L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~ 287 (704)
+.....+.. +..++. +..+..+.+|+|++.++.+.+++..+.+...++++.+...-.
T Consensus 619 ~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (699)
T KOG3665|consen 619 VINDRSFFPRILRILRLSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRV 677 (699)
T ss_pred ehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcch
Confidence 222222223 555555 557889999999999999998888887888888888776554
No 257
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=90.47 E-value=20 Score=37.19 Aligned_cols=187 Identities=12% Similarity=0.101 Sum_probs=115.4
Q ss_pred HHHHHHHHHHhhcC----hhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHH--HHHH
Q 005282 68 AKTASHALVEFAKN----EEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQ--IIVD 141 (704)
Q Consensus 68 ~~~a~~~L~~l~~~----~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~--~~~~ 141 (704)
+..|+........+ ..+++.+.++=+.+.+-++|...+.+..++ |.-.+.-++.+|.-.|..|+... .++
T Consensus 28 ~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcp---d~Vy~~i~itvLacFC~~pElAsh~~~v- 103 (698)
T KOG2611|consen 28 RFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCP---DDVYLQISITVLACFCRVPELASHEEMV- 103 (698)
T ss_pred HHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCc---HHHHHHHHHHHHHHHhCChhhccCHHHH-
Confidence 55666666666652 566677888888899999998877644444 33456677888888888887543 444
Q ss_pred cCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCC-HHHHHHHHHHHHHh
Q 005282 142 TGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD-VKVQRAAAGALRTL 220 (704)
Q Consensus 142 ~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~~~~~a~~~L~~l 220 (704)
+.||.|+.++....++... +.-.+.+.+..+|..++.. +.....++..|+++.+.++-.-++ ..-+.-++..+.-+
T Consensus 104 -~~IP~llev~~~~~d~d~e-~~~~m~~d~Y~cL~~Va~~-e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~Vlll~ 180 (698)
T KOG2611|consen 104 -SRIPLLLEVMSKGIDTDYE-DNLIMLEDCYECLYLVATA-EAGLMTLIASGGLRVIAQMYELPDGSHDMALALKVLLLL 180 (698)
T ss_pred -HhhhHHHHHHHhcCCCchh-hhHHHHHHHHHHHHHHhcC-CchhHHHHhcCchHHHHHHHhCCCCchhHHHHHHHHHHH
Confidence 5799999999887653221 1125788899999999874 666777889999999997765322 11122222222222
Q ss_pred cc---CCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 005282 221 AF---KNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLV 263 (704)
Q Consensus 221 ~~---~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 263 (704)
.. .-++....+... +..+..-+...+...+...|..|..+.
T Consensus 181 ~~~~~cw~e~~~~flal--i~~va~df~~~~~a~KfElc~lL~~vl 224 (698)
T KOG2611|consen 181 VSKLDCWSETIERFLAL--IAAVARDFAVLHNALKFELCHLLSAVL 224 (698)
T ss_pred HHhcccCcCCHHHHHHH--HHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 21 122222222211 233333333445566777888887554
No 258
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=90.08 E-value=8.2 Score=41.74 Aligned_cols=183 Identities=16% Similarity=0.146 Sum_probs=116.3
Q ss_pred HHHHHHhcC----CCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhhH
Q 005282 196 PPLVELLKF----VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR-SEDASVHFEAVGVIGNLVHSSPSIK 270 (704)
Q Consensus 196 ~~L~~ll~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~ 270 (704)
|.......+ +|+.++.+|.-+|..+-.-+.+... .-+|.++..+. +++|.+|..|+-.++.++-......
T Consensus 895 pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~ 969 (1128)
T COG5098 895 PVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTA 969 (1128)
T ss_pred HHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehhhhh
Confidence 444455543 6889999988888877431222111 23688888887 8999999999999888764422211
Q ss_pred HHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q 005282 271 KEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDT 350 (704)
Q Consensus 271 ~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 350 (704)
. ..-..|..-|.+.+..+++.|..++.++.-.+. +--.|-++.+...|.+++..+...|-..+..++...
T Consensus 970 d-----e~t~yLyrrL~De~~~V~rtclmti~fLilagq-----~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~Kd 1039 (1128)
T COG5098 970 D-----EHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQ-----LKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKD 1039 (1128)
T ss_pred H-----HHHHHHHHHhcchhhHHHHHHHHHHHHHHHccc-----eeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcc
Confidence 1 223566677778889999999999998864321 222577888999999999999999888888888654
Q ss_pred chhhhHHhhCChHHHHHhhcC----CChhHHHHHHHHHHHcccCCchhhHHHh
Q 005282 351 HNQAGIAQDGGILPLLKLLDS----KNGSLQHNAAFALYGLADNEDNVADLVR 399 (704)
Q Consensus 351 ~~~~~~~~~~~~~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~l~~ 399 (704)
.. +-+|.++. ...+.+ ++.+ -+...+.|..+...+.+.+++.+
T Consensus 1040 Nt----~yn~fidi-fs~ls~~ae~g~e~-fk~II~FLt~fI~kerh~kql~E 1086 (1128)
T COG5098 1040 NT----MYNGFIDI-FSTLSSDAENGQEP-FKLIIGFLTDFISKERHQKQLKE 1086 (1128)
T ss_pred cc----hhhhhHHH-HHHcCchhhcCCCc-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 22344433 333332 2222 23444555555544444444433
No 259
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=89.39 E-value=26 Score=39.45 Aligned_cols=202 Identities=18% Similarity=0.196 Sum_probs=110.3
Q ss_pred ChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHH
Q 005282 93 AVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRA 171 (704)
Q Consensus 93 ~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a 171 (704)
++..+.+++..... .-..|...|..+. ....... ..+..+..+++...... ...+...|
T Consensus 396 av~~i~~~I~~~~~-----------~~~ea~~~l~~l~~~~~~Pt~-----e~l~~l~~L~~~~~~~~----~~~l~~ta 455 (618)
T PF01347_consen 396 AVKFIKDLIKSKKL-----------TDDEAAQLLASLPFHVRRPTE-----ELLKELFELAKSPKVKN----SPYLRETA 455 (618)
T ss_dssp HHHHHHHHHHTT-S------------HHHHHHHHHHHHHT-----H-----HHHHHHHHHHT-HHHHT-----HHHHHHH
T ss_pred HHHHHHHHHHcCCC-----------CHHHHHHHHHHHHhhcCCCCH-----HHHHHHHHHHhCccccC----ChhHHHHH
Confidence 45667777777543 2334555666655 2112111 23455666665432111 12677777
Q ss_pred HHHHHHhhhcChh---------hhhhhhccCCcHHHHHHhc----CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChH
Q 005282 172 ADAITNLAHENAN---------IKTRVRVEDGIPPLVELLK----FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALP 238 (704)
Q Consensus 172 ~~~L~~l~~~~~~---------~~~~~~~~~~i~~L~~ll~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 238 (704)
+.+++.+....-. ..........++.+...+. ..+.+-+..++.+|+|+.. ...++
T Consensus 456 ~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-----------~~~i~ 524 (618)
T PF01347_consen 456 LLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-----------PESIP 524 (618)
T ss_dssp HHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT------------GGGHH
T ss_pred HHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-----------chhhH
Confidence 7777777632111 1122344456677776666 4567888899999999974 23567
Q ss_pred HHHHhhcCC---CHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcC--CChhHHHHHHHHHHHHhccCCcchH
Q 005282 239 TLVLMLRSE---DASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSS--SCSESKREAALLLGQFAAADSNSKV 313 (704)
Q Consensus 239 ~L~~lL~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~ 313 (704)
.+..++... +..+|..|+++|..++...+.. +.+.++.++.+ .+.++|..|..+|... +|..
T Consensus 525 ~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~e~~EvRiaA~~~lm~~---~P~~-- 591 (618)
T PF01347_consen 525 VLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK--------VREILLPIFMNTTEDPEVRIAAYLILMRC---NPSP-- 591 (618)
T ss_dssp HHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-TTS-HHHHHHHHHHHHHT------H--
T ss_pred HHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCCCCChhHHHHHHHHHHhc---CCCH--
Confidence 777777755 6789999999999887655432 24566667654 3566777776666542 2332
Q ss_pred HHHhcCChHHHHHhhCC-CCHHHHHHHHHHH
Q 005282 314 HIVQRGAVRPLIEMLQS-PDSQLKEMSAFAL 343 (704)
Q Consensus 314 ~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L 343 (704)
..+..+...+.. ++..|...+...|
T Consensus 592 -----~~l~~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 592 -----SVLQRIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp -----HHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred -----HHHHHHHHHHhhCchHHHHHHHHHhc
Confidence 235666676754 4566665554443
No 260
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=89.38 E-value=11 Score=42.72 Aligned_cols=185 Identities=12% Similarity=0.089 Sum_probs=122.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhh-cCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 005282 196 PPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLML-RSEDASVHFEAVGVIGNLVHSSPSIKKEVI 274 (704)
Q Consensus 196 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 274 (704)
+.+..-+.+.++.-+..|+..+..... ++.........|.+..+++.. .+.+..+...++.+|..|+........ =.
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~-e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~-~~ 333 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILE-EAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFR-KY 333 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHh-ccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhH-HH
Confidence 344445557889999999999998885 332111111223334444433 366888889999999999865433322 12
Q ss_pred HcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCch--
Q 005282 275 LAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHN-- 352 (704)
Q Consensus 275 ~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-- 352 (704)
..++.+.++.-+......++..+..++..++.... .....+.+..++++.++.++..+...+.........
T Consensus 334 ~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~ 406 (815)
T KOG1820|consen 334 AKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKT 406 (815)
T ss_pred HHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcC
Confidence 34677888888887777777777666666553111 124578888999999999999987777777654432
Q ss_pred hhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHccc
Q 005282 353 QAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD 389 (704)
Q Consensus 353 ~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 389 (704)
...-.-.+.++.++....+.+.+||..|..++..+..
T Consensus 407 ~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 407 VEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred cchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 1222223456667777888999999999998888753
No 261
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=89.35 E-value=3.8 Score=37.59 Aligned_cols=147 Identities=12% Similarity=0.128 Sum_probs=100.7
Q ss_pred HHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhh-cChhhhhhhhccCCcHHHH
Q 005282 121 ECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAH-ENANIKTRVRVEDGIPPLV 199 (704)
Q Consensus 121 ~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~~L~ 199 (704)
.|...|.-+++.|+.+..+.++..--.+..+|...+.+... .-++..++..++.+.. +++.....+....++|.++
T Consensus 119 naL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~f---EyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL 195 (315)
T COG5209 119 NALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKF---EYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL 195 (315)
T ss_pred HHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCcc---ceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence 45555555669999999999888766777777665543332 2678889999999884 4555666778889999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhc--------CChHHH-HHhhcCCCHHHHHHHHHHHHHHhcCChhhH
Q 005282 200 ELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVEC--------NALPTL-VLMLRSEDASVHFEAVGVIGNLVHSSPSIK 270 (704)
Q Consensus 200 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--------~~i~~L-~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 270 (704)
+++..++.-.+..|+.++..+.. ++..-+.+.+. .++..+ .++...+.....+.++++-..++.. +..+
T Consensus 196 rIme~gSElSktvaifI~qkil~-dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~-p~aR 273 (315)
T COG5209 196 RIMELGSELSKTVAIFIFQKILG-DDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDK-PHAR 273 (315)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCC-HhHH
Confidence 99999998888888888888874 44443333221 112222 2233356677788888888888744 5555
Q ss_pred HH
Q 005282 271 KE 272 (704)
Q Consensus 271 ~~ 272 (704)
..
T Consensus 274 ~l 275 (315)
T COG5209 274 AL 275 (315)
T ss_pred HH
Confidence 43
No 262
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=89.28 E-value=22 Score=37.94 Aligned_cols=116 Identities=11% Similarity=0.141 Sum_probs=82.1
Q ss_pred cCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhh
Q 005282 276 AGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAG 355 (704)
Q Consensus 276 ~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 355 (704)
.|.+.+++.-+.+++..++..++..|..+.. .-.-....+-++++..|.+-+-+..+.||..|..+|+.+-....+...
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d-~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen 168 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSD-VVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN 168 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH
Confidence 3567777777788899999999999888764 323344556678888888888888999999999999988755444332
Q ss_pred HHhhCChHHHHHhh-cCCChhHHHHHHHHHHHcccCCchhhHHHh
Q 005282 356 IAQDGGILPLLKLL-DSKNGSLQHNAAFALYGLADNEDNVADLVR 399 (704)
Q Consensus 356 ~~~~~~~~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~ 399 (704)
.+. ..++.++ .+++.+||+.| |.|+.-++.....+++
T Consensus 169 ~~~----n~l~~~vqnDPS~EVRr~a---llni~vdnsT~p~IlE 206 (885)
T COG5218 169 RIV----NLLKDIVQNDPSDEVRRLA---LLNISVDNSTYPCILE 206 (885)
T ss_pred HHH----HHHHHHHhcCcHHHHHHHH---HHHeeeCCCcchhHHH
Confidence 221 2344555 45677888764 6677767777766665
No 263
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=89.19 E-value=11 Score=42.71 Aligned_cols=173 Identities=16% Similarity=0.157 Sum_probs=116.5
Q ss_pred hhHHHHHHHHHHHHhhhcChhhhhhhhccCCcH---HHHHHhc-CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHH
Q 005282 164 LSGVIRRAADAITNLAHENANIKTRVRVEDGIP---PLVELLK-FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPT 239 (704)
Q Consensus 164 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~---~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 239 (704)
+|.-+..++..+...+.... .....+... .++.... +.+..+...++.+|..++...... ..-...++.+.
T Consensus 266 ~WK~R~Eale~l~~~l~e~~----~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~-~~~~~~~v~p~ 340 (815)
T KOG1820|consen 266 KWKDRKEALEELVAILEEAK----KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL-FRKYAKNVFPS 340 (815)
T ss_pred chHHHHHHHHHHHHHHhccc----cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh-hHHHHHhhcch
Confidence 56667777777777775332 122233333 3333333 567788888999999998644433 22234457888
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCC-cchHHHHhc
Q 005282 240 LVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADS-NSKVHIVQR 318 (704)
Q Consensus 240 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~ 318 (704)
+++-+....+.++..+..++-.++...+ .....+.+...+.+.++..+..+...+.......+ .....-.-.
T Consensus 341 lld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~ 413 (815)
T KOG1820|consen 341 LLDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVK 413 (815)
T ss_pred HHHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHH
Confidence 9999988888888887777766654221 22356788889999999999998888777665444 222222224
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 005282 319 GAVRPLIEMLQSPDSQLKEMSAFALGRLAQ 348 (704)
Q Consensus 319 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 348 (704)
++++.++....+.+.+||.+|..+++-+..
T Consensus 414 ~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 414 TLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred HHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 677888888888999999999999987764
No 264
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=88.98 E-value=1 Score=34.44 Aligned_cols=49 Identities=33% Similarity=0.407 Sum_probs=33.2
Q ss_pred cChhhHHHHHHHHhhhChHhHHHHHHHHHHhhCC---hhhHHHHHHHHHHcC
Q 005282 601 VSVDIAQDLLRAADQYLLEGLKRLCEYSIAQIIS---VENIMLMYELSEAYN 649 (704)
Q Consensus 601 ~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~---~~~~~~~~~~a~~~~ 649 (704)
++.+.+.+++.+|+|++++.|.+.|...+...+. ++....++.+...+.
T Consensus 11 ~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~t 62 (78)
T PF01466_consen 11 VDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDLT 62 (78)
T ss_dssp S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TSS
T ss_pred cCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCC
Confidence 4667899999999999999999999988866554 444445554444443
No 265
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=88.28 E-value=8.4 Score=40.64 Aligned_cols=98 Identities=20% Similarity=0.266 Sum_probs=66.3
Q ss_pred cCCHHHHHHH-hcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCchh
Q 005282 276 AGALQPVIGL-LSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQ-SPDSQLKEMSAFALGRLAQDTHNQ 353 (704)
Q Consensus 276 ~~~l~~L~~l-l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~ 353 (704)
.|++..++.. .++.+.++++.|+.+|+-+|..+++ .+...+.+|. +.++.+|...+-+|+-.|.+...+
T Consensus 550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~---------~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~ 620 (926)
T COG5116 550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD---------LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK 620 (926)
T ss_pred chhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH
Confidence 3456666666 5677888888888888888764433 3445555554 567888888888888877765443
Q ss_pred hhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcc
Q 005282 354 AGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLA 388 (704)
Q Consensus 354 ~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~ 388 (704)
. ++..|-.++.+.+.-||..|+-++.-+.
T Consensus 621 ~------a~diL~~L~~D~~dfVRQ~AmIa~~mIl 649 (926)
T COG5116 621 V------ATDILEALMYDTNDFVRQSAMIAVGMIL 649 (926)
T ss_pred H------HHHHHHHHhhCcHHHHHHHHHHHHHHHH
Confidence 3 2344555667777778888877776664
No 266
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=88.27 E-value=1.8 Score=34.20 Aligned_cols=72 Identities=19% Similarity=0.161 Sum_probs=56.0
Q ss_pred cHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh
Q 005282 195 IPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPS 268 (704)
Q Consensus 195 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 268 (704)
+...+..+.++.+.+|.+++..|+.+..... .......+++..+...|+++++-|-..|+.+|..++...+.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 3446677788889999999999999987443 22222345678888899999999999999999999966543
No 267
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.21 E-value=40 Score=37.71 Aligned_cols=171 Identities=16% Similarity=0.153 Sum_probs=83.3
Q ss_pred cHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhH-hcCChHH----HHHhh---cCC----CHHHHHHHHHHHHHH
Q 005282 195 IPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIV-ECNALPT----LVLML---RSE----DASVHFEAVGVIGNL 262 (704)
Q Consensus 195 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~----L~~lL---~~~----~~~v~~~a~~~L~~l 262 (704)
+|.++..|+.++.-+-..|+.++-.+-.-.......+. ...+.|. +..+. ..+ ++-+.+...+.+.-+
T Consensus 500 ~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~ 579 (960)
T KOG1992|consen 500 LPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISIL 579 (960)
T ss_pred HHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhC
Confidence 46677777888888888888888877542222222222 2223222 22222 222 333334444433322
Q ss_pred hcCChhhHHHHHHcCCHHHHH----HHhcCCChhH----HHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHH
Q 005282 263 VHSSPSIKKEVILAGALQPVI----GLLSSSCSES----KREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQ 334 (704)
Q Consensus 263 ~~~~~~~~~~~~~~~~l~~L~----~ll~~~~~~~----~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~ 334 (704)
+....... ...+..|. ...++++... .-++..++-+.++..........+...+|.+-..+..+-.+
T Consensus 580 ----~~~i~p~~-~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~E 654 (960)
T KOG1992|consen 580 ----QSAIIPHA-PELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQE 654 (960)
T ss_pred ----HHhhhhhh-hHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22110000 11222333 3333443322 22333333333333333333445566778888888777677
Q ss_pred HHHHHHHHHHHhhcCCch--------------hhhHH-hhCChHHHHHhhc
Q 005282 335 LKEMSAFALGRLAQDTHN--------------QAGIA-QDGGILPLLKLLD 370 (704)
Q Consensus 335 v~~~a~~~L~~l~~~~~~--------------~~~~~-~~~~~~~L~~ll~ 370 (704)
..-.+...++.+.....+ ...++ ..|-++.+++++.
T Consensus 655 fiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~lW~r~gNipalvrLl~ 705 (960)
T KOG1992|consen 655 FIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQ 705 (960)
T ss_pred HHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHHHHhhcCCcHHHHHHHH
Confidence 777777777777654332 11233 3466777777664
No 268
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=88.08 E-value=11 Score=41.28 Aligned_cols=134 Identities=13% Similarity=0.079 Sum_probs=90.2
Q ss_pred hcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHh-cCCChhHHHHHHHHHHHHhccCCcc
Q 005282 233 ECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLL-SSSCSESKREAALLLGQFAAADSNS 311 (704)
Q Consensus 233 ~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~ 311 (704)
...++|.|...+++.+..++..++..+..++..-+ -..+..-++|.+..+. .+.+..++..++.++..+..
T Consensus 387 ~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q----- 458 (700)
T KOG2137|consen 387 KEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ----- 458 (700)
T ss_pred HHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH-----
Confidence 34578888888889999999999999999985433 3455666778877664 45567788999999988862
Q ss_pred hHHHHhcCChHHHHHh---hCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhH
Q 005282 312 KVHIVQRGAVRPLIEM---LQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSL 376 (704)
Q Consensus 312 ~~~~~~~~~i~~L~~l---l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v 376 (704)
.+-...+++.+..+ .+..++.+.-....+..++.........+.....++.++-+...+.-..
T Consensus 459 --~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~L~~ 524 (700)
T KOG2137|consen 459 --RLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPSLNG 524 (700)
T ss_pred --HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcccccH
Confidence 12223344444444 4567888877777777777755444344455566666666665444333
No 269
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=88.00 E-value=14 Score=33.53 Aligned_cols=158 Identities=17% Similarity=0.145 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHhhcCCchhhh------HH------hhCChHHHHHh-hcCCChhHHHHHHHHHHHcccCCchhhHHHhhC
Q 005282 335 LKEMSAFALGRLAQDTHNQAG------IA------QDGGILPLLKL-LDSKNGSLQHNAAFALYGLADNEDNVADLVRVG 401 (704)
Q Consensus 335 v~~~a~~~L~~l~~~~~~~~~------~~------~~~~~~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g 401 (704)
+|..|+.+|..++...+.+.. +. ..+.-..|+.+ +.+.++.+|..|+.+|..+-.... ..+..+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk--~~L~~Ae 79 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSK--PFLAQAE 79 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccH--HHHHHHH
Confidence 566777777777766332211 11 11233445554 578899999999999999976542 2222211
Q ss_pred CcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhh-ccHHHHHHHHHHHHhccCCCccceeeecCCc----
Q 005282 402 GVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRV-ADRAVKRRVTLALAHLCAPDDCKTIFIDNNG---- 476 (704)
Q Consensus 402 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~---- 476 (704)
--. ....+.-+....++..+..++. .|+..+.. .+..+...++.++..|.......+. ..|-
T Consensus 80 ~~~---~~~~sFtslS~tLa~~i~~lH~--------~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL--~~~ll~~~ 146 (182)
T PF13251_consen 80 ESK---GPSGSFTSLSSTLASMIMELHR--------GLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRL--PPGLLTEV 146 (182)
T ss_pred hcC---CCCCCcccHHHHHHHHHHHHHH--------HHHHHHhcccccHHHHHHHHHHHHHHccCChhhc--CHhHHHHH
Confidence 100 0011111122233333333322 45555544 4677888899999998654443332 2343
Q ss_pred HHHHHHHHhhcchhhhhhHHHHHHHHhhhcC
Q 005282 477 LELLLGLLESTSVKQREESSVALYKLATKAT 507 (704)
Q Consensus 477 i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~ 507 (704)
+..+..++.+.+++++..+..++..+..-.+
T Consensus 147 v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 147 VTQVRPLLRHRDPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCC
Confidence 4455566677999999999999998877554
No 270
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.72 E-value=7.2 Score=37.97 Aligned_cols=141 Identities=15% Similarity=0.165 Sum_probs=94.1
Q ss_pred cHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 005282 195 IPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVI 274 (704)
Q Consensus 195 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 274 (704)
+...+..|.+++++....++..+..|+...++....... .++-.+++-+++....|-+.|+.+++.+.+.-.....
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~--- 165 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID--- 165 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 344666777888888888888888887644433322222 2566778888889999999999999999855322222
Q ss_pred HcCCHHHHHHHhc----CCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 005282 275 LAGALQPVIGLLS----SSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQ 348 (704)
Q Consensus 275 ~~~~l~~L~~ll~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 348 (704)
+ .++.++..|. ..+.-++..|-.+|..+..+-.. ..+++.|+..+++..+.++..++....++..
T Consensus 166 ~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp-------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~ 234 (334)
T KOG2933|consen 166 Q--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP-------QKLLRKLIPILQHSNPRVRAKAALCFSRCVI 234 (334)
T ss_pred H--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh-------HHHHHHHHHHHhhhchhhhhhhhccccccce
Confidence 1 3444443332 23344688888888888643222 2357888888888888888888777766653
No 271
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=87.66 E-value=38 Score=35.23 Aligned_cols=126 Identities=11% Similarity=0.171 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHhhcCChh----hHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhcc
Q 005282 117 EVEKECAFALGLLAVKPE----HQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVE 192 (704)
Q Consensus 117 ~v~~~a~~~L~~l~~~~~----~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 192 (704)
+-+-.|.-...+++.+.+ +++.+.++-+.+.+-+++.+.+.+.. .++.-.+..++..|.-+|. .|+...-----
T Consensus 26 ~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~d-cpd~Vy~~i~itvLacFC~-~pElAsh~~~v 103 (698)
T KOG2611|consen 26 EERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGD-CPDDVYLQISITVLACFCR-VPELASHEEMV 103 (698)
T ss_pred HHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCC-CcHHHHHHHHHHHHHHHhC-ChhhccCHHHH
Confidence 677788888888884433 56678999999999999987654332 2334567777888888886 44443322223
Q ss_pred CCcHHHHHHhcCC-C------HHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc
Q 005282 193 DGIPPLVELLKFV-D------VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR 245 (704)
Q Consensus 193 ~~i~~L~~ll~~~-~------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~ 245 (704)
+.||.|..++... + ..+...+-.+|..++. .+.....++..|+++.+.+.-.
T Consensus 104 ~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~-~e~G~~~Lia~G~~~~~~Q~y~ 162 (698)
T KOG2611|consen 104 SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVAT-AEAGLMTLIASGGLRVIAQMYE 162 (698)
T ss_pred HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhc-CCchhHHHHhcCchHHHHHHHh
Confidence 5688899888732 2 2377888899999996 6888888999999999987654
No 272
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=86.96 E-value=2.6 Score=33.35 Aligned_cols=72 Identities=15% Similarity=0.104 Sum_probs=57.1
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCc
Q 005282 237 LPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSN 310 (704)
Q Consensus 237 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 310 (704)
....+..+.++.+.+|..++..|..+..... .......+++..+...+.++++-+--+|+.+|..++...++
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 4556777889999999999999999997755 12222356788888999999999999999999999864443
No 273
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=86.86 E-value=49 Score=35.59 Aligned_cols=276 Identities=14% Similarity=0.117 Sum_probs=135.4
Q ss_pred HHHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHH
Q 005282 46 DIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFA 125 (704)
Q Consensus 46 ~~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~ 125 (704)
.++.+......++.. +....++..++..|..+............ ..+...+..... ++--..-+.+
T Consensus 25 ~i~~iW~~~~DLi~~-~~p~e~R~~~~~ll~~~i~~~~~~~~~~R----~~fF~~I~~~~~---------~~d~~~~l~a 90 (464)
T PF11864_consen 25 SIEEIWYAAKDLIDP-NQPSEARRAALELLIACIKRQDSSSGLMR----AEFFRDISDPSN---------DDDFDLRLEA 90 (464)
T ss_pred HHHHHHHHHhhhcCC-CCCHHHHHHHHHHHHHHHHccccccHHHH----HHHHHHHhcCCC---------chhHHHHHHH
Confidence 455555555555533 33445677778888777664322111111 223333344332 1333355666
Q ss_pred HHhhc-CChhhHHHHHHcCCcHHHHHHHhhccC-----------------CCCC--cchhHHHHHHHHHHHHhhhcChhh
Q 005282 126 LGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKN-----------------GGNS--RALSGVIRRAADAITNLAHENANI 185 (704)
Q Consensus 126 L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~-----------------~~~~--~~~~~~~~~a~~~L~~l~~~~~~~ 185 (704)
|..|+ ++.+. ...+.+..+.|...+..... .... ..+.......+..+.++...+...
T Consensus 91 L~~LT~~Grdi--~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~ 168 (464)
T PF11864_consen 91 LIALTDNGRDI--DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNY 168 (464)
T ss_pred HHHHHcCCcCc--hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCC
Confidence 66667 44444 23567788888887754320 0000 001133344444555555433332
Q ss_pred hhhhhccCCcHHHHHHhc-CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 005282 186 KTRVRVEDGIPPLVELLK-FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVH 264 (704)
Q Consensus 186 ~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 264 (704)
-..-.-.+.+..++.+.. ..++...+.++..+-.+.....-....+. .++..|..... ..+....+-.++.||+.
T Consensus 169 l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~--~~i~vLCsi~~--~~~l~~~~w~~m~nL~~ 244 (464)
T PF11864_consen 169 LDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLS--PCIEVLCSIVN--SVSLCKPSWRTMRNLLK 244 (464)
T ss_pred CCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHH--HHHHHHhhHhc--ccccchhHHHHHHHHHc
Confidence 222222334444444443 23344445555555555432211111111 11233333322 22666677788888885
Q ss_pred CChhhHHHHHHcCCHHHHHHHhcC------CChhHHHHHHHHHHHHhccCCcchHHHHh-c--CChHHHHHhhCCCCHHH
Q 005282 265 SSPSIKKEVILAGALQPVIGLLSS------SCSESKREAALLLGQFAAADSNSKVHIVQ-R--GAVRPLIEMLQSPDSQL 335 (704)
Q Consensus 265 ~~~~~~~~~~~~~~l~~L~~ll~~------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~--~~i~~L~~ll~~~~~~v 335 (704)
..-. ...+..|..+|.+ .+..+.+-|+..+..+..+..+....-+. . -+++.+...++.+++.+
T Consensus 245 S~~g-------~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v 317 (464)
T PF11864_consen 245 SHLG-------HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRV 317 (464)
T ss_pred CccH-------HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCee
Confidence 4321 1235677777732 23445667788888777655322221111 2 26788888888777666
Q ss_pred HHHHHHHHHHhhc
Q 005282 336 KEMSAFALGRLAQ 348 (704)
Q Consensus 336 ~~~a~~~L~~l~~ 348 (704)
-..+...+.++..
T Consensus 318 ~~eIl~~i~~ll~ 330 (464)
T PF11864_consen 318 DYEILLLINRLLD 330 (464)
T ss_pred hHHHHHHHHHHHh
Confidence 6666677766664
No 274
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=86.34 E-value=1.9 Score=39.78 Aligned_cols=78 Identities=14% Similarity=0.208 Sum_probs=60.0
Q ss_pred hhhhhhccCCcHHHHHHhc---------CCCHHHHHHHHHHHHHhccCCchhhHHhH-hcCChHHHHHhhcCCCHHHHHH
Q 005282 185 IKTRVRVEDGIPPLVELLK---------FVDVKVQRAAAGALRTLAFKNDENKKLIV-ECNALPTLVLMLRSEDASVHFE 254 (704)
Q Consensus 185 ~~~~~~~~~~i~~L~~ll~---------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~L~~lL~~~~~~v~~~ 254 (704)
.-..++..||+..|+.+|. ..+......++.|+..+.. +......+. ..+++..|...|.+++..++..
T Consensus 99 Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n-~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~ 177 (187)
T PF06371_consen 99 WVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMN-TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKL 177 (187)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTS-SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHc-cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHH
Confidence 3445667788888888776 2456888999999999995 555555555 5788999999999999999999
Q ss_pred HHHHHHHHh
Q 005282 255 AVGVIGNLV 263 (704)
Q Consensus 255 a~~~L~~l~ 263 (704)
++.+|..+|
T Consensus 178 ~leiL~~lc 186 (187)
T PF06371_consen 178 ALEILAALC 186 (187)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998876
No 275
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=85.42 E-value=8.6 Score=34.23 Aligned_cols=148 Identities=13% Similarity=0.110 Sum_probs=84.6
Q ss_pred HHHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHH
Q 005282 46 DIRAQIDILNSKFSSDETDRAAAKTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAF 124 (704)
Q Consensus 46 ~~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~ 124 (704)
.-|++++.|..++..+ .+..++++++++|+-+.. ||-..+.+... .+ ..- ..+. +........
T Consensus 7 ~yP~LL~~L~~iLk~e-~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~---~~~-~~~~--------~~~~~~~~l- 70 (160)
T PF11865_consen 7 DYPELLDILLNILKTE-QSQSIRREALRVLGILGALDPYKHKSIQKS--LD---SKS-SENS--------NDESTDISL- 70 (160)
T ss_pred HhHHHHHHHHHHHHhC-CCHHHHHHHHHHhhhccccCcHHHhccccc--CC---ccc-cccc--------cccchhhHH-
Confidence 3578889998888766 447799999999999876 66544432111 11 000 0000 001121111
Q ss_pred HHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc
Q 005282 125 ALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLK 203 (704)
Q Consensus 125 ~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~ 203 (704)
...... ..+++ .-..++..|++.|+++.-. .-...++.++.++... ...+..-.-..++|.++..++
T Consensus 71 ~~~~~~~~~ee~----y~~vvi~~L~~iL~D~sLs-------~~h~~vv~ai~~If~~-l~~~cv~~L~~viP~~l~~i~ 138 (160)
T PF11865_consen 71 PMMGISPSSEEY----YPTVVINALMRILRDPSLS-------SHHTAVVQAIMYIFKS-LGLKCVPYLPQVIPIFLRVIR 138 (160)
T ss_pred hhccCCCchHHH----HHHHHHHHHHHHHHhhhhH-------HHHHHHHHHHHHHHHh-cCcCchhHHHHHhHHHHHHHH
Confidence 111222 23333 3334578889988887653 3344566666666632 323333444567888889898
Q ss_pred CCCHHHHHHHHHHHHHhc
Q 005282 204 FVDVKVQRAAAGALRTLA 221 (704)
Q Consensus 204 ~~~~~~~~~a~~~L~~l~ 221 (704)
..++..++....-|..|.
T Consensus 139 ~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 139 TCPDSLREFYFQQLADLV 156 (160)
T ss_pred hCCHHHHHHHHHHHHHHH
Confidence 777778877766666654
No 276
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.20 E-value=59 Score=37.46 Aligned_cols=262 Identities=19% Similarity=0.142 Sum_probs=154.8
Q ss_pred HHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcCCcHHHH
Q 005282 72 SHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTGALPHLV 149 (704)
Q Consensus 72 ~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~ 149 (704)
..+|..+.. +.++.+.+.+++++..+++++-++ +-|...++++..|. .+|.... +.-+-.++
T Consensus 663 wDcLisllKnnteNqklFreanGvklilpflind------------ehRSslLrivscLitvdpkqvh----hqelmalV 726 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFREANGVKLILPFLIND------------EHRSSLLRIVSCLITVDPKQVH----HQELMALV 726 (2799)
T ss_pred HHHHHHHHhccchhhHHHHhhcCceEEEEeeech------------HHHHHHHHHHHHHhccCccccc----HHHHHHHH
Confidence 345555555 578888888999999999998443 56777777777777 5554211 11234667
Q ss_pred HHHhhccCCC---C-CcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc----------CCCHHHHHHHHH
Q 005282 150 SLLKQYKNGG---N-SRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLK----------FVDVKVQRAAAG 215 (704)
Q Consensus 150 ~lL~~~~~~~---~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~----------~~~~~~~~~a~~ 215 (704)
..|++..... . .+....+....+.+++.+..-+...+..+.+.++...|...|- .+|..+...-..
T Consensus 727 dtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfk 806 (2799)
T KOG1788|consen 727 DTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFK 806 (2799)
T ss_pred HHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHH
Confidence 7777632210 0 0111255666777888888777778888999999888776653 122222222222
Q ss_pred HHHH---hc-cCCchhhHHhHhcCChHHHHHhhcCC--------------------------CHHHHHHHHHHHHHHhcC
Q 005282 216 ALRT---LA-FKNDENKKLIVECNALPTLVLMLRSE--------------------------DASVHFEAVGVIGNLVHS 265 (704)
Q Consensus 216 ~L~~---l~-~~~~~~~~~~~~~~~i~~L~~lL~~~--------------------------~~~v~~~a~~~L~~l~~~ 265 (704)
.|.. ++ ..++.++..+...=.-+.+..+|+.. +-.--..||..+-.+-.+
T Consensus 807 ilFrlfTlavcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfeledn 886 (2799)
T KOG1788|consen 807 ILFRLFTLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDN 886 (2799)
T ss_pred HHHHHHHHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccc
Confidence 2221 11 12555554443322233333333311 111111222222221100
Q ss_pred ----------ChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhC---CCC
Q 005282 266 ----------SPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQ---SPD 332 (704)
Q Consensus 266 ----------~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~---~~~ 332 (704)
.....+.+...|++..++..+-...+..+.+-...+..++..++.+.......|.++.|+.+.. +++
T Consensus 887 ifavntPsGqfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgs 966 (2799)
T KOG1788|consen 887 IFAVNTPSGQFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGS 966 (2799)
T ss_pred eeeeccCCCCcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCC
Confidence 0112355677899999998887778888888889999999888888888888899999888764 445
Q ss_pred HHHHHHHHHHHHHhhcC
Q 005282 333 SQLKEMSAFALGRLAQD 349 (704)
Q Consensus 333 ~~v~~~a~~~L~~l~~~ 349 (704)
.....++...+..++..
T Consensus 967 spfLshalkIvemLgay 983 (2799)
T KOG1788|consen 967 SPFLSHALKIVEMLGAY 983 (2799)
T ss_pred chHhhccHHHHHHHhhc
Confidence 55566666666666643
No 277
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=85.19 E-value=46 Score=33.82 Aligned_cols=158 Identities=13% Similarity=0.151 Sum_probs=112.6
Q ss_pred cHHHHHHhcCCCHHHHHHHHHHHHHhcc-CCchhhHHhHh-cC-ChHHHHHhhcCC-----C--------HHHHHHHHHH
Q 005282 195 IPPLVELLKFVDVKVQRAAAGALRTLAF-KNDENKKLIVE-CN-ALPTLVLMLRSE-----D--------ASVHFEAVGV 258 (704)
Q Consensus 195 i~~L~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~-~~-~i~~L~~lL~~~-----~--------~~v~~~a~~~ 258 (704)
+..+.+.|.+..+.+...++..|..++. +.......+.. -+ ..+.+.+++... + +.+|...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6678888888888899999999999987 55455555443 23 245566666411 1 2888888876
Q ss_pred HHHHhc-CChhhHHHHHH-cCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCC----cchHHHHhcCChHHHHHhhCCCC
Q 005282 259 IGNLVH-SSPSIKKEVIL-AGALQPVIGLLSSSCSESKREAALLLGQFAAADS----NSKVHIVQRGAVRPLIEMLQSPD 332 (704)
Q Consensus 259 L~~l~~-~~~~~~~~~~~-~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~----~~~~~~~~~~~i~~L~~ll~~~~ 332 (704)
+..+.. .++..+..+.. .+.+..+.+-|..++.++....+.+|..-.-.++ ..+..+.....+..|..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 666554 45556666664 5678888888888888888888888885443333 33445666678899999887666
Q ss_pred H----HHHHHHHHHHHHhhcCCch
Q 005282 333 S----QLKEMSAFALGRLAQDTHN 352 (704)
Q Consensus 333 ~----~v~~~a~~~L~~l~~~~~~ 352 (704)
+ .+...+-..|..+|.++..
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p~~ 241 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDPKH 241 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCCCc
Confidence 6 8999999999999976543
No 278
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=85.14 E-value=68 Score=35.68 Aligned_cols=164 Identities=17% Similarity=0.159 Sum_probs=94.7
Q ss_pred CcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhh----cChhhhhhhhccCCcHHHHHHhc----CCCHHHHHHHHH
Q 005282 144 ALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAH----ENANIKTRVRVEDGIPPLVELLK----FVDVKVQRAAAG 215 (704)
Q Consensus 144 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~~~~i~~L~~ll~----~~~~~~~~~a~~ 215 (704)
.+..+..+++++..... ..+...|+.+++.+.. ..+.+. .......++.+...|. ..+.+-+...+.
T Consensus 394 ~l~~l~~l~~~~~~~~~----~~l~~sa~l~~~~lv~~~c~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lk 468 (574)
T smart00638 394 ILKALFELAESPEVQKQ----PYLRESALLAYGSLVRRYCVNTPSCP-DFVLEELLKYLHELLQQAVSKGDEEEIQLYLK 468 (574)
T ss_pred HHHHHHHHhcCcccccc----HHHHHHHHHHHHHHHHHHhcCCCCCC-hhhHHHHHHHHHHHHHHHHhcCCchheeeHHH
Confidence 35667777776533221 2667777777777653 222111 1222345566666554 345666777888
Q ss_pred HHHHhccCCchhhHHhHhcCChHHHHHhhc---CCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcC--CC
Q 005282 216 ALRTLAFKNDENKKLIVECNALPTLVLMLR---SEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSS--SC 290 (704)
Q Consensus 216 ~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~--~~ 290 (704)
+|+|+.. + ..++.+..++. .....+|..|+++|..++...+.. +-+.++.++.+ .+
T Consensus 469 aLGN~g~--~---------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~ 529 (574)
T smart00638 469 ALGNAGH--P---------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEP 529 (574)
T ss_pred hhhccCC--h---------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCC
Confidence 8888874 1 23455555554 235689999999999987544432 23456666643 45
Q ss_pred hhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCC-CCHHHHHHHHH
Q 005282 291 SESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQS-PDSQLKEMSAF 341 (704)
Q Consensus 291 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~ 341 (704)
+++|..|..+|... +|.. ..+..+...+.. ++..|...+..
T Consensus 530 ~EvRiaA~~~lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~sfv~S 571 (574)
T smart00638 530 PEVRMAAVLVLMET---KPSV-------ALLQRIAELLNKEPNLQVASFVYS 571 (574)
T ss_pred hHHHHHHHHHHHhc---CCCH-------HHHHHHHHHHhhcCcHHHHHHhHH
Confidence 67777777766543 2332 235666666654 45566554443
No 279
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.18 E-value=17 Score=35.53 Aligned_cols=139 Identities=16% Similarity=0.229 Sum_probs=90.5
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHh
Q 005282 279 LQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQ 358 (704)
Q Consensus 279 l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 358 (704)
+...+..|.+.++.....++..+..++..+++.....+ +.++-.+++-+++....|-..|+.++..+.+.-.+...-
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~-- 166 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ-- 166 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 45566777888888888888888888865554333222 245666777778888889999999999988664433222
Q ss_pred hCChHH-HHHhhcC---CChhHHHHHHHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcc
Q 005282 359 DGGILP-LLKLLDS---KNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGR 434 (704)
Q Consensus 359 ~~~~~~-L~~ll~~---~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (704)
.+.. +..+++. ++.-+++.|-.+|..+..+..-..
T Consensus 167 --~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~--------------------------------------- 205 (334)
T KOG2933|consen 167 --ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK--------------------------------------- 205 (334)
T ss_pred --HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH---------------------------------------
Confidence 2233 3344433 344578888888888754322211
Q ss_pred hhHHHHHHHhhccHHHHHHHHHHHHhc
Q 005282 435 VLNHLLYLLRVADRAVKRRVTLALAHL 461 (704)
Q Consensus 435 ~~~~L~~ll~~~~~~v~~~a~~~L~~l 461 (704)
+++.|+..+...++.++..++....++
T Consensus 206 ~L~~L~~~~~~~n~r~r~~a~~~~~~~ 232 (334)
T KOG2933|consen 206 LLRKLIPILQHSNPRVRAKAALCFSRC 232 (334)
T ss_pred HHHHHHHHHhhhchhhhhhhhcccccc
Confidence 344566667777888887777666555
No 280
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=83.31 E-value=80 Score=38.07 Aligned_cols=175 Identities=15% Similarity=0.082 Sum_probs=96.2
Q ss_pred cCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHccc-CCchhhH
Q 005282 318 RGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD-NEDNVAD 396 (704)
Q Consensus 318 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~ 396 (704)
.+++|.|-.-|.+.+..+|..|...++.+......+..-.........+.-+.+.+.+||..++....++-. +|+....
T Consensus 258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~ 337 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKA 337 (1266)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhH
Confidence 478999999999999999999999999998776544331112334456666778889999998887766653 4443332
Q ss_pred HHhhCCcc-cccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccC------CCccce
Q 005282 397 LVRVGGVQ-KLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCA------PDDCKT 469 (704)
Q Consensus 397 l~~~g~i~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~------~~~~~~ 469 (704)
....-.+. ...+....+....-...-...+....+...++..+...+++....||..|...|..+-. +...+.
T Consensus 338 ~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~~~~~~k~ 417 (1266)
T KOG1525|consen 338 STILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCLRSAGGKE 417 (1266)
T ss_pred HHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCccc
Confidence 22211111 11111111111000000001111111111155666677788889999999999987722 333333
Q ss_pred eeecCCcHH-HHHHHHhhcchhhh
Q 005282 470 IFIDNNGLE-LLLGLLESTSVKQR 492 (704)
Q Consensus 470 ~l~~~~~i~-~L~~ll~~~~~~~~ 492 (704)
.-.....|+ .|+.++...+.+.+
T Consensus 418 ~t~~~swIp~kLL~~~y~~~~~~r 441 (1266)
T KOG1525|consen 418 ITPPFSWIPDKLLHLYYENDLDDR 441 (1266)
T ss_pred ccccccccchhHHhhHhhccccHH
Confidence 322233333 45555554433333
No 281
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=83.27 E-value=48 Score=36.11 Aligned_cols=179 Identities=20% Similarity=0.144 Sum_probs=99.6
Q ss_pred HHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhc---CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHc
Q 005282 200 ELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVEC---NALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILA 276 (704)
Q Consensus 200 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~---~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 276 (704)
..+..-.++++..|+.+|+.+..+...+-...-.. +.+..++..+. .++..+..++++|.|+..+ +..++.+...
T Consensus 551 ~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~ 628 (745)
T KOG0301|consen 551 AILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSR 628 (745)
T ss_pred HHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHH
Confidence 33445567788889999998886433332222211 23444444444 5678888999999999866 6555544432
Q ss_pred --CCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhcC
Q 005282 277 --GALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQS-----PDSQLKEMSAFALGRLAQD 349 (704)
Q Consensus 277 --~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-----~~~~v~~~a~~~L~~l~~~ 349 (704)
..+..+...=..++..++...+....|++..- .+.-.+.+..+.+...+.. ++.+.....+.||++|+..
T Consensus 629 ~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l---~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~ 705 (745)
T KOG0301|consen 629 LESILDPVIEASSLSNKNLQIALATLALNYSVLL---IQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTV 705 (745)
T ss_pred HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHH---HhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccc
Confidence 12222222222233344443333333433110 0000113445555554432 3445556678889999999
Q ss_pred CchhhhHHhhCChHHHHHhhcC-CChhHHHHHHHH
Q 005282 350 THNQAGIAQDGGILPLLKLLDS-KNGSLQHNAAFA 383 (704)
Q Consensus 350 ~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~~ 383 (704)
+....++.+.-.+..+++-+++ .+.+..+..+..
T Consensus 706 ~~~~~~~A~~~~v~sia~~~~~~~~~~~~k~~a~~ 740 (745)
T KOG0301|consen 706 DASVIQLAKNRSVDSIAKKLKEAVSNPSGKNIARD 740 (745)
T ss_pred cHHHHHHHHhcCHHHHHHHHHHhccCchhhHHHHH
Confidence 9888888888888888877754 333444444443
No 282
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=83.11 E-value=14 Score=33.20 Aligned_cols=110 Identities=15% Similarity=0.186 Sum_probs=71.5
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHc--CCHHHHHHHhcCCChh-HHHHHHHHHHHHh---ccCC
Q 005282 236 ALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILA--GALQPVIGLLSSSCSE-SKREAALLLGQFA---AADS 309 (704)
Q Consensus 236 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~l~~L~~ll~~~~~~-~~~~a~~~L~~l~---~~~~ 309 (704)
.+..+..+|++.++.-|..++..+.-+++.++. +.+.+. ..+..++.+++.+++. +...++.++..+. .+.+
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 356688899999999999999999988866422 333332 3678888888776554 5677777776664 3344
Q ss_pred cchHHHHhc---CChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q 005282 310 NSKVHIVQR---GAVRPLIEMLQSPDSQLKEMSAFALGRLAQD 349 (704)
Q Consensus 310 ~~~~~~~~~---~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 349 (704)
+..+.+... ++++.++.+++. ......++.+|..+...
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH 144 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence 444444332 344555555544 45667778888777653
No 283
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=83.00 E-value=7.7 Score=38.15 Aligned_cols=150 Identities=19% Similarity=0.160 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHcC--CcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccC-
Q 005282 117 EVEKECAFALGLLAVKPEHQQIIVDTG--ALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVED- 193 (704)
Q Consensus 117 ~v~~~a~~~L~~l~~~~~~~~~~~~~g--~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~- 193 (704)
+-+--++-.++-++-++.....+...+ ....+..++....... .+..+..++++++|+.. ++..+..+....
T Consensus 78 ~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~ml~lR~l~NlF~-~~~~~~~~~~~~~ 152 (268)
T PF08324_consen 78 ESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSS----PPANQMLALRLLANLFS-HPPGRQLLLSHFD 152 (268)
T ss_dssp CC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTS----SHHHHHHHHHHHHHHTT-SCCCHHHHHCTHH
T ss_pred ccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCC----cHHHHHHHHHHHHHhhC-CCccHHHHHhccc
Confidence 446667777777777777666655443 2455566665544321 23788899999999986 444555554433
Q ss_pred -CcHHHHHHhcCC----CHHHHHHHHHHHHHhccCCchhh-HHhHhcCChHHHHHhhc--CCCHHHHHHHHHHHHHHhcC
Q 005282 194 -GIPPLVELLKFV----DVKVQRAAAGALRTLAFKNDENK-KLIVECNALPTLVLMLR--SEDASVHFEAVGVIGNLVHS 265 (704)
Q Consensus 194 -~i~~L~~ll~~~----~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~ 265 (704)
.+...+..+... +..++..+...+.|++......+ ..-.....+..+...+. ..+++....++-+++++...
T Consensus 153 ~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~ 232 (268)
T PF08324_consen 153 SSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSS 232 (268)
T ss_dssp TCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCC
T ss_pred chHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhcc
Confidence 233333333333 78899999999999975211111 10011113455555332 26899999999999999966
Q ss_pred ChhhHH
Q 005282 266 SPSIKK 271 (704)
Q Consensus 266 ~~~~~~ 271 (704)
++....
T Consensus 233 ~~~~~~ 238 (268)
T PF08324_consen 233 SDSAKQ 238 (268)
T ss_dssp SHHHHH
T ss_pred ChhHHH
Confidence 544433
No 284
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=82.28 E-value=13 Score=41.76 Aligned_cols=198 Identities=17% Similarity=0.156 Sum_probs=105.7
Q ss_pred CcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcC-hhhhhhhhccCCcHHHHHHhcC----CCHHHHHHHHHHHH
Q 005282 144 ALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHEN-ANIKTRVRVEDGIPPLVELLKF----VDVKVQRAAAGALR 218 (704)
Q Consensus 144 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~ll~~----~~~~~~~~a~~~L~ 218 (704)
++..+.+++.+...+ -..+...|..+.... .+.. ..+..+..++.+ .++.++..|+-+++
T Consensus 396 av~~i~~~I~~~~~~---------~~ea~~~l~~l~~~~~~Pt~------e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~ 460 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLT---------DDEAAQLLASLPFHVRRPTE------ELLKELFELAKSPKVKNSPYLRETALLSLG 460 (618)
T ss_dssp HHHHHHHHHHTT-S----------HHHHHHHHHHHHHT-----H------HHHHHHHHHHT-HHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCC---------HHHHHHHHHHHHhhcCCCCH------HHHHHHHHHHhCccccCChhHHHHHHHHHH
Confidence 456677777764431 122444455544322 1111 234456666653 45778888888888
Q ss_pred HhccC---Cc------hhhHHhHhcCChHHHHHhhc----CCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHH
Q 005282 219 TLAFK---ND------ENKKLIVECNALPTLVLMLR----SEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGL 285 (704)
Q Consensus 219 ~l~~~---~~------~~~~~~~~~~~i~~L~~lL~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 285 (704)
.+... .. ..........+++.+...+. ..+...+..++.+|+|+-. + ..++.+..+
T Consensus 461 ~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--~---------~~i~~l~~~ 529 (618)
T PF01347_consen 461 SLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--P---------ESIPVLLPY 529 (618)
T ss_dssp HHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---G---------GGHHHHHTT
T ss_pred HHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--c---------hhhHHHHhH
Confidence 77531 10 01111222335666666665 4567888999999999952 2 246777777
Q ss_pred hcCC---ChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCCchhhhHHhhC
Q 005282 286 LSSS---CSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQS--PDSQLKEMSAFALGRLAQDTHNQAGIAQDG 360 (704)
Q Consensus 286 l~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 360 (704)
+... +..+|..|+++|..++...+. .+.+.|+.++.+ .++++|..|..+|... ++.. .
T Consensus 530 i~~~~~~~~~~R~~Ai~Alr~~~~~~~~--------~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~--~P~~-------~ 592 (618)
T PF01347_consen 530 IEGKEEVPHFIRVAAIQALRRLAKHCPE--------KVREILLPIFMNTTEDPEVRIAAYLILMRC--NPSP-------S 592 (618)
T ss_dssp STTSS-S-HHHHHHHHHTTTTGGGT-HH--------HHHHHHHHHHH-TTS-HHHHHHHHHHHHHT-----H-------H
T ss_pred hhhccccchHHHHHHHHHHHHHhhcCcH--------HHHHHHHHHhcCCCCChhHHHHHHHHHHhc--CCCH-------H
Confidence 7655 567789999999987643322 245677777754 5678888887666542 1111 1
Q ss_pred ChHHHHHhhc-CCChhHHHHHHHHH
Q 005282 361 GILPLLKLLD-SKNGSLQHNAAFAL 384 (704)
Q Consensus 361 ~~~~L~~ll~-~~~~~v~~~a~~~L 384 (704)
.+..+...+. +.+..|...+...|
T Consensus 593 ~l~~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 593 VLQRIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp HHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred HHHHHHHHHhhCchHHHHHHHHHhc
Confidence 2344455553 34566665554443
No 285
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=81.33 E-value=56 Score=31.85 Aligned_cols=174 Identities=13% Similarity=0.102 Sum_probs=96.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhcc-------CCchhhHHhHhcCChHHHHHhhcCCC----HHHHHHHHHHHHHHhcC
Q 005282 197 PLVELLKFVDVKVQRAAAGALRTLAF-------KNDENKKLIVECNALPTLVLMLRSED----ASVHFEAVGVIGNLVHS 265 (704)
Q Consensus 197 ~L~~ll~~~~~~~~~~a~~~L~~l~~-------~~~~~~~~~~~~~~i~~L~~lL~~~~----~~v~~~a~~~L~~l~~~ 265 (704)
.+++=+.++ .....++..|..++. +..+.+-.+.-...+|.++.-+.+++ ......++..|+.++..
T Consensus 68 Ll~KGL~Ss--~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~ 145 (262)
T PF14225_consen 68 LLLKGLRSS--STYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEA 145 (262)
T ss_pred HHhCccCCC--CcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHh
Confidence 333444433 344556666666653 12223333333445777777776666 24556677888888743
Q ss_pred ChhhHHHHHHcCCHHHHHHHhcC-CC---hhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHH
Q 005282 266 SPSIKKEVILAGALQPVIGLLSS-SC---SESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAF 341 (704)
Q Consensus 266 ~~~~~~~~~~~~~l~~L~~ll~~-~~---~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~ 341 (704)
.. .+.+..++..... .- .+-...++..|..-.. ++. +...+..|+.++.++.+.++..+..
T Consensus 146 ~~--------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~--P~~-----~~~~l~~Ll~lL~n~~~w~~~~~L~ 210 (262)
T PF14225_consen 146 QG--------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF--PDH-----EFQILTFLLGLLENGPPWLRRKTLQ 210 (262)
T ss_pred CC--------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC--chh-----HHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 21 1223334433322 21 2223344444443221 221 1245778999999999999999999
Q ss_pred HHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcc
Q 005282 342 ALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLA 388 (704)
Q Consensus 342 ~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~ 388 (704)
.|..+....+.+.. .....+.++.++++.....-.-.+.......+
T Consensus 211 iL~~ll~~~d~~~~-~~~dlispllrlL~t~~~~eAL~VLd~~v~~s 256 (262)
T PF14225_consen 211 ILKVLLPHVDMRSP-HGADLISPLLRLLQTDLWMEALEVLDEIVTRS 256 (262)
T ss_pred HHHHHhccccCCCC-cchHHHHHHHHHhCCccHHHHHHHHHHHHhhc
Confidence 99999977665544 44456888999997655433333333333333
No 286
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=81.24 E-value=13 Score=33.12 Aligned_cols=143 Identities=19% Similarity=0.116 Sum_probs=81.2
Q ss_pred ChHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHH
Q 005282 236 ALPTLVLMLRSE-DASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVH 314 (704)
Q Consensus 236 ~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 314 (704)
.++.|+.+|+.+ +..+|+.++++|+.|-.-+|...+.+....- .- .-...+........ .+. +.......
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~--~~--~~~~~~~~~~~~~l---~~~--~~~~~~ee 81 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD--SK--SSENSNDESTDISL---PMM--GISPSSEE 81 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC--cc--ccccccccchhhHH---hhc--cCCCchHH
Confidence 467788888754 6899999999999998777765542222111 00 00001111111111 111 11112223
Q ss_pred HHhcCChHHHHHhhCCCCH-HHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHc
Q 005282 315 IVQRGAVRPLIEMLQSPDS-QLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGL 387 (704)
Q Consensus 315 ~~~~~~i~~L~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l 387 (704)
..-.-++..|++.|++++- .-...+..++.++......+..-.-...++.+++.++..+...++....-|+.|
T Consensus 82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3334568888888887542 334467777777774433333333345678888888877778888877776665
No 287
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=80.55 E-value=16 Score=32.77 Aligned_cols=115 Identities=17% Similarity=0.188 Sum_probs=74.5
Q ss_pred CCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcC--ChHHHHHhhcCC-CHHHHHHHHHHHHHHhc---CC
Q 005282 193 DGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECN--ALPTLVLMLRSE-DASVHFEAVGVIGNLVH---SS 266 (704)
Q Consensus 193 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~--~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~---~~ 266 (704)
..+..+..++++++++-+..++..+...+..++ .+.+.+.+ .+..++..|+.+ .+.+.+.++.++..+.. +.
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 345568888999999999999998888885322 34444433 477888888864 45678888888877763 33
Q ss_pred hhhHHHHHHc---CCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcc
Q 005282 267 PSIKKEVILA---GALQPVIGLLSSSCSESKREAALLLGQFAAADSNS 311 (704)
Q Consensus 267 ~~~~~~~~~~---~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 311 (704)
++..+.+... ++++.++.++.+ ......++.+|..+...++..
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt 148 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTT 148 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCcc
Confidence 4444444432 345555555554 455667777777766555443
No 288
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=80.35 E-value=17 Score=35.78 Aligned_cols=162 Identities=18% Similarity=0.185 Sum_probs=92.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcC--ChHHHHHhhc----CCCHHHHHHHHHHHHHHhcCChhh
Q 005282 196 PPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECN--ALPTLVLMLR----SEDASVHFEAVGVIGNLVHSSPSI 269 (704)
Q Consensus 196 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~--~i~~L~~lL~----~~~~~v~~~a~~~L~~l~~~~~~~ 269 (704)
..+...+.+=.++-+..++..++-++. ++.....+...+ +...+..++. +..+..+..++++++|+..+ +..
T Consensus 66 ~~~~~~~~~Wp~~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~-~~~ 143 (268)
T PF08324_consen 66 ILLLKILLSWPPESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSH-PPG 143 (268)
T ss_dssp HHHHHHHCCS-CCC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTS-CCC
T ss_pred HHHHHHHHhCCCccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCC-Ccc
Confidence 334444443333456677888888775 555544444333 2444555444 34678889999999999876 444
Q ss_pred HHHHHH-cC-CHHHHHHHhcCC----ChhHHHHHHHHHHHHhccCCcch-HHHHhcCChHHHHHhh-CC-CCHHHHHHHH
Q 005282 270 KKEVIL-AG-ALQPVIGLLSSS----CSESKREAALLLGQFAAADSNSK-VHIVQRGAVRPLIEML-QS-PDSQLKEMSA 340 (704)
Q Consensus 270 ~~~~~~-~~-~l~~L~~ll~~~----~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~i~~L~~ll-~~-~~~~v~~~a~ 340 (704)
+..+.. .+ .+-..+..+... +..++..++..+.|++....... ..-....++..+...+ .. .++++...++
T Consensus 144 ~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~L 223 (268)
T PF08324_consen 144 RQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLL 223 (268)
T ss_dssp HHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHH
T ss_pred HHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHH
Confidence 444443 22 233333333332 56678888888888873211110 0000112355666633 33 6899999999
Q ss_pred HHHHHhhcCCchhhhHHhh
Q 005282 341 FALGRLAQDTHNQAGIAQD 359 (704)
Q Consensus 341 ~~L~~l~~~~~~~~~~~~~ 359 (704)
-+|+++...+.........
T Consensus 224 vAlGtL~~~~~~~~~~~~~ 242 (268)
T PF08324_consen 224 VALGTLLSSSDSAKQLAKS 242 (268)
T ss_dssp HHHHHHHCCSHHHHHHCCC
T ss_pred HHHHHHhccChhHHHHHHH
Confidence 9999999766655555543
No 289
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=80.31 E-value=6.5 Score=36.86 Aligned_cols=82 Identities=24% Similarity=0.291 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHhccCCchhhHHhHhcCC-------hHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHH-HcCC
Q 005282 208 KVQRAAAGALRTLAFKNDENKKLIVECNA-------LPTLVLMLR-SEDASVHFEAVGVIGNLVHSSPSIKKEVI-LAGA 278 (704)
Q Consensus 208 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~-------i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~ 278 (704)
.-|+.|+.+|+.|+. .+.|...+...+- +..|++++. ..++-.|+-|+-.|.+++..+......+. +.+.
T Consensus 139 SPqrlaLEaLcKLsV-~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSV-IENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhhe-eccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 458899999999996 5666666655543 445566665 46788999999999999998777665444 5788
Q ss_pred HHHHHHHhcCCC
Q 005282 279 LQPVIGLLSSSC 290 (704)
Q Consensus 279 l~~L~~ll~~~~ 290 (704)
+..|+.++.+..
T Consensus 218 i~~Li~FiE~a~ 229 (257)
T PF12031_consen 218 ISHLIAFIEDAE 229 (257)
T ss_pred HHHHHHHHHHHH
Confidence 999999987543
No 290
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=80.18 E-value=1.4 Score=41.12 Aligned_cols=89 Identities=22% Similarity=0.293 Sum_probs=67.7
Q ss_pred hhHHHHHHHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhh-ccHHHHH
Q 005282 374 GSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRV-ADRAVKR 452 (704)
Q Consensus 374 ~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~ 452 (704)
-.-|+.|+.+|+.|+-.+.|...++..+-...+.+ ++..|..++.. +++..++
T Consensus 138 lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~--------------------------l~~~L~r~l~~~e~~v~RE 191 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVIENNVDLILATPPFSRLER--------------------------LFHTLVRLLGMREDQVCRE 191 (257)
T ss_pred CCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHH--------------------------HHHHHHHHhccccchhHHH
Confidence 35799999999999998888888887666554332 45567777754 6778899
Q ss_pred HHHHHHHhccCCC--ccceeeecCCcHHHHHHHHhhcc
Q 005282 453 RVTLALAHLCAPD--DCKTIFIDNNGLELLLGLLESTS 488 (704)
Q Consensus 453 ~a~~~L~~l~~~~--~~~~~l~~~~~i~~L~~ll~~~~ 488 (704)
.|...|.+|+... -++.+-.+.+.|..|+.++....
T Consensus 192 fAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a~ 229 (257)
T PF12031_consen 192 FAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDAE 229 (257)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHHH
Confidence 9999999997643 44455567789999999998643
No 291
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=79.60 E-value=1.4 Score=43.09 Aligned_cols=55 Identities=15% Similarity=0.271 Sum_probs=47.0
Q ss_pred hhCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCh-hhhccchhcHHHH
Q 005282 631 QIISVENIMLMYELSEAYNATTLKQSCILFILEKFDKMRNKP-WFFRLIRCVLPEI 685 (704)
Q Consensus 631 ~~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~-~f~~L~~~~~~~l 685 (704)
..++++|++.++.=+....++.|.+.|+.|+..|+.+|+.++ ++.-|+.+.+..|
T Consensus 70 p~l~~~NvvsIliSS~FL~M~~Lve~cl~y~~~~~~~Iv~~~~nl~Cl~~~Ll~RL 125 (317)
T PF11822_consen 70 PSLTPSNVVSILISSEFLQMESLVEECLQYCHDHMSEIVASPCNLNCLNDNLLTRL 125 (317)
T ss_pred CcCCcCcEEEeEehhhhhccHHHHHHHHHHHHHhHHHHHcCCCCcccCCHHHHHHH
Confidence 357899999999999999999999999999999999999755 6777877655444
No 292
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=79.58 E-value=31 Score=37.97 Aligned_cols=133 Identities=18% Similarity=0.177 Sum_probs=90.1
Q ss_pred CCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHH
Q 005282 91 NGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRR 170 (704)
Q Consensus 91 ~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~ 170 (704)
..++|.|..-+++.+. .++..++..+..++..-+ ..++..-++|.|..+...... ..++..
T Consensus 388 ~~IlplL~~S~~~~~~----------~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~-------~~vkvn 448 (700)
T KOG2137|consen 388 EKILPLLYRSLEDSDV----------QIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTN-------LYVKVN 448 (700)
T ss_pred HHHHHHHHHHhcCcch----------hhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccc-------hHHHHH
Confidence 4457888888888765 899999999999984333 344555567888777444333 278889
Q ss_pred HHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCC
Q 005282 171 AADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSE 247 (704)
Q Consensus 171 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~ 247 (704)
++.+++.+.. ..+.......+.++.+..+..++.+....+.+...+....+.. ..+....++|.++.+...+
T Consensus 449 ~L~c~~~l~q----~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 449 VLPCLAGLIQ----RLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred HHHHHHHHHH----HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhcc
Confidence 9999999882 1222233344566666667889999988888888887633333 4455556778777776543
No 293
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=77.51 E-value=51 Score=29.99 Aligned_cols=114 Identities=23% Similarity=0.185 Sum_probs=74.1
Q ss_pred cHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcC-------------------ChHHHHHhhc-CCCHHHHHH
Q 005282 195 IPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECN-------------------ALPTLVLMLR-SEDASVHFE 254 (704)
Q Consensus 195 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-------------------~i~~L~~lL~-~~~~~v~~~ 254 (704)
...+.-++.++++.+|..|+.++..+-.+....-....+.+ .=..|+..|. ..+..+...
T Consensus 42 ~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q 121 (182)
T PF13251_consen 42 PSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQ 121 (182)
T ss_pred cchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHH
Confidence 34455566689999999999999999865432221111111 1122344444 347788889
Q ss_pred HHHHHHHHhcCChhhHHH-HHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccC
Q 005282 255 AVGVIGNLVHSSPSIKKE-VILAGALQPVIGLLSSSCSESKREAALLLGQFAAAD 308 (704)
Q Consensus 255 a~~~L~~l~~~~~~~~~~-~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 308 (704)
.+.++..+.+..|..+-. -.-..++..+..++.+.+.+++..++.+++.+.+..
T Consensus 122 ~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 122 LLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 999999999887764421 111234455556677889999999999998887533
No 294
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=76.59 E-value=99 Score=32.07 Aligned_cols=293 Identities=18% Similarity=0.120 Sum_probs=156.6
Q ss_pred CchhhHHHHHHHHHHHHhhhccCC-----chhhHHHHHHHHHHHHHhhcChhHHHHHHhCC---ChHHHHhhccCCCcCC
Q 005282 37 GATQQDLVQDIRAQIDILNSKFSS-----DETDRAAAKTASHALVEFAKNEEIVSLIVDNG---AVPALVEHLQTPPQLT 108 (704)
Q Consensus 37 ~~~~~~~~~~~~~l~~~l~~~~~~-----~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g---~i~~L~~lL~~~~~~~ 108 (704)
..+.+.+...++-+++.+..-+.. +..+..+..+|++.|..+..+++....+-+.- ++...+..+..++.
T Consensus 27 ~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~-- 104 (372)
T PF12231_consen 27 LPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNS-- 104 (372)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCC--
Confidence 344566677777777776554432 22355678899999999988887776664331 45667777777765
Q ss_pred CCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccC-CCCCcchhHHHHHHHHHHHHhhhcChhhhh
Q 005282 109 NAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKN-GGNSRALSGVIRRAADAITNLAHENANIKT 187 (704)
Q Consensus 109 ~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~-~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 187 (704)
+..+....+++|..---.+. +.....+..++..+..-.+ -.+ ..+....+.++.++....|.. .
T Consensus 105 ------~K~i~~~~l~~ls~Q~f~~~----~~~~~~~~~l~~~l~~i~~~~~s----~si~~erL~i~~~ll~q~p~~-M 169 (372)
T PF12231_consen 105 ------PKSICTHYLWCLSDQKFSPK----IMTSDRVERLLAALHNIKNRFPS----KSIISERLNIYKRLLSQFPQQ-M 169 (372)
T ss_pred ------CHHHHHHHHHHHHcCCCCCc----ccchhhHHHHHHHHHHhhccCCc----hhHHHHHHHHHHHHHHHHHHH-H
Confidence 45677777777766543322 3344455566666655442 111 277888888999988655543 1
Q ss_pred hhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchh---hHH---hHh----cC-----ChHHHHHhhcCCCHHHH
Q 005282 188 RVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDEN---KKL---IVE----CN-----ALPTLVLMLRSEDASVH 252 (704)
Q Consensus 188 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~---~~~---~~~----~~-----~i~~L~~lL~~~~~~v~ 252 (704)
.-.....++.++..+-+....++..|...+..+...-+.. ... ..+ .+ ..+.+..++.+.+....
T Consensus 170 ~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~ 249 (372)
T PF12231_consen 170 IKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKL 249 (372)
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcch
Confidence 1111225677777777777778877766666554211111 111 111 11 22334455555333333
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc---cCCcchHHHHhcCChHHHHHhhC
Q 005282 253 FEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAA---ADSNSKVHIVQRGAVRPLIEMLQ 329 (704)
Q Consensus 253 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~~~~i~~L~~ll~ 329 (704)
..-+|...-+.-+++.....-.-...+...-..+.++++.++..|..+-..+.. .++......+.. +..++...++
T Consensus 250 a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~l-L~~Pl~~~l~ 328 (372)
T PF12231_consen 250 AMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKL-LCQPLSSQLR 328 (372)
T ss_pred HHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHH-HHHHHHHHhC
Confidence 333333222222222111111112344455556678888888887776555432 122211111111 2344444444
Q ss_pred C-CCH----HHHHHHHHHHHHhh
Q 005282 330 S-PDS----QLKEMSAFALGRLA 347 (704)
Q Consensus 330 ~-~~~----~v~~~a~~~L~~l~ 347 (704)
. ... +++..+...++++.
T Consensus 329 ~~~~~~~~~~~~~~ll~~l~~ll 351 (372)
T PF12231_consen 329 REKSSKTKEEVWWYLLYSLCNLL 351 (372)
T ss_pred ccccccccHHHHHHHHHHHhchH
Confidence 2 222 66777777777765
No 295
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=76.40 E-value=13 Score=41.95 Aligned_cols=130 Identities=12% Similarity=0.177 Sum_probs=91.2
Q ss_pred hHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc-CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHh
Q 005282 165 SGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLK-FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLM 243 (704)
Q Consensus 165 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 243 (704)
+.++..+.-.|+++|-...... ...+|.|++-|+ +....+|.+.+-+++.+|... . ......+|.+...
T Consensus 945 ~~vra~~vvTlakmcLah~~La-----Kr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y----T-am~d~YiP~I~~~ 1014 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLA-----KRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY----T-AMTDRYIPMIAAS 1014 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHH-----HHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH----H-HHHHHhhHHHHHH
Confidence 4678888889999996555432 246888988887 455677777777777777521 1 2223468999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcC--CHHHHHHHhcCCChhHHHHHHHHHHHHhccCCc
Q 005282 244 LRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAG--ALQPVIGLLSSSCSESKREAALLLGQFAAADSN 310 (704)
Q Consensus 244 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~--~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 310 (704)
|.++++-||+.++-.|.+|.+.. .+...| ++..++.++ +.+++++..|-..++.+....+.
T Consensus 1015 L~Dp~~iVRrqt~ilL~rLLq~~-----~vKw~G~Lf~Rf~l~l~-D~~edIr~~a~f~~~~vL~~~~P 1077 (1529)
T KOG0413|consen 1015 LCDPSVIVRRQTIILLARLLQFG-----IVKWNGELFIRFMLALL-DANEDIRNDAKFYISEVLQSEEP 1077 (1529)
T ss_pred hcCchHHHHHHHHHHHHHHHhhh-----hhhcchhhHHHHHHHHc-ccCHHHHHHHHHHHHHHHhhcCc
Confidence 99999999999999999998542 222334 234444444 56688999998888887754433
No 296
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.36 E-value=36 Score=37.22 Aligned_cols=149 Identities=15% Similarity=0.077 Sum_probs=88.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcc-CCchh----hHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhH
Q 005282 196 PPLVELLKFVDVKVQRAAAGALRTLAF-KNDEN----KKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIK 270 (704)
Q Consensus 196 ~~L~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~----~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 270 (704)
|.|.+-|+-.|..+|.+|+..+.++-= .+|+. ...+++. -...+.++|+++.+.||..|..-++.+....-+..
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~i 255 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK-QFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMI 255 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 455666777899999999999988732 12221 1222221 25678899999999999999888877763211111
Q ss_pred HHHHHcCCHHHHHHHh-cCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 005282 271 KEVILAGALQPVIGLL-SSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQ 348 (704)
Q Consensus 271 ~~~~~~~~l~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 348 (704)
..-+-..++..+..-+ .+...++|......|-.++. ++.... +.+. ++|.+-..|.+....||.++...|..+-.
T Consensus 256 P~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~-np~sh~-~le~-~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 256 PPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILD-NPLSHP-LLEQ-LLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred CHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHc-Cccchh-HHHH-HHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 1111111222222222 34455777777777777764 433322 2222 34556666677788898888888877653
No 297
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=75.91 E-value=91 Score=31.29 Aligned_cols=141 Identities=20% Similarity=0.135 Sum_probs=91.3
Q ss_pred hHHHHHHHHHHHHhhhcChhhhhhhhcc-----------CCcHHHHHHhc------CCCHHHHHHHHHHHHHhccCCchh
Q 005282 165 SGVIRRAADAITNLAHENANIKTRVRVE-----------DGIPPLVELLK------FVDVKVQRAAAGALRTLAFKNDEN 227 (704)
Q Consensus 165 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~-----------~~i~~L~~ll~------~~~~~~~~~a~~~L~~l~~~~~~~ 227 (704)
.++|..|+.++.....++++.+..++.. .....|+..|- +.|+.-...|+.+|..+..++++.
T Consensus 52 f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~~ 131 (312)
T PF04869_consen 52 FDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPEA 131 (312)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHHH
Confidence 3888999999999998888888766542 11223555544 456767778999999999888888
Q ss_pred hHHhHhc--C----------ChHHHHHhhc-----CCCHHHHHHHHHHHHHHhcCChhhHHHHHHcC-CHHHHHHHhc--
Q 005282 228 KKLIVEC--N----------ALPTLVLMLR-----SEDASVHFEAVGVIGNLVHSSPSIKKEVILAG-ALQPVIGLLS-- 287 (704)
Q Consensus 228 ~~~~~~~--~----------~i~~L~~lL~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-~l~~L~~ll~-- 287 (704)
++....- | .++.+..+|. +.++.++..-+..|..-..+++.....+...+ .++.|+....
T Consensus 132 Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~~~ 211 (312)
T PF04869_consen 132 KEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSNQS 211 (312)
T ss_dssp HHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS--
T ss_pred HHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhhcC
Confidence 7776443 1 2555666554 34677777777888777777788777777654 6888888753
Q ss_pred -CCChhHHHHHHHHHHHHh
Q 005282 288 -SSCSESKREAALLLGQFA 305 (704)
Q Consensus 288 -~~~~~~~~~a~~~L~~l~ 305 (704)
+.+.-++..++..|+-+.
T Consensus 212 ~~~~~~VqGL~A~LLGicy 230 (312)
T PF04869_consen 212 SSEDVLVQGLCAFLLGICY 230 (312)
T ss_dssp TCCCHHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHH
Confidence 223445666666666543
No 298
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=75.76 E-value=65 Score=29.55 Aligned_cols=73 Identities=22% Similarity=0.206 Sum_probs=56.3
Q ss_pred CcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHH
Q 005282 194 GIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKK 271 (704)
Q Consensus 194 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 271 (704)
.++.++++..+++..++..|+..+..+....-.+- ...+|.++.+..++++.++..|...+..+.+..+....
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHH
Confidence 35667788889999999999999998875221111 12589999999999999999999999999866555443
No 299
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=75.32 E-value=41 Score=37.37 Aligned_cols=139 Identities=25% Similarity=0.242 Sum_probs=79.7
Q ss_pred hHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-----CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHH
Q 005282 94 VPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-----VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVI 168 (704)
Q Consensus 94 i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-----~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~ 168 (704)
+..+.++++++.. +-++.++..|+-+++.+. ..+.+. ..+-...++.+...|........ .+-+
T Consensus 395 l~~l~~l~~~~~~------~~~~~l~~sa~l~~~~lv~~~c~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~----~~~~ 463 (574)
T smart00638 395 LKALFELAESPEV------QKQPYLRESALLAYGSLVRRYCVNTPSCP-DFVLEELLKYLHELLQQAVSKGD----EEEI 463 (574)
T ss_pred HHHHHHHhcCccc------cccHHHHHHHHHHHHHHHHHHhcCCCCCC-hhhHHHHHHHHHHHHHHHHhcCC----chhe
Confidence 4556666665432 113356666666666665 111111 11223356666666655422111 1445
Q ss_pred HHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc---CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc
Q 005282 169 RRAADAITNLAHENANIKTRVRVEDGIPPLVELLK---FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR 245 (704)
Q Consensus 169 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~ 245 (704)
...+.+|+|+... ..++.+..++. ..+..+|..|+++|..++...+.. +-+.++.+..
T Consensus 464 ~~~LkaLGN~g~~-----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~ 524 (574)
T smart00638 464 QLYLKALGNAGHP-----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYL 524 (574)
T ss_pred eeHHHhhhccCCh-----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHc
Confidence 6778888888642 23455666665 335789999999999887433321 2345666665
Q ss_pred --CCCHHHHHHHHHHHHHH
Q 005282 246 --SEDASVHFEAVGVIGNL 262 (704)
Q Consensus 246 --~~~~~v~~~a~~~L~~l 262 (704)
..++++|..|+..|...
T Consensus 525 n~~e~~EvRiaA~~~lm~t 543 (574)
T smart00638 525 NRAEPPEVRMAAVLVLMET 543 (574)
T ss_pred CCCCChHHHHHHHHHHHhc
Confidence 35778898888887654
No 300
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.03 E-value=49 Score=36.30 Aligned_cols=186 Identities=16% Similarity=0.130 Sum_probs=111.3
Q ss_pred HHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc--CChhhH----HHHHHcCCcHHHHHHHhhccCCCCCcchhHHH
Q 005282 95 PALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA--VKPEHQ----QIIVDTGALPHLVSLLKQYKNGGNSRALSGVI 168 (704)
Q Consensus 95 ~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~--~~~~~~----~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~ 168 (704)
|.|-.-|+..+. .||..|+..+.++- .+|+.. +.+++. -...+..+|+++.. .++
T Consensus 177 p~l~R~L~a~Ns----------~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL~d~~p--------~VR 237 (1005)
T KOG1949|consen 177 PILWRGLKARNS----------EVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK-QFEELYSLLEDPYP--------MVR 237 (1005)
T ss_pred HHHHHhhccCch----------hhhhhHHHHHHHhccCCCCCccHHHHHHHHHH-HHHHHHHHhcCCCc--------hHH
Confidence 556667777776 89999999999988 666542 233322 34678888888776 888
Q ss_pred HHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc-CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCC
Q 005282 169 RRAADAITNLAHENANIKTRVRVEDGIPPLVELLK-FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSE 247 (704)
Q Consensus 169 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~ 247 (704)
..|...+..+...--+.-..-.-...+..+..-+. +...++|......|-.+.. +|.....+- .++|.+-..|.+.
T Consensus 238 S~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~-np~sh~~le--~~Lpal~~~l~D~ 314 (1005)
T KOG1949|consen 238 STAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILD-NPLSHPLLE--QLLPALRYSLHDN 314 (1005)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHc-CccchhHHH--HHHHhcchhhhcc
Confidence 88887777766422111000000111222222222 3456888888888888885 555444332 2466777778888
Q ss_pred CHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHh
Q 005282 248 DASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFA 305 (704)
Q Consensus 248 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~ 305 (704)
...||..+...|..+-... ...+..-=-.+.++..|...+..+.+.-+..|.+.+
T Consensus 315 se~VRvA~vd~ll~ik~vr---a~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~ 369 (1005)
T KOG1949|consen 315 SEKVRVAFVDMLLKIKAVR---AAKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSF 369 (1005)
T ss_pred chhHHHHHHHHHHHHHhhh---hhhhhccccHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 9999999999888774221 111222223455666666655555444444444443
No 301
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=73.20 E-value=5.1 Score=38.40 Aligned_cols=84 Identities=17% Similarity=0.324 Sum_probs=59.5
Q ss_pred ccEEEEEcCeEeehhHHHHhhc-CHHHHHhhcCCCC---CCCCCceEc-CCCCHHHHHHHHHHHhcCccccCh-hhHHHH
Q 005282 536 SDVTFVVEGKQFYAHRICLLAS-SDAFRAMFDGGYK---EKNAKDVEI-PNIRWNVFELMMRFIYTGNVDVSV-DIAQDL 609 (704)
Q Consensus 536 ~d~~~~~~~~~~~~hk~iL~~~-s~~f~~~f~~~~~---e~~~~~i~l-~~~~~~~~~~~l~~~Y~~~~~~~~-~~~~~l 609 (704)
.-+...+++..|.+.+.+|.+. -...-.||.+++. .+..++.++ ++++..+|+.+|+|.-+|.+.-++ -.+.+|
T Consensus 96 ~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRCP~~vSvpEL 175 (438)
T KOG3840|consen 96 DKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRCPSSVSVSEL 175 (438)
T ss_pred cceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCceeCCCCCchHHH
Confidence 3466667888888888777643 2234567776543 233446666 469999999999999999877443 468899
Q ss_pred HHHHhhhChH
Q 005282 610 LRAADQYLLE 619 (704)
Q Consensus 610 l~~A~~~~~~ 619 (704)
-+++||+.++
T Consensus 176 rEACDYLlip 185 (438)
T KOG3840|consen 176 REACDYLLVP 185 (438)
T ss_pred HhhcceEEee
Confidence 9999998664
No 302
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=72.89 E-value=1.4e+02 Score=32.09 Aligned_cols=90 Identities=16% Similarity=0.168 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCC------CCHHHHHHHHHHHHHhhcCC--chhhhHHhhC--C
Q 005282 292 ESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQS------PDSQLKEMSAFALGRLAQDT--HNQAGIAQDG--G 361 (704)
Q Consensus 292 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~--~ 361 (704)
+....+-.++.|++..+.. ...+..|..+|.+ .+..+...|...+..+..+. +....+--.- .
T Consensus 230 ~l~~~~w~~m~nL~~S~~g-------~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~v 302 (464)
T PF11864_consen 230 SLCKPSWRTMRNLLKSHLG-------HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSV 302 (464)
T ss_pred ccchhHHHHHHHHHcCccH-------HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHH
Confidence 4445555677777653221 2246777787732 23456667788888777554 2222221222 5
Q ss_pred hHHHHHhhcCCChhHHHHHHHHHHHcc
Q 005282 362 ILPLLKLLDSKNGSLQHNAAFALYGLA 388 (704)
Q Consensus 362 ~~~L~~ll~~~~~~v~~~a~~~L~~l~ 388 (704)
++.+...++.+++.+-..++..+.++-
T Consensus 303 l~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 303 LPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred HHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 566777777777777667777666664
No 303
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.45 E-value=1.5e+02 Score=36.94 Aligned_cols=247 Identities=17% Similarity=0.110 Sum_probs=113.7
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHH-HHHHHHHHhccCCcchHHHH
Q 005282 238 PTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKRE-AALLLGQFAAADSNSKVHIV 316 (704)
Q Consensus 238 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~-a~~~L~~l~~~~~~~~~~~~ 316 (704)
..++..+..+++..+..+..+++.++..-+... .-++..+..+.-+.+..+.+.+. -..+++.+-.........-.
T Consensus 879 ~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~---f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qh 955 (2067)
T KOG1822|consen 879 TLIVNSLINPNPKLRCAAAEALARLAQVVGSAP---FVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQH 955 (2067)
T ss_pred HHHhhhhccCChHHHHHHHHHHHHHHHhccccc---hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchh
Confidence 345556667888888888888888885432211 11233445555555555554333 23344433221111111111
Q ss_pred hcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhh
Q 005282 317 QRGAVRPLIEMLQS-PDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVA 395 (704)
Q Consensus 317 ~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 395 (704)
....+..+..+.++ .++.|+.+++.++.-+......-....-...+..+..++-+..+ .......++...-.......
T Consensus 956 l~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~-~~~ev~q~~~R~~~~~~~~~ 1034 (2067)
T KOG1822|consen 956 LNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPT-SHVEVHQCYNRCFNGDDDED 1034 (2067)
T ss_pred cccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCc-chhhhhhhhccccccchhHH
Confidence 12345666666665 45699999999998877543322222222233334444433211 11111111111111111111
Q ss_pred HHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCccceeeecCC
Q 005282 396 DLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNN 475 (704)
Q Consensus 396 ~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~ 475 (704)
.+...-| +.+. +....... ..+....+-...-++..+++.++.++..++.++....+...-. .-
T Consensus 1035 alittlg-peL~-~N~~~d~t------------~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~--~~ 1098 (2067)
T KOG1822|consen 1035 ALITTLG-PELG-PNGDKDST------------STLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNL--DS 1098 (2067)
T ss_pred HHHHhcc-cccC-CCCcccch------------hHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccH--HH
Confidence 1111111 0000 00000000 0000111122233445567888888889988885433221111 12
Q ss_pred cHHHHHHHHhhcchhhhhhHHHHHHHHhh
Q 005282 476 GLELLLGLLESTSVKQREESSVALYKLAT 504 (704)
Q Consensus 476 ~i~~L~~ll~~~~~~~~~~a~~~L~~L~~ 504 (704)
-|+.|+.++.+++.-.|+.....|.++.+
T Consensus 1099 lV~~L~~~l~s~~~i~r~~~~~clrql~~ 1127 (2067)
T KOG1822|consen 1099 LVLQLCSLLSSSYLILRRASFSCLRQLVQ 1127 (2067)
T ss_pred HHHHHHHHhcchhhhhhhhHHhhhhHHhH
Confidence 36777777777776666666666666544
No 304
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.98 E-value=5.2 Score=39.48 Aligned_cols=64 Identities=19% Similarity=0.120 Sum_probs=56.1
Q ss_pred HHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc--CCCHHHHHHHHHHHHHhccCCchhhHHhHhc
Q 005282 171 AADAITNLAHENANIKTRVRVEDGIPPLVELLK--FVDVKVQRAAAGALRTLAFKNDENKKLIVEC 234 (704)
Q Consensus 171 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 234 (704)
....++++|...+..++.+.+.||++.++.-.. +.+|-+++..+.|+++|..++.++++.+...
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~km 441 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGKM 441 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhcC
Confidence 566899999999999999999999999988766 5689999999999999999888888877543
No 305
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=71.97 E-value=22 Score=30.47 Aligned_cols=72 Identities=13% Similarity=0.138 Sum_probs=58.5
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh-hHHHHHHcCCHHHHHHHhcC---CChhHHHHHHHHHHHHhcc
Q 005282 236 ALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPS-IKKEVILAGALQPVIGLLSS---SCSESKREAALLLGQFAAA 307 (704)
Q Consensus 236 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~l~~L~~ll~~---~~~~~~~~a~~~L~~l~~~ 307 (704)
++..|.+-|+++++.++..|+.+|-.+..+... ....+....++..++.++.. .+..++..+...+...+..
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 467788888999999999999999999987655 55666666888889999865 4678899999988887653
No 306
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=71.84 E-value=1.3e+02 Score=31.22 Aligned_cols=264 Identities=14% Similarity=0.127 Sum_probs=137.4
Q ss_pred CCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCc---HHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhh
Q 005282 111 QIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGAL---PHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKT 187 (704)
Q Consensus 111 ~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l---~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 187 (704)
..|||..+..+|+++|+.+..+++....+-+.-+. ...+..+.++..+ ..+....+|+|..--. ..
T Consensus 55 ~~p~~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~------K~i~~~~l~~ls~Q~f-----~~ 123 (372)
T PF12231_consen 55 GDPFDSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSP------KSICTHYLWCLSDQKF-----SP 123 (372)
T ss_pred CCCcchHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHcCCC-----CC
Confidence 34577899999999999999888877665544333 3333333333221 1666677777665332 22
Q ss_pred hhhccCCcHHHHHHhc-----CCCHHHHHHHHHHHHHhccCCchhhHHhHhcC-ChHHHHHhhcCCCHHHHHHHHHHHHH
Q 005282 188 RVRVEDGIPPLVELLK-----FVDVKVQRAAAGALRTLAFKNDENKKLIVECN-ALPTLVLMLRSEDASVHFEAVGVIGN 261 (704)
Q Consensus 188 ~~~~~~~i~~L~~ll~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-~i~~L~~lL~~~~~~v~~~a~~~L~~ 261 (704)
.+.....+..++..+. -++..+....+.++.++....|. .+....+ .++.++..+-+....++..|..++..
T Consensus 124 ~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~--~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~ 201 (372)
T PF12231_consen 124 KIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQ--QMIKHADIWFPILFPDLLSSAKDIRTKAISLLLE 201 (372)
T ss_pred cccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 2444455555555544 35667888888999999853322 2222233 57777777777777777776666555
Q ss_pred HhcC---ChhhHHHHH---H----cC-----CHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHH
Q 005282 262 LVHS---SPSIKKEVI---L----AG-----ALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIE 326 (704)
Q Consensus 262 l~~~---~~~~~~~~~---~----~~-----~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 326 (704)
+... +......+. + .+ +.+.|..++.+.+......-+|...-+.-+++....--.-+..+...-.
T Consensus 202 ~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~ 281 (372)
T PF12231_consen 202 AKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEK 281 (372)
T ss_pred HHHHhChhHHHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHH
Confidence 4421 111111111 1 11 2233555555533333333344322222222210000011223444444
Q ss_pred hhCCCCHHHHHHHHHHHHHhhcC--C--chhhhHHhhCChHHHHHhhcC-CCh----hHHHHHHHHHHHcc
Q 005282 327 MLQSPDSQLKEMSAFALGRLAQD--T--HNQAGIAQDGGILPLLKLLDS-KNG----SLQHNAAFALYGLA 388 (704)
Q Consensus 327 ll~~~~~~v~~~a~~~L~~l~~~--~--~~~~~~~~~~~~~~L~~ll~~-~~~----~v~~~a~~~L~~l~ 388 (704)
.+.++++.++..|..+-..+... . ....+.... ...++...++. ... +++..+...++++.
T Consensus 282 cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ll 351 (372)
T PF12231_consen 282 CFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLL 351 (372)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchH
Confidence 55678899999888887777641 1 111111111 12233333322 222 66777777777764
No 307
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=70.75 E-value=26 Score=39.72 Aligned_cols=130 Identities=14% Similarity=0.126 Sum_probs=94.2
Q ss_pred CCchHHHHHHHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhc
Q 005282 113 PYEHEVEKECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRV 191 (704)
Q Consensus 113 ~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 191 (704)
.+.+.++..+.-+|+++| .+...... .+|.|++-|...+. ..++.+.+-+++.+|... -+..
T Consensus 942 ~~~~~vra~~vvTlakmcLah~~LaKr-----~~P~lvkeLe~~~~-------~aiRnNiV~am~D~C~~Y-----Tam~ 1004 (1529)
T KOG0413|consen 942 MFSDKVRAVGVVTLAKMCLAHDRLAKR-----LMPMLVKELEYNTA-------HAIRNNIVLAMGDICSSY-----TAMT 1004 (1529)
T ss_pred ccchHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhhhH-------HHHhcceeeeehhhHHHH-----HHHH
Confidence 345688999999999999 66554433 45888888877654 377778888888888522 2344
Q ss_pred cCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCC--hHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 005282 192 EDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNA--LPTLVLMLRSEDASVHFEAVGVIGNLVHS 265 (704)
Q Consensus 192 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~--i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 265 (704)
...+|.+...|.++++-+|+.++-.|.+|.+ ...+.-.|. +..+..+ -+.+++++..|=.+++.+...
T Consensus 1005 d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq-----~~~vKw~G~Lf~Rf~l~l-~D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1005 DRYIPMIAASLCDPSVIVRRQTIILLARLLQ-----FGIVKWNGELFIRFMLAL-LDANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred HHhhHHHHHHhcCchHHHHHHHHHHHHHHHh-----hhhhhcchhhHHHHHHHH-cccCHHHHHHHHHHHHHHHhh
Confidence 5679999999999999999999999999985 122222332 3333333 367899999999999888754
No 308
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=69.99 E-value=44 Score=29.13 Aligned_cols=72 Identities=15% Similarity=0.114 Sum_probs=59.2
Q ss_pred CCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCc-hhhHHhHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHHhc
Q 005282 193 DGIPPLVELLKFVDVKVQRAAAGALRTLAFKND-ENKKLIVECNALPTLVLMLRS-EDASVHFEAVGVIGNLVH 264 (704)
Q Consensus 193 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~ 264 (704)
.++..|.+-+.+.++.++..|+..|-.+..+.. .....+...+++..|.+++.. .++.|+..++..+...+.
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 456778888889999999999999999986443 456667777889999999987 788999999999888764
No 309
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=69.55 E-value=41 Score=26.94 Aligned_cols=68 Identities=18% Similarity=0.104 Sum_probs=52.2
Q ss_pred HcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHH
Q 005282 275 LAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFAL 343 (704)
Q Consensus 275 ~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L 343 (704)
....+..|+..+..+.......+...+..+.. ++.....+.+-|+.+.|.++-..-++..+..+-..+
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 45678888899988888888888889998875 677777788889998877777666776666555444
No 310
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=69.27 E-value=1.3e+02 Score=30.21 Aligned_cols=147 Identities=18% Similarity=0.151 Sum_probs=90.4
Q ss_pred hHHHHHHHHHHHhhc-CChhhHHHHHHc-----------CCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcCh
Q 005282 116 HEVEKECAFALGLLA-VKPEHQQIIVDT-----------GALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENA 183 (704)
Q Consensus 116 ~~v~~~a~~~L~~l~-~~~~~~~~~~~~-----------g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~ 183 (704)
-++|..|+.++.... ++++.+..+++. .....|+..|-+.+.+... ++--...|+.+|.++..+++
T Consensus 52 f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~--dpy~~wfAa~il~hll~dn~ 129 (312)
T PF04869_consen 52 FDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSL--DPYRCWFAAVILMHLLRDNP 129 (312)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS---HHHHHHHHHHHHHHHTT-H
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccC--CHHHHHHHHHHHHHHHhcCH
Confidence 489999999999999 899999887753 1222466666543332222 22445678889999998899
Q ss_pred hhhhhhhcc------CC------cHHHHHHhc-----CCCHHHHHHHHHHHHHhccCCchhhHHhHhc-CChHHHHHhhc
Q 005282 184 NIKTRVRVE------DG------IPPLVELLK-----FVDVKVQRAAAGALRTLAFKNDENKKLIVEC-NALPTLVLMLR 245 (704)
Q Consensus 184 ~~~~~~~~~------~~------i~~L~~ll~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~lL~ 245 (704)
..|+....- .+ ++.+..+|. ..++.++..-+..|..-..+++.....+... ..++.|+....
T Consensus 130 ~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~ 209 (312)
T PF04869_consen 130 EAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSN 209 (312)
T ss_dssp HHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS
T ss_pred HHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhh
Confidence 888765543 11 344555544 3356666666666665555677777777655 47999998754
Q ss_pred ---CCCHHHHHHHHHHHHHHhc
Q 005282 246 ---SEDASVHFEAVGVIGNLVH 264 (704)
Q Consensus 246 ---~~~~~v~~~a~~~L~~l~~ 264 (704)
+.+.-|+-.++..|+-+..
T Consensus 210 ~~~~~~~~VqGL~A~LLGicye 231 (312)
T PF04869_consen 210 QSSSEDVLVQGLCAFLLGICYE 231 (312)
T ss_dssp --TCCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCcchHHHHHHHHHHHHHH
Confidence 3456677777777776654
No 311
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=68.90 E-value=63 Score=27.67 Aligned_cols=73 Identities=19% Similarity=0.151 Sum_probs=58.1
Q ss_pred CCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCch-hhHHhHhcCChHHHHHhhcC---CCHHHHHHHHHHHHHHhcC
Q 005282 193 DGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDE-NKKLIVECNALPTLVLMLRS---EDASVHFEAVGVIGNLVHS 265 (704)
Q Consensus 193 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~lL~~---~~~~v~~~a~~~L~~l~~~ 265 (704)
.++..|.+-++++++.++..|+..|-.+..+... ....+.....+..+++++.. .++.|+..++..+..-+..
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4567788889999999999999999999875544 55666666778888888874 4788999999998877643
No 312
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=68.45 E-value=34 Score=33.90 Aligned_cols=78 Identities=17% Similarity=0.163 Sum_probs=53.3
Q ss_pred ChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcC-ChhhH-HHHHHcCCcHHHHHHHhhccC----CCCCcchhH
Q 005282 93 AVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAV-KPEHQ-QIIVDTGALPHLVSLLKQYKN----GGNSRALSG 166 (704)
Q Consensus 93 ~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~-~~~~~-~~~~~~g~l~~L~~lL~~~~~----~~~~~~~~~ 166 (704)
++|.++.++++... .++.+++.+|..+.. .+... ..+.+.|..+.+-..+...-. ..+......
T Consensus 120 iiP~iL~llDD~~~----------~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~ 189 (282)
T PF10521_consen 120 IIPPILNLLDDYSP----------EIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLE 189 (282)
T ss_pred HHhhHHHHhcCCCH----------HHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHH
Confidence 58999999999865 999999999999993 33322 346777877766666654221 111222347
Q ss_pred HHHHHHHHHHHhhh
Q 005282 167 VIRRAADAITNLAH 180 (704)
Q Consensus 167 ~~~~a~~~L~~l~~ 180 (704)
+...+.-++..++.
T Consensus 190 Ll~~ay~~L~~L~~ 203 (282)
T PF10521_consen 190 LLQAAYPALLSLLK 203 (282)
T ss_pred HHHHHHHHHHHHHH
Confidence 77888888888753
No 313
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=68.33 E-value=24 Score=30.68 Aligned_cols=72 Identities=17% Similarity=0.230 Sum_probs=59.6
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh-hhHHHHHHcCCHHHHHHHhcC-CChhHHHHHHHHHHHHhcc
Q 005282 236 ALPTLVLMLRSEDASVHFEAVGVIGNLVHSSP-SIKKEVILAGALQPVIGLLSS-SCSESKREAALLLGQFAAA 307 (704)
Q Consensus 236 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~ll~~-~~~~~~~~a~~~L~~l~~~ 307 (704)
++..|.+-+.+.++.++..|+.+|-.+..+.. .....+...+++..|..++.. .+..++..++..+...+..
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 46778888889999999999999999997755 456667778899999999987 6788899999888887643
No 314
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=68.24 E-value=25 Score=30.52 Aligned_cols=71 Identities=18% Similarity=0.236 Sum_probs=58.5
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCC-hhhHHHHHHcCCHHHHHHHhc-CCChhHHHHHHHHHHHHhc
Q 005282 236 ALPTLVLMLRSEDASVHFEAVGVIGNLVHSS-PSIKKEVILAGALQPVIGLLS-SSCSESKREAALLLGQFAA 306 (704)
Q Consensus 236 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~ll~-~~~~~~~~~a~~~L~~l~~ 306 (704)
++..|.+-|.++++.++..|+..|-.+..+. ......+...+++..|..++. ..++.++..++..+...+.
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 4677888888999999999999999998774 446677778899999999986 4567788888888888764
No 315
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=67.63 E-value=63 Score=28.04 Aligned_cols=72 Identities=13% Similarity=0.053 Sum_probs=58.9
Q ss_pred CCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC-chhhHHhHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhc
Q 005282 193 DGIPPLVELLKFVDVKVQRAAAGALRTLAFKN-DENKKLIVECNALPTLVLMLR-SEDASVHFEAVGVIGNLVH 264 (704)
Q Consensus 193 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~ 264 (704)
.++..|.+-+.++++.++..|+..|-.+..+. ......+...+++..|.+++. ..++.|+..++..+..-+.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 45777888889999999999999999998743 456666778888999999887 5678899999988877763
No 316
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=66.56 E-value=55 Score=26.21 Aligned_cols=69 Identities=23% Similarity=0.172 Sum_probs=53.6
Q ss_pred hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHH
Q 005282 317 QRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALY 385 (704)
Q Consensus 317 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~ 385 (704)
....+..|+.++..++......+...|..+..++.....+..-|+..-+-++-..-++..+..+-.++.
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il~ 96 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEILD 96 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 346788899999988877889999999999999988888888888877666655566666655554443
No 317
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=66.15 E-value=1.4e+02 Score=29.24 Aligned_cols=212 Identities=10% Similarity=0.065 Sum_probs=119.4
Q ss_pred chHHHHHHHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccC
Q 005282 115 EHEVEKECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVED 193 (704)
Q Consensus 115 d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 193 (704)
|+.+|..|+.+|+.+. .-|... ....-+..|+.++.+.-. ++.....++.++..+..... ..... ...
T Consensus 12 d~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~------D~~~~~~~l~gl~~L~~~~~-~~~~~-~~~ 80 (262)
T PF14500_consen 12 DPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLD------DHACVQPALKGLLALVKMKN-FSPES-AVK 80 (262)
T ss_pred CHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhc------cHhhHHHHHHHHHHHHhCcC-CChhh-HHH
Confidence 3489999999999988 443221 222235566666655333 12555555777777663211 11100 111
Q ss_pred CcHHHHHHhc--CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhhH
Q 005282 194 GIPPLVELLK--FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR-SEDASVHFEAVGVIGNLVHSSPSIK 270 (704)
Q Consensus 194 ~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~ 270 (704)
.+..+.+-.. +-....|..+...+..+..+...... -...+.+..+++.+. ..||.-...+...+..+...-+.
T Consensus 81 i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~-~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~-- 157 (262)
T PF14500_consen 81 ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQ-SMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI-- 157 (262)
T ss_pred HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHH-hchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc--
Confidence 1222222111 22356788888888888753222111 112345677777776 45888888888888877654331
Q ss_pred HHHHHcCCHHHHHHHhc---------CC-Ch-h-HHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHH
Q 005282 271 KEVILAGALQPVIGLLS---------SS-CS-E-SKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEM 338 (704)
Q Consensus 271 ~~~~~~~~l~~L~~ll~---------~~-~~-~-~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~ 338 (704)
....+-+...+. .+ ++ . .+..-..+|.+.....+.. ..-.++.|+.-|.++.+.++..
T Consensus 158 -----~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f-----a~~~~p~LleKL~s~~~~~K~D 227 (262)
T PF14500_consen 158 -----SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF-----APFAFPLLLEKLDSTSPSVKLD 227 (262)
T ss_pred -----chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh-----HHHHHHHHHHHHcCCCcHHHHH
Confidence 233444444432 11 11 1 2445555566554433322 2346899999999999999999
Q ss_pred HHHHHHHhhcCC
Q 005282 339 SAFALGRLAQDT 350 (704)
Q Consensus 339 a~~~L~~l~~~~ 350 (704)
++.+|..++..-
T Consensus 228 ~L~tL~~c~~~y 239 (262)
T PF14500_consen 228 SLQTLKACIENY 239 (262)
T ss_pred HHHHHHHHHHHC
Confidence 999999888643
No 318
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=65.92 E-value=1.9e+02 Score=31.88 Aligned_cols=157 Identities=16% Similarity=0.104 Sum_probs=84.2
Q ss_pred HHHHHHHHHHhhcChhHHHHHHh----CCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcC
Q 005282 68 AKTASHALVEFAKNEEIVSLIVD----NGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTG 143 (704)
Q Consensus 68 ~~~a~~~L~~l~~~~~~~~~l~~----~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g 143 (704)
+.-|+.+|+-+..++..-..+++ ...+..++..+.. ++..+..++++|.|+-.++..++.+...
T Consensus 561 ~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~~-----------~~an~ll~vR~L~N~f~~~~g~~~~~s~- 628 (745)
T KOG0301|consen 561 MFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILNA-----------DPANQLLVVRCLANLFSNPAGRELFMSR- 628 (745)
T ss_pred hhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhccccc-----------chhHHHHHHHHHHHhccCHHHHHHHHHH-
Confidence 44555666655554322222222 3455566666652 3467889999999999888888877654
Q ss_pred CcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc-----CCCHHHHHHHHHHHH
Q 005282 144 ALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLK-----FVDVKVQRAAAGALR 218 (704)
Q Consensus 144 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-----~~~~~~~~~a~~~L~ 218 (704)
...+...+......+. ..++........|++..-- ..-.+.++.+.+...+. .++-+-....+.+|.
T Consensus 629 -~~~i~~~~~~~~s~~~----knl~ia~atlaln~sv~l~---~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~Alg 700 (745)
T KOG0301|consen 629 -LESILDPVIEASSLSN----KNLQIALATLALNYSVLLI---QDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALG 700 (745)
T ss_pred -HHHHhhhhhhhhcccc----hhHHHHHHHHHHHHHHHHH---hcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHH
Confidence 3333333322221111 1444433333334431100 00111455565555554 233445667888999
Q ss_pred HhccCCchhhHHhHhcCChHHHHHhhc
Q 005282 219 TLAFKNDENKKLIVECNALPTLVLMLR 245 (704)
Q Consensus 219 ~l~~~~~~~~~~~~~~~~i~~L~~lL~ 245 (704)
+|+. .+.....+...-.+..+++-++
T Consensus 701 tL~t-~~~~~~~~A~~~~v~sia~~~~ 726 (745)
T KOG0301|consen 701 TLMT-VDASVIQLAKNRSVDSIAKKLK 726 (745)
T ss_pred hhcc-ccHHHHHHHHhcCHHHHHHHHH
Confidence 9986 5555666666556667776665
No 319
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=65.76 E-value=2.3e+02 Score=31.75 Aligned_cols=122 Identities=13% Similarity=0.069 Sum_probs=80.6
Q ss_pred cCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhh--cChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHH
Q 005282 142 TGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAH--ENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRT 219 (704)
Q Consensus 142 ~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~ 219 (704)
.|.++.+...|.....+++..+..--.+.|++.++++.. ..+...+-+.+.-+++.++..++++.--++..||..+..
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 478899999995554444332222344556666666653 222223335556667888888899888999999999999
Q ss_pred hccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q 005282 220 LAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSS 266 (704)
Q Consensus 220 l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 266 (704)
+..+-+++- ......+.....+++.+-.|+..|+.++..+..++
T Consensus 487 ~eeDfkd~~---ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~ 530 (970)
T COG5656 487 IEEDFKDNG---ILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE 530 (970)
T ss_pred HHHhcccch---HHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch
Confidence 865333222 22334566777888888889999999998887653
No 320
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=64.30 E-value=1.1e+02 Score=27.71 Aligned_cols=82 Identities=18% Similarity=0.193 Sum_probs=56.5
Q ss_pred CCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 005282 193 DGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKE 272 (704)
Q Consensus 193 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 272 (704)
..+|.+++=|...+..-+..|...+..+.......+-.-+-...+..+-..|++.++++...++.+|..|+..++..-.+
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~a 117 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEA 117 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 44666666677666666677777777776532333333344556777788888999999999999999997665554444
Q ss_pred HH
Q 005282 273 VI 274 (704)
Q Consensus 273 ~~ 274 (704)
++
T Consensus 118 Lv 119 (183)
T PF10274_consen 118 LV 119 (183)
T ss_pred HH
Confidence 44
No 321
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=64.24 E-value=11 Score=30.32 Aligned_cols=60 Identities=15% Similarity=0.278 Sum_probs=38.6
Q ss_pred HHHHHHHhhhChHhHHHHHHHHHHhhCC------------hhhHHHHHHHHHH--cCCHHHHHHHHHHHHHHHH
Q 005282 607 QDLLRAADQYLLEGLKRLCEYSIAQIIS------------VENIMLMYELSEA--YNATTLKQSCILFILEKFD 666 (704)
Q Consensus 607 ~~ll~~A~~~~~~~l~~~c~~~l~~~~~------------~~~~~~~~~~a~~--~~~~~L~~~~~~~i~~~~~ 666 (704)
.+++..|..|+++.|.+.|.+++..+.. .+....++.--.. .+-..+.+.+.+|+..+..
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~~~ 75 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHNPE 75 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCTHH
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhCHH
Confidence 4678999999999999999999976432 2223333321111 1335688888899876543
No 322
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=63.09 E-value=1.7e+02 Score=34.38 Aligned_cols=136 Identities=17% Similarity=0.189 Sum_probs=91.3
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcc-hHHHHhcCChHH
Q 005282 245 RSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNS-KVHIVQRGAVRP 323 (704)
Q Consensus 245 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~ 323 (704)
++-++.+|..++..|+.-...-| ..+.+...+..+-..|.+.+..||..++.+|..+...++.. .....-...=..
T Consensus 297 RDV~~~IRaiCiqeLgiWi~~yP---~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~R 373 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWIKSYP---EIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDR 373 (1048)
T ss_pred ccCchHHHHHHHHHHHHHHHhcc---HHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 46689999999999988775444 45677778888888999999999999999999998653322 122222344456
Q ss_pred HHHhh-CCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcc
Q 005282 324 LIEML-QSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLA 388 (704)
Q Consensus 324 L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~ 388 (704)
++.+. +.-+..|+......+..+... .++...-+.++..++-+.++.++..|...|..=.
T Consensus 374 IVeMadrd~~~~Vrav~L~~~~~~~~~-----g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~k~ 434 (1048)
T KOG2011|consen 374 IVEMADRDRNVSVRAVGLVLCLLLSSS-----GLLSDKDILIVYSLIYDSNRRVAVAAGEFLYKKL 434 (1048)
T ss_pred HHHHHhhhcchhHHHHHHHHHHHHhcc-----cccChhHHHHHHHHHhccCcchHHHHHHHHHHHh
Confidence 66666 344555655544433333221 1233344567788888889999888888775543
No 323
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=62.46 E-value=4e+02 Score=33.33 Aligned_cols=107 Identities=17% Similarity=0.133 Sum_probs=59.9
Q ss_pred ChHHHHH----hhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcc
Q 005282 236 ALPTLVL----MLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNS 311 (704)
Q Consensus 236 ~i~~L~~----lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 311 (704)
.++.++. ++++.++.++.-+......+....+. ..+..++..|+..+.+++..-...|+.+|..++..++..
T Consensus 432 ~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds----~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~ 507 (1426)
T PF14631_consen 432 YFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDS----YCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSE 507 (1426)
T ss_dssp SHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-H----HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccc----hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHH
Confidence 3444444 45678888888888888887766433 233457778888776666655678888898888644332
Q ss_pred hHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 005282 312 KVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQ 348 (704)
Q Consensus 312 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 348 (704)
.... ...+..++..+.+=+..-.......|+.++.
T Consensus 508 l~~f--a~~l~giLD~l~~Ls~~qiR~lf~il~~La~ 542 (1426)
T PF14631_consen 508 LQPF--ATFLKGILDYLDNLSLQQIRKLFDILCTLAF 542 (1426)
T ss_dssp HHHT--HHHHHGGGGGGGG--HHHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 2111 1233334444443322222334666666663
No 324
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=61.81 E-value=71 Score=31.62 Aligned_cols=70 Identities=13% Similarity=0.183 Sum_probs=47.1
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhH-HHHHHcCCHHHHHHHh----c--------CCChhHHHHHHHHHH
Q 005282 236 ALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIK-KEVILAGALQPVIGLL----S--------SSCSESKREAALLLG 302 (704)
Q Consensus 236 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~~~l~~L~~ll----~--------~~~~~~~~~a~~~L~ 302 (704)
++|.++.++.+.++.++..++.+|..+....+... ..+.+.|..+.+-..+ . .....+...+.-++.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 58999999999999999999999999987544332 2255667655544333 2 223344556666666
Q ss_pred HHh
Q 005282 303 QFA 305 (704)
Q Consensus 303 ~l~ 305 (704)
.++
T Consensus 200 ~L~ 202 (282)
T PF10521_consen 200 SLL 202 (282)
T ss_pred HHH
Confidence 654
No 325
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.80 E-value=2.8e+02 Score=31.46 Aligned_cols=248 Identities=16% Similarity=0.133 Sum_probs=113.4
Q ss_pred HHHHHHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcH
Q 005282 118 VEKECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIP 196 (704)
Q Consensus 118 v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 196 (704)
++.+.|..+.-.+ ..++.-+.+. ...+.....+|.+....+.. +.+...|+..|.+.+. .+.....+...+++.
T Consensus 263 lka~ICEi~~LY~~kYeEef~~fl-~~fv~~~W~LL~~~s~~~ky---D~Lvs~Al~FLt~V~~-r~~y~~~F~~~~vl~ 337 (960)
T KOG1992|consen 263 LKAQICEIFNLYATKYEEEFQPFL-PDFVTATWNLLVSTSPDTKY---DYLVSKALQFLTSVSR-RPHYAELFEGENVLA 337 (960)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhhH-HHHHHHHHHHHHhcCCCccH---HHHHHHHHHHHHHHHh-hhhhHhhhcchHHHH
Confidence 3334444444444 3443333222 12334445555554433322 2555566666666663 333333333333333
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHH-HHHHHHHHHHHhcCChhhHHHHHH
Q 005282 197 PLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASV-HFEAVGVIGNLVHSSPSIKKEVIL 275 (704)
Q Consensus 197 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v-~~~a~~~L~~l~~~~~~~~~~~~~ 275 (704)
.+.+.. ++-|++. .+..+.+.+.+.+.-+-+-|.-.|.+. |+.|+..+..|+...+.....+..
T Consensus 338 ~i~e~V-------------vlpN~~l--R~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~ 402 (960)
T KOG1992|consen 338 QICEKV-------------VLPNLIL--REEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFS 402 (960)
T ss_pred HHHHhh-------------ccccccc--chhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 333322 2223332 222344555566777777777556555 456778888888765433332222
Q ss_pred cCCHHHHH-HHhc--CCChhHHHHHHHHHHHHhccCCcchHHHHhc----CChHHH----HHhhCC----CCHHHHHHHH
Q 005282 276 AGALQPVI-GLLS--SSCSESKREAALLLGQFAAADSNSKVHIVQR----GAVRPL----IEMLQS----PDSQLKEMSA 340 (704)
Q Consensus 276 ~~~l~~L~-~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~----~~i~~L----~~ll~~----~~~~v~~~a~ 340 (704)
. -+..++ +... +.++.-...+......++......+..+... ++...+ ..-|.+ +.+-++..+.
T Consensus 403 ~-~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aI 481 (960)
T KOG1992|consen 403 S-EVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAI 481 (960)
T ss_pred H-HHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhccc
Confidence 2 122222 2222 3344445556665555554322222111111 111111 111222 2233333332
Q ss_pred HHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHccc
Q 005282 341 FALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD 389 (704)
Q Consensus 341 ~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 389 (704)
.-+.-.=.... ...-...++.+++.|+++..-+..+|+.++-.+-.
T Consensus 482 Ky~~~FR~ql~---~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~ 527 (960)
T KOG1992|consen 482 KYIYTFRNQLG---KEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLT 527 (960)
T ss_pred ceeeeecccCC---hHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccc
Confidence 22221111111 11122356788889999899999999999977754
No 326
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=61.53 E-value=1.7e+02 Score=28.65 Aligned_cols=215 Identities=13% Similarity=0.072 Sum_probs=118.3
Q ss_pred hhHHHHHHHHHHHHHhhcC-hhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHH
Q 005282 63 TDRAAAKTASHALVEFAKN-EEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVD 141 (704)
Q Consensus 63 ~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~ 141 (704)
++...+.+|...|..+... |.. .....-+..|++++.+.-. |......++.++..|...+....
T Consensus 11 ed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~--------D~~~~~~~l~gl~~L~~~~~~~~---- 75 (262)
T PF14500_consen 11 EDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLD--------DHACVQPALKGLLALVKMKNFSP---- 75 (262)
T ss_pred CCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhc--------cHhhHHHHHHHHHHHHhCcCCCh----
Confidence 3445677888877776542 211 0122235666666555433 34556566777777773333211
Q ss_pred cCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc-CCCHHHHHHHHHHHHHh
Q 005282 142 TGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLK-FVDVKVQRAAAGALRTL 220 (704)
Q Consensus 142 ~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l 220 (704)
+....+++.+-+..+.+.. ....|..+...+..+.......- .-...+.+..+++.+. ..||.....+...+..+
T Consensus 76 -~~~~~i~~~l~~~~~~q~~--~q~~R~~~~~ll~~l~~~~~~~l-~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i 151 (262)
T PF14500_consen 76 -ESAVKILRSLFQNVDVQSL--PQSTRYAVYQLLDSLLENHREAL-QSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVI 151 (262)
T ss_pred -hhHHHHHHHHHHhCChhhh--hHHHHHHHHHHHHHHHHHhHHHH-HhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 1233333333322211111 12677788888888875432211 1122355777788777 57898888888888877
Q ss_pred ccCCchhhHHhHhcCChHHHHHhhc---------CC-CH--HHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcC
Q 005282 221 AFKNDENKKLIVECNALPTLVLMLR---------SE-DA--SVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSS 288 (704)
Q Consensus 221 ~~~~~~~~~~~~~~~~i~~L~~lL~---------~~-~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~ 288 (704)
...-+ . ....+.+.+.+. .+ ++ -.+..-...|.+....++.. ..-.+|.|++-|.+
T Consensus 152 ~~~~~------~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f-----a~~~~p~LleKL~s 219 (262)
T PF14500_consen 152 LQEFD------I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF-----APFAFPLLLEKLDS 219 (262)
T ss_pred HHhcc------c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh-----HHHHHHHHHHHHcC
Confidence 65333 1 223344444433 11 22 13333444444444343433 23468999999999
Q ss_pred CChhHHHHHHHHHHHHhccC
Q 005282 289 SCSESKREAALLLGQFAAAD 308 (704)
Q Consensus 289 ~~~~~~~~a~~~L~~l~~~~ 308 (704)
....++..++.+|...+...
T Consensus 220 ~~~~~K~D~L~tL~~c~~~y 239 (262)
T PF14500_consen 220 TSPSVKLDSLQTLKACIENY 239 (262)
T ss_pred CCcHHHHHHHHHHHHHHHHC
Confidence 99999999999998877543
No 327
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=60.26 E-value=45 Score=28.84 Aligned_cols=71 Identities=20% Similarity=0.203 Sum_probs=57.0
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCC-hhhHHHHHHcCCHHHHHHHhcC------CChhHHHHHHHHHHHHhc
Q 005282 236 ALPTLVLMLRSEDASVHFEAVGVIGNLVHSS-PSIKKEVILAGALQPVIGLLSS------SCSESKREAALLLGQFAA 306 (704)
Q Consensus 236 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~ll~~------~~~~~~~~a~~~L~~l~~ 306 (704)
++..+.+-|++.++.++..|+.+|-.+..+. +.....+...+++.-+++++.. .+..++..++..+...+.
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4677888889999999999999999998765 4456677778899999999953 457788888888877764
No 328
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=59.08 E-value=1.7e+02 Score=28.14 Aligned_cols=127 Identities=20% Similarity=0.230 Sum_probs=72.5
Q ss_pred ChHHHHhhccCCCcCCCCCCC-CchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHH
Q 005282 93 AVPALVEHLQTPPQLTNAQIP-YEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRA 171 (704)
Q Consensus 93 ~i~~L~~lL~~~~~~~~~~~~-~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a 171 (704)
++|.|+.+|.+.......... -+......|+..|+.+- +.-+++.++++++.+++.....-.+-+-+..
T Consensus 32 i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq~r----------e~~A~~~li~l~~~~~~~~~~l~GD~~tE~l 101 (249)
T PF06685_consen 32 ITPELLKILEDAIERANELLDDEEYNLHFYALYLLAQFR----------EERALPPLIRLFSQDDDFLEDLFGDFITEDL 101 (249)
T ss_pred hhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHHHh----------hhhhHHHHHHHHcCCcchHHHHHcchhHhHH
Confidence 467777666663210000000 01133445666665543 4457899999998765411000000223333
Q ss_pred HHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCC--CHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHh
Q 005282 172 ADAITNLAHENANIKTRVRVEDGIPPLVELLKFV--DVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLM 243 (704)
Q Consensus 172 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 243 (704)
..+++.++ .|-++.|.+++.++ +..+|..|+.+|..++...+..|+.+++. +..++..
T Consensus 102 ~~ilasv~------------~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~--f~~ll~~ 161 (249)
T PF06685_consen 102 PRILASVG------------DGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQY--FRELLNY 161 (249)
T ss_pred HHHHHHHh------------CCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH--HHHHHHH
Confidence 34444444 35567788888865 46889999999999998888888877654 4444443
No 329
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.57 E-value=3.4e+02 Score=32.97 Aligned_cols=93 Identities=16% Similarity=0.232 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc----CC---CHHHHHHHHHHHHHhccCCchhhHHhHhcCChH
Q 005282 166 GVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLK----FV---DVKVQRAAAGALRTLAFKNDENKKLIVECNALP 238 (704)
Q Consensus 166 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~----~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 238 (704)
+++.....++.++.....+ ..-.| -+.+.++++ .+ ...+.+.+-.+|+-++.+.-..-..-.-.+.++
T Consensus 857 evr~~sl~~l~silet~ge----~ll~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lid 931 (1610)
T KOG1848|consen 857 EVRISSLEALVSILETVGE----HLLHG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLID 931 (1610)
T ss_pred eeeHHHHHHHHHHHhccch----hhccc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHH
Confidence 6666666777776632211 11122 344444443 11 345555566666666542211111111223455
Q ss_pred HHHHhhc-CCCHHHHHHHHHHHHHHh
Q 005282 239 TLVLMLR-SEDASVHFEAVGVIGNLV 263 (704)
Q Consensus 239 ~L~~lL~-~~~~~v~~~a~~~L~~l~ 263 (704)
.+..+-+ ..|.++-..|+..+++++
T Consensus 932 tl~~fs~QktdlNISltAi~lfWtvs 957 (1610)
T KOG1848|consen 932 TLLVFSRQKTDLNISLTAIGLFWTVS 957 (1610)
T ss_pred HHHHHHhhhccccccHHHHHHHHHHH
Confidence 5555544 356677777777777776
No 330
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=58.41 E-value=1.5e+02 Score=27.17 Aligned_cols=143 Identities=18% Similarity=0.139 Sum_probs=85.3
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHH
Q 005282 236 ALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHI 315 (704)
Q Consensus 236 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 315 (704)
.++.++++..+++..++..|+..+..+....=. --...+|.++.+..++++.++..|...+..+...++.....-
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLv-----nP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~ 83 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLV-----NPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESR 83 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCC-----ChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 356777888899999999999999888754210 012358999999999999999999999999976555443332
Q ss_pred HhcCChHHHHHhh---CCCCH-HH---HHHHHHHHHHhhcC-CchhhhHHhhCChHHHHHhhcCC--------ChhHHHH
Q 005282 316 VQRGAVRPLIEML---QSPDS-QL---KEMSAFALGRLAQD-THNQAGIAQDGGILPLLKLLDSK--------NGSLQHN 379 (704)
Q Consensus 316 ~~~~~i~~L~~ll---~~~~~-~v---~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~L~~ll~~~--------~~~v~~~ 379 (704)
...| +..-..+- ..+.. .. .......+..+..+ ...+..+ +..+++.+... .+.-...
T Consensus 84 ~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~l~~ 157 (187)
T PF12830_consen 84 YSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSDLDF 157 (187)
T ss_pred HHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchhHHHH
Confidence 2222 22222221 11111 11 34455666666653 3334433 35555555332 2333445
Q ss_pred HHHHHHHccc
Q 005282 380 AAFALYGLAD 389 (704)
Q Consensus 380 a~~~L~~l~~ 389 (704)
...+..||+.
T Consensus 158 ~~Fla~nLA~ 167 (187)
T PF12830_consen 158 LLFLAENLAT 167 (187)
T ss_pred HHHHHHHHhc
Confidence 5556666654
No 331
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=58.00 E-value=48 Score=28.40 Aligned_cols=71 Identities=18% Similarity=0.242 Sum_probs=56.0
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCC-hhhHHHHHHcCCHHHHHHHhcCCCh-h-HHHHHHHHHHHHhc
Q 005282 236 ALPTLVLMLRSEDASVHFEAVGVIGNLVHSS-PSIKKEVILAGALQPVIGLLSSSCS-E-SKREAALLLGQFAA 306 (704)
Q Consensus 236 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~-~-~~~~a~~~L~~l~~ 306 (704)
++..|.+-|.++++.++..|+..|-.+..+. +.....+...+++..|..++..... . ++..++..+...+.
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 3566888888999999999999999998774 4466677788899999999876533 3 78888888877764
No 332
>PRK09169 hypothetical protein; Validated
Probab=56.78 E-value=5.6e+02 Score=33.26 Aligned_cols=102 Identities=18% Similarity=0.256 Sum_probs=48.6
Q ss_pred HHHHHHHHHH-hhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcCCc
Q 005282 68 AKTASHALVE-FAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTGAL 145 (704)
Q Consensus 68 ~~~a~~~L~~-l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l 145 (704)
+..+...|.. ++.++.....+ +...+..++..|..-.. ......++..|..-. .++..+..+- .-.+
T Consensus 181 c~~aa~~lA~~la~~~~l~~al-~~q~va~~lnalSKwp~---------~~~cr~a~~~lA~rL~~~~~l~~~l~-~q~v 249 (2316)
T PRK09169 181 CQTAAEQLADRLASDSRLLQAM-DAQEVANALNALSKWPD---------SPRCRNAAERLAERLADEPGLLQSLR-AQEV 249 (2316)
T ss_pred HHHHHHHHHHHhccCHHHHHhc-chHHHHHHHHHHhcCCC---------cHHHHHHHHHHHHHHhcChHHHHhcC-HHHH
Confidence 3344444433 33345555444 34444444555544332 244555555555555 5555543322 3345
Q ss_pred HHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhh
Q 005282 146 PHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKT 187 (704)
Q Consensus 146 ~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 187 (704)
..+++-|++..+. +....++..|.......+..+.
T Consensus 250 a~~LNAlSKWp~~-------~~c~~aa~~lA~rla~~~~lr~ 284 (2316)
T PRK09169 250 ALLLNALSKWPDD-------EACRQAAEALAARLAREPGLRL 284 (2316)
T ss_pred HHHHHHHhcCCCC-------hHHHHHHHHHHHHHhcChhhhh
Confidence 5666666666542 4444555555554433444433
No 333
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=56.63 E-value=5.3e+02 Score=33.00 Aligned_cols=131 Identities=10% Similarity=0.161 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHhhhcC---hhhhhhhhccCCcHHHHHHhc-CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHH
Q 005282 166 GVIRRAADAITNLAHEN---ANIKTRVRVEDGIPPLVELLK-FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLV 241 (704)
Q Consensus 166 ~~~~~a~~~L~~l~~~~---~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 241 (704)
.+...|+..|..++..- ++....-.+...+.++..++. +.+.++++..+.++.++..... .-+.. |.+.+.
T Consensus 1152 ~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~----~nIkS-GWktIF 1226 (1780)
T PLN03076 1152 SIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV----NNVKS-GWKSMF 1226 (1780)
T ss_pred hHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH----hhhhc-CcHHHH
Confidence 67778888888877422 221222233466777777776 5678999999999999975222 12233 455555
Q ss_pred Hhhc----CCCHHHHHHHHHHHHHHhcCChhhHHHHH------HcCCHHHHHHHhcCC-ChhHHHHHHHHHHHH
Q 005282 242 LMLR----SEDASVHFEAVGVIGNLVHSSPSIKKEVI------LAGALQPVIGLLSSS-CSESKREAALLLGQF 304 (704)
Q Consensus 242 ~lL~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~------~~~~l~~L~~ll~~~-~~~~~~~a~~~L~~l 304 (704)
.++. +.++.+...|..++..+..+.- ..+. -...+..+.++.... +.++-..|+..|+++
T Consensus 1227 ~VLs~aa~d~~e~iV~lAFetl~~I~~d~f---~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~ 1297 (1780)
T PLN03076 1227 MVFTTAAYDDHKNIVLLAFEIIEKIIREYF---PYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFC 1297 (1780)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHHhhh---hhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHH
Confidence 5554 5678888888888887764311 1111 012344444444333 345555666666644
No 334
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=56.09 E-value=1.3e+02 Score=25.91 Aligned_cols=94 Identities=10% Similarity=0.033 Sum_probs=66.8
Q ss_pred cchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC-chhhHHhHhcCChHHH
Q 005282 162 RALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKN-DENKKLIVECNALPTL 240 (704)
Q Consensus 162 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L 240 (704)
.++|......+..+.. .+.. ...++..|.+-+.++++.++..|+..|-.+..+. +.....+...+++..+
T Consensus 16 ~~dw~~ileicD~In~----~~~~-----~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el 86 (139)
T cd03567 16 EEDWEAIQAFCEQINK----EPEG-----PQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNEL 86 (139)
T ss_pred CCCHHHHHHHHHHHHc----CCcc-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHH
Confidence 3456666555555532 1111 1245677888899999999999999999887633 4566777778888899
Q ss_pred HHhhcC------CCHHHHHHHHHHHHHHhc
Q 005282 241 VLMLRS------EDASVHFEAVGVIGNLVH 264 (704)
Q Consensus 241 ~~lL~~------~~~~v~~~a~~~L~~l~~ 264 (704)
++++.. .+..|+..++..+..-+.
T Consensus 87 ~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 87 IKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 999853 567899988888876653
No 335
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=55.33 E-value=1.4e+02 Score=34.29 Aligned_cols=141 Identities=20% Similarity=0.131 Sum_probs=89.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHH-H
Q 005282 197 PLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVI-L 275 (704)
Q Consensus 197 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~ 275 (704)
.+...+.++++.+-...+.++..++. -......- ....++.-..-.+..-..+......+|..++..+++....+. +
T Consensus 445 ~l~~~~~~~~~~la~~lL~~~~~l~~-l~~~~~~~-~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l~~d 522 (727)
T PF12726_consen 445 ALLKSLDSDNPDLAKALLKSLSPLIG-LEKFPPKK-EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKELLSD 522 (727)
T ss_pred HHHHhhcCCChHHHHHHHHHHHHhcc-ccccCCcc-cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHcC
Confidence 34444556777777888888888764 11111000 111222222233333356677888999999988777666666 4
Q ss_pred cCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q 005282 276 AGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQD 349 (704)
Q Consensus 276 ~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 349 (704)
.+....++.++-+++.++...|...|..... .+ |-.+.+-.++++.-........++|..+...
T Consensus 523 ~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d--~~--------~R~e~i~~ll~~~~~~tL~ai~~~l~~~~~~ 586 (727)
T PF12726_consen 523 PDAAQAIWSLLFSPDDDLYQAAQDLLKQAFD--VD--------GRLEAIQALLQSNFSPTLSAINWSLRQLTKL 586 (727)
T ss_pred cchhhHHHhheeCCChHHHHHHHHHHHHHhc--CC--------cHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 6889999999999999999999999998763 22 3345555666555555556666777666644
No 336
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=54.32 E-value=24 Score=33.00 Aligned_cols=95 Identities=17% Similarity=0.133 Sum_probs=58.2
Q ss_pred CcccEEEE-EcCeEeehhHH-HHhhcCHHHHHhhcCCCCCC--CCCceEcCCCCHHHHHHHHHHHhcCccccCh--hhHH
Q 005282 534 TLSDVTFV-VEGKQFYAHRI-CLLASSDAFRAMFDGGYKEK--NAKDVEIPNIRWNVFELMMRFIYTGNVDVSV--DIAQ 607 (704)
Q Consensus 534 ~~~d~~~~-~~~~~~~~hk~-iL~~~s~~f~~~f~~~~~e~--~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~--~~~~ 607 (704)
.+.|++-. +||.-|..-.. ...-.-....+||++...-. ......+ |=+-..|+.+|+|+-+....+++ .+..
T Consensus 6 ~~~~~v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fI-DRDG~lFRyvL~~LRt~~l~lpe~f~e~~ 84 (221)
T KOG2723|consen 6 EYPDVVELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFI-DRDGFLFRYVLDYLRTKALLLPEDFAEVE 84 (221)
T ss_pred ccCCceeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEE-cCCcchHHHHHHHhcccccccchhhhhHH
Confidence 34554444 45544433222 22333455677887632211 1122333 34567999999999996666666 5688
Q ss_pred HHHHHHhhhChHhHHHHHHHHH
Q 005282 608 DLLRAADQYLLEGLKRLCEYSI 629 (704)
Q Consensus 608 ~ll~~A~~~~~~~l~~~c~~~l 629 (704)
.+..-|++|+++.+.....+..
T Consensus 85 ~L~rEA~f~~l~~~~~~l~~~~ 106 (221)
T KOG2723|consen 85 RLVREAEFFQLEAPVTYLLNSG 106 (221)
T ss_pred HHHHHHHHHccccHHHHHhccc
Confidence 9999999999998877665433
No 337
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=54.26 E-value=1.4e+02 Score=35.47 Aligned_cols=239 Identities=14% Similarity=0.112 Sum_probs=126.9
Q ss_pred ChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc--CChhhHHHHHHcCCcHHHHHH-HhhccCCCCCcchhHHHH
Q 005282 93 AVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA--VKPEHQQIIVDTGALPHLVSL-LKQYKNGGNSRALSGVIR 169 (704)
Q Consensus 93 ~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~--~~~~~~~~~~~~g~l~~L~~l-L~~~~~~~~~~~~~~~~~ 169 (704)
.+..|+..+-++.. ++|.-+.-++..+. ...+.-....+.-.+..+.-+ |....+-......-.+++
T Consensus 78 ~~e~L~~~~~~~~w----------e~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre 147 (1549)
T KOG0392|consen 78 FLEELVNDLFEPQW----------EIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVRE 147 (1549)
T ss_pred HHHHHHHHhcCchh----------hhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHH
Confidence 45667777777765 78888888888887 222221222222222222111 111111111111237899
Q ss_pred HHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCH
Q 005282 170 RAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDA 249 (704)
Q Consensus 170 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~ 249 (704)
.++++|..+..+-... .....+..+.+++..++.+++.-.+..+.....-..+.-. ..-..+++.+...|.+.+.
T Consensus 148 ~caq~L~~~l~~~~~s----~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~-~~~~~vl~~~i~~L~ds~d 222 (1549)
T KOG0392|consen 148 ACAQALGAYLKHMDES----LIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLF-QLLNLVLDFVIEGLEDSDD 222 (1549)
T ss_pred HHHHHHHHHHHhhhhH----hhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhcch
Confidence 9999999987532221 1124466677777777777776655555544321111111 1112356777788889999
Q ss_pred HHHHHHHHHHHHHhcCChhhH-HHHHHcCCHHHHHHHhcCCCh-h-HHHHHHHHHHHHhccCCcchHH----HHhcCChH
Q 005282 250 SVHFEAVGVIGNLVHSSPSIK-KEVILAGALQPVIGLLSSSCS-E-SKREAALLLGQFAAADSNSKVH----IVQRGAVR 322 (704)
Q Consensus 250 ~v~~~a~~~L~~l~~~~~~~~-~~~~~~~~l~~L~~ll~~~~~-~-~~~~a~~~L~~l~~~~~~~~~~----~~~~~~i~ 322 (704)
.++..|+..+.-+...-.... +.+ ..++..++..+..-+. . ........+..++... +.... -...|+++
T Consensus 223 dv~~~aa~~l~~~~s~~v~l~~~~i--~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~-evl~l~~~~n~~~~Lvp 299 (1549)
T KOG0392|consen 223 DVRSVAAQFLVPAPSIQVKLMVQKI--AKLVHTLWSFLLELDDLSSSTASIMHLLDELCIEN-EVLDLFEQQNLEVGLVP 299 (1549)
T ss_pred HHHHHHHHHhhhhhHHHHhhhHhHH--HHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhH-HHHHHHHHhhhhhccch
Confidence 999999998887764321110 101 1223333333322111 0 0111122233333322 11111 11248899
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhcC
Q 005282 323 PLIEMLQSPDSQLKEMSAFALGRLAQD 349 (704)
Q Consensus 323 ~L~~ll~~~~~~v~~~a~~~L~~l~~~ 349 (704)
.+...+++.-..++..++..+..+.+.
T Consensus 300 ~~~p~l~~~i~sv~~a~l~~l~~lle~ 326 (1549)
T KOG0392|consen 300 RLWPFLRHTISSVRRAALETLAMLLEA 326 (1549)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999998888999999999998854
No 338
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=53.94 E-value=1e+02 Score=26.32 Aligned_cols=72 Identities=15% Similarity=0.099 Sum_probs=55.9
Q ss_pred CCcHHHHHHhcCCCHHHHHHHHHHHHHhccC-CchhhHHhHhcCChHHHHHhhcCCC--HHHHHHHHHHHHHHhc
Q 005282 193 DGIPPLVELLKFVDVKVQRAAAGALRTLAFK-NDENKKLIVECNALPTLVLMLRSED--ASVHFEAVGVIGNLVH 264 (704)
Q Consensus 193 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~ 264 (704)
.++..|.+-+.++++.++..|+..|-.+..+ .+.....+...+++..|..++.+.. +.|+..++..+..-+.
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 4466788888899999999999999999875 3456666777888999999887542 3488888888877653
No 339
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=53.11 E-value=2.6e+02 Score=29.51 Aligned_cols=217 Identities=12% Similarity=0.064 Sum_probs=109.9
Q ss_pred cchhHHHHHHHHHHHHhhhcChhh-hhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHH
Q 005282 162 RALSGVIRRAADAITNLAHENANI-KTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTL 240 (704)
Q Consensus 162 ~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 240 (704)
++.|.=...+-..|..+....+.. ....+....+..|+.++.++|+.-|......|..+-......|..+.. .+...+
T Consensus 101 e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~ 179 (409)
T PF01603_consen 101 EPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRK-SINNIF 179 (409)
T ss_dssp -TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHH
T ss_pred ccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHH
Confidence 334555556666666665422211 233555677888999999999999999999999987544455554433 345566
Q ss_pred HHhhc-CCCHHHHHHHHHHHHHHhcCCh-hhHHHHHHcCCHHHHHHHhcCCChhH-HHHHHHHHHHHhccCCcchHHHHh
Q 005282 241 VLMLR-SEDASVHFEAVGVIGNLVHSSP-SIKKEVILAGALQPVIGLLSSSCSES-KREAALLLGQFAAADSNSKVHIVQ 317 (704)
Q Consensus 241 ~~lL~-~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~~-~~~a~~~L~~l~~~~~~~~~~~~~ 317 (704)
.+++. .....-....+..++.+..+.. ..+.. ...=....++.+...+.-.. ...-..++..++..++.....+
T Consensus 180 ~~fi~e~~~~~gI~elLeil~sii~gf~~plk~e-h~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~-- 256 (409)
T PF01603_consen 180 YRFIYETERHNGIAELLEILGSIINGFAVPLKEE-HKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPV-- 256 (409)
T ss_dssp HHHHHTTS--STHHHHHHHHHHHHTT--SS--HH-HHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHH--
T ss_pred HHHhcCcccccCHHHHHHHHHHHHhccCCCCcHH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHH--
Confidence 66665 3455566778888888876522 11110 00001123333444433322 3344444444544444433222
Q ss_pred cCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCc-hhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHH
Q 005282 318 RGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTH-NQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALY 385 (704)
Q Consensus 318 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~ 385 (704)
+..+++.--..++.-...-+.-+..+...-+ ..-.-+.......+.+++.+.+..|.+.|+....
T Consensus 257 ---i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~ 322 (409)
T PF01603_consen 257 ---IKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWN 322 (409)
T ss_dssp ---HHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGG
T ss_pred ---HHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHC
Confidence 3334443333343333334444444444322 2222222334455667778888888777766543
No 340
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=52.81 E-value=37 Score=31.74 Aligned_cols=110 Identities=15% Similarity=0.186 Sum_probs=52.9
Q ss_pred hhHHHHHHcCCcHHHHHHHhhccCCC----------CCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc
Q 005282 134 EHQQIIVDTGALPHLVSLLKQYKNGG----------NSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLK 203 (704)
Q Consensus 134 ~~~~~~~~~g~l~~L~~lL~~~~~~~----------~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~ 203 (704)
..+..+.+.|++..++.+|+.+.... ......++...|...|..+|.+++.++..+.+. ++.+...+.
T Consensus 34 ~rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~ 111 (207)
T PF01365_consen 34 ERQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFM 111 (207)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HH
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHH
Confidence 34557888899999999998876543 111124788899999999999888887766653 222222222
Q ss_pred CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcC
Q 005282 204 FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRS 246 (704)
Q Consensus 204 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~ 246 (704)
......-..+..++..+..++++....+.+.. +..++.++..
T Consensus 112 ~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll~~ 153 (207)
T PF01365_consen 112 QLQIGYGLGALDVLTEIFRDNPELCESISEEH-IEKFIELLRK 153 (207)
T ss_dssp CCCH-TTHHHHHHHHHHHTT-----------------------
T ss_pred HhhccCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHHHH
Confidence 21111113456667777777777666665554 7778887765
No 341
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=52.66 E-value=1e+02 Score=33.52 Aligned_cols=172 Identities=17% Similarity=0.117 Sum_probs=100.1
Q ss_pred CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc-----------CCCHHHHHHHHHHHHHHhcCChhhHHH
Q 005282 204 FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR-----------SEDASVHFEAVGVIGNLVHSSPSIKKE 272 (704)
Q Consensus 204 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-----------~~~~~v~~~a~~~L~~l~~~~~~~~~~ 272 (704)
+++.++...|-..|..+... +-+..++..|..+.. ..++.++...+..|+.-... .
T Consensus 248 d~~~~V~~~ae~~LKr~~~~-------~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~A------a 314 (501)
T PF13001_consen 248 DSNSSVSDRAEDLLKRLSVS-------LEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIA------A 314 (501)
T ss_pred CCcchHHHHHHHHHhhcCCC-------CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHH------H
Confidence 55677888888888888752 223345566666554 23567777777766553211 0
Q ss_pred HHHcCCHHHHHHHhcCC--ChhHHHHHHHHH---HHHhccCCcchHHH----HhcCChHHHHH----hhCCCCHHHHHHH
Q 005282 273 VILAGALQPVIGLLSSS--CSESKREAALLL---GQFAAADSNSKVHI----VQRGAVRPLIE----MLQSPDSQLKEMS 339 (704)
Q Consensus 273 ~~~~~~l~~L~~ll~~~--~~~~~~~a~~~L---~~l~~~~~~~~~~~----~~~~~i~~L~~----ll~~~~~~v~~~a 339 (704)
-.....+..+..-+.+. +..++..+...+ .....+........ +..++.+.+-. --.+.+...|..+
T Consensus 315 ~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~a 394 (501)
T PF13001_consen 315 TSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLA 394 (501)
T ss_pred hCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHH
Confidence 01122333444444444 456666666666 44443333332222 23344444410 0123467899999
Q ss_pred HHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHccc
Q 005282 340 AFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD 389 (704)
Q Consensus 340 ~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 389 (704)
..+|+.|+...+... .-+.+.+..|.+-|.+..++++..+-.+|..++.
T Consensus 395 Ye~lG~L~~~~p~l~-~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 395 YETLGLLAKRAPSLF-SKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAP 443 (501)
T ss_pred HHHHHHHHccCcccc-cccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHH
Confidence 999999997654321 1123456677777788889999999999998864
No 342
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.17 E-value=18 Score=35.95 Aligned_cols=64 Identities=11% Similarity=0.048 Sum_probs=54.1
Q ss_pred HHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc--CCCHHHHHHHHHHHHHHhcCChhhHHHHHH
Q 005282 212 AAAGALRTLAFKNDENKKLIVECNALPTLVLMLR--SEDASVHFEAVGVIGNLVHSSPSIKKEVIL 275 (704)
Q Consensus 212 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 275 (704)
+..+.++++|...++++..+.+.||++.++.-.. +.+|-+++...-++.++.+++.++...+..
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 3677899999989999999999999999887554 678999999999999999988776665443
No 343
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=52.17 E-value=37 Score=31.77 Aligned_cols=79 Identities=19% Similarity=0.279 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHh
Q 005282 207 VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLL 286 (704)
Q Consensus 207 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll 286 (704)
..+...+...|..++.++++++..+.+. ++.+...+.......-..+..++..+..+++.....+.+.. +..++.++
T Consensus 75 ~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll 151 (207)
T PF01365_consen 75 KELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQLQIGYGLGALDVLTEIFRDNPELCESISEEH-IEKFIELL 151 (207)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCCCH-TTHHHHHHHHHHHTT---------------------
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHhhccCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHH
Confidence 4677889999999999999999888765 44333333332222234567777888888777666655443 78888877
Q ss_pred cC
Q 005282 287 SS 288 (704)
Q Consensus 287 ~~ 288 (704)
..
T Consensus 152 ~~ 153 (207)
T PF01365_consen 152 RK 153 (207)
T ss_dssp --
T ss_pred HH
Confidence 65
No 344
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=50.58 E-value=1.8e+02 Score=30.66 Aligned_cols=233 Identities=10% Similarity=0.071 Sum_probs=113.2
Q ss_pred HHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhH
Q 005282 88 IVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSG 166 (704)
Q Consensus 88 l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~ 166 (704)
.++...+..|+.++.++++ .-|.....+|.++. ..+..|..+. ......+.+++...... .
T Consensus 129 ~i~~~fi~~Ll~l~~S~D~----------rER~~lk~~l~~iy~k~~~~r~~Ir-~~i~~~~~~fi~e~~~~-------~ 190 (409)
T PF01603_consen 129 YIDQKFIKKLLELFDSPDP----------RERDYLKTILHRIYGKFPNLRSFIR-KSINNIFYRFIYETERH-------N 190 (409)
T ss_dssp TS-HHHHHHHHHTTTSSTH----------HHHHHHHHHHHHHHHH-TTTHHHHH-HHHHHHHHHHHHTTS---------S
T ss_pred HcCHHHHHHHHHHcCCCCH----------HHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHhcCcccc-------c
Confidence 3455668889999999865 88888888888888 5656655544 33445556666544331 3
Q ss_pred HHHHHHHHHHHhhhcCh-hhhhhhhccCCcHHHHHHhcCCCH-HHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhh
Q 005282 167 VIRRAADAITNLAHENA-NIKTRVRVEDGIPPLVELLKFVDV-KVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLML 244 (704)
Q Consensus 167 ~~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~ll~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL 244 (704)
-...++..++.+..+-. +.+. ....-....|+.+.+.+.- .....-..++......++.....+ +..+++.-
T Consensus 191 gI~elLeil~sii~gf~~plk~-eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~-----i~~llk~W 264 (409)
T PF01603_consen 191 GIAELLEILGSIINGFAVPLKE-EHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPV-----IKGLLKHW 264 (409)
T ss_dssp THHHHHHHHHHHHTT--SS--H-HHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHH-----HHHHHHHS
T ss_pred CHHHHHHHHHHHHhccCCCCcH-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhC
Confidence 34556666666654311 1111 1111112233334443321 122333344444443333322222 22233333
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhc---CCh
Q 005282 245 RSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQR---GAV 321 (704)
Q Consensus 245 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~---~~i 321 (704)
-..++.-...-+.-+..+...-+...-.-+...+...+...+.+.+..+.+.|+..+.|- ....++.. .++
T Consensus 265 P~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~------~~~~li~~~~~~i~ 338 (409)
T PF01603_consen 265 PKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNE------YFLSLISQNSRVIL 338 (409)
T ss_dssp -SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSH------HHHHHHHCTHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCH------HHHHHHHhChHHHH
Confidence 344554455555566666543322211122233556667777888888877776543321 11112211 245
Q ss_pred HHHHHhhC-----CCCHHHHHHHHHHHHHhhcCC
Q 005282 322 RPLIEMLQ-----SPDSQLKEMSAFALGRLAQDT 350 (704)
Q Consensus 322 ~~L~~ll~-----~~~~~v~~~a~~~L~~l~~~~ 350 (704)
+.+...+. +-+..++..|..++..+..-+
T Consensus 339 p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d 372 (409)
T PF01603_consen 339 PIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMD 372 (409)
T ss_dssp HHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 55555543 235677877777777766543
No 345
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=50.55 E-value=20 Score=20.63 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhccCCCccceeeecCCcHHHHHHHHh
Q 005282 450 VKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLE 485 (704)
Q Consensus 450 v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~ 485 (704)
|+..|+++|+.+.. ..+++.|++.++
T Consensus 1 VR~~Aa~aLg~igd----------~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGD----------PRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-S----------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC----------HHHHHHHHHHhc
Confidence 57789999999833 456788877764
No 346
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=49.80 E-value=2.1e+02 Score=37.28 Aligned_cols=185 Identities=13% Similarity=0.090 Sum_probs=94.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhc--CChHHHHHh-----hcCCCHHHHHHHHHHHHHHhcCChhhH
Q 005282 198 LVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVEC--NALPTLVLM-----LRSEDASVHFEAVGVIGNLVHSSPSIK 270 (704)
Q Consensus 198 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~L~~l-----L~~~~~~v~~~a~~~L~~l~~~~~~~~ 270 (704)
+-.++...+++++..+..++..+...... ....... ..+..++.. +.++++.++......+. +..-
T Consensus 486 ~~~~~~~~~~e~r~~~~l~~~~ll~~~~~-~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~------~~~~ 558 (2341)
T KOG0891|consen 486 VDSYLEADDSEIRKNAALTCCELLKYDII-CSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN------ERFD 558 (2341)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhh-hhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc------cchh
Confidence 44555677888998887777766542222 1111100 112222222 12556666666555554 1122
Q ss_pred HHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q 005282 271 KEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDT 350 (704)
Q Consensus 271 ~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 350 (704)
......+.+..+...+.+..-..+..+...+++++..++.....-+..-.+..+-.+..++-..+....+.-+..+....
T Consensus 559 ~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~ 638 (2341)
T KOG0891|consen 559 AQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISS 638 (2341)
T ss_pred hhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHH
Confidence 22344455666677777777788888888888888766533222222222333333333333333333333333333322
Q ss_pred chhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHccc
Q 005282 351 HNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD 389 (704)
Q Consensus 351 ~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 389 (704)
.......-...+..++..+.+.++.+...+..++..|+.
T Consensus 639 ~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~ 677 (2341)
T KOG0891|consen 639 PVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCA 677 (2341)
T ss_pred HHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHH
Confidence 222222222333445666677777777788888888764
No 347
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=49.53 E-value=29 Score=28.28 Aligned_cols=31 Identities=32% Similarity=0.507 Sum_probs=28.5
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005282 634 SVENIMLMYELSEAYNATTLKQSCILFILEK 664 (704)
Q Consensus 634 ~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~ 664 (704)
+.+++..++.+|..|+++.|.+.|..++.+|
T Consensus 80 ~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 80 SDENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp -TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 3788999999999999999999999999876
No 348
>PRK09169 hypothetical protein; Validated
Probab=48.77 E-value=7.4e+02 Score=32.29 Aligned_cols=15 Identities=13% Similarity=0.171 Sum_probs=6.4
Q ss_pred CHHHHHHHHHHHHHH
Q 005282 248 DASVHFEAVGVIGNL 262 (704)
Q Consensus 248 ~~~v~~~a~~~L~~l 262 (704)
++.-..+++++|+..
T Consensus 371 npQelANaLnALSKw 385 (2316)
T PRK09169 371 NAQELANALNALSKW 385 (2316)
T ss_pred CHHHHHHHHHHHHcC
Confidence 334444444444443
No 349
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=47.62 E-value=1.9e+02 Score=31.39 Aligned_cols=179 Identities=15% Similarity=0.089 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHh--h-ccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccC
Q 005282 117 EVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLK--Q-YKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVED 193 (704)
Q Consensus 117 ~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~--~-~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 193 (704)
+|...|-..|..+..+ +-+...+..|..+.. . ..........+.++...+..|..-.. ..-....
T Consensus 252 ~V~~~ae~~LKr~~~~------~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~------Aa~~~~~ 319 (501)
T PF13001_consen 252 SVSDRAEDLLKRLSVS------LEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVI------AATSFPN 319 (501)
T ss_pred hHHHHHHHHHhhcCCC------CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHH------HHhCCcc
Confidence 7888888888888833 112334556666655 2 11111111123666666666555321 0011123
Q ss_pred CcHHHHHHhcCC--CHHHHHHHHHHH---HHhccCCchhhHH----hHhcCChHHHHH----hhcCCCHHHHHHHHHHHH
Q 005282 194 GIPPLVELLKFV--DVKVQRAAAGAL---RTLAFKNDENKKL----IVECNALPTLVL----MLRSEDASVHFEAVGVIG 260 (704)
Q Consensus 194 ~i~~L~~ll~~~--~~~~~~~a~~~L---~~l~~~~~~~~~~----~~~~~~i~~L~~----lL~~~~~~v~~~a~~~L~ 260 (704)
.+..+..-+.++ +..++..++..+ .....+.+...-. .+..++.+.+-. --.+.+...|..+-.+|+
T Consensus 320 ~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG 399 (501)
T PF13001_consen 320 ILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLG 399 (501)
T ss_pred HHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHH
Confidence 344444455555 566776676666 4444333322222 223344444410 011346789999999999
Q ss_pred HHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCC
Q 005282 261 NLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADS 309 (704)
Q Consensus 261 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 309 (704)
.|+...+... .-+.+.+..|..-|.++.++++...-.+|..++....
T Consensus 400 ~L~~~~p~l~--~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~ 446 (501)
T PF13001_consen 400 LLAKRAPSLF--SKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFK 446 (501)
T ss_pred HHHccCcccc--cccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHh
Confidence 9998776532 1235677888888888888998888888888875433
No 350
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=47.24 E-value=44 Score=28.93 Aligned_cols=71 Identities=24% Similarity=0.326 Sum_probs=54.8
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCC-hhhHHHHHHcCCHHHHHHHhcCCC-hh---HHHHHHHHHHHHhc
Q 005282 236 ALPTLVLMLRSEDASVHFEAVGVIGNLVHSS-PSIKKEVILAGALQPVIGLLSSSC-SE---SKREAALLLGQFAA 306 (704)
Q Consensus 236 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~ll~~~~-~~---~~~~a~~~L~~l~~ 306 (704)
++..|.+-|.++++.++..|+.+|-.+..+. +.....+....++..|..++.+.. .. ++..+...|...+.
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 3567888888999999999999999998776 455566667778999999886443 33 77888877777654
No 351
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=46.76 E-value=53 Score=28.50 Aligned_cols=28 Identities=36% Similarity=0.399 Sum_probs=20.5
Q ss_pred hHHHHHhhcCCChhHHHHHHHHHHHccc
Q 005282 362 ILPLLKLLDSKNGSLQHNAAFALYGLAD 389 (704)
Q Consensus 362 ~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 389 (704)
+.+|+.+|.+.+.++...|+.+|.+..-
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKNTLL 123 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT--T
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhhHH
Confidence 6889999999999999999999988743
No 352
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=46.62 E-value=3.5e+02 Score=27.99 Aligned_cols=127 Identities=17% Similarity=0.140 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc------CCCHHHHHHHHHHHHHhccCCch------------h
Q 005282 166 GVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLK------FVDVKVQRAAAGALRTLAFKNDE------------N 227 (704)
Q Consensus 166 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~------~~~~~~~~~a~~~L~~l~~~~~~------------~ 227 (704)
.-+..|+..+..++...+..-..+ ....+..++. +.++.-+..|+..+..++..... +
T Consensus 226 TrR~AA~dfl~~L~~~~~~~v~~i----~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~ 301 (370)
T PF08506_consen 226 TRRRAACDFLRSLCKKFEKQVTSI----LMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVD 301 (370)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-
T ss_pred CcHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCccccccccc
Confidence 567788888889985332211111 1122333333 45678888999999999863321 1
Q ss_pred hHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHH
Q 005282 228 KKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLL 301 (704)
Q Consensus 228 ~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L 301 (704)
-..+....++|.|. --.+..|-++..|++.+...-..-+. + .-.++++.++..|.+++.-+...|+.++
T Consensus 302 v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~--~--~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 302 VVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK--E--QLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H--H--HHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH--H--HHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 22233333444443 11145677888999988887543221 1 2235799999999999888888888764
No 353
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=46.62 E-value=25 Score=28.60 Aligned_cols=43 Identities=26% Similarity=0.295 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHH
Q 005282 210 QRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHF 253 (704)
Q Consensus 210 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~ 253 (704)
....+..+..|+. .|+....+++.|+++.|+.+|.+++.++..
T Consensus 63 Ld~~Ik~l~~La~-~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 63 LDEEIKKLSVLAT-APELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHHccC-ChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 4567778888886 889999999999999999999998877644
No 354
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=46.45 E-value=21 Score=37.20 Aligned_cols=67 Identities=22% Similarity=0.237 Sum_probs=49.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHh-HhcCChHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 005282 196 PPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLI-VECNALPTLVLMLRSEDASVHFEAVGVIGNLV 263 (704)
Q Consensus 196 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 263 (704)
..+-.+....+++++..+..++.+++.+. ++|... -....-..+++++..+.+++-+.+..++..+.
T Consensus 331 ~~lk~~~a~~n~~l~~qa~~~v~~~~~~~-~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~ 398 (763)
T KOG4231|consen 331 KALKSLCAHKNPELQRQALLAVGNLAFCL-ENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILG 398 (763)
T ss_pred HHHHHHhcccChHHHHHHHHHHHHheecc-cccccccCChHHHHHHHHHhcccccccchhhhHHHHHhh
Confidence 33444555789999999999999999844 444443 34445667788888888888888888887775
No 355
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=46.44 E-value=3.4e+02 Score=27.69 Aligned_cols=216 Identities=15% Similarity=0.085 Sum_probs=102.8
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHH
Q 005282 118 VEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPP 197 (704)
Q Consensus 118 v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 197 (704)
-|...+.+|..+.. .. ....++..+..++.+..+ +..+...+.+|..-+..- ..-.....+..
T Consensus 3 ~r~~~~~~L~~l~~-~~-----~s~~i~~~l~~~~~KE~n-------E~aL~~~l~al~~~~~~~----~~~~~~~~~~~ 65 (339)
T PF12074_consen 3 QRVLHASMLSSLPS-SS-----LSSKIVQGLSPLLSKESN-------EAALSALLSALFKHLFFL----SSELPKKVVDA 65 (339)
T ss_pred HHHHHHHHHHhCCC-cc-----hHHHHHHHHHHHHHhhcC-------HHHHHHHHHHHHHHHHHh----CcCCCHHHHHH
Confidence 34455666666664 12 223345677777776554 144555555555443211 11122334555
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhccCCchhh-HHhHhcCChHHHHHhhc----CCCHHHH----HHHHHHHHHHhcC-Ch
Q 005282 198 LVELLKFVDVKVQRAAAGALRTLAFKNDENK-KLIVECNALPTLVLMLR----SEDASVH----FEAVGVIGNLVHS-SP 267 (704)
Q Consensus 198 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~i~~L~~lL~----~~~~~v~----~~a~~~L~~l~~~-~~ 267 (704)
+.+-+.+..+.+|+.-+..++.... ...+. ..-.-..+++.|.+.++ ++-+... ..+.-.+. +... .+
T Consensus 66 ~~kGl~~kk~~vR~~w~~~~~~~~~-~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~~~~~~~ 143 (339)
T PF12074_consen 66 FKKGLKDKKPPVRRAWLLCLGEALW-ESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-LSSWKLD 143 (339)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHHh-hccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-hccccch
Confidence 6666666677789888888888774 11111 11112235677777664 2222211 11111111 1110 01
Q ss_pred hhHH-HH----HHcCCHHH-HH--HHhcC-CChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCC--CHHHH
Q 005282 268 SIKK-EV----ILAGALQP-VI--GLLSS-SCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSP--DSQLK 336 (704)
Q Consensus 268 ~~~~-~~----~~~~~l~~-L~--~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~ 336 (704)
.... .. ...+-=+. ++ ++.+. .+.+.....+.++..+..+.......-.....-+.++.++.++ ..++|
T Consensus 144 ~~~~~~~~~~~l~~~~kps~ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR 223 (339)
T PF12074_consen 144 KIDSKNISFWSLALDPKPSFLLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVR 223 (339)
T ss_pred hhhhhhhhhhhhccCCCcchhcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHH
Confidence 0000 00 00000000 00 22222 3344455566666666543332211111233567788888777 88999
Q ss_pred HHHHHHHHHhhcCCch
Q 005282 337 EMSAFALGRLAQDTHN 352 (704)
Q Consensus 337 ~~a~~~L~~l~~~~~~ 352 (704)
..|..++..+......
T Consensus 224 ~~A~~~l~~l~~~~~~ 239 (339)
T PF12074_consen 224 RAALSALKKLYASNPE 239 (339)
T ss_pred HHHHHHHHHHHHhChH
Confidence 9999999988765543
No 356
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=46.38 E-value=2.8e+02 Score=28.18 Aligned_cols=66 Identities=11% Similarity=0.163 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHcC--CcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhh
Q 005282 117 EVEKECAFALGLLAVKPEHQQIIVDTG--ALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKT 187 (704)
Q Consensus 117 ~v~~~a~~~L~~l~~~~~~~~~~~~~g--~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 187 (704)
.+|..|+.++..+...+.....+...+ .+..|+++++....-+ ..++..|+.+|..++........
T Consensus 237 ~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~-----~~i~~~Al~~L~ai~~~~~~~~~ 304 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVP-----MDIQTAALRALEAISHKRPRCSD 304 (329)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHHHhccccHHH
Confidence 577778888877777778888888887 8999999998765322 38999999999999976555444
No 357
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=46.33 E-value=24 Score=28.69 Aligned_cols=39 Identities=26% Similarity=0.325 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCc
Q 005282 68 AKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQ 106 (704)
Q Consensus 68 ~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~ 106 (704)
.-+.++.|..++..|+.=..+++.|+++.|+.+|...+.
T Consensus 63 Ld~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~ 101 (108)
T PF08216_consen 63 LDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENT 101 (108)
T ss_pred HHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCc
Confidence 356778888889999988999999999999999998876
No 358
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=45.41 E-value=3e+02 Score=26.84 Aligned_cols=162 Identities=13% Similarity=0.091 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHhhhc-------ChhhhhhhhccCCcHHHHHHhcCCC----HHHHHHHHHHHHHhccCCchhhHHhHhc
Q 005282 166 GVIRRAADAITNLAHE-------NANIKTRVRVEDGIPPLVELLKFVD----VKVQRAAAGALRTLAFKNDENKKLIVEC 234 (704)
Q Consensus 166 ~~~~~a~~~L~~l~~~-------~~~~~~~~~~~~~i~~L~~ll~~~~----~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 234 (704)
...+.++..|..+... +.+.+-.+.-.+.+|.++.-+.+++ ......++..|..+|... ..
T Consensus 77 ~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~--------~~ 148 (262)
T PF14225_consen 77 STYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQ--------GL 148 (262)
T ss_pred CcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhC--------CC
Confidence 3455667777777632 1112333333345666777777666 134456667777777411 11
Q ss_pred CChHHHHHhhc----CCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCc
Q 005282 235 NALPTLVLMLR----SEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSN 310 (704)
Q Consensus 235 ~~i~~L~~lL~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 310 (704)
..+..++.... .+..+....++..|+.-.. |.. ....+..++.+|.++.+.++..+..+|..+...-+-
T Consensus 149 ~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~--P~~-----~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~ 221 (262)
T PF14225_consen 149 PNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF--PDH-----EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDM 221 (262)
T ss_pred ccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC--chh-----HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccC
Confidence 12333443332 2334555666666655432 111 223567788999988889999999999988754332
Q ss_pred chHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 005282 311 SKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLA 347 (704)
Q Consensus 311 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 347 (704)
.+. ....++.++.++++.+-. ..|...|-+..
T Consensus 222 ~~~--~~~dlispllrlL~t~~~---~eAL~VLd~~v 253 (262)
T PF14225_consen 222 RSP--HGADLISPLLRLLQTDLW---MEALEVLDEIV 253 (262)
T ss_pred CCC--cchHHHHHHHHHhCCccH---HHHHHHHHHHH
Confidence 222 445688999999977644 34455554433
No 359
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=44.89 E-value=43 Score=29.01 Aligned_cols=44 Identities=39% Similarity=0.462 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 005282 294 KREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQ 348 (704)
Q Consensus 294 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 348 (704)
...|+..|+.+..+. -+++|+.+|.+.+..+...|+.+|.+-..
T Consensus 80 ~~~Av~LLGtM~GGY-----------NV~~LI~~L~~~d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 80 PAEAVELLGTMLGGY-----------NVQPLIDLLKSDDEELAEEAAEALKNTLL 123 (154)
T ss_dssp HHHHHHHHTTS-SST-----------THHHHHHGG--G-TTTHHHHHHHHHT--T
T ss_pred HHHHHHHHhhccCCC-----------cHHHHHHHHcCCcHHHHHHHHHHHHhhHH
Confidence 556666666664322 37889999988888888889998887553
No 360
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=44.66 E-value=46 Score=33.69 Aligned_cols=57 Identities=11% Similarity=0.197 Sum_probs=41.3
Q ss_pred CceEcCCCCHHHHHHHHHHHhcCc-cc------------cChhhHHHHHHHHhhhChHhHHHHHHHHHHh
Q 005282 575 KDVEIPNIRWNVFELMMRFIYTGN-VD------------VSVDIAQDLLRAADQYLLEGLKRLCEYSIAQ 631 (704)
Q Consensus 575 ~~i~l~~~~~~~~~~~l~~~Y~~~-~~------------~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~ 631 (704)
+.+.+.++..+.+-.+|.....-. ++ +..+++-.++.+|..|+++.|.+.|..|+-+
T Consensus 106 g~~~l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~mfmDr 175 (620)
T KOG4350|consen 106 GKIDLAGVEEDILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCMMFMDR 175 (620)
T ss_pred cceecccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHHHHHhc
Confidence 467887777777666666543211 11 3456777888999999999999999998855
No 361
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=44.47 E-value=3.4e+02 Score=27.12 Aligned_cols=135 Identities=12% Similarity=0.086 Sum_probs=83.3
Q ss_pred HHHHHhCCChHHHHhhccCCCcCC---C-----------CCCCCchHHHHHHHHHHHhhcCChhhHHHH-----------
Q 005282 85 VSLIVDNGAVPALVEHLQTPPQLT---N-----------AQIPYEHEVEKECAFALGLLAVKPEHQQII----------- 139 (704)
Q Consensus 85 ~~~l~~~g~i~~L~~lL~~~~~~~---~-----------~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~----------- 139 (704)
.+.+.+.|+||.|-++.+.=.... . +.-| +..++.+-++.+.++++...+....
T Consensus 2 q~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp-~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~ 80 (303)
T PF12463_consen 2 QTRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSP-DTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVES 80 (303)
T ss_pred hHHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccch-hHHHHHHHHHHHHHHhccccchhHHHHHhcCccccc
Confidence 356778899999877766533210 0 0011 2358999999999999633322211
Q ss_pred -----------HHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcCh--hhhhhhhccCCcHHHHHHhcCC-
Q 005282 140 -----------VDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENA--NIKTRVRVEDGIPPLVELLKFV- 205 (704)
Q Consensus 140 -----------~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~~i~~L~~ll~~~- 205 (704)
.+.|.+..++..+.....+. ..+-.-+.++-....+.+ .-+..+.+.|.++.++.-+-++
T Consensus 81 ~~~~~~~~~~~~~~gLl~kIi~~l~~e~~~s------~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~ 154 (303)
T PF12463_consen 81 ELNSNKLAECKEKKGLLSKIIHVLKKEPIDS------SYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDG 154 (303)
T ss_pred cccccccccccccccHHHHHHHHHHhCCCch------hHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCc
Confidence 13456667777766544322 344444555555443322 3466788889999998877644
Q ss_pred --CHHHHHHHHHHHHHhccCCch
Q 005282 206 --DVKVQRAAAGALRTLAFKNDE 226 (704)
Q Consensus 206 --~~~~~~~a~~~L~~l~~~~~~ 226 (704)
+..+....-..|+.|...+..
T Consensus 155 ~~~~~v~Q~~FDLLGELiK~n~~ 177 (303)
T PF12463_consen 155 CMSQEVLQSNFDLLGELIKFNRD 177 (303)
T ss_pred cchHHHHHHHHHHHHHHHCCCHH
Confidence 356888888999999876544
No 362
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=43.34 E-value=2.2e+02 Score=24.59 Aligned_cols=72 Identities=18% Similarity=0.168 Sum_probs=55.0
Q ss_pred CCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC-chhhHHhHhcCChHHHHHhhcCC-CHH---HHHHHHHHHHHHhc
Q 005282 193 DGIPPLVELLKFVDVKVQRAAAGALRTLAFKN-DENKKLIVECNALPTLVLMLRSE-DAS---VHFEAVGVIGNLVH 264 (704)
Q Consensus 193 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~-~~~---v~~~a~~~L~~l~~ 264 (704)
.++..|.+-|.++++.++..|+..|-.+..+. +.....+....++..|..++.+. ... |+..++..|..-+.
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 44667888888999999999999999998754 45666666777888888888743 333 88888887776653
No 363
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.08 E-value=5.5e+02 Score=29.23 Aligned_cols=323 Identities=11% Similarity=0.074 Sum_probs=0.0
Q ss_pred HHhhhccCCchhhHHHHHHHHHHHHHhhc---ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHh
Q 005282 52 DILNSKFSSDETDRAAAKTASHALVEFAK---NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGL 128 (704)
Q Consensus 52 ~~l~~~~~~~~~~~~~~~~a~~~L~~l~~---~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~ 128 (704)
..+..+-.+......++++.++.+..-.. ..+.+..+ -..++.+|++.+ |--|+..+++++.-
T Consensus 488 ~llpEl~~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~-----Y~a~lnLL~d~~---------D~vV~Ltt~~tlkl 553 (978)
T KOG1993|consen 488 ALLPELANDHGNSRIIRRRVAWILGQWVSVQQKLELKPLL-----YCAFLNLLQDQN---------DLVVRLTTARTLKL 553 (978)
T ss_pred hhCHHhhhcccchhHHHHHHHHHHhhhhheechHhHHHHH-----HHHHHHhcCccc---------cceeehHHHHHHHH
Q ss_pred hcCChhhHH---HHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc--
Q 005282 129 LAVKPEHQQ---IIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLK-- 203 (704)
Q Consensus 129 l~~~~~~~~---~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-- 203 (704)
..++-++.. .-.-......+.++++..... +.+...+..|+.+.....+.-. -.....++.+-.+.+
T Consensus 554 ~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~-------Dtk~~VL~~ls~lI~r~~e~I~-P~~~~ivq~lp~LWe~s 625 (978)
T KOG1993|consen 554 VVDDWNFSEDSFLPYLENLFVLLFKLLKAVEEC-------DTKTSVLNLLSTLIERVSEHIA-PYASTIVQYLPLLWEES 625 (978)
T ss_pred hhhhccCChhhhhhhHHHHHHHHHHHHHHHhhh-------hhHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHhhh
Q ss_pred CCCHHHHHHHHHHHHHhcc--CCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHH
Q 005282 204 FVDVKVQRAAAGALRTLAF--KNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQP 281 (704)
Q Consensus 204 ~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~ 281 (704)
.+.+-++.+.+.+|.++.. +....-..-.-.-+++.-++.=..+.....+.+...-.....+.+.....+.. .+|.
T Consensus 626 ~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll~--L~p~ 703 (978)
T KOG1993|consen 626 EEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELLL--LFPH 703 (978)
T ss_pred ccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHHH--HHHH
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCC
Q 005282 282 VIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGG 361 (704)
Q Consensus 282 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 361 (704)
++..+... .+...-+...+....--+...-......|+.+.+..++.+-..+-....+.++..+....+.-......+.
T Consensus 704 l~~~iE~s-te~L~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~dvr~egl~avLkiveili~t~~il~~~~~~~~ 782 (978)
T KOG1993|consen 704 LLYIIEQS-TENLPTVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLDDVRNEGLQAVLKIVEILIKTNPILGSLLFSPL 782 (978)
T ss_pred HHHHHHhh-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHhhhcchh
Q ss_pred hHHHHHhh--cCCChhHHHHHHHHHHHcc-cCCchhhHHHh
Q 005282 362 ILPLLKLL--DSKNGSLQHNAAFALYGLA-DNEDNVADLVR 399 (704)
Q Consensus 362 ~~~L~~ll--~~~~~~v~~~a~~~L~~l~-~~~~~~~~l~~ 399 (704)
++.+..-+ +...|.+...-+.+++.++ .+++..-.+++
T Consensus 783 L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~msvlq 823 (978)
T KOG1993|consen 783 LSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFMSVLQ 823 (978)
T ss_pred hHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHHHHHH
No 364
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=42.53 E-value=2.5e+02 Score=25.58 Aligned_cols=73 Identities=23% Similarity=0.163 Sum_probs=49.3
Q ss_pred CcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC
Q 005282 144 ALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFK 223 (704)
Q Consensus 144 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 223 (704)
.+|.+++=|+.... ..+..|...+..+.......+-.-+-...+.+|-..|++.++++...++.+|..|+..
T Consensus 39 ~Lpif~dGL~Et~~--------Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~ 110 (183)
T PF10274_consen 39 YLPIFFDGLRETEH--------PYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTS 110 (183)
T ss_pred HHHHHHhhhhccCc--------cHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 45566666655544 5556666666666643222333344456677788888999999999999999999653
Q ss_pred C
Q 005282 224 N 224 (704)
Q Consensus 224 ~ 224 (704)
.
T Consensus 111 ~ 111 (183)
T PF10274_consen 111 S 111 (183)
T ss_pred h
Confidence 3
No 365
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.49 E-value=2.6e+02 Score=33.81 Aligned_cols=19 Identities=21% Similarity=0.111 Sum_probs=11.3
Q ss_pred CCCHHHHHHHHHHHHHhcc
Q 005282 204 FVDVKVQRAAAGALRTLAF 222 (704)
Q Consensus 204 ~~~~~~~~~a~~~L~~l~~ 222 (704)
.+..+++...+.++.++..
T Consensus 853 ~~~~evr~~sl~~l~sile 871 (1610)
T KOG1848|consen 853 SRGVEVRISSLEALVSILE 871 (1610)
T ss_pred CccceeeHHHHHHHHHHHh
Confidence 3445666666666666653
No 366
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=42.31 E-value=37 Score=35.35 Aligned_cols=45 Identities=13% Similarity=0.386 Sum_probs=37.4
Q ss_pred hCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCChhhhccch
Q 005282 632 IISVENIMLMYELSEAYNATTLKQSCILFILEKFDKMRNKPWFFRLIR 679 (704)
Q Consensus 632 ~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~L~~ 679 (704)
.+..+|++..+..|.+|..+.|.+.|++|+..|... ..+|.+|++
T Consensus 184 ~~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~---~naf~~L~q 228 (521)
T KOG2075|consen 184 KLAADTVITTLYAAKKYLVPALERQCVKFLRKNLMA---DNAFLELFQ 228 (521)
T ss_pred hhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC---hHHHHHHHH
Confidence 467899999999999999999999999999886533 356666665
No 367
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=41.87 E-value=2e+02 Score=33.09 Aligned_cols=185 Identities=15% Similarity=0.193 Sum_probs=93.3
Q ss_pred hHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-C-----Chh-hHHHHHHcCCcHHHHHHHhhc
Q 005282 83 EIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-V-----KPE-HQQIIVDTGALPHLVSLLKQY 155 (704)
Q Consensus 83 ~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~-----~~~-~~~~~~~~g~l~~L~~lL~~~ 155 (704)
.+.+.+-+...++.++.++..... ++++..|...|..++ . .|. ...++...+.+..|+..+-..
T Consensus 181 ~Viq~l~d~~li~kll~ll~ps~~---------~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~~ 251 (838)
T KOG2073|consen 181 DVIQWLNDQELIPKLLELLNPSKD---------PDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLED 251 (838)
T ss_pred HHHHHHhhHHHHHHHHHHhCCccc---------cchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHccC
Confidence 344555567899999999998763 689999999999988 4 333 555666666666666555442
Q ss_pred cCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccC-CcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhc
Q 005282 156 KNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVED-GIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVEC 234 (704)
Q Consensus 156 ~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 234 (704)
.... ......+..+..+.. +. +. ..... ....+.+-....++.++...+.++...-. ...+.+.+.
T Consensus 252 ~~s~------s~lVs~i~vlI~ll~--~~-r~-~~~~~~~~~i~~q~~~~~d~~~~~~~l~~~~p~L~---dF~~lL~~~ 318 (838)
T KOG2073|consen 252 GTSL------SVLVSGIIVLISLLN--PR-RD-TVETNSTTTILSQPPSERDPIVLNELLGAMEPRLG---DFVQLLLEP 318 (838)
T ss_pred Ccch------hhHHHHHHHHHHhcC--cc-cc-cccccceeeeecCCccccCccchHHHHHHHHHHHH---HHHHHhcCC
Confidence 2211 223333333333331 11 00 00000 00111111122344555555554443321 111111111
Q ss_pred C---ChHHHHHhhcCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHHcCCHHHHHHHhcCC
Q 005282 235 N---ALPTLVLMLRSEDASVHFEAVGVIGNLVHS-SPSIKKEVILAGALQPVIGLLSSS 289 (704)
Q Consensus 235 ~---~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~ll~~~ 289 (704)
. .++.=...+..+=...|...+..+..+... +......+...+.+..++.++...
T Consensus 319 ~~~~~l~tt~g~l~pPLG~~Rlki~eliaelL~~~~~~l~~el~~~~~~~r~lD~f~~y 377 (838)
T KOG2073|consen 319 EKLDLLETTYGELEPPLGFERLKIVELIAELLHCSNMTLLNELRAEGIAERLLDLFFEY 377 (838)
T ss_pred ccchhhhhhhhccCCCcchHHHHHHHHHHHHhccCcHHHHhHHhhhhhHHHHHHHHHhc
Confidence 1 122222233333456677788888776644 334455566677777777766543
No 368
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=41.51 E-value=4.6e+02 Score=27.98 Aligned_cols=109 Identities=17% Similarity=0.100 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHhccCCchhh-HHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHh
Q 005282 208 KVQRAAAGALRTLAFKNDENK-KLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLL 286 (704)
Q Consensus 208 ~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll 286 (704)
..|..|..+|+.++..-+... ..+.+ +.|+..|++...--|..++.++..-+...........-..+.+.|..+|
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~~~~~~~~----~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L 177 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPESSLQEIFQ----PLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEIL 177 (441)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHH----HHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHH
Confidence 467788888888875322211 11111 2688889888888888888888887755332111100123456677777
Q ss_pred cCCChhHHHHHHHHHHHHhccCCcchHHHHhcCC
Q 005282 287 SSSCSESKREAALLLGQFAAADSNSKVHIVQRGA 320 (704)
Q Consensus 287 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 320 (704)
..+......+....+..+-.........+.+.|.
T Consensus 178 ~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~ 211 (441)
T PF12054_consen 178 ENPEPPYYDELVPSLKRLRTECQQLLATFRDVGK 211 (441)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 7554444555555555554333344444555555
No 369
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=40.61 E-value=3.5e+02 Score=26.16 Aligned_cols=73 Identities=18% Similarity=0.318 Sum_probs=47.7
Q ss_pred hcCChHHHHHhhcCCCHH--------HHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChh--HHHHHHHHHH
Q 005282 233 ECNALPTLVLMLRSEDAS--------VHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSE--SKREAALLLG 302 (704)
Q Consensus 233 ~~~~i~~L~~lL~~~~~~--------v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~--~~~~a~~~L~ 302 (704)
+....+.++++++.++.- +-.....++..++ .|-++.|..++.+++.. ++..|+.+|.
T Consensus 71 e~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~------------~G~~~~L~~li~~~~~~~yvR~aa~~aL~ 138 (249)
T PF06685_consen 71 EERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVG------------DGDIEPLKELIEDPDADEYVRMAAISALA 138 (249)
T ss_pred hhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHh------------CCCHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 456789999999755431 2222233333333 35577777888776544 5888889999
Q ss_pred HHhccCCcchHHHHh
Q 005282 303 QFAAADSNSKVHIVQ 317 (704)
Q Consensus 303 ~l~~~~~~~~~~~~~ 317 (704)
.++..++..+..+++
T Consensus 139 ~l~~~~~~~Re~vi~ 153 (249)
T PF06685_consen 139 FLVHEGPISREEVIQ 153 (249)
T ss_pred HHHHcCCCCHHHHHH
Confidence 999888877776643
No 370
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=40.56 E-value=7.8e+02 Score=30.24 Aligned_cols=146 Identities=14% Similarity=0.099 Sum_probs=80.4
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHH
Q 005282 235 NALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVH 314 (704)
Q Consensus 235 ~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 314 (704)
+++|.|..-|.+++..+|..|...++.+......... --........+.-+.+.+.++|..++....++...++.....
T Consensus 259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~ 337 (1266)
T KOG1525|consen 259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKA 337 (1266)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhH
Confidence 5788888888899999999999999999866332211 001234445555566778888988888887766544432221
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcc
Q 005282 315 IVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLA 388 (704)
Q Consensus 315 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~ 388 (704)
....+.--..+.|+.++.....++ ..+......-.+... .+..+...+.+....||..|..-|..+-
T Consensus 338 -----~~~~~~l~~~~~D~~~rir~~v~i-~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlY 404 (1266)
T KOG1525|consen 338 -----STILLALRERDLDEDVRVRTQVVI-VACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLY 404 (1266)
T ss_pred -----HHHHHHHHhhcCChhhhheeeEEE-EEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 111111112233443332211111 111111111112222 3344445566778888888888776664
No 371
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=40.08 E-value=4.2e+02 Score=26.98 Aligned_cols=178 Identities=17% Similarity=0.139 Sum_probs=90.8
Q ss_pred ChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcC---ChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHH
Q 005282 93 AVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAV---KPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIR 169 (704)
Q Consensus 93 ~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~---~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~ 169 (704)
++..+..-+++... -+|..-+..++.+.. +.... -.-...++.|.+.++....++...+......
T Consensus 62 ~~~~~~kGl~~kk~----------~vR~~w~~~~~~~~~~~~~~~~~--~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~ 129 (339)
T PF12074_consen 62 VVDAFKKGLKDKKP----------PVRRAWLLCLGEALWESPNSDSL--KFAEPFLPKLLQSLKEASANPLQSAQNGELV 129 (339)
T ss_pred HHHHHHHHhcCCCC----------cHHHHHHHHHHHHHhhccCchHH--HHHHHHHHHHHHHHHHHHhCCCCccccccHH
Confidence 35666777777665 588888888888774 22211 1123467888888876544432211101122
Q ss_pred HHHHHHHHhhh-cChhhhh-----hhhccCCcHHHH---HHhcC-CCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHH
Q 005282 170 RAADAITNLAH-ENANIKT-----RVRVEDGIPPLV---ELLKF-VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPT 239 (704)
Q Consensus 170 ~a~~~L~~l~~-~~~~~~~-----~~~~~~~i~~L~---~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 239 (704)
.+...+. +.. ..+.... +....+-=|.++ ++... .+++-....+.++..+..+.+.....-.....-..
T Consensus 130 ~a~~~l~-~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a 208 (339)
T PF12074_consen 130 GAYVLLA-LSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQA 208 (339)
T ss_pred HHHHHHH-hccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHH
Confidence 2222222 110 0010000 000001001111 23333 45666667777777776433221111112224566
Q ss_pred HHHhhcCC--CHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhc
Q 005282 240 LVLMLRSE--DASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLS 287 (704)
Q Consensus 240 L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~ 287 (704)
++.++-++ ...+|+.|+.++..+...++.. +...++..+...+.
T Consensus 209 ~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~li~~l~~~l~ 254 (339)
T PF12074_consen 209 FIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKSLISGLWKWLS 254 (339)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHHHHHHHH
Confidence 77787777 8999999999999998776653 23334555555554
No 372
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=38.90 E-value=1e+02 Score=31.49 Aligned_cols=138 Identities=12% Similarity=0.037 Sum_probs=79.2
Q ss_pred HHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHh
Q 005282 74 ALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLK 153 (704)
Q Consensus 74 ~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~ 153 (704)
+|.++..++.... .+|.++.++...-.....+ +-......++.+..|..|+...-...-+..+|.++..+-
T Consensus 198 aL~sL~tD~gl~~------LlPyf~~fI~~~v~~n~~~---nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv 268 (343)
T cd08050 198 ALQSLRTDPGLQQ------LLPYFVRFIAEGVTVNLDQ---NLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLV 268 (343)
T ss_pred HHHHhccCCCchh------hhhHHHHHHHHHHHhhhcc---cHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhh
Confidence 4445555555433 3577777776653200000 236777888899999988887665555567888887775
Q ss_pred hccCCCC--CcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCC--HHHHHHHHHHHHHhc
Q 005282 154 QYKNGGN--SRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD--VKVQRAAAGALRTLA 221 (704)
Q Consensus 154 ~~~~~~~--~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~--~~~~~~a~~~L~~l~ 221 (704)
...-... ....|.+|..|+..|..+|..-...-. -....++..+.+.+.++. .....-|+..|..+.
T Consensus 269 ~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~-~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~lG 339 (343)
T cd08050 269 AKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYN-TLQPRITRTLLKALLDPKKPLTTHYGAIVGLSALG 339 (343)
T ss_pred hHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHhC
Confidence 5432222 344689999999999999953221111 122223334444444322 233555666665554
No 373
>PHA03098 kelch-like protein; Provisional
Probab=38.37 E-value=89 Score=34.36 Aligned_cols=85 Identities=9% Similarity=0.057 Sum_probs=56.4
Q ss_pred cChhhHHHHHHHHhhhChHhHHHHHHHHHHhhCC------------hhhHHHHHHHHHHc---CCHHHHHHHHHHHH---
Q 005282 601 VSVDIAQDLLRAADQYLLEGLKRLCEYSIAQIIS------------VENIMLMYELSEAY---NATTLKQSCILFIL--- 662 (704)
Q Consensus 601 ~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~------------~~~~~~~~~~a~~~---~~~~L~~~~~~~i~--- 662 (704)
++.+++.+++.+|..|.++.|.+.|.+++.++.. .+....++. .+.. +...+.+.+++|+.
T Consensus 105 l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l~~~~l~~ll~-~~~L~v~~E~~v~~av~~W~~~~~ 183 (534)
T PHA03098 105 IDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYLSKNELIKILS-DDKLNVSSEDVVLEIIIKWLTSKK 183 (534)
T ss_pred CCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcCCHHHHHHHhc-CCCcCcCCHHHHHHHHHHHHhcCh
Confidence 6789999999999999999999999999876442 121222211 1112 23467888888883
Q ss_pred ----HHHHHhhCChhhhccchhcHHHHH
Q 005282 663 ----EKFDKMRNKPWFFRLIRCVLPEIR 686 (704)
Q Consensus 663 ----~~~~~~~~~~~f~~L~~~~~~~l~ 686 (704)
+++.++...=.|.-++++.+.++.
T Consensus 184 ~~r~~~~~~ll~~vR~~~~~~~~l~~~~ 211 (534)
T PHA03098 184 NNKYKDICLILKVLRITFLSEEGIKKLK 211 (534)
T ss_pred hhhHhHHHHHHhhccccccCHHHHHHHH
Confidence 344566666666666666555554
No 374
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=37.92 E-value=4.3e+02 Score=26.42 Aligned_cols=136 Identities=13% Similarity=0.159 Sum_probs=91.1
Q ss_pred HHHHHHcCCcHHHHHHHhhccCCC---C------------CcchhHHHHHHHHHHHHhhhcChhh---------------
Q 005282 136 QQIIVDTGALPHLVSLLKQYKNGG---N------------SRALSGVIRRAADAITNLAHENANI--------------- 185 (704)
Q Consensus 136 ~~~~~~~g~l~~L~~lL~~~~~~~---~------------~~~~~~~~~~a~~~L~~l~~~~~~~--------------- 185 (704)
+..+.+.|.+|.|-++...-.-.. + .-|+..++.+-+..+.++|......
T Consensus 2 q~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~ 81 (303)
T PF12463_consen 2 QTRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESE 81 (303)
T ss_pred hHHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCcccccc
Confidence 456788899999999887622111 0 0123367888889999998632111
Q ss_pred ------hhhhhccCCcHHHHHHhcC--CCHHHHHHHHHHHHHhccCCch--hhHHhHhcCChHHHHHhhcCC---CHHHH
Q 005282 186 ------KTRVRVEDGIPPLVELLKF--VDVKVQRAAAGALRTLAFKNDE--NKKLIVECNALPTLVLMLRSE---DASVH 252 (704)
Q Consensus 186 ------~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~~i~~L~~lL~~~---~~~v~ 252 (704)
...--..|.+..+++.+.. .+...+.+-+.++-...++.+. .+..+.+.|.++.++.-+-++ +..+.
T Consensus 82 ~~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~ 161 (303)
T PF12463_consen 82 LNSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVL 161 (303)
T ss_pred ccccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHH
Confidence 1112234556666666663 4566788888888888876555 344567899999999877654 34688
Q ss_pred HHHHHHHHHHhcCChhhHH
Q 005282 253 FEAVGVIGNLVHSSPSIKK 271 (704)
Q Consensus 253 ~~a~~~L~~l~~~~~~~~~ 271 (704)
......|+.+...+...-.
T Consensus 162 Q~~FDLLGELiK~n~~~f~ 180 (303)
T PF12463_consen 162 QSNFDLLGELIKFNRDAFQ 180 (303)
T ss_pred HHHHHHHHHHHCCCHHHHH
Confidence 8999999999988765433
No 375
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=37.09 E-value=1.1e+03 Score=31.16 Aligned_cols=199 Identities=19% Similarity=0.144 Sum_probs=108.8
Q ss_pred hhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh
Q 005282 189 VRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPS 268 (704)
Q Consensus 189 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 268 (704)
..+.+.+..+...+..+.-.++..+...++.++..++...-.......+..+-.+-.+.-..+...+..-+..+....+.
T Consensus 561 laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~ 640 (2341)
T KOG0891|consen 561 LAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPV 640 (2341)
T ss_pred hcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHH
Confidence 44455566677777788888899999999999876663222222222222232333333333333333333333222222
Q ss_pred hHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhh
Q 005282 269 IKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQS-PDSQLKEMSAFALGRLA 347 (704)
Q Consensus 269 ~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~ 347 (704)
.....+ ...+..++..+.+.+..+...+..+++.+|...........+ ..++.+.+.+.. +...-+..+.++++++.
T Consensus 641 ~i~~~v-~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~ 718 (2341)
T KOG0891|consen 641 LISPYV-GPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLE 718 (2341)
T ss_pred HHHhhc-CchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhh
Confidence 111111 234466667777777778888888999988644433333333 456666666654 45566778899999998
Q ss_pred cCCch--hhhHHhhCChHHHHHhhcC-CChhHHHHHHHHHHHccc
Q 005282 348 QDTHN--QAGIAQDGGILPLLKLLDS-KNGSLQHNAAFALYGLAD 389 (704)
Q Consensus 348 ~~~~~--~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~~L~~l~~ 389 (704)
+...- ........++..+...+.. ....++..+...+.++..
T Consensus 719 s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~ 763 (2341)
T KOG0891|consen 719 SSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGA 763 (2341)
T ss_pred cccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcc
Confidence 65322 1111222233444444333 344567777777775543
No 376
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=36.49 E-value=2.9e+02 Score=31.35 Aligned_cols=56 Identities=13% Similarity=0.048 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc-CCCHHHHHHHHHHHHHhc
Q 005282 166 GVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLK-FVDVKVQRAAAGALRTLA 221 (704)
Q Consensus 166 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~ 221 (704)
..+..++..|+.+....+..-..+.+...++.|+++|. +.+..+...|+.+|..|.
T Consensus 83 ~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlL 139 (668)
T PF04388_consen 83 SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLL 139 (668)
T ss_pred hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHh
Confidence 77889999999999877887788899999999999998 566777888888888775
No 377
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.93 E-value=6.6e+02 Score=28.03 Aligned_cols=138 Identities=16% Similarity=0.070 Sum_probs=82.6
Q ss_pred hhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHc
Q 005282 63 TDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDT 142 (704)
Q Consensus 63 ~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~ 142 (704)
.++..+.+|-..|..++.+|+.... -.-+|..++. +--+.-|..+|.++.+...--......
T Consensus 18 ~D~~~R~~AE~~L~e~s~speclsk---------Cqlll~~gs~---------pYs~mlAst~L~Klvs~~t~lpl~qrl 79 (1082)
T KOG1410|consen 18 TDPTARHRAEKALAELSESPECLSK---------CQLLLERGSY---------PYSQMLASTCLMKLVSRKTPLPLEQRL 79 (1082)
T ss_pred CCHHHHHHHHHHHHHHccCHHHHHH---------HHHHHHcCCC---------chHHHHHHHHHHHHHcCCCCCcHHHHH
Confidence 4455678888899999988876333 2333444443 356777888888888322211111122
Q ss_pred CCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhc--ChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHh
Q 005282 143 GALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHE--NANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTL 220 (704)
Q Consensus 143 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l 220 (704)
+.-..+++.+....+... +-+....+..++.+... -+..+....-.+.+.-+.++++.++.+--..++..|..|
T Consensus 80 dir~Yilnylat~~Pk~~----~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqL 155 (1082)
T KOG1410|consen 80 DIRNYILNYLATGAPKLA----PFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQL 155 (1082)
T ss_pred HHHHHHHHHHhcCCCCcc----cHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHH
Confidence 333566777766433221 15555566666666631 122234445557788889999988877777788888877
Q ss_pred cc
Q 005282 221 AF 222 (704)
Q Consensus 221 ~~ 222 (704)
..
T Consensus 156 vq 157 (1082)
T KOG1410|consen 156 VQ 157 (1082)
T ss_pred HH
Confidence 64
No 378
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=35.78 E-value=4.8e+02 Score=26.37 Aligned_cols=187 Identities=13% Similarity=0.128 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHH-HHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCc
Q 005282 117 EVEKECAFALGLLAVKPEHQQIIVDTGALPHLVS-LLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGI 195 (704)
Q Consensus 117 ~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~-lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i 195 (704)
.++...+..+.......+.... +....+|+++. .|.+...+.+...++++.......+.++-..-.+.-..+. ..++
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~~~-v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~-~~vf 119 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDPEE-VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQIL-EAVF 119 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-HHH-HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHH-HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHH-HHHH
Confidence 3556666666666622222222 34567788777 5555443333333457766666666666542222222222 3444
Q ss_pred HHHHHHhcC---CCHHHHHHHHHHHHHhccCCchhhHHhHh---cCChHHHHHhhcCCCHHHHHHHHHHHHHHhcC----
Q 005282 196 PPLVELLKF---VDVKVQRAAAGALRTLAFKNDENKKLIVE---CNALPTLVLMLRSEDASVHFEAVGVIGNLVHS---- 265 (704)
Q Consensus 196 ~~L~~ll~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~---~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~---- 265 (704)
.+.+.++.. ..|+.+..--..|..+.......-..+-. ..++..++..+++++.++...++.++..+...
T Consensus 120 ~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~ 199 (319)
T PF08767_consen 120 ECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKT 199 (319)
T ss_dssp HHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhc
Confidence 555666653 45888888777777776532221111100 12356677788899999999999998887743
Q ss_pred ChhhHHHHHHcCC---HHHHHHHhcCCCh-hHHHHHHHHHHHHh
Q 005282 266 SPSIKKEVILAGA---LQPVIGLLSSSCS-ESKREAALLLGQFA 305 (704)
Q Consensus 266 ~~~~~~~~~~~~~---l~~L~~ll~~~~~-~~~~~a~~~L~~l~ 305 (704)
+++....+.+.-. +..+..++.++.. ..-..-+.+|.++.
T Consensus 200 ~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf 243 (319)
T PF08767_consen 200 NPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLF 243 (319)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHH
Confidence 2333444444333 3344444444432 23334444554443
No 379
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=35.62 E-value=1.1e+03 Score=30.46 Aligned_cols=132 Identities=8% Similarity=0.058 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHhhc-CC---hhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhcc
Q 005282 117 EVEKECAFALGLLA-VK---PEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVE 192 (704)
Q Consensus 117 ~v~~~a~~~L~~l~-~~---~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 192 (704)
.+...|+..|..++ .. ++....=.+...+.++..++.+... .++++..+.++.++...... -++
T Consensus 1152 ~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~-------~eVrE~ILeCv~qmI~s~~~----nIk- 1219 (1780)
T PLN03076 1152 SIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNA-------VEIRELIIRCVSQMVLSRVN----NVK- 1219 (1780)
T ss_pred hHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCc-------hHHHHHHHHHHHHHHHHHHh----hhh-
Confidence 68888888888888 22 2211112234566788887875543 38999999999998753221 222
Q ss_pred CCcHHHHHHhc----CCCHHHHHHHHHHHHHhccCCchh-----hHHhHhcCChHHHHHhhcCC-CHHHHHHHHHHHHHH
Q 005282 193 DGIPPLVELLK----FVDVKVQRAAAGALRTLAFKNDEN-----KKLIVECNALPTLVLMLRSE-DASVHFEAVGVIGNL 262 (704)
Q Consensus 193 ~~i~~L~~ll~----~~~~~~~~~a~~~L~~l~~~~~~~-----~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l 262 (704)
.|.+.++.++. ..++.+...|-.++..+..+.-.. ...+. ..+..+..+.... +.++-..|+..|+++
T Consensus 1220 SGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~--DlV~cL~~Fa~q~~~~nISL~AI~lL~~~ 1297 (1780)
T PLN03076 1220 SGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFT--DCVNCLIAFTNSRFNKDISLNAIAFLRFC 1297 (1780)
T ss_pred cCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHH--HHHHHHHHHHhCcCcccccHHHHHHHHHH
Confidence 25666666665 556788888888887776421110 11121 1244555555433 456666777777755
No 380
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=33.53 E-value=2.9e+02 Score=23.23 Aligned_cols=73 Identities=12% Similarity=0.135 Sum_probs=46.1
Q ss_pred hHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc--CChhhHHHHHHcCCcHHHHHHHhhccCC----CCCcchhHH
Q 005282 94 VPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA--VKPEHQQIIVDTGALPHLVSLLKQYKNG----GNSRALSGV 167 (704)
Q Consensus 94 i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~--~~~~~~~~~~~~g~l~~L~~lL~~~~~~----~~~~~~~~~ 167 (704)
+..|..=|++.+. .|+..++.+|-.++ +++.++..+.+.- ..++-+...... ....+...+
T Consensus 40 ~d~L~kRL~~~~~----------hVK~K~Lrilk~l~~~G~~~f~~~~~~~~---~~Ik~~~~f~g~~Dp~~Gd~~~~~V 106 (122)
T cd03572 40 LEYLLKRLKRSSP----------HVKLKVLKIIKHLCEKGNSDFKRELQRNS---AQIRECANYKGPPDPLKGDSLNEKV 106 (122)
T ss_pred HHHHHHHhcCCCC----------cchHHHHHHHHHHHhhCCHHHHHHHHHhH---HHHHHHHHcCCCCCcccCcchhHHH
Confidence 6788888888665 89999999999999 6777888777653 233334332221 112222356
Q ss_pred HHHHHHHHHHhh
Q 005282 168 IRRAADAITNLA 179 (704)
Q Consensus 168 ~~~a~~~L~~l~ 179 (704)
+..|-.++.-+.
T Consensus 107 R~~A~El~~~if 118 (122)
T cd03572 107 REEAQELIKAIF 118 (122)
T ss_pred HHHHHHHHHHHh
Confidence 666655555554
No 381
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=33.42 E-value=96 Score=26.73 Aligned_cols=71 Identities=23% Similarity=0.333 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhhhccCCchhh--HHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHH
Q 005282 43 LVQDIRAQIDILNSKFSSDETD--RAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEK 120 (704)
Q Consensus 43 ~~~~~~~l~~~l~~~~~~~~~~--~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~ 120 (704)
+....+.+++.+..++...... ......++.++.....--+. ..+.+.+.++.+.++|..+ +++.
T Consensus 76 l~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~-~~i~~~~~l~~~~~~l~~~------------~~~~ 142 (148)
T PF08389_consen 76 LRSNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPI-ELIINSNLLNLIFQLLQSP------------ELRE 142 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-H-HHHHSSSHHHHHHHHTTSC------------CCHH
T ss_pred HHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCH-HHhccHHHHHHHHHHcCCH------------HHHH
Confidence 4455677777777776443332 55678888888887763222 4555778999999999555 4677
Q ss_pred HHHHHH
Q 005282 121 ECAFAL 126 (704)
Q Consensus 121 ~a~~~L 126 (704)
.|+.+|
T Consensus 143 ~A~~cl 148 (148)
T PF08389_consen 143 AAAECL 148 (148)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 887765
No 382
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.01 E-value=2.5e+02 Score=32.44 Aligned_cols=103 Identities=13% Similarity=0.019 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcC-hhHHHHHH--hCCChHHHHhhccCCCcCCCCCCCCchHH
Q 005282 42 DLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKN-EEIVSLIV--DNGAVPALVEHLQTPPQLTNAQIPYEHEV 118 (704)
Q Consensus 42 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~--~~g~i~~L~~lL~~~~~~~~~~~~~d~~v 118 (704)
+-...+..++.....+++ +++..++.+++.+|.....- ....+.+. -....|.+++.+...++ -+
T Consensus 796 ~qv~iv~kIl~r~~~~LS--~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~----------L~ 863 (1014)
T KOG4524|consen 796 DQVKIVLKILGRGIHLLS--HESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDP----------LI 863 (1014)
T ss_pred hHHHHHHHHHHHHHHHhc--chhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCch----------HH
Confidence 444555555665556665 45667899999998876431 11111111 23457888888888865 89
Q ss_pred HHHHHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhcc
Q 005282 119 EKECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYK 156 (704)
Q Consensus 119 ~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~ 156 (704)
...|+.++.+++ ...++...=+-..++|.+-.++.+..
T Consensus 864 v~~a~~~i~~m~~~sgDFv~sR~l~dvlP~l~~~~~~~~ 902 (1014)
T KOG4524|consen 864 VQRAFSCIEQMGKYSGDFVASRFLEDVLPWLKHLCQDSF 902 (1014)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 55555443333567777777766543
No 383
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=31.51 E-value=4.7e+02 Score=26.74 Aligned_cols=109 Identities=13% Similarity=0.083 Sum_probs=60.0
Q ss_pred CHHHHHHHhcCC-------ChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCC----------CCHHHHHHHH
Q 005282 278 ALQPVIGLLSSS-------CSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQS----------PDSQLKEMSA 340 (704)
Q Consensus 278 ~l~~L~~ll~~~-------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~----------~~~~v~~~a~ 340 (704)
.+|.++.++.+. +..........+..+.. ++.......-+.+++.++..+-. ....+|..|+
T Consensus 211 LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~-N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA 289 (343)
T cd08050 211 LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLD-NPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAA 289 (343)
T ss_pred hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhc-CCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHH
Confidence 456666665432 34445555556666654 44444444445578888877621 2357999999
Q ss_pred HHHHHhhcCCchhhhHHhhCChHHHHHhhcCC-Ch-hHHHHHHHHHHHc
Q 005282 341 FALGRLAQDTHNQAGIAQDGGILPLLKLLDSK-NG-SLQHNAAFALYGL 387 (704)
Q Consensus 341 ~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~-~~-~v~~~a~~~L~~l 387 (704)
..|..++..-.....-+.......+.+.+.+. .+ ....-|+..|..+
T Consensus 290 ~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 290 RLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 99999995433222222333334555555433 22 3345555555555
No 384
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=30.35 E-value=56 Score=19.13 Aligned_cols=28 Identities=29% Similarity=0.458 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhccCCCccceeeecCCcHHHHHHHHhh
Q 005282 449 AVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLES 486 (704)
Q Consensus 449 ~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~~ 486 (704)
.++..|+++|+++. ...+++.|++.+.+
T Consensus 2 ~vR~~aa~aLg~~~----------~~~a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLG----------DEEAVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcC----------CHhHHHHHHHHhcC
Confidence 47888999999882 23566777776643
No 385
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=28.90 E-value=3e+02 Score=23.48 Aligned_cols=49 Identities=20% Similarity=0.158 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHH
Q 005282 249 ASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLL 301 (704)
Q Consensus 249 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L 301 (704)
..+...++.++.....- .....+.+.+.++.+..++.++ +.+..|+.+|
T Consensus 100 ~~~~~~~L~~l~s~i~~--~~~~~i~~~~~l~~~~~~l~~~--~~~~~A~~cl 148 (148)
T PF08389_consen 100 EELVKAALKCLKSWISW--IPIELIINSNLLNLIFQLLQSP--ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHTTT--S-HHHHHSSSHHHHHHHHTTSC--CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh--CCHHHhccHHHHHHHHHHcCCH--HHHHHHHHhC
Confidence 66677777777776642 2233444556777777777443 3355555543
No 386
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=27.21 E-value=1.5e+02 Score=22.49 Aligned_cols=35 Identities=9% Similarity=0.213 Sum_probs=29.2
Q ss_pred hCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005282 632 IISVENIMLMYELSEAYNATTLKQSCILFILEKFD 666 (704)
Q Consensus 632 ~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~ 666 (704)
.++.+..+.++..|...+.+.|.+.|..+++....
T Consensus 10 ~~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~ 44 (78)
T PF01466_consen 10 DVDNDELFDLLNAANYLDIKGLLDLCCKYIANMIK 44 (78)
T ss_dssp -S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHT
T ss_pred HcCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhc
Confidence 46778899999999999999999999999988775
No 387
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=26.54 E-value=62 Score=21.12 Aligned_cols=26 Identities=23% Similarity=0.194 Sum_probs=19.6
Q ss_pred cCCcHHHHHHhcCCCHHHHHHHHHHH
Q 005282 192 EDGIPPLVELLKFVDVKVQRAAAGAL 217 (704)
Q Consensus 192 ~~~i~~L~~ll~~~~~~~~~~a~~~L 217 (704)
..+...+...+.++++.+|++|+.++
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 34556677778889999999988653
No 388
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=26.48 E-value=6.8e+02 Score=25.26 Aligned_cols=137 Identities=10% Similarity=0.080 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHH-Hhc---CC-----ChhHHHHHHHHHHHHhccCCcchHHHHhcCC
Q 005282 250 SVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIG-LLS---SS-----CSESKREAALLLGQFAAADSNSKVHIVQRGA 320 (704)
Q Consensus 250 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~-ll~---~~-----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 320 (704)
.+++..+..+.......+... .+....+++++. +|. .. ++++.......+..+-....+....+. ..+
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~~--~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~-~~v 118 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDPE--EVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQIL-EAV 118 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-HH--HHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHhccCCHH--HHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHH-HHH
Confidence 356677777776665543322 245567777776 332 12 344444444444454443344444444 346
Q ss_pred hHHHHHhhCC---CCHHHHHHHHHHHHHhhcCCchhhhHHhh----CChHHHHHhhcCCChhHHHHHHHHHHHccc
Q 005282 321 VRPLIEMLQS---PDSQLKEMSAFALGRLAQDTHNQAGIAQD----GGILPLLKLLDSKNGSLQHNAAFALYGLAD 389 (704)
Q Consensus 321 i~~L~~ll~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~----~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 389 (704)
++..+.++.. .-|+.+..-...|..+....-..-.-... ..+..++--+++.+.++...++.+|..+..
T Consensus 119 f~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~ 194 (319)
T PF08767_consen 119 FECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLN 194 (319)
T ss_dssp HHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 6777777764 45888888888888877653221111111 123444555688999999999999988864
No 389
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=26.43 E-value=4.3e+02 Score=23.51 Aligned_cols=81 Identities=15% Similarity=0.031 Sum_probs=51.1
Q ss_pred HHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHH-hhCCC--CHHHHHHHHHHHHHhhcC
Q 005282 273 VILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIE-MLQSP--DSQLKEMSAFALGRLAQD 349 (704)
Q Consensus 273 ~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~-ll~~~--~~~v~~~a~~~L~~l~~~ 349 (704)
+++..+.+.++..+.+++..+...++.++..+........+.-. .-.+..++. ++.++ +..-|..++.++..++..
T Consensus 69 ~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~el-e~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 69 LLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLEL-EVFLSHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 44566778888888777788888888888888743221111111 113444444 55543 356778899999999987
Q ss_pred Cchhh
Q 005282 350 THNQA 354 (704)
Q Consensus 350 ~~~~~ 354 (704)
+..-.
T Consensus 148 p~~l~ 152 (168)
T PF12783_consen 148 PQFLV 152 (168)
T ss_pred hhHHH
Confidence 75433
No 390
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=25.86 E-value=1.4e+02 Score=24.86 Aligned_cols=38 Identities=13% Similarity=0.168 Sum_probs=31.1
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 005282 236 ALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVI 274 (704)
Q Consensus 236 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 274 (704)
+++.|+.-|.+++++|...|+.+|...+... .....++
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v 46 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLV 46 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHH
Confidence 4788999999999999999999999999774 4444444
No 391
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=25.15 E-value=97 Score=25.72 Aligned_cols=39 Identities=21% Similarity=0.169 Sum_probs=33.3
Q ss_pred ChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHHHh
Q 005282 361 GILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVR 399 (704)
Q Consensus 361 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~ 399 (704)
+++.|++-|.+.+++|...|..+|...+.+++..+.++.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHH
Confidence 567788999999999999999999999987777776665
No 392
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=25.02 E-value=6e+02 Score=24.14 Aligned_cols=78 Identities=13% Similarity=0.106 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCH------------------HHHHHHHHHHHHhhcCCchhhh
Q 005282 294 KREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDS------------------QLKEMSAFALGRLAQDTHNQAG 355 (704)
Q Consensus 294 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~------------------~v~~~a~~~L~~l~~~~~~~~~ 355 (704)
...++..+..+.. .++....+.+.++++.+...|..-++ .+-..-...|+.++.+..+...
T Consensus 81 ~~vGc~L~~~Ll~-~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~Gl~l 159 (226)
T PF14666_consen 81 VRVGCQLLETLLS-SPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNGLKL 159 (226)
T ss_pred HHHHHHHHHHHHc-CcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhHHHH
Confidence 4455556666654 45555556677777777776643211 2233345667777777777766
Q ss_pred HHhhCChHHHHHhhcCC
Q 005282 356 IAQDGGILPLLKLLDSK 372 (704)
Q Consensus 356 ~~~~~~~~~L~~ll~~~ 372 (704)
+-+.+.+..+.++....
T Consensus 160 Le~~~if~~l~~i~~~~ 176 (226)
T PF14666_consen 160 LERWNIFTMLYHIFSLS 176 (226)
T ss_pred HHHCCHHHHHHHHHccC
Confidence 67777777777777654
No 393
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=24.74 E-value=1.3e+02 Score=23.44 Aligned_cols=66 Identities=12% Similarity=0.147 Sum_probs=43.5
Q ss_pred hccCCcHHHHHHhc-CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc----CCCHHHHHHHHHHHH
Q 005282 190 RVEDGIPPLVELLK-FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR----SEDASVHFEAVGVIG 260 (704)
Q Consensus 190 ~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~----~~~~~v~~~a~~~L~ 260 (704)
.+...+.++..++. ..+.++++..+.++.++..... .-+..| .+.+...++ ++++.+...|..++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~----~~i~SG-W~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRG----ENIKSG-WKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhH----HHHHhc-cHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 44566777888765 5688999999999999985221 223444 455555554 456777777776654
No 394
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.50 E-value=2e+02 Score=33.26 Aligned_cols=93 Identities=16% Similarity=0.104 Sum_probs=63.9
Q ss_pred cHHHHHHhcCCCHHHHHHHHHHHHHhcc--CCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 005282 195 IPPLVELLKFVDVKVQRAAAGALRTLAF--KNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKE 272 (704)
Q Consensus 195 i~~L~~ll~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 272 (704)
+..-..+|.+.+..+|..++.++....- ...++.-...-....|.++..+...++-+...|+.++.+++.........
T Consensus 805 l~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~s 884 (1014)
T KOG4524|consen 805 LGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVAS 884 (1014)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3344556778888899988888876421 12233333333456888999999999999999999999998766555444
Q ss_pred HHHcCCHHHHHHHhc
Q 005282 273 VILAGALQPVIGLLS 287 (704)
Q Consensus 273 ~~~~~~l~~L~~ll~ 287 (704)
-.-..++|.+-.++.
T Consensus 885 R~l~dvlP~l~~~~~ 899 (1014)
T KOG4524|consen 885 RFLEDVLPWLKHLCQ 899 (1014)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444566776665554
No 395
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=24.38 E-value=2.9e+02 Score=28.05 Aligned_cols=61 Identities=18% Similarity=0.250 Sum_probs=43.4
Q ss_pred HHHHHHHHhhcChhHHHHHHhCC--ChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHH
Q 005282 70 TASHALVEFAKNEEIVSLIVDNG--AVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQ 137 (704)
Q Consensus 70 ~a~~~L~~l~~~~~~~~~l~~~g--~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~ 137 (704)
-|+..+..+..++.....+...+ ++..|+++++.+.. ...+++..|+.+|..++ ..+...+
T Consensus 241 lAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~-------v~~~i~~~Al~~L~ai~~~~~~~~~ 304 (329)
T PF06012_consen 241 LAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEK-------VPMDIQTAALRALEAISHKRPRCSD 304 (329)
T ss_pred HHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCC-------CCHHHHHHHHHHHHHHHhccccHHH
Confidence 33444444444677777777776 99999999999764 23589999999999999 4443333
No 396
>PHA02790 Kelch-like protein; Provisional
Probab=24.32 E-value=1.4e+02 Score=32.39 Aligned_cols=44 Identities=18% Similarity=0.141 Sum_probs=34.7
Q ss_pred HHHHHHHHhcCccccChhhHHHHHHHHhhhChHhHHHHHHHHHHhhC
Q 005282 587 FELMMRFIYTGNVDVSVDIAQDLLRAADQYLLEGLKRLCEYSIAQII 633 (704)
Q Consensus 587 ~~~~l~~~Y~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~ 633 (704)
...+.+|+-. .++++|..+++.+|+.|++++|.+.+.+|+.+++
T Consensus 109 ~~~C~~fL~~---~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF 152 (480)
T PHA02790 109 IYTCINFILR---DFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHF 152 (480)
T ss_pred HHHHHHHHHh---hCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhH
Confidence 3344455432 4788999999999999999999999998887644
No 397
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=23.83 E-value=1.7e+02 Score=26.16 Aligned_cols=84 Identities=17% Similarity=0.117 Sum_probs=53.6
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHH-hhcCCC--hhHHHHHHHHHHHcccCC
Q 005282 315 IVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLK-LLDSKN--GSLQHNAAFALYGLADNE 391 (704)
Q Consensus 315 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~-ll~~~~--~~v~~~a~~~L~~l~~~~ 391 (704)
+++..+.+.+.+.+.++++.+-..++..+..+...-...-+.--.-.+..++. ++.+++ ...|..++.++..++.+|
T Consensus 69 ~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p 148 (168)
T PF12783_consen 69 LLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCKDP 148 (168)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhCh
Confidence 44556777788887777788888889998888844221111111122334443 565544 467788999999999888
Q ss_pred chhhHHH
Q 005282 392 DNVADLV 398 (704)
Q Consensus 392 ~~~~~l~ 398 (704)
.....+.
T Consensus 149 ~~l~~lf 155 (168)
T PF12783_consen 149 QFLVDLF 155 (168)
T ss_pred hHHHHHH
Confidence 7655443
No 398
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=23.61 E-value=6.5e+02 Score=27.30 Aligned_cols=144 Identities=11% Similarity=0.022 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCc
Q 005282 66 AAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGAL 145 (704)
Q Consensus 66 ~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l 145 (704)
..+.+|+..|. .++..... +|.++.++...-..... .-+-+.....+..+..|.+||.+.-.-.=+..+
T Consensus 222 ~~r~eAL~sL~---TDsGL~~L------lPyFv~fIae~vs~ni~--~~nL~lL~~lm~m~rSLl~Np~i~lepYlh~L~ 290 (576)
T KOG2549|consen 222 PLRQEALQSLE---TDSGLQQL------LPYFVTFIAEGVSVNIV--QNNLELLIYLMRMVRSLLDNPNIFLEPYLHQLV 290 (576)
T ss_pred HHHHHHHHhhc---cCccHHHH------HHHHHHHHhhheeeccc--cccHHHHHHHHHHHHHHhcCCccchhhHHHHHh
Confidence 34555555544 34444222 57777777665431100 113467788889999999999887666666778
Q ss_pred HHHHHHHhhcc--CCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCC--CHHHHHHHHHHHHHhc
Q 005282 146 PHLVSLLKQYK--NGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFV--DVKVQRAAAGALRTLA 221 (704)
Q Consensus 146 ~~L~~lL~~~~--~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~~l~ 221 (704)
|.++..+-+.. ..+..+..|.++..|+..+..+|......... ....++..+.+.+.+. ......-++..|..+.
T Consensus 291 PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg 369 (576)
T KOG2549|consen 291 PSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPLSTHYGAIAGLSELG 369 (576)
T ss_pred hHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhh
Confidence 88887775432 22223335789999999999998644333221 3344455555555533 3455555566665554
No 399
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=23.43 E-value=9.2e+02 Score=25.72 Aligned_cols=206 Identities=18% Similarity=0.188 Sum_probs=100.8
Q ss_pred hHHHHHHHHHHHHhccCCc-chHHHHhcCChH-HHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHH-hhCChHHHHHh
Q 005282 292 ESKREAALLLGQFAAADSN-SKVHIVQRGAVR-PLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIA-QDGGILPLLKL 368 (704)
Q Consensus 292 ~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~-~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~-~~~~~~~L~~l 368 (704)
..|..|+.+|+.++..-+. .... ... .|...|.+....-|..++-+|...+........-. -....+.|..+
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~~~~~-----~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~ 176 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPESSLQE-----IFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEI 176 (441)
T ss_pred HHHHHHHHHHHHHHHhcccchHHH-----HHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHH
Confidence 3477888888888764322 2111 233 68888888888778888888888886543221111 11233456666
Q ss_pred hcCCChhHHHHHHHHHHHccc-CCchhhHHHhhCCcc-----c---ccccccccccc-------hHHHHHHHHHHHHHh-
Q 005282 369 LDSKNGSLQHNAAFALYGLAD-NEDNVADLVRVGGVQ-----K---LQDGEFTVQPT-------KDCVARTLKRLEEKV- 431 (704)
Q Consensus 369 l~~~~~~v~~~a~~~L~~l~~-~~~~~~~l~~~g~i~-----~---l~~~~~~~~~~-------~~~~~~~~~~~~~~~- 431 (704)
|....+..-.+....+..+-. ...-...+.+.|.++ . .++......+. .........++....
T Consensus 177 L~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~~l~ 256 (441)
T PF12054_consen 177 LENPEPPYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKKSLS 256 (441)
T ss_pred HcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHHhcC
Confidence 664433322333333333321 112223334444421 1 11111111111 011111111111111
Q ss_pred --------------hcc---hhHHHHHHHhhccHHHHHHHHHHHHhccCCCccceeeecCCcHHHHHHHHhh-cchhhhh
Q 005282 432 --------------HGR---VLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLES-TSVKQRE 493 (704)
Q Consensus 432 --------------~~~---~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~~~~ 493 (704)
... .+...-..-..-+..|+..++.++..+..-+.- =+-.|+.|.+-++. .+..+|.
T Consensus 257 ~~~k~~a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~~lP~K-----LnPiIrpLMdSIK~Een~~LQ~ 331 (441)
T PF12054_consen 257 PSQKLSALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVALGGLPKK-----LNPIIRPLMDSIKREENELLQQ 331 (441)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-----ccHHHHHHHHHhhccccHHHHH
Confidence 000 111111111223455667777777777332211 13457777777764 8899999
Q ss_pred hHHHHHHHHhhhcC
Q 005282 494 ESSVALYKLATKAT 507 (704)
Q Consensus 494 ~a~~~L~~L~~~~~ 507 (704)
.++.+|..|.....
T Consensus 332 rsA~slA~Li~~~~ 345 (441)
T PF12054_consen 332 RSAESLARLIQLCV 345 (441)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998774
No 400
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=22.83 E-value=5e+02 Score=22.45 Aligned_cols=71 Identities=13% Similarity=0.151 Sum_probs=52.9
Q ss_pred ChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCh-hhHHHHHHcCCHHH-HHHHhcC---CChhHHHHHHHHHHHHhc
Q 005282 236 ALPTLVLMLR-SEDASVHFEAVGVIGNLVHSSP-SIKKEVILAGALQP-VIGLLSS---SCSESKREAALLLGQFAA 306 (704)
Q Consensus 236 ~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~-L~~ll~~---~~~~~~~~a~~~L~~l~~ 306 (704)
++..|.+-|. +.++.++..|+..|-.+..+.. .....+...+++.- |+.++.. .+..++..++..+...+.
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 3556666666 4689999999999998887653 55666777889987 8999863 234778888888887764
No 401
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=22.75 E-value=6.7e+02 Score=23.84 Aligned_cols=161 Identities=14% Similarity=0.085 Sum_probs=99.4
Q ss_pred hCCChHHHHhhccCCCcCCC---CCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCC--CC-cc
Q 005282 90 DNGAVPALVEHLQTPPQLTN---AQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGG--NS-RA 163 (704)
Q Consensus 90 ~~g~i~~L~~lL~~~~~~~~---~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~--~~-~~ 163 (704)
....+..|+.+......-.. ....-...-....+..+..|...++....+.+.+.++.+.+.|...++.. .. ++
T Consensus 49 ~~kF~kRLl~FyrP~~~rfs~~~~~~~~~~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~ 128 (226)
T PF14666_consen 49 STKFFKRLLSFYRPFKYRFSNLDLNTKNNQKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDP 128 (226)
T ss_pred cChHHHHHHHhcCCccccccccccccccchHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCccccc
Confidence 45667778777775432110 00011134455667777777788888888889999999999998762221 11 10
Q ss_pred -------hhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCH-HHHHHHHHHHHHhccCCchhhHHhHhcC
Q 005282 164 -------LSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDV-KVQRAAAGALRTLAFKNDENKKLIVECN 235 (704)
Q Consensus 164 -------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 235 (704)
...+...-...++.++. ++.....+-+.++...+..+....+. ++.. ..+.++-...+ |
T Consensus 129 lfs~~~l~~tl~~~Yf~~IG~lS~-~~~Gl~lLe~~~if~~l~~i~~~~~~~~l~k---lil~~LDY~~~---------~ 195 (226)
T PF14666_consen 129 LFSPQRLSTTLSRGYFLFIGVLSS-TPNGLKLLERWNIFTMLYHIFSLSSRDDLLK---LILSSLDYSVD---------G 195 (226)
T ss_pred ccCHHHHHhhHHHHHHHHHHHHhC-ChhHHHHHHHCCHHHHHHHHHccCchHHHHH---HHHhhCCCCCc---------c
Confidence 11333444456777775 56666778888889999999886533 3332 24445432211 1
Q ss_pred ChH-HHHHhhcCCCHHHHHHHHHHHHHHh
Q 005282 236 ALP-TLVLMLRSEDASVHFEAVGVIGNLV 263 (704)
Q Consensus 236 ~i~-~L~~lL~~~~~~v~~~a~~~L~~l~ 263 (704)
-.. .|-+.|.+++..+|..|...|..+.
T Consensus 196 ~~R~iLsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 196 HPRIILSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 122 2446788899999999999988775
No 402
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=21.80 E-value=63 Score=33.94 Aligned_cols=70 Identities=23% Similarity=0.355 Sum_probs=50.3
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 005282 279 LQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQ 348 (704)
Q Consensus 279 l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 348 (704)
...+-.+..+.++++++.+..++.+++.+.+..+...-...+-..++.++..+.+++-+.+..++..+..
T Consensus 330 ~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 330 LKALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred HHHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 3444455567889999999999999987655544444444566778888887777777777777776664
No 403
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=21.56 E-value=4.9e+02 Score=21.89 Aligned_cols=70 Identities=13% Similarity=0.184 Sum_probs=43.6
Q ss_pred CHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhc--CChHHHHHhhCCC--------CHHHHHHHHHHHHHhh
Q 005282 278 ALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQR--GAVRPLIEMLQSP--------DSQLKEMSAFALGRLA 347 (704)
Q Consensus 278 ~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~L~~ll~~~--------~~~v~~~a~~~L~~l~ 347 (704)
++..|.+-|.+.++.++..++.+|..++....+.....+.. ..|..+..+-... ...||..|-.++.-+-
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence 46677888888888888999999999987665443333322 2344444433211 2367777766665544
No 404
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=21.17 E-value=1.5e+03 Score=27.20 Aligned_cols=137 Identities=15% Similarity=0.177 Sum_probs=86.8
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHHHhhCCcccccc
Q 005282 329 QSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQD 408 (704)
Q Consensus 329 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~ 408 (704)
++-++++|..+...|+-.+..-+ ..+.....+..+==.|++.+.+||..++.+|..|....+....+..
T Consensus 297 RDV~~~IRaiCiqeLgiWi~~yP--~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~l--------- 365 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWIKSYP--EIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLEL--------- 365 (1048)
T ss_pred ccCchHHHHHHHHHHHHHHHhcc--HHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHH---------
Confidence 45578999999999988775433 2233333344433456889999999999999999876443322211
Q ss_pred cccccccchHHHHHHHHHHHHHhhcchhHHHHHHH-hhccHHHHHHHHHHHHhccCCCccceeeecCCcHHHHHHHHhhc
Q 005282 409 GEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLL-RVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLEST 487 (704)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~~~ 487 (704)
+.+.+=..++.+. ..-+..|+......+...... .++...-+..+..++.++
T Consensus 366 ----------------------FtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~~~~-----g~L~d~di~~Vy~Li~d~ 418 (1048)
T KOG2011|consen 366 ----------------------FTSRFKDRIVEMADRDRNVSVRAVGLVLCLLLSSS-----GLLSDKDILIVYSLIYDS 418 (1048)
T ss_pred ----------------------HHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhcc-----cccChhHHHHHHHHHhcc
Confidence 0112233466666 444566665544443333221 345667788999999999
Q ss_pred chhhhhhHHHHHHHHh
Q 005282 488 SVKQREESSVALYKLA 503 (704)
Q Consensus 488 ~~~~~~~a~~~L~~L~ 503 (704)
+++++.+|..-|..-.
T Consensus 419 ~r~~~~aa~~fl~~k~ 434 (1048)
T KOG2011|consen 419 NRRVAVAAGEFLYKKL 434 (1048)
T ss_pred CcchHHHHHHHHHHHh
Confidence 9999988887776443
No 405
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=20.99 E-value=3.1e+02 Score=28.10 Aligned_cols=71 Identities=14% Similarity=0.192 Sum_probs=53.7
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh-hHHHHHHcCCHHHHHHHhc-CCChhHHHHHHHHHHHHhc
Q 005282 236 ALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPS-IKKEVILAGALQPVIGLLS-SSCSESKREAALLLGQFAA 306 (704)
Q Consensus 236 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~l~~L~~ll~-~~~~~~~~~a~~~L~~l~~ 306 (704)
++..+++-|++.++.|...|+..+..++.++.. .+..+....+..-|..++. +..+.+......++.+++.
T Consensus 46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999876543 4445556678888888887 5566666666666666653
No 406
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=20.82 E-value=2.2e+02 Score=22.13 Aligned_cols=66 Identities=15% Similarity=0.233 Sum_probs=44.3
Q ss_pred HhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhh----cCCChhHHHHHHHHHH
Q 005282 316 VQRGAVRPLIEMLQ-SPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLL----DSKNGSLQHNAAFALY 385 (704)
Q Consensus 316 ~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll----~~~~~~v~~~a~~~L~ 385 (704)
.+..++.++..++. ..+.++|+....++.++..... ..+..| .+.++..+ .+++.++...|..++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~---~~i~SG-W~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRG---ENIKSG-WKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhH---HHHHhc-cHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 34457888888865 4688999999999999986543 223344 45555554 3456677777766654
No 407
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=20.67 E-value=3.1e+02 Score=25.43 Aligned_cols=140 Identities=17% Similarity=0.093 Sum_probs=83.5
Q ss_pred HHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc--CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHH-
Q 005282 95 PALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA--VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRA- 171 (704)
Q Consensus 95 ~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~--~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a- 171 (704)
..+..++..... +.+..|+.++.... .++. .++.+-..+...+. |++....
T Consensus 54 ~l~~~L~~~~~~----------E~~~la~~il~~~~~~~~~~---------~~~~~~~~~~~~~~-------W~~~D~~~ 107 (213)
T PF08713_consen 54 ELADELWESGYR----------EERYLALLILDKRRKKLTEE---------DLELLEKWLPDIDN-------WATCDSLC 107 (213)
T ss_dssp HHHHHHHCSSCH----------HHHHHHHHHHHHCGGG--HH---------HHHHHHHCCCCCCC-------HHHHHHHT
T ss_pred HHHHHHcCCchH----------HHHHHHHHHhHHHhhhhhHH---------HHHHHHHHhccCCc-------chhhhHHH
Confidence 344555666544 77777777776544 1111 22334444443322 5555555
Q ss_pred HHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHH
Q 005282 172 ADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASV 251 (704)
Q Consensus 172 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v 251 (704)
...++.+.... ....+.+...+.++++-.++.++.++...... .... ..+..+...+.+++.-+
T Consensus 108 ~~~~~~~~~~~---------~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~--~~~~-----~~l~~~~~~~~d~~~~v 171 (213)
T PF08713_consen 108 SKLLGPLLKKH---------PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK--EDFD-----ELLEIIEALLKDEEYYV 171 (213)
T ss_dssp HHHHHHHHHHH---------GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG--CHHH-----HHHHHHHHCTTGS-HHH
T ss_pred HHHHHHHHHhh---------HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh--cCHH-----HHHHHHHHHcCCchHHH
Confidence 33344443211 33466788888899999999888777665542 1111 12344555667888999
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHc
Q 005282 252 HFEAVGVIGNLVHSSPSIKKEVILA 276 (704)
Q Consensus 252 ~~~a~~~L~~l~~~~~~~~~~~~~~ 276 (704)
+....|+|..++..++......+..
T Consensus 172 q~ai~w~L~~~~~~~~~~v~~~l~~ 196 (213)
T PF08713_consen 172 QKAIGWALREIGKKDPDEVLEFLQK 196 (213)
T ss_dssp HHHHHHHHHHHCTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 9999999999998887766655544
No 408
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=20.49 E-value=6.7e+02 Score=27.05 Aligned_cols=39 Identities=28% Similarity=0.330 Sum_probs=31.7
Q ss_pred hhhhhhhccCCcHHHHHHhc-CCCHHHHHHHHHHHHHhcc
Q 005282 184 NIKTRVRVEDGIPPLVELLK-FVDVKVQRAAAGALRTLAF 222 (704)
Q Consensus 184 ~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~ 222 (704)
....++.+.+.++.|+.+|. +.+++++..|+..|..+..
T Consensus 53 ~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~ 92 (475)
T PF04499_consen 53 GILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIR 92 (475)
T ss_pred HHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 44567777899999999998 5678899999998888854
Done!