Query 005282
Match_columns 704
No_of_seqs 499 out of 4204
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 20:50:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005282.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005282hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ul1_B Importin subunit alpha- 100.0 1.6E-38 5.6E-43 343.8 30.4 403 47-503 59-477 (510)
2 3tpo_A Importin subunit alpha- 100.0 1.8E-37 6E-42 337.8 30.1 387 66-503 91-496 (529)
3 3now_A UNC-45 protein, SD10334 100.0 1.1E-36 3.8E-41 334.6 26.2 417 68-505 264-738 (810)
4 4b8j_A Importin subunit alpha- 100.0 1.1E-35 3.8E-40 325.2 31.7 403 47-506 76-498 (528)
5 3nmz_A APC variant protein; pr 100.0 8.3E-36 2.8E-40 310.8 25.4 362 70-465 48-452 (458)
6 1wa5_B Importin alpha subunit; 100.0 2.2E-34 7.4E-39 314.8 34.9 404 51-506 89-512 (530)
7 3now_A UNC-45 protein, SD10334 100.0 1.9E-35 6.5E-40 324.7 26.3 436 50-506 291-784 (810)
8 3ul1_B Importin subunit alpha- 100.0 2.5E-34 8.4E-39 311.0 30.2 365 51-462 102-477 (510)
9 3l6x_A Catenin delta-1; cateni 100.0 1.9E-34 6.6E-39 306.6 28.6 363 90-506 46-478 (584)
10 1jdh_A Beta-catenin; beta-cate 100.0 7.7E-35 2.6E-39 319.4 25.9 418 64-503 73-529 (529)
11 3tpo_A Importin subunit alpha- 100.0 5.5E-34 1.9E-38 310.3 31.2 364 51-461 121-495 (529)
12 2z6h_A Catenin beta-1, beta-ca 100.0 2.6E-34 8.9E-39 321.1 28.0 421 64-506 70-529 (644)
13 3nmz_A APC variant protein; pr 100.0 8.6E-35 2.9E-39 303.1 21.2 369 92-507 32-453 (458)
14 1xm9_A Plakophilin 1; armadill 100.0 3E-34 1E-38 305.3 25.9 360 93-507 3-452 (457)
15 3l6x_A Catenin delta-1; cateni 100.0 6.6E-34 2.3E-38 302.5 27.2 371 46-475 49-488 (584)
16 2jdq_A Importin alpha-1 subuni 100.0 2.2E-33 7.5E-38 301.2 29.9 390 64-505 33-444 (450)
17 2z6g_A B-catenin; FULL-length, 100.0 5E-34 1.7E-38 323.2 24.8 435 50-507 193-666 (780)
18 1jdh_A Beta-catenin; beta-cate 100.0 2.8E-33 9.4E-38 307.0 30.0 435 44-505 16-490 (529)
19 1xm9_A Plakophilin 1; armadill 100.0 4E-33 1.4E-37 296.7 27.5 362 47-469 4-455 (457)
20 4b8j_A Importin subunit alpha- 100.0 2.8E-32 9.6E-37 298.3 29.5 364 92-506 74-445 (528)
21 2z6h_A Catenin beta-1, beta-ca 100.0 1.1E-31 3.7E-36 300.0 33.1 433 46-505 15-487 (644)
22 1wa5_B Importin alpha subunit; 100.0 2.2E-31 7.5E-36 291.0 32.7 368 90-507 85-460 (530)
23 2z6g_A B-catenin; FULL-length, 100.0 5.1E-31 1.8E-35 298.5 32.9 432 51-505 152-623 (780)
24 2jdq_A Importin alpha-1 subuni 100.0 2.7E-30 9.1E-35 277.2 32.1 374 50-463 65-443 (450)
25 3nmw_A APC variant protein; AR 100.0 2.7E-30 9.2E-35 261.7 24.1 280 112-392 43-337 (354)
26 3nmw_A APC variant protein; AR 100.0 7.4E-30 2.5E-34 258.5 22.8 281 66-354 47-340 (354)
27 3hve_A Gigaxonin; ubiquitin, c 100.0 1.5E-28 5E-33 239.9 17.8 163 525-687 21-185 (256)
28 3htm_A Speckle-type POZ protei 100.0 8.7E-28 3E-32 219.7 16.4 147 527-673 26-172 (172)
29 3i3n_A Kelch-like protein 11; 100.0 4.3E-28 1.5E-32 239.7 13.6 162 526-687 23-193 (279)
30 4hxt_A De novo protein OR329; 99.9 1E-25 3.4E-30 221.1 23.1 243 92-352 2-245 (252)
31 4hxt_A De novo protein OR329; 99.9 4.4E-25 1.5E-29 216.5 22.4 242 143-392 2-244 (252)
32 4db8_A Armadillo-repeat protei 99.9 5.4E-25 1.8E-29 215.8 21.2 239 92-348 12-251 (252)
33 4db8_A Armadillo-repeat protei 99.9 1.6E-24 5.5E-29 212.4 23.0 239 143-389 12-251 (252)
34 3opb_A SWI5-dependent HO expre 99.9 1.1E-24 3.7E-29 234.3 22.9 385 69-506 273-730 (778)
35 3hqi_A Speckle-type POZ protei 99.9 5.2E-25 1.8E-29 221.8 17.1 147 527-673 166-312 (312)
36 4eoz_A Speckle-type POZ protei 99.9 3E-25 1E-29 196.5 8.1 129 527-655 17-145 (145)
37 3opb_A SWI5-dependent HO expre 99.9 2.3E-22 7.7E-27 216.4 29.1 380 70-506 231-685 (778)
38 4db6_A Armadillo repeat protei 99.9 3.9E-22 1.3E-26 189.4 21.3 200 190-389 9-209 (210)
39 4db6_A Armadillo repeat protei 99.9 7.5E-22 2.6E-26 187.4 20.6 200 141-348 10-209 (210)
40 2vkp_A BTB/POZ domain-containi 99.9 1.2E-22 4.1E-27 169.6 11.6 104 529-633 2-109 (109)
41 1xqr_A HSPBP1 protein; armadil 99.9 2.6E-21 8.9E-26 190.4 22.4 227 62-305 51-286 (296)
42 2if5_A Zinc finger and BTB dom 99.9 2E-22 6.9E-27 171.3 11.8 104 526-629 16-119 (120)
43 1r29_A B-cell lymphoma 6 prote 99.9 6.4E-22 2.2E-26 169.9 12.6 105 526-631 20-125 (127)
44 1xqr_A HSPBP1 protein; armadil 99.9 6.3E-21 2.2E-25 187.7 19.7 225 116-348 54-287 (296)
45 2ppi_A Gigaxonin; BTB domain, 99.9 8E-22 2.7E-26 172.4 9.7 103 527-629 39-143 (144)
46 2z8h_A Transcription regulator 99.9 7.4E-22 2.5E-26 171.9 9.4 109 527-637 28-137 (138)
47 3b84_A Zinc finger and BTB dom 99.9 9.5E-22 3.2E-26 166.3 9.1 101 527-631 16-116 (119)
48 1buo_A POZ domain, protein (pr 99.9 2.4E-21 8.3E-26 164.5 11.2 103 526-633 19-121 (121)
49 2yy9_A Zinc finger and BTB dom 99.8 1.5E-21 5.1E-26 168.9 8.7 107 526-636 16-122 (135)
50 2vpk_A Myoneurin; transcriptio 99.8 4.4E-21 1.5E-25 161.7 11.3 100 527-630 14-115 (116)
51 3tt9_A Plakophilin-2; cell adh 99.8 3.2E-20 1.1E-24 174.1 15.2 196 93-306 9-229 (233)
52 3tt9_A Plakophilin-2; cell adh 99.8 5.4E-20 1.8E-24 172.6 16.6 195 236-463 9-229 (233)
53 2q81_A MIZ-1 protein; BTB/POZ 99.8 9.6E-21 3.3E-25 160.1 9.2 99 527-630 19-117 (119)
54 3ohu_A Transcription regulator 99.8 2.6E-21 9E-26 165.6 4.0 101 527-629 24-125 (125)
55 3ga1_A Nucleus accumbens-assoc 99.8 7.7E-21 2.6E-25 163.4 6.7 102 527-632 25-127 (129)
56 2ihc_A Transcription regulator 99.8 3.9E-21 1.3E-25 163.9 4.2 102 527-630 21-123 (124)
57 3m5b_A Zinc finger and BTB dom 99.8 1.4E-19 4.6E-24 152.0 8.5 94 529-631 24-117 (119)
58 3fkc_A Transcriptional regulat 99.8 4.1E-19 1.4E-23 148.8 9.3 93 526-623 22-115 (116)
59 3grl_A General vesicular trans 99.7 1.7E-15 5.7E-20 158.8 28.2 337 39-399 15-405 (651)
60 3grl_A General vesicular trans 99.7 4.5E-14 1.5E-18 148.1 28.9 417 44-504 59-550 (651)
61 1b3u_A Protein (protein phosph 99.7 2.3E-15 7.9E-20 166.8 20.0 416 48-503 163-586 (588)
62 4fdd_A Transportin-1; heat rep 99.6 4.5E-15 1.5E-19 171.5 21.2 379 62-507 59-474 (852)
63 4fdd_A Transportin-1; heat rep 99.6 9.7E-15 3.3E-19 168.7 21.0 382 64-506 103-514 (852)
64 1b3u_A Protein (protein phosph 99.6 3.3E-14 1.1E-18 157.5 24.1 370 63-506 99-472 (588)
65 1ibr_B P95, importin beta-1 su 99.6 2.2E-13 7.5E-18 145.9 24.2 391 50-507 3-440 (462)
66 2vgl_B AP-2 complex subunit be 99.5 4.5E-13 1.5E-17 147.2 23.3 354 62-504 97-457 (591)
67 2vgl_B AP-2 complex subunit be 99.5 3.8E-13 1.3E-17 147.8 22.6 356 65-507 63-422 (591)
68 1oyz_A Hypothetical protein YI 99.5 1.7E-12 5.8E-17 128.7 24.2 258 139-500 19-278 (280)
69 1oyz_A Hypothetical protein YI 99.5 6.3E-12 2.1E-16 124.5 23.4 229 191-504 21-250 (280)
70 1w63_A Adapter-related protein 99.5 8.5E-12 2.9E-16 137.5 26.3 133 63-226 119-267 (618)
71 2ast_A S-phase kinase-associat 99.4 4.7E-13 1.6E-17 118.1 11.5 110 538-648 3-144 (159)
72 1w63_A Adapter-related protein 99.4 1.4E-10 4.7E-15 127.8 32.8 343 69-506 88-453 (618)
73 1qgr_A Protein (importin beta 99.4 1.5E-12 5.1E-17 151.4 16.0 434 47-507 170-682 (876)
74 2bpt_A Importin beta-1 subunit 99.4 6.5E-12 2.2E-16 145.7 20.8 433 47-506 177-670 (861)
75 3ltm_A Alpha-REP4; protein eng 99.4 1.5E-11 5.2E-16 116.0 18.4 190 234-508 18-207 (211)
76 1ibr_B P95, importin beta-1 su 99.4 2E-11 7E-16 130.5 21.3 354 48-464 34-438 (462)
77 1qgr_A Protein (importin beta 99.4 5E-11 1.7E-15 138.5 25.8 396 48-506 34-481 (876)
78 2bpt_A Importin beta-1 subunit 99.4 8.2E-11 2.8E-15 136.5 26.6 394 48-506 38-484 (861)
79 3ltm_A Alpha-REP4; protein eng 99.3 2.6E-11 9E-16 114.4 17.2 189 142-392 18-206 (211)
80 3ltj_A Alpharep-4; protein eng 99.3 9.4E-11 3.2E-15 109.6 19.0 186 234-504 13-198 (201)
81 3ltj_A Alpharep-4; protein eng 99.3 6.6E-11 2.2E-15 110.7 16.6 184 143-388 14-197 (201)
82 4ajy_C Transcription elongatio 99.3 2E-11 6.9E-16 97.4 9.1 80 538-618 4-97 (97)
83 2vgl_A Adaptor protein complex 99.2 1.8E-08 6.1E-13 110.5 31.9 356 64-506 87-472 (621)
84 1u6g_C TIP120 protein, CAND1; 99.2 2E-09 6.9E-14 129.4 24.2 405 64-504 19-506 (1230)
85 1u6g_C TIP120 protein, CAND1; 99.1 4.8E-09 1.6E-13 126.1 24.6 399 46-507 130-601 (1230)
86 1fs1_B SKP1, cyclin A/CDK2-ass 99.1 3.1E-10 1E-14 97.5 9.5 98 538-640 4-128 (141)
87 2vgl_A Adaptor protein complex 99.1 1.4E-07 4.7E-12 103.5 32.1 354 65-506 52-435 (621)
88 4gmo_A Putative uncharacterize 99.0 2.8E-09 9.7E-14 118.5 13.9 193 94-305 36-257 (684)
89 2p1m_A SKP1-like protein 1A; F 99.0 7.9E-11 2.7E-15 103.6 0.5 108 538-649 6-144 (160)
90 4gmo_A Putative uncharacterize 98.9 1.2E-08 4E-13 113.6 14.8 201 49-263 35-257 (684)
91 2db0_A 253AA long hypothetical 98.7 1.7E-06 5.7E-11 74.2 19.4 217 89-348 29-246 (253)
92 3b2a_A TON_1937, putative unch 98.7 1.1E-06 3.7E-11 79.0 18.3 213 235-499 33-256 (265)
93 1ho8_A Vacuolar ATP synthase s 98.7 5.2E-06 1.8E-10 84.3 23.9 343 143-506 77-478 (480)
94 1hv2_A Elongin C, ELC1; protei 98.6 1.4E-07 4.9E-12 74.9 8.7 80 537-618 5-99 (99)
95 3b2a_A TON_1937, putative unch 98.6 1.5E-06 5.2E-11 78.1 15.8 188 193-391 33-220 (265)
96 4ady_A RPN2, 26S proteasome re 98.6 6.3E-05 2.1E-09 83.6 32.0 266 62-389 406-676 (963)
97 4ady_A RPN2, 26S proteasome re 98.6 4.2E-05 1.4E-09 84.9 30.0 319 93-503 393-718 (963)
98 2fnj_C Transcription elongatio 98.6 1.3E-07 4.5E-12 74.7 7.3 80 538-618 3-96 (96)
99 2db0_A 253AA long hypothetical 98.6 1.3E-05 4.5E-10 68.8 19.5 215 141-388 30-245 (253)
100 3v7d_A Suppressor of kinetocho 98.5 5.9E-07 2E-11 79.3 11.4 97 537-634 8-134 (169)
101 2qk2_A LP04448P; mini spindles 98.5 8.3E-07 2.8E-11 85.2 12.4 185 196-389 18-205 (242)
102 3tjz_B Coatomer subunit gamma; 98.5 4.2E-06 1.4E-10 83.3 16.6 244 94-389 70-316 (355)
103 2eqx_A Kelch repeat and BTB do 98.4 2E-07 6.9E-12 75.5 5.0 60 629-688 4-63 (105)
104 2qk2_A LP04448P; mini spindles 98.4 1.9E-06 6.5E-11 82.6 12.2 185 147-349 19-206 (242)
105 2qk1_A Protein STU2; STU2P, XM 98.3 3.1E-06 1.1E-10 81.0 12.0 191 197-389 20-220 (249)
106 3tjz_B Coatomer subunit gamma; 98.3 1.5E-05 5.1E-10 79.3 15.9 246 194-507 69-319 (355)
107 1ho8_A Vacuolar ATP synthase s 98.3 0.00013 4.5E-09 74.2 22.4 261 116-388 139-475 (480)
108 3drz_A BTB/POZ domain-containi 98.3 6.2E-06 2.1E-10 66.7 10.3 95 536-631 6-106 (107)
109 1te4_A Conserved protein MTH18 98.2 1.2E-07 4.1E-12 81.2 -0.2 122 191-346 10-131 (131)
110 1te4_A Conserved protein MTH18 98.2 1.3E-07 4.4E-12 81.0 -0.8 121 234-387 11-131 (131)
111 2qk1_A Protein STU2; STU2P, XM 98.2 3.7E-06 1.3E-10 80.4 9.1 193 282-507 21-223 (249)
112 1vcb_B Protein (elongin C); tu 98.2 3.6E-06 1.2E-10 68.2 7.2 81 537-618 18-112 (112)
113 1wa5_C Importin alpha RE-expor 98.0 0.0011 3.8E-08 77.1 25.8 413 47-505 4-526 (960)
114 3dad_A FH1/FH2 domain-containi 97.9 0.00018 6.2E-09 69.4 14.4 177 95-289 121-317 (339)
115 3dad_A FH1/FH2 domain-containi 97.8 0.00056 1.9E-08 66.0 16.6 183 147-338 122-326 (339)
116 1wa5_C Importin alpha RE-expor 97.8 0.0031 1.1E-07 73.3 25.3 384 65-506 99-584 (960)
117 2iw3_A Elongation factor 3A; a 97.7 0.00031 1.1E-08 79.1 13.7 294 199-506 20-326 (986)
118 2iw3_A Elongation factor 3A; a 97.4 0.032 1.1E-06 63.0 25.1 246 69-347 70-323 (986)
119 2x1g_F Cadmus; transport prote 97.3 0.016 5.3E-07 67.6 21.9 386 65-506 99-574 (971)
120 2x19_B Importin-13; nuclear tr 97.0 0.32 1.1E-05 56.4 29.7 334 115-506 462-848 (963)
121 3drx_A BTB/POZ domain-containi 97.0 0.00098 3.4E-08 59.4 6.1 96 535-631 11-112 (202)
122 4ffb_C Protein STU2; tubulin f 97.0 0.028 9.4E-07 54.5 17.2 188 195-389 12-212 (278)
123 2fv2_A RCD1 required for cell 96.9 0.013 4.4E-07 53.9 12.8 176 68-262 73-266 (268)
124 3m1i_C Exportin-1; heat repeat 96.9 0.043 1.5E-06 64.4 21.0 184 50-264 18-224 (1049)
125 3ibv_A Exportin-T; karyopherin 96.9 0.071 2.4E-06 61.5 21.9 303 166-507 208-569 (980)
126 2x19_B Importin-13; nuclear tr 96.8 0.19 6.5E-06 58.3 25.9 95 287-389 459-556 (963)
127 3oc3_A Helicase MOT1, MOT1; re 96.8 0.0063 2.1E-07 62.3 11.1 250 93-385 175-432 (800)
128 1lrv_A LRV, leucine-rich repea 96.8 0.0013 4.4E-08 61.9 5.6 179 81-384 63-241 (244)
129 1upk_A MO25 protein; transfera 96.8 0.051 1.8E-06 52.4 16.4 208 189-399 74-293 (341)
130 3oc3_A Helicase MOT1, MOT1; re 96.8 0.009 3.1E-07 61.2 11.5 203 164-388 187-403 (800)
131 2x1g_F Cadmus; transport prote 96.7 0.14 5E-06 59.4 23.7 217 116-348 478-722 (971)
132 2of3_A ZYG-9; multifunctional 96.7 0.024 8.2E-07 53.6 13.7 174 198-388 51-235 (266)
133 4hat_C Exportin-1; heat repeat 96.5 0.13 4.3E-06 59.5 20.7 317 43-389 188-569 (1023)
134 1upk_A MO25 protein; transfera 96.5 0.17 5.7E-06 48.9 18.0 204 137-352 72-287 (341)
135 4ffb_C Protein STU2; tubulin f 96.5 0.059 2E-06 52.2 15.3 179 164-349 22-213 (278)
136 3m1i_C Exportin-1; heat repeat 96.3 0.17 5.9E-06 59.2 20.9 297 116-463 209-569 (1049)
137 4hat_C Exportin-1; heat repeat 96.3 0.038 1.3E-06 63.8 14.7 141 164-309 466-621 (1023)
138 2fv2_A RCD1 required for cell 96.2 0.15 5.3E-06 46.9 14.9 223 117-346 16-266 (268)
139 3ibv_A Exportin-T; karyopherin 96.2 0.043 1.5E-06 63.3 14.2 302 64-389 206-566 (980)
140 2of3_A ZYG-9; multifunctional 95.9 0.28 9.5E-06 46.3 16.0 166 166-348 61-236 (266)
141 3gjx_A Exportin-1; transport, 95.9 1.1 3.8E-05 51.6 23.9 353 92-508 150-599 (1073)
142 1lrv_A LRV, leucine-rich repea 95.9 0.014 4.9E-07 54.7 7.0 175 62-344 61-242 (244)
143 3l9t_A Putative uncharacterize 95.7 0.11 3.8E-06 47.4 11.6 144 237-400 73-219 (240)
144 3kvt_A Potassium channel prote 95.7 0.0048 1.7E-07 50.0 2.5 96 537-633 6-106 (115)
145 3a6p_A Exportin-5; exportin-5, 95.4 0.72 2.5E-05 54.6 20.5 260 61-350 57-382 (1204)
146 1s1g_A Potassium voltage-gated 95.3 0.038 1.3E-06 45.4 6.5 91 536-630 13-110 (124)
147 3ebb_A Phospholipase A2-activa 95.0 2.1 7.1E-05 41.4 19.1 193 94-301 105-300 (304)
148 3l9t_A Putative uncharacterize 94.9 0.23 8E-06 45.3 11.1 133 116-275 85-218 (240)
149 3u0r_A Apoptosis inhibitor 5; 94.7 3.9 0.00013 41.5 20.3 161 65-262 42-204 (507)
150 3c2g_A SYS-1 protein; beta-cat 94.6 0.71 2.4E-05 44.3 14.0 135 167-304 259-401 (619)
151 3c2g_A SYS-1 protein; beta-cat 94.6 0.66 2.3E-05 44.5 13.6 136 118-263 259-402 (619)
152 2nz0_B Potassium voltage-gated 94.6 0.051 1.7E-06 45.6 5.6 92 535-630 34-132 (140)
153 3ebb_A Phospholipase A2-activa 94.3 1.2 3.9E-05 43.2 15.2 174 195-371 105-287 (304)
154 1nn7_A Potassium channel KV4.2 94.2 0.036 1.2E-06 44.1 3.7 89 538-630 2-97 (105)
155 2f31_A Diaphanous protein homo 93.9 3.4 0.00012 38.3 17.3 162 131-293 32-215 (233)
156 1t1d_A Protein (potassium chan 93.7 0.067 2.3E-06 42.0 4.3 84 538-622 3-90 (100)
157 3gjx_A Exportin-1; transport, 93.5 4.5 0.00016 46.7 20.8 100 289-389 491-595 (1073)
158 3eg5_B Protein diaphanous homo 93.0 5.2 0.00018 40.2 18.0 156 131-288 98-275 (383)
159 3u0r_A Apoptosis inhibitor 5; 92.6 4.2 0.00015 41.3 16.4 162 166-347 43-205 (507)
160 1lsh_A Lipovitellin (LV-1N, LV 91.4 6.7 0.00023 45.5 18.9 167 195-390 393-577 (1056)
161 2bnx_A Diaphanous protein homo 91.1 13 0.00046 37.2 18.6 162 131-293 36-219 (386)
162 3a6p_A Exportin-5; exportin-5, 89.0 21 0.00071 42.2 20.7 304 48-387 11-378 (1204)
163 3qml_C Protein SLS1, nucleotid 87.6 15 0.0005 35.0 14.4 168 39-221 16-188 (315)
164 1lsh_A Lipovitellin (LV-1N, LV 86.7 19 0.00066 41.7 18.1 170 145-352 393-580 (1056)
165 3eg5_B Protein diaphanous homo 86.4 13 0.00043 37.3 14.5 142 234-377 108-282 (383)
166 2f31_A Diaphanous protein homo 85.1 23 0.00079 32.5 15.2 145 192-338 42-218 (233)
167 3qml_C Protein SLS1, nucleotid 84.7 5.2 0.00018 38.0 9.8 145 238-388 25-188 (315)
168 2eqx_A Kelch repeat and BTB do 77.4 2.8 9.6E-05 33.1 4.6 37 597-633 4-40 (105)
169 2bnx_A Diaphanous protein homo 77.3 28 0.00096 34.8 13.0 131 248-379 71-222 (386)
170 2vkp_A BTB/POZ domain-containi 75.1 3.5 0.00012 32.6 4.7 33 632-664 76-108 (109)
171 3gs3_A Symplekin, LD45768P; he 67.4 80 0.0027 29.3 19.6 197 44-271 11-250 (257)
172 3o2t_A Symplekin; heat repeat, 65.5 1.1E+02 0.0038 30.3 15.9 68 191-263 61-128 (386)
173 3o2t_A Symplekin; heat repeat, 63.0 53 0.0018 32.7 11.0 129 250-388 40-182 (386)
174 3gs3_A Symplekin, LD45768P; he 60.2 1.1E+02 0.0037 28.4 15.0 129 250-388 30-172 (257)
175 2r9r_B Paddle chimera voltage 57.8 12 0.00041 39.2 5.8 86 536-622 52-141 (514)
176 1r29_A B-cell lymphoma 6 prote 57.6 8.4 0.00029 31.4 3.7 32 633-664 95-126 (127)
177 1x5b_A Signal transducing adap 56.8 47 0.0016 28.4 8.4 71 193-263 52-124 (163)
178 3gae_A Protein DOA1; UFD3, CDC 56.5 22 0.00075 33.1 6.7 107 116-225 104-220 (253)
179 1mhq_A ADP-ribosylation factor 55.7 62 0.0021 27.1 8.8 72 193-264 38-116 (148)
180 2yy9_A Zinc finger and BTB dom 54.4 5.6 0.00019 33.0 2.1 37 632-668 86-122 (135)
181 1buo_A POZ domain, protein (pr 54.1 16 0.00054 29.4 4.7 32 633-664 89-120 (121)
182 2q81_A MIZ-1 protein; BTB/POZ 54.1 13 0.00045 29.8 4.2 31 632-662 87-117 (119)
183 1juq_A ADP-ribosylation factor 53.8 60 0.002 28.0 8.6 71 194-264 51-128 (171)
184 3ldz_A STAM-1, signal transduc 53.3 57 0.0019 27.0 8.1 71 193-263 42-113 (140)
185 3b84_A Zinc finger and BTB dom 53.3 7.7 0.00026 31.3 2.7 32 633-664 86-117 (119)
186 1x5b_A Signal transducing adap 53.2 23 0.0008 30.3 5.8 71 236-306 53-125 (163)
187 1mhq_A ADP-ribosylation factor 52.7 25 0.00084 29.6 5.8 72 236-307 39-117 (148)
188 3htm_A Speckle-type POZ protei 51.5 13 0.00044 32.1 4.1 34 601-634 132-165 (172)
189 3ldz_A STAM-1, signal transduc 50.9 22 0.00074 29.6 5.1 71 236-306 43-114 (140)
190 2vpk_A Myoneurin; transcriptio 50.5 16 0.00055 29.0 4.2 30 633-662 86-115 (116)
191 2if5_A Zinc finger and BTB dom 48.1 21 0.00071 28.6 4.6 29 633-661 91-119 (120)
192 3g2s_A C-terminal fragment of 47.8 91 0.0031 26.1 8.5 72 193-264 48-126 (149)
193 1vsy_5 Proteasome activator BL 47.6 1.1E+02 0.0038 34.9 11.9 218 278-505 134-366 (997)
194 1juq_A ADP-ribosylation factor 46.5 27 0.00093 30.2 5.2 71 237-307 52-129 (171)
195 3i3n_A Kelch-like protein 11; 44.3 42 0.0014 31.7 6.8 81 600-681 138-240 (279)
196 2z8h_A Transcription regulator 44.1 5.7 0.0002 33.1 0.5 34 632-665 100-133 (138)
197 3pst_A Protein DOA1; protein d 43.5 78 0.0027 31.8 8.6 106 116-224 276-391 (425)
198 3l3f_X Protein DOA1, DOA1/UFD3 43.3 58 0.002 32.0 7.5 106 116-224 213-328 (362)
199 3zyq_A Hepatocyte growth facto 42.7 1.2E+02 0.004 27.5 9.2 105 151-264 12-118 (226)
200 3g2s_A C-terminal fragment of 40.5 53 0.0018 27.5 6.0 72 236-307 49-127 (149)
201 1fs1_B SKP1, cyclin A/CDK2-ass 38.8 1E+02 0.0035 25.4 7.5 81 585-667 25-123 (141)
202 3gae_A Protein DOA1; UFD3, CDC 38.8 58 0.002 30.3 6.5 132 210-351 71-220 (253)
203 2ast_A S-phase kinase-associat 37.9 46 0.0016 28.3 5.4 64 601-666 49-127 (159)
204 2ppi_A Gigaxonin; BTB domain, 35.0 19 0.00066 30.0 2.4 29 633-661 115-143 (144)
205 4eoz_A Speckle-type POZ protei 34.9 19 0.00065 29.9 2.4 34 633-666 91-124 (145)
206 1vsy_5 Proteasome activator BL 34.9 18 0.00061 41.4 2.8 183 194-389 761-966 (997)
207 1elk_A Target of MYB1; superhe 34.1 2.1E+02 0.0072 24.1 8.9 71 193-263 53-129 (157)
208 3hqi_A Speckle-type POZ protei 33.4 32 0.0011 33.1 4.1 33 601-633 272-304 (312)
209 3m5b_A Zinc finger and BTB dom 32.8 35 0.0012 27.3 3.5 32 632-663 86-117 (119)
210 3s4w_B Protein FACD2, fanconi 32.7 6.7E+02 0.023 29.5 22.2 285 67-388 173-506 (1323)
211 2b6c_A Hypothetical protein EF 29.8 3E+02 0.01 24.6 12.5 128 117-275 70-199 (220)
212 3pst_A Protein DOA1; protein d 27.7 1.3E+02 0.0044 30.3 7.2 101 165-269 276-394 (425)
213 2plx_B Peptide inhibitor; heli 27.5 48 0.0016 17.2 2.1 22 639-660 2-23 (26)
214 1dvp_A HRS, hepatocyte growth 26.2 2.6E+02 0.0088 25.1 8.6 71 193-263 42-114 (220)
215 1elk_A Target of MYB1; superhe 26.1 1.1E+02 0.0036 26.0 5.5 71 236-306 54-130 (157)
216 3ga1_A Nucleus accumbens-assoc 25.9 12 0.00041 30.6 -0.5 33 632-664 95-127 (129)
217 3zyq_A Hepatocyte growth facto 25.4 78 0.0027 28.8 4.9 71 236-306 46-118 (226)
218 3l3f_X Protein DOA1, DOA1/UFD3 25.0 1.2E+02 0.0043 29.6 6.5 100 165-268 213-330 (362)
219 3fga_B Serine/threonine-protei 23.6 5.5E+02 0.019 25.5 14.7 239 82-350 119-368 (403)
220 1dvp_A HRS, hepatocyte growth 22.2 1.2E+02 0.0042 27.2 5.6 70 236-305 43-114 (220)
221 3hve_A Gigaxonin; ubiquitin, c 21.2 70 0.0024 29.6 3.8 34 632-665 98-131 (256)
222 2npp_B PP2A, B subunit, serine 20.2 6.8E+02 0.023 25.3 11.2 269 57-351 126-402 (449)
No 1
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=1.6e-38 Score=343.76 Aligned_cols=403 Identities=20% Similarity=0.287 Sum_probs=340.3
Q ss_pred HHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHH
Q 005282 47 IRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFAL 126 (704)
Q Consensus 47 ~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L 126 (704)
+++++..+ .+.+.+.+.....+++.|.+...+|.. +.+++.|+||.|+++|+..+. ++++..|+|+|
T Consensus 59 i~~~v~~l---~s~d~~~q~~a~~~~rklls~e~~ppi-~~ii~~G~ip~LV~lL~~~~~---------~~lq~~Aa~aL 125 (510)
T 3ul1_B 59 VEDIVKGI---NSNNLESQLQATQAARKLLSREKQPPI-DNIIRAGLIPKFVSFLGKTDC---------SPIQFESAWAL 125 (510)
T ss_dssp HHHHHHHH---TSSCHHHHHHHHHHHHHHHTCSSCCCH-HHHHHTTHHHHHHHHTTCTTC---------HHHHHHHHHHH
T ss_pred HHHHHHHh---cCCCHHHHHHHHHHHHHHhcCCCCchH-HHHHHCCCHHHHHHHHCCCCC---------HHHHHHHHHHH
Confidence 56666554 344444444444444444333345555 677899999999999987653 58999999999
Q ss_pred Hhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCC
Q 005282 127 GLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFV 205 (704)
Q Consensus 127 ~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~ 205 (704)
+||+ ++++.+..+++.|++|.|+.+|++++. ++++.|+|+|+|++.+++..+..+...|+++.|+.++.++
T Consensus 126 ~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~--------~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~ 197 (510)
T 3ul1_B 126 TNIASGTSEQTKAVVDGGAIPAFISLLASPHA--------HISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVP 197 (510)
T ss_dssp HHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSS
T ss_pred HHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhc
Confidence 9999 899999999999999999999998765 9999999999999998999999999999999999999865
Q ss_pred C-----HHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHH
Q 005282 206 D-----VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQ 280 (704)
Q Consensus 206 ~-----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 280 (704)
+ ..+++.+++++.+++.+...........++++.|+.++.+++++++..++++|.+++..++.....+...|+++
T Consensus 198 ~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~ 277 (510)
T 3ul1_B 198 DLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVP 277 (510)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHH
T ss_pred cchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccch
Confidence 4 45788999999999975555444455567899999999999999999999999999988888888888999999
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchh-hhHHhh
Q 005282 281 PVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQ-AGIAQD 359 (704)
Q Consensus 281 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~ 359 (704)
.|+.++.+++..++..++++|+|++.+++.....+.+.|+++.|+.++++++..+++.|+|+|+|++.+.... ..+.+.
T Consensus 278 ~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~ 357 (510)
T 3ul1_B 278 QLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNH 357 (510)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred hhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhc
Confidence 9999999999999999999999999888888888999999999999999999999999999999999876554 456778
Q ss_pred CChHHHHHhhcCCChhHHHHHHHHHHHccc--CCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhH
Q 005282 360 GGILPLLKLLDSKNGSLQHNAAFALYGLAD--NEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLN 437 (704)
Q Consensus 360 ~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (704)
|+++.|+.++.+++..++..|+++|.|++. +++.+..+++.|+++
T Consensus 358 g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~--------------------------------- 404 (510)
T 3ul1_B 358 GLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIE--------------------------------- 404 (510)
T ss_dssp THHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHH---------------------------------
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHH---------------------------------
Confidence 999999999999999999999999999985 566777888877754
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhccC-------CCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHh
Q 005282 438 HLLYLLRVADRAVKRRVTLALAHLCA-------PDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLA 503 (704)
Q Consensus 438 ~L~~ll~~~~~~v~~~a~~~L~~l~~-------~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~ 503 (704)
+|+.++.+.++.++..++++|.++.. .+..+..+.+.||++.|..+..+++.++...|...|...-
T Consensus 405 ~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf 477 (510)
T 3ul1_B 405 PLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 477 (510)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 47778899999999999999999842 1223355678899999999988999999999988887654
No 2
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=1.8e-37 Score=337.84 Aligned_cols=387 Identities=20% Similarity=0.286 Sum_probs=334.7
Q ss_pred HHHHHHHHHHHHhhc---ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHH
Q 005282 66 AAAKTASHALVEFAK---NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVD 141 (704)
Q Consensus 66 ~~~~~a~~~L~~l~~---~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~ 141 (704)
..+..|+..+..+.. +|. .+.+++.|+||.|+++|...+. ++++..|+|+|+|++ ++++.+..+++
T Consensus 91 ~~q~~a~~~~rklLs~~~~~~-i~~ii~~G~ip~Lv~lL~~~~~---------~~~q~~Aa~aL~nia~~~~~~~~~vv~ 160 (529)
T 3tpo_A 91 ESQLQATQAARKLLSREKQPP-IDNIIRAGLIPKFVSFLGKTDC---------SPIQFESAWALTNIASGTSEQTKAVVD 160 (529)
T ss_dssp HHHHHHHHHHHHHHTSSSCCC-HHHHHHTTHHHHHHHHHTCTTC---------HHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCch-HHHHHHCCCHHHHHHHHcCCCC---------HHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345566666655432 344 4677899999999999987653 589999999999999 78889999999
Q ss_pred cCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCC-----HHHHHHHHHH
Q 005282 142 TGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD-----VKVQRAAAGA 216 (704)
Q Consensus 142 ~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-----~~~~~~a~~~ 216 (704)
.|++|.|+.+|.+++. ++++.|+|+|+|++.+++..+..+...|++++|+.++..++ ..++..++++
T Consensus 161 ~Gaip~Lv~LL~s~~~--------~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~ 232 (529)
T 3tpo_A 161 GGAIPAFISLLASPHA--------HISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT 232 (529)
T ss_dssp TTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHH
Confidence 9999999999998776 99999999999999989999999999999999999998654 4678899999
Q ss_pred HHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHH
Q 005282 217 LRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKRE 296 (704)
Q Consensus 217 L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~ 296 (704)
+.+++.+...........+++|.|+.++.+++++++..++|+|.+++..++.....+...|+++.|+.+|.+++..++..
T Consensus 233 L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~ 312 (529)
T 3tpo_A 233 LSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 312 (529)
T ss_dssp HHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHH
T ss_pred HHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHH
Confidence 99999755555555555678999999999999999999999999999988888888889999999999999999999999
Q ss_pred HHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchh-hhHHhhCChHHHHHhhcCCChh
Q 005282 297 AALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQ-AGIAQDGGILPLLKLLDSKNGS 375 (704)
Q Consensus 297 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~L~~ll~~~~~~ 375 (704)
++.+|+|++.+++.....+.+.|+++.|+.++.++++.++..|+|+|+|++.+.... ..+.+.|+++.|+.++.+++..
T Consensus 313 a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~ 392 (529)
T 3tpo_A 313 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK 392 (529)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHH
T ss_pred HHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHH
Confidence 999999999888888888999999999999999999999999999999999876654 4567789999999999999999
Q ss_pred HHHHHHHHHHHccc--CCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHH
Q 005282 376 LQHNAAFALYGLAD--NEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRR 453 (704)
Q Consensus 376 v~~~a~~~L~~l~~--~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~ 453 (704)
++..|+++|+|++. +++....+++.|+++ +|+.++.+.++.++..
T Consensus 393 v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~---------------------------------~L~~LL~~~d~~i~~~ 439 (529)
T 3tpo_A 393 TQKAAAWAITNYTSGGTVEQIVYLVHCGIIE---------------------------------PLMNLLSAKDTKIIQV 439 (529)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHTTCHH---------------------------------HHHHGGGCSCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHCcCHH---------------------------------HHHHHhcCCCHHHHHH
Confidence 99999999999985 566778888877755 4677889999999999
Q ss_pred HHHHHHhccC-------CCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHh
Q 005282 454 VTLALAHLCA-------PDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLA 503 (704)
Q Consensus 454 a~~~L~~l~~-------~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~ 503 (704)
++++|.++.. .+..+..+.+.||++.|..|..+++.++...|...|...-
T Consensus 440 ~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf 496 (529)
T 3tpo_A 440 ILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 496 (529)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 9999999832 1223345678899999999999999999999988886653
No 3
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=1.1e-36 Score=334.57 Aligned_cols=417 Identities=17% Similarity=0.209 Sum_probs=342.1
Q ss_pred HHHHHHHHHHhhcC-hhHHHHHH-hCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCc
Q 005282 68 AKTASHALVEFAKN-EEIVSLIV-DNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGAL 145 (704)
Q Consensus 68 ~~~a~~~L~~l~~~-~~~~~~l~-~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l 145 (704)
...|++++.++... ++....++ ..|+++.|+.++.+++. .++..|++++++++.++.+|+.+++.|+
T Consensus 264 ~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~----------~~q~~A~~al~~aa~~~~~R~~I~~~gv- 332 (810)
T 3now_A 264 KVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDE----------LQQRVACECLIAASSKKDKAKALCEQGV- 332 (810)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCH----------HHHHHHHHHHHHHTTSHHHHHTTHHHHH-
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCH----------HHHHHHHHHHHHHcCCcHHHHHHHHcCc-
Confidence 57889999999884 67777776 77999999999999865 8999999999999988999999999986
Q ss_pred HHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcCh-hhhhhhhccCC----cHHHHHHhcCC--CHHHHHHHHHHHH
Q 005282 146 PHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENA-NIKTRVRVEDG----IPPLVELLKFV--DVKVQRAAAGALR 218 (704)
Q Consensus 146 ~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~----i~~L~~ll~~~--~~~~~~~a~~~L~ 218 (704)
+.|..++++.+. .++..|+++|+++..... +.....+..|. ++.++++|.++ +++++..|+++|.
T Consensus 333 ~~L~~Ll~s~~~--------~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLa 404 (810)
T 3now_A 333 DILKRLYHSKND--------GIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLA 404 (810)
T ss_dssp HHHHHHTTCSCH--------HHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHH
T ss_pred HHHHHHHcCCCH--------HHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 999999986543 889999999999974221 22223444454 55677888877 8999999999999
Q ss_pred HhccCCchhhHHhH-hcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh-----------------------------h
Q 005282 219 TLAFKNDENKKLIV-ECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSP-----------------------------S 268 (704)
Q Consensus 219 ~l~~~~~~~~~~~~-~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-----------------------------~ 268 (704)
+|+. .++.+..++ +.|++|.|+.+|+++++.++..++++|+||+.+.+ .
T Consensus 405 yLS~-~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~ 483 (810)
T 3now_A 405 YLTL-DAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDF 483 (810)
T ss_dssp HHTT-SHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHH
T ss_pred HHhC-CcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHH
Confidence 9997 677777766 67999999999999999999999999999997542 1
Q ss_pred hH---HHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 005282 269 IK---KEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGR 345 (704)
Q Consensus 269 ~~---~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 345 (704)
.. +.+++.|+++.|+.++.++++.++..|+|+|+|++. +++++..+++.|++++|+.++.++++..++.|+++|+|
T Consensus 484 v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~n 562 (810)
T 3now_A 484 INKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALAR 562 (810)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 22 678899999999999999999999999999999985 67789999999999999999999999999999999999
Q ss_pred hhcCCchhhhH---HhhCChHHHHHhhcCC-ChhHHHHHHHHHHHcccC-CchhhHHHhhCCccccccccccccc-----
Q 005282 346 LAQDTHNQAGI---AQDGGILPLLKLLDSK-NGSLQHNAAFALYGLADN-EDNVADLVRVGGVQKLQDGEFTVQP----- 415 (704)
Q Consensus 346 l~~~~~~~~~~---~~~~~~~~L~~ll~~~-~~~v~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~l~~~~~~~~~----- 415 (704)
++.+.+....+ ...+++++|+.+|+++ +...+..|+++|.||+.. ++++..++++|+++.|++.......
T Consensus 563 L~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~ 642 (810)
T 3now_A 563 IGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRA 642 (810)
T ss_dssp HHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHH
T ss_pred HhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHH
Confidence 99764433322 1246999999999865 334567899999999985 5778899999999998765443322
Q ss_pred chHHHHHHHHHHH--HH-hh-cchhHHHHHHHhhccHHHHHHHHHHHHhccC-CCccceeeec-CCcHHHHHHHHhhcch
Q 005282 416 TKDCVARTLKRLE--EK-VH-GRVLNHLLYLLRVADRAVKRRVTLALAHLCA-PDDCKTIFID-NNGLELLLGLLESTSV 489 (704)
Q Consensus 416 ~~~~~~~~~~~~~--~~-~~-~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~l~~-~~~i~~L~~ll~~~~~ 489 (704)
..+++++.....+ .. +. .+.++.|+.++.+++..++..|+|+|++++. ++.....+.+ .||++.|++++.+++.
T Consensus 643 A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~ 722 (810)
T 3now_A 643 AAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSP 722 (810)
T ss_dssp HHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSH
T ss_pred HHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCH
Confidence 3344554432222 11 22 5789999999999999999999999999977 5555555666 8999999999999999
Q ss_pred hhhhhHHHHHHHHhhh
Q 005282 490 KQREESSVALYKLATK 505 (704)
Q Consensus 490 ~~~~~a~~~L~~L~~~ 505 (704)
.+|..|+++|.|++..
T Consensus 723 ~vq~~A~~aL~NL~~~ 738 (810)
T 3now_A 723 AVQHRGIVIILNMINA 738 (810)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999999874
No 4
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=1.1e-35 Score=325.23 Aligned_cols=403 Identities=20% Similarity=0.275 Sum_probs=347.4
Q ss_pred HHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhc-Ch-hHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHH
Q 005282 47 IRAQIDILNSKFSSDETDRAAAKTASHALVEFAK-NE-EIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAF 124 (704)
Q Consensus 47 ~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~-~~-~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~ 124 (704)
++.++..| .+ ++...+..|++.|.++.. ++ +....+++.|++|.|+++|.+++. +.++..|++
T Consensus 76 l~~lv~~L----~s--~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~---------~~v~~~A~~ 140 (528)
T 4b8j_A 76 LPAMIGGV----YS--DDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDF---------PQLQFEAAW 140 (528)
T ss_dssp HHHHHHHH----TS--SCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTC---------HHHHHHHHH
T ss_pred HHHHHHHH----cC--CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCC---------HHHHHHHHH
Confidence 55555554 22 345578899999999865 33 566788899999999999998752 489999999
Q ss_pred HHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHh-
Q 005282 125 ALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELL- 202 (704)
Q Consensus 125 ~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll- 202 (704)
+|++++ ++++.+..+.+.|+++.|+.+|.+.+. .++..|+++|++++.+++..+..+...|+++.|+.++
T Consensus 141 ~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~--------~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~ 212 (528)
T 4b8j_A 141 ALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSD--------DVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLN 212 (528)
T ss_dssp HHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCC
T ss_pred HHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCH--------HHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHh
Confidence 999999 679999999999999999999998654 9999999999999988888899999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHH
Q 005282 203 KFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPV 282 (704)
Q Consensus 203 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L 282 (704)
.+.++.++..++++|.+++.+.+. .......++++.|+.++.++++.++..++++|++++...+...+.+...|+++.|
T Consensus 213 ~~~~~~v~~~a~~~L~~L~~~~~~-~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~L 291 (528)
T 4b8j_A 213 EHTKLSMLRNATWTLSNFCRGKPQ-PSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL 291 (528)
T ss_dssp TTCCHHHHHHHHHHHHHHHCSSSC-CCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCCC-CcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHH
Confidence 578999999999999999975433 3344568899999999999999999999999999998877777888899999999
Q ss_pred HHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCC-CHHHHHHHHHHHHHhhcCCch-hhhHHhhC
Q 005282 283 IGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSP-DSQLKEMSAFALGRLAQDTHN-QAGIAQDG 360 (704)
Q Consensus 283 ~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~ 360 (704)
+.+|.++++.++..|+++|++++.+++.....+.+.|+++.|+.++.++ ++.++..|+++|+|++.+... ...+...|
T Consensus 292 v~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~ 371 (528)
T 4b8j_A 292 VELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAG 371 (528)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred HHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCC
Confidence 9999999999999999999999987777788888999999999999998 999999999999999986544 45577789
Q ss_pred ChHHHHHhhcCCChhHHHHHHHHHHHccc--CCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHH
Q 005282 361 GILPLLKLLDSKNGSLQHNAAFALYGLAD--NEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNH 438 (704)
Q Consensus 361 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (704)
+++.|+.++.++++.++..|+++|.+++. +++....+++.|++ +.
T Consensus 372 ~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i---------------------------------~~ 418 (528)
T 4b8j_A 372 IIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCI---------------------------------KP 418 (528)
T ss_dssp CHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCH---------------------------------HH
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCH---------------------------------HH
Confidence 99999999999999999999999999986 46677777776654 45
Q ss_pred HHHHHhhccHHHHHHHHHHHHhccCCC------------ccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282 439 LLYLLRVADRAVKRRVTLALAHLCAPD------------DCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKA 506 (704)
Q Consensus 439 L~~ll~~~~~~v~~~a~~~L~~l~~~~------------~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 506 (704)
|+.++..+++.++..++++|.+++... .....+.+.||++.|..+..+.+++++..|..+|.++....
T Consensus 419 L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e 498 (528)
T 4b8j_A 419 LCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDE 498 (528)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC--
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence 777888999999999999999995422 24566778899999999999999999999999999887643
No 5
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=8.3e-36 Score=310.75 Aligned_cols=362 Identities=18% Similarity=0.229 Sum_probs=300.3
Q ss_pred HHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCC--CCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcCCc-
Q 005282 70 TASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTN--AQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTGAL- 145 (704)
Q Consensus 70 ~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~--~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l- 145 (704)
+.++.|..++.+++.+..++++|++|.|+++|+..+.... .+-.-+++++.+|+|+|.||+ +.|+..+...+.|++
T Consensus 48 ~~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~ 127 (458)
T 3nmz_A 48 DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLH 127 (458)
T ss_dssp HHHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHH
Confidence 3789999999999999999999999999999997532000 000014699999999999999 888888888888888
Q ss_pred ---------HHHHHHHhhccCCCCC------cchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcC------
Q 005282 146 ---------PHLVSLLKQYKNGGNS------RALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKF------ 204 (704)
Q Consensus 146 ---------~~L~~lL~~~~~~~~~------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~------ 204 (704)
+.+++++.+...+... .+....+-+|+|+|.|++. ++++|..+.+.|++++|+.++..
T Consensus 128 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~ 206 (458)
T 3nmz_A 128 LLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYG 206 (458)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHST
T ss_pred HHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccc
Confidence 6677777765311110 0111233499999999986 58899999999999999999952
Q ss_pred -----CCHHHHHHHHHHHHHhccCCchhhHHhHh-cCChHHHHHhhcCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHHcC
Q 005282 205 -----VDVKVQRAAAGALRTLAFKNDENKKLIVE-CNALPTLVLMLRSEDASVHFEAVGVIGNLVHS-SPSIKKEVILAG 277 (704)
Q Consensus 205 -----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~ 277 (704)
.++.++..|+++|.||+.+++.++..+.. .|.+|.|+.+|.+++++++..|+++|.||+.. ++..+..+.+.|
T Consensus 207 ~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~G 286 (458)
T 3nmz_A 207 LTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVG 286 (458)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTT
T ss_pred cccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcC
Confidence 34789999999999999877667777764 45599999999999999999999999999975 567888899999
Q ss_pred CHHHHHHHh-cCCChhHHHHHHHHHHHHhccCCcchHHHH-hcCChHHHHHhhCCCCH----HHHHHHHHHHHHhhc---
Q 005282 278 ALQPVIGLL-SSSCSESKREAALLLGQFAAADSNSKVHIV-QRGAVRPLIEMLQSPDS----QLKEMSAFALGRLAQ--- 348 (704)
Q Consensus 278 ~l~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~L~~ll~~~~~----~v~~~a~~~L~~l~~--- 348 (704)
+++.|+.+| .+.+..+++.++.+|+|++.+.++++..+. ..|+++.|+.++.+++. ++++.|+++|.|++.
T Consensus 287 aI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a 366 (458)
T 3nmz_A 287 SVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIA 366 (458)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhccc
Confidence 999999975 566788999999999999975666666676 78999999999987643 589999999999995
Q ss_pred -CCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcc-cCCchhhHHHhhCCcccccccccccccchHHHHHHHHH
Q 005282 349 -DTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLA-DNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKR 426 (704)
Q Consensus 349 -~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~-~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~ 426 (704)
+++++..+.+.|+++.|+.+|.+++..+++.|+++|.|++ .+++++..+++.|+++.
T Consensus 367 ~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~--------------------- 425 (458)
T 3nmz_A 367 TNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSM--------------------- 425 (458)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHH---------------------
T ss_pred CCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHH---------------------
Confidence 6677778889999999999999999999999999999999 58889999999887655
Q ss_pred HHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCC
Q 005282 427 LEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPD 465 (704)
Q Consensus 427 ~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 465 (704)
|+.++.++++.+++.|+++|.||+.+.
T Consensus 426 ------------Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 426 ------------LKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp ------------HHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred ------------HHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 566788899999999999999996644
No 6
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=2.2e-34 Score=314.84 Aligned_cols=404 Identities=20% Similarity=0.274 Sum_probs=345.8
Q ss_pred HHHhhhccCCchhhHHHHHHHHHHHHHhhcC--hhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHh
Q 005282 51 IDILNSKFSSDETDRAAAKTASHALVEFAKN--EEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGL 128 (704)
Q Consensus 51 ~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~ 128 (704)
++.+...+.++ +...+..|++.|.++... ......+++.|+++.|+++|.+++ ++.++..|+++|++
T Consensus 89 i~~lv~~L~s~--~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~---------~~~v~~~A~~~L~~ 157 (530)
T 1wa5_B 89 LPQMTQQLNSD--DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQ---------PEMLQLEAAWALTN 157 (530)
T ss_dssp HHHHHHHHSCS--SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTS---------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC--CHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCC---------CHHHHHHHHHHHHH
Confidence 34444444333 355788999999998652 344567789999999999999873 24899999999999
Q ss_pred hc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCH
Q 005282 129 LA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDV 207 (704)
Q Consensus 129 l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~ 207 (704)
++ .+++.+..+.+.|+++.|+.+|.+.+. .++..|+++|++++.+++..+..+...|+++.|+.++.+.++
T Consensus 158 l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~--------~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~ 229 (530)
T 1wa5_B 158 IASGTSAQTKVVVDADAVPLFIQLLYTGSV--------EVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKP 229 (530)
T ss_dssp HTTSCHHHHHHHHHTTCHHHHHHHHHHCCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCH
T ss_pred HhCCCHHHHHHHHHCCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCH
Confidence 99 678899999999999999999997654 999999999999998888889989999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhc
Q 005282 208 KVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLS 287 (704)
Q Consensus 208 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~ 287 (704)
.++..++++|.+++.+...........++++.|+.++.++++.++..++++|++++...+.....+...|+++.|+.++.
T Consensus 230 ~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~ 309 (530)
T 1wa5_B 230 SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS 309 (530)
T ss_dssp HHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGG
T ss_pred HHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHC
Confidence 99999999999999755344445566889999999999999999999999999999887777888888999999999999
Q ss_pred CCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCch-hhhHHhhCChHHHH
Q 005282 288 SSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHN-QAGIAQDGGILPLL 366 (704)
Q Consensus 288 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~L~ 366 (704)
++++.++..|+++|++++.+++.....+.+.|+++.|+.++.++++.++..|+++|++++.+... ...++..|+++.|+
T Consensus 310 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~ 389 (530)
T 1wa5_B 310 HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLV 389 (530)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHH
T ss_pred CCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHH
Confidence 99999999999999999987777777788899999999999999999999999999999976543 45567789999999
Q ss_pred HhhcCCChhHHHHHHHHHHHccc--CC--chhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHH
Q 005282 367 KLLDSKNGSLQHNAAFALYGLAD--NE--DNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYL 442 (704)
Q Consensus 367 ~ll~~~~~~v~~~a~~~L~~l~~--~~--~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l 442 (704)
.++.++++.++..|+++|.+++. .+ +....+++.|+ ++.|+.+
T Consensus 390 ~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~---------------------------------l~~L~~l 436 (530)
T 1wa5_B 390 KLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGC---------------------------------IKPLCDL 436 (530)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTC---------------------------------HHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCC---------------------------------HHHHHHH
Confidence 99999999999999999999985 33 56666666555 4557778
Q ss_pred HhhccHHHHHHHHHHHHhccCC------------CccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282 443 LRVADRAVKRRVTLALAHLCAP------------DDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKA 506 (704)
Q Consensus 443 l~~~~~~v~~~a~~~L~~l~~~------------~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 506 (704)
+...++.++..++++|.+++.. ......+.+.||++.|..+..+++++++..|..+|.++....
T Consensus 437 l~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~ 512 (530)
T 1wa5_B 437 LEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEE 512 (530)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSC
T ss_pred HhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence 8889999999999999999542 123455678899999999999999999999999999887643
No 7
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=1.9e-35 Score=324.75 Aligned_cols=436 Identities=16% Similarity=0.168 Sum_probs=346.0
Q ss_pred HHHHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhh
Q 005282 50 QIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLL 129 (704)
Q Consensus 50 l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l 129 (704)
.++.+..++++ ++...+..|++++.+++.++..++.+++.|+ +.|+.++++.+. .++..|+.+|+++
T Consensus 291 ~v~~li~Ll~s--~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv-~~L~~Ll~s~~~----------~vr~~Al~~L~kl 357 (810)
T 3now_A 291 ILQMILAMATT--DDELQQRVACECLIAASSKKDKAKALCEQGV-DILKRLYHSKND----------GIRVRALVGLCKL 357 (810)
T ss_dssp HHHHHHHHHHS--SCHHHHHHHHHHHHHHTTSHHHHHTTHHHHH-HHHHHHTTCSCH----------HHHHHHHHHHHHH
T ss_pred hHHHHHHHhCC--CCHHHHHHHHHHHHHHcCCcHHHHHHHHcCc-HHHHHHHcCCCH----------HHHHHHHHHHHHh
Confidence 33444444433 3455678999999999999999999999885 999999997654 8999999999999
Q ss_pred cC-Ch-hhHHHHHHcCC----cHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhh-ccCCcHHHHHHh
Q 005282 130 AV-KP-EHQQIIVDTGA----LPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVR-VEDGIPPLVELL 202 (704)
Q Consensus 130 ~~-~~-~~~~~~~~~g~----l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~L~~ll 202 (704)
+. .. +.....++.|. ++.+.++|.++..+ .+++..++|+|++++. .+..+..++ +.|++|.|+.++
T Consensus 358 ~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d------~~v~~~AveaLayLS~-~~~vk~~lv~d~g~Ip~LV~LL 430 (810)
T 3now_A 358 GSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKD------KDIRRWAADGLAYLTL-DAECKEKLIEDKASIHALMDLA 430 (810)
T ss_dssp HTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCC------SSHHHHHHHHHHHHTT-SHHHHHHHHHCHHHHHHHHHHH
T ss_pred ccccccCccccchhhccHHHHHHHHHHHhcCCCCC------HHHHHHHHHHHHHHhC-CcHHHHHHHHccchHHHHHHHh
Confidence 83 21 22222233343 56677787776211 2899999999999997 455555555 579999999999
Q ss_pred cCCCHHHHHHHHHHHHHhccCCch-----------------------------hh---HHhHhcCChHHHHHhhcCCCHH
Q 005282 203 KFVDVKVQRAAAGALRTLAFKNDE-----------------------------NK---KLIVECNALPTLVLMLRSEDAS 250 (704)
Q Consensus 203 ~~~~~~~~~~a~~~L~~l~~~~~~-----------------------------~~---~~~~~~~~i~~L~~lL~~~~~~ 250 (704)
+++++.++..++++|.|++.+.+. .+ +.+++.|++|.|+.++.++++.
T Consensus 431 ~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~ 510 (810)
T 3now_A 431 RGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHN 510 (810)
T ss_dssp HTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHH
T ss_pred CCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHH
Confidence 999999999999999999975421 12 5678999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHH--HHhcCChHHHHHhh
Q 005282 251 VHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVH--IVQRGAVRPLIEML 328 (704)
Q Consensus 251 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~~~~i~~L~~ll 328 (704)
+++.|+|+|+|++. ++..+..+++.|+++.|+.+|.++++..++.|+++|.|++...+..... ....+++++|+.+|
T Consensus 511 vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL 589 (810)
T 3now_A 511 SQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLL 589 (810)
T ss_dssp HHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTT
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHh
Confidence 99999999999995 4778999999999999999999999999999999999998654332110 01146999999999
Q ss_pred CCC-CHHHHHHHHHHHHHhhcCC-chhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHHHh-hCCccc
Q 005282 329 QSP-DSQLKEMSAFALGRLAQDT-HNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVR-VGGVQK 405 (704)
Q Consensus 329 ~~~-~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~-~g~i~~ 405 (704)
.++ +...+..|+++|.||+.++ +.+..+++.|+++.|+.++.++++.++..|+++|+|++.+++.+..++. .|+++.
T Consensus 590 ~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~ 669 (810)
T 3now_A 590 QQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKF 669 (810)
T ss_dssp STTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHH
Confidence 865 4445678999999999885 5677889999999999999999999999999999999999988888885 678887
Q ss_pred cccccccccc-chHHHHHHHHHHH--------HHhh-cchhHHHHHHHhhccHHHHHHHHHHHHhccC-CCccceeeecC
Q 005282 406 LQDGEFTVQP-TKDCVARTLKRLE--------EKVH-GRVLNHLLYLLRVADRAVKRRVTLALAHLCA-PDDCKTIFIDN 474 (704)
Q Consensus 406 l~~~~~~~~~-~~~~~~~~~~~~~--------~~~~-~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~l~~~ 474 (704)
|+........ .....+..+.++. ..+. .+.+++|+.++.+++..++..|+|+|.|++. +++....+.+.
T Consensus 670 Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~ 749 (810)
T 3now_A 670 LALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFET 749 (810)
T ss_dssp HHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTS
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHC
Confidence 7654433322 1222223332222 2234 6899999999999999999999999999965 45667888899
Q ss_pred CcHHHHHHHHhhc---chhhhhhHHHHHHHHhhhc
Q 005282 475 NGLELLLGLLEST---SVKQREESSVALYKLATKA 506 (704)
Q Consensus 475 ~~i~~L~~ll~~~---~~~~~~~a~~~L~~L~~~~ 506 (704)
||++.|+.+++.+ ++.+...|..+|.++....
T Consensus 750 G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g 784 (810)
T 3now_A 750 DIMELLSGLGQLPDDTRAKAREVATQCLAAAERYR 784 (810)
T ss_dssp THHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCC
Confidence 9999999999654 7889999999999998766
No 8
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=2.5e-34 Score=311.04 Aligned_cols=365 Identities=22% Similarity=0.307 Sum_probs=312.5
Q ss_pred HHHhhhccCCchhhHHHHHHHHHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhh
Q 005282 51 IDILNSKFSSDETDRAAAKTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLL 129 (704)
Q Consensus 51 ~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l 129 (704)
++.|+.+++.. +++.++.+|+|+|.+++. ++++++.+++.|+||.|+.+|.+++. ++++.|+|+|+||
T Consensus 102 ip~LV~lL~~~-~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~----------~v~e~A~~aL~nL 170 (510)
T 3ul1_B 102 IPKFVSFLGKT-DCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA----------HISEQAVWALGNI 170 (510)
T ss_dssp HHHHHHHTTCT-TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCC-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCH----------HHHHHHHHHHHHH
Confidence 45555655433 345578999999999987 68999999999999999999998865 9999999999999
Q ss_pred c-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHH
Q 005282 130 A-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVK 208 (704)
Q Consensus 130 ~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~ 208 (704)
+ +++++|..+.+.|+++.|+.++...+.... ...+++.++|++.+++.............+++|.|+.++.+++++
T Consensus 171 a~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~---~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~ 247 (510)
T 3ul1_B 171 AGDGSAFRDLVIKHGAIDPLLALLAVPDLSTL---ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPE 247 (510)
T ss_dssp HTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGS---CHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHH
T ss_pred HhCCHHHHHHHHHcCChHHHHHHHHhccchhh---hHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHH
Confidence 9 789999999999999999999987543211 126788999999999976655556566678899999999999999
Q ss_pred HHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcC
Q 005282 209 VQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSS 288 (704)
Q Consensus 209 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~ 288 (704)
++..++++|++|+.+.++....+.+.|+++.|+.+|.++++.++..++++|+|++..++.....+.+.|+++.|+.++.+
T Consensus 248 v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~ 327 (510)
T 3ul1_B 248 VLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN 327 (510)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTC
T ss_pred HHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcC
Confidence 99999999999998777777888899999999999999999999999999999999988999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC--chhhhHHhhCChHHHH
Q 005282 289 SCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDT--HNQAGIAQDGGILPLL 366 (704)
Q Consensus 289 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~L~ 366 (704)
++..++..|+++|+|++.+++..+..+.+.|+++.|+.++.+++.+++..|+++|+|++.+. +....+++.|++++|+
T Consensus 328 ~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~ 407 (510)
T 3ul1_B 328 PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLM 407 (510)
T ss_dssp SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHH
Confidence 99999999999999999888888889999999999999999999999999999999999743 4456688999999999
Q ss_pred HhhcCCChhHHHHHHHHHHHcccCC-------chhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHH
Q 005282 367 KLLDSKNGSLQHNAAFALYGLADNE-------DNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHL 439 (704)
Q Consensus 367 ~ll~~~~~~v~~~a~~~L~~l~~~~-------~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 439 (704)
++|.+.+++++..++.+|.++.... .....+.+.||+ +.+
T Consensus 408 ~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl---------------------------------~~i 454 (510)
T 3ul1_B 408 NLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGL---------------------------------DKI 454 (510)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHH---------------------------------HHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcH---------------------------------HHH
Confidence 9999999999999999999986311 112233344443 445
Q ss_pred HHHHhhccHHHHHHHHHHHHhcc
Q 005282 440 LYLLRVADRAVKRRVTLALAHLC 462 (704)
Q Consensus 440 ~~ll~~~~~~v~~~a~~~L~~l~ 462 (704)
-.+..+++.++...|...|-.+-
T Consensus 455 e~Lq~~~n~~i~~~A~~iie~yf 477 (510)
T 3ul1_B 455 EALQRHENESVYKASLNLIEKYF 477 (510)
T ss_dssp HHGGGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHcCCCHHHHHHHHHHHHHHC
Confidence 55667788999999999997763
No 9
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=1.9e-34 Score=306.63 Aligned_cols=363 Identities=21% Similarity=0.229 Sum_probs=305.3
Q ss_pred hCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHH
Q 005282 90 DNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVI 168 (704)
Q Consensus 90 ~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~ 168 (704)
..+.++.|+++|.+.+. +++..|+++|.+++ .+++++..+.+.|+||.|+++|++.+. +++
T Consensus 46 ~~~~i~~LV~~L~s~~~----------~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~--------~vq 107 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRLD----------AVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKK--------EVH 107 (584)
T ss_dssp CCCCHHHHHHHTTCSCH----------HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSH--------HHH
T ss_pred ccccHHHHHHHHCCCCH----------HHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCH--------HHH
Confidence 57889999999998754 99999999999999 799999999999999999999998765 999
Q ss_pred HHHHHHHHHhhhc-ChhhhhhhhccCCcHHHHHHhcC-CCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc-
Q 005282 169 RRAADAITNLAHE-NANIKTRVRVEDGIPPLVELLKF-VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR- 245 (704)
Q Consensus 169 ~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~- 245 (704)
+.|+++|.||+.. +++++..+.+.|+++.|+.+|++ .+.++++.++++|++|+. +++++..+++ ++++.|++++.
T Consensus 108 ~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~ 185 (584)
T 3l6x_A 108 LGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVII 185 (584)
T ss_dssp HHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhc
Confidence 9999999999974 68899999999999999999997 688999999999999997 7888888885 57999999872
Q ss_pred -----------------CCCHHHHHHHHHHHHHHhcCChhhHHHHHHc-CCHHHHHHHhcC------CChhHHHHHHHHH
Q 005282 246 -----------------SEDASVHFEAVGVIGNLVHSSPSIKKEVILA-GALQPVIGLLSS------SCSESKREAALLL 301 (704)
Q Consensus 246 -----------------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~l~~L~~ll~~------~~~~~~~~a~~~L 301 (704)
..++.+++.|+++|.||+..+++.++.+.+. |+++.|+.++.+ .+....+.|+++|
T Consensus 186 p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL 265 (584)
T 3l6x_A 186 PHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLL 265 (584)
T ss_dssp HHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHH
T ss_pred ccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHH
Confidence 2367999999999999998888878888875 556799999874 4567899999999
Q ss_pred HHHhccCC-------------------------cchHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCc----
Q 005282 302 GQFAAADS-------------------------NSKVHIVQRGAVRPLIEMLQ-SPDSQLKEMSAFALGRLAQDTH---- 351 (704)
Q Consensus 302 ~~l~~~~~-------------------------~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~---- 351 (704)
.|++.... .....+.+.++++.|+.+++ +.++.+++.|+++|+||+.+..
T Consensus 266 ~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~ 345 (584)
T 3l6x_A 266 RNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGR 345 (584)
T ss_dssp HHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHH
T ss_pred HHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccH
Confidence 99985410 11112223355678889996 5689999999999999997652
Q ss_pred -hhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHH
Q 005282 352 -NQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEK 430 (704)
Q Consensus 352 -~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~ 430 (704)
.+..+.+.++++.|+++|.+++..+++.|+++|+||+.++.++..| ..|+++
T Consensus 346 ~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip-------------------------- 398 (584)
T 3l6x_A 346 YIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-GKHAIP-------------------------- 398 (584)
T ss_dssp HHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHH--------------------------
T ss_pred HHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHH--------------------------
Confidence 2334456789999999999999999999999999999988777655 555544
Q ss_pred hhcchhHHHHHHHhhc--------cHHHHHHHHHHHHhcc-CCCccceeeecCCcHHHHHHHHhhc--chhhhhhHHHHH
Q 005282 431 VHGRVLNHLLYLLRVA--------DRAVKRRVTLALAHLC-APDDCKTIFIDNNGLELLLGLLEST--SVKQREESSVAL 499 (704)
Q Consensus 431 ~~~~~~~~L~~ll~~~--------~~~v~~~a~~~L~~l~-~~~~~~~~l~~~~~i~~L~~ll~~~--~~~~~~~a~~~L 499 (704)
.|+.+|..+ ..++...|+++|.|++ .++.++..+.+.|||+.|+.++.++ .+.+++.|+++|
T Consensus 399 -------~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL 471 (584)
T 3l6x_A 399 -------NLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVL 471 (584)
T ss_dssp -------HHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHH
T ss_pred -------HHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHH
Confidence 456666554 4678899999999994 5778888889999999999999975 889999999999
Q ss_pred HHHhhhc
Q 005282 500 YKLATKA 506 (704)
Q Consensus 500 ~~L~~~~ 506 (704)
++|..+.
T Consensus 472 ~nl~~~~ 478 (584)
T 3l6x_A 472 QTIWGYK 478 (584)
T ss_dssp HHHHTSH
T ss_pred HHHHcCH
Confidence 9998766
No 10
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=7.7e-35 Score=319.40 Aligned_cols=418 Identities=20% Similarity=0.223 Sum_probs=356.4
Q ss_pred hHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHc
Q 005282 64 DRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDT 142 (704)
Q Consensus 64 ~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~ 142 (704)
+...+..++.+|.+++.+++++..+.+.|+++.|+++|++++. +++..|+++|.+++ .++..+..+.+.
T Consensus 73 ~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~----------~v~~~a~~~L~~l~~~~~~~~~~i~~~ 142 (529)
T 1jdh_A 73 DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD----------SVLFYAITTLHNLLLHQEGAKMAVRLA 142 (529)
T ss_dssp CHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCH----------HHHHHHHHHHHHHHHHCTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCH----------HHHHHHHHHHHHHhcCCcchHHHHHHc
Confidence 4557899999999999998899999999999999999998765 99999999999999 667888899999
Q ss_pred CCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCC-HHHHHHHHHHHHHhc
Q 005282 143 GALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD-VKVQRAAAGALRTLA 221 (704)
Q Consensus 143 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~~~~~a~~~L~~l~ 221 (704)
|+++.|+.++.+.+. .++..++.+|.+++..+++.+..+...|+++.|+.++++++ ...+..++.+|++++
T Consensus 143 g~i~~L~~ll~~~~~--------~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~ 214 (529)
T 1jdh_A 143 GGLQKMVALLNKTNV--------KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS 214 (529)
T ss_dssp THHHHHHHGGGCCCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHhcCCH--------HHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHh
Confidence 999999999987543 88999999999999888899999999999999999999654 567778899999999
Q ss_pred cCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHH
Q 005282 222 FKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLL 301 (704)
Q Consensus 222 ~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L 301 (704)
. ++.++..+.+.|+++.|+.++.++++.++..++++|.+++...+... ...++++.|+.++.+++++++..++++|
T Consensus 215 ~-~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L 290 (529)
T 1jdh_A 215 V-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGIL 290 (529)
T ss_dssp T-STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred c-CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 6 78889999999999999999999999999999999999997643321 1236799999999999999999999999
Q ss_pred HHHhccCCcchHHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCCc----hhhhHHhhCChHHHHHhhcCCC-h
Q 005282 302 GQFAAADSNSKVHIVQRGAVRPLIEMLQS--PDSQLKEMSAFALGRLAQDTH----NQAGIAQDGGILPLLKLLDSKN-G 374 (704)
Q Consensus 302 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~----~~~~~~~~~~~~~L~~ll~~~~-~ 374 (704)
++++..+++.+..+.+.|+++.|+.++.+ .++.++..++++|+|++.+.. .+..+...|+++.|++++.+++ +
T Consensus 291 ~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~ 370 (529)
T 1jdh_A 291 SNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW 370 (529)
T ss_dssp HHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCH
T ss_pred HHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccch
Confidence 99998777788889999999999999975 347999999999999997643 3567888899999999998876 5
Q ss_pred hHHHHHHHHHHHcccCCchhhHHHhhCCcccccccccccccc----h-------------------HHHHHHHHHH----
Q 005282 375 SLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPT----K-------------------DCVARTLKRL---- 427 (704)
Q Consensus 375 ~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~----~-------------------~~~~~~~~~~---- 427 (704)
.++..++++|+|++.+++++..+.+.|+++.|++........ . ......+..+
T Consensus 371 ~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~ 450 (529)
T 1jdh_A 371 PLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV 450 (529)
T ss_dssp HHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCc
Confidence 999999999999999888889999999998886532211100 0 0111111111
Q ss_pred ---HHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHh
Q 005282 428 ---EEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLA 503 (704)
Q Consensus 428 ---~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~ 503 (704)
......+.++.|+.++.++++.++..++++|.+++.++..+..+.+.||++.|.+++.+++++++..|.++|.+|+
T Consensus 451 ~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l~ 529 (529)
T 1jdh_A 451 HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529 (529)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred hHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence 1123567889999999999999999999999999887777888889999999999999999999999999999874
No 11
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=5.5e-34 Score=310.29 Aligned_cols=364 Identities=23% Similarity=0.314 Sum_probs=313.2
Q ss_pred HHHhhhccCCchhhHHHHHHHHHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhh
Q 005282 51 IDILNSKFSSDETDRAAAKTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLL 129 (704)
Q Consensus 51 ~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l 129 (704)
++.|+.++... +++.++.+|+|+|.+++. +++.+..+++.|+||.|+.+|.+++. +++..|+|+|+||
T Consensus 121 ip~Lv~lL~~~-~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~----------~v~e~A~~aL~nL 189 (529)
T 3tpo_A 121 IPKFVSFLGKT-DCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA----------HISEQAVWALGNI 189 (529)
T ss_dssp HHHHHHHHTCT-TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCH----------HHHHHHHHHHHHH
Confidence 34455555432 345688999999999988 57888999999999999999999876 9999999999999
Q ss_pred c-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHH
Q 005282 130 A-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVK 208 (704)
Q Consensus 130 ~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~ 208 (704)
+ ++++++..+.+.|+++.|+.+|........ ...+++.++|++.+++.+...........+++|.|+.++.+++++
T Consensus 190 a~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~---~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~ 266 (529)
T 3tpo_A 190 AGAGSAFRDLVIKHGAIDPLLALLAVPDLSTL---ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPE 266 (529)
T ss_dssp HTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGS---CHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHH
T ss_pred hccCHHHHHHHHHcCCcHHHHHHHhccchhHh---HHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHH
Confidence 9 789999999999999999999987543211 126788999999999986666666666678999999999999999
Q ss_pred HHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcC
Q 005282 209 VQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSS 288 (704)
Q Consensus 209 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~ 288 (704)
++..++++|.+++.+.++....+...|+++.|+.+|.++++.++..++++|+|++.+++.....+.+.|+++.|+.++.+
T Consensus 267 v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~ 346 (529)
T 3tpo_A 267 VLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN 346 (529)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTC
T ss_pred HHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcC
Confidence 99999999999998777788888899999999999999999999999999999999888999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC--chhhhHHhhCChHHHH
Q 005282 289 SCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDT--HNQAGIAQDGGILPLL 366 (704)
Q Consensus 289 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~L~ 366 (704)
+++.++..|+|+|+|++.+++.....+.+.|+++.|+.++.+++.+++..|+++|+|++.+. +....+++.|++++|+
T Consensus 347 ~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~ 426 (529)
T 3tpo_A 347 PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLM 426 (529)
T ss_dssp SSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHH
Confidence 99999999999999999888888888999999999999999999999999999999999643 4456688999999999
Q ss_pred HhhcCCChhHHHHHHHHHHHcccC------C-chhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHH
Q 005282 367 KLLDSKNGSLQHNAAFALYGLADN------E-DNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHL 439 (704)
Q Consensus 367 ~ll~~~~~~v~~~a~~~L~~l~~~------~-~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 439 (704)
++|.+.+++++..++.+|.++... . .....+.+.||++.+
T Consensus 427 ~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~i--------------------------------- 473 (529)
T 3tpo_A 427 NLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKI--------------------------------- 473 (529)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHH---------------------------------
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHH---------------------------------
Confidence 999999999999999999998631 1 112345556665553
Q ss_pred HHHHhhccHHHHHHHHHHHHhc
Q 005282 440 LYLLRVADRAVKRRVTLALAHL 461 (704)
Q Consensus 440 ~~ll~~~~~~v~~~a~~~L~~l 461 (704)
-.+..+++.++...|...|-..
T Consensus 474 e~Lq~~~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 474 EALQRHENESVYKASLNLIEKY 495 (529)
T ss_dssp TGGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHH
Confidence 3455678889999998888665
No 12
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.6e-34 Score=321.10 Aligned_cols=421 Identities=19% Similarity=0.218 Sum_probs=359.3
Q ss_pred hHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHc
Q 005282 64 DRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDT 142 (704)
Q Consensus 64 ~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~ 142 (704)
+...+..|+.+|.+++.+++.+..+.+.|+++.|+++|++++. .++..|+++|.+++ ..+..+..+.+.
T Consensus 70 ~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~----------~v~~~A~~aL~nL~~~~~~~~~~v~~~ 139 (644)
T 2z6h_A 70 DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD----------SVLFYAITTLHNLLLHQEGAKMAVRLA 139 (644)
T ss_dssp CHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSH----------HHHHHHHHHHHHHHHHSTTHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCH----------HHHHHHHHHHHHHHhCcchhHHHHHHC
Confidence 4557889999999999998899999999999999999998765 99999999999999 667888889999
Q ss_pred CCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCC-HHHHHHHHHHHHHhc
Q 005282 143 GALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD-VKVQRAAAGALRTLA 221 (704)
Q Consensus 143 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~~~~~a~~~L~~l~ 221 (704)
|+++.|+.+|++.+. .++..++.+|.+++..+++.+..+...|+++.|+.++++.+ ..++..++.+|++++
T Consensus 140 g~i~~Lv~lL~~~~~--------~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs 211 (644)
T 2z6h_A 140 GGLQKMVALLNKTNV--------KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS 211 (644)
T ss_dssp THHHHHHHGGGCCCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred CChHHHHHHHCcCCH--------HHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHh
Confidence 999999999997643 78888889999999878889999999999999999999654 678899999999999
Q ss_pred cCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHH
Q 005282 222 FKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLL 301 (704)
Q Consensus 222 ~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L 301 (704)
. ++.++..+++.|+++.|+.++.+++..++..++++|.+++...+.. ....++++.|+.++.+.+++++..++++|
T Consensus 212 ~-~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL 287 (644)
T 2z6h_A 212 V-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGIL 287 (644)
T ss_dssp T-CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred c-CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 6 7889999999999999999999999999999999999999764331 11236799999999999999999999999
Q ss_pred HHHhccCCcchHHHHhcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhcCCc----hhhhHHhhCChHHHHHhhcCCC-h
Q 005282 302 GQFAAADSNSKVHIVQRGAVRPLIEMLQSP--DSQLKEMSAFALGRLAQDTH----NQAGIAQDGGILPLLKLLDSKN-G 374 (704)
Q Consensus 302 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~----~~~~~~~~~~~~~L~~ll~~~~-~ 374 (704)
.+++..++.++..+.+.|+++.|+.++.+. .+.++..|+++|+||+.... .+..+...|+++.|+++|.+.+ +
T Consensus 288 ~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~ 367 (644)
T 2z6h_A 288 SNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW 367 (644)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCH
T ss_pred HHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCch
Confidence 999987778888899999999999999863 37999999999999997532 3455778899999999998865 6
Q ss_pred hHHHHHHHHHHHcccCCchhhHHHhhCCccccccccccccc-----------------------chHHHHHHHHHH----
Q 005282 375 SLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQP-----------------------TKDCVARTLKRL---- 427 (704)
Q Consensus 375 ~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~-----------------------~~~~~~~~~~~~---- 427 (704)
.+++.++++|.|++.+++++..+.+.|+++.|++....... ........+..+
T Consensus 368 ~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~ 447 (644)
T 2z6h_A 368 PLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV 447 (644)
T ss_dssp HHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCH
Confidence 99999999999999988888999999999988753322100 011111222211
Q ss_pred ---HHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhh
Q 005282 428 ---EEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLAT 504 (704)
Q Consensus 428 ---~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~ 504 (704)
......+.++.|+.++.++++.++..|+++|.+++..++.+..+.+.||++.|.+++.+++++++..|+++|.+|+.
T Consensus 448 ~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~ 527 (644)
T 2z6h_A 448 HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSE 527 (644)
T ss_dssp HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 12225678999999999999999999999999998877788888899999999999999999999999999999987
Q ss_pred hc
Q 005282 505 KA 506 (704)
Q Consensus 505 ~~ 506 (704)
+.
T Consensus 528 ~~ 529 (644)
T 2z6h_A 528 DK 529 (644)
T ss_dssp TS
T ss_pred cC
Confidence 65
No 13
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=8.6e-35 Score=303.08 Aligned_cols=369 Identities=21% Similarity=0.228 Sum_probs=299.1
Q ss_pred CChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCC----CCcchhHH
Q 005282 92 GAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGG----NSRALSGV 167 (704)
Q Consensus 92 g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~----~~~~~~~~ 167 (704)
..++.|+..+.+.+. + ...+.|..+..+++.|..+++.|++|.|+++|+..+.+. ....++++
T Consensus 32 ~~~~~l~~~~~~~~~----------~---~~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~ 98 (458)
T 3nmz_A 32 EMVYSLLSMLGTHDK----------D---DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEA 98 (458)
T ss_dssp -------------CC----------H---HHHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHH
T ss_pred HHHHHHHHHhcCCCH----------H---HHHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHH
Confidence 346778888877654 3 378889999999999999999999999999999754310 01123499
Q ss_pred HHHHHHHHHHhhhcChhhhhhhhccCCc----------HHHHHHhcCCC--HH-----HHH-------HHHHHHHHhccC
Q 005282 168 IRRAADAITNLAHENANIKTRVRVEDGI----------PPLVELLKFVD--VK-----VQR-------AAAGALRTLAFK 223 (704)
Q Consensus 168 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i----------~~L~~ll~~~~--~~-----~~~-------~a~~~L~~l~~~ 223 (704)
+..|+|+|.|++.+.++......+.+++ +.+++++.+.+ .+ +++ .|+|+|.|++.
T Consensus 99 ~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~- 177 (458)
T 3nmz_A 99 RARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF- 177 (458)
T ss_dssp HHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcC-
Confidence 9999999999998888887777777777 55666676542 12 444 89999999986
Q ss_pred CchhhHHhHhcCChHHHHHhhcC-----------CCHHHHHHHHHHHHHHhcCChhhHHHHHH-cCCHHHHHHHhcCCCh
Q 005282 224 NDENKKLIVECNALPTLVLMLRS-----------EDASVHFEAVGVIGNLVHSSPSIKKEVIL-AGALQPVIGLLSSSCS 291 (704)
Q Consensus 224 ~~~~~~~~~~~~~i~~L~~lL~~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~ 291 (704)
++++|..+.+.|+++.|+.+|.. .++.+++.|+|+|.||+.+++..+..+.. .|+++.|+.+|.+++.
T Consensus 178 ~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~ 257 (458)
T 3nmz_A 178 DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESE 257 (458)
T ss_dssp SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCH
T ss_pred CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCH
Confidence 69999999999999999999952 34678999999999999887766666655 4569999999999999
Q ss_pred hHHHHHHHHHHHHhcc-CCcchHHHHhcCChHHHHHhh-CCCCHHHHHHHHHHHHHhhc-CCchhhhHH-hhCChHHHHH
Q 005282 292 ESKREAALLLGQFAAA-DSNSKVHIVQRGAVRPLIEML-QSPDSQLKEMSAFALGRLAQ-DTHNQAGIA-QDGGILPLLK 367 (704)
Q Consensus 292 ~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~-~~~~~~~L~~ 367 (704)
+++..|+++|+|++.. ++.++..+.+.|+++.|+.+| .+++..+++.|+.+|+||+. ..+++..+. ..|+++.|++
T Consensus 258 ~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~ 337 (458)
T 3nmz_A 258 DLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVG 337 (458)
T ss_dssp HHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHH
Confidence 9999999999999874 456788899999999999975 56788999999999999998 667788887 6899999999
Q ss_pred hhcCCCh----hHHHHHHHHHHHccc----CCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHH
Q 005282 368 LLDSKNG----SLQHNAAFALYGLAD----NEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHL 439 (704)
Q Consensus 368 ll~~~~~----~v~~~a~~~L~~l~~----~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 439 (704)
++.+++. ++++.|+++|.|++. +++++..+.+.|+++ .|
T Consensus 338 LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~---------------------------------~L 384 (458)
T 3nmz_A 338 TLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQ---------------------------------TL 384 (458)
T ss_dssp HTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH---------------------------------HH
T ss_pred HhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHH---------------------------------HH
Confidence 9987654 499999999999984 788888888877654 57
Q ss_pred HHHHhhccHHHHHHHHHHHHhcc-CCCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhcC
Q 005282 440 LYLLRVADRAVKRRVTLALAHLC-APDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKAT 507 (704)
Q Consensus 440 ~~ll~~~~~~v~~~a~~~L~~l~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~ 507 (704)
+.++.+++..+++.|+++|.|++ .+++++..+.+.|+++.|+.++.++++.++..|+++|.+|+.+.+
T Consensus 385 v~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 385 LQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp HHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 77888999999999999999997 577888888999999999999999999999999999999998653
No 14
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=3e-34 Score=305.34 Aligned_cols=360 Identities=19% Similarity=0.245 Sum_probs=302.5
Q ss_pred ChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHH
Q 005282 93 AVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRA 171 (704)
Q Consensus 93 ~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a 171 (704)
.+|.|+.+|++++. +++..|+++|.+++ .++..+..+.+.|++|.|+++|++++. +++..|
T Consensus 3 ~l~~lv~~L~s~~~----------~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~--------~~~~~A 64 (457)
T 1xm9_A 3 TIPKAVQYLSSQDE----------KYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQ--------NVQQAA 64 (457)
T ss_dssp CHHHHHHHHHSSCT----------HHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCH--------HHHHHH
T ss_pred CHHHHHHHHCCCCH----------HHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCH--------HHHHHH
Confidence 47999999999865 99999999999999 777788899999999999999997654 899999
Q ss_pred HHHHHHhhhcChhhhhhhhccCCcHHHHHHhc-CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhh------
Q 005282 172 ADAITNLAHENANIKTRVRVEDGIPPLVELLK-FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLML------ 244 (704)
Q Consensus 172 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL------ 244 (704)
+++|.|++.++++.+..+.+.|++|.|+++|+ ++++++++.++++|++|+.+ ++++..+++ |+++.|++++
T Consensus 65 ~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~ 142 (457)
T 1xm9_A 65 AGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSG 142 (457)
T ss_dssp HHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHT
T ss_pred HHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccc
Confidence 99999999877999999999999999999999 88999999999999999975 888998888 9999999999
Q ss_pred --cC--------CCHHHHHHHHHHHHHHhcCChhhHHHHHHc-CCHHHHHHHhcC------CChhHHHHHHHHHHHHhcc
Q 005282 245 --RS--------EDASVHFEAVGVIGNLVHSSPSIKKEVILA-GALQPVIGLLSS------SCSESKREAALLLGQFAAA 307 (704)
Q Consensus 245 --~~--------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~l~~L~~ll~~------~~~~~~~~a~~~L~~l~~~ 307 (704)
.+ .++.+++.|+|+|.|++.+ ++.+..+.+. |+++.|+.++.+ .+..+...++.+|.|++..
T Consensus 143 ~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~ 221 (457)
T 1xm9_A 143 WCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYR 221 (457)
T ss_dssp CC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTT
T ss_pred cccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccc
Confidence 32 3567788999999999977 7888888887 999999999975 4566788899999988621
Q ss_pred --------------------------------------------------CCcchHHHHhcCChHHHHHhhCC-CCHHHH
Q 005282 308 --------------------------------------------------DSNSKVHIVQRGAVRPLIEMLQS-PDSQLK 336 (704)
Q Consensus 308 --------------------------------------------------~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~ 336 (704)
.+.....+.+.|+++.|+.+|.+ .++.++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~ 301 (457)
T 1xm9_A 222 LDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATL 301 (457)
T ss_dssp HHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHH
T ss_pred hhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHH
Confidence 11222344556778999999975 568999
Q ss_pred HHHHHHHHHhhcCCchh------hhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHHHhhCCcccccccc
Q 005282 337 EMSAFALGRLAQDTHNQ------AGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGE 410 (704)
Q Consensus 337 ~~a~~~L~~l~~~~~~~------~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~ 410 (704)
+.|+|+|+|++.+.... ..+.+.|+++.|+++|.+++.++++.|+++|.|++.++++...+ ..|++
T Consensus 302 e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i-~~~~i------- 373 (457)
T 1xm9_A 302 EACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVM-GNQVF------- 373 (457)
T ss_dssp HHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHH-HHHTH-------
T ss_pred HHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHH-HHhhh-------
Confidence 99999999999875432 22335799999999999999999999999999999877665544 33444
Q ss_pred cccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhcc------HHHHHHHHHHHHhccC-CCccceeeecCCcHHHHHHH
Q 005282 411 FTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVAD------RAVKRRVTLALAHLCA-PDDCKTIFIDNNGLELLLGL 483 (704)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~------~~v~~~a~~~L~~l~~-~~~~~~~l~~~~~i~~L~~l 483 (704)
++|+.++..++ +++...++++|.++.. +++....+.+.||++.|+++
T Consensus 374 --------------------------~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L 427 (457)
T 1xm9_A 374 --------------------------PEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINL 427 (457)
T ss_dssp --------------------------HHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHH
T ss_pred --------------------------HHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHH
Confidence 45666666543 4788899999999954 66677778889999999999
Q ss_pred Hhhc-chhhhhhHHHHHHHHhhhcC
Q 005282 484 LEST-SVKQREESSVALYKLATKAT 507 (704)
Q Consensus 484 l~~~-~~~~~~~a~~~L~~L~~~~~ 507 (704)
+.++ ++.+++.|.+.|.++..+.+
T Consensus 428 ~~~~~~~~i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 428 CRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred HcCCCcHHHHHHHHHHHHHHHcchh
Confidence 9998 99999999999999887653
No 15
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=6.6e-34 Score=302.51 Aligned_cols=371 Identities=18% Similarity=0.238 Sum_probs=304.1
Q ss_pred HHHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHH
Q 005282 46 DIRAQIDILNSKFSSDETDRAAAKTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAF 124 (704)
Q Consensus 46 ~~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~ 124 (704)
.++.++..|.. .+..++.+|++.|.+++. +++++..+++.|+||.|+++|.+++. +++..|++
T Consensus 49 ~i~~LV~~L~s------~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~----------~vq~~Aa~ 112 (584)
T 3l6x_A 49 ELPEVIAMLGF------RLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKK----------EVHLGACG 112 (584)
T ss_dssp CHHHHHHHTTC------SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSH----------HHHHHHHH
T ss_pred cHHHHHHHHCC------CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCH----------HHHHHHHH
Confidence 36666666532 334578899999999997 78999999999999999999999865 99999999
Q ss_pred HHHhhcC--ChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHh
Q 005282 125 ALGLLAV--KPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELL 202 (704)
Q Consensus 125 ~L~~l~~--~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll 202 (704)
+|.||+. +++++..+.+.|+++.|+.+|++..+ .++++.++++|++|+. ++..+..+.. ++++.|++++
T Consensus 113 AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~-------~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL 183 (584)
T 3l6x_A 113 ALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARD-------MDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEV 183 (584)
T ss_dssp HHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCS-------HHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHT
T ss_pred HHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCC-------HHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHH
Confidence 9999994 59999999999999999999997533 2889999999999997 6778888885 6799999987
Q ss_pred c------------------CCCHHHHHHHHHHHHHhccCCchhhHHhHhc-CChHHHHHhhcC------CCHHHHHHHHH
Q 005282 203 K------------------FVDVKVQRAAAGALRTLAFKNDENKKLIVEC-NALPTLVLMLRS------EDASVHFEAVG 257 (704)
Q Consensus 203 ~------------------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~lL~~------~~~~v~~~a~~ 257 (704)
. ..++.+++.|+++|.||+..+++.+..+.+. |+++.|+.++++ .+...++.|++
T Consensus 184 ~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~ 263 (584)
T 3l6x_A 184 IIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVC 263 (584)
T ss_dssp HHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHH
T ss_pred hcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHH
Confidence 2 2367999999999999998777778888875 456799999874 56789999999
Q ss_pred HHHHHhcCChh-------------------------hHHHHHHcCCHHHHHHHhc-CCChhHHHHHHHHHHHHhccCC--
Q 005282 258 VIGNLVHSSPS-------------------------IKKEVILAGALQPVIGLLS-SSCSESKREAALLLGQFAAADS-- 309 (704)
Q Consensus 258 ~L~~l~~~~~~-------------------------~~~~~~~~~~l~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~-- 309 (704)
+|.||+..... ....+...++++.++.+|. +.++.+++.|+++|.|++.+..
T Consensus 264 aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~ 343 (584)
T 3l6x_A 264 LLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTY 343 (584)
T ss_dssp HHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHH
T ss_pred HHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccc
Confidence 99999854210 0111222345678888995 5678899999999999987542
Q ss_pred --cchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCC--------ChhHHHH
Q 005282 310 --NSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSK--------NGSLQHN 379 (704)
Q Consensus 310 --~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~--------~~~v~~~ 379 (704)
..+..+.+.++++.|+.+|.+++..+++.|+++|+||+.+..++..+ ..|+++.|+++|.++ +.++...
T Consensus 344 ~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~ 422 (584)
T 3l6x_A 344 GRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTVIS 422 (584)
T ss_dssp HHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHHHHHHTSSSSSCSGGGTCCHHHHHH
T ss_pred cHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHHHHHHHhcCCcccccccchHHHHHH
Confidence 22334556789999999999999999999999999999998887766 679999999999775 4678999
Q ss_pred HHHHHHHcc-cCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhc--cHHHHHHHHH
Q 005282 380 AAFALYGLA-DNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVA--DRAVKRRVTL 456 (704)
Q Consensus 380 a~~~L~~l~-~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~--~~~v~~~a~~ 456 (704)
|+++|.|++ .++++.+.+.+.|+++. |+.+++++ .+.+++.|++
T Consensus 423 a~~tL~NL~a~~~~~~~~I~~~g~I~~---------------------------------Lv~LL~s~~~~~~v~k~Aa~ 469 (584)
T 3l6x_A 423 ILNTINEVIAENLEAAKKLRETQGIEK---------------------------------LVLINKSGNRSEKEVRAAAL 469 (584)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTHHHH---------------------------------HHHHHTCSSSCHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHCCChHH---------------------------------HHHHHhCCCCChHHHHHHHH
Confidence 999999997 58889999999888655 66788775 7899999999
Q ss_pred HHHhccCCCccceeeecCC
Q 005282 457 ALAHLCAPDDCKTIFIDNN 475 (704)
Q Consensus 457 ~L~~l~~~~~~~~~l~~~~ 475 (704)
+|+++..+++.+..+.+.|
T Consensus 470 vL~nl~~~~elr~~~kk~G 488 (584)
T 3l6x_A 470 VLQTIWGYKELRKPLEKEG 488 (584)
T ss_dssp HHHHHHTSHHHHHHHHTTT
T ss_pred HHHHHHcCHHHHHHHHHcC
Confidence 9999988877777665543
No 16
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=2.2e-33 Score=301.21 Aligned_cols=390 Identities=19% Similarity=0.243 Sum_probs=333.1
Q ss_pred hHHHHHHHHHHHHHhhc---ChhHHHHHHhC-CChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHH
Q 005282 64 DRAAAKTASHALVEFAK---NEEIVSLIVDN-GAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQI 138 (704)
Q Consensus 64 ~~~~~~~a~~~L~~l~~---~~~~~~~l~~~-g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~ 138 (704)
+..++..|+..|..+.. ++.. +.+++. |+++.|+++|++.+ +++++..|+++|.+++ .+++....
T Consensus 33 ~~~~r~~A~~~L~~l~~~~~~~~~-~~~~~~~~~i~~L~~~L~~~~---------~~~v~~~a~~~L~~l~~~~~~~~~~ 102 (450)
T 2jdq_A 33 SPEQQLSATQKFRKLLSKEPNPPI-DEVISTPGVVARFVEFLKRKE---------NCTLQFESAWVLTNIASGNSLQTRI 102 (450)
T ss_dssp CHHHHHHHHHHHHHHHHSSSSCCH-HHHHTSTTHHHHHHHHHTCTT---------CHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCCCcH-HHHHHcCCcHHHHHHHHCCCC---------CHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 44578889999988743 3444 446677 99999999999883 2489999999999999 67888888
Q ss_pred HHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcC-CCHHHHHHHHHHH
Q 005282 139 IVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKF-VDVKVQRAAAGAL 217 (704)
Q Consensus 139 ~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L 217 (704)
+.+.|+++.|+++|++++. +++..++++|++++.+++..+..+...|+++.|+.++.+ .++.++..++++|
T Consensus 103 ~~~~~~i~~L~~lL~~~~~--------~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L 174 (450)
T 2jdq_A 103 VIQAGAVPIFIELLSSEFE--------DVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWAL 174 (450)
T ss_dssp HHHTTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 8999999999999997654 999999999999998888888889999999999999995 7899999999999
Q ss_pred HHhccCC-chhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHH
Q 005282 218 RTLAFKN-DENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKRE 296 (704)
Q Consensus 218 ~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~ 296 (704)
++++.+. +.....+. .++++.|+.++.++++.++..++++|.+++...+.....+...|+++.|+.++.++++.++..
T Consensus 175 ~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~ 253 (450)
T 2jdq_A 175 SNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSP 253 (450)
T ss_dssp HHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHH
T ss_pred HHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHH
Confidence 9999754 44333333 789999999999999999999999999999877777778888999999999999999999999
Q ss_pred HHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCc-hhhhHHhhCChHHHHHhhcCCChh
Q 005282 297 AALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTH-NQAGIAQDGGILPLLKLLDSKNGS 375 (704)
Q Consensus 297 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~L~~ll~~~~~~ 375 (704)
++++|++++.+.+.....+.+.|+++.|+.++.++++.++..|+++|++++.+.. ....+.+.|+++.|++++.++++.
T Consensus 254 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~ 333 (450)
T 2jdq_A 254 ALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFR 333 (450)
T ss_dssp HHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHH
Confidence 9999999998766666778888999999999999999999999999999997654 445567789999999999999999
Q ss_pred HHHHHHHHHHHccc--CCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHH
Q 005282 376 LQHNAAFALYGLAD--NEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRR 453 (704)
Q Consensus 376 v~~~a~~~L~~l~~--~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~ 453 (704)
++..|+++|.+++. +++....+++.|+ ++.|+.++.++++.++..
T Consensus 334 v~~~a~~~L~~l~~~~~~~~~~~l~~~~~---------------------------------i~~L~~ll~~~~~~v~~~ 380 (450)
T 2jdq_A 334 TRKEAAWAITNATSGGSAEQIKYLVELGC---------------------------------IKPLCDLLTVMDSKIVQV 380 (450)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHTC---------------------------------HHHHHHGGGSSCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHCCC---------------------------------HHHHHHHhcCCCHHHHHH
Confidence 99999999999985 4566666666555 445777888889999999
Q ss_pred HHHHHHhccCCC------------ccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhh
Q 005282 454 VTLALAHLCAPD------------DCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATK 505 (704)
Q Consensus 454 a~~~L~~l~~~~------------~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~ 505 (704)
|+++|.+++... .....+.+.||++.|..+..+++++++..|..+|.++...
T Consensus 381 a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 444 (450)
T 2jdq_A 381 ALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGT 444 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCc
Confidence 999999995422 1234566779999999999999999999999999988753
No 17
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=5e-34 Score=323.17 Aligned_cols=435 Identities=19% Similarity=0.228 Sum_probs=364.9
Q ss_pred HHHHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhh
Q 005282 50 QIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLL 129 (704)
Q Consensus 50 l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l 129 (704)
.++.|...+..+ .+...+..|+.+|.+++.+++++..+.+.|+++.|+++|++.+. .++..|+++|.+|
T Consensus 193 ~i~~Lv~~L~~~-~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~----------~v~~~A~~aL~nL 261 (780)
T 2z6g_A 193 MVSAIVRTMQNT-NDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVD----------SVLFHAITTLHNL 261 (780)
T ss_dssp HHHHHHHHHHHC-CCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCH----------HHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCC-CCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCH----------HHHHHHHHHHHHH
Confidence 444444444322 25567899999999999988888899999999999999998865 9999999999999
Q ss_pred c-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCC-H
Q 005282 130 A-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD-V 207 (704)
Q Consensus 130 ~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~ 207 (704)
+ ..++.+..+.+.|+++.|+.+|.+.+. .++..++.+|.+++..+++.+..+...|+++.|+.++++.+ .
T Consensus 262 a~~~~~~~~~v~~~g~v~~Lv~lL~~~~~--------~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~ 333 (780)
T 2z6g_A 262 LLHQEGAKMAVRLAGGLQKMVALLNKTNV--------KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYE 333 (780)
T ss_dssp HHHSTTHHHHHHHTTHHHHHHHGGGCCCH--------HHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCH
T ss_pred hCCChhhHHHHHHcCCHHHHHHHHhcCCH--------HHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHH
Confidence 9 667888899999999999999987543 88999999999999878889999999999999999999765 4
Q ss_pred HHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhc
Q 005282 208 KVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLS 287 (704)
Q Consensus 208 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~ 287 (704)
..+..++.+|++++. .+.++..+++.|+++.|+.++.+.+..++..++++|.+++...+.. ....++++.|+.++.
T Consensus 334 ~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~ 409 (780)
T 2z6g_A 334 KLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLG 409 (780)
T ss_dssp HHHHHHHHHHHHHHT-STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhc-ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHc
Confidence 566788999999996 7788999999999999999999999999999999999999765331 112467899999999
Q ss_pred CCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCC-CC-HHHHHHHHHHHHHhhcCCch----hhhHHhhCC
Q 005282 288 SSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQS-PD-SQLKEMSAFALGRLAQDTHN----QAGIAQDGG 361 (704)
Q Consensus 288 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~-~~v~~~a~~~L~~l~~~~~~----~~~~~~~~~ 361 (704)
+.++.++..|+++|++++..++..+..+.+.|+++.|+.++.+ ++ ..++..|+++|+||+..... +..+...|+
T Consensus 410 ~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~ 489 (780)
T 2z6g_A 410 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYG 489 (780)
T ss_dssp CSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCC
Confidence 9999999999999999998777788889999999999999975 33 48999999999999875432 456788899
Q ss_pred hHHHHHhhcCCCh-hHHHHHHHHHHHcccCCchhhHHHhhCCccccccccccccc-----------------------ch
Q 005282 362 ILPLLKLLDSKNG-SLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQP-----------------------TK 417 (704)
Q Consensus 362 ~~~L~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~-----------------------~~ 417 (704)
++.|+++|.+.+. .++..++++|+|++.+++++..+.+.|+++.|++....... ..
T Consensus 490 l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~ 569 (780)
T 2z6g_A 490 LPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIV 569 (780)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHH
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHH
Confidence 9999999988765 99999999999999988888889999998888653321100 01
Q ss_pred HHHHHHHHHHH-------HHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCccceeeecCCcHHHHHHHHhhcchh
Q 005282 418 DCVARTLKRLE-------EKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVK 490 (704)
Q Consensus 418 ~~~~~~~~~~~-------~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~ 490 (704)
...+..+..+. .....+.++.|+.++.++++.++..|+.+|.+++.++..+..+.+.||++.|++++.+++++
T Consensus 570 ~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~ 649 (780)
T 2z6g_A 570 EACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEG 649 (780)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHH
T ss_pred HHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHH
Confidence 11222222221 12256789999999999999999999999999988888888889999999999999999999
Q ss_pred hhhhHHHHHHHHhhhcC
Q 005282 491 QREESSVALYKLATKAT 507 (704)
Q Consensus 491 ~~~~a~~~L~~L~~~~~ 507 (704)
+|..|+++|.+++.+.+
T Consensus 650 Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 650 VATYAAAVLFRMSEDKP 666 (780)
T ss_dssp HHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHcCCh
Confidence 99999999999998764
No 18
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=2.8e-33 Score=307.03 Aligned_cols=435 Identities=21% Similarity=0.252 Sum_probs=354.4
Q ss_pred HHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhC-CChHHHHhhccCCCcCCCCCCCCchHHHHHH
Q 005282 44 VQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDN-GAVPALVEHLQTPPQLTNAQIPYEHEVEKEC 122 (704)
Q Consensus 44 ~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~-g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a 122 (704)
...++.+++.|.. ++..++..|+..|.+++.+++.+..+... |+++.|+++|.+.+ |++++..|
T Consensus 16 ~~~i~~Lv~lL~~------~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~---------~~~~~~~a 80 (529)
T 1jdh_A 16 TRAIPELTKLLND------EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN---------DVETARCT 80 (529)
T ss_dssp -CHHHHHHHHHTC------SCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCC---------CHHHHHHH
T ss_pred HhhHHHHHHHhCC------CCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCC---------CHHHHHHH
Confidence 3456666665532 45568899999999999988887777765 89999999997653 24899999
Q ss_pred HHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHh
Q 005282 123 AFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELL 202 (704)
Q Consensus 123 ~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll 202 (704)
+++|.+++.+++++..+.+.|+++.|+.+|++++. .++..++++|.+++.+++..+..+.+.|+++.|+.++
T Consensus 81 ~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~--------~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll 152 (529)
T 1jdh_A 81 AGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD--------SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL 152 (529)
T ss_dssp HHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGG
T ss_pred HHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHH
Confidence 99999999888899999999999999999988654 8999999999999988777888888999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHH
Q 005282 203 KFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSED-ASVHFEAVGVIGNLVHSSPSIKKEVILAGALQP 281 (704)
Q Consensus 203 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~ 281 (704)
.++++.++..++.+|.+++.++++.+..+.+.|+++.|+.++++++ ...+..++.+|.+++.. +..+..+.+.|+++.
T Consensus 153 ~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~~~~ 231 (529)
T 1jdh_A 153 NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQA 231 (529)
T ss_dssp GCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHH
Confidence 9999999999999999999878999999999999999999998654 56677789999999965 677888889999999
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC-chhhhHHhhC
Q 005282 282 VIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDT-HNQAGIAQDG 360 (704)
Q Consensus 282 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~ 360 (704)
|+.++.+++++++..++++|.+++...+... ...++++.|+.++.+++++++..++++|++++.+. +++..+.+.|
T Consensus 232 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~ 308 (529)
T 1jdh_A 232 LGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 308 (529)
T ss_dssp HHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTT
T ss_pred HHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcC
Confidence 9999999999999999999999997543321 22478999999999999999999999999999875 4777788899
Q ss_pred ChHHHHHhhcC--CChhHHHHHHHHHHHcccC-Cc---hhhHHHhhCCccccccccccccc--chHHHHHHHHHHH----
Q 005282 361 GILPLLKLLDS--KNGSLQHNAAFALYGLADN-ED---NVADLVRVGGVQKLQDGEFTVQP--TKDCVARTLKRLE---- 428 (704)
Q Consensus 361 ~~~~L~~ll~~--~~~~v~~~a~~~L~~l~~~-~~---~~~~l~~~g~i~~l~~~~~~~~~--~~~~~~~~~~~~~---- 428 (704)
+++.|++++.+ .++.++..++.+|++++.. ++ .+..+.+.|+++.|++....... .....+..+.++.
T Consensus 309 ~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~ 388 (529)
T 1jdh_A 309 GIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA 388 (529)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG
T ss_pred ChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChh
Confidence 99999999965 3479999999999999974 33 36688899999988765443321 1222223333332
Q ss_pred ---HHhhcchhHHHHHHHhhccHHHHHHHHHHHHh----------------------ccCCCccceeeecCCcHHHHHHH
Q 005282 429 ---EKVHGRVLNHLLYLLRVADRAVKRRVTLALAH----------------------LCAPDDCKTIFIDNNGLELLLGL 483 (704)
Q Consensus 429 ---~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~----------------------l~~~~~~~~~l~~~~~i~~L~~l 483 (704)
.....++++.|+.++.++++.++..|+|++.| |+.+++++..+.+.|+++.|+.+
T Consensus 389 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~l 468 (529)
T 1jdh_A 389 NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQL 468 (529)
T ss_dssp GHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHG
T ss_pred hhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHH
Confidence 22356789999999998888888766665554 66666666777889999999999
Q ss_pred HhhcchhhhhhHHHHHHHHhhh
Q 005282 484 LESTSVKQREESSVALYKLATK 505 (704)
Q Consensus 484 l~~~~~~~~~~a~~~L~~L~~~ 505 (704)
+.++++.++..|+++|.+|+.+
T Consensus 469 l~~~~~~v~~~a~~~l~~l~~~ 490 (529)
T 1jdh_A 469 LYSPIENIQRVAAGVLCELAQD 490 (529)
T ss_dssp GGCSCHHHHHHHHHHHHHHTTS
T ss_pred HcCCchHHHHHHHHHHHHHhcC
Confidence 9999999999999999999854
No 19
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=4e-33 Score=296.69 Aligned_cols=362 Identities=17% Similarity=0.218 Sum_probs=295.6
Q ss_pred HHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHH
Q 005282 47 IRAQIDILNSKFSSDETDRAAAKTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFA 125 (704)
Q Consensus 47 ~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~ 125 (704)
++.++..|.. .+...+..|+++|.+++. ++..+..+++.|++|.|+++|.+++. +++..|+++
T Consensus 4 l~~lv~~L~s------~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~----------~~~~~A~~a 67 (457)
T 1xm9_A 4 IPKAVQYLSS------QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQ----------NVQQAAAGA 67 (457)
T ss_dssp HHHHHHHHHS------SCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCH----------HHHHHHHHH
T ss_pred HHHHHHHHCC------CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCH----------HHHHHHHHH
Confidence 4555655543 233578999999999987 46677788999999999999998754 999999999
Q ss_pred HHhhc-CChhhHHHHHHcCCcHHHHHHHh-hccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHh-
Q 005282 126 LGLLA-VKPEHQQIIVDTGALPHLVSLLK-QYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELL- 202 (704)
Q Consensus 126 L~~l~-~~~~~~~~~~~~g~l~~L~~lL~-~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll- 202 (704)
|.||+ .+++++..+.+.|++|.|+++|+ +.+. ++++.++|+|+|++.+ +..+..+.+ |++|.|++++
T Consensus 68 L~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~--------~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~ 137 (457)
T 1xm9_A 68 LRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNA--------EIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVI 137 (457)
T ss_dssp HHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCH--------HHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTT
T ss_pred HHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCH--------HHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHh
Confidence 99999 66999999999999999999998 4433 9999999999999986 778888888 9999999999
Q ss_pred -------cC--------CCHHHHHHHHHHHHHhccCCchhhHHhHhc-CChHHHHHhhcC------CCHHHHHHHHHHHH
Q 005282 203 -------KF--------VDVKVQRAAAGALRTLAFKNDENKKLIVEC-NALPTLVLMLRS------EDASVHFEAVGVIG 260 (704)
Q Consensus 203 -------~~--------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~lL~~------~~~~v~~~a~~~L~ 260 (704)
.+ .++.+++.|+++|+||+.+ ++++..+.+. |+++.|+.+|++ .+..++..++++|.
T Consensus 138 ~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~ 216 (457)
T 1xm9_A 138 IPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLH 216 (457)
T ss_dssp HHHHTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHH
T ss_pred ccccccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHH
Confidence 32 3567788999999999975 8899999997 999999999985 46678889999999
Q ss_pred HHhcCC--------------------------------------------------hhhHHHHHHcCCHHHHHHHhcCC-
Q 005282 261 NLVHSS--------------------------------------------------PSIKKEVILAGALQPVIGLLSSS- 289 (704)
Q Consensus 261 ~l~~~~--------------------------------------------------~~~~~~~~~~~~l~~L~~ll~~~- 289 (704)
+++... +...+.+.+.|+++.++.+|.+.
T Consensus 217 nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~ 296 (457)
T 1xm9_A 217 NLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSK 296 (457)
T ss_dssp HHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCC
T ss_pred hcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcC
Confidence 986210 11122334556788899999654
Q ss_pred ChhHHHHHHHHHHHHhccCCcc-----hHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHH
Q 005282 290 CSESKREAALLLGQFAAADSNS-----KVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILP 364 (704)
Q Consensus 290 ~~~~~~~a~~~L~~l~~~~~~~-----~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~ 364 (704)
++.+++.|+++|+|++.++... +..+.+.|+++.|+.+|.+++.+++..|+++|.|++.+.+.+..+ ..|++++
T Consensus 297 ~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i-~~~~i~~ 375 (457)
T 1xm9_A 297 KDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVM-GNQVFPE 375 (457)
T ss_dssp CHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHH-HHHTHHH
T ss_pred CHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHH-HHhhhHH
Confidence 6788999999999999765442 223346899999999999999999999999999999987666544 4689999
Q ss_pred HHHhhcCCCh------hHHHHHHHHHHHccc-CCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhH
Q 005282 365 LLKLLDSKNG------SLQHNAAFALYGLAD-NEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLN 437 (704)
Q Consensus 365 L~~ll~~~~~------~v~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (704)
|+++|.++++ ++...++++|.++.. +++....+.+.|+++
T Consensus 376 Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~--------------------------------- 422 (457)
T 1xm9_A 376 VTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLN--------------------------------- 422 (457)
T ss_dssp HHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHH---------------------------------
T ss_pred HHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHH---------------------------------
Confidence 9999987643 688899999999975 667777777766654
Q ss_pred HHHHHHhhc-cHHHHHHHHHHHHhccCCCccce
Q 005282 438 HLLYLLRVA-DRAVKRRVTLALAHLCAPDDCKT 469 (704)
Q Consensus 438 ~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~ 469 (704)
.|..++.++ ++.+++.|+++|.++..+.+.|.
T Consensus 423 ~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~l~~ 455 (457)
T 1xm9_A 423 NIINLCRSSASPKAAEAARLLLSDMWSSKELQG 455 (457)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCSS
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHcchhhhc
Confidence 577788888 99999999999999987766554
No 20
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=2.8e-32 Score=298.25 Aligned_cols=364 Identities=18% Similarity=0.256 Sum_probs=319.2
Q ss_pred CChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CCh-hhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHH
Q 005282 92 GAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKP-EHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIR 169 (704)
Q Consensus 92 g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~-~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~ 169 (704)
..++.|++.|.+++. +++..|+++|.+++ ..+ .....+++.|+++.|+.+|.+.+. +.++.
T Consensus 74 ~~l~~lv~~L~s~~~----------~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~-------~~v~~ 136 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDN----------NLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDF-------PQLQF 136 (528)
T ss_dssp -CHHHHHHHHTSSCH----------HHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTC-------HHHHH
T ss_pred HHHHHHHHHHcCCCH----------HHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCC-------HHHHH
Confidence 458999999988754 89999999999997 443 677889999999999999987652 38999
Q ss_pred HHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhh-cCCC
Q 005282 170 RAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLML-RSED 248 (704)
Q Consensus 170 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~ 248 (704)
.|+++|.+++.+++..+..+...|+++.|+.++.++++.++..|+++|++++.+.+..+..+...|+++.|+.++ .+.+
T Consensus 137 ~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~ 216 (528)
T 4b8j_A 137 EAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTK 216 (528)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCC
T ss_pred HHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCC
Confidence 999999999988888999999999999999999999999999999999999987788899999999999999999 5789
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhh
Q 005282 249 ASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEML 328 (704)
Q Consensus 249 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll 328 (704)
+.++..++++|.+++...+... .....++++.|+.++.++++.++..++++|++++...+.....+.+.|+++.|+.++
T Consensus 217 ~~v~~~a~~~L~~L~~~~~~~~-~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL 295 (528)
T 4b8j_A 217 LSMLRNATWTLSNFCRGKPQPS-FEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 295 (528)
T ss_dssp HHHHHHHHHHHHHHHCSSSCCC-HHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHH
Confidence 9999999999999998754333 344589999999999999999999999999999976666667788899999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCch-hhhHHhhCChHHHHHhhcCC-ChhHHHHHHHHHHHccc-CCchhhHHHhhCCccc
Q 005282 329 QSPDSQLKEMSAFALGRLAQDTHN-QAGIAQDGGILPLLKLLDSK-NGSLQHNAAFALYGLAD-NEDNVADLVRVGGVQK 405 (704)
Q Consensus 329 ~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~L~~ll~~~-~~~v~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~ 405 (704)
.++++.++..|+++|++++.+.+. ...+...|+++.|+.++.+. ++.++..|+++|.+++. +++....++..|+
T Consensus 296 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~--- 372 (528)
T 4b8j_A 296 LHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGI--- 372 (528)
T ss_dssp TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTC---
T ss_pred cCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC---
Confidence 999999999999999999986554 44567789999999999988 99999999999999986 4455566666555
Q ss_pred ccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCC--CccceeeecCCcHHHHHHH
Q 005282 406 LQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAP--DDCKTIFIDNNGLELLLGL 483 (704)
Q Consensus 406 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~l~~~~~i~~L~~l 483 (704)
++.|+.++.++++.++..|+++|++++.. +.....+.+.|+++.|+.+
T Consensus 373 ------------------------------i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~l 422 (528)
T 4b8j_A 373 ------------------------------IGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDL 422 (528)
T ss_dssp ------------------------------HHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHG
T ss_pred ------------------------------HHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHH
Confidence 45677888899999999999999999653 5666677788999999999
Q ss_pred HhhcchhhhhhHHHHHHHHhhhc
Q 005282 484 LESTSVKQREESSVALYKLATKA 506 (704)
Q Consensus 484 l~~~~~~~~~~a~~~L~~L~~~~ 506 (704)
+.+.++.++..|+.+|.+|....
T Consensus 423 L~~~d~~v~~~al~~L~~l~~~~ 445 (528)
T 4b8j_A 423 LICPDIRIVTVCLEGLENILKVG 445 (528)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998765
No 21
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.1e-31 Score=299.97 Aligned_cols=433 Identities=21% Similarity=0.246 Sum_probs=360.5
Q ss_pred HHHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhC-CChHHHHhhccCCCcCCCCCCCCchHHHHHHHH
Q 005282 46 DIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDN-GAVPALVEHLQTPPQLTNAQIPYEHEVEKECAF 124 (704)
Q Consensus 46 ~~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~-g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~ 124 (704)
.++.+++.|.. ++..++..|+.+|.+++.+...+..++.. |+++.|+++|.+.+ +++++..|+.
T Consensus 15 ~i~~Lv~lL~~------~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~---------~~~~~~~A~~ 79 (644)
T 2z6h_A 15 AIPELTKLLND------EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN---------DVETARCTAG 79 (644)
T ss_dssp THHHHHHHHTC------SCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCC---------CHHHHHHHHH
T ss_pred hHHHHHHHHcC------CCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCC---------CHHHHHHHHH
Confidence 46666665532 45568999999999999987777777655 89999999998753 2589999999
Q ss_pred HHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcC
Q 005282 125 ALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKF 204 (704)
Q Consensus 125 ~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~ 204 (704)
+|.+++.+++.+..+.+.|+++.|+.+|++.+. .++..++++|.+++...+..+..+.+.|+++.|+.++++
T Consensus 80 ~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~--------~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~ 151 (644)
T 2z6h_A 80 TLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD--------SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK 151 (644)
T ss_dssp HHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSH--------HHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC
T ss_pred HHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCH--------HHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCc
Confidence 999999878899999999999999999988654 999999999999998777778888899999999999999
Q ss_pred CCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHH
Q 005282 205 VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSED-ASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVI 283 (704)
Q Consensus 205 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~ 283 (704)
+++.++..++.+|.+++.++++++..+.+.|+++.|+.++++.+ ..++..++.+|.+++.. +..+..+.+.|+++.|+
T Consensus 152 ~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~~~~l~~~g~l~~L~ 230 (644)
T 2z6h_A 152 TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALG 230 (644)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTHHHHHHHTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHH
Confidence 99999999999999999878899999999999999999998654 67888999999999964 67788899999999999
Q ss_pred HHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC-chhhhHHhhCCh
Q 005282 284 GLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDT-HNQAGIAQDGGI 362 (704)
Q Consensus 284 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~ 362 (704)
.++.+.+..++..++++|.+++...+.. ....++++.|+.++.+++++++..++++|++|+.++ .++..+.+.|++
T Consensus 231 ~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v 307 (644)
T 2z6h_A 231 LHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI 307 (644)
T ss_dssp TTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCH
Confidence 9999999999999999999998754332 122378999999999999999999999999999875 557778888999
Q ss_pred HHHHHhhcCC--ChhHHHHHHHHHHHcccC-Cc---hhhHHHhhCCcccccccccccc--cchHHHHHHHHHHH------
Q 005282 363 LPLLKLLDSK--NGSLQHNAAFALYGLADN-ED---NVADLVRVGGVQKLQDGEFTVQ--PTKDCVARTLKRLE------ 428 (704)
Q Consensus 363 ~~L~~ll~~~--~~~v~~~a~~~L~~l~~~-~~---~~~~l~~~g~i~~l~~~~~~~~--~~~~~~~~~~~~~~------ 428 (704)
+.|++++.+. .+.++..|+.+|.+++.. ++ .+..+...|+++.|++...... ......+..+.++.
T Consensus 308 ~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~ 387 (644)
T 2z6h_A 308 EALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH 387 (644)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH
T ss_pred HHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHH
Confidence 9999999763 379999999999999963 32 3455778899998876554332 12222333333332
Q ss_pred -HHhhcchhHHHHHHHhhcc----------------------HHHHHHHHHHHHhccCCCccceeeecCCcHHHHHHHHh
Q 005282 429 -EKVHGRVLNHLLYLLRVAD----------------------RAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLE 485 (704)
Q Consensus 429 -~~~~~~~~~~L~~ll~~~~----------------------~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~ 485 (704)
.....++++.|+.++..++ .+++..++.+|.+|+.+..++..+.+.|+++.|++++.
T Consensus 388 ~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~ 467 (644)
T 2z6h_A 388 APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLY 467 (644)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHc
Confidence 2336688999999998754 45667788888889888888888889999999999999
Q ss_pred hcchhhhhhHHHHHHHHhhh
Q 005282 486 STSVKQREESSVALYKLATK 505 (704)
Q Consensus 486 ~~~~~~~~~a~~~L~~L~~~ 505 (704)
++++.++..|+++|.+++.+
T Consensus 468 ~~~~~v~~~a~~aL~~l~~~ 487 (644)
T 2z6h_A 468 SPIENIQRVAAGVLCELAQD 487 (644)
T ss_dssp CSCHHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHHHHcC
Confidence 99999999999999999864
No 22
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=2.2e-31 Score=291.04 Aligned_cols=368 Identities=18% Similarity=0.260 Sum_probs=319.0
Q ss_pred hCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-C-ChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHH
Q 005282 90 DNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-V-KPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGV 167 (704)
Q Consensus 90 ~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~-~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~ 167 (704)
..+.++.|++.|.+++. +++..|+++|.++. . .......+++.|+++.|+.+|.+.++ +.+
T Consensus 85 ~~~~i~~lv~~L~s~~~----------~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~-------~~v 147 (530)
T 1wa5_B 85 LQQELPQMTQQLNSDDM----------QEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQP-------EML 147 (530)
T ss_dssp --CCHHHHHHHHSCSSH----------HHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSC-------HHH
T ss_pred hHHHHHHHHHHHcCCCH----------HHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCC-------HHH
Confidence 34679999999998755 89999999999997 3 24556778899999999999988632 389
Q ss_pred HHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCC
Q 005282 168 IRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSE 247 (704)
Q Consensus 168 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~ 247 (704)
+..|+++|++++.+++..+..+...|+++.|+.+|.++++.++..|+++|++++.+.+..+..+...|+++.|+.++.+.
T Consensus 148 ~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~ 227 (530)
T 1wa5_B 148 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN 227 (530)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccC
Confidence 99999999999988888888899999999999999999999999999999999987788899999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHh
Q 005282 248 DASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEM 327 (704)
Q Consensus 248 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 327 (704)
++.++..++++|++++.............++++.|+.++.++++.++..++++|.+++...+.....+.+.|+++.|+.+
T Consensus 228 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~l 307 (530)
T 1wa5_B 228 KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVEL 307 (530)
T ss_dssp CHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHG
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHH
Confidence 99999999999999997652333345568999999999999999999999999999997666777778888999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhhcCCchh-hhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHccc-CCchhhHHHhhCCccc
Q 005282 328 LQSPDSQLKEMSAFALGRLAQDTHNQ-AGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD-NEDNVADLVRVGGVQK 405 (704)
Q Consensus 328 l~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~ 405 (704)
+.++++.++..|+++|++++.+.+.. ..+...|+++.|+.++.++++.++..|+++|.+++. +++....+++.|+
T Consensus 308 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~--- 384 (530)
T 1wa5_B 308 LSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL--- 384 (530)
T ss_dssp GGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTC---
T ss_pred HCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCC---
Confidence 99999999999999999999876543 446777999999999999999999999999999996 5555666666555
Q ss_pred ccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCC--C--ccceeeecCCcHHHHH
Q 005282 406 LQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAP--D--DCKTIFIDNNGLELLL 481 (704)
Q Consensus 406 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~--~~~~~l~~~~~i~~L~ 481 (704)
++.|+.++.++++.++..|+++|++++.. + .....+.+.|+++.|+
T Consensus 385 ------------------------------l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~ 434 (530)
T 1wa5_B 385 ------------------------------IPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLC 434 (530)
T ss_dssp ------------------------------HHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHH
T ss_pred ------------------------------HHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHH
Confidence 45577788889999999999999999652 2 4455567889999999
Q ss_pred HHHhhcchhhhhhHHHHHHHHhhhcC
Q 005282 482 GLLESTSVKQREESSVALYKLATKAT 507 (704)
Q Consensus 482 ~ll~~~~~~~~~~a~~~L~~L~~~~~ 507 (704)
.++.+.++.++..|+++|.++....+
T Consensus 435 ~ll~~~~~~v~~~al~aL~~l~~~~~ 460 (530)
T 1wa5_B 435 DLLEIADNRIIEVTLDALENILKMGE 460 (530)
T ss_dssp HHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999988663
No 23
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=5.1e-31 Score=298.53 Aligned_cols=432 Identities=21% Similarity=0.237 Sum_probs=356.5
Q ss_pred HHHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhC-CChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhh
Q 005282 51 IDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDN-GAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLL 129 (704)
Q Consensus 51 ~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~-g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l 129 (704)
++.|..++.+ .+..++..|+.+|.+++.+...+..+.+. |+++.|+++|.+.. +++++..|+++|.+|
T Consensus 152 ip~Lv~lL~~--~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~---------d~~vr~~Aa~aL~~L 220 (780)
T 2z6g_A 152 IPELTKLLND--EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN---------DVETARCTSGTLHNL 220 (780)
T ss_dssp HHHHHHHHHC--SCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC--CCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCC---------CHHHHHHHHHHHHHH
Confidence 4444444432 34568999999999999987777777655 89999999998653 248999999999999
Q ss_pred cCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHH
Q 005282 130 AVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKV 209 (704)
Q Consensus 130 ~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~ 209 (704)
+..++++..+.+.|+++.|+.+|++.+. .++..|+++|.+++...+..+..+.+.|+++.|+.++.+++..+
T Consensus 221 s~~~~~~~~i~~~g~I~~Lv~lL~~~~~--------~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v 292 (780)
T 2z6g_A 221 SHHREGLLAIFKSGGIPALVNMLGSPVD--------SVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKF 292 (780)
T ss_dssp HTSHHHHHHHHHTTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHH
T ss_pred hCCchhHHHHHHcCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHH
Confidence 9878889999999999999999988754 89999999999999887888888889999999999999999999
Q ss_pred HHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCH-HHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcC
Q 005282 210 QRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDA-SVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSS 288 (704)
Q Consensus 210 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~ 288 (704)
+..++.+|.+++.++++.+..+.+.|+++.|+.++++.++ ..+..++.+|.+++.. +..+..++..|+++.|+.++.+
T Consensus 293 ~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~l~~Ll~lL~~ 371 (780)
T 2z6g_A 293 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTD 371 (780)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-TTHHHHHHHTTHHHHHGGGTTC
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHHHHHHHHhchHHHHHHHHcC
Confidence 9999999999998788999999999999999999997654 5666889999999964 6678888899999999999999
Q ss_pred CChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC-chhhhHHhhCChHHHHH
Q 005282 289 SCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDT-HNQAGIAQDGGILPLLK 367 (704)
Q Consensus 289 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~ 367 (704)
.+..++..++++|.+++...... ....++++.|+.++.+.++.++..|+++|++|+.+. ..+..+.+.|+++.|++
T Consensus 372 ~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~ 448 (780)
T 2z6g_A 372 PSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVR 448 (780)
T ss_dssp SCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHH
Confidence 99999999999999998654332 122468999999999999999999999999999875 45667888899999999
Q ss_pred hhcC-CC-hhHHHHHHHHHHHcccC-Cc---hhhHHHhhCCccccccccccccc--chHHHHHHHHHHH-------HHhh
Q 005282 368 LLDS-KN-GSLQHNAAFALYGLADN-ED---NVADLVRVGGVQKLQDGEFTVQP--TKDCVARTLKRLE-------EKVH 432 (704)
Q Consensus 368 ll~~-~~-~~v~~~a~~~L~~l~~~-~~---~~~~l~~~g~i~~l~~~~~~~~~--~~~~~~~~~~~~~-------~~~~ 432 (704)
++.+ ++ ..++..|+++|++|+.. ++ .+..+...|+++.|++....... .....+..+.++. ....
T Consensus 449 lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~ 528 (780)
T 2z6g_A 449 TVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLRE 528 (780)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHH
T ss_pred HHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9965 33 48999999999999863 33 24578888999988765443322 1222333333332 2225
Q ss_pred cchhHHHHHHHhhcc----------------------HHHHHHHHHHHHhccCCCccceeeecCCcHHHHHHHHhhcchh
Q 005282 433 GRVLNHLLYLLRVAD----------------------RAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVK 490 (704)
Q Consensus 433 ~~~~~~L~~ll~~~~----------------------~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~ 490 (704)
.++++.|+.++.+++ ++++..++.+|++|+.++.++..+.+.|+++.|+.++.++++.
T Consensus 529 ~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~ 608 (780)
T 2z6g_A 529 QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIEN 608 (780)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHH
T ss_pred CCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHH
Confidence 678999999997754 3466778889999988888888888899999999999999999
Q ss_pred hhhhHHHHHHHHhhh
Q 005282 491 QREESSVALYKLATK 505 (704)
Q Consensus 491 ~~~~a~~~L~~L~~~ 505 (704)
++..|+.+|.+|+.+
T Consensus 609 v~~~a~~aL~~L~~~ 623 (780)
T 2z6g_A 609 IQRVAAGVLCELAQD 623 (780)
T ss_dssp HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999754
No 24
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.98 E-value=2.7e-30 Score=277.20 Aligned_cols=374 Identities=20% Similarity=0.257 Sum_probs=308.6
Q ss_pred HHHHhhhccCCchhhHHHHHHHHHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHh
Q 005282 50 QIDILNSKFSSDETDRAAAKTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGL 128 (704)
Q Consensus 50 l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~ 128 (704)
+++.|..++.++ .+..++..|+++|.+++. +++..+.+++.|+++.|+++|++++. +++..|+++|++
T Consensus 65 ~i~~L~~~L~~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~----------~vr~~a~~~L~~ 133 (450)
T 2jdq_A 65 VVARFVEFLKRK-ENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFE----------DVQEQAVWALGN 133 (450)
T ss_dssp HHHHHHHHHTCT-TCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCH----------HHHHHHHHHHHH
T ss_pred cHHHHHHHHCCC-CCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCH----------HHHHHHHHHHHH
Confidence 444444444433 245678999999999998 47788888899999999999998754 999999999999
Q ss_pred hc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcC-hhhhhhhhccCCcHHHHHHhcCCC
Q 005282 129 LA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHEN-ANIKTRVRVEDGIPPLVELLKFVD 206 (704)
Q Consensus 129 l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~ll~~~~ 206 (704)
++ .+++.+..+.+.|+++.|+.++.+..+ +.++..++++|++++... +.....+ ..++++.|+.++.+++
T Consensus 134 l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~-------~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l~~~~ 205 (450)
T 2jdq_A 134 IAGDSTMCRDYVLDCNILPPLLQLFSKQNR-------LTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLLFVSD 205 (450)
T ss_dssp HHTTCHHHHHHHHHTTCHHHHHHHTTSCCC-------HHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHTTCCC
T ss_pred HccCCHHHHHHHHHCCCHHHHHHHhcCCCC-------HHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHHccCC
Confidence 99 678899999999999999999985322 399999999999999654 4333333 3889999999999999
Q ss_pred HHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHh
Q 005282 207 VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLL 286 (704)
Q Consensus 207 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll 286 (704)
+.++..++++|.+++.+.++....+...|+++.|+.++.++++.++..++++|++++..++...+.+.+.|+++.|+.++
T Consensus 206 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll 285 (450)
T 2jdq_A 206 TDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLL 285 (450)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHH
Confidence 99999999999999987777888888999999999999999999999999999999988887777788889999999999
Q ss_pred cCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC--CchhhhHHhhCChHH
Q 005282 287 SSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQD--THNQAGIAQDGGILP 364 (704)
Q Consensus 287 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~~~ 364 (704)
.++++.++..|+++|++++.+++.....+.+.|+++.|+.++.++++.++..|+++|++++.+ ++....+...|+++.
T Consensus 286 ~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~ 365 (450)
T 2jdq_A 286 SSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKP 365 (450)
T ss_dssp TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHH
Confidence 999999999999999999987777777788899999999999999999999999999999964 344556778899999
Q ss_pred HHHhhcCCChhHHHHHHHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHh
Q 005282 365 LLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLR 444 (704)
Q Consensus 365 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~ 444 (704)
|++++.++++.++..++++|.+++...+..... ..+.+..+ ...+ ...+.++.|..+..
T Consensus 366 L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~-~~~~~~~~--------------~~~l------~~~g~~~~l~~l~~ 424 (450)
T 2jdq_A 366 LCDLLTVMDSKIVQVALNGLENILRLGEQEAKR-NGTGINPY--------------CALI------EEAYGLDKIEFLQS 424 (450)
T ss_dssp HHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHH-SCSCCCHH--------------HHHH------HHHHCHHHHHHHHC
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhc-cccchhHH--------------HHHH------HHcCcHHHHHHHHc
Confidence 999999999999999999999998643322111 01111110 0001 01234566777888
Q ss_pred hccHHHHHHHHHHHHhccC
Q 005282 445 VADRAVKRRVTLALAHLCA 463 (704)
Q Consensus 445 ~~~~~v~~~a~~~L~~l~~ 463 (704)
+++..++..|..+|.++-.
T Consensus 425 ~~~~~v~~~a~~~l~~~~~ 443 (450)
T 2jdq_A 425 HENQEIYQKAFDLIEHYFG 443 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHCC
Confidence 8899999999999999854
No 25
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=2.7e-30 Score=261.69 Aligned_cols=280 Identities=21% Similarity=0.252 Sum_probs=240.5
Q ss_pred CCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhcc---CCCCCcchhHHHHHHHHHHHHhhhcChhhhhh
Q 005282 112 IPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYK---NGGNSRALSGVIRRAADAITNLAHENANIKTR 188 (704)
Q Consensus 112 ~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~---~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 188 (704)
.++++.+. +|+++|+|++.++++|+.+.+.|+++.|+.+|.... ........+++++.|+|+|.|++.+++..+..
T Consensus 43 ~~~~~~~~-~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~ 121 (354)
T 3nmw_A 43 APVEHQIC-PAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKAT 121 (354)
T ss_dssp CGGGGTHH-HHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred CcchHHHH-HHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 33344444 899999999988999999999999999999996431 00000112489999999999999877777777
Q ss_pred hhcc-CCcHHHHHHhcCCCHHHHHHHHHHHHHhccC-CchhhHHhHhcCChHHHHHhh-cCCCHHHHHHHHHHHHHHhcC
Q 005282 189 VRVE-DGIPPLVELLKFVDVKVQRAAAGALRTLAFK-NDENKKLIVECNALPTLVLML-RSEDASVHFEAVGVIGNLVHS 265 (704)
Q Consensus 189 ~~~~-~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~ 265 (704)
+... |++|.|+.+|++++++++..|+++|++|+.+ ++.++..+.+.|+++.|+++| +++++.+++.++++|+||+..
T Consensus 122 i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~ 201 (354)
T 3nmw_A 122 LCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH 201 (354)
T ss_dssp HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc
Confidence 7554 5599999999999999999999999999974 567899999999999999975 678899999999999999986
Q ss_pred ChhhHHHHH-HcCCHHHHHHHhcCCCh----hHHHHHHHHHHHHhc---cCCcchHHHHhcCChHHHHHhhCCCCHHHHH
Q 005282 266 SPSIKKEVI-LAGALQPVIGLLSSSCS----ESKREAALLLGQFAA---ADSNSKVHIVQRGAVRPLIEMLQSPDSQLKE 337 (704)
Q Consensus 266 ~~~~~~~~~-~~~~l~~L~~ll~~~~~----~~~~~a~~~L~~l~~---~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~ 337 (704)
++..+..+. ..|+++.|+.+|.+++. +++..|+++|.|++. .+++++..+.+.|+++.|+.+|++++..+++
T Consensus 202 ~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~ 281 (354)
T 3nmw_A 202 CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVS 281 (354)
T ss_dssp CHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHH
T ss_pred ChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHH
Confidence 666677777 68999999999987654 489999999999986 5778888999999999999999999999999
Q ss_pred HHHHHHHHhhc-CCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCc
Q 005282 338 MSAFALGRLAQ-DTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNED 392 (704)
Q Consensus 338 ~a~~~L~~l~~-~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 392 (704)
.|+++|+|++. +++.+..+.+.|++++|+++++++++.+++.|+++|.+|+.+..
T Consensus 282 ~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 282 NACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 99999999995 56677788999999999999999999999999999999997543
No 26
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=7.4e-30 Score=258.47 Aligned_cols=281 Identities=20% Similarity=0.200 Sum_probs=242.2
Q ss_pred HHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcC-CCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHc-
Q 005282 66 AAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQL-TNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDT- 142 (704)
Q Consensus 66 ~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~-~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~- 142 (704)
.....|+++|.+++.++++++.+++.|+++.|+.+|..+... .......+++++..|+++|.||+ ++++.+..+...
T Consensus 47 ~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~ 126 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK 126 (354)
T ss_dssp GTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 345689999999999999999999999999999999632000 00000013579999999999999 666688777654
Q ss_pred CCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhc-ChhhhhhhhccCCcHHHHHHh-cCCCHHHHHHHHHHHHHh
Q 005282 143 GALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHE-NANIKTRVRVEDGIPPLVELL-KFVDVKVQRAAAGALRTL 220 (704)
Q Consensus 143 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll-~~~~~~~~~~a~~~L~~l 220 (704)
|++|.|+++|++.+. ++++.++++|+|++.. ++..+..+.+.|++|.|+++| +++++.+++.|+.+|++|
T Consensus 127 GaIp~LV~LL~s~~~--------~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nL 198 (354)
T 3nmw_A 127 GCMRALVAQLKSESE--------DLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNL 198 (354)
T ss_dssp HHHHHHHHGGGCSCH--------HHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHCCCCH--------HHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 559999999997654 9999999999999974 677899999999999999975 578899999999999999
Q ss_pred ccCCchhhHHhH-hcCChHHHHHhhcCCCH----HHHHHHHHHHHHHhc---CChhhHHHHHHcCCHHHHHHHhcCCChh
Q 005282 221 AFKNDENKKLIV-ECNALPTLVLMLRSEDA----SVHFEAVGVIGNLVH---SSPSIKKEVILAGALQPVIGLLSSSCSE 292 (704)
Q Consensus 221 ~~~~~~~~~~~~-~~~~i~~L~~lL~~~~~----~v~~~a~~~L~~l~~---~~~~~~~~~~~~~~l~~L~~ll~~~~~~ 292 (704)
+.+.++++..+. ..|+++.|+++|.++++ .+++.|+++|.|++. .+++.++.+.+.|+++.|+.+|.+++..
T Consensus 199 s~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~ 278 (354)
T 3nmw_A 199 SAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLT 278 (354)
T ss_dssp HTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHH
T ss_pred HccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChH
Confidence 976778888887 78999999999987654 599999999999997 5788899999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhh
Q 005282 293 SKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQA 354 (704)
Q Consensus 293 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 354 (704)
++..|+++|+|++..+++++..+.+.|+++.|+.++++++..+++.|+++|.||+.+.+.+.
T Consensus 279 v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~~ 340 (354)
T 3nmw_A 279 IVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKY 340 (354)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999997788889999999999999999999999999999999999998866543
No 27
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=99.96 E-value=1.5e-28 Score=239.95 Aligned_cols=163 Identities=21% Similarity=0.332 Sum_probs=145.8
Q ss_pred hHHhhhcCCCcccEEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCC--CCCCCceEcCCCCHHHHHHHHHHHhcCccccC
Q 005282 525 LGEQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYK--EKNAKDVEIPNIRWNVFELMMRFIYTGNVDVS 602 (704)
Q Consensus 525 l~~~~~~~~~~~d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~--e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~ 602 (704)
-.+.++.++.++||+|.++|+.|+|||.||+++|+||++||.+++. |+....|.++++++++|+.+++|+|||.+.++
T Consensus 21 ~l~~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f~~ll~~~Yt~~~~i~ 100 (256)
T 3hve_A 21 ALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLN 100 (256)
T ss_dssp HHHTCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCCHHHHHHHHHHHHHSCCCCC
T ss_pred HHHHHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCCHHHHHHHHhhccCCCCccc
Confidence 3478899999999999999999999999999999999999999887 67778999999999999999999999999999
Q ss_pred hhhHHHHHHHHhhhChHhHHHHHHHHHHhhCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCChhhhccchhcH
Q 005282 603 VDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNATTLKQSCILFILEKFDKMRNKPWFFRLIRCVL 682 (704)
Q Consensus 603 ~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~L~~~~~ 682 (704)
.+++.+++.+|++|+++.|++.|+++|.+.++++||+.++.+|..|+++.|.+.|.+|+.+||..+..+++|.+||.+.+
T Consensus 101 ~~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L~~~~l 180 (256)
T 3hve_A 101 EDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIGIRDFALHYCLHHVHYLATEYLETHFRDVSSTEEFLELSPQKL 180 (256)
T ss_dssp -CCHHHHHHHHHHHTCHHHHHHHHHHHHHTCCSSTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTCHHHHSSCHHHH
T ss_pred HhHHHHHHHHHHHHChHHHHHHHHHHHHhhCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhCCcchhcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred HHHHH
Q 005282 683 PEIRN 687 (704)
Q Consensus 683 ~~l~~ 687 (704)
.++++
T Consensus 181 ~~lL~ 185 (256)
T 3hve_A 181 KEVIS 185 (256)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 77765
No 28
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.95 E-value=8.7e-28 Score=219.73 Aligned_cols=147 Identities=35% Similarity=0.483 Sum_probs=136.6
Q ss_pred HhhhcCCCcccEEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhcCccccChhhH
Q 005282 527 EQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVDIA 606 (704)
Q Consensus 527 ~~~~~~~~~~d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~ 606 (704)
..+++++.++||+|.++|+.|+|||.||+++|+||++||.++|.|+....|.++++++++|+.+|+|+|+|++.++.+++
T Consensus 26 ~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~l~~~Yt~~~~~~~~~~ 105 (172)
T 3htm_A 26 GGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMA 105 (172)
T ss_dssp HHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEECSSCHHHHHHHHHHHHHSCCTTGGGTH
T ss_pred HHHHhCCCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEecCCCHHHHHHHHHHHhCCCCCCcHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhChHhHHHHHHHHHHhhCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCChh
Q 005282 607 QDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNATTLKQSCILFILEKFDKMRNKPW 673 (704)
Q Consensus 607 ~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~ 673 (704)
.+++.+|++|+++.|++.|+++|.+.++++||+.++.+|..|+++.|.+.|.+||.+||.++..+++
T Consensus 106 ~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~~~v~~s~~ 172 (172)
T 3htm_A 106 DDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHATDVLETSG 172 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999987653
No 29
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=99.95 E-value=4.3e-28 Score=239.67 Aligned_cols=162 Identities=23% Similarity=0.412 Sum_probs=146.5
Q ss_pred HHhhhcCCCcccEEEEEc---CeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcC------CCCHHHHHHHHHHHhc
Q 005282 526 GEQFVNNPTLSDVTFVVE---GKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIP------NIRWNVFELMMRFIYT 596 (704)
Q Consensus 526 ~~~~~~~~~~~d~~~~~~---~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~------~~~~~~~~~~l~~~Y~ 596 (704)
.+.++.++.+|||+|.++ |+.|+|||.||+++|+||++||.++|+|+....|.++ ++++++|..+++|+||
T Consensus 23 l~~l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Yt 102 (279)
T 3i3n_A 23 QNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYT 102 (279)
T ss_dssp HHHHHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHHhhCc
Confidence 367889999999999998 9999999999999999999999999999999999998 8999999999999999
Q ss_pred CccccChhhHHHHHHHHhhhChHhHHHHHHHHHHhhCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCChhhhc
Q 005282 597 GNVDVSVDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNATTLKQSCILFILEKFDKMRNKPWFFR 676 (704)
Q Consensus 597 ~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~ 676 (704)
|.+.++.+++.+++.+|++|+++.|++.|+++|.+.++++||+.++.+|..|+++.|.+.|.+||.+||..+..+++|.+
T Consensus 103 g~~~i~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~ 182 (279)
T 3i3n_A 103 GRIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLAHMYTLSQLALKAADMIRRNFHKVIQDEEFYT 182 (279)
T ss_dssp SEEEEETTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTHHHHTTSSGGGG
T ss_pred CCcccCHHHHHHHHHHHHHHCcHHHHHHHHHHHHHcCCcchHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCcChhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhcHHHHHH
Q 005282 677 LIRCVLPEIRN 687 (704)
Q Consensus 677 L~~~~~~~l~~ 687 (704)
||.+.+.++++
T Consensus 183 L~~~~l~~lL~ 193 (279)
T 3i3n_A 183 LPFHLIRDWLS 193 (279)
T ss_dssp SCHHHHHHHHT
T ss_pred CCHHHHHHHhc
Confidence 98886665543
No 30
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.94 E-value=1e-25 Score=221.12 Aligned_cols=243 Identities=31% Similarity=0.376 Sum_probs=227.6
Q ss_pred CChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHH
Q 005282 92 GAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRR 170 (704)
Q Consensus 92 g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~ 170 (704)
|.++.|+++|.+++. +++..|+++|.+++ .+++.+..+.+.|+++.|+++|++.+. +++..
T Consensus 2 ~~i~~L~~~L~~~~~----------~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~--------~v~~~ 63 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDS----------ETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDS--------EVQKE 63 (252)
T ss_dssp CHHHHHHHHTTCSCH----------HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH--------HHHHH
T ss_pred CcHHHHHHHHcCCCH----------HHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCH--------HHHHH
Confidence 678999999998865 99999999999999 677799999999999999999998654 99999
Q ss_pred HHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHH
Q 005282 171 AADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDAS 250 (704)
Q Consensus 171 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~ 250 (704)
++++|++++.+++..+..+.+.|+++.|+.+++++++.++..++++|++++.++++.+..+.+.|+++.|++++.++++.
T Consensus 64 a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~ 143 (252)
T 4hxt_A 64 AARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSE 143 (252)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHH
Confidence 99999999987799999999999999999999999999999999999999977889999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCC
Q 005282 251 VHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQS 330 (704)
Q Consensus 251 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~ 330 (704)
++..++++|++++..++.....+.+.|+++.|+.++.++++.++..++++|.+++..++.....+.+.|+++.|+.++.+
T Consensus 144 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~ 223 (252)
T 4hxt_A 144 VQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTS 223 (252)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCC
Confidence 99999999999998888888889999999999999999999999999999999998777888889999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhcCCch
Q 005282 331 PDSQLKEMSAFALGRLAQDTHN 352 (704)
Q Consensus 331 ~~~~v~~~a~~~L~~l~~~~~~ 352 (704)
+++.+++.|+++|+|++.....
T Consensus 224 ~~~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 224 TDSEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp SCHHHHHHHHHHHHHHHHTCBC
T ss_pred CcHHHHHHHHHHHHHHHcCCCc
Confidence 9999999999999999976543
No 31
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.93 E-value=4.4e-25 Score=216.50 Aligned_cols=242 Identities=30% Similarity=0.383 Sum_probs=224.0
Q ss_pred CCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhcc
Q 005282 143 GALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAF 222 (704)
Q Consensus 143 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 222 (704)
|+++.|+++|.+++. +++..++++|.+++..+++.+..+.+.|+++.|+.+++++++.++..++++|++++.
T Consensus 2 ~~i~~L~~~L~~~~~--------~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 73 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDS--------ETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 73 (252)
T ss_dssp CHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHcCCCH--------HHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 578999999988764 999999999999998888888999999999999999999999999999999999998
Q ss_pred CCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHH
Q 005282 223 KNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLG 302 (704)
Q Consensus 223 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~ 302 (704)
++++.+..+.+.|+++.++.++.++++.++..++++|++++..++.....+.+.|+++.|+.++.++++.++..++++|+
T Consensus 74 ~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~ 153 (252)
T 4hxt_A 74 GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALA 153 (252)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 77999999999999999999999999999999999999999888888999999999999999999999999999999999
Q ss_pred HHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC-chhhhHHhhCChHHHHHhhcCCChhHHHHHH
Q 005282 303 QFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDT-HNQAGIAQDGGILPLLKLLDSKNGSLQHNAA 381 (704)
Q Consensus 303 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~ 381 (704)
+++..++.....+.+.|+++.|+.++.++++.++..++++|++++.+. ..+..+.+.|+++.|+++++++++.++..|+
T Consensus 154 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~ 233 (252)
T 4hxt_A 154 NIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQ 233 (252)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHH
Confidence 999877777788899999999999999999999999999999999854 4455678889999999999999999999999
Q ss_pred HHHHHcccCCc
Q 005282 382 FALYGLADNED 392 (704)
Q Consensus 382 ~~L~~l~~~~~ 392 (704)
++|.+++....
T Consensus 234 ~~L~~l~~~~~ 244 (252)
T 4hxt_A 234 RALENIKSGGW 244 (252)
T ss_dssp HHHHHHHHTCB
T ss_pred HHHHHHHcCCC
Confidence 99999986443
No 32
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.93 E-value=5.4e-25 Score=215.82 Aligned_cols=239 Identities=25% Similarity=0.348 Sum_probs=220.2
Q ss_pred CChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHH
Q 005282 92 GAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRR 170 (704)
Q Consensus 92 g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~ 170 (704)
...+.++..|++++. +++..|+++|.++. .+++.+..+.+.|+++.|+++|++.+. +++..
T Consensus 12 ~~~~~~~~~L~s~~~----------~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~--------~v~~~ 73 (252)
T 4db8_A 12 SELPQMTQQLNSDDM----------QEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNE--------QILQE 73 (252)
T ss_dssp CSHHHHHHHHHSSCS----------SHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCH--------HHHHH
T ss_pred chHHHHHHHHcCCCH----------HHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCH--------HHHHH
Confidence 457899999999876 89999999998877 677788899999999999999998764 99999
Q ss_pred HHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHH
Q 005282 171 AADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDAS 250 (704)
Q Consensus 171 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~ 250 (704)
++++|++++.+++..+..+.+.|+++.|+.+++++++.++..|+++|++++.+.+.....+.+.|+++.|++++.++++.
T Consensus 74 a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~ 153 (252)
T 4db8_A 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ 153 (252)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHH
Confidence 99999999988899999999999999999999999999999999999999974444338889999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCC
Q 005282 251 VHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQS 330 (704)
Q Consensus 251 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~ 330 (704)
++..++++|++++..++.....+.+.|+++.|+.++.++++.++..|+++|++++..++..+..+.+.|+++.|+.++.+
T Consensus 154 v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~ 233 (252)
T 4db8_A 154 ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH 233 (252)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCC
Confidence 99999999999998888888888999999999999999999999999999999998777888889999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhc
Q 005282 331 PDSQLKEMSAFALGRLAQ 348 (704)
Q Consensus 331 ~~~~v~~~a~~~L~~l~~ 348 (704)
++++++..|+++|+|++.
T Consensus 234 ~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 234 ENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp SSSHHHHTHHHHHHTTC-
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 999999999999999975
No 33
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.93 E-value=1.6e-24 Score=212.44 Aligned_cols=239 Identities=24% Similarity=0.342 Sum_probs=218.1
Q ss_pred CCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhcc
Q 005282 143 GALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAF 222 (704)
Q Consensus 143 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 222 (704)
...+.+...|.+.+. +++..++++|.++...+++.+..+.+.|+++.|+.+++++++.++..|+++|.+++.
T Consensus 12 ~~~~~~~~~L~s~~~--------~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 83 (252)
T 4db8_A 12 SELPQMTQQLNSDDM--------QEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 83 (252)
T ss_dssp CSHHHHHHHHHSSCS--------SHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHcCCCH--------HHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 457889999998876 899999999988765567778889999999999999999999999999999999998
Q ss_pred CCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHH
Q 005282 223 KNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLG 302 (704)
Q Consensus 223 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~ 302 (704)
++++.+..+.+.|+++.|+.+|.++++.++..|+++|++++...+.....+.+.|+++.|+.++.++++.++..++++|+
T Consensus 84 ~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~ 163 (252)
T 4db8_A 84 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 163 (252)
T ss_dssp SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999886655578889999999999999999999999999999
Q ss_pred HHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC-chhhhHHhhCChHHHHHhhcCCChhHHHHHH
Q 005282 303 QFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDT-HNQAGIAQDGGILPLLKLLDSKNGSLQHNAA 381 (704)
Q Consensus 303 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~ 381 (704)
+++..++.....+.+.|+++.|+.++.++++.++..|+++|++++.+. ..+..+.+.|+++.|++++.++++.++..|+
T Consensus 164 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~ 243 (252)
T 4db8_A 164 NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQ 243 (252)
T ss_dssp HHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHH
T ss_pred HHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHH
Confidence 999877777888889999999999999999999999999999999654 4456678889999999999999999999999
Q ss_pred HHHHHccc
Q 005282 382 FALYGLAD 389 (704)
Q Consensus 382 ~~L~~l~~ 389 (704)
++|.+++.
T Consensus 244 ~~L~~l~~ 251 (252)
T 4db8_A 244 EALEKLQS 251 (252)
T ss_dssp HHHHTTC-
T ss_pred HHHHHHhc
Confidence 99999975
No 34
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.1e-24 Score=234.31 Aligned_cols=385 Identities=14% Similarity=0.121 Sum_probs=294.1
Q ss_pred HHHHHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHH-HHHHcCCcH
Q 005282 69 KTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQ-IIVDTGALP 146 (704)
Q Consensus 69 ~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~-~~~~~g~l~ 146 (704)
..++.-+.+.++ +... +..+..+.++.|.+++++. +++..|+-+|.++...+.... .+. ...+
T Consensus 273 ~~a~L~lLsaACi~~~c-R~~I~~~~~~~L~~~l~~~------------~ir~lAavvL~KL~~~~~~~~~si~--~La~ 337 (778)
T 3opb_A 273 TKELLRLLSSACIDETM-RTYITENYLQLLERSLNVE------------DVQIYSALVLVKTWSFTKLTCINLK--QLSE 337 (778)
T ss_dssp HHHHHHHHHHHCCSHHH-HHHHHHHHHHHHHHHTTSG------------GGHHHHHHHHHHHTGGGTCTTCCHH--HHHH
T ss_pred HHHHHHHHHHHhCCcHH-HHHHHHhHHHHHHHHhccH------------HHHHHHHHHHHHHhcCCCCCcCcHH--HHHH
Confidence 455666666666 5555 4445778889999999652 689999999999994332211 111 1334
Q ss_pred HHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhcc-CCcHHHHHHhcC-CCHHHHHHHHHHHHHhccCC
Q 005282 147 HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVE-DGIPPLVELLKF-VDVKVQRAAAGALRTLAFKN 224 (704)
Q Consensus 147 ~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~ 224 (704)
.+.+.|.++.. +-+..|+..|+.++. .+..+..+... ++++.|+.+++. .+..+...++.++.|++...
T Consensus 338 ~~~~~L~~~~~--------~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~ 408 (778)
T 3opb_A 338 IFINAISRRIV--------PKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLP 408 (778)
T ss_dssp HHHHHTTTCCH--------HHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCC
T ss_pred HHHHHHhcCCc--------cHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCC
Confidence 55555554432 459999999999997 56666666664 559999999994 78889999999999998733
Q ss_pred ch--------------------------------------hhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q 005282 225 DE--------------------------------------NKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSS 266 (704)
Q Consensus 225 ~~--------------------------------------~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 266 (704)
+. ++..+.+.|+++.|+.++.++++.++..++++|.+++..
T Consensus 409 ~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d- 487 (778)
T 3opb_A 409 EEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS- 487 (778)
T ss_dssp CCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-
T ss_pred cccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-
Confidence 31 345677889999999999999999999999999999965
Q ss_pred hhhHHHHHHcCCHHHHHHHhcCCChh---HHHHHHHHHHHHhccCCcchHHHHh---cCChHHHHHhhCC-CCH------
Q 005282 267 PSIKKEVILAGALQPVIGLLSSSCSE---SKREAALLLGQFAAADSNSKVHIVQ---RGAVRPLIEMLQS-PDS------ 333 (704)
Q Consensus 267 ~~~~~~~~~~~~l~~L~~ll~~~~~~---~~~~a~~~L~~l~~~~~~~~~~~~~---~~~i~~L~~ll~~-~~~------ 333 (704)
+..+..+++.|+++.|+.++.+.... .+..|+.+|.+++...+... .+.. .|++++|+.+|.. +..
T Consensus 488 ~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~-~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~ 566 (778)
T 3opb_A 488 KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL-IFKKYSALNAIPFLFELLPRSTPVDDNPLH 566 (778)
T ss_dssp GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH-HSSSSCSTTHHHHHHHTSCCSSSCSSCC--
T ss_pred HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH-HcCCCccccchHHHHHHcCCCCCccccccc
Confidence 88899999999999999999877544 78999999999985333221 1111 3889999999983 211
Q ss_pred -------HHHHHHHHHHHHhhcCCc-----hhhhHHhh-CChHHHHHhhcCCChhHHHHHHHHHHHcccCCchh-hHHHh
Q 005282 334 -------QLKEMSAFALGRLAQDTH-----NQAGIAQD-GGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNV-ADLVR 399 (704)
Q Consensus 334 -------~v~~~a~~~L~~l~~~~~-----~~~~~~~~-~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-~~l~~ 399 (704)
.-+..|+.+|.||+..++ .+..++.. |+++.|..++.+.+..+|++|+++++||+.+++.. ..+..
T Consensus 567 ~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~ 646 (778)
T 3opb_A 567 NDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFN 646 (778)
T ss_dssp -CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSC
T ss_pred ccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHh
Confidence 126689999999999873 36668874 99999999999999999999999999999988764 34432
Q ss_pred hCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhcc-CCCccceeeecC-CcH
Q 005282 400 VGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLC-APDDCKTIFIDN-NGL 477 (704)
Q Consensus 400 ~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~-~~~~~~~~l~~~-~~i 477 (704)
.+. +. ..+-++.|+.++.+++..+|.+|+|+|++++ .++.....+++. +|+
T Consensus 647 ~~~-~~--------------------------~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi 699 (778)
T 3opb_A 647 LEN-PQ--------------------------SLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELI 699 (778)
T ss_dssp CSS-HH--------------------------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHH
T ss_pred hcC-ch--------------------------hhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccH
Confidence 211 00 0012567899999999999999999999995 466555555665 899
Q ss_pred HHHHHHHhh--cchhhhhhHHHHHHHHhhhc
Q 005282 478 ELLLGLLES--TSVKQREESSVALYKLATKA 506 (704)
Q Consensus 478 ~~L~~ll~~--~~~~~~~~a~~~L~~L~~~~ 506 (704)
+.++.++++ ++++++.+++.++.||+...
T Consensus 700 ~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~ 730 (778)
T 3opb_A 700 ENAIQVFADQIDDIELRQRLLMLFFGLFEVI 730 (778)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHhh
Confidence 999999998 89999999999999999744
No 35
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.92 E-value=5.2e-25 Score=221.76 Aligned_cols=147 Identities=35% Similarity=0.483 Sum_probs=131.3
Q ss_pred HhhhcCCCcccEEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhcCccccChhhH
Q 005282 527 EQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVDIA 606 (704)
Q Consensus 527 ~~~~~~~~~~d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~ 606 (704)
..++.++.++||+|.++|+.|+|||.||+++||||++||.+++.|+....|.++++++++|+.+|+|+|+|.++++.+++
T Consensus 166 ~~l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~~~~ 245 (312)
T 3hqi_A 166 GGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMA 245 (312)
T ss_dssp HHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSCHHHHHHHHHHHHHSCCTTHHHHH
T ss_pred HHHHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCCHHHHHHHHHhhcCCCCCChHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhChHhHHHHHHHHHHhhCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCChh
Q 005282 607 QDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNATTLKQSCILFILEKFDKMRNKPW 673 (704)
Q Consensus 607 ~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~ 673 (704)
.+++.+|++|+++.|+..|+++|.+.++.+|+..++.+|..|++..|++.|++||..||.++..+++
T Consensus 246 ~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~v~~s~g 312 (312)
T 3hqi_A 246 DDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHATDVLETSG 312 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999987653
No 36
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=99.91 E-value=3e-25 Score=196.48 Aligned_cols=129 Identities=38% Similarity=0.548 Sum_probs=99.3
Q ss_pred HhhhcCCCcccEEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhcCccccChhhH
Q 005282 527 EQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVDIA 606 (704)
Q Consensus 527 ~~~~~~~~~~d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~ 606 (704)
..+++++.++||++.++|+.|+|||.||+++|+||++||.+++.|+....|.+++++++.|+.+|+|+|+|.+.++.+++
T Consensus 17 ~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~ 96 (145)
T 4eoz_A 17 GGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMA 96 (145)
T ss_dssp HHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEECSSCHHHHHHHHHHHHHSCCTTGGGTH
T ss_pred HHHHhCCCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEecCCCHHHHHHHHHhhccCccCCcHHHH
Confidence 67888999999999999999999999999999999999999999988889999999999999999999999999999999
Q ss_pred HHHHHHHhhhChHhHHHHHHHHHHhhCChhhHHHHHHHHHHcCCHHHHH
Q 005282 607 QDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNATTLKQ 655 (704)
Q Consensus 607 ~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~~~~a~~~~~~~L~~ 655 (704)
.+++.+|++|+++.|++.|+++|.+.++.+||+.++.+|..|++++|++
T Consensus 97 ~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~l~~A~~~~~~~Lk~ 145 (145)
T 4eoz_A 97 DDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKT 145 (145)
T ss_dssp HHHHHHHHHTTCHHHHHHHHCC---------------------------
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHhcC
Confidence 9999999999999999999999999999999999999999999998863
No 37
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.3e-22 Score=216.40 Aligned_cols=380 Identities=15% Similarity=0.127 Sum_probs=289.9
Q ss_pred HHHHHHHHhhc-ChhHHHHHH-hCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHH
Q 005282 70 TASHALVEFAK-NEEIVSLIV-DNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPH 147 (704)
Q Consensus 70 ~a~~~L~~l~~-~~~~~~~l~-~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~ 147 (704)
.++.++..+-. .|+.+..+. ..|.++.+.+.+.+... ..+...++..|...|.++.+|..+. .++++.
T Consensus 231 ~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~---------~~~~~a~L~lLsaACi~~~cR~~I~-~~~~~~ 300 (778)
T 3opb_A 231 IIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQD---------LQFTKELLRLLSSACIDETMRTYIT-ENYLQL 300 (778)
T ss_dssp HHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCC---------HHHHHHHHHHHHHHCCSHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccc---------hHHHHHHHHHHHHHhCCcHHHHHHH-HhHHHH
Confidence 34455555444 476666666 66888999988866543 4677777777777779999988885 567799
Q ss_pred HHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchh
Q 005282 148 LVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDEN 227 (704)
Q Consensus 148 L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 227 (704)
|.+.+++ . .++..|+-+|..+......... --....+.+.+++.+++.+-+..|+..|++++. .++.
T Consensus 301 L~~~l~~--~--------~ir~lAavvL~KL~~~~~~~~~--si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl-~~~V 367 (778)
T 3opb_A 301 LERSLNV--E--------DVQIYSALVLVKTWSFTKLTCI--NLKQLSEIFINAISRRIVPKVEMSVEALAYLSL-KASV 367 (778)
T ss_dssp HHHHTTS--G--------GGHHHHHHHHHHHTGGGTCTTC--CHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTT-SSHH
T ss_pred HHHHhcc--H--------HHHHHHHHHHHHHhcCCCCCcC--cHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhC-CHHH
Confidence 9988864 2 6788899999888753322111 112245667777877777779999999999997 7788
Q ss_pred hHHhHh-cCChHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChh-------------------------------------
Q 005282 228 KKLIVE-CNALPTLVLMLRS-EDASVHFEAVGVIGNLVHSSPS------------------------------------- 268 (704)
Q Consensus 228 ~~~~~~-~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~------------------------------------- 268 (704)
++.+.+ .+.++.|++++++ .+..+...++.+|.|++...+.
T Consensus 368 Ke~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~ 447 (778)
T 3opb_A 368 KIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILL 447 (778)
T ss_dssp HHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHH
Confidence 888775 5569999999995 7889999999999999974331
Q ss_pred -hHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHH---HHHHHHHHHH
Q 005282 269 -IKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQ---LKEMSAFALG 344 (704)
Q Consensus 269 -~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~---v~~~a~~~L~ 344 (704)
.+..+.+.|+++.|+.++.++++.++..++++|.+++. +++++..+++.|+++.|+.++.+.... .+..|+.+|.
T Consensus 448 ~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~-d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALA 526 (778)
T 3opb_A 448 FNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITR-SKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALT 526 (778)
T ss_dssp HHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHT-SGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence 23455678999999999999999999999999999985 789999999999999999999887544 8999999999
Q ss_pred HhhcCCchhhhHHh---hCChHHHHHhhcC-CCh-------------hHHHHHHHHHHHcccCCc-----hhhHHHhh-C
Q 005282 345 RLAQDTHNQAGIAQ---DGGILPLLKLLDS-KNG-------------SLQHNAAFALYGLADNED-----NVADLVRV-G 401 (704)
Q Consensus 345 ~l~~~~~~~~~~~~---~~~~~~L~~ll~~-~~~-------------~v~~~a~~~L~~l~~~~~-----~~~~l~~~-g 401 (704)
+++...+....+.. .|++++|+.+|.. ... --+..|+.+|.||+..++ .+..++++ |
T Consensus 527 rLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~g 606 (778)
T 3opb_A 527 RMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKV 606 (778)
T ss_dssp HHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHH
T ss_pred HHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcC
Confidence 99966554433211 3889999999973 111 127799999999998763 35666663 4
Q ss_pred CcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCccc-eeeecC------
Q 005282 402 GVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCK-TIFIDN------ 474 (704)
Q Consensus 402 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-~~l~~~------ 474 (704)
+ ++.|..++.++++.++.+|+++++||+.++... ..+...
T Consensus 607 a---------------------------------~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~ 653 (778)
T 3opb_A 607 Y---------------------------------WSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSL 653 (778)
T ss_dssp H---------------------------------HHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHH
T ss_pred H---------------------------------HHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhh
Confidence 4 456778888899999999999999998777653 222221
Q ss_pred CcHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282 475 NGLELLLGLLESTSVKQREESSVALYKLATKA 506 (704)
Q Consensus 475 ~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 506 (704)
++++.|+.++.+++.++|++|+++|.+++...
T Consensus 654 ~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~ 685 (778)
T 3opb_A 654 RNFNILVKLLQLSDVESQRAVAAIFANIATTI 685 (778)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC
Confidence 24889999999999999999999999996533
No 38
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.89 E-value=3.9e-22 Score=189.40 Aligned_cols=200 Identities=26% Similarity=0.372 Sum_probs=184.9
Q ss_pred hccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhh
Q 005282 190 RVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSI 269 (704)
Q Consensus 190 ~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 269 (704)
...++.+.|..+++++++.++..|+++|.+++.++++.+..+.+.|+++.|+.+|.++++.++..|+++|++++..++..
T Consensus 9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence 34578899999999999999999999999999878899999999999999999999999999999999999999888888
Q ss_pred HHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q 005282 270 KKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQD 349 (704)
Q Consensus 270 ~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 349 (704)
+..+.+.|+++.|+.+|.++++.++..|+++|+|++..++.....+.+.|+++.|+.+++++++.++..|+++|++++..
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999987777778888999999999999999999999999999999987
Q ss_pred -CchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHccc
Q 005282 350 -THNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD 389 (704)
Q Consensus 350 -~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 389 (704)
++.+..+.+.|+++.|++++.++++.+++.|+++|.+++.
T Consensus 169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 5566677888999999999999999999999999999975
No 39
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.89 E-value=7.5e-22 Score=187.43 Aligned_cols=200 Identities=24% Similarity=0.332 Sum_probs=186.6
Q ss_pred HcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHh
Q 005282 141 DTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTL 220 (704)
Q Consensus 141 ~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l 220 (704)
..|..+.|..+|++.+. +++..|+++|.+++..++..+..+.+.|+++.|+.+|+++++.++..|+++|+++
T Consensus 10 ~~~~~~~l~~LL~s~~~--------~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l 81 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQ--------QELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 81 (210)
T ss_dssp ---CHHHHHHHTTCSCH--------HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHhcCCCH--------HHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 45788999999987765 9999999999999988888899999999999999999999999999999999999
Q ss_pred ccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHH
Q 005282 221 AFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALL 300 (704)
Q Consensus 221 ~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~ 300 (704)
+.+++..+..+.+.|+++.|+.+|.++++.++..|+++|++++..++.....+.+.|+++.|+.++.+++..++..|+++
T Consensus 82 ~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~a 161 (210)
T 4db6_A 82 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA 161 (210)
T ss_dssp TTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 98788999999999999999999999999999999999999998888888888999999999999999999999999999
Q ss_pred HHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 005282 301 LGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQ 348 (704)
Q Consensus 301 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 348 (704)
|.+++..++..+..+.+.|+++.|+.++.++++.+++.|+++|.+++.
T Consensus 162 L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 162 LSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 999998778888889999999999999999999999999999999985
No 40
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.88 E-value=1.2e-22 Score=169.59 Aligned_cols=104 Identities=28% Similarity=0.546 Sum_probs=94.0
Q ss_pred hhcCCCcccEEEEEcC----eEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhcCccccChh
Q 005282 529 FVNNPTLSDVTFVVEG----KQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVD 604 (704)
Q Consensus 529 ~~~~~~~~d~~~~~~~----~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~ 604 (704)
+++++.++||++.++| +.|+|||.||+++|+||++||.++|.|+. ..|.++++++++|+.+|+|+|+|.+.++.+
T Consensus 2 l~~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-~~i~l~~~~~~~f~~~l~~iYt~~~~~~~~ 80 (109)
T 2vkp_A 2 MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-SEIHIPDVEPAAFLILLKYMYSDEIDLEAD 80 (109)
T ss_dssp CTTCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-CEEEETTSCHHHHHHHHHHHHHCCCCCCTT
T ss_pred cccCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-CeEEeCCCCHHHHHHHHHHHcCCCccCCHH
Confidence 6788999999999988 89999999999999999999999999988 899999999999999999999999999999
Q ss_pred hHHHHHHHHhhhChHhHHHHHHHHHHhhC
Q 005282 605 IAQDLLRAADQYLLEGLKRLCEYSIAQII 633 (704)
Q Consensus 605 ~~~~ll~~A~~~~~~~l~~~c~~~l~~~~ 633 (704)
++.+++.+|++|+++.|++.|+++|.+++
T Consensus 81 ~~~~ll~~A~~~~~~~L~~~c~~~l~~~l 109 (109)
T 2vkp_A 81 TVLATLYAAKKYIVPALAKACVNFLETSL 109 (109)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhC
Confidence 99999999999999999999999998753
No 41
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.88 E-value=2.6e-21 Score=190.42 Aligned_cols=227 Identities=21% Similarity=0.193 Sum_probs=188.6
Q ss_pred hhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHh-hccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHH
Q 005282 62 ETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVE-HLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQII 139 (704)
Q Consensus 62 ~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~-lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~ 139 (704)
+.+...+..|+..|.++..+.++...+.+.|+++.|+. +|.+++. +++..|+|+|++++ +++.+++.+
T Consensus 51 ~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~----------~vr~~Aa~~Lg~ia~~n~~~~~~v 120 (296)
T 1xqr_A 51 AADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAA----------GLRWRAAQLIGTCSQNVAAIQEQV 120 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSH----------HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCH----------HHHHHHHHHHHHHHhCCHHHHHHH
Confidence 34456788999999999999889899999999999999 9998765 99999999999999 789999999
Q ss_pred HHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHH
Q 005282 140 VDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRT 219 (704)
Q Consensus 140 ~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~ 219 (704)
++.|+++.|+.+|++..+ ..+++.|+|+|++++.+++.....+...|+++.|+.+|+++++.++..|+|+|.+
T Consensus 121 v~~g~l~~Ll~LL~~~~~-------~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~ 193 (296)
T 1xqr_A 121 LGLGALRKLLRLLDRDAC-------DTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQN 193 (296)
T ss_dssp HHTTHHHHHHHHHHHCSC-------HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHccCCC-------HHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 999999999999987432 2899999999999998888888888889999999999999999999999999999
Q ss_pred hccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHc-CCHHH----HHHHhc-CC-Chh
Q 005282 220 LAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILA-GALQP----VIGLLS-SS-CSE 292 (704)
Q Consensus 220 l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~l~~----L~~ll~-~~-~~~ 292 (704)
++.++++.+..+++.|+++.|+.+|.++++.++..++++|++|+...+......... ..+.. -.+-++ .. +.+
T Consensus 194 L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e 273 (296)
T 1xqr_A 194 LLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQE 273 (296)
T ss_dssp HHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHH
T ss_pred HHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHH
Confidence 998888999999999999999999999999999999999999998754433322221 11211 122333 22 345
Q ss_pred HHHHHHHHHHHHh
Q 005282 293 SKREAALLLGQFA 305 (704)
Q Consensus 293 ~~~~a~~~L~~l~ 305 (704)
+...+...+.++.
T Consensus 274 ~~~~~~~il~~~f 286 (296)
T 1xqr_A 274 ELEFCEKLLQTCF 286 (296)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHc
Confidence 5666666666554
No 42
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=99.88 E-value=2e-22 Score=171.25 Aligned_cols=104 Identities=27% Similarity=0.395 Sum_probs=96.1
Q ss_pred HHhhhcCCCcccEEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhcCccccChhh
Q 005282 526 GEQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVDI 605 (704)
Q Consensus 526 ~~~~~~~~~~~d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~ 605 (704)
.+++++++.++||++.++|+.|+|||.||+++|+||++||.++|.|+....|.++++++++|+.+++|+|+|.+.++.++
T Consensus 16 l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~ll~~~Yt~~~~~~~~~ 95 (120)
T 2if5_A 16 LNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYTATLTVSTAN 95 (120)
T ss_dssp HHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECCSSCHHHHHHHHHHHHHSCCCCCGGG
T ss_pred HHHHHhcCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeCCCCHHHHHHHHHHHcCCCCccCHHH
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhChHhHHHHHHHHH
Q 005282 606 AQDLLRAADQYLLEGLKRLCEYSI 629 (704)
Q Consensus 606 ~~~ll~~A~~~~~~~l~~~c~~~l 629 (704)
+.+++.+|++|++++|++.|+++|
T Consensus 96 ~~~ll~~A~~~~i~~L~~~C~~~L 119 (120)
T 2if5_A 96 VGDILSAARLLEIPAVSHVCADLL 119 (120)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHh
Confidence 999999999999999999999987
No 43
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=99.87 E-value=6.4e-22 Score=169.92 Aligned_cols=105 Identities=25% Similarity=0.411 Sum_probs=100.7
Q ss_pred HHhhhcCCCcccEEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEc-CCCCHHHHHHHHHHHhcCccccChh
Q 005282 526 GEQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEI-PNIRWNVFELMMRFIYTGNVDVSVD 604 (704)
Q Consensus 526 ~~~~~~~~~~~d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l-~~~~~~~~~~~l~~~Y~~~~~~~~~ 604 (704)
.++++.++.++||+|.++|+.|+|||.||+++|+||++||.+++.| ....|.+ +++++++|+.+|+|+|+|.+.++.+
T Consensus 20 l~~l~~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e-~~~~i~l~~~~~~~~f~~ll~~~Ytg~~~~~~~ 98 (127)
T 1r29_A 20 LNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKR-NLSVINLDPEINPEGFNILLDFMYTSRLNLREG 98 (127)
T ss_dssp HHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTT-TCSEEECCTTSCHHHHHHHHHHHHHSCCCCCTT
T ss_pred HHHHHhcCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCccC-CCCEEEeCCCCCHHHHHHHHHHHcCCCcCcCHH
Confidence 3678899999999999999999999999999999999999999998 7789999 8999999999999999999999999
Q ss_pred hHHHHHHHHhhhChHhHHHHHHHHHHh
Q 005282 605 IAQDLLRAADQYLLEGLKRLCEYSIAQ 631 (704)
Q Consensus 605 ~~~~ll~~A~~~~~~~l~~~c~~~l~~ 631 (704)
++.+++.+|++|+++.|++.|+++|.+
T Consensus 99 ~~~~ll~~A~~~~i~~L~~~c~~~l~~ 125 (127)
T 1r29_A 99 NIMAVMATAMYLQMEHVVDTCRKFIKA 125 (127)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 999999999999999999999999975
No 44
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.86 E-value=6.3e-21 Score=187.66 Aligned_cols=225 Identities=16% Similarity=0.123 Sum_probs=188.5
Q ss_pred hHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHH-HHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCC
Q 005282 116 HEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVS-LLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDG 194 (704)
Q Consensus 116 ~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~-lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 194 (704)
.+-+..|+..|.+++.+.++...+.+.|+++.|+. +|.+++. +++..|+|+|++++.+++..+..+++.|+
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~--------~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~ 125 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAA--------GLRWRAAQLIGTCSQNVAAIQEQVLGLGA 125 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCH--------HHHHHHHHHHHHHHhCCHHHHHHHHHCCC
Confidence 36788999999999988889999999999999999 9987654 99999999999999999999999999999
Q ss_pred cHHHHHHhcC-CCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 005282 195 IPPLVELLKF-VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEV 273 (704)
Q Consensus 195 i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 273 (704)
+++|+.+|++ +++.++..|+|+|.+++.+++...+.+.+.|+++.|+.+|++++..++..|+|+|.+++.++++.+..+
T Consensus 126 l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~v 205 (296)
T 1xqr_A 126 LRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTL 205 (296)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHH
Confidence 9999999995 589999999999999998888888889999999999999999999999999999999998888899999
Q ss_pred HHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhc-CCh----HHHHHhhCC-C-CHHHHHHHHHHHHHh
Q 005282 274 ILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQR-GAV----RPLIEMLQS-P-DSQLKEMSAFALGRL 346 (704)
Q Consensus 274 ~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~~i----~~L~~ll~~-~-~~~v~~~a~~~L~~l 346 (704)
++.|+++.|+.+|.+++..++..++.+|++++...+......... ..+ +.-+.-++. . ..++.+.+...+-++
T Consensus 206 v~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~ 285 (296)
T 1xqr_A 206 CSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTC 285 (296)
T ss_dssp HHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999997533322222211 111 111223332 2 356666666666655
Q ss_pred hc
Q 005282 347 AQ 348 (704)
Q Consensus 347 ~~ 348 (704)
..
T Consensus 286 f~ 287 (296)
T 1xqr_A 286 FS 287 (296)
T ss_dssp CC
T ss_pred cC
Confidence 53
No 45
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=99.86 E-value=8e-22 Score=172.38 Aligned_cols=103 Identities=24% Similarity=0.421 Sum_probs=94.7
Q ss_pred HhhhcCCCcccEEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCCC--CCCCceEcCCCCHHHHHHHHHHHhcCccccChh
Q 005282 527 EQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKE--KNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVD 604 (704)
Q Consensus 527 ~~~~~~~~~~d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e--~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~ 604 (704)
+.++.++.+|||+|.++|+.|+|||.||+++|+||++||.+++.+ +....|.++++++++|+.+|+|+|+|.+.++.+
T Consensus 39 ~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~~~~f~~lL~fiYtg~~~i~~~ 118 (144)
T 2ppi_A 39 SSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNED 118 (144)
T ss_dssp HHTTC--CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECCSSCHHHHHHHHHHHTTSCCCCCTT
T ss_pred HHHHhcCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeCCCCHHHHHHHHHHHhCCCCCCCHH
Confidence 678899999999999999999999999999999999999998875 667899999999999999999999999999999
Q ss_pred hHHHHHHHHhhhChHhHHHHHHHHH
Q 005282 605 IAQDLLRAADQYLLEGLKRLCEYSI 629 (704)
Q Consensus 605 ~~~~ll~~A~~~~~~~l~~~c~~~l 629 (704)
++.+++.+|++|++++|++.|+++|
T Consensus 119 ~v~~ll~~A~~l~i~~L~~~C~~~L 143 (144)
T 2ppi_A 119 TIQDVVQAADLLLLTDLKTLCCEFL 143 (144)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHh
Confidence 9999999999999999999999886
No 46
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=99.86 E-value=7.4e-22 Score=171.86 Aligned_cols=109 Identities=25% Similarity=0.366 Sum_probs=103.1
Q ss_pred HhhhcCCCcccEEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcC-CCCHHHHHHHHHHHhcCccccChhh
Q 005282 527 EQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIP-NIRWNVFELMMRFIYTGNVDVSVDI 605 (704)
Q Consensus 527 ~~~~~~~~~~d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~-~~~~~~~~~~l~~~Y~~~~~~~~~~ 605 (704)
++++.++.++||+|.++|+.|+|||.||+++|+||++||.+++.++ ..|.++ ++++++|+.+|+|+|+|.+.++.++
T Consensus 28 ~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~--~~i~l~~~v~~~~~~~lL~~~Ytg~~~i~~~~ 105 (138)
T 2z8h_A 28 NDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAE--LTVTLPEEVTVKGFEPLIQFAYTAKLILSKDN 105 (138)
T ss_dssp HHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCTT--EEEECCTTSCHHHHHHHHHHHHHSCCCCCTTT
T ss_pred HHHHhhCCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCCCC--ceEEeCCCCCHHHHHHHHHHhcCCCcccCHHH
Confidence 6788999999999999999999999999999999999999988764 478895 8999999999999999999999999
Q ss_pred HHHHHHHHhhhChHhHHHHHHHHHHhhCChhh
Q 005282 606 AQDLLRAADQYLLEGLKRLCEYSIAQIISVEN 637 (704)
Q Consensus 606 ~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~ 637 (704)
+.+++.+|++|+++.|++.|+++|.+.++.+|
T Consensus 106 v~~ll~~A~~~~i~~L~~~C~~~l~~~l~~sn 137 (138)
T 2z8h_A 106 VDEVCRCVEFLSVHNIEESCFQFLKFKFLDST 137 (138)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHHHTTCCCSCCC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999888776
No 47
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.85 E-value=9.5e-22 Score=166.28 Aligned_cols=101 Identities=24% Similarity=0.371 Sum_probs=95.1
Q ss_pred HhhhcCCCcccEEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhcCccccChhhH
Q 005282 527 EQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVDIA 606 (704)
Q Consensus 527 ~~~~~~~~~~d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~ 606 (704)
++++.++.++||++.++|+.|+|||.||+++|+||++||.+++ ...|.++++++++|+.+|+|+|||++.++.+++
T Consensus 16 ~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~----~~~i~l~~~~~~~f~~ll~~iYtg~~~~~~~~v 91 (119)
T 3b84_A 16 NKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS----GGSVVLPAGFAEIFGLLLDFFYTGHLALTSGNR 91 (119)
T ss_dssp HHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTT----CCCEEECGGGHHHHHHHHHHHHHSCCCCCTTTH
T ss_pred HHHHhcCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC----CCeEEeCCCCHHHHHHHHHHHcCCCCccCHHHH
Confidence 6788899999999999999999999999999999999999876 468999999999999999999999999999999
Q ss_pred HHHHHHHhhhChHhHHHHHHHHHHh
Q 005282 607 QDLLRAADQYLLEGLKRLCEYSIAQ 631 (704)
Q Consensus 607 ~~ll~~A~~~~~~~l~~~c~~~l~~ 631 (704)
.+++.+|++|++++|++.|+++|.+
T Consensus 92 ~~ll~~A~~~~i~~L~~~C~~~l~~ 116 (119)
T 3b84_A 92 DQVLLAARELRVPEAVELCQSFKPK 116 (119)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHCC--
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 9999999999999999999999865
No 48
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.85 E-value=2.4e-21 Score=164.45 Aligned_cols=103 Identities=25% Similarity=0.407 Sum_probs=96.8
Q ss_pred HHhhhcCCCcccEEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhcCccccChhh
Q 005282 526 GEQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVDI 605 (704)
Q Consensus 526 ~~~~~~~~~~~d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~ 605 (704)
.++++.++.++||++.++|+.|+|||.||+++|+||++||.++ ...|.++++++++|+.+|+|+|+|+++++.++
T Consensus 19 l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~-----~~~i~l~~~~~~~f~~ll~~~Ytg~~~~~~~~ 93 (121)
T 1buo_A 19 ANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN-----SQHYTLDFLSPKTFQQILEYAYTATLQAKAED 93 (121)
T ss_dssp HHHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC-----CSEEEECSSCHHHHHHHHHHHHHSCCCCCGGG
T ss_pred HHHHHhcCCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcCC-----CcEEEeCCCCHHHHHHHHHhhcCCCcCCCHHH
Confidence 3678899999999999999999999999999999999999874 45899999999999999999999999999999
Q ss_pred HHHHHHHHhhhChHhHHHHHHHHHHhhC
Q 005282 606 AQDLLRAADQYLLEGLKRLCEYSIAQII 633 (704)
Q Consensus 606 ~~~ll~~A~~~~~~~l~~~c~~~l~~~~ 633 (704)
+.+++.+|++|++++|++.|+++|.+.|
T Consensus 94 ~~~ll~~A~~~~i~~L~~~c~~~l~~~I 121 (121)
T 1buo_A 94 LDDLLYAAEILEIEYLEEQCLKMLETIQ 121 (121)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999997643
No 49
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.85 E-value=1.5e-21 Score=168.89 Aligned_cols=107 Identities=23% Similarity=0.321 Sum_probs=93.9
Q ss_pred HHhhhcCCCcccEEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhcCccccChhh
Q 005282 526 GEQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVDI 605 (704)
Q Consensus 526 ~~~~~~~~~~~d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~ 605 (704)
.+.++.++.++||+|.++|+.|+|||.||+++|+||++||.+++ ...|.++++++++|+.+|+|+|+|++.++.++
T Consensus 16 l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~----~~~i~l~~~~~~~f~~lL~fiYtg~~~i~~~~ 91 (135)
T 2yy9_A 16 LNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT----GGSVVLPAGFAEIFGLLLDFFYTGHLALTSGN 91 (135)
T ss_dssp HHHHHHTTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC--------CCEEECGGGHHHHHHHHHHHHHSCCCCCTTT
T ss_pred HHHHHhcCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCC----CCeEEeCCCCHHHHHHHHHHHhCCCCCCCHHH
Confidence 36789999999999999999999999999999999999999877 45799999999999999999999999999999
Q ss_pred HHHHHHHHhhhChHhHHHHHHHHHHhhCChh
Q 005282 606 AQDLLRAADQYLLEGLKRLCEYSIAQIISVE 636 (704)
Q Consensus 606 ~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~ 636 (704)
+.+++.+|++|+++.|++.|+++|.+.+...
T Consensus 92 v~~ll~~A~~l~i~~L~~~C~~~l~~~l~~~ 122 (135)
T 2yy9_A 92 RDQVLLAAKELRVPEAVELCQSFQPQTSVGQ 122 (135)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999998766543
No 50
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.85 E-value=4.4e-21 Score=161.73 Aligned_cols=100 Identities=25% Similarity=0.402 Sum_probs=94.2
Q ss_pred HhhhcCCCcccEEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcC--CCCHHHHHHHHHHHhcCccccChh
Q 005282 527 EQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIP--NIRWNVFELMMRFIYTGNVDVSVD 604 (704)
Q Consensus 527 ~~~~~~~~~~d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~--~~~~~~~~~~l~~~Y~~~~~~~~~ 604 (704)
+.++.++.++||+|.++|+.|+|||.||+++|+||++||.++ ....|.++ ++++++|+.+|+|+|+|++.++.+
T Consensus 14 ~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~----~~~~i~l~~~~~~~~~f~~ll~~~Yt~~~~~~~~ 89 (116)
T 2vpk_A 14 NKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRST----SENNVFLDQSQVKADGFQKLLEFIYTGTLNLDSW 89 (116)
T ss_dssp HHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTC----CCSCEECCTTTCCHHHHHHHHHHHHHSCCCCCTT
T ss_pred HHHHhcCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCC----CCCeEEeecCCCCHHHHHHHHHHHcCCCcccCHH
Confidence 678889999999999999999999999999999999999986 34577777 999999999999999999999999
Q ss_pred hHHHHHHHHhhhChHhHHHHHHHHHH
Q 005282 605 IAQDLLRAADQYLLEGLKRLCEYSIA 630 (704)
Q Consensus 605 ~~~~ll~~A~~~~~~~l~~~c~~~l~ 630 (704)
++.+++.+|++|+++.|++.|+++|.
T Consensus 90 ~v~~ll~~A~~~~i~~L~~~C~~~l~ 115 (116)
T 2vpk_A 90 NVKEIHQAADYLKVEEVVTKCKIKME 115 (116)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 99999999999999999999999985
No 51
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.83 E-value=3.2e-20 Score=174.13 Aligned_cols=196 Identities=20% Similarity=0.278 Sum_probs=172.4
Q ss_pred ChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHH
Q 005282 93 AVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRA 171 (704)
Q Consensus 93 ~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a 171 (704)
.+|.++++|.+++. +.+++..|+++|.+++ .+++++..+.+.|++|.|+++|++.+. ++++.|
T Consensus 9 ~i~~lV~lL~s~~~--------~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~--------~vq~~A 72 (233)
T 3tt9_A 9 TLERAVSMLEADHM--------LPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNE--------DVQRAV 72 (233)
T ss_dssp CHHHHHHTCCSSCC--------CHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCH--------HHHHHH
T ss_pred cHHHHHHHhCCCCc--------hHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCH--------HHHHHH
Confidence 57999999999864 4478999999999999 899999999999999999999998654 999999
Q ss_pred HHHHHHhhhcChhhhhhhhccCCcHHHHHHhc-CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc-----
Q 005282 172 ADAITNLAHENANIKTRVRVEDGIPPLVELLK-FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR----- 245 (704)
Q Consensus 172 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~----- 245 (704)
+|+|.|++.++++++..+.+.|++|.|+++|+ +++.++++.++.+|++|+. .+.++..+.+. +++.|+.++.
T Consensus 73 a~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~-~~~~k~~i~~~-~i~~Lv~ll~~p~sG 150 (233)
T 3tt9_A 73 CGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS-NDKLKNLMITE-ALLTLTENIIIPFSG 150 (233)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SGGGHHHHHHH-HHHHHCCCCCHHHHC
T ss_pred HHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc-ChhhHHHHHhc-cHHHHHHHHhccccC
Confidence 99999999888999999999999999999998 5799999999999999996 77888888764 6899988653
Q ss_pred -----------CCCHHHHHHHHHHHHHHhcCChhhHHHHHHc-CCHHHHHHHhcCC------ChhHHHHHHHHHHHHhc
Q 005282 246 -----------SEDASVHFEAVGVIGNLVHSSPSIKKEVILA-GALQPVIGLLSSS------CSESKREAALLLGQFAA 306 (704)
Q Consensus 246 -----------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~l~~L~~ll~~~------~~~~~~~a~~~L~~l~~ 306 (704)
..++.+++.|..+|.|++..+++.++.+.+. |+++.|+.+++.. +...++.|+.+|.|++.
T Consensus 151 ~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 151 WPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp CCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred CcccccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 1367999999999999998878889989876 6689999999742 55679999999999974
No 52
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.83 E-value=5.4e-20 Score=172.55 Aligned_cols=195 Identities=17% Similarity=0.204 Sum_probs=169.4
Q ss_pred ChHHHHHhhcCCCH--HHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchH
Q 005282 236 ALPTLVLMLRSEDA--SVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKV 313 (704)
Q Consensus 236 ~i~~L~~lL~~~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 313 (704)
.++.++++|+++++ .++..++++|.+++..++..+..+.+.|+++.|+.+|.+++++++..|+++|.|++..+++++.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 58999999999888 8999999999999988888999999999999999999999999999999999999987788999
Q ss_pred HHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhc----------------CCChhH
Q 005282 314 HIVQRGAVRPLIEMLQ-SPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLD----------------SKNGSL 376 (704)
Q Consensus 314 ~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~----------------~~~~~v 376 (704)
.+.+.|+++.|+.+|+ +++.++++.|+.+|+||+..+.++..+.+. ++++|++++. ..++++
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHHH
Confidence 9999999999999998 578999999999999999999988888864 6889887652 136689
Q ss_pred HHHHHHHHHHccc-CCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhc------cHH
Q 005282 377 QHNAAFALYGLAD-NEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVA------DRA 449 (704)
Q Consensus 377 ~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~------~~~ 449 (704)
+++|..+|+||+. ++++++.+.+.+| +++.|+.+++.. +..
T Consensus 168 ~~na~~~L~nLss~~~~~R~~~r~~~G--------------------------------li~~Lv~~l~~~~~~~~~~~k 215 (233)
T 3tt9_A 168 FYNVTGCLRNMSSAGADGRKAMRRCDG--------------------------------LIDSLVHYVRGTIADYQPDDK 215 (233)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHTSTT--------------------------------HHHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCC--------------------------------cHHHHHHHHHhhhhcccchhH
Confidence 9999999999997 6688888988654 234455555542 457
Q ss_pred HHHHHHHHHHhccC
Q 005282 450 VKRRVTLALAHLCA 463 (704)
Q Consensus 450 v~~~a~~~L~~l~~ 463 (704)
.+++|+.+|.||+.
T Consensus 216 ~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 216 ATENCVCILHNLSY 229 (233)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHh
Confidence 89999999999964
No 53
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=99.83 E-value=9.6e-21 Score=160.07 Aligned_cols=99 Identities=25% Similarity=0.362 Sum_probs=93.6
Q ss_pred HhhhcCCCcccEEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhcCccccChhhH
Q 005282 527 EQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVDIA 606 (704)
Q Consensus 527 ~~~~~~~~~~d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~ 606 (704)
++++.++.++||++.++|+.|+|||.||+++|+||++||.++ ...|.++++++++|+.+|+|+|||++.++.+++
T Consensus 19 ~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~-----~~~i~l~~~~~~~f~~ll~~~Ytg~~~i~~~~~ 93 (119)
T 2q81_A 19 NQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQ-----KDVVHLDISNAAGLGQVLEFMYTAKLSLSPENV 93 (119)
T ss_dssp HHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHC-----CSGGGGGGCCHHHHHHHHHHHHHSCCCCCTTTH
T ss_pred HHHHhcCCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcCC-----CCEEEeCCCCHHHHHHHHHHHcCCCCccCHHHH
Confidence 678889999999999999999999999999999999999873 457888999999999999999999999999999
Q ss_pred HHHHHHHhhhChHhHHHHHHHHHH
Q 005282 607 QDLLRAADQYLLEGLKRLCEYSIA 630 (704)
Q Consensus 607 ~~ll~~A~~~~~~~l~~~c~~~l~ 630 (704)
.+++.+|++|++++|++.|+++|.
T Consensus 94 ~~ll~~A~~l~i~~L~~~C~~~l~ 117 (119)
T 2q81_A 94 DDVLAVATFLQMQDIITACHALKS 117 (119)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHh
Confidence 999999999999999999999984
No 54
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=99.82 E-value=2.6e-21 Score=165.56 Aligned_cols=101 Identities=28% Similarity=0.414 Sum_probs=95.6
Q ss_pred HhhhcCCCcccEEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCC-CCHHHHHHHHHHHhcCccccChhh
Q 005282 527 EQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPN-IRWNVFELMMRFIYTGNVDVSVDI 605 (704)
Q Consensus 527 ~~~~~~~~~~d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~-~~~~~~~~~l~~~Y~~~~~~~~~~ 605 (704)
++++.++.++||+|.++|+.|+|||.||+++|+||++||.+++.+ ...|.+++ +++++|+.+|+|+|+|++.++.++
T Consensus 24 ~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e--~~~i~l~~~~~~~~f~~~l~~iYtg~~~~~~~~ 101 (125)
T 3ohu_A 24 NDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKN--DLVVSLPEEVTARGFGPLLQFAYTAKLLLSREN 101 (125)
T ss_dssp HHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCCCS--SCEEECCTTCCHHHHHHHHHHHTTSEEEECTTT
T ss_pred HHHHhcCCccceEEEECCEEEechHHHHHHcCHHHHHHhcCCCCC--CcEEEeCCCCCHHHHHHHHHhHcCCceEECHHH
Confidence 678899999999999999999999999999999999999999877 56899998 999999999999999999999999
Q ss_pred HHHHHHHHhhhChHhHHHHHHHHH
Q 005282 606 AQDLLRAADQYLLEGLKRLCEYSI 629 (704)
Q Consensus 606 ~~~ll~~A~~~~~~~l~~~c~~~l 629 (704)
+.+++.+|++|+++.|++.|++||
T Consensus 102 v~~ll~~A~~l~i~~L~~~C~~~L 125 (125)
T 3ohu_A 102 IREVIRCAEFLRMHNLEDSCFSFL 125 (125)
T ss_dssp HHHHHHHHHHHTBSSCTTSSCCCC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHhC
Confidence 999999999999999999998754
No 55
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=99.82 E-value=7.7e-21 Score=163.38 Aligned_cols=102 Identities=26% Similarity=0.400 Sum_probs=90.1
Q ss_pred HhhhcCCCcccEEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcC-CCCHHHHHHHHHHHhcCccccChhh
Q 005282 527 EQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIP-NIRWNVFELMMRFIYTGNVDVSVDI 605 (704)
Q Consensus 527 ~~~~~~~~~~d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~-~~~~~~~~~~l~~~Y~~~~~~~~~~ 605 (704)
+.++.++.++||++.++|+.|+|||.||+++|+||++||.++ ....|.++ ++++++|+.+|+|+|+|++.++.++
T Consensus 25 ~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~----~~~~i~l~~~~~~~~f~~ll~~iYtg~~~i~~~~ 100 (129)
T 3ga1_A 25 NEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS----RSAVVELPAAVQPQSFQQILSFCYTGRLSMNVGD 100 (129)
T ss_dssp HHHHHTTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHC----CCSEEECCTTCCHHHHHHHHHHHHHSEEECCTTT
T ss_pred HHHHhcCCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcCC----CCCEEEECCCCCHHHHHHHHHHHhCCccccCHHH
Confidence 678889999999999999999999999999999999999986 56789997 8999999999999999999999999
Q ss_pred HHHHHHHHhhhChHhHHHHHHHHHHhh
Q 005282 606 AQDLLRAADQYLLEGLKRLCEYSIAQI 632 (704)
Q Consensus 606 ~~~ll~~A~~~~~~~l~~~c~~~l~~~ 632 (704)
+.+++.+|++|+++.|++.|+++|.+.
T Consensus 101 ~~~ll~~A~~~~i~~l~~~C~~~L~~~ 127 (129)
T 3ga1_A 101 QDLLMYTAGFLQIQEIMEKGTEFFLKV 127 (129)
T ss_dssp HHHHHHHHHHTTBTTSSCC--------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999764
No 56
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=99.82 E-value=3.9e-21 Score=163.86 Aligned_cols=102 Identities=24% Similarity=0.404 Sum_probs=93.3
Q ss_pred HhhhcCCCcccEEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcC-CCCHHHHHHHHHHHhcCccccChhh
Q 005282 527 EQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIP-NIRWNVFELMMRFIYTGNVDVSVDI 605 (704)
Q Consensus 527 ~~~~~~~~~~d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~-~~~~~~~~~~l~~~Y~~~~~~~~~~ 605 (704)
++++.++.++||+|.++|+.|+|||.||+++|+||++||.+++.++ ..|.++ ++++++|+.+|+|+|+|.+.++.++
T Consensus 21 ~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~--~~i~l~~~v~~~~f~~lL~~iYtg~~~i~~~~ 98 (124)
T 2ihc_A 21 NDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGE--LNITLPEEVTVKGFEPLIQFAYTAKLILSKEN 98 (124)
T ss_dssp HHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC---C--EEEECCTTSCHHHHHHHHHHHHHSEEEEETTT
T ss_pred HHHHhcCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCCCCC--ceEeecCCcCHHHHHHHHHHhcCCCcccCHHH
Confidence 6788999999999999999999999999999999999999998764 478885 8999999999999999999999999
Q ss_pred HHHHHHHHhhhChHhHHHHHHHHHH
Q 005282 606 AQDLLRAADQYLLEGLKRLCEYSIA 630 (704)
Q Consensus 606 ~~~ll~~A~~~~~~~l~~~c~~~l~ 630 (704)
+.+++.+|++|+++.|++.|+++|.
T Consensus 99 v~~ll~~A~~~~~~~L~~~C~~~l~ 123 (124)
T 2ihc_A 99 VDEVCKCVEFLSVHNIEESCFQFLK 123 (124)
T ss_dssp HHHHHHHHHHHTBSSCCGGGGGTC-
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHh
Confidence 9999999999999999999998874
No 57
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=99.79 E-value=1.4e-19 Score=151.96 Aligned_cols=94 Identities=20% Similarity=0.264 Sum_probs=86.7
Q ss_pred hhcCCCcccEEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhcCccccChhhHHH
Q 005282 529 FVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVDIAQD 608 (704)
Q Consensus 529 ~~~~~~~~d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~ 608 (704)
.+.++.+|||++.++|+.|+|||.||+++|+||++ ....|.++++++++|+.+|+|+|||++.++.+++.+
T Consensus 24 ~r~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~---------~~~~i~l~~v~~~~f~~ll~fiYtg~~~i~~~~v~~ 94 (119)
T 3m5b_A 24 ARLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGR---------RGQWALGEGISPSTFAQLLNFVYGESVELQPGELRP 94 (119)
T ss_dssp HHHTTTTCCEEEEETTEEEEECHHHHHTTCGGGCC---------CEEEECCSSCCHHHHHHHHHHHTTCCEEECGGGHHH
T ss_pred HHhcCCCcceEEEECCEEEeeEHHHHHHcCHHHhc---------CCCEEEeCCCCHHHHHHHHHHHcCCCcCcCHHHHHH
Confidence 36778999999999999999999999999999985 245789999999999999999999999999999999
Q ss_pred HHHHHhhhChHhHHHHHHHHHHh
Q 005282 609 LLRAADQYLLEGLKRLCEYSIAQ 631 (704)
Q Consensus 609 ll~~A~~~~~~~l~~~c~~~l~~ 631 (704)
++.+|++|+++.|++.|++++.+
T Consensus 95 ll~aA~~l~i~~l~~~C~~~~~~ 117 (119)
T 3m5b_A 95 LQEAARALGVQSLEEACWRARGD 117 (119)
T ss_dssp HHHHHHHTTCHHHHHHHHHHC--
T ss_pred HHHHHHHhCCHHHHHHHHHHHhh
Confidence 99999999999999999998764
No 58
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=99.78 E-value=4.1e-19 Score=148.84 Aligned_cols=93 Identities=26% Similarity=0.426 Sum_probs=87.4
Q ss_pred HHhhhcCCCcccEEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhcCcc-ccChh
Q 005282 526 GEQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNV-DVSVD 604 (704)
Q Consensus 526 ~~~~~~~~~~~d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~-~~~~~ 604 (704)
.++++.++.+|||++.++|+.|+|||.||+++|+||++||.++ ...|.++++++++|+.+++|+|||++ .++.+
T Consensus 22 l~~~~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~-----~~~i~l~~~~~~~f~~~l~~~Ytg~~~~~~~~ 96 (116)
T 3fkc_A 22 LNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVA-----GQVVELSFIRAEIFAEILNYIYSSKIVRVRSD 96 (116)
T ss_dssp HHHHHHHTTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSC-----CSEEEECSSCHHHHHHHHHHHTTSCCCSCCHH
T ss_pred HHHHHhcCCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCC-----CCEEEeCCCCHHHHHHHHHhhcCCCcCCCCHH
Confidence 3678899999999999999999999999999999999999875 46899999999999999999999999 79999
Q ss_pred hHHHHHHHHhhhChHhHHH
Q 005282 605 IAQDLLRAADQYLLEGLKR 623 (704)
Q Consensus 605 ~~~~ll~~A~~~~~~~l~~ 623 (704)
++.+++.+|++|+++.|++
T Consensus 97 ~~~~ll~~A~~l~i~~L~~ 115 (116)
T 3fkc_A 97 LLDELIKSGQLLGVKFIAA 115 (116)
T ss_dssp HHHHHHHHHHHHTCHHHHT
T ss_pred HHHHHHHHHHHhCccccCc
Confidence 9999999999999999874
No 59
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.72 E-value=1.7e-15 Score=158.83 Aligned_cols=337 Identities=16% Similarity=0.165 Sum_probs=257.9
Q ss_pred hhhHHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHH
Q 005282 39 TQQDLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEV 118 (704)
Q Consensus 39 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v 118 (704)
+.+.....++.+++.+... .....++.|+..|..++++- +. -+.+++++.|+..|+.... |.++
T Consensus 15 ~~qs~~etI~~L~~Rl~~~-----tl~eDRR~Av~~Lk~~sk~y--~~-~Vg~~~l~~li~~L~~d~~--------D~e~ 78 (651)
T 3grl_A 15 PQHTEAETIQKLCDRVASS-----TLLDDRRNAVRALKSLSKKY--RL-EVGIQAMEHLIHVLQTDRS--------DSEI 78 (651)
T ss_dssp ---CHHHHHHHHHHHHHHC-----CSHHHHHHHHHHHHHTTTTT--TT-HHHHHTHHHHHHHHHSCTT--------CHHH
T ss_pred CCCChhhHHHHHHHHHhhc-----cchhHHHHHHHHHHHHHHHh--HH-HhhhhhHHHHHHHHhcccc--------cHHH
Confidence 3455667788899998663 33446789999999998742 12 2356789999999999876 7899
Q ss_pred HHHHHHHHHhhc-CChh-----------------hHHHH-HHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhh
Q 005282 119 EKECAFALGLLA-VKPE-----------------HQQII-VDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLA 179 (704)
Q Consensus 119 ~~~a~~~L~~l~-~~~~-----------------~~~~~-~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~ 179 (704)
...++.+|.++. .+++ +.+.+ .+.+.++.|+.+|...+. .++.+++.+|..++
T Consensus 79 v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df--------~vR~~alqlL~~L~ 150 (651)
T 3grl_A 79 IGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDF--------HVRWPGVKLLTSLL 150 (651)
T ss_dssp HHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCH--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccH--------HHHHHHHHHHHHHH
Confidence 999999998876 3321 22333 355789999999987654 89999999999999
Q ss_pred hcChh-hhhhhh-ccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCC----HHHHH
Q 005282 180 HENAN-IKTRVR-VEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSED----ASVHF 253 (704)
Q Consensus 180 ~~~~~-~~~~~~-~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~----~~v~~ 253 (704)
..++. .++.+. ..++++.|+.+|.++...+|..++..|.+|+.++++.++.+.-.|+++.|+.++.... ..+..
T Consensus 151 ~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~ 230 (651)
T 3grl_A 151 KQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVE 230 (651)
T ss_dssp HHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHH
T ss_pred hcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHH
Confidence 87877 677777 5699999999999999999999999999999988888888888999999999998644 47889
Q ss_pred HHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChh------HHHH---HHHHHHHHhccCC------cchHHHHhc
Q 005282 254 EAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSE------SKRE---AALLLGQFAAADS------NSKVHIVQR 318 (704)
Q Consensus 254 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~------~~~~---a~~~L~~l~~~~~------~~~~~~~~~ 318 (704)
.++.+|.||...++.++..+.+.|.++.|..++..+... ...+ +..++.-++..+. .++..+.+.
T Consensus 231 DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~ 310 (651)
T 3grl_A 231 DCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQC 310 (651)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHC
Confidence 999999999999998999999999999999999754321 2223 4445566655422 456678889
Q ss_pred CChHHHHHhhCCC--CHHHHHHHHHHHHHhhcCCc-hhhhHHhhC---------ChHHHHHhhcC-CChhHHHHHHHHHH
Q 005282 319 GAVRPLIEMLQSP--DSQLKEMSAFALGRLAQDTH-NQAGIAQDG---------GILPLLKLLDS-KNGSLQHNAAFALY 385 (704)
Q Consensus 319 ~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~---------~~~~L~~ll~~-~~~~v~~~a~~~L~ 385 (704)
|+++.|++++..+ +..++..|..+++.+..++. ++..+.... .+..++.++.+ ....+|.+|+.++.
T Consensus 311 g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ 390 (651)
T 3grl_A 311 GLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQ 390 (651)
T ss_dssp THHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 9999999998765 67899999999999997654 455554432 12224444544 45788999999999
Q ss_pred HcccC-CchhhHHHh
Q 005282 386 GLADN-EDNVADLVR 399 (704)
Q Consensus 386 ~l~~~-~~~~~~l~~ 399 (704)
.+..+ ++.+..++.
T Consensus 391 ay~~~N~~~Q~~i~~ 405 (651)
T 3grl_A 391 CFLYKNQKGQGEIVS 405 (651)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHH
Confidence 88864 444555544
No 60
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.66 E-value=4.5e-14 Score=148.09 Aligned_cols=417 Identities=17% Similarity=0.152 Sum_probs=283.7
Q ss_pred HHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhc-Ch-----------------hHHHHHH-hCCChHHHHhhccCC
Q 005282 44 VQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAK-NE-----------------EIVSLIV-DNGAVPALVEHLQTP 104 (704)
Q Consensus 44 ~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~-~~-----------------~~~~~l~-~~g~i~~L~~lL~~~ 104 (704)
...++.+++.|.. +.++......++.+|.++.. ++ .+.+.++ +.+.|+.|+.+|+..
T Consensus 59 ~~~l~~li~~L~~----d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~ 134 (651)
T 3grl_A 59 IQAMEHLIHVLQT----DRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEF 134 (651)
T ss_dssp HHTHHHHHHHHHS----CTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCC
T ss_pred hhhHHHHHHHHhc----ccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCc
Confidence 3445555555544 34555566778888877644 21 1334444 568999999999887
Q ss_pred CcCCCCCCCCchHHHHHHHHHHHhhc-CChh-hHHHHHHc-CCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhc
Q 005282 105 PQLTNAQIPYEHEVEKECAFALGLLA-VKPE-HQQIIVDT-GALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHE 181 (704)
Q Consensus 105 ~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~-~~~~~~~~-g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~ 181 (704)
+- .+|..++++|..|+ ..++ .++.+... ++++.|+.+|.+... .++..++..|.+++.+
T Consensus 135 df----------~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE--------~iRneallLL~~Lt~~ 196 (651)
T 3grl_A 135 DF----------HVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSRE--------VIRNDGVLLLQALTRS 196 (651)
T ss_dssp CH----------HHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSH--------HHHHHHHHHHHHHHTT
T ss_pred cH----------HHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchH--------HHHHHHHHHHHHHhcC
Confidence 54 99999999999999 6666 78888855 999999999998765 8899999999999999
Q ss_pred ChhhhhhhhccCCcHHHHHHhcCCC----HHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCH------HH
Q 005282 182 NANIKTRVRVEDGIPPLVELLKFVD----VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDA------SV 251 (704)
Q Consensus 182 ~~~~~~~~~~~~~i~~L~~ll~~~~----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~------~v 251 (704)
+++.++.+.-.|+++.|+.++..+. ..+...++.++.+|..+++.++..+.+.|+++.|..++..++. ..
T Consensus 197 n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk 276 (651)
T 3grl_A 197 NGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQK 276 (651)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHH
T ss_pred CHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHH
Confidence 9999999999999999999999544 4788999999999999999999999999999999999974432 12
Q ss_pred HH---HHHHHHHHHhcC------ChhhHHHHHHcCCHHHHHHHhcCC--ChhHHHHHHHHHHHHhccCCcchHHHHhcC-
Q 005282 252 HF---EAVGVIGNLVHS------SPSIKKEVILAGALQPVIGLLSSS--CSESKREAALLLGQFAAADSNSKVHIVQRG- 319 (704)
Q Consensus 252 ~~---~a~~~L~~l~~~------~~~~~~~~~~~~~l~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~- 319 (704)
.. .++.++.-+... ...+...+.+.|+++.++.++... ...++..|+.+++.+..+++.++..+.+..
T Consensus 277 ~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~v 356 (651)
T 3grl_A 277 VTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNA 356 (651)
T ss_dssp HHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEE
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccC
Confidence 22 255666666544 234566788899999999998765 567889999999999998888888776542
Q ss_pred --------ChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCc-hhhhHHhh----------CCh---HHHHHhhcCCChhH
Q 005282 320 --------AVRPLIEMLQS-PDSQLKEMSAFALGRLAQDTH-NQAGIAQD----------GGI---LPLLKLLDSKNGSL 376 (704)
Q Consensus 320 --------~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~----------~~~---~~L~~ll~~~~~~v 376 (704)
++..|+.++.+ ....+|.+|+.++..+..+++ .+..+... ..+ ..+..-+-+.++--
T Consensus 357 p~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~ 436 (651)
T 3grl_A 357 PSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLS 436 (651)
T ss_dssp SSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHH
T ss_pred CCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHH
Confidence 33334444544 568899999999999886654 33333322 011 12344444566654
Q ss_pred HHHHHHHHHHccc-CCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHh-hccHHHHHHH
Q 005282 377 QHNAAFALYGLAD-NEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLR-VADRAVKRRV 454 (704)
Q Consensus 377 ~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a 454 (704)
.-.|+.+|.++-. +++.+..+.+--.-.. .+...+ ..++.+...+. ..++.++..-
T Consensus 437 ~wfAavil~hll~~n~~~K~~~l~v~l~~~--~ge~~v--------------------tliq~~~~~L~~~~~~ri~vgy 494 (651)
T 3grl_A 437 NWCAAVALAHALQENATQKEQLLRVQLATS--IGNPPV--------------------SLLQQCTNILSQGSKIQTRVGL 494 (651)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHTTCBCCCC--TTCCCC--------------------BHHHHHHHHTTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhCccccc--CCCCcc--------------------cHHHHHHHHHhcCCchhHHHHH
Confidence 4567778888876 4455555554210000 000000 11222233332 2344443332
Q ss_pred HHH-HHhccCCCccceeeecCC-cHHHHHHHHhh----cchhhhhhHHHHHHHHhh
Q 005282 455 TLA-LAHLCAPDDCKTIFIDNN-GLELLLGLLES----TSVKQREESSVALYKLAT 504 (704)
Q Consensus 455 ~~~-L~~l~~~~~~~~~l~~~~-~i~~L~~ll~~----~~~~~~~~a~~~L~~L~~ 504 (704)
+.. ...|..++..-..|+..+ .++.|+..+.. .++-+|-.++..|+-.-.
T Consensus 495 L~LL~~WL~e~p~AV~dFL~~~s~l~~L~~~i~~~~~~~~~lvqGL~a~LLGi~ye 550 (651)
T 3grl_A 495 LMLLCTWLSNCPIAVTHFLHNSANVPFLTGQIAENLGEEEQLVQGLCALLLGISIY 550 (651)
T ss_dssp HHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCChHHHHHHHcCCchHHHHHHHHHhccCcchHHHHHHHHHHHHHHhh
Confidence 222 244566666666666665 58999988753 234567767666664444
No 61
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.65 E-value=2.3e-15 Score=166.78 Aligned_cols=416 Identities=15% Similarity=0.107 Sum_probs=279.8
Q ss_pred HHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHH
Q 005282 48 RAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALG 127 (704)
Q Consensus 48 ~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~ 127 (704)
+.+++.+..++.+ ++..++..++..|..++..-... .....++|.+..++.+++. .+|..|+.+|+
T Consensus 163 ~~l~~~l~~l~~d--~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~----------~vr~~a~~~l~ 228 (588)
T 1b3u_A 163 AELRQYFRNLCSD--DTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQD----------SVRLLAVEACV 228 (588)
T ss_dssp HHHHHHHHHHHTC--SCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCH----------HHHTTHHHHHH
T ss_pred HHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCcH----------HHHHHHHHHHH
Confidence 3455555555443 34557888888888887531110 1134567888888877654 89999999999
Q ss_pred hhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCC
Q 005282 128 LLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD 206 (704)
Q Consensus 128 ~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~ 206 (704)
.++ ..+. .......+|.+..++.+.+ |.++..++.+|+.++..... .......++.+..++++++
T Consensus 229 ~l~~~~~~---~~~~~~~~~~l~~~~~d~~--------~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~ 294 (588)
T 1b3u_A 229 NIAQLLPQ---EDLEALVMPTLRQAAEDKS--------WRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCE 294 (588)
T ss_dssp HHHHHSCH---HHHHHHTHHHHHHHHTCSS--------HHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSS
T ss_pred HHHHhCCH---HHHHHHHHHHHHHHccCCC--------HHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCCc
Confidence 988 2221 1122346677777775433 48999999999999853211 1233466899999999999
Q ss_pred HHHHHHHHHHHHHhccCCchh-hHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHH
Q 005282 207 VKVQRAAAGALRTLAFKNDEN-KKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGL 285 (704)
Q Consensus 207 ~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 285 (704)
+.++..++.++..++...+.. +.......+++.+..++.++++.+|..++++|+.++..-. .......+++.+..+
T Consensus 295 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~---~~~~~~~l~p~l~~~ 371 (588)
T 1b3u_A 295 AEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG---KDNTIEHLLPLFLAQ 371 (588)
T ss_dssp HHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC---HHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh---HhHHHHHHHHHHHHH
Confidence 999999999999998633221 1112334568889999999999999999999999874311 112234578899999
Q ss_pred hcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHH
Q 005282 286 LSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPL 365 (704)
Q Consensus 286 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L 365 (704)
+.+++++++..++.++..++...... .....+++.+..++.+.+..++..++.+|..++..-... ......++.+
T Consensus 372 l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l 446 (588)
T 1b3u_A 372 LKDECPEVRLNIISNLDCVNEVIGIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE--FFDEKLNSLC 446 (588)
T ss_dssp HTCSCHHHHHHHHTTCHHHHHHSCHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG--GCCHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH--HHHHHHHHHH
Confidence 99999999999999988887532211 122356888889899999999999999999988532111 1122346778
Q ss_pred HHhhcCCChhHHHHHHHHHHHcccCCchhhHHHhhCCccccccccccccc-chHHHHHHHHHHHH-----HhhcchhHHH
Q 005282 366 LKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQP-TKDCVARTLKRLEE-----KVHGRVLNHL 439 (704)
Q Consensus 366 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~~L 439 (704)
+.++.+.+..+|..|+.++..++..-... ......++.+.+....... ...+....+..+.. .+...+++.+
T Consensus 447 ~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l 524 (588)
T 1b3u_A 447 MAWLVDHVYAIREAATSNLKKLVEKFGKE--WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTV 524 (588)
T ss_dssp HHGGGCSSHHHHHHHHHHHHHHHHHHCHH--HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 88899999999999999999997521111 1122333333322111111 11122222322222 1244688889
Q ss_pred HHHHhhccHHHHHHHHHHHHhccCCCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHh
Q 005282 440 LYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLA 503 (704)
Q Consensus 440 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~ 503 (704)
+..+.++++.++..++++|+.++..-+.. +.....++.|.+++.+.++++|..|..++..+.
T Consensus 525 ~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 525 LRMAGDPVANVRFNVAKSLQKIGPILDNS--TLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHGGGSCHH--HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HhhCCCCCchHHHHHHHHHHHHHHHhchh--hhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 99999999999999999999996532211 122345677778778899999999999998764
No 62
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.64 E-value=4.5e-15 Score=171.54 Aligned_cols=379 Identities=14% Similarity=0.107 Sum_probs=261.1
Q ss_pred hhhHHHHHHHHHHHHHhhcC------hhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChh
Q 005282 62 ETDRAAAKTASHALVEFAKN------EEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPE 134 (704)
Q Consensus 62 ~~~~~~~~~a~~~L~~l~~~------~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~ 134 (704)
+.+..++..|+..|.+.... ++.+..+ -+.+++.|.+++. .+|..++.+++.++ .+..
T Consensus 59 ~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~i-----k~~ll~~l~~~~~----------~vr~~~a~~i~~ia~~~~~ 123 (852)
T 4fdd_A 59 SEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFI-----KSECLNNIGDSSP----------LIRATVGILITTIASKGEL 123 (852)
T ss_dssp TSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHH-----HHHHHTTTTCSSH----------HHHHHHHHHHHHHHHHTTT
T ss_pred CCChHHHHHHHHHHHHHHHHccCCCCHHHHHHH-----HHHHHHHHcCCCH----------HHHHHHHHHHHHHHHhcCc
Confidence 34556788888888877542 3333333 5667777776544 89999999999999 2211
Q ss_pred hHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhh----ccCCcHHHHHHhcCCCHHHH
Q 005282 135 HQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVR----VEDGIPPLVELLKFVDVKVQ 210 (704)
Q Consensus 135 ~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~----~~~~i~~L~~ll~~~~~~~~ 210 (704)
. .-.+.++.|++.+.+.+. .+++.++.+|+.++...+.....-. ....++.+++.++++++.+|
T Consensus 124 ~----~wp~ll~~L~~~l~~~~~--------~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR 191 (852)
T 4fdd_A 124 Q----NWPDLLPKLCSLLDSEDY--------NTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIR 191 (852)
T ss_dssp T----TCTTHHHHHHHHHSCSSH--------HHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHH
T ss_pred c----ccHHHHHHHHHHHcCCCH--------HHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHH
Confidence 0 013457788888876543 8899999999999965443211000 12356777788889999999
Q ss_pred HHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCC
Q 005282 211 RAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSC 290 (704)
Q Consensus 211 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~ 290 (704)
..|+.++..+....+..... .-.+.++.+..++.++++.++..++++|..++...+....... .++++.++..+.+.+
T Consensus 192 ~~A~~aL~~~~~~~~~~~~~-~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~~ 269 (852)
T 4fdd_A 192 SHAVACVNQFIISRTQALML-HIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQDQD 269 (852)
T ss_dssp HHHHHHHHTTTTTTCHHHHT-SHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHhcccHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHccCCc
Confidence 99999999887533321111 1124678888888899999999999999999976554322222 246788888888888
Q ss_pred hhHHHHHHHHHHHHhccCCcchHHHHh---cCChHHHHHhh-----------CC-----------CCHHHHHHHHHHHHH
Q 005282 291 SESKREAALLLGQFAAADSNSKVHIVQ---RGAVRPLIEML-----------QS-----------PDSQLKEMSAFALGR 345 (704)
Q Consensus 291 ~~~~~~a~~~L~~l~~~~~~~~~~~~~---~~~i~~L~~ll-----------~~-----------~~~~v~~~a~~~L~~ 345 (704)
+.++..|+..+..++.. +..+. ... ..+++.++..+ .+ .+..++..++.+|..
T Consensus 270 ~~vr~~a~e~l~~l~~~-~~~~~-~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~ 347 (852)
T 4fdd_A 270 ENVALEACEFWLTLAEQ-PICKD-VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDV 347 (852)
T ss_dssp HHHHHHHHHHHHHHTTS-TTHHH-HHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-hhHHH-HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHH
Confidence 99999999999998753 22222 221 13456666666 22 123468889999999
Q ss_pred hhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHH
Q 005282 346 LAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLK 425 (704)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~ 425 (704)
++..... .+ -...++.+..++.+.++.+|..|+.+|++++..... .+ . ..
T Consensus 348 la~~~~~--~~-~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~--~~-~-~~----------------------- 397 (852)
T 4fdd_A 348 LANVYRD--EL-LPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ--GM-I-PY----------------------- 397 (852)
T ss_dssp HHHHHGG--GG-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHH--HH-G-GG-----------------------
T ss_pred HHHhccH--HH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchH--HH-H-HH-----------------------
Confidence 8864321 11 123556677888889999999999999999864321 11 1 00
Q ss_pred HHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCcc-ceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhh
Q 005282 426 RLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDC-KTIFIDNNGLELLLGLLESTSVKQREESSVALYKLAT 504 (704)
Q Consensus 426 ~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~ 504 (704)
...+++.++..+.+.++.++..|+++|++++..-.. .....-.+.++.|++.+.++++.+|..|+++|.+++.
T Consensus 398 ------l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~ 471 (852)
T 4fdd_A 398 ------LPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEE 471 (852)
T ss_dssp ------HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 123677888999999999999999999999652111 0001113568888888888899999999999999998
Q ss_pred hcC
Q 005282 505 KAT 507 (704)
Q Consensus 505 ~~~ 507 (704)
...
T Consensus 472 ~~~ 474 (852)
T 4fdd_A 472 EAC 474 (852)
T ss_dssp HHG
T ss_pred Hhh
Confidence 764
No 63
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.62 E-value=9.7e-15 Score=168.75 Aligned_cols=382 Identities=15% Similarity=0.087 Sum_probs=258.2
Q ss_pred hHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHH--
Q 005282 64 DRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIV-- 140 (704)
Q Consensus 64 ~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~-- 140 (704)
+..++..++.++..++..... . ...+.++.|++.+.+++. .++..++.+|+.++ ..+.....-.
T Consensus 103 ~~~vr~~~a~~i~~ia~~~~~-~--~wp~ll~~L~~~l~~~~~----------~~r~~al~~L~~i~~~~~~~~~~~~~~ 169 (852)
T 4fdd_A 103 SPLIRATVGILITTIASKGEL-Q--NWPDLLPKLCSLLDSEDY----------NTCEGAFGALQKICEDSAEILDSDVLD 169 (852)
T ss_dssp SHHHHHHHHHHHHHHHHHTTT-T--TCTTHHHHHHHHHSCSSH----------HHHHHHHHHHHHHHHHHTTHHHHCSSS
T ss_pred CHHHHHHHHHHHHHHHHhcCc-c--ccHHHHHHHHHHHcCCCH----------HHHHHHHHHHHHHHHHhHHHhchhhhc
Confidence 345778888888888762100 0 124568999999988754 89999999999999 3332211000
Q ss_pred --HcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHH
Q 005282 141 --DTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALR 218 (704)
Q Consensus 141 --~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~ 218 (704)
-.+.++.+++.+.+.+ +.++..|+++|.++....+.. ..-.-.+.++.+..++.++++.++..++++|.
T Consensus 170 ~~~~~il~~l~~~l~~~~--------~~vR~~A~~aL~~~~~~~~~~-~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~ 240 (852)
T 4fdd_A 170 RPLNIMIPKFLQFFKHSS--------PKIRSHAVACVNQFIISRTQA-LMLHIDSFIENLFALAGDEEPEVRKNVCRALV 240 (852)
T ss_dssp SCHHHHHHHHTTTTTCSS--------HHHHHHHHHHHHTTTTTTCHH-HHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhcCCC--------HHHHHHHHHHHHHHHhcccHH-HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 0123455555555433 389999999999887543321 11112356788888899999999999999999
Q ss_pred HhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHH---cCCHHHHHHHh---------
Q 005282 219 TLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVIL---AGALQPVIGLL--------- 286 (704)
Q Consensus 219 ~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~---~~~l~~L~~ll--------- 286 (704)
.++...++.-.... .++++.++..+.+.++.++..|+..+..++... .... ... ...++.++..+
T Consensus 241 ~l~~~~~~~~~~~l-~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~-~~~~-~~~~~~~~l~p~ll~~l~~~e~d~~~ 317 (852)
T 4fdd_A 241 MLLEVRMDRLLPHM-HNIVEYMLQRTQDQDENVALEACEFWLTLAEQP-ICKD-VLVRHLPKLIPVLVNGMKYSDIDIIL 317 (852)
T ss_dssp HHHHHCHHHHGGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTST-THHH-HHTTTHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHhCHHHHHHHH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcch-hHHH-HHHHHHHHHHHHHHHHcCCcHhHHHH
Confidence 99875544322222 246888888889999999999999999998652 2222 221 13456666665
Q ss_pred --cC-----------CChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchh
Q 005282 287 --SS-----------SCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQ 353 (704)
Q Consensus 287 --~~-----------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 353 (704)
.+ .++.++..++.+|..++...++. +. ..+++.+...+.++++.+|..|+++|++++.+....
T Consensus 318 ~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~ 393 (852)
T 4fdd_A 318 LKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQG 393 (852)
T ss_dssp HHC------------CCCCHHHHHHHHHHHHHHHHGGG---GH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHH
T ss_pred hcCCcccccccccccccchHHHHHHHHHHHHHHhccHH---HH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHH
Confidence 22 23456888899998887543321 11 235778888888899999999999999999876543
Q ss_pred hhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhc
Q 005282 354 AGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHG 433 (704)
Q Consensus 354 ~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (704)
..-.-.+.++.++.++.+.++.||..++++|++++..-. . ..... ...
T Consensus 394 ~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~------~-~~~~~-------------------------~~~ 441 (852)
T 4fdd_A 394 MIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVV------S-QPPDT-------------------------YLK 441 (852)
T ss_dssp HGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHH------H-SCTTT-------------------------THH
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc------c-chHHH-------------------------HHH
Confidence 333334667889999999999999999999999864210 0 00000 012
Q ss_pred chhHHHHHHHhhccHHHHHHHHHHHHhccCCCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282 434 RVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKA 506 (704)
Q Consensus 434 ~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 506 (704)
.+++.++..+.+.++.++..|+++|.+++........-.-.+.++.|+.++...+......+..++..++...
T Consensus 442 ~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~ 514 (852)
T 4fdd_A 442 PLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSV 514 (852)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHh
Confidence 3667788888888999999999999999653222111112356777888887665555566777888877654
No 64
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.62 E-value=3.3e-14 Score=157.47 Aligned_cols=370 Identities=14% Similarity=0.079 Sum_probs=264.2
Q ss_pred hhHHHHHHHHHHHHHhhcC-hhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CCh-hhHHHH
Q 005282 63 TDRAAAKTASHALVEFAKN-EEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKP-EHQQII 139 (704)
Q Consensus 63 ~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~-~~~~~~ 139 (704)
++..++..|..+|.+++.. +.. . ....+++.+..+.+++.. .+|..|+.+++.++ ..+ ..+
T Consensus 99 ~~~~vR~~a~~~L~~l~~~~~~~--~-~~~~l~~~l~~l~~~~~~----------~~R~~a~~~l~~~~~~~~~~~~--- 162 (588)
T 1b3u_A 99 EETVVRDKAVESLRAISHEHSPS--D-LEAHFVPLVKRLAGGDWF----------TSRTSACGLFSVCYPRVSSAVK--- 162 (588)
T ss_dssp SCHHHHHHHHHHHHHHHTTSCHH--H-HHHTHHHHHHHHHTCSSH----------HHHHHHGGGHHHHTTTSCHHHH---
T ss_pred chHHHHHHHHHHHHHHHHHCCHH--H-HHHHHHHHHHHHhcCCCc----------HHHHHHHHHHHHHHHhcCHHHH---
Confidence 3455788888888888763 211 1 122346667677666543 88999999999988 322 222
Q ss_pred HHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHH
Q 005282 140 VDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRT 219 (704)
Q Consensus 140 ~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~ 219 (704)
...++.+..++.+.+. .++..++.+|+.++...+. .......+|.+..+++++++.++..|+.+|..
T Consensus 163 --~~l~~~l~~l~~d~~~--------~VR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~ 229 (588)
T 1b3u_A 163 --AELRQYFRNLCSDDTP--------MVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLASDEQDSVRLLAVEACVN 229 (588)
T ss_dssp --HHHHHHHHHHHTCSCH--------HHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHH
T ss_pred --HHHHHHHHHHhCCCCH--------HHHHHHHHHHHHHHHHhcH---HhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 2345677777765543 9999999999999854332 12345678899999999999999999999999
Q ss_pred hccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHH
Q 005282 220 LAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAAL 299 (704)
Q Consensus 220 l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~ 299 (704)
++...+.. .....+++.+..++.++++.+|..++.+|+.++...+ .......+++.+..++.++++.++..++.
T Consensus 230 l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~ 303 (588)
T 1b3u_A 230 IAQLLPQE---DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG---PEITKTDLVPAFQNLMKDCEAEVRAAASH 303 (588)
T ss_dssp HHHHSCHH---HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC---HHHHHHTHHHHHHHHHTCSSHHHHHHHHH
T ss_pred HHHhCCHH---HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhC---cccchhHHHHHHHHHhCCCcHHHHHHHHH
Confidence 98533221 1223468888899999999999999999999985321 12234567899999999999999999999
Q ss_pred HHHHHhccCCcc-hHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHH
Q 005282 300 LLGQFAAADSNS-KVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQH 378 (704)
Q Consensus 300 ~L~~l~~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~ 378 (704)
+|..++...... ........+++.+..++.++++.+|..++++|+.++..-... ......++.+..++.+.++++|.
T Consensus 304 ~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~p~l~~~l~d~~~~Vr~ 381 (588)
T 1b3u_A 304 KVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD--NTIEHLLPLFLAQLKDECPEVRL 381 (588)
T ss_dssp HHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH--HHHHHTHHHHHHHHTCSCHHHHH
T ss_pred HHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh--HHHHHHHHHHHHHhCCCchHHHH
Confidence 999998644322 111233567888999999999999999999999998542221 12234677788999999999999
Q ss_pred HHHHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHH
Q 005282 379 NAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLAL 458 (704)
Q Consensus 379 ~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L 458 (704)
.++.+|..+...-... .....+++.+..++.+.++.++..++.+|
T Consensus 382 ~a~~~l~~l~~~~~~~-----------------------------------~~~~~~lp~l~~~~~d~~~~vr~~~~~~l 426 (588)
T 1b3u_A 382 NIISNLDCVNEVIGIR-----------------------------------QLSQSLLPAIVELAEDAKWRVRLAIIEYM 426 (588)
T ss_dssp HHHTTCHHHHHHSCHH-----------------------------------HHHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHH-----------------------------------HHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 9998888775311000 00112566777788888899999999999
Q ss_pred HhccCCCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282 459 AHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKA 506 (704)
Q Consensus 459 ~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 506 (704)
..++..-... +.....++.+..++.++++.+|..|+.++..++...
T Consensus 427 ~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 472 (588)
T 1b3u_A 427 PLLAGQLGVE--FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKF 472 (588)
T ss_dssp HHHHHHHCGG--GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCHH--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh
Confidence 9885421111 122346788888888888999999999999998754
No 65
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.57 E-value=2.2e-13 Score=145.88 Aligned_cols=391 Identities=14% Similarity=0.072 Sum_probs=252.6
Q ss_pred HHHHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhh
Q 005282 50 QIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLL 129 (704)
Q Consensus 50 l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l 129 (704)
+...|..+++.+ ...+.+|-..|.++..+. ..+.+..|+.++.+.+. ++.+|..|+..|.++
T Consensus 3 l~~~L~~~~s~d---~~~r~~Ae~~L~~~~~~~-------~~~~~~~L~~il~~~~~--------~~~vR~~a~~~Lk~~ 64 (462)
T 1ibr_B 3 LITILEKTVSPD---RLELEAAQKFLERAAVEN-------LPTFLVELSRVLANPGN--------SQVARVAAGLQIKNS 64 (462)
T ss_dssp HHHHHHHTTCSC---HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCTTS--------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCC---HHHHHHHHHHHHHHHhhC-------hHHHHHHHHHHHHcCCC--------ChHHHHHHHHHHHHh
Confidence 344555555543 345677777777654320 12246778888877643 468999999999999
Q ss_pred c-CChhhHHH-H----------HHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHH
Q 005282 130 A-VKPEHQQI-I----------VDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPP 197 (704)
Q Consensus 130 ~-~~~~~~~~-~----------~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 197 (704)
. ........ + ....+-..++..+.+.+. .+ ..++.+++.++....... .-.+.++.
T Consensus 65 i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~--------~v-~~~~~~i~~ia~~~~~~~---~w~~ll~~ 132 (462)
T 1ibr_B 65 LTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETY--------RP-SSASQCVAGIACAEIPVN---QWPELIPQ 132 (462)
T ss_dssp HCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCS--------SS-CSHHHHHHHHHHHHGGGT---CCTTHHHH
T ss_pred ccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCc--------hh-hHHHHHHHHHHHHhcccc---ccHHHHHH
Confidence 7 22111000 0 011123446666665543 55 678888888885321111 12567899
Q ss_pred HHHHhcCC--CHHHHHHHHHHHHHhccCC-chhhHHhHhcCChHHHHHhhcCC--CHHHHHHHHHHHHHHhcCChhhHH-
Q 005282 198 LVELLKFV--DVKVQRAAAGALRTLAFKN-DENKKLIVECNALPTLVLMLRSE--DASVHFEAVGVIGNLVHSSPSIKK- 271 (704)
Q Consensus 198 L~~ll~~~--~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~- 271 (704)
|+..+.++ ++.++..++.+|..++... +...... -..+++.++..+.++ ++.+|..|+++++++...-.....
T Consensus 133 L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~ 211 (462)
T 1ibr_B 133 LVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDK 211 (462)
T ss_dssp HHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGG-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTS
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999988 9999999999999998632 2211111 123678888889887 799999999999997643221110
Q ss_pred HHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCc
Q 005282 272 EVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTH 351 (704)
Q Consensus 272 ~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 351 (704)
.....-+++.+...+.+.+.+++..++.+|..++...+......+..++++.++..+++.++.++..++..+..++....
T Consensus 212 ~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~ 291 (462)
T 1ibr_B 212 ESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEM 291 (462)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHH
Confidence 00111135666677788889999999999999986554322212222667788888888899999999999998885421
Q ss_pred ------------------hhhhHHh---hCChHHHHHhhcC-------CChhHHHHHHHHHHHcccCCchhhHHHhhCCc
Q 005282 352 ------------------NQAGIAQ---DGGILPLLKLLDS-------KNGSLQHNAAFALYGLADNEDNVADLVRVGGV 403 (704)
Q Consensus 352 ------------------~~~~~~~---~~~~~~L~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i 403 (704)
....+.+ ...++.+++.+.. .+..++..|+.+|..++..-. ..+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~--~~~------ 363 (462)
T 1ibr_B 292 DLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDI------ 363 (462)
T ss_dssp HHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--TTH------
T ss_pred HHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--HHH------
Confidence 0011111 2334555555532 234678888888877754211 011
Q ss_pred ccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCccc-eeeecCCcHHHHHH
Q 005282 404 QKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCK-TIFIDNNGLELLLG 482 (704)
Q Consensus 404 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-~~l~~~~~i~~L~~ 482 (704)
...+++.+...+.+.++.++..|+.+|+.++...... ..-.-...++.|+.
T Consensus 364 ----------------------------~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~ 415 (462)
T 1ibr_B 364 ----------------------------VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIE 415 (462)
T ss_dssp ----------------------------HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHH
T ss_pred ----------------------------HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 0124556677778899999999999999997643211 00011468999999
Q ss_pred HHhhcchhhhhhHHHHHHHHhhhcC
Q 005282 483 LLESTSVKQREESSVALYKLATKAT 507 (704)
Q Consensus 483 ll~~~~~~~~~~a~~~L~~L~~~~~ 507 (704)
++.++++.+|..|+++|.+++...+
T Consensus 416 ~l~d~~~~Vr~~a~~~l~~~~~~~~ 440 (462)
T 1ibr_B 416 LMKDPSVVVRDTAAWTVGRICELLP 440 (462)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred HhcCCCHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999998764
No 66
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.54 E-value=4.5e-13 Score=147.21 Aligned_cols=354 Identities=16% Similarity=0.117 Sum_probs=249.5
Q ss_pred hhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHH
Q 005282 62 ETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIV 140 (704)
Q Consensus 62 ~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~ 140 (704)
+.++.++.-|+++|.++. .++....+ ++.+.+++.+.++ .||..|+.++.++. .+|+...
T Consensus 97 ~~n~~ir~~AL~~L~~i~-~~~~~~~l-----~~~l~~~L~d~~~----------~VRk~A~~al~~i~~~~p~~~~--- 157 (591)
T 2vgl_B 97 DPNPLIRALAVRTMGCIR-VDKITEYL-----CEPLRKCLKDEDP----------YVRKTAAVCVAKLHDINAQMVE--- 157 (591)
T ss_dssp SSSHHHHHHHHHHHHTCC-SGGGHHHH-----HHHHHHHSSCSCH----------HHHHHHHHHHHHHHHSSCCCHH---
T ss_pred CCCHHHHHHHHHHHHcCC-hHHHHHHH-----HHHHHHHcCCCCh----------HHHHHHHHHHHHHHhhChhhcc---
Confidence 456678888888888875 45555554 6889999987754 99999999999999 6666432
Q ss_pred HcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHh
Q 005282 141 DTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTL 220 (704)
Q Consensus 141 ~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l 220 (704)
+.+.++.+..+|.+.+. .++..|+.+|..++..++.........+.++.|+..+.+.++..+...+.++..+
T Consensus 158 ~~~~~~~l~~lL~d~d~--------~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l 229 (591)
T 2vgl_B 158 DQGFLDSLRDLIADSNP--------MVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNY 229 (591)
T ss_dssp HHHHHHHHHHTTSCSCH--------HHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTS
T ss_pred cccHHHHHHHHhCCCCh--------hHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHh
Confidence 34677889999976554 9999999999999976654321112233466777888888899999999999888
Q ss_pred ccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcC---ChhhHHHHHHcCCHHHHHHHhcCCChhHHHHH
Q 005282 221 AFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHS---SPSIKKEVILAGALQPVIGLLSSSCSESKREA 297 (704)
Q Consensus 221 ~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a 297 (704)
+...+... ...++.+..++++.++.|+..|++++..+... +++....+ -..+.+.|+.++. +++.++..+
T Consensus 230 ~~~~~~~~-----~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~-~~~~~~~L~~L~~-~d~~vr~~a 302 (591)
T 2vgl_B 230 NPKDDREA-----QSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNML-LKKLAPPLVTLLS-GEPEVQYVA 302 (591)
T ss_dssp CCCSHHHH-----HHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHH-HHHTHHHHHHHTT-SCHHHHHHH
T ss_pred CCCChHHH-----HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHH-HHHHHHHHHHHhc-CCccHHHHH
Confidence 74332222 23467788888999999999999999998742 23333322 2345677777664 788999999
Q ss_pred HHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHH
Q 005282 298 ALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQ 377 (704)
Q Consensus 298 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~ 377 (704)
+.+|..++..+++.... .+..+. .+.+.+..++..++.+|.+++.... .. ..++.|...+.+.+.+++
T Consensus 303 L~~l~~i~~~~p~~~~~-----~~~~~~-~~~~d~~~Ir~~al~~L~~l~~~~n-v~-----~iv~~L~~~l~~~d~~~r 370 (591)
T 2vgl_B 303 LRNINLIVQKRPEILKQ-----EIKVFF-VKYNDPIYVKLEKLDIMIRLASQAN-IA-----QVLAELKEYATEVDVDFV 370 (591)
T ss_dssp HHHHHHHHHHCCSTTTT-----CTTTTS-CCTTSCHHHHHHHHHHHHHTCCSST-HH-----HHHHHHHHHTTSSCHHHH
T ss_pred HHHHHHHHHhChHHHHH-----HHHhhe-eccCChHHHHHHHHHHHHHHCChhh-HH-----HHHHHHHHHHhcCCHHHH
Confidence 99999998765543211 122221 1224458899999999999885543 22 234567788888899999
Q ss_pred HHHHHHHHHcccCC-chhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHH
Q 005282 378 HNAAFALYGLADNE-DNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTL 456 (704)
Q Consensus 378 ~~a~~~L~~l~~~~-~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~ 456 (704)
..++++++.++..- .... ..++.|+.++......+...+..
T Consensus 371 ~~~v~aI~~la~~~~~~~~--------------------------------------~~v~~Ll~ll~~~~~~v~~e~i~ 412 (591)
T 2vgl_B 371 RKAVRAIGRCAIKVEQSAE--------------------------------------RCVSTLLDLIQTKVNYVVQEAIV 412 (591)
T ss_dssp HHHHHHHHHHHTTCHHHHH--------------------------------------HHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhHHH--------------------------------------HHHHHHHHHHcccchHHHHHHHH
Confidence 99999999997532 1111 14556778888888888888888
Q ss_pred HHHhccC-CCccceeeecCCcHHHHHHHHhh-cchhhhhhHHHHHHHHhh
Q 005282 457 ALAHLCA-PDDCKTIFIDNNGLELLLGLLES-TSVKQREESSVALYKLAT 504 (704)
Q Consensus 457 ~L~~l~~-~~~~~~~l~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~L~~ 504 (704)
++.++.. .+.. ...+++.|.+.+.+ ..+.++..++|+|+..+.
T Consensus 413 ~l~~ii~~~p~~-----~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~ 457 (591)
T 2vgl_B 413 VIRDIFRKYPNK-----YESIIATLCENLDSLDEPDARAAMIWIVGEYAE 457 (591)
T ss_dssp HHHHHHHHSCSS-----CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHCcch-----HHHHHHHHHHHHHhccCHHHHHHHHHHHHcccc
Confidence 8888743 2221 24678888888764 667777777777776544
No 67
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.54 E-value=3.8e-13 Score=147.80 Aligned_cols=356 Identities=17% Similarity=0.142 Sum_probs=252.5
Q ss_pred HHHHHHHHHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcC
Q 005282 65 RAAAKTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTG 143 (704)
Q Consensus 65 ~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g 143 (704)
...++-+.-.+..++. +++... -+++.+.+-|.++++ .+|..|+.+|+++. .++....+
T Consensus 63 ~~~Krl~yl~l~~~~~~~~e~~~-----l~~n~l~kdL~~~n~----------~ir~~AL~~L~~i~-~~~~~~~l---- 122 (591)
T 2vgl_B 63 LELKKLVYLYLMNYAKSQPDMAI-----MAVNSFVKDCEDPNP----------LIRALAVRTMGCIR-VDKITEYL---- 122 (591)
T ss_dssp HHHHHHHHHHHHHHHHHSHHHHH-----TTHHHHGGGSSSSSH----------HHHHHHHHHHHTCC-SGGGHHHH----
T ss_pred HHHHHHHHHHHHHHcccCchHHH-----HHHHHHHHHcCCCCH----------HHHHHHHHHHHcCC-hHHHHHHH----
Confidence 3445555555565555 444422 236778888887754 89999999999997 44444333
Q ss_pred CcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC
Q 005282 144 ALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFK 223 (704)
Q Consensus 144 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 223 (704)
++.+.+++.+.+. .++..|+.++.+++..+++. +...+.++.+..+|.++++.++..|+.+|..++..
T Consensus 123 -~~~l~~~L~d~~~--------~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~ 190 (591)
T 2vgl_B 123 -CEPLRKCLKDEDP--------YVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIADSNPMVVANAVAALSEISES 190 (591)
T ss_dssp -HHHHHHHSSCSCH--------HHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTS
T ss_pred -HHHHHHHcCCCCh--------HHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhh
Confidence 4678888876544 99999999999999766542 23356789999999999999999999999999975
Q ss_pred CchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHH
Q 005282 224 NDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQ 303 (704)
Q Consensus 224 ~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~ 303 (704)
+++........+.+..|+..+.+.++..+...+.++..++..++... ..+++.+..++++.++.++..|++++..
T Consensus 191 ~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~~~~V~~ea~~~i~~ 265 (591)
T 2vgl_B 191 HPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSHANSAVVLSAVKVLMK 265 (591)
T ss_dssp CCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCSSTTHHHHHHHHHHHH
T ss_pred CCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 55332111122346677777778899999999999988875443322 2457778888899999999999999999
Q ss_pred Hhcc---CCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHH
Q 005282 304 FAAA---DSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNA 380 (704)
Q Consensus 304 l~~~---~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a 380 (704)
+... +++....+ -.++.+.|+.++ ++++.+|..|+.+|..++...+.. +.. .+..+. .+.+.+..++..+
T Consensus 266 l~~~~~~~~~~~~~~-~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~---~~~-~~~~~~-~~~~d~~~Ir~~a 338 (591)
T 2vgl_B 266 FLELLPKDSDYYNML-LKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEI---LKQ-EIKVFF-VKYNDPIYVKLEK 338 (591)
T ss_dssp SCCSCCBTTBSHHHH-HHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCST---TTT-CTTTTS-CCTTSCHHHHHHH
T ss_pred HhhccCCCHHHHHHH-HHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHH---HHH-HHHhhe-eccCChHHHHHHH
Confidence 8632 33333322 245667777665 488999999999999998643221 111 122222 2224458999999
Q ss_pred HHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHh
Q 005282 381 AFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAH 460 (704)
Q Consensus 381 ~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~ 460 (704)
+.+|..++.. ++...+ ++.|..++.+.+.+++..++++|+.
T Consensus 339 l~~L~~l~~~-~nv~~i--------------------------------------v~~L~~~l~~~d~~~r~~~v~aI~~ 379 (591)
T 2vgl_B 339 LDIMIRLASQ-ANIAQV--------------------------------------LAELKEYATEVDVDFVRKAVRAIGR 379 (591)
T ss_dssp HHHHHHTCCS-STHHHH--------------------------------------HHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCh-hhHHHH--------------------------------------HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999998743 333332 3356677788899999999999999
Q ss_pred ccCCCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhcC
Q 005282 461 LCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKAT 507 (704)
Q Consensus 461 l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~ 507 (704)
++..-.. .....++.|++++......++..+..++.++.+..+
T Consensus 380 la~~~~~----~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p 422 (591)
T 2vgl_B 380 CAIKVEQ----SAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYP 422 (591)
T ss_dssp HHTTCHH----HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHhChh----HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCc
Confidence 9764321 123568899999998888888889999999987653
No 68
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.52 E-value=1.7e-12 Score=128.66 Aligned_cols=258 Identities=17% Similarity=0.144 Sum_probs=197.9
Q ss_pred HHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHH
Q 005282 139 IVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALR 218 (704)
Q Consensus 139 ~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~ 218 (704)
..+.+.++.|+..|.+++. .++..++++|+++.. .+.++.|+.++.++++.++..|+++|.
T Consensus 19 ~~~~~~i~~L~~~L~~~~~--------~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~ 79 (280)
T 1oyz_A 19 QCKKLNDDELFRLLDDHNS--------LKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILG 79 (280)
T ss_dssp HHHTSCHHHHHHHTTCSSH--------HHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHcCCH--------HHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3456789999999987654 899999999999862 235788999999999999999999999
Q ss_pred HhccCCchhhHHhHhcCChHHHH-HhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHH
Q 005282 219 TLAFKNDENKKLIVECNALPTLV-LMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREA 297 (704)
Q Consensus 219 ~l~~~~~~~~~~~~~~~~i~~L~-~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a 297 (704)
.+.. .+.... ..++.+. .+++++++.++..++++|+++...++... ..+++.|+..+.++++.++..+
T Consensus 80 ~l~~-~~~~~~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~~~vR~~a 148 (280)
T 1oyz_A 80 QIKI-CKKCED-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKSTNVRRAT 148 (280)
T ss_dssp HSCC-CTTTHH-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHH
T ss_pred Hhcc-ccccch-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCCHHHHHHH
Confidence 9974 222111 1234444 34578899999999999999975433222 2357889999999999999999
Q ss_pred HHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHH
Q 005282 298 ALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQ 377 (704)
Q Consensus 298 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~ 377 (704)
+.+|+++.. .+.++.|+.++.++++.++..++++|+.+.... ...++.|+.++.+.++.++
T Consensus 149 ~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~--------~~~~~~L~~~l~d~~~~vR 209 (280)
T 1oyz_A 149 AFAISVIND-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDN--------SDIRDCFVEMLQDKNEEVR 209 (280)
T ss_dssp HHHHHTC--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHhcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc--------HHHHHHHHHHhcCCCHHHH
Confidence 999998742 247999999999999999999999999985332 1356788999999999999
Q ss_pred HHHHHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHH
Q 005282 378 HNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLA 457 (704)
Q Consensus 378 ~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~ 457 (704)
..|+.+|..+.. + ..++.|+..+.+++ ++..++.+
T Consensus 210 ~~A~~aL~~~~~-~------------------------------------------~~~~~L~~~l~d~~--vr~~a~~a 244 (280)
T 1oyz_A 210 IEAIIGLSYRKD-K------------------------------------------RVLSVLCDELKKNT--VYDDIIEA 244 (280)
T ss_dssp HHHHHHHHHTTC-G------------------------------------------GGHHHHHHHHTSSS--CCHHHHHH
T ss_pred HHHHHHHHHhCC-H------------------------------------------hhHHHHHHHhcCcc--HHHHHHHH
Confidence 999999999841 1 13455667776544 88899999
Q ss_pred HHhccCCCccceeeecCCcHHHHHHHHhh-cchhhhhhHHHHHH
Q 005282 458 LAHLCAPDDCKTIFIDNNGLELLLGLLES-TSVKQREESSVALY 500 (704)
Q Consensus 458 L~~l~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~ 500 (704)
|+.+.. ...++.|.+++.+ .++++...+..+|.
T Consensus 245 L~~i~~----------~~~~~~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 245 AGELGD----------KTLLPVLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp HHHHCC----------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred HHhcCc----------hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence 999843 2678999999975 66677777766654
No 69
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.47 E-value=6.3e-12 Score=124.54 Aligned_cols=229 Identities=14% Similarity=0.091 Sum_probs=181.4
Q ss_pred ccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhH
Q 005282 191 VEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIK 270 (704)
Q Consensus 191 ~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 270 (704)
..+.++.|+..|.++++.++..|+++|.++.. .+.++.|+.++.++++.++..++++|+.+.......
T Consensus 21 ~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~- 88 (280)
T 1oyz_A 21 KKLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE- 88 (280)
T ss_dssp HTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH-
T ss_pred HHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc-
Confidence 35678999999999999999999999999872 235788999999999999999999999986432211
Q ss_pred HHHHHcCCHHHHH-HHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q 005282 271 KEVILAGALQPVI-GLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQD 349 (704)
Q Consensus 271 ~~~~~~~~l~~L~-~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 349 (704)
. ..++.+. .++.++++.++..++++|+++...++... ..+++.|...+.++++.++..++++|+++..
T Consensus 89 ~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~- 157 (280)
T 1oyz_A 89 D-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKSTNVRRATAFAISVIND- 157 (280)
T ss_dssp H-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHTC---
T ss_pred h-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-
Confidence 1 1234444 34578889999999999999975333221 2458899999999999999999999998754
Q ss_pred CchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHH
Q 005282 350 THNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEE 429 (704)
Q Consensus 350 ~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~ 429 (704)
.+.++.|+.++.+.++.++..++++|..+....+
T Consensus 158 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~------------------------------------- 191 (280)
T 1oyz_A 158 ---------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS------------------------------------- 191 (280)
T ss_dssp ----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH-------------------------------------
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH-------------------------------------
Confidence 2478899999999999999999999998742111
Q ss_pred HhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhh
Q 005282 430 KVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLAT 504 (704)
Q Consensus 430 ~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~ 504 (704)
..++.|+.++.++++.++..|+++|+++. ....++.|+.++.+ ++++..|+.+|..+..
T Consensus 192 ----~~~~~L~~~l~d~~~~vR~~A~~aL~~~~----------~~~~~~~L~~~l~d--~~vr~~a~~aL~~i~~ 250 (280)
T 1oyz_A 192 ----DIRDCFVEMLQDKNEEVRIEAIIGLSYRK----------DKRVLSVLCDELKK--NTVYDDIIEAAGELGD 250 (280)
T ss_dssp ----HHHHHHHHHTTCSCHHHHHHHHHHHHHTT----------CGGGHHHHHHHHTS--SSCCHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHhcCCCHHHHHHHHHHHHHhC----------CHhhHHHHHHHhcC--ccHHHHHHHHHHhcCc
Confidence 13456788888999999999999999995 34689999999976 4499999999998854
No 70
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.46 E-value=8.5e-12 Score=137.50 Aligned_cols=133 Identities=20% Similarity=0.241 Sum_probs=97.3
Q ss_pred hhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHH
Q 005282 63 TDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVD 141 (704)
Q Consensus 63 ~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~ 141 (704)
.++.++..|+++|.++.. ++....+ ++.+..+|.+.++ .||..|+.++.++. .+|+...
T Consensus 119 ~n~~vr~lAL~~L~~i~~-~~~~~~l-----~~~l~~~L~~~~~----------~VRk~A~~al~~l~~~~p~~v~---- 178 (618)
T 1w63_A 119 STQFVQGLALCTLGCMGS-SEMCRDL-----AGEVEKLLKTSNS----------YLRKKAALCAVHVIRKVPELME---- 178 (618)
T ss_dssp SSSHHHHHHHHHHHHHCC-HHHHHHH-----HHHHHHHHHSCCH----------HHHHHHHHHHHHHHHHCGGGGG----
T ss_pred CCHhHHHHHHHHHHhcCC-HHHHHHH-----HHHHHHHHcCCCH----------HHHHHHHHHHHHHHHHChHHHH----
Confidence 445677888888888874 4444433 7888999988765 99999999999999 6776532
Q ss_pred cCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcC---------------CC
Q 005282 142 TGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKF---------------VD 206 (704)
Q Consensus 142 ~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~---------------~~ 206 (704)
+.++.+..++.+.+. .++..|+.+|..++..+++....+ ...+|.++.+|.+ .+
T Consensus 179 -~~~~~l~~lL~D~d~--------~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~ 247 (618)
T 1w63_A 179 -MFLPATKNLLNEKNH--------GVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISD 247 (618)
T ss_dssp -GGGGGTTTSTTCCCH--------HHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSC
T ss_pred -HHHHHHHHHhCCCCH--------hHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCC
Confidence 567777777776554 899999999999997555432222 3567777776652 47
Q ss_pred HHHHHHHHHHHHHhccCCch
Q 005282 207 VKVQRAAAGALRTLAFKNDE 226 (704)
Q Consensus 207 ~~~~~~a~~~L~~l~~~~~~ 226 (704)
+-.+..++.+|..++..++.
T Consensus 248 ~~~q~~il~~L~~l~~~~~~ 267 (618)
T 1w63_A 248 PFLQVRILRLLRILGRNDDD 267 (618)
T ss_dssp HHHHHHHHHHHHHHTTTCHH
T ss_pred ChHHHHHHHHHHHhCCCCHH
Confidence 88888888888888865443
No 71
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=99.44 E-value=4.7e-13 Score=118.14 Aligned_cols=110 Identities=17% Similarity=0.329 Sum_probs=89.0
Q ss_pred EEEEE-cCeEeehhHHHHhhcCHHHHHhhcC-CCC-CCCCCceEcCCCCHHHHHHHHHHHhcCc----------------
Q 005282 538 VTFVV-EGKQFYAHRICLLASSDAFRAMFDG-GYK-EKNAKDVEIPNIRWNVFELMMRFIYTGN---------------- 598 (704)
Q Consensus 538 ~~~~~-~~~~~~~hk~iL~~~s~~f~~~f~~-~~~-e~~~~~i~l~~~~~~~~~~~l~~~Y~~~---------------- 598 (704)
|+++. +|..|.+||.+ +..|+||++||.+ ++. |+....|++++++...+..+++|+|++.
T Consensus 3 v~L~ssDg~~f~v~~~v-A~~S~~i~~m~~~~~~~~e~~~~~Ipl~~V~~~iL~kViey~~~h~~~~~~~~~~~~~~~~~ 81 (159)
T 2ast_A 3 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRT 81 (159)
T ss_dssp EEEECTTSCEEEEEHHH-HHTCHHHHHHTTSSCSS------CEECTTSCHHHHHHHHHHHHHTTTCCC-----------C
T ss_pred EEEEcCCCCEEEeCHHH-HHHhHHHHHHHHhcCCcccccCCCcCCCCccHHHHHHHHHHHHHcCcCCCCcccccccccch
Confidence 66665 79999999999 8899999999998 666 6777899999999999999999999987
Q ss_pred ----------cccChhhHHHHHHHHhhhChHhHHHHHHHHHHhhCC---hhhHHHHHHHHHHc
Q 005282 599 ----------VDVSVDIAQDLLRAADQYLLEGLKRLCEYSIAQIIS---VENIMLMYELSEAY 648 (704)
Q Consensus 599 ----------~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~---~~~~~~~~~~a~~~ 648 (704)
+.++.+++++|+.+|+|+++.+|.+.|..++...+. ++.+-.++.+...|
T Consensus 82 ~~i~~wD~~F~~id~~~l~eLl~AAnyL~I~~Lld~~c~~va~~i~gkt~eeir~~f~I~~d~ 144 (159)
T 2ast_A 82 DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDF 144 (159)
T ss_dssp CCCCHHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSSCCHHHHHHHTTCCCCS
T ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCC
Confidence 678889999999999999999999999999976664 44444444443333
No 72
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.43 E-value=1.4e-10 Score=127.81 Aligned_cols=343 Identities=15% Similarity=0.177 Sum_probs=249.4
Q ss_pred HHHHHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHH
Q 005282 69 KTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPH 147 (704)
Q Consensus 69 ~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~ 147 (704)
+-+.-.+..++. +++....+ +..+.+-|.++++ .++..|+++|+++.. ++.. ...++.
T Consensus 88 rl~Yl~~~~~~~~~~e~~~l~-----in~l~kDL~~~n~----------~vr~lAL~~L~~i~~-~~~~-----~~l~~~ 146 (618)
T 1w63_A 88 RIGYLGAMLLLDERQDVHLLM-----TNCIKNDLNHSTQ----------FVQGLALCTLGCMGS-SEMC-----RDLAGE 146 (618)
T ss_dssp HHHHHHHHHHCCCCHHHHHHH-----HHHHHHHHSCSSS----------HHHHHHHHHHHHHCC-HHHH-----HHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHH-----HHHHHHhcCCCCH----------hHHHHHHHHHHhcCC-HHHH-----HHHHHH
Confidence 333334444444 34443333 6778888888765 899999999999984 3332 245678
Q ss_pred HHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchh
Q 005282 148 LVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDEN 227 (704)
Q Consensus 148 L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 227 (704)
+..++.+.+. .++..|+.++.++...+++.. .++++.+..++.+.++.++..|+.+|..++..+++.
T Consensus 147 l~~~L~~~~~--------~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~ 213 (618)
T 1w63_A 147 VEKLLKTSNS--------YLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDM 213 (618)
T ss_dssp HHHHHHSCCH--------HHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHH
T ss_pred HHHHHcCCCH--------HHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHH
Confidence 8888887654 999999999999998776532 267888899999999999999999999999654443
Q ss_pred hHHhHhcCChHHHHHhhcC---------------CCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhc-----
Q 005282 228 KKLIVECNALPTLVLMLRS---------------EDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLS----- 287 (704)
Q Consensus 228 ~~~~~~~~~i~~L~~lL~~---------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~----- 287 (704)
...+ ...++.++..|.+ .++..+..++.+|+.++..++... ....+.|..++.
T Consensus 214 ~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~-----~~~~~~L~~l~~~~~~~ 286 (618)
T 1w63_A 214 LAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSS-----EAMNDILAQVATNTETS 286 (618)
T ss_dssp HHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHHHTSCCS
T ss_pred HHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHHHHhccccc
Confidence 2222 2467888877653 488999999999999987765432 245556666653
Q ss_pred -CCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHH
Q 005282 288 -SSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLL 366 (704)
Q Consensus 288 -~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~ 366 (704)
+.+..+...|+.++..+.. .+ .+. ..+++.|..++.++++.++..|+.+|..++...+ ..+ ......++
T Consensus 287 ~~~~~aV~~ea~~~i~~l~~-~~----~l~-~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p---~~~-~~~~~~i~ 356 (618)
T 1w63_A 287 KNVGNAILYETVLTIMDIKS-ES----GLR-VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH---NAV-QRHRSTIV 356 (618)
T ss_dssp STHHHHHHHHHHHHHHHSCC-CH----HHH-HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH---HHH-GGGHHHHH
T ss_pred cchHHHHHHHHHHHHHhcCC-CH----HHH-HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH---HHH-HHHHHHHH
Confidence 2234678888888888642 11 111 2467889999999999999999999999986432 122 23556788
Q ss_pred HhhcCCChhHHHHHHHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhc
Q 005282 367 KLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVA 446 (704)
Q Consensus 367 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~ 446 (704)
.++.+.+..++..++.+|..++... +...+ ++.++..+...
T Consensus 357 ~~l~d~d~~Ir~~alelL~~l~~~~-nv~~i--------------------------------------v~eL~~~l~~~ 397 (618)
T 1w63_A 357 DCLKDLDVSIKRRAMELSFALVNGN-NIRGM--------------------------------------MKELLYFLDSC 397 (618)
T ss_dssp HGGGSSCHHHHHHHHHHHHHHCCSS-STHHH--------------------------------------HHHHHHHHHHC
T ss_pred HHccCCChhHHHHHHHHHHHHcccc-cHHHH--------------------------------------HHHHHHHHHhC
Confidence 9999999999999999999997643 23332 33567777888
Q ss_pred cHHHHHHHHHHHHhccCC-CccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282 447 DRAVKRRVTLALAHLCAP-DDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKA 506 (704)
Q Consensus 447 ~~~v~~~a~~~L~~l~~~-~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 506 (704)
+.+++..++.+|+.++.. +... ...++.|++++......++..+...+..+..+.
T Consensus 398 d~e~r~~~v~~I~~la~k~~~~~-----~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~ 453 (618)
T 1w63_A 398 EPEFKADCASGIFLAAEKYAPSK-----RWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNS 453 (618)
T ss_dssp CHHHHHHHHHHHHHHHHSSCCCH-----HHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHHhCccH-----HHHHHHHHHHHHhccchhHHHHHHHHHHHHhcC
Confidence 999999999999999653 2211 234788899998877788888888999888764
No 73
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.41 E-value=1.5e-12 Score=151.40 Aligned_cols=434 Identities=15% Similarity=0.116 Sum_probs=261.8
Q ss_pred HHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcC-hhH-HHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHH
Q 005282 47 IRAQIDILNSKFSSDETDRAAAKTASHALVEFAKN-EEI-VSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAF 124 (704)
Q Consensus 47 ~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~-~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~ 124 (704)
.+.+++.+...+..++.+..++..++.++.++... ... ........+++.+.+.+.+.+ ++++..++.
T Consensus 170 ~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~----------~~vr~~a~~ 239 (876)
T 1qgr_A 170 SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD----------TRVRVAALQ 239 (876)
T ss_dssp HHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSS----------HHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCC----------HHHHHHHHH
Confidence 45556666666654432455788899998887642 111 000111124677777776554 489999999
Q ss_pred HHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChh------------------h
Q 005282 125 ALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENAN------------------I 185 (704)
Q Consensus 125 ~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~------------------~ 185 (704)
+|..++ ..+..-...+....++.++..+.+.+. .++..++..+..++..... .
T Consensus 240 ~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (876)
T 1qgr_A 240 NLVKIMSLYYQYMETYMGPALFAITIEAMKSDID--------EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTS 311 (876)
T ss_dssp HHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCch--------HHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchh
Confidence 999999 454433333333566777766654332 8899999999888753210 0
Q ss_pred hhhh--hccCCcHHHHHHhc-------CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHH
Q 005282 186 KTRV--RVEDGIPPLVELLK-------FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAV 256 (704)
Q Consensus 186 ~~~~--~~~~~i~~L~~ll~-------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~ 256 (704)
.... .-...++.++..+. ++++.++..+..++..++...++ .+. ..+++.+...+.++++.+|..++
T Consensus 312 ~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~~~-~~~l~~l~~~l~~~~~~~r~~a~ 387 (876)
T 1qgr_A 312 KFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV-PHVLPFIKEHIKNPDWRYRDAAV 387 (876)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GGH-HHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH---hhH-HHHHHHHHHHccCCChHHHHHHH
Confidence 0000 01234666777775 23568899999999999853221 122 23566777788889999999999
Q ss_pred HHHHHHhcCCh-hhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcch-HHHHhcCChHHHHHhhCCCCHH
Q 005282 257 GVIGNLVHSSP-SIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSK-VHIVQRGAVRPLIEMLQSPDSQ 334 (704)
Q Consensus 257 ~~L~~l~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~i~~L~~ll~~~~~~ 334 (704)
++++.++.... ...... -..+++.++..+.++++.++..|+++|++++...+... ..-.-..+++.|+..+.++ +.
T Consensus 388 ~~l~~i~~~~~~~~~~~~-~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~ 465 (876)
T 1qgr_A 388 MAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PR 465 (876)
T ss_dssp HHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HH
T ss_pred HHHHHHHcCCCHHHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HH
Confidence 99999997643 222222 24578899999999999999999999999986533210 0001124577888888775 88
Q ss_pred HHHHHHHHHHHhhcCCc--------------hhhhHHhhCChHHHHHhhcCC---ChhHHHHHHHHHHHcccC-CchhhH
Q 005282 335 LKEMSAFALGRLAQDTH--------------NQAGIAQDGGILPLLKLLDSK---NGSLQHNAAFALYGLADN-EDNVAD 396 (704)
Q Consensus 335 v~~~a~~~L~~l~~~~~--------------~~~~~~~~~~~~~L~~ll~~~---~~~v~~~a~~~L~~l~~~-~~~~~~ 396 (704)
++..++++|.+++.... ....-.-...++.|++++... +..++..+..++..++.. +.....
T Consensus 466 v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~ 545 (876)
T 1qgr_A 466 VASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYP 545 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHH
T ss_pred HHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHH
Confidence 99999999999985421 000001123556677777553 457888888888888742 222211
Q ss_pred HHhhCCccccccccc----------c-cc----cc-hHHHHHHHHHHHH--------HhhcchhHHHHHHHhhcc--HHH
Q 005282 397 LVRVGGVQKLQDGEF----------T-VQ----PT-KDCVARTLKRLEE--------KVHGRVLNHLLYLLRVAD--RAV 450 (704)
Q Consensus 397 l~~~g~i~~l~~~~~----------~-~~----~~-~~~~~~~~~~~~~--------~~~~~~~~~L~~ll~~~~--~~v 450 (704)
++. ..++.+.+... . .. +. ...+...+..+.. .+...+++.++.++.... +.+
T Consensus 546 ~~~-~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v 624 (876)
T 1qgr_A 546 AVQ-KTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGV 624 (876)
T ss_dssp HHH-HHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCc
Confidence 111 11111110000 0 00 00 1112222222211 113346777777777654 378
Q ss_pred HHHHHHHHHhccCC--CccceeeecCCcHHHHHHHHhhc-chhhhhhHHHHHHHHhhhcC
Q 005282 451 KRRVTLALAHLCAP--DDCKTIFIDNNGLELLLGLLEST-SVKQREESSVALYKLATKAT 507 (704)
Q Consensus 451 ~~~a~~~L~~l~~~--~~~~~~l~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~L~~~~~ 507 (704)
+..++.++..++.. ......+ ...++.|...+.+. ++.++..|..++..++....
T Consensus 625 ~~~a~~~l~~l~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~ 682 (876)
T 1qgr_A 625 QEDALMAVSTLVEVLGGEFLKYM--EAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQ 682 (876)
T ss_dssp HHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHG
T ss_pred cHHHHHHHHHHHHHHHhhHHHHH--HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHH
Confidence 89999999998542 2222221 24678888888875 88999999999999988653
No 74
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.40 E-value=6.5e-12 Score=145.74 Aligned_cols=433 Identities=15% Similarity=0.107 Sum_probs=262.2
Q ss_pred HHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcC-hhH-HHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHH
Q 005282 47 IRAQIDILNSKFSSDETDRAAAKTASHALVEFAKN-EEI-VSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAF 124 (704)
Q Consensus 47 ~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~-~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~ 124 (704)
.+.+++.+...+.+.+.+..++..++.++..+..- ... ........+++.+.+.+.+.+ ++++..++.
T Consensus 177 ~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~----------~~~r~~a~~ 246 (861)
T 2bpt_A 177 SNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAED----------IEVQAAAFG 246 (861)
T ss_dssp HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSC----------HHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCC----------HHHHHHHHH
Confidence 44456666555554433456788888888876431 110 000001124667777776654 499999999
Q ss_pred HHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhh--------------hhh-
Q 005282 125 ALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANI--------------KTR- 188 (704)
Q Consensus 125 ~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~--------------~~~- 188 (704)
+|..++ ..+..-........++.+...+.+.+ ..++..++.++..++...... ...
T Consensus 247 ~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~--------~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (861)
T 2bpt_A 247 CLCKIMSKYYTFMKPYMEQALYALTIATMKSPN--------DKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFA 318 (861)
T ss_dssp HHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSS--------HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc--------HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHH
Confidence 999999 43332222221244555555554433 389999999999887532110 000
Q ss_pred -hhccCCcHHHHHHhcC-------CCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHH
Q 005282 189 -VRVEDGIPPLVELLKF-------VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIG 260 (704)
Q Consensus 189 -~~~~~~i~~L~~ll~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~ 260 (704)
-.-...+|.++..+.. +++.++..+..+|..++...+ ..+. ..+++.+...+.+.++.+|..++++++
T Consensus 319 ~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~---~~~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~ 394 (861)
T 2bpt_A 319 LSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG---NHIL-EPVLEFVEQNITADNWRNREAAVMAFG 394 (861)
T ss_dssp HHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG---GGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc---HhHH-HHHHHHHHHHcCCCChhHHHHHHHHHH
Confidence 0113457777777764 235789999999999985222 1111 234666777778889999999999999
Q ss_pred HHhcCCh-hhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcch-HHHHhcCChHHHHHhhCCCCHHHHHH
Q 005282 261 NLVHSSP-SIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSK-VHIVQRGAVRPLIEMLQSPDSQLKEM 338 (704)
Q Consensus 261 ~l~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~i~~L~~ll~~~~~~v~~~ 338 (704)
.++.... ....... ..+++.++..+.++++.++..+++++++++....... ..-.-..+++.++..+.+. +.++..
T Consensus 395 ~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~ 472 (861)
T 2bpt_A 395 SIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATN 472 (861)
T ss_dssp HTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHH
T ss_pred HHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHH
Confidence 9996642 2222222 2468888899999999999999999999875321100 0001124577888888776 899999
Q ss_pred HHHHHHHhhcCCc----hhhhHHhhCChHHHHHhhcCC--ChhHHHHHHHHHHHccc-CCchhhHHHhhCCccccccccc
Q 005282 339 SAFALGRLAQDTH----NQAGIAQDGGILPLLKLLDSK--NGSLQHNAAFALYGLAD-NEDNVADLVRVGGVQKLQDGEF 411 (704)
Q Consensus 339 a~~~L~~l~~~~~----~~~~~~~~~~~~~L~~ll~~~--~~~v~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~l~~~~~ 411 (704)
++++|.+++.... ....-.-...++.+++++.+. ++.++..++.++..++. .++....... ..++.+.+...
T Consensus 473 a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~ 551 (861)
T 2bpt_A 473 CSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLG 551 (861)
T ss_dssp HHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHH
Confidence 9999999986421 111111134466777888753 37899999999999985 3322221111 11111111000
Q ss_pred c----------------cccchHHHHHHHHHHHHHh-------hcchhHHHHHHHhhccH-HHHHHHHHHHHhccCC--C
Q 005282 412 T----------------VQPTKDCVARTLKRLEEKV-------HGRVLNHLLYLLRVADR-AVKRRVTLALAHLCAP--D 465 (704)
Q Consensus 412 ~----------------~~~~~~~~~~~~~~~~~~~-------~~~~~~~L~~ll~~~~~-~v~~~a~~~L~~l~~~--~ 465 (704)
. .......+...+..+.... ...+++.++..+...+. .++..++.+++.++.. .
T Consensus 552 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~ 631 (861)
T 2bpt_A 552 QTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGK 631 (861)
T ss_dssp HHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGG
T ss_pred HHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhh
Confidence 0 0000011122222222211 23466777788877766 8999999999988542 2
Q ss_pred ccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282 466 DCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKA 506 (704)
Q Consensus 466 ~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 506 (704)
+....+ ...++.|...+.+.++.++..|..++..+++..
T Consensus 632 ~~~~~l--~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~ 670 (861)
T 2bpt_A 632 GFEKYL--ETFSPYLLKALNQVDSPVSITAVGFIADISNSL 670 (861)
T ss_dssp GGHHHH--HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHT
T ss_pred hHHHHH--HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh
Confidence 222211 246788888887788889999999999998765
No 75
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.38 E-value=1.5e-11 Score=116.01 Aligned_cols=190 Identities=24% Similarity=0.289 Sum_probs=158.0
Q ss_pred cCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchH
Q 005282 234 CNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKV 313 (704)
Q Consensus 234 ~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 313 (704)
.+.++.|+..|.++++.++..++..|+.+.. .+.++.|+.++.++++.++..++.+|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 4568999999999999999999999998752 2468899999999999999999999998742
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCch
Q 005282 314 HIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDN 393 (704)
Q Consensus 314 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 393 (704)
.+.++.|+.++.++++.++..++++|+.+.. .+.++.|+.++.+.++.++..|+.+|..+...
T Consensus 80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~--- 142 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGDE--- 142 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG---
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH---
Confidence 3468999999999999999999999998853 24678899999999999999999999998321
Q ss_pred hhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCccceeeec
Q 005282 394 VADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFID 473 (704)
Q Consensus 394 ~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~ 473 (704)
..++.|..++.++++.++..|+.+|+.+. .
T Consensus 143 ----------------------------------------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----------~ 172 (211)
T 3ltm_A 143 ----------------------------------------RAVEPLIKALKDEDGWVRQSAADALGEIG----------G 172 (211)
T ss_dssp ----------------------------------------GGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------S
T ss_pred ----------------------------------------HHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------c
Confidence 13456778888899999999999999993 2
Q ss_pred CCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhcCC
Q 005282 474 NNGLELLLGLLESTSVKQREESSVALYKLATKATS 508 (704)
Q Consensus 474 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~ 508 (704)
..+++.|..++.++++.+|..|..+|.++..+...
T Consensus 173 ~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~~ 207 (211)
T 3ltm_A 173 ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNHH 207 (211)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHC-------
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCC
Confidence 46789999999999999999999999999887654
No 76
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.38 E-value=2e-11 Score=130.50 Aligned_cols=354 Identities=12% Similarity=0.087 Sum_probs=232.7
Q ss_pred HHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcC-----------------hhHHHHHHhCCChHHHHhhccCCCcCCCC
Q 005282 48 RAQIDILNSKFSSDETDRAAAKTASHALVEFAKN-----------------EEIVSLIVDNGAVPALVEHLQTPPQLTNA 110 (704)
Q Consensus 48 ~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~-----------------~~~~~~l~~~g~i~~L~~lL~~~~~~~~~ 110 (704)
+..+..|..++...+.+..++..|+..|.+.... ++.+. .+-..|++.|.+.+.
T Consensus 34 ~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~-----~ik~~ll~~l~~~~~---- 104 (462)
T 1ibr_B 34 PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARR-----EVKNYVLQTLGTETY---- 104 (462)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHH-----HHHHHHHHHTTCCCS----
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHH-----HHHHHHHHHhCCCCc----
Confidence 4444455555544444566788888888887542 12212 234567788877765
Q ss_pred CCCCchHHHHHHHHHHHhhcC--ChhhHHHHHHcCCcHHHHHHHhhcc-CCCCCcchhHHHHHHHHHHHHhhhcC-hhhh
Q 005282 111 QIPYEHEVEKECAFALGLLAV--KPEHQQIIVDTGALPHLVSLLKQYK-NGGNSRALSGVIRRAADAITNLAHEN-ANIK 186 (704)
Q Consensus 111 ~~~~d~~v~~~a~~~L~~l~~--~~~~~~~~~~~g~l~~L~~lL~~~~-~~~~~~~~~~~~~~a~~~L~~l~~~~-~~~~ 186 (704)
.+ ..++.+++.++. .+... -.+.++.|+..+.+.. + +.++..++.+|..++... +..-
T Consensus 105 ------~v-~~~~~~i~~ia~~~~~~~~----w~~ll~~L~~~l~~~~~~-------~~~r~~al~~l~~l~~~~~~~~~ 166 (462)
T 1ibr_B 105 ------RP-SSASQCVAGIACAEIPVNQ----WPELIPQLVANVTNPNST-------EHMKESTLEAIGYICQDIDPEQL 166 (462)
T ss_dssp ------SS-CSHHHHHHHHHHHHGGGTC----CTTHHHHHHHHHHCTTCC-------HHHHHHHHHHHHHHHHHSCGGGT
T ss_pred ------hh-hHHHHHHHHHHHHhccccc----cHHHHHHHHHHhccCCCC-------HHHHHHHHHHHHHHHHhCCchhh
Confidence 56 789999999982 23210 1356788888887651 1 288999999999999643 2211
Q ss_pred hhhhccCCcHHHHHHhcCC--CHHHHHHHHHHHHHhccCCchhhH-HhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 005282 187 TRVRVEDGIPPLVELLKFV--DVKVQRAAAGALRTLAFKNDENKK-LIVECNALPTLVLMLRSEDASVHFEAVGVIGNLV 263 (704)
Q Consensus 187 ~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 263 (704)
. -.....++.++..+.++ ++.+|..|+.++.++......... .....-+++.+...+.++++.++..++++|..++
T Consensus 167 ~-~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~ 245 (462)
T 1ibr_B 167 Q-DKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIM 245 (462)
T ss_dssp G-GGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred H-hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 1 11234677888888877 799999999999997642211110 0011113666667777889999999999999998
Q ss_pred cCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccC------------------CcchHHH--HhcCChHH
Q 005282 264 HSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAAD------------------SNSKVHI--VQRGAVRP 323 (704)
Q Consensus 264 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~------------------~~~~~~~--~~~~~i~~ 323 (704)
...+.........++++.++..+.+.+++++..++..+..++... ......+ .-..+++.
T Consensus 246 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~ 325 (462)
T 1ibr_B 246 SLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPI 325 (462)
T ss_dssp HHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHH
Confidence 654432211111156777778888888999999999988887531 0011111 01235666
Q ss_pred HHHhhCC-------CCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhH
Q 005282 324 LIEMLQS-------PDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVAD 396 (704)
Q Consensus 324 L~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 396 (704)
++..+.. .+..++..|+.+|..++..-.. .+. ...++.+...+.+.++.+|..|+.+|+.++.....
T Consensus 326 l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~--- 399 (462)
T 1ibr_B 326 LTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP--- 399 (462)
T ss_dssp HHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCT---
T ss_pred HHHHHHhcccccccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcH---
Confidence 7777753 2357899999999999865431 122 24556677888899999999999999999863210
Q ss_pred HHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCC
Q 005282 397 LVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAP 464 (704)
Q Consensus 397 l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 464 (704)
..+... ...+++.++..+.++++.++..|+++|++++..
T Consensus 400 ----~~~~~~-------------------------l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 400 ----SQLKPL-------------------------VIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp ----TTTCTT-------------------------TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHH-------------------------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 001110 123678899999999999999999999999653
No 77
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.37 E-value=5e-11 Score=138.53 Aligned_cols=396 Identities=12% Similarity=0.060 Sum_probs=256.8
Q ss_pred HHHHHHhhhccCCchhhHHHHHHHHHHHHHhhc-C----------------hhHHHHHHhCCChHHHHhhccCCCcCCCC
Q 005282 48 RAQIDILNSKFSSDETDRAAAKTASHALVEFAK-N----------------EEIVSLIVDNGAVPALVEHLQTPPQLTNA 110 (704)
Q Consensus 48 ~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~-~----------------~~~~~~l~~~g~i~~L~~lL~~~~~~~~~ 110 (704)
+..+..|...+.+.+.+..++..|+..|.+... . ++.+.. +.+.+++.|.+++.
T Consensus 34 ~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~~~~~~~-----ik~~ll~~l~~~~~---- 104 (876)
T 1qgr_A 34 PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARRE-----VKNYVLHTLGTETY---- 104 (876)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHH-----HHHHHHHHTTTCCS----
T ss_pred hhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhccCCHHHHHH-----HHHHHHHHhCCCcH----
Confidence 445555555554443455678888888888543 1 122121 23447888877654
Q ss_pred CCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcC-hhhhhhh
Q 005282 111 QIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHEN-ANIKTRV 189 (704)
Q Consensus 111 ~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~ 189 (704)
.+ ..++.+++.++....... .-...++.+...+.+... ++.++..++.+|..++... ++. ..-
T Consensus 105 ------~~-~~~~~~l~~i~~~~~~~~--~w~~ll~~l~~~l~~~~~------~~~~r~~al~~l~~l~~~~~~~~-~~~ 168 (876)
T 1qgr_A 105 ------RP-SSASQCVAGIACAEIPVN--QWPELIPQLVANVTNPNS------TEHMKESTLEAIGYICQDIDPEQ-LQD 168 (876)
T ss_dssp ------SS-CHHHHHHHHHHHHHGGGT--CCTTHHHHHHHHHHCTTC------CHHHHHHHHHHHHHHHHHSCHHH-HGG
T ss_pred ------HH-HHHHHHHHHHHHhhCccc--ccHHHHHHHHHHHhCCCC------CHHHHHHHHHHHHHHHHhcCHhh-HHh
Confidence 56 788899998882211000 012456777777766510 1288999999999998642 211 111
Q ss_pred hccCCcHHHHHHhcCC--CHHHHHHHHHHHHHhccCCchhhH-HhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q 005282 190 RVEDGIPPLVELLKFV--DVKVQRAAAGALRTLAFKNDENKK-LIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSS 266 (704)
Q Consensus 190 ~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 266 (704)
.....++.+...+.++ ++.++..++.++..++..-..... ......+++.+...+.++++.++..++.+|..++...
T Consensus 169 ~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~ 248 (876)
T 1qgr_A 169 KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLY 248 (876)
T ss_dssp GHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 2234566777778776 689999999999998753221110 0111125677777788889999999999999998765
Q ss_pred hhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCC------------------cchHHH--HhcCChHHHHH
Q 005282 267 PSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADS------------------NSKVHI--VQRGAVRPLIE 326 (704)
Q Consensus 267 ~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~------------------~~~~~~--~~~~~i~~L~~ 326 (704)
+......+...+++.++..+.+.++.++..++..+..++.... ...... .-..+++.++.
T Consensus 249 ~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~ 328 (876)
T 1qgr_A 249 YQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQ 328 (876)
T ss_dssp GGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHH
Confidence 5443333444678888888888888999999988888864310 000000 01235667777
Q ss_pred hhCC-------CCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCc--hhhHH
Q 005282 327 MLQS-------PDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNED--NVADL 397 (704)
Q Consensus 327 ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~~~l 397 (704)
.+.. .+..+|..+..+|..++..... .+ -...++.+...+.+.++.+|..++.+|+.++.... .....
T Consensus 329 ~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~-~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~ 405 (876)
T 1qgr_A 329 TLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DI-VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL 405 (876)
T ss_dssp HTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH
T ss_pred HhhcccccccccccHHHHHHHHHHHHHHHHCcH--hh-HHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 7752 3457889999999998864321 11 12345566677788899999999999999986322 11111
Q ss_pred HhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCccce--eeecCC
Q 005282 398 VRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKT--IFIDNN 475 (704)
Q Consensus 398 ~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~--~l~~~~ 475 (704)
...+++.++..+.++++.++..|+++|++++....... .-.-..
T Consensus 406 ----------------------------------~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~ 451 (876)
T 1qgr_A 406 ----------------------------------VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAP 451 (876)
T ss_dssp ----------------------------------HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHH
T ss_pred ----------------------------------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHH
Confidence 11357778888899999999999999999965322110 001125
Q ss_pred cHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282 476 GLELLLGLLESTSVKQREESSVALYKLATKA 506 (704)
Q Consensus 476 ~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 506 (704)
.++.|+..+.+. +.++..|+++|.+++...
T Consensus 452 ~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~ 481 (876)
T 1qgr_A 452 LLQCLIEGLSAE-PRVASNVCWAFSSLAEAA 481 (876)
T ss_dssp HHHHHHHHTTSC-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHHHHHHh
Confidence 677788877764 889999999999998764
No 78
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.36 E-value=8.2e-11 Score=136.45 Aligned_cols=394 Identities=13% Similarity=0.071 Sum_probs=255.7
Q ss_pred HHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcC------------------hhHHHHHHhCCChHHHHhhccCCCcCCC
Q 005282 48 RAQIDILNSKFSSDETDRAAAKTASHALVEFAKN------------------EEIVSLIVDNGAVPALVEHLQTPPQLTN 109 (704)
Q Consensus 48 ~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~------------------~~~~~~l~~~g~i~~L~~lL~~~~~~~~ 109 (704)
+..+..|..++.+.+.+..++..|+..|.+.... ++.+. .+-+.+++.|.+++.
T Consensus 38 ~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~l~~~~~~-----~ik~~ll~~l~~~~~--- 109 (861)
T 2bpt_A 38 LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKN-----QIKTNALTALVSIEP--- 109 (861)
T ss_dssp HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHHH-----HHHHHHHHHHTCSSH---
T ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHHhHhhhCCHHHHH-----HHHHHHHHHHCCCch---
Confidence 4445555555544444566788888888887532 11212 234677888877754
Q ss_pred CCCCCchHHHHHHHHHHHhhcC--ChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhh-h
Q 005282 110 AQIPYEHEVEKECAFALGLLAV--KPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANI-K 186 (704)
Q Consensus 110 ~~~~~d~~v~~~a~~~L~~l~~--~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~-~ 186 (704)
.+|..++.+|+.++. .|... -.+.++.|++.+.+..+ +.++..++.++..++..-... +
T Consensus 110 -------~vr~~~~~~l~~i~~~~~p~~~----w~~ll~~L~~~l~~~~~-------~~~r~~al~~l~~l~~~~~~~~~ 171 (861)
T 2bpt_A 110 -------RIANAAAQLIAAIADIELPHGA----WPELMKIMVDNTGAEQP-------ENVKRASLLALGYMCESADPQSQ 171 (861)
T ss_dssp -------HHHHHHHHHHHHHHHHHGGGTC----CHHHHHHHHHHTSTTSC-------HHHHHHHHHHHHHHHHTSSTTSS
T ss_pred -------HHHHHHHHHHHHHHHhhCcccc----cHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHHHHcCChhhh
Confidence 899999999999982 23100 01235666666655411 388999999999998642211 0
Q ss_pred -hhhhccCCcHHHHHHhcCC--CHHHHHHHHHHHHHhccCCchhhH-HhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHH
Q 005282 187 -TRVRVEDGIPPLVELLKFV--DVKVQRAAAGALRTLAFKNDENKK-LIVECNALPTLVLMLRSEDASVHFEAVGVIGNL 262 (704)
Q Consensus 187 -~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l 262 (704)
..-.....++.+...+.++ ++.++..++.++..+...-...-. .......++.+...+.++++.++..++.+|..+
T Consensus 172 ~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l 251 (861)
T 2bpt_A 172 ALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKI 251 (861)
T ss_dssp TTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 0011223466677777776 899999999999987532111100 000112466777788889999999999999999
Q ss_pred hcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCC-----------------cchHHHHhcCChHHHH
Q 005282 263 VHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADS-----------------NSKVHIVQRGAVRPLI 325 (704)
Q Consensus 263 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-----------------~~~~~~~~~~~i~~L~ 325 (704)
+...+..........+++.+...+.+.+..++..++.++..++.... ....... ..+++.++
T Consensus 252 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll 330 (861)
T 2bpt_A 252 MSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLL 330 (861)
T ss_dssp HHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHH
Confidence 86544332222322667777788888889999999999988875311 0111111 34677888
Q ss_pred HhhCC-------CCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHHH
Q 005282 326 EMLQS-------PDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLV 398 (704)
Q Consensus 326 ~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~ 398 (704)
..+.. .+..++..+..+|..++..... .+ -...++.+.+.+.+.++.+|..++.+++.++..... ..+.
T Consensus 331 ~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~--~~-~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~-~~~~ 406 (861)
T 2bpt_A 331 NLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN--HI-LEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDK-VQRT 406 (861)
T ss_dssp HHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG--GG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCH-HHHH
T ss_pred HHHHhcccccccccCcHHHHHHHHHHHHHHHccH--hH-HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCH-HHHH
Confidence 77764 2357899999999998864321 11 123345566777888999999999999999853210 1110
Q ss_pred hhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCcc----ceeeecC
Q 005282 399 RVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDC----KTIFIDN 474 (704)
Q Consensus 399 ~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~----~~~l~~~ 474 (704)
. ....+++.++..+.+.++.++..++++|+.++..-.. ... -.
T Consensus 407 ~-------------------------------~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~ 453 (861)
T 2bpt_A 407 Y-------------------------------YVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH--LP 453 (861)
T ss_dssp H-------------------------------HHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT--HH
T ss_pred H-------------------------------HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH--HH
Confidence 0 0012566778888888999999999999999643111 111 12
Q ss_pred CcHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282 475 NGLELLLGLLESTSVKQREESSVALYKLATKA 506 (704)
Q Consensus 475 ~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 506 (704)
..++.|+..+.+. +.++..|+++|.+++...
T Consensus 454 ~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~ 484 (861)
T 2bpt_A 454 GVVQACLIGLQDH-PKVATNCSWTIINLVEQL 484 (861)
T ss_dssp HHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccC-hHHHHHHHHHHHHHHHhc
Confidence 4577888888665 899999999999998865
No 79
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.34 E-value=2.6e-11 Score=114.39 Aligned_cols=189 Identities=27% Similarity=0.293 Sum_probs=156.9
Q ss_pred cCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 005282 142 TGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLA 221 (704)
Q Consensus 142 ~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 221 (704)
.+.++.|+..|.+.+. .++..++.+|+.+.. .+.++.|+.++.++++.++..++.+|..+.
T Consensus 18 ~~~~~~L~~~L~~~~~--------~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~ 78 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSY--------YVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG 78 (211)
T ss_dssp GGGHHHHHHHTTCSSH--------HHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC
T ss_pred HhHHHHHHHHHcCCCH--------HHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC
Confidence 3468889999986554 999999999998753 256889999999999999999999999986
Q ss_pred cCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHH
Q 005282 222 FKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLL 301 (704)
Q Consensus 222 ~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L 301 (704)
. .+.++.|+.++.++++.++..++++|+.+.. .+.++.|+.++.++++.++..++.+|
T Consensus 79 ~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL 136 (211)
T 3ltm_A 79 D-----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFAL 136 (211)
T ss_dssp C-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred C-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3 3467899999999999999999999999852 24678899999999999999999999
Q ss_pred HHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHH
Q 005282 302 GQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAA 381 (704)
Q Consensus 302 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~ 381 (704)
+++.. ...++.|..++.++++.++..++.+|+.+.. ...++.|..++.+.++.++..|.
T Consensus 137 ~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~ 195 (211)
T 3ltm_A 137 GEIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAV 195 (211)
T ss_dssp HHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHH
Confidence 99842 2468899999999999999999999999843 33567788999999999999999
Q ss_pred HHHHHcccCCc
Q 005282 382 FALYGLADNED 392 (704)
Q Consensus 382 ~~L~~l~~~~~ 392 (704)
.+|.++.....
T Consensus 196 ~aL~~~~~~~~ 206 (211)
T 3ltm_A 196 NYLETHKSFNH 206 (211)
T ss_dssp HHHHC------
T ss_pred HHHHhcCCCCC
Confidence 99999976443
No 80
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.31 E-value=9.4e-11 Score=109.58 Aligned_cols=186 Identities=25% Similarity=0.307 Sum_probs=157.6
Q ss_pred cCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchH
Q 005282 234 CNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKV 313 (704)
Q Consensus 234 ~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 313 (704)
.+..+.++..|.++++.++..|+++|+.+.. .+.++.|+.++.++++.++..++.+|+.+..
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 3457889999999999999999999998752 2468899999999999999999999998742
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCch
Q 005282 314 HIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDN 393 (704)
Q Consensus 314 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 393 (704)
...++.|+.++.++++.++..|+++|+++.. ...++.|+.++.+.++.++..|+.+|..+.. +
T Consensus 75 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~-- 137 (201)
T 3ltj_A 75 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-E-- 137 (201)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-G--
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-H--
Confidence 2468999999999999999999999998753 2467889999999999999999999999842 0
Q ss_pred hhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCccceeeec
Q 005282 394 VADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFID 473 (704)
Q Consensus 394 ~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~ 473 (704)
..++.|..++.++++.++..|+.+|+.+. .
T Consensus 138 ----------------------------------------~~~~~L~~~l~d~~~~vr~~A~~aL~~~~----------~ 167 (201)
T 3ltj_A 138 ----------------------------------------RAVEPLIKALKDEDGWVRQSAADALGEIG----------G 167 (201)
T ss_dssp ----------------------------------------GGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------S
T ss_pred ----------------------------------------HHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------c
Confidence 13556788888999999999999999993 2
Q ss_pred CCcHHHHHHHHhhcchhhhhhHHHHHHHHhh
Q 005282 474 NNGLELLLGLLESTSVKQREESSVALYKLAT 504 (704)
Q Consensus 474 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~ 504 (704)
..+++.|..++.++++.+|..|..+|..+..
T Consensus 168 ~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 168 ERVRAAMEKLAETGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999988653
No 81
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.29 E-value=6.6e-11 Score=110.66 Aligned_cols=184 Identities=28% Similarity=0.303 Sum_probs=156.9
Q ss_pred CCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhcc
Q 005282 143 GALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAF 222 (704)
Q Consensus 143 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 222 (704)
+..+.+++.|.+.+. .++..++.+|+.+.. .+.++.|+.++.++++.++..++.+|..+..
T Consensus 14 ~~~~~~i~~L~~~~~--------~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~ 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSY--------YVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD 74 (201)
T ss_dssp HHHHHHHHHTTCSCH--------HHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred cchHHHHHHhcCCCH--------HHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 456788899988765 999999999998753 2457889999999999999999999999863
Q ss_pred CCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHH
Q 005282 223 KNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLG 302 (704)
Q Consensus 223 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~ 302 (704)
.+.++.|+.++.++++.++..++++|+.+.. .+.++.|+.++.++++.++..++++|+
T Consensus 75 -----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~ 132 (201)
T 3ltj_A 75 -----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALG 132 (201)
T ss_dssp -----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2468899999999999999999999999852 236788999999999999999999999
Q ss_pred HHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHH
Q 005282 303 QFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAF 382 (704)
Q Consensus 303 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~ 382 (704)
++.. .+.++.|..++.++++.++..|+.+|+.+.. ...++.|..++.+.++.++..|..
T Consensus 133 ~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~ 191 (201)
T 3ltj_A 133 EIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVN 191 (201)
T ss_dssp HHTC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HhCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHH
Confidence 9842 3478899999999999999999999999832 235677888999999999999999
Q ss_pred HHHHcc
Q 005282 383 ALYGLA 388 (704)
Q Consensus 383 ~L~~l~ 388 (704)
+|..+.
T Consensus 192 aL~~l~ 197 (201)
T 3ltj_A 192 YLETHK 197 (201)
T ss_dssp HHHHCC
T ss_pred HHHHHH
Confidence 999884
No 82
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=99.25 E-value=2e-11 Score=97.45 Aligned_cols=80 Identities=24% Similarity=0.405 Sum_probs=65.6
Q ss_pred EEEEE-cCeEeehhHHHHhhcCHHHHHhhcC--CCCCCCCCceEcCCCCHHHHHHHHHHHh-----c---Cccc---cCh
Q 005282 538 VTFVV-EGKQFYAHRICLLASSDAFRAMFDG--GYKEKNAKDVEIPNIRWNVFELMMRFIY-----T---GNVD---VSV 603 (704)
Q Consensus 538 ~~~~~-~~~~~~~hk~iL~~~s~~f~~~f~~--~~~e~~~~~i~l~~~~~~~~~~~l~~~Y-----~---~~~~---~~~ 603 (704)
|+++. +|.+|.+||.+ +..|+||++||.+ ++.|+....|+++++++..++.+++|+| + +.++ ++.
T Consensus 4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~~~~~~~i~~~~i~~ 82 (97)
T 4ajy_C 4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAP 82 (97)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC--------CEEECTTSCHHHHHHHHHHHHHHHHHTTCCSCCCCCCCCG
T ss_pred EEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhcccCCCcCCCCcCcCCH
Confidence 44554 78999999999 9999999999987 6778778899999999999999999999 4 6676 889
Q ss_pred hhHHHHHHHHhhhCh
Q 005282 604 DIAQDLLRAADQYLL 618 (704)
Q Consensus 604 ~~~~~ll~~A~~~~~ 618 (704)
+++++|+.+|+++++
T Consensus 83 ~~l~eLl~AAnyL~~ 97 (97)
T 4ajy_C 83 EIALELLMAANFLDC 97 (97)
T ss_dssp GGHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhhCC
Confidence 999999999999873
No 83
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.19 E-value=1.8e-08 Score=110.53 Aligned_cols=356 Identities=18% Similarity=0.214 Sum_probs=240.4
Q ss_pred hHHHHHHHHHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHc
Q 005282 64 DRAAAKTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDT 142 (704)
Q Consensus 64 ~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~ 142 (704)
+...++-+.-.+..++. +++....+ +..+.+=|.++++ .++..|+++|+++.. ++..+
T Consensus 87 ~~~~Krl~YL~l~~~~~~~~e~~~L~-----iN~l~kDl~~~n~----------~ir~lALr~L~~i~~-~e~~~----- 145 (621)
T 2vgl_A 87 RYTEKQIGYLFISVLVNSNSELIRLI-----NNAIKNDLASRNP----------TFMGLALHCIANVGS-REMAE----- 145 (621)
T ss_dssp CHHHHHHHHHHHHHSCCCCHHHHHHH-----HHHHHHHHHSCCH----------HHHHHHHHHHHHHCC-HHHHH-----
T ss_pred CHHHHHHHHHHHHHHccCCcHHHHHH-----HHHHHHhcCCCCH----------HHHHHHHHHhhccCC-HHHHH-----
Confidence 33445555555666655 35544333 5667777777654 899999999999964 44333
Q ss_pred CCcHHHHHHH--hhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHh
Q 005282 143 GALPHLVSLL--KQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTL 220 (704)
Q Consensus 143 g~l~~L~~lL--~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l 220 (704)
..++.+.+.+ .+.++ -++..|+.++.++...+|+. +...+.++.+..+|.+.++.++..|+.++..+
T Consensus 146 ~l~~~v~~~l~~~d~~~--------~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i 214 (621)
T 2vgl_A 146 AFAGEIPKILVAGDTMD--------SVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLLNDQHLGVVTAATSLITTL 214 (621)
T ss_dssp HHTTHHHHHHHCSSSCH--------HHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCH--------HHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHhCCCCccHHHHHHHHHHHH
Confidence 3568888888 44443 89999999999999866643 22258899999999999999999999999999
Q ss_pred ccCCchhhHHhHhcCChHHHHHhhcCC-------------CHHHHHHHHHHHHHHhcC-ChhhHHHHHHcCCHHHHHHHh
Q 005282 221 AFKNDENKKLIVECNALPTLVLMLRSE-------------DASVHFEAVGVIGNLVHS-SPSIKKEVILAGALQPVIGLL 286 (704)
Q Consensus 221 ~~~~~~~~~~~~~~~~i~~L~~lL~~~-------------~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~ll 286 (704)
+..++..-...+ ...++.|.+++... ++..+...+..|..++.. ++.....+.+ .++.++..+
T Consensus 215 ~~~~~~~~~~~~-~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~ 291 (621)
T 2vgl_A 215 AQKNPEEFKTSV-SLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKA 291 (621)
T ss_dssp HHHCHHHHTTHH-HHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHH
T ss_pred HHhChHHHHHHH-HHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhh
Confidence 875544211111 11223333343221 688999999999988753 3343333222 233333322
Q ss_pred c---------CCC--hhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhh
Q 005282 287 S---------SSC--SESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAG 355 (704)
Q Consensus 287 ~---------~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 355 (704)
. +.+ ..+..+|+.++..+.. .++ +. ..++..|..++.++++.++..++.+|..++...+...
T Consensus 292 ~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~----~~-~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~- 364 (621)
T 2vgl_A 292 QEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPN----LL-VRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHE- 364 (621)
T ss_dssp HSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHH----HH-HHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHH-
T ss_pred ccCcccccccccchHHHHHHHHHHHHHhcCC-cHH----HH-HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHH-
Confidence 1 112 2667778888887742 111 11 2357788899999999999999999999997653222
Q ss_pred HHhhCChHHHHHhhc-CCChhHHHHHHHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcc
Q 005282 356 IAQDGGILPLLKLLD-SKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGR 434 (704)
Q Consensus 356 ~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (704)
.+ ......++.++. +.+..++..++.+|..++. +++...++
T Consensus 365 ~~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~-~~Nv~~Iv------------------------------------ 406 (621)
T 2vgl_A 365 AV-KTHIETVINALKTERDVSVRQRAVDLLYAMCD-RSNAQQIV------------------------------------ 406 (621)
T ss_dssp HH-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC-HHHHHHHH------------------------------------
T ss_pred HH-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC-hhhHHHHH------------------------------------
Confidence 22 345677888888 8999999999999999974 33444433
Q ss_pred hhHHHHHHHhhccHHHHHHHHHHHHhccCC-CccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282 435 VLNHLLYLLRVADRAVKRRVTLALAHLCAP-DDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKA 506 (704)
Q Consensus 435 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 506 (704)
..|...+...+.+.+..++.+++.++.. +... .--+..|++++......+...+...+.++....
T Consensus 407 --~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~-----~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~ 472 (621)
T 2vgl_A 407 --AEMLSYLETADYSIREEIVLKVAILAEKYAVDY-----TWYVDTILNLIRIAGDYVSEEVWYRVIQIVINR 472 (621)
T ss_dssp --HHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSST-----HHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGG
T ss_pred --HHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcH-----HHHHHHHHHHHHhhcccchHHHHHHHHHHHhCC
Confidence 3567777788899999999999998641 1111 234778889888766667777888888887654
No 84
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.15 E-value=2e-09 Score=129.38 Aligned_cols=405 Identities=14% Similarity=0.083 Sum_probs=246.1
Q ss_pred hHHHHHHHHHHHHHhhcCh------hHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChh-h
Q 005282 64 DRAAAKTASHALVEFAKNE------EIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPE-H 135 (704)
Q Consensus 64 ~~~~~~~a~~~L~~l~~~~------~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~-~ 135 (704)
+...+..|...|.+....+ ..... +++.+++.|.+.+ +.+|..|+.+|++++ ..++ .
T Consensus 19 d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~-----il~~Ll~~L~d~~----------~~vR~~A~~~L~~l~~~~~~~~ 83 (1230)
T 1u6g_C 19 DKDFRFMATNDLMTELQKDSIKLDDDSERK-----VVKMILKLLEDKN----------GEVQNLAVKCLGPLVSKVKEYQ 83 (1230)
T ss_dssp SHHHHHHHHHHHHHHTSSSCCSCCTTHHHH-----HHHHHHHHTTCSS----------HHHHHHHHHHHHHHHTTSCHHH
T ss_pred CHhHHHHHHHHHHHHHcccccCCChhHHHH-----HHHHHHHHhcCCC----------HHHHHHHHHHHHHHHHhCCHHH
Confidence 3446777877777665422 22222 3788999998654 499999999999999 3332 2
Q ss_pred HHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhh-----hhhhccCCcHHHHHHhc-CCCHHH
Q 005282 136 QQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIK-----TRVRVEDGIPPLVELLK-FVDVKV 209 (704)
Q Consensus 136 ~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~-----~~~~~~~~i~~L~~ll~-~~~~~~ 209 (704)
.. ..++.++..+.+.+. .++..++.+|+.++....... ..-.....+|.|+..+. ++++.+
T Consensus 84 ~~-----~i~~~Ll~~l~d~~~--------~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~ 150 (1230)
T 1u6g_C 84 VE-----TIVDTLCTNMLSDKE--------QLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSV 150 (1230)
T ss_dssp HH-----HHHHHHHHHTTCSSS--------HHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHH
T ss_pred HH-----HHHHHHHHHhcCCcH--------HHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHH
Confidence 11 245667777665554 889999999999885433210 11123456888999998 588999
Q ss_pred HHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCC
Q 005282 210 QRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSS 289 (704)
Q Consensus 210 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~ 289 (704)
+..|+.++..++...+..-.. .-...++.++..+.++++.+|..|+.+|+.++...+.. + -...++.++..+.+.
T Consensus 151 ~~~al~~l~~~~~~~~~~l~~-~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~-~~~~l~~l~~~L~~~ 225 (1230)
T 1u6g_C 151 QLEALDIMADMLSRQGGLLVN-FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---V-FVDLIEHLLSELSKN 225 (1230)
T ss_dssp HHHHHHHHHHHHHHTCSSCTT-THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhHhHHHH-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---H-HHHHHHHHHHHhccC
Confidence 999999999998522211111 11235677778888899999999999999998654321 1 234577888777654
Q ss_pred C-hhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHh
Q 005282 290 C-SESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKL 368 (704)
Q Consensus 290 ~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~l 368 (704)
+ ..++..++.+++.++...+..... .-..+++.++..+.+.++++|..++.++..++........-.-...++.+++.
T Consensus 226 ~~~~~r~~a~~~l~~l~~~~~~~~~~-~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~ 304 (1230)
T 1u6g_C 226 DSMSTTRTYIQCIAAISRQAGHRIGE-YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKY 304 (1230)
T ss_dssp CSSCSCTTHHHHHHHHHHHSSGGGTT-SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTC
T ss_pred CchhHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHH
Confidence 3 456777888888887644331111 11367899999999888999999999999988643221100111222333332
Q ss_pred hc-------------------------------------CCChhHHHHHHHHHHHcccC-CchhhHHHhhCCcccccccc
Q 005282 369 LD-------------------------------------SKNGSLQHNAAFALYGLADN-EDNVADLVRVGGVQKLQDGE 410 (704)
Q Consensus 369 l~-------------------------------------~~~~~v~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~l~~~~ 410 (704)
+. +..+.+|..|+.+|..++.. ++....+.. ..++.+....
T Consensus 305 l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l 383 (1230)
T 1u6g_C 305 LTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYK-TVSPALISRF 383 (1230)
T ss_dssp CCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHT-TTHHHHHSTT
T ss_pred hCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHH-HHHHHHHHHc
Confidence 21 11245788899999988762 222222221 2223332211
Q ss_pred cccccc-----hHHHHHHHHHH----------------------HHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccC
Q 005282 411 FTVQPT-----KDCVARTLKRL----------------------EEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCA 463 (704)
Q Consensus 411 ~~~~~~-----~~~~~~~~~~~----------------------~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 463 (704)
...... ..++...+... -......+++.+...+.+.++.++..++.+|+.++.
T Consensus 384 ~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~ 463 (1230)
T 1u6g_C 384 KEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVN 463 (1230)
T ss_dssp SCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 111111 11222222211 011233455566666888899999999999998854
Q ss_pred C-CccceeeecCCcHHHHHHHHhhcch--hhhhhHHHHHHHHhh
Q 005282 464 P-DDCKTIFIDNNGLELLLGLLESTSV--KQREESSVALYKLAT 504 (704)
Q Consensus 464 ~-~~~~~~l~~~~~i~~L~~ll~~~~~--~~~~~a~~~L~~L~~ 504 (704)
. +..-.. .-...++.+..++.+.++ .++..++..+..+..
T Consensus 464 ~~~~~l~~-~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~ 506 (1230)
T 1u6g_C 464 VLPGALTQ-HIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILC 506 (1230)
T ss_dssp HSTTTTGG-GHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHH
T ss_pred HchhhhHH-HHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHH
Confidence 2 111111 112456777788876654 788888888888765
No 85
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.11 E-value=4.8e-09 Score=126.13 Aligned_cols=399 Identities=12% Similarity=0.096 Sum_probs=252.8
Q ss_pred HHHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhc--Ch---hHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHH
Q 005282 46 DIRAQIDILNSKFSSDETDRAAAKTASHALVEFAK--NE---EIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEK 120 (704)
Q Consensus 46 ~~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~--~~---~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~ 120 (704)
..+.+++.|...+.+ +.+...+..|+.+|..+.. .+ .... .+++.+++.|.+++. .+|.
T Consensus 130 ~~~~llp~L~~~l~~-~~~~~~~~~al~~l~~~~~~~~~~l~~~~~-----~ll~~l~~~L~~~~~----------~vR~ 193 (1230)
T 1u6g_C 130 VCKKITGRLTSAIAK-QEDVSVQLEALDIMADMLSRQGGLLVNFHP-----SILTCLLPQLTSPRL----------AVRK 193 (1230)
T ss_dssp HHHHHHHHHHHHHSC-CSCHHHHHHHHHHHHHHHHHTCSSCTTTHH-----HHHHHHGGGGGCSSH----------HHHH
T ss_pred HHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHHHhHhHHHHHHH-----HHHHHHHHHHcCCcH----------HHHH
Confidence 356677777666653 2334578888888888763 11 1222 247888888887654 8999
Q ss_pred HHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHH
Q 005282 121 ECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVE 200 (704)
Q Consensus 121 ~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 200 (704)
.|+.+|+.++..... .+ -...++.++..|.+... +.++..++.+++.++...+. .-.-.-...++.++.
T Consensus 194 ~a~~al~~l~~~~~~--~~-~~~~l~~l~~~L~~~~~-------~~~r~~a~~~l~~l~~~~~~-~~~~~l~~l~~~ll~ 262 (1230)
T 1u6g_C 194 RTIIALGHLVMSCGN--IV-FVDLIEHLLSELSKNDS-------MSTTRTYIQCIAAISRQAGH-RIGEYLEKIIPLVVK 262 (1230)
T ss_dssp HHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCS-------SCSCTTHHHHHHHHHHHSSG-GGTTSCTTHHHHHHH
T ss_pred HHHHHHHHHHHhcCH--HH-HHHHHHHHHHHhccCCc-------hhHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHH
Confidence 999999999932211 11 22457888888877542 14556678888888754332 111123467889999
Q ss_pred HhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcC----------------------------------
Q 005282 201 LLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRS---------------------------------- 246 (704)
Q Consensus 201 ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~---------------------------------- 246 (704)
.+.+++++++..++.++..++...++...... ..+++.++..+..
T Consensus 263 ~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (1230)
T 1u6g_C 263 FCNVDDDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSD 341 (1230)
T ss_dssp HHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC---------------------------------
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhccccccc
Confidence 99988999999999999988763332111111 1223344333321
Q ss_pred ---CCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCc-------------
Q 005282 247 ---EDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSN------------- 310 (704)
Q Consensus 247 ---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~------------- 310 (704)
....+|..|+.++..++...+.....+ -...++.++..+.+.+..++..++.++..++.....
T Consensus 342 ~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~-~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 420 (1230)
T 1u6g_C 342 DDDMSWKVRRAAAKCLDAVVSTRHEMLPEF-YKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQ 420 (1230)
T ss_dssp ---CTTHHHHHHHHHHHHHHTTCCTTHHHH-HTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------
T ss_pred ccccCHHHHHHHHHHHHHHHHhchhHHHHH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCcccccc
Confidence 123578899999999986544322222 245778888888888899999999988877642111
Q ss_pred ---chHHH--HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCCh--hHHHHHHHH
Q 005282 311 ---SKVHI--VQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNG--SLQHNAAFA 383 (704)
Q Consensus 311 ---~~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~--~v~~~a~~~ 383 (704)
....+ .-..+++.+...++++++.++..++.+|+.++........-.-...++.++..+.+.++ .++..++..
T Consensus 421 ~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~ 500 (1230)
T 1u6g_C 421 GETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSC 500 (1230)
T ss_dssp CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred ccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 01111 11235566667788999999999999999988653221111123455677788877654 888899988
Q ss_pred HHHcccC--CchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhc
Q 005282 384 LYGLADN--EDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHL 461 (704)
Q Consensus 384 L~~l~~~--~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l 461 (704)
+..+... ++..... ...+++.++..+.+.+..++..++.++..+
T Consensus 501 l~~~~~~~~~~~~~~~----------------------------------l~~llp~L~~~l~d~~~~v~~~al~~l~~l 546 (1230)
T 1u6g_C 501 LYVILCNHSPQVFHPH----------------------------------VQALVPPVVACVGDPFYKITSEALLVTQQL 546 (1230)
T ss_dssp HHHHHHSSCGGGGHHH----------------------------------HTTTHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHhH----------------------------------HHHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 8887531 1111111 113567788888888888888888888887
Q ss_pred cC--CC---ccceee--ecCCcHHHHHHHH--hhcchhhhhhHHHHHHHHhhhcC
Q 005282 462 CA--PD---DCKTIF--IDNNGLELLLGLL--ESTSVKQREESSVALYKLATKAT 507 (704)
Q Consensus 462 ~~--~~---~~~~~l--~~~~~i~~L~~ll--~~~~~~~~~~a~~~L~~L~~~~~ 507 (704)
+. .+ .....+ .-...++.++..+ .+.++.+|..|+.++..|+...+
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g 601 (1230)
T 1u6g_C 547 VKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLG 601 (1230)
T ss_dssp HHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTG
T ss_pred HHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Confidence 52 11 000010 1124567777777 55778899999999999988764
No 86
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=99.09 E-value=3.1e-10 Score=97.48 Aligned_cols=98 Identities=15% Similarity=0.212 Sum_probs=83.5
Q ss_pred EEEEE-cCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhcCc------------------
Q 005282 538 VTFVV-EGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGN------------------ 598 (704)
Q Consensus 538 ~~~~~-~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~------------------ 598 (704)
|+++. +|+.|.+|+.+ +..|++|+.||.+.. ...|++++++...++.+++|+|...
T Consensus 4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~----~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~ 78 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLG----MDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDD 78 (141)
T ss_dssp EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHTC----CSSEECTTCCHHHHHHHHHHHHHHTTCC---------------
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcC----CCceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhh
Confidence 66666 78999999998 789999999998631 4589999999999999999999865
Q ss_pred --------cccChhhHHHHHHHHhhhChHhHHHHHHHHHHhhCChhhHHH
Q 005282 599 --------VDVSVDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIML 640 (704)
Q Consensus 599 --------~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~ 640 (704)
+.++.+++++|+.+|+|+++.+|.+.|.+++...+...+..+
T Consensus 79 i~~wD~~F~~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~ee 128 (141)
T 1fs1_B 79 IPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEE 128 (141)
T ss_dssp --HHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHH
T ss_pred hhHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHH
Confidence 557788999999999999999999999999977775555443
No 87
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.07 E-value=1.4e-07 Score=103.52 Aligned_cols=354 Identities=15% Similarity=0.118 Sum_probs=234.2
Q ss_pred HHHHHHHHHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHc
Q 005282 65 RAAAKTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDT 142 (704)
Q Consensus 65 ~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~ 142 (704)
...+.+++..+..+.. +.+. +.+....++++.+++. +.+..+.-++..++ .+++....
T Consensus 52 ~~~k~~~l~Kli~l~~~G~d~------s~~~~~vvkl~~s~~~----------~~Krl~YL~l~~~~~~~~e~~~L---- 111 (621)
T 2vgl_A 52 GYSKKKYVCKLLFIFLLGHDI------DFGHMEAVNLLSSNRY----------TEKQIGYLFISVLVNSNSELIRL---- 111 (621)
T ss_dssp HHHHHHHHHHHHHHHHHSCCC------CSCHHHHHHGGGCSCH----------HHHHHHHHHHHHSCCCCHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHcCCCC------chhHHHHHHHhcCCCH----------HHHHHHHHHHHHHccCCcHHHHH----
Confidence 3345555555554432 3221 3467788888888764 88988888999998 55554322
Q ss_pred CCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHh--cCCCHHHHHHHHHHHHHh
Q 005282 143 GALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELL--KFVDVKVQRAAAGALRTL 220 (704)
Q Consensus 143 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll--~~~~~~~~~~a~~~L~~l 220 (704)
++..+.+-+.++++ .++..|+.+|+++.. ++. ....++.+.+.+ .+.++.+|+.|+.++..+
T Consensus 112 -~iN~l~kDl~~~n~--------~ir~lALr~L~~i~~--~e~-----~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl 175 (621)
T 2vgl_A 112 -INNAIKNDLASRNP--------TFMGLALHCIANVGS--REM-----AEAFAGEIPKILVAGDTMDSVKQSAALCLLRL 175 (621)
T ss_dssp -HHHHHHHHHHSCCH--------HHHHHHHHHHHHHCC--HHH-----HHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHhcCCCCH--------HHHHHHHHHhhccCC--HHH-----HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 23455555665543 789999999999963 332 235678899999 889999999999999999
Q ss_pred ccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCC-----------
Q 005282 221 AFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSS----------- 289 (704)
Q Consensus 221 ~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~----------- 289 (704)
...+|+.. ...+.++.+.++|.+.++.|+..|+.++..++..++....... ...+..|..++..+
T Consensus 176 ~~~~p~~~---~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~-~~~~~~L~~ll~~~~~~~~~~~~~~ 251 (621)
T 2vgl_A 176 YRTSPDLV---PMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSV-SLAVSRLSRIVTSASTDLQDYTYYF 251 (621)
T ss_dssp HHHCGGGC---CCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHH-HHHHHHHHHHHHCCSSSCSTTEETT
T ss_pred HHhChhhc---CchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHH-HHHHHHHHHHHhCCCCCccchhhcC
Confidence 87444322 2257899999999999999999999999999976654211011 11233333444321
Q ss_pred --ChhHHHHHHHHHHHHhccCC-cchHHHHhcCChHHHHHhhC---------CC--CHHHHHHHHHHHHHhhcCCchhhh
Q 005282 290 --CSESKREAALLLGQFAAADS-NSKVHIVQRGAVRPLIEMLQ---------SP--DSQLKEMSAFALGRLAQDTHNQAG 355 (704)
Q Consensus 290 --~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~ll~---------~~--~~~v~~~a~~~L~~l~~~~~~~~~ 355 (704)
++..+...+..|..++..++ +....+. ..++.++..+. +. ...+...++.++..+...++.
T Consensus 252 ~~~~w~qi~il~ll~~~~~~~d~~~~~~l~--~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~--- 326 (621)
T 2vgl_A 252 VPAPWLSVKLLRLLQCYPPPEDPAVRGRLT--ECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNL--- 326 (621)
T ss_dssp EESHHHHHHHHHHGGGSSSCSSHHHHHHHH--HHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHH---
T ss_pred CCCchHHHHHHHHHHHhCCCCCHHHHHHHH--HHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHH---
Confidence 46677778888877764222 2222221 13333333221 11 236777888888887632211
Q ss_pred HHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcch
Q 005282 356 IAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRV 435 (704)
Q Consensus 356 ~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (704)
...++..|..++.+.++++|..++.+|..++....... ++. ..
T Consensus 327 --~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~-~~~----------------------------------~~ 369 (621)
T 2vgl_A 327 --LVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHE-AVK----------------------------------TH 369 (621)
T ss_dssp --HHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHH-HHH----------------------------------TT
T ss_pred --HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHH-HHH----------------------------------HH
Confidence 11345678888888999999999999999986432111 111 12
Q ss_pred hHHHHHHHh-hccHHHHHHHHHHHHhccCCCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282 436 LNHLLYLLR-VADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKA 506 (704)
Q Consensus 436 ~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 506 (704)
...++..+. +++..++..++..|..++..... ...+..|...+.+.+.+.+..+..++..++.+-
T Consensus 370 ~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~Nv------~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~ 435 (621)
T 2vgl_A 370 IETVINALKTERDVSVRQRAVDLLYAMCDRSNA------QQIVAEMLSYLETADYSIREEIVLKVAILAEKY 435 (621)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHHH------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHhHHHHHHHHHHHHcChhhH------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 334666677 88999999999999999765321 134666778888888999999999999998754
No 88
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.98 E-value=2.8e-09 Score=118.53 Aligned_cols=193 Identities=13% Similarity=0.141 Sum_probs=153.9
Q ss_pred hHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHH-HHhhccCCCCCcchhHHHHHHH
Q 005282 94 VPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVS-LLKQYKNGGNSRALSGVIRRAA 172 (704)
Q Consensus 94 i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~-lL~~~~~~~~~~~~~~~~~~a~ 172 (704)
+.++++.|+++++ +.|..|+++|++|+.++..+..+...|++..++. +|.+++. +++..|+
T Consensus 36 i~Pll~~L~S~~~----------~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~--------~Vr~~A~ 97 (684)
T 4gmo_A 36 ILPVLKDLKSPDA----------KSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNI--------DSRAAGW 97 (684)
T ss_dssp THHHHHHHSSSCC----------SHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCH--------HHHHHHH
T ss_pred HHHHHHHcCCCCH----------HHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCH--------HHHHHHH
Confidence 4556677888766 8999999999999999999999999999988665 5666554 9999999
Q ss_pred HHHHHhhhc-ChhhhhhhhccCCcHHHHHHhcCCC---------------------HHHHHHHHHHHHHhccCCchhhHH
Q 005282 173 DAITNLAHE-NANIKTRVRVEDGIPPLVELLKFVD---------------------VKVQRAAAGALRTLAFKNDENKKL 230 (704)
Q Consensus 173 ~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~---------------------~~~~~~a~~~L~~l~~~~~~~~~~ 230 (704)
++|+||+.+ .++....++..|++++|..++++.. ..+...++.+|++||.++.+....
T Consensus 98 gaLrnL~~~~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~ 177 (684)
T 4gmo_A 98 EILKVLAQEEEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEA 177 (684)
T ss_dssp HHHHHHHHHSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHhhcCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 999999964 5778888999999999999886211 235567889999999878888888
Q ss_pred hHhcCChHHHHHhhcC---CCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHH---HHHHHhcCCChhHHHHHHHHHHHH
Q 005282 231 IVECNALPTLVLMLRS---EDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQ---PVIGLLSSSCSESKREAALLLGQF 304 (704)
Q Consensus 231 ~~~~~~i~~L~~lL~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~---~L~~ll~~~~~~~~~~a~~~L~~l 304 (704)
+...++++.|+.+|.+ ...+++..|+.+|..++.+++...+.+.+.+... .+..+. ..+...+..++..|.|+
T Consensus 178 v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~-~~~~~~~~la~giL~Ni 256 (684)
T 4gmo_A 178 VATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLA-TGTDPRAVMACGVLHNV 256 (684)
T ss_dssp HHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHH-HSSCTTHHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHh-cCCcHHHHHHHHHHHhH
Confidence 8888999999998853 3468999999999999999988888888766433 333333 33445577888999987
Q ss_pred h
Q 005282 305 A 305 (704)
Q Consensus 305 ~ 305 (704)
.
T Consensus 257 ~ 257 (684)
T 4gmo_A 257 F 257 (684)
T ss_dssp H
T ss_pred h
Confidence 5
No 89
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=98.96 E-value=7.9e-11 Score=103.60 Aligned_cols=108 Identities=15% Similarity=0.294 Sum_probs=60.5
Q ss_pred EEEEE-cCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhcCc------------------
Q 005282 538 VTFVV-EGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGN------------------ 598 (704)
Q Consensus 538 ~~~~~-~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~------------------ 598 (704)
|+++. +|..|.+|+.+ +..|++|+.||.+.. ....|++++++...+..+++|+|...
T Consensus 6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~---~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~ 81 (160)
T 2p1m_A 6 IVLKSSDGESFEVEEAV-ALESQTIAHMVEDDC---VDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDD 81 (160)
T ss_dssp --CCC---------CHH-HHTCTTTC---------------CCTTSCHHHHHHHHHC-----------------------
T ss_pred EEEEcCCCCEEEECHHH-HHHhHHHHHHHHccC---CCCceeCCcCcHHHHHHHHHHHHHcccCCCcccccccccccccc
Confidence 55554 79999999998 779999999998753 34489999999999999999999875
Q ss_pred ---------cccChhhHHHHHHHHhhhChHhHHHHHHHHHHhhC---ChhhHHHHHHHHHHcC
Q 005282 599 ---------VDVSVDIAQDLLRAADQYLLEGLKRLCEYSIAQII---SVENIMLMYELSEAYN 649 (704)
Q Consensus 599 ---------~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~---~~~~~~~~~~~a~~~~ 649 (704)
+.++.+++++|+.+|+|+++.+|.+.|..++...+ +++.+-.++.+...|.
T Consensus 82 ~i~~wD~~Fl~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeir~~f~I~nd~t 144 (160)
T 2p1m_A 82 DLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFT 144 (160)
T ss_dssp -------------------CHHHHHHTTCHHHHHHHHHHHHHTTTTCCHHHHHHHTTCCCCCC
T ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCC
Confidence 34677789999999999999999999999998878 6666666555544443
No 90
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.89 E-value=1.2e-08 Score=113.56 Aligned_cols=201 Identities=17% Similarity=0.120 Sum_probs=152.7
Q ss_pred HHHHHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHH-hhccCCCcCCCCCCCCchHHHHHHHHHHH
Q 005282 49 AQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALV-EHLQTPPQLTNAQIPYEHEVEKECAFALG 127 (704)
Q Consensus 49 ~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~-~lL~~~~~~~~~~~~~d~~v~~~a~~~L~ 127 (704)
.++++|..+-+ .++..+..|+++|.+++.++..++.+...|+|..++ .+|.+++. +|+..|+++|+
T Consensus 35 ~i~Pll~~L~S---~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~----------~Vr~~A~gaLr 101 (684)
T 4gmo_A 35 KILPVLKDLKS---PDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNI----------DSRAAGWEILK 101 (684)
T ss_dssp TTHHHHHHHSS---SCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCH----------HHHHHHHHHHH
T ss_pred hHHHHHHHcCC---CCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCH----------HHHHHHHHHHH
Confidence 34444444333 233457899999999999999999999999988765 56777654 99999999999
Q ss_pred hhc--CChhhHHHHHHcCCcHHHHHHHhhccCC-----CCCc--------chhHHHHHHHHHHHHhhhcChhhhhhhhcc
Q 005282 128 LLA--VKPEHQQIIVDTGALPHLVSLLKQYKNG-----GNSR--------ALSGVIRRAADAITNLAHENANIKTRVRVE 192 (704)
Q Consensus 128 ~l~--~~~~~~~~~~~~g~l~~L~~lL~~~~~~-----~~~~--------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 192 (704)
||+ .+++.+..+...|++++|..++++.... .... -.+++...++.+|+++|..+......+...
T Consensus 102 nL~~~~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~ 181 (684)
T 4gmo_A 102 VLAQEEEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATK 181 (684)
T ss_dssp HHHHHSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTC
T ss_pred HHHhhcCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 999 6789999999999999999999763211 0000 023566788899999998888888888889
Q ss_pred CCcHHHHHHhcC---CCHHHHHHHHHHHHHhccCCchhhHHhHhcCChH---HHHHhhcCCCHHHHHHHHHHHHHHh
Q 005282 193 DGIPPLVELLKF---VDVKVQRAAAGALRTLAFKNDENKKLIVECNALP---TLVLMLRSEDASVHFEAVGVIGNLV 263 (704)
Q Consensus 193 ~~i~~L~~ll~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~---~L~~lL~~~~~~v~~~a~~~L~~l~ 263 (704)
++++.|+..|.+ ...+++..|+.+|+.++.++++..+.+.+.+... .+..+. ..+...+..+++.|.|+.
T Consensus 182 ~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~-~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 182 QTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLA-TGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHH-HSSCTTHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHh-cCCcHHHHHHHHHHHhHh
Confidence 999999999863 3468999999999999998888888888766533 333333 334445778889999875
No 91
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.74 E-value=1.7e-06 Score=74.19 Aligned_cols=217 Identities=21% Similarity=0.210 Sum_probs=171.5
Q ss_pred HhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHH
Q 005282 89 VDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGV 167 (704)
Q Consensus 89 ~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~ 167 (704)
.+..++..++.+|.++-. .|+..|+.++..++ ..|+....+. ..|+-+++.+.. ..+
T Consensus 29 ~d~~~l~~lI~~LDDDlw----------tV~kNAl~vi~~i~~~~~el~epl~-----~kL~vm~~ksEa-------Ipl 86 (253)
T 2db0_A 29 YDESVLKKLIELLDDDLW----------TVVKNAISIIMVIAKTREDLYEPML-----KKLFSLLKKSEA-------IPL 86 (253)
T ss_dssp HCHHHHHHHHHHTTCSCH----------HHHHHHHHHHHHHHTTCGGGHHHHH-----HHHHHHHHHCCS-------HHH
T ss_pred hhHHHHHHHHHHhccHHH----------HHHHhHHHHHHHHHHHhHHHHHHHH-----HHHHHHHhhccc-------Cch
Confidence 345668999999999876 89999999999999 7888766554 677888887764 366
Q ss_pred HHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCC
Q 005282 168 IRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSE 247 (704)
Q Consensus 168 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~ 247 (704)
......+++.++..+|+.-. +.+|.+..-.+-+++.++.....+|..++..+|..-..+ +.-+..++.++
T Consensus 87 tqeIa~a~G~la~i~Pe~v~-----~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v-----~rdi~smltsk 156 (253)
T 2db0_A 87 TQEIAKAFGQMAKEKPELVK-----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASI-----VRDFMSMLSSK 156 (253)
T ss_dssp HHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHH-----HHHHHHHTSCS
T ss_pred HHHHHHHHhHHHHhCHHHHH-----hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHH-----HHHHHHHhcCC
Confidence 67788899999987876533 567888888888899999999999999998777655544 45688899999
Q ss_pred CHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHh
Q 005282 248 DASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEM 327 (704)
Q Consensus 248 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 327 (704)
|..-+..|+..++-+..+.... -.-++|.|..+|.+.+.-++..++.+|.+++..++..+. ++..-+.-
T Consensus 157 d~~Dkl~aLnFi~alGen~~~y-----v~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRk------ii~~kl~e 225 (253)
T 2db0_A 157 NREDKLTALNFIEAMGENSFKY-----VNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRK------VVIKRLEE 225 (253)
T ss_dssp SHHHHHHHHHHHHTCCTTTHHH-----HGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHH------HHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhccCccc-----cCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHH------HHHHHHHH
Confidence 9889999999999887654332 235799999999999999999999999999976655433 23444555
Q ss_pred hCCCCHHHHHHHHHHHHHhhc
Q 005282 328 LQSPDSQLKEMSAFALGRLAQ 348 (704)
Q Consensus 328 l~~~~~~v~~~a~~~L~~l~~ 348 (704)
+.+.+..++...-.+|+.+..
T Consensus 226 ~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 226 LNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp CCCSCHHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHH
Confidence 677788888888888888764
No 92
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.71 E-value=1.1e-06 Score=79.01 Aligned_cols=213 Identities=15% Similarity=0.119 Sum_probs=159.7
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHH
Q 005282 235 NALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVH 314 (704)
Q Consensus 235 ~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 314 (704)
+.+..|..+|++.|+.++..++.+|..+...-+.......-..+++.++.++.+.+..+...|+.+|..+..+.+-....
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 35788999999999999999999999998664444444555678999999999999999999999999998766644443
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccC---C
Q 005282 315 IVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADN---E 391 (704)
Q Consensus 315 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~---~ 391 (704)
+ ..+...|..+++++++-++.+++..++.+--....+ +.+..+.+++.|.+..++..+..+|.++++. +
T Consensus 113 y--~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~ 184 (265)
T 3b2a_A 113 F--LKAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADS 184 (265)
T ss_dssp H--HHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSC
T ss_pred H--HHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCH
Confidence 3 235788999999999999999999999993222111 2345678888999999999999999999862 2
Q ss_pred chhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCccceee
Q 005282 392 DNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIF 471 (704)
Q Consensus 392 ~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l 471 (704)
+.... ++.-+-.++.+.|+.++..|..++-.+.+.+-.
T Consensus 185 ~i~~~--------------------------------------I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~---- 222 (265)
T 3b2a_A 185 GHLTL--------------------------------------ILDEIPSLLQNDNEFIVELALDVLEKALSFPLL---- 222 (265)
T ss_dssp CCGGG--------------------------------------TTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCC----
T ss_pred HHHHH--------------------------------------HHHHHHHHHcCCCHHHHHHHHHHHHHHHcCccc----
Confidence 32322 223466788999999999999999999766432
Q ss_pred ecCCcHHHHHHHHh--------hcchhhhhhHHHHH
Q 005282 472 IDNNGLELLLGLLE--------STSVKQREESSVAL 499 (704)
Q Consensus 472 ~~~~~i~~L~~ll~--------~~~~~~~~~a~~~L 499 (704)
.+.++.+..++. .+.|.++..|..+-
T Consensus 223 --~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v~ 256 (265)
T 3b2a_A 223 --ENVKIELLKISRIVDGLVYREGAPIIRLKAKKVS 256 (265)
T ss_dssp --SCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHHHH
T ss_pred --HhHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Confidence 334444443332 35666776665443
No 93
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.66 E-value=5.2e-06 Score=84.33 Aligned_cols=343 Identities=13% Similarity=0.149 Sum_probs=210.6
Q ss_pred CCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcCh---hhhhhhhccCCc-HHHHH-HhcCCCHHHHHHHHHHH
Q 005282 143 GALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENA---NIKTRVRVEDGI-PPLVE-LLKFVDVKVQRAAAGAL 217 (704)
Q Consensus 143 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~~~i-~~L~~-ll~~~~~~~~~~a~~~L 217 (704)
.++..++++|+.... .+++++.+..+..+...++ .....+...... ..+.. ++..+++-.+..+..++
T Consensus 77 ~~~~~~l~lL~~~~~-------~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~ 149 (480)
T 1ho8_A 77 KTLIPLIHLLSTSDN-------EDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVV 149 (480)
T ss_dssp TTHHHHHHHHHSCCC-------HHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhcCh-------HHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHH
Confidence 466788898887554 3899999999999987665 333333333222 22332 33445566667777776
Q ss_pred HHhccCCchhhHHhHhcCChH--HHHHhhcC-CCHHHHHHHHHHHHHHhcCChhhHHHHHHcC--CHHHHHHHhcC----
Q 005282 218 RTLAFKNDENKKLIVECNALP--TLVLMLRS-EDASVHFEAVGVIGNLVHSSPSIKKEVILAG--ALQPVIGLLSS---- 288 (704)
Q Consensus 218 ~~l~~~~~~~~~~~~~~~~i~--~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~--~l~~L~~ll~~---- 288 (704)
..++...+...+.+ ...+. .+...|.. ++...+..++.+|..+... +..+..+.+.+ .++.++.++..
T Consensus 150 ~ll~~~~~~~~~~l--~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~ 226 (480)
T 1ho8_A 150 SLLVQNGLHNVKLV--EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDS 226 (480)
T ss_dssp HHHTSTTTCCHHHH--HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-
T ss_pred HHHhccCCccHhHH--HHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhcc
Confidence 77653222211111 01122 34455554 3445566788899888866 67777776543 35666554431
Q ss_pred C-------------ChhHHHHHHHHHHHHhccCCcchHHHHhcCCh--HHHHHhhCC-CCHHHHHHHHHHHHHhhcCCc-
Q 005282 289 S-------------CSESKREAALLLGQFAAADSNSKVHIVQRGAV--RPLIEMLQS-PDSQLKEMSAFALGRLAQDTH- 351 (704)
Q Consensus 289 ~-------------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i--~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~- 351 (704)
. ...++.+++.+++-++. +++....+...++. ..|+.+++. ...++.+.+..+|.|+.....
T Consensus 227 ~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF-~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~ 305 (480)
T 1ho8_A 227 QLATRIVATNSNHLGIQLQYHSLLLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVK 305 (480)
T ss_dssp ------------CCHHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSST
T ss_pred ccccccccccCCCccHHHHHHHHHHHHHHHc-CHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccch
Confidence 1 23457888889998875 44455555555543 566676764 668899999999999997652
Q ss_pred hh----hhHHhhCChHHHHHhhcC---CChhHHHHHHHH-------HHHcccCCchhhHHHhhCCcccccccccccccch
Q 005282 352 NQ----AGIAQDGGILPLLKLLDS---KNGSLQHNAAFA-------LYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTK 417 (704)
Q Consensus 352 ~~----~~~~~~~~~~~L~~ll~~---~~~~v~~~a~~~-------L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~ 417 (704)
.. ..++-.+...++++.|.. +|+++....-.. ...+++.++...++.. |-+.-- +.+...
T Consensus 306 ~~~~~~~~~~~~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~s-G~L~WS----P~H~se- 379 (480)
T 1ho8_A 306 QHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDS-KLLCWS----PPHVDN- 379 (480)
T ss_dssp THHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHH-TCCCCC----GGGGCH-
T ss_pred hhhhHHHHHHHHccchHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhc-CCcccC----CCccch-
Confidence 11 222222333556666643 566655444332 2333444444444443 443321 111110
Q ss_pred HHHHHHHHHHHHHh---hcchhHHHHHHHhh----------ccHHHHHHHHHHHHhccC-CCccceeeecCCcHHHHHHH
Q 005282 418 DCVARTLKRLEEKV---HGRVLNHLLYLLRV----------ADRAVKRRVTLALAHLCA-PDDCKTIFIDNNGLELLLGL 483 (704)
Q Consensus 418 ~~~~~~~~~~~~~~---~~~~~~~L~~ll~~----------~~~~v~~~a~~~L~~l~~-~~~~~~~l~~~~~i~~L~~l 483 (704)
........++ ...++..|+.++.+ .++.+..-||.-|+.+++ .|..+..+.+.||-..+.++
T Consensus 380 ----~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~L 455 (480)
T 1ho8_A 380 ----GFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMEL 455 (480)
T ss_dssp ----HHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHH
T ss_pred ----hHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHH
Confidence 1112222222 44678889999973 478888999999999976 77788887788999999999
Q ss_pred HhhcchhhhhhHHHHHHHHhhhc
Q 005282 484 LESTSVKQREESSVALYKLATKA 506 (704)
Q Consensus 484 l~~~~~~~~~~a~~~L~~L~~~~ 506 (704)
+.+++++|+..|..++..+..+.
T Consensus 456 m~h~d~~Vr~~AL~avQklm~~~ 478 (480)
T 1ho8_A 456 LNHSDSRVKYEALKATQAIIGYT 478 (480)
T ss_dssp TSCSSHHHHHHHHHHHHHHHHHS
T ss_pred hcCCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999887654
No 94
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=98.61 E-value=1.4e-07 Score=74.91 Aligned_cols=80 Identities=20% Similarity=0.371 Sum_probs=67.6
Q ss_pred cEEEEE-cCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhcCc--------------ccc
Q 005282 537 DVTFVV-EGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGN--------------VDV 601 (704)
Q Consensus 537 d~~~~~-~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~--------------~~~ 601 (704)
-|+++. +|..|.+++.+ +..|.+++.|+.+++ +.....|++++++...++.+++|+|... ..+
T Consensus 5 ~v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~-e~~~~~Iplp~V~~~iL~kVieyc~~h~~~~~~~~~~~~i~~w~v 82 (99)
T 1hv2_A 5 FVTLVSKDDKEYEISRSA-AMISPTLKAMIEGPF-RESKGRIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEFEI 82 (99)
T ss_dssp EEEEEETTTEEEEEEHHH-HTTCHHHHHHHHSST-TTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCCCC
T ss_pred EEEEEecCCCEEEECHHH-HHHhHHHHHHHhccc-ccCCCceecCCcCHHHHHHHHHHHHHhcccCCCccccccCCCccC
Confidence 366666 89999999997 779999999999866 5555789999999999999999998743 135
Q ss_pred ChhhHHHHHHHHhhhCh
Q 005282 602 SVDIAQDLLRAADQYLL 618 (704)
Q Consensus 602 ~~~~~~~ll~~A~~~~~ 618 (704)
+.+.+++|+.+|+|+++
T Consensus 83 d~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 83 PTEMSLELLLAADYLSI 99 (99)
T ss_dssp CHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 67889999999999874
No 95
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.60 E-value=1.5e-06 Score=78.10 Aligned_cols=188 Identities=19% Similarity=0.160 Sum_probs=148.1
Q ss_pred CCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 005282 193 DGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKE 272 (704)
Q Consensus 193 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 272 (704)
+.+..|..++.+.|+.++.+++.+|..+....+..-....-..+++.++.++.+.|..+...|+++|..+..+.|-....
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 34677999999999999999999999998754444444444557999999999999999999999999999876654444
Q ss_pred HHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCch
Q 005282 273 VILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHN 352 (704)
Q Consensus 273 ~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 352 (704)
+.. +...+..++.++++-.+.+++..++.+-..+ .. .+++..+.+++.+.+..++..+..++.+++..+.+
T Consensus 113 y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~-~~------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D 183 (265)
T 3b2a_A 113 FLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLE-DS------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSAD 183 (265)
T ss_dssp HHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSC-CC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSS
T ss_pred HHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCccc-ch------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCC
Confidence 433 4678888999999999999999999883211 11 23578888999999999999999999999976543
Q ss_pred hhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCC
Q 005282 353 QAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNE 391 (704)
Q Consensus 353 ~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 391 (704)
...+ .+.+.-+-.++++.|+.+++.|+.+|..+.+.|
T Consensus 184 ~~i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 184 SGHL--TLILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp CCCG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 3211 234455677889999999999999999998643
No 96
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.59 E-value=6.3e-05 Score=83.56 Aligned_cols=266 Identities=15% Similarity=0.120 Sum_probs=179.2
Q ss_pred hhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHH
Q 005282 62 ETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIV 140 (704)
Q Consensus 62 ~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~ 140 (704)
+++..++.-|+.+|.-+..+... . ++..|.+.|.+.+...+.. -.+.++..|+-.|+-+. ++. .
T Consensus 406 s~~~~ik~GAllaLGli~ag~~~-~------~~~lL~~~L~~~~~~~~~~--~~~~ir~gAaLGLGla~~GS~-~----- 470 (963)
T 4ady_A 406 ASSRFIKGGSLYGLGLIYAGFGR-D------TTDYLKNIIVENSGTSGDE--DVDVLLHGASLGIGLAAMGSA-N----- 470 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTTTTTH-H------HHHHHHHHHHHHSSCCSCH--HHHHHHHHHHHHHHHHSTTCC-C-----
T ss_pred CCcHHHHHHHHHHHHHhcCCCcH-H------HHHHHHHHHcCcccccccc--ccHHHHHHHHHHHHHHhcCCC-C-----
Confidence 34456677788888777664321 1 3677777777654100000 01368888999999986 321 1
Q ss_pred HcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc-CCCHHHHHHHHHHHHH
Q 005282 141 DTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLK-FVDVKVQRAAAGALRT 219 (704)
Q Consensus 141 ~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~ 219 (704)
..++..|...+.+.+. .+++.++.+|+.+..+.... .++..|+..+. ..+..+++.++.+|+.
T Consensus 471 -eev~e~L~~~L~dd~~--------~~~~~AalALGli~vGTgn~-------~ai~~LL~~~~e~~~e~vrR~aalgLGl 534 (963)
T 4ady_A 471 -IEVYEALKEVLYNDSA--------TSGEAAALGMGLCMLGTGKP-------EAIHDMFTYSQETQHGNITRGLAVGLAL 534 (963)
T ss_dssp -HHHHHHHHHHHHTCCH--------HHHHHHHHHHHHHHTTCCCH-------HHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhcCCH--------HHHHHHHHHHhhhhcccCCH-------HHHHHHHHHHhccCcHHHHHHHHHHHHh
Confidence 1235667788876543 56678888888774322211 12445555543 5678899999999999
Q ss_pred hccCCchhhHHhHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHh-cCCChhHHHHH
Q 005282 220 LAFKNDENKKLIVECNALPTLVLMLR-SEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLL-SSSCSESKREA 297 (704)
Q Consensus 220 l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~~~~~a 297 (704)
+..+.++ .++.+++.|. +.++-+|..++.+++.-..+..... .++.|+..+ .+.+..+++.|
T Consensus 535 l~~g~~e---------~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~-------aIq~LL~~~~~d~~d~VRraA 598 (963)
T 4ady_A 535 INYGRQE---------LADDLITKMLASDESLLRYGGAFTIALAYAGTGNNS-------AVKRLLHVAVSDSNDDVRRAA 598 (963)
T ss_dssp HTTTCGG---------GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH-------HHHHHHHHHHHCSCHHHHHHH
T ss_pred hhCCChH---------HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH-------HHHHHHHHhccCCcHHHHHHH
Confidence 8765543 3556666665 6789999999888876554432221 255555554 46677899999
Q ss_pred HHHHHHHhccCCcchHHHHhcCChHHHHHhh-CCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhH
Q 005282 298 ALLLGQFAAADSNSKVHIVQRGAVRPLIEML-QSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSL 376 (704)
Q Consensus 298 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v 376 (704)
+.+|+.+..++++ .++.++..+ .+.++.+|..++.+|+.++.+..... .+..|..+.++.+..|
T Consensus 599 ViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~------aid~L~~L~~D~d~~V 663 (963)
T 4ady_A 599 VIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQS------AIDVLDPLTKDPVDFV 663 (963)
T ss_dssp HHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHH------HHHHHHHHHTCSSHHH
T ss_pred HHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHH------HHHHHHHHccCCCHHH
Confidence 9999998765543 355556544 57899999999999999997765422 4467788889999999
Q ss_pred HHHHHHHHHHccc
Q 005282 377 QHNAAFALYGLAD 389 (704)
Q Consensus 377 ~~~a~~~L~~l~~ 389 (704)
+..|+.+|+.+..
T Consensus 664 rq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 664 RQAAMIALSMILI 676 (963)
T ss_dssp HHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999975
No 97
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.57 E-value=4.2e-05 Score=84.89 Aligned_cols=319 Identities=14% Similarity=0.094 Sum_probs=203.9
Q ss_pred ChHHHHhhccCC-CcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHH
Q 005282 93 AVPALVEHLQTP-PQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRA 171 (704)
Q Consensus 93 ~i~~L~~lL~~~-~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a 171 (704)
++..|-+.|... .. ++.++.-|+.+|+-+..+... .++..|...|.+.+......+.+.++..|
T Consensus 393 gl~~L~~yL~~~~s~--------~~~ik~GAllaLGli~ag~~~-------~~~~lL~~~L~~~~~~~~~~~~~~ir~gA 457 (963)
T 4ady_A 393 GKKVMAPYLPGSRAS--------SRFIKGGSLYGLGLIYAGFGR-------DTTDYLKNIIVENSGTSGDEDVDVLLHGA 457 (963)
T ss_dssp HHHHHTTTSTTSCCS--------CHHHHHHHHHHHHHHTTTTTH-------HHHHHHHHHHHHHSSCCSCHHHHHHHHHH
T ss_pred HHHHHHHhccccCCC--------cHHHHHHHHHHHHHhcCCCcH-------HHHHHHHHHHcCccccccccccHHHHHHH
Confidence 456666666532 11 458999999999999833221 13567788887665111111112678888
Q ss_pred HHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhh-cCCCHH
Q 005282 172 ADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLML-RSEDAS 250 (704)
Q Consensus 172 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~ 250 (704)
+..|+-...++.. ..+++.|..++.+++..++..|..+|+.+-.+.. +.. ++..|++.+ .+.+..
T Consensus 458 aLGLGla~~GS~~-------eev~e~L~~~L~dd~~~~~~~AalALGli~vGTg-n~~------ai~~LL~~~~e~~~e~ 523 (963)
T 4ady_A 458 SLGIGLAAMGSAN-------IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTG-KPE------AIHDMFTYSQETQHGN 523 (963)
T ss_dssp HHHHHHHSTTCCC-------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCC-CHH------HHHHHHHHHHHCSCHH
T ss_pred HHHHHHHhcCCCC-------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccC-CHH------HHHHHHHHHhccCcHH
Confidence 8889887643321 1346678888888887777788888887633211 111 234455543 356889
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhc-CCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhC
Q 005282 251 VHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLS-SSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQ 329 (704)
Q Consensus 251 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~ 329 (704)
+++.++.+|+.+..+.++ .++.++..|. +.++-++..++.+++--..+. .+. ..++.|++.+.
T Consensus 524 vrR~aalgLGll~~g~~e---------~~~~li~~L~~~~dp~vRygaa~alglAyaGT-Gn~------~aIq~LL~~~~ 587 (963)
T 4ady_A 524 ITRGLAVGLALINYGRQE---------LADDLITKMLASDESLLRYGGAFTIALAYAGT-GNN------SAVKRLLHVAV 587 (963)
T ss_dssp HHHHHHHHHHHHTTTCGG---------GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTS-CCH------HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhCCChH---------HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCC-CCH------HHHHHHHHHhc
Confidence 999999999998766554 3556666664 566777888888877544322 222 24666666654
Q ss_pred -CCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHh-hcCCChhHHHHHHHHHHHcccCCchhhHHHhhCCccccc
Q 005282 330 -SPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKL-LDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQ 407 (704)
Q Consensus 330 -~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~ 407 (704)
+.+..+|..|..+|+.+..+.+ ..++.++.+ +++.++.+|..++.+|+.++....+. .
T Consensus 588 ~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~-~----------- 647 (963)
T 4ady_A 588 SDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ-S----------- 647 (963)
T ss_dssp HCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH-H-----------
T ss_pred cCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH-H-----------
Confidence 5678899999999999876653 245666664 46789999999999999997533221 1
Q ss_pred ccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCccceeeecCCcHHHHHHHHhh-
Q 005282 408 DGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLES- 486 (704)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~~- 486 (704)
+++.|..++++.+..|+..|+.+|+.+.....+...-.-.+-++.|.....+
T Consensus 648 ---------------------------aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk 700 (963)
T 4ady_A 648 ---------------------------AIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNK 700 (963)
T ss_dssp ---------------------------HHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCS
T ss_pred ---------------------------HHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcc
Confidence 3445777888999999999999999994432222100001224445555543
Q ss_pred -cchhhhhhHHHHHHHHh
Q 005282 487 -TSVKQREESSVALYKLA 503 (704)
Q Consensus 487 -~~~~~~~~a~~~L~~L~ 503 (704)
.++..+..+..+..-+.
T Consensus 701 ~~d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 701 HQEGLAKFGACVAQGIMN 718 (963)
T ss_dssp SSCHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHh
Confidence 34557777777766653
No 98
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=98.56 E-value=1.3e-07 Score=74.67 Aligned_cols=80 Identities=23% Similarity=0.362 Sum_probs=63.1
Q ss_pred EEEEE-cCeEeehhHHHHhhcCHHHHHhhcC--CCCCCCCCceEcCCCCHHHHHHHHHHHhcCc-----------cccCh
Q 005282 538 VTFVV-EGKQFYAHRICLLASSDAFRAMFDG--GYKEKNAKDVEIPNIRWNVFELMMRFIYTGN-----------VDVSV 603 (704)
Q Consensus 538 ~~~~~-~~~~~~~hk~iL~~~s~~f~~~f~~--~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~-----------~~~~~ 603 (704)
++++. +|..|.+++.+ +..|++++.|+.+ .+.|+....|++++++...++.+++|+|... ..++.
T Consensus 3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~i~~w~vd~ 81 (96)
T 2fnj_C 3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAP 81 (96)
T ss_dssp EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC--------CEEECSSCCHHHHHHHHHHHHHHHHHHSCCSCCCCCCCCT
T ss_pred EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHHccccCCCcccCCCcccCH
Confidence 45555 89999999997 7799999999985 3356666799999999999999999998743 24677
Q ss_pred hhHHHHHHHHhhhCh
Q 005282 604 DIAQDLLRAADQYLL 618 (704)
Q Consensus 604 ~~~~~ll~~A~~~~~ 618 (704)
+.+++|+.+|+|+++
T Consensus 82 ~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 82 EIALELLMAANFLDC 96 (96)
T ss_dssp TTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCc
Confidence 899999999999874
No 99
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.55 E-value=1.3e-05 Score=68.78 Aligned_cols=215 Identities=20% Similarity=0.239 Sum_probs=160.0
Q ss_pred HcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc-CCCHHHHHHHHHHHHH
Q 005282 141 DTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLK-FVDVKVQRAAAGALRT 219 (704)
Q Consensus 141 ~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~ 219 (704)
+...+..++.+|.+. .|.++.+|+..+..++..-++...- .+..|+-+++ +.....-.....+++.
T Consensus 30 d~~~l~~lI~~LDDD--------lwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~ 96 (253)
T 2db0_A 30 DESVLKKLIELLDDD--------LWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQ 96 (253)
T ss_dssp CHHHHHHHHHHTTCS--------CHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccH--------HHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhH
Confidence 344566777777654 3799999999999999877765442 3445666655 6667777778889999
Q ss_pred hccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHH
Q 005282 220 LAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAAL 299 (704)
Q Consensus 220 l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~ 299 (704)
++.-+|+.... .+|.+..-.+-+++.++.....+|..++..+|.... +++.-+..++.+++..-+..|+.
T Consensus 97 la~i~Pe~v~~-----vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLn 166 (253)
T 2db0_A 97 MAKEKPELVKS-----MIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALN 166 (253)
T ss_dssp HHHHCHHHHHH-----HHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHH
T ss_pred HHHhCHHHHHh-----hHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHH
Confidence 98756654442 467788777888999999999999999998887654 34566888898888666766666
Q ss_pred HHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHH
Q 005282 300 LLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHN 379 (704)
Q Consensus 300 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~ 379 (704)
.++.+.. .....+ ...+|.|..+|.+.+.-+|..|..+|.+++...+.-..++ ...+.-+++.+..+++.
T Consensus 167 Fi~alGe---n~~~yv--~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii-----~~kl~e~~D~S~lv~~~ 236 (253)
T 2db0_A 167 FIEAMGE---NSFKYV--NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVV-----IKRLEELNDTSSLVNKT 236 (253)
T ss_dssp HHHTCCT---TTHHHH--GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHH-----HHHHHHCCCSCHHHHHH
T ss_pred HHHHHhc---cCcccc--CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHH-----HHHHHHhcCcHHHHHHH
Confidence 6665532 222222 4679999999999999999999999999998766544333 33455667888889998
Q ss_pred HHHHHHHcc
Q 005282 380 AAFALYGLA 388 (704)
Q Consensus 380 a~~~L~~l~ 388 (704)
+...|..++
T Consensus 237 V~egL~rl~ 245 (253)
T 2db0_A 237 VKEGISRLL 245 (253)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888775
No 100
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=98.53 E-value=5.9e-07 Score=79.29 Aligned_cols=97 Identities=16% Similarity=0.271 Sum_probs=74.8
Q ss_pred cEEEEE-cCeEeehhHHHHhhcCHHHHHhhcCCCC----CCCCCceEcCCCCHHHHHHHHHHHhcCc-------------
Q 005282 537 DVTFVV-EGKQFYAHRICLLASSDAFRAMFDGGYK----EKNAKDVEIPNIRWNVFELMMRFIYTGN------------- 598 (704)
Q Consensus 537 d~~~~~-~~~~~~~hk~iL~~~s~~f~~~f~~~~~----e~~~~~i~l~~~~~~~~~~~l~~~Y~~~------------- 598 (704)
.|.++. +|..|.+++.+ +..|.+++.|+..... +.....|++++++...+..+++|+|...
T Consensus 8 ~i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~~~~~~ 86 (169)
T 3v7d_A 8 NVVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSR 86 (169)
T ss_dssp EEEEECTTCCEEEEEHHH-HTTSHHHHHHHHC-----------CEEECTTCCHHHHHHHHHHHHHTTTCCCCC-------
T ss_pred eEEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHHcccCCCccccccccc
Confidence 455655 78999999998 6689999999985332 2334689999999999999999997643
Q ss_pred ------------cccChhhHHHHHHHHhhhChHhHHHHHHHHHHhhCC
Q 005282 599 ------------VDVSVDIAQDLLRAADQYLLEGLKRLCEYSIAQIIS 634 (704)
Q Consensus 599 ------------~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~ 634 (704)
+.++.+.+++|+.+|+|+++.+|.+.|...+...+.
T Consensus 87 ~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ik 134 (169)
T 3v7d_A 87 KSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIR 134 (169)
T ss_dssp -CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred ccccccHHHHHHHcCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHc
Confidence 134557789999999999999999999888855443
No 101
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.49 E-value=8.3e-07 Score=85.19 Aligned_cols=185 Identities=11% Similarity=0.073 Sum_probs=138.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 005282 196 PPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR-SEDASVHFEAVGVIGNLVHSSPSIKKEVI 274 (704)
Q Consensus 196 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 274 (704)
+.+.+.+.+.++..|..|+..|..++.+.+...... -..+++.|...+. +.+..++..|+.+++.++..-...... .
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~-~ 95 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN-Y 95 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH-H
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH-H
Confidence 458888899999999999999999986533211100 1234777888885 899999999999999998532111111 1
Q ss_pred HcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCc-hh
Q 005282 275 LAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTH-NQ 353 (704)
Q Consensus 275 ~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~ 353 (704)
-..+++.++..+.+.+..++..+..+|..++.... . ..+++.+...+++.++.++..++..|..+..... ..
T Consensus 96 ~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~-----~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 96 ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--L-----EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--H-----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--H-----HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC
Confidence 23478999999999999999999999999975322 1 2357888999999999999999999999765432 21
Q ss_pred -hhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHccc
Q 005282 354 -AGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD 389 (704)
Q Consensus 354 -~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 389 (704)
..-.-...++.++.++.+.++++|..|..++..++.
T Consensus 169 ~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 169 LNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp CCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 111223567889999999999999999999999874
No 102
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.45 E-value=4.2e-06 Score=83.29 Aligned_cols=244 Identities=11% Similarity=0.038 Sum_probs=154.7
Q ss_pred hHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHH
Q 005282 94 VPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAAD 173 (704)
Q Consensus 94 i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~ 173 (704)
...+++++++++. ..+.-..-.+.+++..++-. + =++..+.+=+.++++ -++..|+.
T Consensus 70 f~~v~kl~~s~d~----------~lKrLvYLyl~~~~~~~~e~--i---Lv~Nsl~kDl~~~N~--------~iR~lALR 126 (355)
T 3tjz_B 70 FFAMTKLFQSNDP----------TLRRMCYLTIKEMSCIAEDV--I---IVTSSLTKDMTGKED--------SYRGPAVR 126 (355)
T ss_dssp HHHHHGGGGCCCH----------HHHHHHHHHHHHHTTTSSCG--G---GGHHHHHHHHHSSCH--------HHHHHHHH
T ss_pred HHHHHHHhcCCCH----------HHHHHHHHHHHHhCCCHHHH--H---HHHHHHHhhcCCCcH--------hHHHHHHH
Confidence 5777889999865 88888888888888443221 1 134556666665543 88999999
Q ss_pred HHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHH
Q 005282 174 AITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHF 253 (704)
Q Consensus 174 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~ 253 (704)
+|+++.. ++.- ....+.+.+.+.+.++.++..|+-+...+....|+..+ +++..+-+++.+.++.|+.
T Consensus 127 tL~~I~~--~~m~-----~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~-----~~~~~l~~ll~d~n~~V~~ 194 (355)
T 3tjz_B 127 ALCQITD--STML-----QAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVK-----RWVNEAQEAASSDNIMVQY 194 (355)
T ss_dssp HHHHHCC--TTTH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHTTCSSHHHHH
T ss_pred HHhcCCC--HHHH-----HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHH-----HHHHHHHHHhcCCCccHHH
Confidence 9999974 2221 23456678888899999999999999999876666433 5788899999999999999
Q ss_pred HHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCC---ChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCC
Q 005282 254 EAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSS---CSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQS 330 (704)
Q Consensus 254 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~ 330 (704)
.|+.+|..+...+.. .+..++..+... ++-.+...+..+..++..+++ -.....++.+..++++
T Consensus 195 ~Al~lL~ei~~~d~~---------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~----~~~~~~~~~l~~~L~~ 261 (355)
T 3tjz_B 195 HALGLLYHVRKNDRL---------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDG----SRDSPLFDFIESCLRN 261 (355)
T ss_dssp HHHHHHHHHHTTCHH---------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC---------------------CCCCC
T ss_pred HHHHHHHHHHhhchH---------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccch----hhHHHHHHHHHHHHcC
Confidence 999999999876432 133344444332 233344444444444332211 1224578888888999
Q ss_pred CCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHccc
Q 005282 331 PDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD 389 (704)
Q Consensus 331 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 389 (704)
.++.|.-+|+.++..+...+.. . ...++..+..++.++++++|..|+..|..++.
T Consensus 262 ~~~aVvyEa~k~I~~l~~~~~~---~-~~~a~~~L~~fLss~d~niryvaLr~L~~l~~ 316 (355)
T 3tjz_B 262 KHEMVVYEAASAIVNLPGCSAK---E-LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAM 316 (355)
T ss_dssp SSHHHHHHHHHHHTC---------------CCCTHHHHHHSSSSSSHHHHHHCC-----
T ss_pred CChHHHHHHHHHHHhccCCCHH---H-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 9999999999999998653221 1 12345566777888999999999998888875
No 103
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.42 E-value=2e-07 Score=75.53 Aligned_cols=60 Identities=15% Similarity=0.143 Sum_probs=54.4
Q ss_pred HHhhCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCChhhhccchhcHHHHHHH
Q 005282 629 IAQIISVENIMLMYELSEAYNATTLKQSCILFILEKFDKMRNKPWFFRLIRCVLPEIRNY 688 (704)
Q Consensus 629 l~~~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~L~~~~~~~l~~~ 688 (704)
+.+.++++||+.++.+|+.|++++|.+.|.+||.+||.++.++++|.+||.+.+.+++..
T Consensus 4 ~~~~L~~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF~~v~~~~eFl~L~~~~L~~lL~s 63 (105)
T 2eqx_A 4 GSSGVQVGNCLQVMWLADRHSDPELYTAAKHCAKTHLAQLQNTEEFLHLPHRLLTDIISD 63 (105)
T ss_dssp CCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTCHHHHTSHHHHHSCHHHHHHHHHT
T ss_pred hhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcccHhhCCHHHHHHHHcC
Confidence 345789999999999999999999999999999999999999999999988877766653
No 104
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.39 E-value=1.9e-06 Score=82.62 Aligned_cols=185 Identities=16% Similarity=0.211 Sum_probs=136.4
Q ss_pred HHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc-CCCHHHHHHHHHHHHHhccCCc
Q 005282 147 HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLK-FVDVKVQRAAAGALRTLAFKND 225 (704)
Q Consensus 147 ~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~ 225 (704)
.+.+.+.+. +|..+..++..|..+....+...... ....++.|...+. +.+..++..|+.++..++..-.
T Consensus 19 ~l~~~l~s~--------~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~ 89 (242)
T 2qk2_A 19 DFYDKLEEK--------KWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLA 89 (242)
T ss_dssp THHHHHTCS--------SHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHG
T ss_pred HHHhhhccC--------CHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHh
Confidence 455666543 36999999999999987533321111 1244677888884 8999999999999999995221
Q ss_pred hhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHh
Q 005282 226 ENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFA 305 (704)
Q Consensus 226 ~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~ 305 (704)
..- .-.-..+++.++..+.+.++.+|..+..+|..++...+ . ..+++.+...+.+.++.++..++..|..+.
T Consensus 90 ~~~-~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l 161 (242)
T 2qk2_A 90 KRF-SNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-L------EAQQESIVESLSNKNPSVKSETALFIARAL 161 (242)
T ss_dssp GGG-HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-H------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred hhH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-H------HHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 111 11223468999999999999999999999999986532 1 135778888999999999999999999965
Q ss_pred ccC-Ccc-hHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q 005282 306 AAD-SNS-KVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQD 349 (704)
Q Consensus 306 ~~~-~~~-~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 349 (704)
... +.. ....+ ..+++.|..++.+.++++|..|..+++.++..
T Consensus 162 ~~~~~~~~~~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 162 TRTQPTALNKKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp TTCCGGGCCHHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCccHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 443 221 11222 35789999999999999999999999998854
No 105
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.34 E-value=3.1e-06 Score=81.03 Aligned_cols=191 Identities=7% Similarity=0.017 Sum_probs=138.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHH-hccCCchhhHHhHh-cCChHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCh--hhH-
Q 005282 197 PLVELLKFVDVKVQRAAAGALRT-LAFKNDENKKLIVE-CNALPTLVLML-RSEDASVHFEAVGVIGNLVHSSP--SIK- 270 (704)
Q Consensus 197 ~L~~ll~~~~~~~~~~a~~~L~~-l~~~~~~~~~~~~~-~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~--~~~- 270 (704)
.+.+.+.+.++.-|..|+..|.. ++.+.+.......+ ..++..|.+.+ ++.+..++..|+.+|+.++.+-. ...
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 35667789999999999999999 87543332210001 13477788888 68899999999999999985321 221
Q ss_pred HHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q 005282 271 KEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDT 350 (704)
Q Consensus 271 ~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 350 (704)
.. ...+++.++..+.+....++..+..++..++...+.......-..+++.|...+++.++.++..++.+|..++...
T Consensus 100 ~y--~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 100 DY--VSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp HH--HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred HH--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence 11 1236889999999988999998888888887643221100000135788889999999999999999999998654
Q ss_pred chh-hh--HHh-hCChHHHHHhhcCCChhHHHHHHHHHHHccc
Q 005282 351 HNQ-AG--IAQ-DGGILPLLKLLDSKNGSLQHNAAFALYGLAD 389 (704)
Q Consensus 351 ~~~-~~--~~~-~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 389 (704)
... .. -.- ...++.+.+++.++++++|..|..++..++.
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 421 11 122 5677889999999999999999999999874
No 106
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.29 E-value=1.5e-05 Score=79.34 Aligned_cols=246 Identities=11% Similarity=0.067 Sum_probs=161.7
Q ss_pred CcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 005282 194 GIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEV 273 (704)
Q Consensus 194 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 273 (704)
....+++++.++|..+++-.--.+.+++...++ .+. ++..+.+=++++++-+|-.|+++|+++... +..+
T Consensus 69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e---~iL---v~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~m~~-- 138 (355)
T 3tjz_B 69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAED---VII---VTSSLTKDMTGKEDSYRGPAVRALCQITDS--TMLQ-- 138 (355)
T ss_dssp HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSC---GGG---GHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--TTHH--
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH---HHH---HHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--HHHH--
Confidence 345577889999999999999999998863222 121 367788888999999999999999999743 3333
Q ss_pred HHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchh
Q 005282 274 ILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQ 353 (704)
Q Consensus 274 ~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 353 (704)
...+.+...+.+.++-++..|+.+...+....++. . .++++.+..++.+.++.++.+|..+|..+...+..
T Consensus 139 ---~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~----v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~- 209 (355)
T 3tjz_B 139 ---AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDV----V-KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL- 209 (355)
T ss_dssp ---HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHH----H-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH-
T ss_pred ---HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHH----H-HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH-
Confidence 24566788889999999999999999997654442 2 36899999999999999999999999999875421
Q ss_pred hhHHhhCChHHHHHhhcCC---ChhHHHHHHHHHHHcccCC--chhhHHHhhCCcccccccccccccchHHHHHHHHHHH
Q 005282 354 AGIAQDGGILPLLKLLDSK---NGSLQHNAAFALYGLADNE--DNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLE 428 (704)
Q Consensus 354 ~~~~~~~~~~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~--~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~ 428 (704)
.+..++..+..+ ++..+...+..+..+.... +....
T Consensus 210 -------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~-------------------------------- 250 (355)
T 3tjz_B 210 -------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSP-------------------------------- 250 (355)
T ss_dssp -------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-------------------------------------------
T ss_pred -------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHH--------------------------------
Confidence 233444444332 4555555555555554321 11111
Q ss_pred HHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhcC
Q 005282 429 EKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKAT 507 (704)
Q Consensus 429 ~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~ 507 (704)
+++.+..+++..++.|..+|+.+|..+...+.. . ...++..|..++.++++.+|-.|...|..+....|
T Consensus 251 ------~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~--~--~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P 319 (355)
T 3tjz_B 251 ------LFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK--E--LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHP 319 (355)
T ss_dssp ------------CCCCCSSHHHHHHHHHHHTC---------------CCCTHHHHHHSSSSSSHHHHHHCC--------
T ss_pred ------HHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH--H--HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCc
Confidence 223344556778899999999999998542211 1 12456677888888999999999888888877654
No 107
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.27 E-value=0.00013 Score=74.17 Aligned_cols=261 Identities=15% Similarity=0.190 Sum_probs=160.2
Q ss_pred hHHHHHHHHHHHhhc-CChhhHHHHHHcCCcH--HHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhcc
Q 005282 116 HEVEKECAFALGLLA-VKPEHQQIIVDTGALP--HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVE 192 (704)
Q Consensus 116 ~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~--~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 192 (704)
.-....+..++..++ .++...+.+- ..+. -++..|.+... .+.+..++.+|..+.. .++.|..+...
T Consensus 139 ~~~ll~a~~l~~ll~~~~~~~~~~l~--~l~~~~~~~~~L~~~~~-------~~~~~i~v~~L~~Ll~-~~~~R~~f~~~ 208 (480)
T 1ho8_A 139 QTVLISGFNVVSLLVQNGLHNVKLVE--KLLKNNNLINILQNIEQ-------MDTCYVCIRLLQELAV-IPEYRDVIWLH 208 (480)
T ss_dssp HHHHHHHHHHHHHHTSTTTCCHHHHH--HHHHCHHHHHHHHCTTC-------HHHHHHHHHHHHHHHT-SHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhccCCccHhHHH--HHhhhHHHHHHhccccC-------CchHHHHHHHHHHHhc-chhHHHHHHHc
Confidence 355666666666665 2222111111 1112 35555554221 1445578888888886 67778877765
Q ss_pred CC--cHHHHHHhcC-----------------CCHHHHHHHHHHHHHhccCCchhhHHhHhcCCh--HHHHHhhc-CCCHH
Q 005282 193 DG--IPPLVELLKF-----------------VDVKVQRAAAGALRTLAFKNDENKKLIVECNAL--PTLVLMLR-SEDAS 250 (704)
Q Consensus 193 ~~--i~~L~~ll~~-----------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i--~~L~~lL~-~~~~~ 250 (704)
++ ++.++.+++. ....++..++-++|.++. .++..+.+...++. +.|+..++ +..+.
T Consensus 209 ~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF-~~~~~~~l~~~~i~~~~~L~~i~k~s~KEK 287 (480)
T 1ho8_A 209 EKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITIKEK 287 (480)
T ss_dssp HHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCCSHH
T ss_pred ccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHc-CHHHHHHHHhcchHHHHHHHHHHHhhccch
Confidence 43 6666554431 135678999999999997 66677777666543 56666676 56799
Q ss_pred HHHHHHHHHHHHhcCCh----hhHH-HHHHcCCHHHHHHHhcCC---ChhHHHHHHHHHHHH-------h----------
Q 005282 251 VHFEAVGVIGNLVHSSP----SIKK-EVILAGALQPVIGLLSSS---CSESKREAALLLGQF-------A---------- 305 (704)
Q Consensus 251 v~~~a~~~L~~l~~~~~----~~~~-~~~~~~~l~~L~~ll~~~---~~~~~~~a~~~L~~l-------~---------- 305 (704)
+.+.++.+|.|+....+ .... .+...++ ..++..|... |+++....-.....+ +
T Consensus 288 vvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~ 366 (480)
T 1ho8_A 288 VSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELD 366 (480)
T ss_dssp HHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHh
Confidence 99999999999997652 1112 2333344 4455556432 444433222211111 1
Q ss_pred ----ccCCcch---------HHHHh--cCChHHHHHhhCC----------CCHHHHHHHHHHHHHhhcCC-chhhhHHhh
Q 005282 306 ----AADSNSK---------VHIVQ--RGAVRPLIEMLQS----------PDSQLKEMSAFALGRLAQDT-HNQAGIAQD 359 (704)
Q Consensus 306 ----~~~~~~~---------~~~~~--~~~i~~L~~ll~~----------~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~ 359 (704)
.-++..+ ..+.+ ..++..|+++|.+ .++.+...||.=|+.++.+. .++..+-+.
T Consensus 367 sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~l 446 (480)
T 1ho8_A 367 SKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKT 446 (480)
T ss_dssp HTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHH
T ss_pred cCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHc
Confidence 0011111 11112 2457889999973 36888899999999999764 455555556
Q ss_pred CChHHHHHhhcCCChhHHHHHHHHHHHcc
Q 005282 360 GGILPLLKLLDSKNGSLQHNAAFALYGLA 388 (704)
Q Consensus 360 ~~~~~L~~ll~~~~~~v~~~a~~~L~~l~ 388 (704)
|+-..+++++.+.|++|+.+|+.++..+.
T Consensus 447 g~K~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 447 GGKADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp SHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 88888999999999999999999998764
No 108
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=98.26 E-value=6.2e-06 Score=66.68 Aligned_cols=95 Identities=17% Similarity=0.247 Sum_probs=76.6
Q ss_pred ccEEEEEcCeEeehhHHHHhhcC-HHHHHhhcCCCC----CCCCCceEcCCCCHHHHHHHHHHHhcCccccChh-hHHHH
Q 005282 536 SDVTFVVEGKQFYAHRICLLASS-DAFRAMFDGGYK----EKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVD-IAQDL 609 (704)
Q Consensus 536 ~d~~~~~~~~~~~~hk~iL~~~s-~~f~~~f~~~~~----e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~-~~~~l 609 (704)
.-|.+-|||+.|...+..|+... .+|.+||.+.+. .....++-+ |-++..|..+|.|+.+|++.++.+ ....+
T Consensus 6 ~~v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fi-DRdp~~F~~IL~~lr~g~l~~p~~~~~~~l 84 (107)
T 3drz_A 6 KWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLVINKDLAEEGV 84 (107)
T ss_dssp CEEEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEE-CSCHHHHHHHHHHHHHSCCCCCTTSCHHHH
T ss_pred CEEEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEe-cCChHHHHHHHHHhCCCeeCCCCCCCHHHH
Confidence 34778899999999999998775 578999986531 112345554 679999999999999999887654 35789
Q ss_pred HHHHhhhChHhHHHHHHHHHHh
Q 005282 610 LRAADQYLLEGLKRLCEYSIAQ 631 (704)
Q Consensus 610 l~~A~~~~~~~l~~~c~~~l~~ 631 (704)
++-|.+|++++|++.|++.|.+
T Consensus 85 ~~Ea~fy~l~~L~~~l~~~i~~ 106 (107)
T 3drz_A 85 LEEAEFYNITSLIKLVKDKIRE 106 (107)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhc
Confidence 9999999999999999988754
No 109
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.24 E-value=1.2e-07 Score=81.17 Aligned_cols=122 Identities=20% Similarity=0.218 Sum_probs=92.7
Q ss_pred ccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhH
Q 005282 191 VEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIK 270 (704)
Q Consensus 191 ~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 270 (704)
....++.+..+|+++++.++..|+++|..+.. + .++.|+.+|.++++.+|..++++|+++.. +
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~--~----------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~--- 72 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGD--E----------AFEPLLESLSNEDWRIRGAAAWIIGNFQD--E--- 72 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSCSS--T----------THHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCc--h----------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H---
Confidence 34667889999999999999999988887642 1 26889999999999999999999998852 1
Q ss_pred HHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 005282 271 KEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRL 346 (704)
Q Consensus 271 ~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 346 (704)
+.++.|+..+.++++.++..|+++|+++.. ...++.|..+++++++.++..|+.+|.++
T Consensus 73 ------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 73 ------RAVEPLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp ------HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred ------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 247888999999999999999999998841 23578899999999999999999998753
No 110
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.21 E-value=1.3e-07 Score=81.00 Aligned_cols=121 Identities=20% Similarity=0.239 Sum_probs=93.7
Q ss_pred cCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchH
Q 005282 234 CNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKV 313 (704)
Q Consensus 234 ~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 313 (704)
...++.+..+|.++++.+|..|+++|+.+... .++.|+.++.++++.++..|+++|+++..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIGNFQD------- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGGGCSCHHHHHHHHHHHGGGCS-------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC-------
Confidence 44678899999999999999999999876421 26889999999999999999999998742
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHc
Q 005282 314 HIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGL 387 (704)
Q Consensus 314 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l 387 (704)
...++.|+..+.++++.++..|+++|+++.. ...++.|..++++.++.++..|+.+|..+
T Consensus 72 ----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 ----ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp ----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 2358899999999999999999999999862 23567899999999999999999998754
No 111
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.19 E-value=3.7e-06 Score=80.44 Aligned_cols=193 Identities=11% Similarity=0.061 Sum_probs=136.1
Q ss_pred HHHHhcCCChhHHHHHHHHHHH-HhccCCcchHHHHh-cCChHHHHHhh-CCCCHHHHHHHHHHHHHhhcCCc-hhhh-H
Q 005282 282 VIGLLSSSCSESKREAALLLGQ-FAAADSNSKVHIVQ-RGAVRPLIEML-QSPDSQLKEMSAFALGRLAQDTH-NQAG-I 356 (704)
Q Consensus 282 L~~ll~~~~~~~~~~a~~~L~~-l~~~~~~~~~~~~~-~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~-~~~~-~ 356 (704)
+...+.+.++..|..|+..|.. ++.+.+.....-.+ ..++..|...+ ++.+..++..|+.+|+.++.+-. .... -
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 4556788999999999999999 87543332100001 13577788888 68899999999999999995433 2221 2
Q ss_pred HhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCC-chhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcch
Q 005282 357 AQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNE-DNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRV 435 (704)
Q Consensus 357 ~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (704)
.....++.++..+.+..+.|+..+..+|..++..- ..... +.++ .+
T Consensus 101 y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~----~~l~-----------------------------~l 147 (249)
T 2qk1_A 101 YVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASS----GRNE-----------------------------DM 147 (249)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTT----CTTH-----------------------------HH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccC----CcHH-----------------------------HH
Confidence 22335788899999999999999999998886411 10000 0011 24
Q ss_pred hHHHHHHHhhccHHHHHHHHHHHHhccCCCcc--ce--eeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhcC
Q 005282 436 LNHLLYLLRVADRAVKRRVTLALAHLCAPDDC--KT--IFIDNNGLELLLGLLESTSVKQREESSVALYKLATKAT 507 (704)
Q Consensus 436 ~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~--~~--~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~ 507 (704)
++.|+..+.++++.++..++.+|..+...... .. ..+....++.|.+++.++++.+|..|..++..+++..+
T Consensus 148 l~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG 223 (249)
T 2qk1_A 148 LKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFG 223 (249)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Confidence 56788888889999999999999999543221 11 11114679999999999999999999999999987653
No 112
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=98.18 E-value=3.6e-06 Score=68.20 Aligned_cols=81 Identities=22% Similarity=0.346 Sum_probs=62.7
Q ss_pred cEEEEE-cCeEeehhHHHHhhcCHHHHHhhcC--CCCCCCCCceEcCCCCHHHHHHHHHHHhcCc-----------cccC
Q 005282 537 DVTFVV-EGKQFYAHRICLLASSDAFRAMFDG--GYKEKNAKDVEIPNIRWNVFELMMRFIYTGN-----------VDVS 602 (704)
Q Consensus 537 d~~~~~-~~~~~~~hk~iL~~~s~~f~~~f~~--~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~-----------~~~~ 602 (704)
-|+++. +|..|.+++.+ +..|..++.|+.+ .+.|.....|++++++...++.+++|+|... ..++
T Consensus 18 ~v~L~SsDG~~F~V~~~~-A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~i~~w~vd 96 (112)
T 1vcb_B 18 YVKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIA 96 (112)
T ss_dssp EEEEECTTSCEEEEEHHH-HHTSHHHHHHSSCC--------CEEECSSCCHHHHHHHHHHHHHHHHHSSCSSCCCCCCCC
T ss_pred EEEEEcCCCCEEEECHHH-HHHhHHHHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHHHhhhccCCcCCCCCcccC
Confidence 466664 78999999995 5699999999985 3446556789999999999999999997643 2467
Q ss_pred hhhHHHHHHHHhhhCh
Q 005282 603 VDIAQDLLRAADQYLL 618 (704)
Q Consensus 603 ~~~~~~ll~~A~~~~~ 618 (704)
.+.+++|+.+|+|+++
T Consensus 97 ~~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 97 PEIALELLMAANFLDC 112 (112)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCc
Confidence 7899999999999874
No 113
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.97 E-value=0.0011 Score=77.07 Aligned_cols=413 Identities=10% Similarity=0.035 Sum_probs=216.3
Q ss_pred HHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHH
Q 005282 47 IRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFAL 126 (704)
Q Consensus 47 ~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L 126 (704)
...+.+.|...++.+.. .+ |-..|..+...| |....|++++.+.+. +..+|..|+..|
T Consensus 4 ~~~l~~~L~~~~spd~~---~r--Ae~~L~~~~~~p---------~~~~~L~~il~~~~~--------~~~vR~~A~i~l 61 (960)
T 1wa5_C 4 LETVAKFLAESVIASTA---KT--SERNLRQLETQD---------GFGLTLLHVIASTNL--------PLSTRLAGALFF 61 (960)
T ss_dssp HHHHHHHHHHTTSGGGH---HH--HHHHHHHHHTST---------THHHHHHHHHHCTTS--------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHH---HH--HHHHHHHhhcCC---------CHHHHHHHHHhcCCC--------CHHHHHHHHHHH
Confidence 34566666665543322 22 555555554333 446778888866544 468999999999
Q ss_pred Hhhc-C-----------ChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCC
Q 005282 127 GLLA-V-----------KPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDG 194 (704)
Q Consensus 127 ~~l~-~-----------~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 194 (704)
.|.. . .++.+..+. ..++..+.+... .++..++.+++.++...-+ ..+ .+.
T Consensus 62 kn~i~~~w~~~~~~~~l~~~~k~~ik-----~~ll~~l~~~~~--------~ir~~l~~~ia~ia~~d~p-~~W---p~l 124 (960)
T 1wa5_C 62 KNFIKRKWVDENGNHLLPANNVELIK-----KEIVPLMISLPN--------NLQVQIGEAISSIADSDFP-DRW---PTL 124 (960)
T ss_dssp HHHHHHHSBCSSSCBSSCHHHHHHHH-----HHHHHHHHHSCH--------HHHHHHHHHHHHHHHHHST-TTC---TTH
T ss_pred HHHHHhcCCCcccCCCCCHHHHHHHH-----HHHHHHHHhCCH--------HHHHHHHHHHHHHHHhhCc-cch---hHH
Confidence 9987 2 112222222 234455544332 8899999999999853211 111 467
Q ss_pred cHHHHHHhcCCCHHHHHHHHHHHHHhccCCc------hhhHHhH--hcCChHHHHH-------hhcCCCH---------H
Q 005282 195 IPPLVELLKFVDVKVQRAAAGALRTLAFKND------ENKKLIV--ECNALPTLVL-------MLRSEDA---------S 250 (704)
Q Consensus 195 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~------~~~~~~~--~~~~i~~L~~-------lL~~~~~---------~ 250 (704)
++.|++.++++++..+..++.++..++.... +.+..+. -....+.++. .+++... .
T Consensus 125 l~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~ 204 (960)
T 1wa5_C 125 LSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFD 204 (960)
T ss_dssp HHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 8889999988888889999999999986221 1111110 1112333333 2443321 2
Q ss_pred HHHHHHHHHHHHhcC-ChhhHHHHHHcCCHHHHHHHhcCC------C---------hhHHHHHHHHHHHHhccCCcchHH
Q 005282 251 VHFEAVGVIGNLVHS-SPSIKKEVILAGALQPVIGLLSSS------C---------SESKREAALLLGQFAAADSNSKVH 314 (704)
Q Consensus 251 v~~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~ll~~~------~---------~~~~~~a~~~L~~l~~~~~~~~~~ 314 (704)
+...++.+++++... .+....... ...++.+..++... + ..++..++.++..+.....+....
T Consensus 205 ~~~~~~k~~~~l~~~~~~~~~~~~~-~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~ 283 (960)
T 1wa5_C 205 VLLVLIKLYYDFNCQDIPEFFEDNI-QVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGP 283 (960)
T ss_dssp HHHHHHHHHHHHHSSCCCHHHHHTH-HHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHhhccchHHHHHHH-HHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334466677666532 122111000 12334555555321 1 134667777777776443332211
Q ss_pred HHhcCChHHHHHhhC-----CCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHH-----Hhhc--------------
Q 005282 315 IVQRGAVRPLIEMLQ-----SPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLL-----KLLD-------------- 370 (704)
Q Consensus 315 ~~~~~~i~~L~~ll~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~-----~ll~-------------- 370 (704)
. -..+++..+..+. ..+..++..++..+..++.....+..+...+.+..++ ..+.
T Consensus 284 ~-~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~ 362 (960)
T 1wa5_C 284 M-INEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPI 362 (960)
T ss_dssp H-HHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHH
T ss_pred H-HHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHH
Confidence 1 1234555555553 3456788889999988876543322211112222222 2221
Q ss_pred ---------CCChhHHHHHHHHHHHcccCCc--hhhHHHhhCCcccccc----cccccccchHHHHHHHHHHHHHh----
Q 005282 371 ---------SKNGSLQHNAAFALYGLADNED--NVADLVRVGGVQKLQD----GEFTVQPTKDCVARTLKRLEEKV---- 431 (704)
Q Consensus 371 ---------~~~~~v~~~a~~~L~~l~~~~~--~~~~l~~~g~i~~l~~----~~~~~~~~~~~~~~~~~~~~~~~---- 431 (704)
+.....|..|..+|..++..-. ....+... ..+.+.+ ..... ..++.....+.......
T Consensus 363 e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v~~~~l~~-i~~~l~~~~~~~~~~w-~~reaal~algaia~~~~~~~ 440 (960)
T 1wa5_C 363 EYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAH-MKGFVDQYMSDPSKNW-KFKDLYIYLFTALAINGNITN 440 (960)
T ss_dssp HHHHHHHHC----CHHHHHHHHHHHHHHHCHHHHHHHHHHH-HHHHHHHHHC----CH-HHHHHHHHHHHHHHBSSCCBT
T ss_pred HHHHhccCcccccCcHHHHHHHHHHHHHHcchhHHHHHHHH-HHHHHHHhccCcchhH-HHHHHHHHHHHHHHHHhcccc
Confidence 1112467788888888875322 11111110 0000000 00000 11122222222222110
Q ss_pred ---hc-----chhH----HHHHHHhhc---cHHHHHHHHHHHHhccCCCccceeeecCCcHHHHHHHHhhcchhhhhhHH
Q 005282 432 ---HG-----RVLN----HLLYLLRVA---DRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESS 496 (704)
Q Consensus 432 ---~~-----~~~~----~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~ 496 (704)
.. .+.+ .++..+.+. ++.+|..|+|+|+.++..-. ... -...++.+++.+.++++.|+..|+
T Consensus 441 ~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~-~~~--l~~~l~~l~~~L~d~~~~V~~~A~ 517 (960)
T 1wa5_C 441 AGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT-KAQ--LIELMPILATFLQTDEYVVYTYAA 517 (960)
T ss_dssp TBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC-HHH--HHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred CCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC-HHH--HHHHHHHHHHHhCCCChhHHHHHH
Confidence 00 2222 344445666 89999999999999976431 111 124567777777778899999999
Q ss_pred HHHHHHhhh
Q 005282 497 VALYKLATK 505 (704)
Q Consensus 497 ~~L~~L~~~ 505 (704)
.+|.+++..
T Consensus 518 ~Al~~~~~~ 526 (960)
T 1wa5_C 518 ITIEKILTI 526 (960)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHhc
Confidence 999999874
No 114
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.91 E-value=0.00018 Score=69.42 Aligned_cols=177 Identities=17% Similarity=0.137 Sum_probs=129.3
Q ss_pred HHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHh-hcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHH
Q 005282 95 PALVEHLQTPPQLTNAQIPYEHEVEKECAFALGL-LAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAAD 173 (704)
Q Consensus 95 ~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~-l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~ 173 (704)
..+++-|.+.+. ..+..++.-|.. +..++++...++..+|+..|+......+. ..+.+++.
T Consensus 121 ~~iiekL~~~~~----------~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~g--------N~q~Y~L~ 182 (339)
T 3dad_A 121 NAILEKLYSSSG----------PELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADH--------NYQSYILR 182 (339)
T ss_dssp HHHHHHHHHCCH----------HHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCH--------HHHHHHHH
T ss_pred HHHHHHHhcCCc----------HHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcCh--------HHHHHHHH
Confidence 344555555544 678899999999 44899999999999999999999988754 89999999
Q ss_pred HHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhc----------CChHHHHHh
Q 005282 174 AITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVEC----------NALPTLVLM 243 (704)
Q Consensus 174 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~----------~~i~~L~~l 243 (704)
+|.++.......-..+.....|..+..++.+.+..+.+.|+..|..++..++.+...+.+. .-++.|+.+
T Consensus 183 AL~~LM~~v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~ 262 (339)
T 3dad_A 183 ALGQLMLFVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSI 262 (339)
T ss_dssp HHHHHTTSHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHH
T ss_pred HHHHHHhccccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHH
Confidence 9999986433322333355678889999999999999999999999987666555544332 137889999
Q ss_pred hc---CCCHHHHHHHHHHHHHHhcCChhh--HHH----HHHcCCHHHHHHHhcCC
Q 005282 244 LR---SEDASVHFEAVGVIGNLVHSSPSI--KKE----VILAGALQPVIGLLSSS 289 (704)
Q Consensus 244 L~---~~~~~v~~~a~~~L~~l~~~~~~~--~~~----~~~~~~l~~L~~ll~~~ 289 (704)
|+ +.|.+++..+...|..+....+.. ... +-..|.-..+...+...
T Consensus 263 L~~~~~~D~elq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~ 317 (339)
T 3dad_A 263 LEEKNGADPELLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTA 317 (339)
T ss_dssp HTTTTSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCT
T ss_pred HhccCCCCHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhcc
Confidence 97 789999999998887776543321 222 22334434555656544
No 115
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.84 E-value=0.00056 Score=66.03 Aligned_cols=183 Identities=16% Similarity=0.127 Sum_probs=131.4
Q ss_pred HHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCch
Q 005282 147 HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDE 226 (704)
Q Consensus 147 ~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 226 (704)
.++..|.+.+. .-++.++.-|..+...+......++..+|+..|+......+...+..++.++.++-. ...
T Consensus 122 ~iiekL~~~~~--------~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~-~v~ 192 (339)
T 3dad_A 122 AILEKLYSSSG--------PELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLML-FVD 192 (339)
T ss_dssp HHHHHHHHCCH--------HHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTT-SHH
T ss_pred HHHHHHhcCCc--------HHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHh-ccc
Confidence 44555665443 678888999998655677888889999999999999999999999999999999985 444
Q ss_pred hhHHhH-hcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHc----------CCHHHHHHHhc---CCChh
Q 005282 227 NKKLIV-ECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILA----------GALQPVIGLLS---SSCSE 292 (704)
Q Consensus 227 ~~~~~~-~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~----------~~l~~L~~ll~---~~~~~ 292 (704)
.-.-++ ....+..+..++.+.+..|.+.|+.+|..++..++.....+.++ .-+..++.+|. +.+.+
T Consensus 193 Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~e 272 (339)
T 3dad_A 193 GMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPE 272 (339)
T ss_dssp HHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHH
T ss_pred cccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHH
Confidence 443333 55678999999999999999999999999997765444333321 13788999997 67888
Q ss_pred HHHHHHHHHHHHhccCCcc--hHH----HHhcCChHHHHHhhCCC--CHHHHHH
Q 005282 293 SKREAALLLGQFAAADSNS--KVH----IVQRGAVRPLIEMLQSP--DSQLKEM 338 (704)
Q Consensus 293 ~~~~a~~~L~~l~~~~~~~--~~~----~~~~~~i~~L~~ll~~~--~~~v~~~ 338 (704)
++..|...|-.+...-++. ... +-+.|+-..+.+.++.. ++++++.
T Consensus 273 lq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 273 LLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 8888887776665443322 122 22234445566656653 5555443
No 116
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.78 E-value=0.0031 Score=73.34 Aligned_cols=384 Identities=10% Similarity=0.074 Sum_probs=198.9
Q ss_pred HHHHHHHHHHHHHhhcC--hhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcC-Ch------hh
Q 005282 65 RAAAKTASHALVEFAKN--EEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAV-KP------EH 135 (704)
Q Consensus 65 ~~~~~~a~~~L~~l~~~--~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~-~~------~~ 135 (704)
..++.+.+.++..++.. |.. -.+.++.|++.+++++. ..+..++.+|..++. .. +.
T Consensus 99 ~~ir~~l~~~ia~ia~~d~p~~-----Wp~ll~~L~~~l~s~~~----------~~~~~aL~~l~~i~~~~~~~~~~~~~ 163 (960)
T 1wa5_C 99 NNLQVQIGEAISSIADSDFPDR-----WPTLLSDLASRLSNDDM----------VTNKGVLTVAHSIFKRWRPLFRSDEL 163 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTT-----CTTHHHHHHTTCCSSCT----------THHHHHHHHHHHHHGGGTTSCCCHHH
T ss_pred HHHHHHHHHHHHHHHHhhCccc-----hhHHHHHHHHHhCCCCH----------HHHHHHHHHHHHHHHHHHHhhcChHH
Confidence 45667777777777652 211 24568999999987654 688889999999983 21 22
Q ss_pred HHHHH--HcCCcHHHHHHHhhc----cCCCCC----cchhHHHHHHHHHHHHhhh-cChhhhhhhhccCCcHHHHHHhcC
Q 005282 136 QQIIV--DTGALPHLVSLLKQY----KNGGNS----RALSGVIRRAADAITNLAH-ENANIKTRVRVEDGIPPLVELLKF 204 (704)
Q Consensus 136 ~~~~~--~~g~l~~L~~lL~~~----~~~~~~----~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~~L~~ll~~ 204 (704)
+..+. -....+.+++++... ...... ....+++..++.+++++.. +.+..-.. .-...++.+..++..
T Consensus 164 ~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~-~~~~~~~~~~~~l~~ 242 (960)
T 1wa5_C 164 FLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFED-NIQVGMGIFHKYLSY 242 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH-THHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHH-HHHHHHHHHHHHHcC
Confidence 22111 112345555544321 110000 0001334446666666542 12211000 001223455555542
Q ss_pred C------C---------HHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc-----CCCHHHHHHHHHHHHHHhc
Q 005282 205 V------D---------VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR-----SEDASVHFEAVGVIGNLVH 264 (704)
Q Consensus 205 ~------~---------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-----~~~~~v~~~a~~~L~~l~~ 264 (704)
. + ..++..++.++..+....++.-.. .-..+++..+..+. ..++.++..++..+..++.
T Consensus 243 ~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~ 321 (960)
T 1wa5_C 243 SNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGP-MINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTR 321 (960)
T ss_dssp CSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHH-HHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHT
T ss_pred CCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhC
Confidence 1 1 246778888888877533321111 11234555566554 3467889999999988875
Q ss_pred CChhhHHHHHHcCCHHHHH-----HHhc-----------------------CCChhHHHHHHHHHHHHhccCCcchHHHH
Q 005282 265 SSPSIKKEVILAGALQPVI-----GLLS-----------------------SSCSESKREAALLLGQFAAADSNSKVHIV 316 (704)
Q Consensus 265 ~~~~~~~~~~~~~~l~~L~-----~ll~-----------------------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 316 (704)
. +.....+...+.++.++ ..+. +.....+..|..+|..++...++ .+.
T Consensus 322 ~-~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~---~v~ 397 (960)
T 1wa5_C 322 I-PKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEV---LVT 397 (960)
T ss_dssp S-HHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHH---HHH
T ss_pred c-HhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcch---hHH
Confidence 4 22111110012222222 2221 00113466677777777754321 111
Q ss_pred hcCChHHHHHhhC------CCCHHHHHHHHHHHHHhhcCCchhhhHHhh-----CChH----HHHHhhcCC---ChhHHH
Q 005282 317 QRGAVRPLIEMLQ------SPDSQLKEMSAFALGRLAQDTHNQAGIAQD-----GGIL----PLLKLLDSK---NGSLQH 378 (704)
Q Consensus 317 ~~~~i~~L~~ll~------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-----~~~~----~L~~ll~~~---~~~v~~ 378 (704)
..+++.+...+. +.+...++.|..+++.++.+......-... ...+ .++..+.+. ++-+|.
T Consensus 398 -~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~ 476 (960)
T 1wa5_C 398 -NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRV 476 (960)
T ss_dssp -HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHH
T ss_pred -HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehH
Confidence 113344444444 456788999999999998642211100000 1111 233334555 889999
Q ss_pred HHHHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHH
Q 005282 379 NAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLAL 458 (704)
Q Consensus 379 ~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L 458 (704)
.++++++.++..-. ... ...+++.++..+.+.++.|+..|+++|
T Consensus 477 ~a~~~lg~~~~~~~--~~~----------------------------------l~~~l~~l~~~L~d~~~~V~~~A~~Al 520 (960)
T 1wa5_C 477 DAIKYIYTFRNQLT--KAQ----------------------------------LIELMPILATFLQTDEYVVYTYAAITI 520 (960)
T ss_dssp HHHHHHHHTGGGSC--HHH----------------------------------HHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCC--HHH----------------------------------HHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence 99999999975210 000 112556677777788899999999999
Q ss_pred HhccCCCc---------cceeeec--CCcHHHHHHHHhhcc---h--hhhhhHHHHHHHHhhhc
Q 005282 459 AHLCAPDD---------CKTIFID--NNGLELLLGLLESTS---V--KQREESSVALYKLATKA 506 (704)
Q Consensus 459 ~~l~~~~~---------~~~~l~~--~~~i~~L~~ll~~~~---~--~~~~~a~~~L~~L~~~~ 506 (704)
.+++.... .+..+.. ...++.|..++.... + .....+..+|..++...
T Consensus 521 ~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~ 584 (960)
T 1wa5_C 521 EKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTS 584 (960)
T ss_dssp HHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHH
Confidence 99976321 1222211 134555666665531 1 13456677777765544
No 117
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.67 E-value=0.00031 Score=79.12 Aligned_cols=294 Identities=13% Similarity=0.078 Sum_probs=180.7
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh---hhHHHHHH
Q 005282 199 VELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSP---SIKKEVIL 275 (704)
Q Consensus 199 ~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~---~~~~~~~~ 275 (704)
++-+...+..-+..+...+..+..+.... .....+++..+.+.+.+.... +.|+.++..++.... .....+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~-- 93 (986)
T 2iw3_A 20 FQKLSVATADNRHEIASEVASFLNGNIIE--HDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYI-- 93 (986)
T ss_dssp HHHHTTCCTTTHHHHHHHHHHHHTSSCSS--SSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHH--
T ss_pred HhhccccchhHHHHHHHHHHHHHhccccc--cccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccch--
Confidence 33344333344456667777776432111 111235677777777665444 999999999995432 222222
Q ss_pred cCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCC-CHHHHHHHHHHHHHhhcCCchhh
Q 005282 276 AGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSP-DSQLKEMSAFALGRLAQDTHNQA 354 (704)
Q Consensus 276 ~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~ 354 (704)
.+.++.++....+....++..|..++..+...-+.... ..+++.|+..+.+. ....+..|+.++..++.....+.
T Consensus 94 ~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~ 169 (986)
T 2iw3_A 94 VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQV 169 (986)
T ss_dssp HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHH
Confidence 26789999999888888988888777777654444332 33689999998754 68899999999999997654444
Q ss_pred hHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHH-----HHHHH
Q 005282 355 GIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTL-----KRLEE 429 (704)
Q Consensus 355 ~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~-----~~~~~ 429 (704)
...-...+|.+-..+.+..++|...|..++..++..-.|... ...++.|++....-....+|+-..- +..+.
T Consensus 170 ~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~---~~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~ 246 (986)
T 2iw3_A 170 ALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI---ERFIPSLIQCIADPTEVPETVHLLGATTFVAEVTP 246 (986)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT---GGGHHHHHHHHHCTTHHHHHHHHHTTCCCCSCCCH
T ss_pred HHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch---hhhHHHHHHHhcChhhhHHHHHHhhcCeeEeeecc
Confidence 444456788888999999999999999999988862222110 0111222211111111111111100 00000
Q ss_pred HhhcchhHHHHHHHhhccHHHHHHHHHHHHhccC---CCccceeeecCCcHHHHHHHHhh-cchhhhhhHHHHHHHHhhh
Q 005282 430 KVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCA---PDDCKTIFIDNNGLELLLGLLES-TSVKQREESSVALYKLATK 505 (704)
Q Consensus 430 ~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~---~~~~~~~l~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~L~~~ 505 (704)
-..+-++|.|..-|......+++.++.++-|+|. ++.....|+ ..-+|.|.+.... ++|++|..|..++..|.+-
T Consensus 247 ~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~-~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 247 ATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFL-GKLLPGLKSNFATIADPEAREVTLRALKTLRRV 325 (986)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHH-TTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhh-hhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHh
Confidence 0012244555556666789999999999999976 222222222 2456666666654 8999999999999988654
Q ss_pred c
Q 005282 506 A 506 (704)
Q Consensus 506 ~ 506 (704)
.
T Consensus 326 ~ 326 (986)
T 2iw3_A 326 G 326 (986)
T ss_dssp H
T ss_pred h
Confidence 4
No 118
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.40 E-value=0.032 Score=63.00 Aligned_cols=246 Identities=17% Similarity=0.211 Sum_probs=165.4
Q ss_pred HHHHHHHHHhhcC----hhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc--CChhhHHHHHHc
Q 005282 69 KTASHALVEFAKN----EEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA--VKPEHQQIIVDT 142 (704)
Q Consensus 69 ~~a~~~L~~l~~~----~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~--~~~~~~~~~~~~ 142 (704)
..|+.++..++.. +..--.++ +.++.++..+.+... .|+..|..++..+. -+|+...
T Consensus 70 ~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~dk~~----------~v~~aa~~~~~~~~~~~~~~a~~----- 132 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGNKDK----------EIQSVASETLISIVNAVNPVAIK----- 132 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTCSSH----------HHHHHHHHHHHHHHHHSCGGGHH-----
T ss_pred HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcCCch----------HHHHHHHHHHHHHHHhCCHHHHH-----
Confidence 5566666666631 23322222 578999999888765 89999998998888 4555442
Q ss_pred CCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhcc
Q 005282 143 GALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAF 222 (704)
Q Consensus 143 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 222 (704)
.++|.|+..|.+... |..+..|+.++..++...+. .-...-...+|.+...+-+..+++...|..++..+|.
T Consensus 133 ~~~~~~~~~~~~~~k-------w~~k~~~l~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~ 204 (986)
T 2iw3_A 133 ALLPHLTNAIVETNK-------WQEKIAILAAFSAMVDAAKD-QVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATE 204 (986)
T ss_dssp HHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHSHH-HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHhccccc-------hHHHHHHHHHHHHHHHHhHH-HHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHh
Confidence 346899999976543 89999999999999975543 3334446778888898989999999999999999985
Q ss_pred CCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHH
Q 005282 223 KNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLG 302 (704)
Q Consensus 223 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~ 302 (704)
.-.|+.. ...+|.|++.+.+++. ...++..|+.-+...+.....+ +=.+|.|..-|......+.+.++.++.
T Consensus 205 -~~~n~d~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l--~~~~p~l~r~l~~~~~~~~r~~~~~~~ 276 (986)
T 2iw3_A 205 -TVDNKDI---ERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATL--SIMVPLLSRGLNERETGIKRKSAVIID 276 (986)
T ss_dssp -GCCCTTT---GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHH--HHHHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred -cCCCcch---hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhH--HHHHHHHHhhhccCcchhheeeEEEEc
Confidence 2222221 2358999999987744 3444444444333221111111 113566677777888889999999999
Q ss_pred HHhccCCcc-hHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhh
Q 005282 303 QFAAADSNS-KVHIVQRGAVRPLIEMLQS-PDSQLKEMSAFALGRLA 347 (704)
Q Consensus 303 ~l~~~~~~~-~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~ 347 (704)
|+|.--++- ...-.-..++|.+-+.... .+|++|+.+..++..|.
T Consensus 277 n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~ 323 (986)
T 2iw3_A 277 NMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLR 323 (986)
T ss_dssp HHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHH
T ss_pred chhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence 998532221 1122224567777776654 78999998888888774
No 119
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.26 E-value=0.016 Score=67.64 Aligned_cols=386 Identities=9% Similarity=0.015 Sum_probs=190.5
Q ss_pred HHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCC-----hh-h---
Q 005282 65 RAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVK-----PE-H--- 135 (704)
Q Consensus 65 ~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~-----~~-~--- 135 (704)
..++.+.+.++..++....- .-.+.++.++..++++..+ .-.++.....++.+|..++.. +. -
T Consensus 99 ~~vr~kl~~~la~i~~~~~p----~Wp~~l~~l~~~~~~~~~~----~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~ 170 (971)
T 2x1g_F 99 KIVLNRLCISLGAYIVHMLG----EWPGAIEEVINTFQNQRMP----NVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVV 170 (971)
T ss_dssp HHHHHHHHHHHHHHHHHTTC----C------HHHHHHHHTC--------CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHccc----cccHHHHHHHHHHhccccc----cCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHH
Confidence 44566666666666552110 1235678888888764110 000125777888888877621 11 1
Q ss_pred -HHHHHHcCCcHHHHHHH----hhccCCCCCcchhHHHHHHHHHHHHhhh--cChhhhhhhhccCCcHHHHHHhc-----
Q 005282 136 -QQIIVDTGALPHLVSLL----KQYKNGGNSRALSGVIRRAADAITNLAH--ENANIKTRVRVEDGIPPLVELLK----- 203 (704)
Q Consensus 136 -~~~~~~~g~l~~L~~lL----~~~~~~~~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~~~i~~L~~ll~----- 203 (704)
++.+. ..++.++.++ ............+.++..++.++..... .-+.. .....++.+.. +.
T Consensus 171 ~~~~l~--~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~----~~~~ll~~l~~-L~~~~~~ 243 (971)
T 2x1g_F 171 LRAEIA--KRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE----GCVTITAVLLE-VVHKCYW 243 (971)
T ss_dssp HHHHHH--TTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG----GHHHHHHHHHH-HHHHHHS
T ss_pred HHHHHH--HHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc----ccccHHHHHHh-hhhhhcc
Confidence 11222 2344444444 4332211111123678888888877554 22221 22344555555 31
Q ss_pred -----------CCCHHHHHHHHHHHHHhccCCch-hhHHhHhcCChHHHHHh-------hcCCC---HHHHHHHHHHHHH
Q 005282 204 -----------FVDVKVQRAAAGALRTLAFKNDE-NKKLIVECNALPTLVLM-------LRSED---ASVHFEAVGVIGN 261 (704)
Q Consensus 204 -----------~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~l-------L~~~~---~~v~~~a~~~L~~ 261 (704)
.++++++..|+.++..+....+. ....... ..++.++.+ +.+.+ .......++.+..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~ 322 (971)
T 2x1g_F 244 PCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAF-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVS 322 (971)
T ss_dssp SSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHH-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHH
T ss_pred ccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHH-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 14678999999999999863221 1111111 123333332 23344 3777777888777
Q ss_pred HhcCChhhHH-H---------HHHcCCHHHHHHHhcC-----CChhHHHHHHHHHHHHhccC--------CcchHHHHh-
Q 005282 262 LVHSSPSIKK-E---------VILAGALQPVIGLLSS-----SCSESKREAALLLGQFAAAD--------SNSKVHIVQ- 317 (704)
Q Consensus 262 l~~~~~~~~~-~---------~~~~~~l~~L~~ll~~-----~~~~~~~~a~~~L~~l~~~~--------~~~~~~~~~- 317 (704)
+......... . -.-...++.++.+... .+.++...++..+..++... .........
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~ 402 (971)
T 2x1g_F 323 SVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKP 402 (971)
T ss_dssp HHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 7643322111 0 0001344555555433 46778888888877775411 111111111
Q ss_pred --cCChHHHHHhhCCCC---------------HHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcC-----CChh
Q 005282 318 --RGAVRPLIEMLQSPD---------------SQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDS-----KNGS 375 (704)
Q Consensus 318 --~~~i~~L~~ll~~~~---------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~-----~~~~ 375 (704)
..+++.++..+..++ ...|..+..+|..++..-... +. ...++.+-..+.+ .+..
T Consensus 403 ~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~--~l-~~~~~~l~~~l~~~~~~~~~w~ 479 (971)
T 2x1g_F 403 LYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDY--IL-EILAAMLDEAIADLQRHPTHWT 479 (971)
T ss_dssp HHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTH--HH-HHHHHHHHHHHHHHHHCTTCCH
T ss_pred HHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHH--HH-HHHHHHHHHHHHhccCCCCcHH
Confidence 134455555553221 135666777777776543211 11 0111222223322 5677
Q ss_pred HHHHHHHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHH-hhccHHHHHHH
Q 005282 376 LQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLL-RVADRAVKRRV 454 (704)
Q Consensus 376 v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll-~~~~~~v~~~a 454 (704)
.++.++.+++.++....... ...++ .+++.+..+. .+.++.++..+
T Consensus 480 ~~eaal~~l~~iae~~~~~~----~~~l~-----------------------------~l~~~l~~l~~~d~~~~vr~~a 526 (971)
T 2x1g_F 480 KLEACIYSFQSVAEHFGGEE----KRQIP-----------------------------RLMRVLAEIPYEKLNVKLLGTA 526 (971)
T ss_dssp HHHHHHHHHHHTTTC----------CHHH-----------------------------HHHHHHHHSCTTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcChhh----hHHHH-----------------------------HHHHHHHhcCccccCHHHHHHH
Confidence 88999999999975322100 00000 0222111221 13478999999
Q ss_pred HHHHHhccCCCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282 455 TLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKA 506 (704)
Q Consensus 455 ~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 506 (704)
+++++.++..-....... ...++.|+..+ + +.++..|+.++.++++..
T Consensus 527 ~~~l~~~~~~l~~~~~~l-~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~ 574 (971)
T 2x1g_F 527 LETMGSYCNWLMENPAYI-PPAINLLVRGL-N--SSMSAQATLGLKELCRDC 574 (971)
T ss_dssp HHHHHHTHHHHC----CH-HHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCHHHH-HHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHH
Confidence 999999964211111111 24566666666 2 889999999999999765
No 120
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.01 E-value=0.32 Score=56.42 Aligned_cols=334 Identities=12% Similarity=0.083 Sum_probs=174.5
Q ss_pred chHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCC
Q 005282 115 EHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDG 194 (704)
Q Consensus 115 d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 194 (704)
+...++.++++++.++...... ....++.++..+..-..+ .+.++..++++++.++..-.... -.-...
T Consensus 462 ~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~-----~~~vr~~~~~~l~~~~~~l~~~~--~~l~~v 530 (963)
T 2x19_B 462 SWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISIS-----NVQLADTVMFTIGALSEWLADHP--VMINSV 530 (963)
T ss_dssp CHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCC-----SHHHHHHHHHHHHHTHHHHHHCH--HHHTTT
T ss_pred chHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCC-----cHHHHHHHHHHHHHHHHHHHhCH--HHHHHH
Confidence 4578999999999999322110 012344555554332211 23799999999999985322111 223577
Q ss_pred cHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhH--hcCChHHHHHhhcC--CCHHHHHHHHHHHHHHhcCCh-hh
Q 005282 195 IPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIV--ECNALPTLVLMLRS--EDASVHFEAVGVIGNLVHSSP-SI 269 (704)
Q Consensus 195 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~-~~ 269 (704)
++.++..+.+ +.++..|+.++.+++.... ..+. -..++..+..++.. .+...+..+..+++.++...+ +.
T Consensus 531 l~~l~~~l~~--~~V~~~A~~al~~l~~~~~---~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~ 605 (963)
T 2x19_B 531 LPLVLHALGN--PELSVSSVSTLKKICRECK---YDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEE 605 (963)
T ss_dssp HHHHHHHTTC--GGGHHHHHHHHHHHHHHTG---GGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHhCC--chHHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHH
Confidence 8888888854 7899999999999995322 2221 11234444555554 357889999999999886443 22
Q ss_pred HHHHHHcCCHHHHHHHh----cCC-ChhHHH---HHHHHHHHHhccCCc---------------------chHHHHhcCC
Q 005282 270 KKEVILAGALQPVIGLL----SSS-CSESKR---EAALLLGQFAAADSN---------------------SKVHIVQRGA 320 (704)
Q Consensus 270 ~~~~~~~~~l~~L~~ll----~~~-~~~~~~---~a~~~L~~l~~~~~~---------------------~~~~~~~~~~ 320 (704)
..... ..+++.+...+ ... +++.+. ....+|+.+...-.. .........+
T Consensus 606 ~~~~~-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (963)
T 2x19_B 606 ILKNL-HSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQV 684 (963)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHH
Confidence 22221 23344444333 222 344333 333344433321110 0011122345
Q ss_pred hHHHHHhhC--CCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhh----cC-CChhHHHHHHHHHHHccc----
Q 005282 321 VRPLIEMLQ--SPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLL----DS-KNGSLQHNAAFALYGLAD---- 389 (704)
Q Consensus 321 i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll----~~-~~~~v~~~a~~~L~~l~~---- 389 (704)
++.+..++. ..+..+.+.++.++..++..-.... ...++.++..+ .. ..+.+ +.++..+..
T Consensus 685 ~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~----~~~l~~~~~~l~~~~~~~~~~~~----l~l~~~li~~f~~ 756 (963)
T 2x19_B 685 FQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDF----APMVPQLCEMLGRMYSTIPQASA----LDLTRQLVHIFAH 756 (963)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTT----GGGHHHHHHHHHHHHHHSCCHHH----HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccc----cccHHHHHHHHHHHHHcCCccHH----HHHHHHHHHHhCC
Confidence 566666654 3567888999999988764221110 11234433332 21 22222 222332211
Q ss_pred CCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhh---ccHHHHHHHHHHHHhccCCCc
Q 005282 390 NEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRV---ADRAVKRRVTLALAHLCAPDD 466 (704)
Q Consensus 390 ~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~---~~~~v~~~a~~~L~~l~~~~~ 466 (704)
.+.....+ ...+ ..++..++.++.. .+++++......+..+.....
T Consensus 757 ~~~~~~~~-----------------------~~~l--------~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~ 805 (963)
T 2x19_B 757 EPAHFPPI-----------------------EALF--------LLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKP 805 (963)
T ss_dssp CTTTCHHH-----------------------HHHH--------HHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCG
T ss_pred CcchHHHH-----------------------HHHH--------HHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCc
Confidence 11000000 0000 0123333444432 358888888888887743211
Q ss_pred cceeeecCC-----cHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282 467 CKTIFIDNN-----GLELLLGLLESTSVKQREESSVALYKLATKA 506 (704)
Q Consensus 467 ~~~~l~~~~-----~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 506 (704)
.. +.... .++.++..+...++.+...+...+..+....
T Consensus 806 ~~--~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~ 848 (963)
T 2x19_B 806 DL--FLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRC 848 (963)
T ss_dssp GG--GGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGT
T ss_pred HH--HcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcC
Confidence 11 11122 3444555666788888899999999988754
No 121
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=96.99 E-value=0.00098 Score=59.36 Aligned_cols=96 Identities=17% Similarity=0.250 Sum_probs=75.4
Q ss_pred cccEEEEEcCeEeehhHHHHhhcC-HHHHHhhcCCCC----CCCCCceEcCCCCHHHHHHHHHHHhcCccccChhh-HHH
Q 005282 535 LSDVTFVVEGKQFYAHRICLLASS-DAFRAMFDGGYK----EKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVDI-AQD 608 (704)
Q Consensus 535 ~~d~~~~~~~~~~~~hk~iL~~~s-~~f~~~f~~~~~----e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~-~~~ 608 (704)
-.-|.+-|||..|...+..|.... .+|.+||.+... ......+-+ |-++..|..+|.|+-+|.+.++.+. ...
T Consensus 11 ~~~V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFI-DRDP~~F~~ILnyLRtG~L~lP~~~~~~~ 89 (202)
T 3drx_A 11 SKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLVINKDLAEEG 89 (202)
T ss_dssp CCEEEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEE-CSCSTTHHHHHHHHHHSCCCCCTTSCHHH
T ss_pred CCEEEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEe-cCChHHHHHHHHHhcCCccCCCCCCCHHH
Confidence 345778899999999999998654 488899876421 112334544 5689999999999999999876553 478
Q ss_pred HHHHHhhhChHhHHHHHHHHHHh
Q 005282 609 LLRAADQYLLEGLKRLCEYSIAQ 631 (704)
Q Consensus 609 ll~~A~~~~~~~l~~~c~~~l~~ 631 (704)
+++-|++|+++.|.+.|.+.|.+
T Consensus 90 l~eEA~FygL~~Lv~~l~~~i~e 112 (202)
T 3drx_A 90 VLEEAEFYNITSLIKLVKDKIRE 112 (202)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCcHHHHHHHHHHHHH
Confidence 99999999999999999988853
No 122
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.98 E-value=0.028 Score=54.54 Aligned_cols=188 Identities=13% Similarity=0.093 Sum_probs=125.6
Q ss_pred cHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhh--HH-hH-hcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh--
Q 005282 195 IPPLVELLKFVDVKVQRAAAGALRTLAFKNDENK--KL-IV-ECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPS-- 268 (704)
Q Consensus 195 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~--~~-~~-~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-- 268 (704)
+| +-+-|.+.++..|..|+..+..+....+... .. +. -....+.+-..+.+.+..++..++.++..++.....
T Consensus 12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~ 90 (278)
T 4ffb_C 12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSS 90 (278)
T ss_dssp CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence 44 6678889999999999999998875332211 11 11 123466777888899999999999999988753211
Q ss_pred ---hHHHHHHcCCHHHHHHH-hcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHH
Q 005282 269 ---IKKEVILAGALQPVIGL-LSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALG 344 (704)
Q Consensus 269 ---~~~~~~~~~~l~~L~~l-l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 344 (704)
......-..+++.|+.- +.+....++..+..++..++...... . .+++.+...+.+.++.++..++..|.
T Consensus 91 ~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~-----~~~e~l~~~l~~Knpkv~~~~l~~l~ 164 (278)
T 4ffb_C 91 LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-T-----QSVELVIPFFEKKLPKLIAAAANCVY 164 (278)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-H-----HHHHHHGGGGGCSCHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-H-----HHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 11111223456777754 77778888888888887776432221 1 13567778888999999999999998
Q ss_pred HhhcC--Cchh-hhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHccc
Q 005282 345 RLAQD--THNQ-AGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD 389 (704)
Q Consensus 345 ~l~~~--~~~~-~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 389 (704)
.+... .... ....-...++.+..++.+.+++||..|..++..+-.
T Consensus 165 ~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 165 ELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 87643 2111 111112344567788899999999999999988753
No 123
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.92 E-value=0.013 Score=53.91 Aligned_cols=176 Identities=14% Similarity=0.149 Sum_probs=127.9
Q ss_pred HHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc--CChhhHHHHHHcCCc
Q 005282 68 AKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA--VKPEHQQIIVDTGAL 145 (704)
Q Consensus 68 ~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~--~~~~~~~~~~~~g~l 145 (704)
...|+..|..++.+|+.+..++++++.-.|..+|...+. ..+| +.+|..+.++++.+. ++++....+.+.+.+
T Consensus 73 VcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk----~r~f-E~LRLtsLGVIgaLvK~dd~eVi~fLL~tEii 147 (268)
T 2fv2_A 73 VCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSK----TRPF-EYLRLTSLGVIGALVKTDEQEVINFLLTTEII 147 (268)
T ss_dssp HHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCC----SHHH-HHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccC----CCcc-hhhhhhHHHHHHHHhccCcHHHHHHHHhhhHH
Confidence 355666677778899999999999999999999988765 2222 368999999999999 788888899999999
Q ss_pred HHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhc--------cCCcHHHH-HHhcCCCHHHHHHHHHH
Q 005282 146 PHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRV--------EDGIPPLV-ELLKFVDVKVQRAAAGA 216 (704)
Q Consensus 146 ~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--------~~~i~~L~-~ll~~~~~~~~~~a~~~ 216 (704)
|..++.+...+. -.+..|..++..+..++... ..+.. ..++..++ .+.+.+++.+.++.+++
T Consensus 148 plCLrime~Gse--------lSKtvAtfIlqKIL~dd~GL-~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiirc 218 (268)
T 2fv2_A 148 PLCLRIMESGSE--------LSKTVATFILQKILLDDTGL-AYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRC 218 (268)
T ss_dssp HHHHHHHHHSCH--------HHHHHHHHHHHHHHHSHHHH-HHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHH
T ss_pred HHHHHHHhhccH--------HHHHHHHHHHHHHhccchhH-HHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 999999999875 56677777777776533222 21111 11222222 34457899999999999
Q ss_pred HHHhccCCchhhHHhHhc-------CChHHHHHhhcCCCHHHHHHHHHHHHHH
Q 005282 217 LRTLAFKNDENKKLIVEC-------NALPTLVLMLRSEDASVHFEAVGVIGNL 262 (704)
Q Consensus 217 L~~l~~~~~~~~~~~~~~-------~~i~~L~~lL~~~~~~v~~~a~~~L~~l 262 (704)
-..|+. ++..++.+... |.+. .++ .+|+.++++-...+.|+
T Consensus 219 YlRLsd-n~rar~aL~~~LP~~Lrd~tf~---~~l-~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 219 YLRLSD-NPRAREALRQCLPDQLKDTTFA---QVL-KDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp HHHHTT-SHHHHHHHHHHSCGGGTSSTTH---HHH-TSCHHHHHHHHHHHHHS
T ss_pred HHHHhc-CHHHHHHHHHhCcHHhhChHHH---HHH-hcCHHHHHHHHHHHHhc
Confidence 999995 88877776542 2222 222 35788888888777776
No 124
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=96.90 E-value=0.043 Score=64.38 Aligned_cols=184 Identities=14% Similarity=0.127 Sum_probs=102.1
Q ss_pred HHHHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhh
Q 005282 50 QIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLL 129 (704)
Q Consensus 50 l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l 129 (704)
+...|..+.+.+.+ .+.+|-..|.++..+| ++...+..+|.... +..+|..|+..|.+.
T Consensus 18 l~~~l~~~~~p~~~---~r~~Ae~~L~~~~~~p---------~~~~~l~~iL~~s~---------~~~vr~~aa~~Lk~~ 76 (1049)
T 3m1i_C 18 LDQVVSTFYQGSGV---QQKQAQEILTKFQDNP---------DAWQKADQILQFST---------NPQSKFIALSILDKL 76 (1049)
T ss_dssp HHHHHHHHHHCCHH---HHHHHHHHHHHHHHST---------TGGGGHHHHHHHCS---------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChH---HHHHHHHHHHHHHhCc---------hHHHHHHHHHhhCC---------CHHHHHHHHHHHHHH
Confidence 44444444443322 4666777776665444 34666777775543 358999999999998
Q ss_pred c-C-----ChhhHHHHHHcCCcHHHHHHHhhccCCCC-CcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHh
Q 005282 130 A-V-----KPEHQQIIVDTGALPHLVSLLKQYKNGGN-SRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELL 202 (704)
Q Consensus 130 ~-~-----~~~~~~~~~~~g~l~~L~~lL~~~~~~~~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll 202 (704)
. . .++.+..+. ..++..+.+....+. ......++...+.+++.++...-. ..+ .+.++.|+..+
T Consensus 77 i~~~W~~l~~~~~~~ir-----~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p-~~W---p~ll~~L~~~~ 147 (1049)
T 3m1i_C 77 ITRKWKLLPNDHRIGIR-----NFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-QNW---PEFIPELIGSS 147 (1049)
T ss_dssp HHHTGGGSCHHHHHHHH-----HHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT-TTC---TTHHHHHHHHH
T ss_pred HHhhCccCCHHHHHHHH-----HHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc-ccc---hHHHHHHHHHH
Confidence 7 2 223333333 334444443221000 000026788888888888853211 111 45678888888
Q ss_pred cCCCHHHHHHHHHHHHHhccCCc--------hhh-----HHhHhc--CChHHHHHhhc-CCCHHHHHHHHHHHHHHhc
Q 005282 203 KFVDVKVQRAAAGALRTLAFKND--------ENK-----KLIVEC--NALPTLVLMLR-SEDASVHFEAVGVIGNLVH 264 (704)
Q Consensus 203 ~~~~~~~~~~a~~~L~~l~~~~~--------~~~-----~~~~~~--~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~ 264 (704)
+ .++..+..++.+|..++.... ..+ ..+... .+++.+...+. ..++.++..++.++.+...
T Consensus 148 ~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~ 224 (1049)
T 3m1i_C 148 S-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLH 224 (1049)
T ss_dssp T-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred c-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 6 566667777888877763111 001 112221 12333444454 3467889999999987654
No 125
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=96.87 E-value=0.071 Score=61.46 Aligned_cols=303 Identities=13% Similarity=0.099 Sum_probs=161.5
Q ss_pred HHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCc--hhhHHhHhcCChHHHHHh
Q 005282 166 GVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKND--ENKKLIVECNALPTLVLM 243 (704)
Q Consensus 166 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~~i~~L~~l 243 (704)
.++..++.++......-+ -..+...+.++.+..++.. ++++..|+.+|..+..... +.+..++..=.+...+..
T Consensus 208 ~l~~~~L~~l~s~i~wi~--~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~ 283 (980)
T 3ibv_A 208 GTVGLCLQVYAQWVSWIN--INLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSK 283 (980)
T ss_dssp HHHHHHHHHHHHHTTTSC--HHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhhcC--HHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHH
Confidence 788899999999886433 2345567778888888875 7999999999999976332 222222222001111222
Q ss_pred hc--CCCHHHHHHHHHHHHHHhc------CCh-----hhHHHH--HHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcc-
Q 005282 244 LR--SEDASVHFEAVGVIGNLVH------SSP-----SIKKEV--ILAGALQPVIGLLSSSCSESKREAALLLGQFAAA- 307 (704)
Q Consensus 244 L~--~~~~~v~~~a~~~L~~l~~------~~~-----~~~~~~--~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~- 307 (704)
+. ..|.++.+..++.+..+.. ..+ +..... .-.+.++.++.++.+++.++...+...+..+...
T Consensus 284 l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~ 363 (980)
T 3ibv_A 284 SQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSL 363 (980)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHH
T ss_pred HhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHH
Confidence 22 4677776655555544432 111 111111 1136888888999888888877666665554421
Q ss_pred ---CC--cchHHH--HhcCChHHHHHhhCCC------C----------HHHHHHHHHHHHHhhcC-C-chhhhHHhhCCh
Q 005282 308 ---DS--NSKVHI--VQRGAVRPLIEMLQSP------D----------SQLKEMSAFALGRLAQD-T-HNQAGIAQDGGI 362 (704)
Q Consensus 308 ---~~--~~~~~~--~~~~~i~~L~~ll~~~------~----------~~v~~~a~~~L~~l~~~-~-~~~~~~~~~~~~ 362 (704)
.. ...... .-..+++.++.-++.+ + .+.|+... ++...+.. . +...... ...+
T Consensus 364 ~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~-~~~i 441 (980)
T 3ibv_A 364 RKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYM-YSAI 441 (980)
T ss_dssp HHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHH-HHHH
T ss_pred HhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHH-HHHH
Confidence 10 011111 0012344444444321 1 13454444 33333221 1 1111100 0112
Q ss_pred HH-HHHhhc---CCChhHHHHHHHHHHHcccCCch-hhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhH
Q 005282 363 LP-LLKLLD---SKNGSLQHNAAFALYGLADNEDN-VADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLN 437 (704)
Q Consensus 363 ~~-L~~ll~---~~~~~v~~~a~~~L~~l~~~~~~-~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (704)
.. +-+.+. +.++...+.++.+|+.++..-.+ ...+ .+.-+.+ ..+++
T Consensus 442 ~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~--~~~~~~l--------------------------p~l~~ 493 (980)
T 3ibv_A 442 TSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFF--NEVDKSP--------------------------TVLSQ 493 (980)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTB--CSSSCCB--------------------------CHHHH
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhcccccccc--Ccccchh--------------------------HHHHH
Confidence 22 223332 23567888999999998752111 1111 0100111 01334
Q ss_pred HHHHHHh-----hccHHHHHHHHHHHHhccCCCccceeeecCCcHHHHHHHHh------hcchhhhhhHHHHHHHHhhhc
Q 005282 438 HLLYLLR-----VADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLE------STSVKQREESSVALYKLATKA 506 (704)
Q Consensus 438 ~L~~ll~-----~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~------~~~~~~~~~a~~~L~~L~~~~ 506 (704)
.+..++. ..++.++..++++++..+..-.... .-++.++..+- ++++.++.+|+.++.++++..
T Consensus 494 ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~-----~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~ 568 (980)
T 3ibv_A 494 ILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYES-----AAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSI 568 (980)
T ss_dssp HHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCC-----TTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCc-----hhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHh
Confidence 4555554 5789999999999999976533221 33555544443 467789999999999999987
Q ss_pred C
Q 005282 507 T 507 (704)
Q Consensus 507 ~ 507 (704)
.
T Consensus 569 ~ 569 (980)
T 3ibv_A 569 K 569 (980)
T ss_dssp T
T ss_pred h
Confidence 5
No 126
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=96.85 E-value=0.19 Score=58.35 Aligned_cols=95 Identities=14% Similarity=0.127 Sum_probs=65.2
Q ss_pred cCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhh---CCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChH
Q 005282 287 SSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEML---QSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGIL 363 (704)
Q Consensus 287 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll---~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 363 (704)
.+.++..++.++++++.++.+-.... ...++.++..+ .++++.++..++++++.++..-..... .-...++
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~-~l~~vl~ 532 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV-MINSVLP 532 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH-HHTTTHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH-HHHHHHH
Confidence 45677889999999999986543221 12334444433 335788999999999999854221112 2235677
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHccc
Q 005282 364 PLLKLLDSKNGSLQHNAAFALYGLAD 389 (704)
Q Consensus 364 ~L~~ll~~~~~~v~~~a~~~L~~l~~ 389 (704)
.++..+++ +.++..|+.++.+++.
T Consensus 533 ~l~~~l~~--~~V~~~A~~al~~l~~ 556 (963)
T 2x19_B 533 LVLHALGN--PELSVSSVSTLKKICR 556 (963)
T ss_dssp HHHHHTTC--GGGHHHHHHHHHHHHH
T ss_pred HHHHHhCC--chHHHHHHHHHHHHHH
Confidence 78877754 8899999999999974
No 127
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.84 E-value=0.0063 Score=62.32 Aligned_cols=250 Identities=16% Similarity=0.102 Sum_probs=156.8
Q ss_pred ChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChh--hHHHHHHcCCcHHHHHHHhh--ccCCCCCcchhHH
Q 005282 93 AVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPE--HQQIIVDTGALPHLVSLLKQ--YKNGGNSRALSGV 167 (704)
Q Consensus 93 ~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~--~~~~~~~~g~l~~L~~lL~~--~~~~~~~~~~~~~ 167 (704)
..+.|+.-|-++.. ++|.-|+-+|..+. .... .+..-......-.++-++.- ..+-.+....-.+
T Consensus 175 fcE~L~~DLFdp~W----------EiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPV 244 (800)
T 3oc3_A 175 FFEQISDNLLSYEW----------YKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPV 244 (800)
T ss_dssp TTHHHHHHTTCSSH----------HHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHH
T ss_pred HHHHHHHHhcCcch----------hhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeeh
Confidence 45666666777765 99999999999988 2211 11000000222223322221 1111111112389
Q ss_pred HHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCC
Q 005282 168 IRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSE 247 (704)
Q Consensus 168 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~ 247 (704)
|+.|+++|+.+ ..-+.- ..++..++..+..+.++++..++-.|..+.. -.. . -.++++.++..|.+.
T Consensus 245 RETaAQtLGaL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~D---LL~-~--Ld~Vv~aVL~GL~D~ 311 (800)
T 3oc3_A 245 RDAAAYLLSRI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLKE---FVE-D--KDGLCRKLVSLLSSP 311 (800)
T ss_dssp HHHHHHHHHHH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGG---GCC-C--HHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHHH---HHH-H--HHHHHHHHHhhcCCc
Confidence 99999999998 543322 2334444455578889999999999999921 111 1 245678888899999
Q ss_pred CHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCC-h-hHHHHHHHHHHHHhccCCcchHHHHhcCChHHHH
Q 005282 248 DASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSC-S-ESKREAALLLGQFAAADSNSKVHIVQRGAVRPLI 325 (704)
Q Consensus 248 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 325 (704)
+++|+..|+.+|.-++ . +.... .++..++..|.+-+ - .........|+.++....... .....+|.|.
T Consensus 312 DDDVRAVAAetLiPIA-~-p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~---~dp~LVPRL~ 381 (800)
T 3oc3_A 312 DEDIKLLSAELLCHFP-I-TDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELS---IPPERLKDIF 381 (800)
T ss_dssp SHHHHHHHHHHHTTSC-C-SSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCC---CCSGGGGGTG
T ss_pred ccHHHHHHHHHhhhhc-c-hhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccc---cChHHHHHHH
Confidence 9999999999999988 2 22222 24556666665432 1 224455567777776443211 1236889999
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHH-HhhcCCChhHHHHHHHHHH
Q 005282 326 EMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLL-KLLDSKNGSLQHNAAFALY 385 (704)
Q Consensus 326 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~-~ll~~~~~~v~~~a~~~L~ 385 (704)
.++++.-+.||..++.+|..+. ....+..+. +++-+.+++++..+..+-.
T Consensus 382 PFLRHtITSVR~AVL~TL~tfL----------~~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 382 PCFTSPVPEVRTSILNMVKNLS----------EESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp GGGTCSSHHHHHHHHHHTTTCC----------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred hhhcCCcHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 9999999999999999998877 111233333 5567788999888887775
No 128
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.80 E-value=0.0013 Score=61.86 Aligned_cols=179 Identities=20% Similarity=0.170 Sum_probs=109.7
Q ss_pred ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCC
Q 005282 81 NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGN 160 (704)
Q Consensus 81 ~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~ 160 (704)
++..+......=....+..++++++. .||..++..| . .+.|..++.+.+.
T Consensus 63 ~~~VR~~AA~~l~~~~l~~L~~D~~~----------~VR~~aA~~L---~--------------~~~L~~ll~D~d~--- 112 (244)
T 1lrv_A 63 FWERRAIAVRYSPVEALTPLIRDSDE----------VVRRAVAYRL---P--------------REQLSALMFDEDR--- 112 (244)
T ss_dssp SHHHHHHHHTTSCGGGGGGGTTCSSH----------HHHHHHHTTS---C--------------SGGGGGTTTCSCH---
T ss_pred CHHHHHHHHHhCCHHHHHHHccCcCH----------HHHHHHHHHC---C--------------HHHHHHHHcCCCH---
Confidence 35666666554334445555555543 6776666532 1 1344455554443
Q ss_pred CcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHH
Q 005282 161 SRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTL 240 (704)
Q Consensus 161 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 240 (704)
.++..++..+ . .+.+..+++++++.++..+... +. .+.+
T Consensus 113 -----~VR~~aA~~l---~---------------~~~L~~L~~D~d~~VR~~aA~~---l~---------------~~~l 151 (244)
T 1lrv_A 113 -----EVRITVADRL---P---------------LEQLEQMAADRDYLVRAYVVQR---IP---------------PGRL 151 (244)
T ss_dssp -----HHHHHHHHHS---C---------------TGGGGGGTTCSSHHHHHHHHHH---SC---------------GGGG
T ss_pred -----HHHHHHHHhC---C---------------HHHHHHHHcCCCHHHHHHHHHh---cC---------------HHHH
Confidence 7776666632 1 1235556677888888877762 21 1234
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCC
Q 005282 241 VLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGA 320 (704)
Q Consensus 241 ~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 320 (704)
..+++++++.||..++..+ . .+.+..++.++++.++..++..+ .
T Consensus 152 ~~l~~D~d~~VR~~aa~~l---~---------------~~ll~~ll~D~d~~VR~aaa~~l------------------~ 195 (244)
T 1lrv_A 152 FRFMRDEDRQVRKLVAKRL---P---------------EESLGLMTQDPEPEVRRIVASRL------------------R 195 (244)
T ss_dssp GGTTTCSCHHHHHHHHHHS---C---------------GGGGGGSTTCSSHHHHHHHHHHC------------------C
T ss_pred HHHHcCCCHHHHHHHHHcC---C---------------HHHHHHHHcCCCHHHHHHHHHhC------------------C
Confidence 4567788888888887741 1 13444567788888888777642 2
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHH
Q 005282 321 VRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFAL 384 (704)
Q Consensus 321 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L 384 (704)
.+.|..++.+++..|+..++..+. .+.|..+ .+.++.|+..+...|
T Consensus 196 ~~~L~~Ll~D~d~~VR~~aa~~l~-----------------~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 196 GDDLLELLHDPDWTVRLAAVEHAS-----------------LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp GGGGGGGGGCSSHHHHHHHHHHSC-----------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHcCC-----------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence 356777788888889888888753 2445555 888888888887654
No 129
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=96.77 E-value=0.051 Score=52.41 Aligned_cols=208 Identities=14% Similarity=0.169 Sum_probs=154.7
Q ss_pred hhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhh----HHhHh-cCChHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 005282 189 VRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENK----KLIVE-CNALPTLVLMLRSEDASVHFEAVGVIGNLV 263 (704)
Q Consensus 189 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~----~~~~~-~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 263 (704)
+...+.+..|+..|..=+-+.++.+..+..++.......+ +.+.. ..++..|+..- +++++...+...|..+.
T Consensus 74 i~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--e~~diAl~~G~mLReci 151 (341)
T 1upk_A 74 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLRECI 151 (341)
T ss_dssp HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh--ccchhHhHHHHHHHHHH
Confidence 4455778888888888889999999999999976443322 22222 22333333333 35566666777777777
Q ss_pred cCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhc---CChHHHHHhhCCCCHHHHHHHH
Q 005282 264 HSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQR---GAVRPLIEMLQSPDSQLKEMSA 340 (704)
Q Consensus 264 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~---~~i~~L~~ll~~~~~~v~~~a~ 340 (704)
.+ +.....+...+.+-.+...+..++-++...|..++..+...++.....++.. .+....-+++.+++.-++..++
T Consensus 152 r~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSl 230 (341)
T 1upk_A 152 RH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL 230 (341)
T ss_dssp TS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred Hh-HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHH
Confidence 65 6777777777788888999999999999999999988876665555555443 3567788889999999999999
Q ss_pred HHHHHhhcCCchhhhHHh----hCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHHHh
Q 005282 341 FALGRLAQDTHNQAGIAQ----DGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVR 399 (704)
Q Consensus 341 ~~L~~l~~~~~~~~~~~~----~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~ 399 (704)
..|+.+.....+...+.. ..-+..++.+|++.+..+|..|..+..-+..+|..-+.+.+
T Consensus 231 KLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~ 293 (341)
T 1upk_A 231 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILD 293 (341)
T ss_dssp HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHH
T ss_pred HHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHH
Confidence 999999988777655433 34577789999999999999999999999887776555443
No 130
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.76 E-value=0.009 Score=61.19 Aligned_cols=203 Identities=18% Similarity=0.097 Sum_probs=133.4
Q ss_pred hhHHHHHHHHHHHHhhhcChhhhhhhhcc--CCcHHHHHHhc-------CC---CHHHHHHHHHHHHHhccCCchhhHHh
Q 005282 164 LSGVIRRAADAITNLAHENANIKTRVRVE--DGIPPLVELLK-------FV---DVKVQRAAAGALRTLAFKNDENKKLI 231 (704)
Q Consensus 164 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~L~~ll~-------~~---~~~~~~~a~~~L~~l~~~~~~~~~~~ 231 (704)
.|++|.-|+.+|+.+.............. +..-.|+.++. .+ -..||+.++.+|+.+ ..-+..
T Consensus 187 ~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e---- 261 (800)
T 3oc3_A 187 EWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP---- 261 (800)
T ss_dssp SHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS----
T ss_pred chhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCChh----
Confidence 48999999999999885432211111111 22233333332 11 257999999999999 544443
Q ss_pred HhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcc
Q 005282 232 VECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNS 311 (704)
Q Consensus 232 ~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 311 (704)
..++..++..+..+..+++..++-.|..+. +-... -.++++.++..|.+.+.+++..|+.+|..++ .++.
T Consensus 262 --~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~---DLL~~---Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA--~p~~ 331 (800)
T 3oc3_A 262 --NDIIEQLVGFLDSGDWQVQFSGLIALGYLK---EFVED---KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP--ITDS 331 (800)
T ss_dssp --CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG---GGCCC---HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC--CSST
T ss_pred --HHHHHHHHhhcCCCCeeehhhhHHHHHHHH---HHHHH---HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc--chhh
Confidence 344555666667889999999999999982 21111 2456788888899999999999999999887 3332
Q ss_pred hHHHHhcCChHHHHHhhCCCC--HHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcc
Q 005282 312 KVHIVQRGAVRPLIEMLQSPD--SQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLA 388 (704)
Q Consensus 312 ~~~~~~~~~i~~L~~ll~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~ 388 (704)
.. .++..+...|.+.+ ..........|+.|+..+.... .....+|.|...+++.-++||..++.+|..+.
T Consensus 332 l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~--~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 332 LD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELS--IPPERLKDIFPCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp HH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCC--CCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred HH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccc--cChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Confidence 22 23555555554422 1223455677777776553211 11266788889999999999999999998887
No 131
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=96.74 E-value=0.14 Score=59.42 Aligned_cols=217 Identities=12% Similarity=0.102 Sum_probs=120.2
Q ss_pred hHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCc
Q 005282 116 HEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGI 195 (704)
Q Consensus 116 ~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i 195 (704)
...++.|+.+++.++....... ...++.++.++..-... ++.+.++..++++++.++..-..... .-...+
T Consensus 478 w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~---d~~~~vr~~a~~~l~~~~~~l~~~~~--~l~~vl 548 (971)
T 2x1g_F 478 WTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYE---KLNVKLLGTALETMGSYCNWLMENPA--YIPPAI 548 (971)
T ss_dssp CHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTT---TSCHHHHHHHHHHHHHTHHHHC------CHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCcc---ccCHHHHHHHHHHHHHHHHHHhcCHH--HHHHHH
Confidence 3789999999999993322111 13445555554332210 01238999999999999843211111 112345
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhH--hcCChHHHHHhhcC--CCHHHHHHHHHHHHHHhcCCh-hhH
Q 005282 196 PPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIV--ECNALPTLVLMLRS--EDASVHFEAVGVIGNLVHSSP-SIK 270 (704)
Q Consensus 196 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~-~~~ 270 (704)
+.|+..+ + +.++..|+.++.+++.... ..+. -..++..+..++.. .+...+..+..+++.++..-+ +..
T Consensus 549 ~~l~~~l-~--~~v~~~A~~al~~l~~~~~---~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~ 622 (971)
T 2x1g_F 549 NLLVRGL-N--SSMSAQATLGLKELCRDCQ---LQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEI 622 (971)
T ss_dssp HHHHHHH-H--SSCHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHH
T ss_pred HHHHHHh-C--hHHHHHHHHHHHHHHHHHH---HhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHH
Confidence 6666666 2 7799999999999996332 2222 12345566666766 357889999999999886432 211
Q ss_pred HHHHHcCCHHHHHH----HhcCC--ChhHHHHHHHHHHHHh---ccCCc------------chHHHHhcCChHHHHHhhC
Q 005282 271 KEVILAGALQPVIG----LLSSS--CSESKREAALLLGQFA---AADSN------------SKVHIVQRGAVRPLIEMLQ 329 (704)
Q Consensus 271 ~~~~~~~~l~~L~~----ll~~~--~~~~~~~a~~~L~~l~---~~~~~------------~~~~~~~~~~i~~L~~ll~ 329 (704)
.... ...++.++. ++... +.+.+.....++..++ ..-.. ....-....+++.+..++.
T Consensus 623 ~~~~-~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~ 701 (971)
T 2x1g_F 623 PKYL-DIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAE 701 (971)
T ss_dssp HHHH-HHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHH
Confidence 1111 123333333 33332 2323333333333332 21000 0011223467787777775
Q ss_pred C--CCHHHHHHHHHHHHHhhc
Q 005282 330 S--PDSQLKEMSAFALGRLAQ 348 (704)
Q Consensus 330 ~--~~~~v~~~a~~~L~~l~~ 348 (704)
. .+..+.+.++++++.++.
T Consensus 702 ~~~~~~~v~e~~~~~~~~~~~ 722 (971)
T 2x1g_F 702 MWVEEIDVLEAACSAMKHAIT 722 (971)
T ss_dssp HTTTCHHHHHHHHHHHHHHHH
T ss_pred hccccHHHHHHHHHHHHHHHH
Confidence 3 467899999999999775
No 132
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=96.73 E-value=0.024 Score=53.57 Aligned_cols=174 Identities=10% Similarity=0.077 Sum_probs=117.5
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHh----hcCCCHHHHHHHHHHHHHHhcC----Chhh
Q 005282 198 LVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLM----LRSEDASVHFEAVGVIGNLVHS----SPSI 269 (704)
Q Consensus 198 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l----L~~~~~~v~~~a~~~L~~l~~~----~~~~ 269 (704)
+...+-+.|..-+..++..|......+++ .+.. .+..+++. +.+.+..+...++.+|..+... ....
T Consensus 51 ~~~~lfs~d~k~~~~ale~L~~~l~~~~~---~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~ 125 (266)
T 2of3_A 51 LMSQLFHKDFKQHLAALDSLVRLADTSPR---SLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPM 125 (266)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHHHCHH---HHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhhChH---HHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccc
Confidence 55555666777777777777776543322 2221 23334443 3378999999999888887521 1111
Q ss_pred HHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q 005282 270 KKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQD 349 (704)
Q Consensus 270 ~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 349 (704)
.. .-..-++|.|+.-+.++...+|..+-.++..++.-.+. ..+.+.+...+++.+..++..++..+..+...
T Consensus 126 ~~-~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~ 197 (266)
T 2of3_A 126 SQ-EEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDALKSKNARQRSECLLVIEYYITN 197 (266)
T ss_dssp CH-HHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred hH-HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 11 11123689999999888888888877777666532211 23577888888999999999999999998743
Q ss_pred CchhhhHHhhCCh---HHHHHhhcCCChhHHHHHHHHHHHcc
Q 005282 350 THNQAGIAQDGGI---LPLLKLLDSKNGSLQHNAAFALYGLA 388 (704)
Q Consensus 350 ~~~~~~~~~~~~~---~~L~~ll~~~~~~v~~~a~~~L~~l~ 388 (704)
.... ...++ +.+.+++.+.|.+||..|..++..+-
T Consensus 198 ~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 198 AGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp HCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred cCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 2211 23467 88999999999999999999998764
No 133
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=96.53 E-value=0.13 Score=59.54 Aligned_cols=317 Identities=9% Similarity=0.084 Sum_probs=162.0
Q ss_pred HHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHH-hhccCCCcCCCCCCCCchHHHHH
Q 005282 43 LVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALV-EHLQTPPQLTNAQIPYEHEVEKE 121 (704)
Q Consensus 43 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~-~lL~~~~~~~~~~~~~d~~v~~~ 121 (704)
+....+.+++.+..++..... ......++.++.....--.. ..+++.+.++.++ .+|..+ +++..
T Consensus 188 l~~~~~~I~~ll~~iL~~~~~-~~l~~~~L~~l~s~l~WI~i-~~i~~~~ll~~l~~~~L~~~------------~~r~~ 253 (1023)
T 4hat_C 188 MSKEFEQIFKLCFQVLEQGAS-SSLIVATLESLLRYLHWIPY-RYIYETNILELLSTKFMTSP------------DTRAI 253 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTTSCT-HHHHSSSHHHHHHTHHHHSH------------HHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCCH-HHhcchhHHHHHHHHHcCCH------------HHHHH
Confidence 345566777777666643322 23456677888776653222 4456788999999 888543 79999
Q ss_pred HHHHHHhhcC-C---h--hhHHHHHHc--CCcHH-----------HHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcC
Q 005282 122 CAFALGLLAV-K---P--EHQQIIVDT--GALPH-----------LVSLLKQYKNGGNSRALSGVIRRAADAITNLAHEN 182 (704)
Q Consensus 122 a~~~L~~l~~-~---~--~~~~~~~~~--g~l~~-----------L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~ 182 (704)
|+.+|..+.+ . + .....+... +.+.. +...+...+ ..+.+.....+..+..+....
T Consensus 254 A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~-----~~D~e~~~~l~~l~~~~~e~~ 328 (1023)
T 4hat_C 254 TLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANAN-----GNDQSFLQDLAMFLTTYLARN 328 (1023)
T ss_dssp HHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTC-----TTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccc-----cchHHHHHHHHHHHHHHHHHH
Confidence 9999999984 2 2 121111100 11111 111122211 112366666676766665322
Q ss_pred hhhhhhhhcc-C-------CcHHHHHHhcCCCHHHHHHHHHHHHHhccC---CchhhHHhH--hcCChHHHHHhhcCCC-
Q 005282 183 ANIKTRVRVE-D-------GIPPLVELLKFVDVKVQRAAAGALRTLAFK---NDENKKLIV--ECNALPTLVLMLRSED- 248 (704)
Q Consensus 183 ~~~~~~~~~~-~-------~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~---~~~~~~~~~--~~~~i~~L~~lL~~~~- 248 (704)
.. .+... + ++..|+.+-..++.++-..++..=..++.+ .+..+.... -...++.+++-+.-+.
T Consensus 329 ~~---li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e 405 (1023)
T 4hat_C 329 RA---LLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEE 405 (1023)
T ss_dssp GG---GGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTT
T ss_pred HH---HHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 11 11111 1 122344444456777766666543344320 111111110 0123444444443221
Q ss_pred -------------------HH-HH----HHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcC--CChhHHHHHHHHHH
Q 005282 249 -------------------AS-VH----FEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSS--SCSESKREAALLLG 302 (704)
Q Consensus 249 -------------------~~-v~----~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~~~~~a~~~L~ 302 (704)
++ .. +.++..+.++.. +.... -.++.+...+.+ .++..++.++++++
T Consensus 406 ~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~--~~~~~-----~~~~~l~~~l~~~~~~W~~~EA~~~a~g 478 (1023)
T 4hat_C 406 VLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNV--IDTEE-----IMISKLARQIDGSEWSWHNINTLSWAIG 478 (1023)
T ss_dssp CCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCH--HHHHH-----HHHHHHHHHHSSTTCCHHHHHHHHHHHH
T ss_pred cccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCH--HHHHH-----HHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 00 11 122222322221 11111 112333333433 57889999999999
Q ss_pred HHhccCCcchHHHHhcCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHH
Q 005282 303 QFAAADSNSKVHIVQRGAVRPLIEMLQS-----PDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQ 377 (704)
Q Consensus 303 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~ 377 (704)
.++.+..+....-.-..+++.|+.++.+ +...++..++++++..+..-...... -...+..++..+++.++.++
T Consensus 479 aIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~-L~~vl~~L~~~l~~~~~~v~ 557 (1023)
T 4hat_C 479 SISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF-LRTVILKLFEFMHETHEGVQ 557 (1023)
T ss_dssp HTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHH-HHHHHHHHHHHTTCSCHHHH
T ss_pred HHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHH-HHHHHHHHHHHhhcCCHHHH
Confidence 9986443322222223467778887753 22345567889999887543222222 11233445555666788999
Q ss_pred HHHHHHHHHccc
Q 005282 378 HNAAFALYGLAD 389 (704)
Q Consensus 378 ~~a~~~L~~l~~ 389 (704)
..|++++.+++.
T Consensus 558 ~~A~~al~~l~~ 569 (1023)
T 4hat_C 558 DMACDTFIKIVQ 569 (1023)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999985
No 134
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=96.53 E-value=0.17 Score=48.88 Aligned_cols=204 Identities=13% Similarity=0.151 Sum_probs=149.9
Q ss_pred HHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhh----hhhhc-cCCcHHHHHHhcCCCHHHHH
Q 005282 137 QIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIK----TRVRV-EDGIPPLVELLKFVDVKVQR 211 (704)
Q Consensus 137 ~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~----~~~~~-~~~i~~L~~ll~~~~~~~~~ 211 (704)
..+...+.+..|+..|..-+- +.+..+..++.++.......+ ..+.. ..++..|+..- +++++-.
T Consensus 72 ~ei~~~dll~~Li~~l~~L~f--------E~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--e~~diAl 141 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLIDF--------EGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIAL 141 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSCH--------HHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHH
T ss_pred HHHHHhCHHHHHHHhcccCCc--------hhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh--ccchhHh
Confidence 455667788888888887654 888999999988875433221 12221 12222222222 3556677
Q ss_pred HHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcC---CHHHHHHHhcC
Q 005282 212 AAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAG---ALQPVIGLLSS 288 (704)
Q Consensus 212 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---~l~~L~~ll~~ 288 (704)
.+...|+.++. .+.....+...+.+..+.+.+..++=++...|..++..+...+......+...+ +....-.+|.+
T Consensus 142 ~~G~mLRecir-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S 220 (341)
T 1upk_A 142 NCGIMLRECIR-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHS 220 (341)
T ss_dssp HHHHHHHHHHT-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHH-hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcC
Confidence 77788888886 666666677777788888999999999999999999998877676666666543 56777889999
Q ss_pred CChhHHHHHHHHHHHHhccCCcchHHHHh----cCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCch
Q 005282 289 SCSESKREAALLLGQFAAADSNSKVHIVQ----RGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHN 352 (704)
Q Consensus 289 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~----~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 352 (704)
++--+++.++..|+.+.. ++.+...+.. ..-+..++.+|++.+..++-.|....--++.++..
T Consensus 221 ~NYVTkRQSlKLLgelLl-dr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K 287 (341)
T 1upk_A 221 ENYVTKRQSLKLLGELLL-DRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNK 287 (341)
T ss_dssp SSHHHHHHHHHHHHHHHH-SGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSC
T ss_pred CcchhHHHHHHHHHHHHh-CchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCC
Confidence 999999999999999986 5555444433 35688999999999999999999999888877543
No 135
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.47 E-value=0.059 Score=52.16 Aligned_cols=179 Identities=15% Similarity=0.071 Sum_probs=117.3
Q ss_pred hhHHHHHHHHHHHHhhhcChhhh--hh-hh-ccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCch-----hhHHhHhc
Q 005282 164 LSGVIRRAADAITNLAHENANIK--TR-VR-VEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDE-----NKKLIVEC 234 (704)
Q Consensus 164 ~~~~~~~a~~~L~~l~~~~~~~~--~~-~~-~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-----~~~~~~~~ 234 (704)
.|..|..++..|..+....+... .. +. -....+.+...+.+.+..++..++.++..++..... ......-.
T Consensus 22 ~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~ 101 (278)
T 4ffb_C 22 LWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLIS 101 (278)
T ss_dssp SHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHH
Confidence 37999999999988875433211 11 11 123456677888899999999999999988752211 11111223
Q ss_pred CChHHHHH-hhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccC-Cc--
Q 005282 235 NALPTLVL-MLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAAD-SN-- 310 (704)
Q Consensus 235 ~~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~-- 310 (704)
.+++.|+. .+.+..+.++..+..++..++...... . .+++.+...+.+.++.++..++..|..+.... ..
T Consensus 102 ~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~-----~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~ 175 (278)
T 4ffb_C 102 TWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-T-----QSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNV 175 (278)
T ss_dssp HHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-H-----HHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-H-----HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcC
Confidence 35676765 478889999999998888776432111 1 12456667788999999999998888776431 11
Q ss_pred chHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q 005282 311 SKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQD 349 (704)
Q Consensus 311 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 349 (704)
..... -..+++.+..++.+.++.||..|..++..+-..
T Consensus 176 ~~k~~-l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 176 NVQTF-LPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp CHHHH-HHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred CchhH-HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 11111 123566778888999999999999999887653
No 136
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=96.33 E-value=0.17 Score=59.22 Aligned_cols=297 Identities=12% Similarity=0.060 Sum_probs=149.0
Q ss_pred hHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhh-----hhhhh
Q 005282 116 HEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANI-----KTRVR 190 (704)
Q Consensus 116 ~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~-----~~~~~ 190 (704)
.+++..++.++.+....-.. ..+.+...++.+++.+.. + ++++..++.+|..+....... ...+.
T Consensus 209 ~~~~~~aL~~l~~~l~wi~~-~~~~~~~ll~~l~~~~l~-~--------~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~ 278 (1049)
T 3m1i_C 209 SSLIVATLESLLRYLHWIPY-RYIYETNILELLSTKFMT-S--------PDTRAITLKCLTEVSNLKIPQDNDLIKRQTV 278 (1049)
T ss_dssp HHHHHHHHHHHHHHTTTSCT-HHHHSSSHHHHHHTHHHH-S--------HHHHHHHHHHHHHHHHCCCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCH-HHHhhhhHHHHHHHHhCC-C--------HhHHHHHHHHHHHHHhCCCCcchhhHHHHHH
Confidence 47899999999887632111 224445556666633222 2 288999999999988542111 11000
Q ss_pred c--cCCcHHHHH-H-------------hcCCCHHHHHHHHHHHHHhcc-------CCchhhHHhHhcCChHHHHHhhcCC
Q 005282 191 V--EDGIPPLVE-L-------------LKFVDVKVQRAAAGALRTLAF-------KNDENKKLIVECNALPTLVLMLRSE 247 (704)
Q Consensus 191 ~--~~~i~~L~~-l-------------l~~~~~~~~~~a~~~L~~l~~-------~~~~~~~~~~~~~~i~~L~~lL~~~ 247 (704)
. .+.+..+.. + ....+.+.....+..+..+.. ..+.....+ ..+++.++.....+
T Consensus 279 ~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~~~~ 356 (1049)
T 3m1i_C 279 LFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLSKIE 356 (1049)
T ss_dssp HHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHHcCC
Confidence 0 111221111 1 112244444455555544332 111111111 13466666666677
Q ss_pred CHHHHHHHHHHHHHHhc----CC--hhhHHHHHHcCCHHHHHHHhcCC-------------------Ch---hHHHHHHH
Q 005282 248 DASVHFEAVGVIGNLVH----SS--PSIKKEVILAGALQPVIGLLSSS-------------------CS---ESKREAAL 299 (704)
Q Consensus 248 ~~~v~~~a~~~L~~l~~----~~--~~~~~~~~~~~~l~~L~~ll~~~-------------------~~---~~~~~a~~ 299 (704)
+.++...++..+..++. .. ......+. ...++.++..+.-+ +. ..+..+..
T Consensus 357 d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l-~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~ 435 (1049)
T 3m1i_C 357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEIC-SQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSERE 435 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHH-HHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHH-HHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHH
Confidence 88999989888877775 11 11111111 12334444444211 00 11334555
Q ss_pred HHHHHhccCCcchHHHHhcCChHHHHHhhC--CCCHHHHHHHHHHHHHhhcCCchh-hhHHhhCChHHHHHhhcC-----
Q 005282 300 LLGQFAAADSNSKVHIVQRGAVRPLIEMLQ--SPDSQLKEMSAFALGRLAQDTHNQ-AGIAQDGGILPLLKLLDS----- 371 (704)
Q Consensus 300 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~L~~ll~~----- 371 (704)
+|..++...+.... .-+.+.+-..+. ..+...++.++++++.++..-... ..-.-...++.+..+...
T Consensus 436 ~L~~l~~~~~~~~l----~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~ 511 (1049)
T 3m1i_C 436 VLVYLTHLNVIDTE----EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKD 511 (1049)
T ss_dssp HHHHHHHHCHHHHH----HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHH
T ss_pred HHHHHHccCHHHHH----HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhcccc
Confidence 66666532211111 112344444444 356788999999999998653222 111111223333333221
Q ss_pred CChhHHHHHHHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHH
Q 005282 372 KNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVK 451 (704)
Q Consensus 372 ~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~ 451 (704)
..+-++..++++++.++.. +... ......+++.++..+.+.++.++
T Consensus 512 ~~~~v~~~~~~~lgry~~~------~~~~----------------------------~~~l~~vl~~ll~~l~~~~~~V~ 557 (1049)
T 3m1i_C 512 NKAVVASDIMYVVGQYPRF------LKAH----------------------------WNFLRTVILKLFEFMHETHEGVQ 557 (1049)
T ss_dssp HHHHHHHHHHHHHHHCHHH------HHHC----------------------------HHHHHHHHHHHHHHTTSSCHHHH
T ss_pred chHHHHHHHHHHHHHHHHH------HHhH----------------------------HHHHHHHHHHHHHHhcCCCHHHH
Confidence 2233444677888877531 0000 00112255667777778889999
Q ss_pred HHHHHHHHhccC
Q 005282 452 RRVTLALAHLCA 463 (704)
Q Consensus 452 ~~a~~~L~~l~~ 463 (704)
..||.++.+++.
T Consensus 558 ~~A~~al~~l~~ 569 (1049)
T 3m1i_C 558 DMACDTFIKIVQ 569 (1049)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999976
No 137
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=96.30 E-value=0.038 Score=63.78 Aligned_cols=141 Identities=11% Similarity=0.018 Sum_probs=86.9
Q ss_pred hhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcC-----CCHHHHHHHHHHHHHhccCCchhhHHhHhcCChH
Q 005282 164 LSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKF-----VDVKVQRAAAGALRTLAFKNDENKKLIVECNALP 238 (704)
Q Consensus 164 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 238 (704)
+|..++.++++++.++..-.+....-.-..+++.|+.++.. ....++..++++++..+.--..+.+ .. ..++.
T Consensus 466 ~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~-~L-~~vl~ 543 (1023)
T 4hat_C 466 SWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN-FL-RTVIL 543 (1023)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHH-HH-HHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHH-HH-HHHHH
Confidence 58999999999999996433322333445567778887763 2234555677888877641111111 11 12355
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHH------cCCHHHHH----HHhcCCChhHHHHHHHHHHHHhccC
Q 005282 239 TLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVIL------AGALQPVI----GLLSSSCSESKREAALLLGQFAAAD 308 (704)
Q Consensus 239 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~------~~~l~~L~----~ll~~~~~~~~~~a~~~L~~l~~~~ 308 (704)
.|+..+.++++.++..|++++.+++.. +...+.. ...++.++ .....-+......+..+++.+....
T Consensus 544 ~L~~~l~~~~~~v~~~A~~al~~l~~~---c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~ 620 (1023)
T 4hat_C 544 KLFEFMHETHEGVQDMACDTFIKIVQK---CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEE 620 (1023)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHH---HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHH---HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 566666677899999999999999953 4444432 11334333 3333445566677788888887654
Q ss_pred C
Q 005282 309 S 309 (704)
Q Consensus 309 ~ 309 (704)
+
T Consensus 621 ~ 621 (1023)
T 4hat_C 621 R 621 (1023)
T ss_dssp C
T ss_pred C
Confidence 4
No 138
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.20 E-value=0.15 Score=46.87 Aligned_cols=223 Identities=11% Similarity=0.117 Sum_probs=140.0
Q ss_pred HHHHHHHHHHHhhc-CChhhHHHHHHc-CCcHHHHHHHhhccCC--CC--CcchhHHHHHHHHHHHHhhhcChhhhhhhh
Q 005282 117 EVEKECAFALGLLA-VKPEHQQIIVDT-GALPHLVSLLKQYKNG--GN--SRALSGVIRRAADAITNLAHENANIKTRVR 190 (704)
Q Consensus 117 ~v~~~a~~~L~~l~-~~~~~~~~~~~~-g~l~~L~~lL~~~~~~--~~--~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 190 (704)
+.|+.|+.-|+.=- ..++....+... |.+..|++-+-+..+. ++ ......=.-+++..|..++ .+++.+..+.
T Consensus 16 ~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvA-shpetr~~Fl 94 (268)
T 2fv2_A 16 ETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVA-SHPETRSAFL 94 (268)
T ss_dssp TTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHH-HCTTTHHHHH
T ss_pred hhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHH-cCcchhhHHH
Confidence 56777777766655 455555556555 5555555544332211 00 0000112234444455555 4888999999
Q ss_pred ccCCcHHHHHHhcCCC-----HHHHHHHHHHHHHhcc-CCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 005282 191 VEDGIPPLVELLKFVD-----VKVQRAAAGALRTLAF-KNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVH 264 (704)
Q Consensus 191 ~~~~i~~L~~ll~~~~-----~~~~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 264 (704)
+.++.-.|..+|...+ +.+|..++++++.+.. ++++....+.+.+++|..++.+..+++-.+..|..++..+..
T Consensus 95 ~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL~ 174 (268)
T 2fv2_A 95 AAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILL 174 (268)
T ss_dssp HTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhc
Confidence 9999889999998433 5889999999999986 345666667789999999999999999999999999988876
Q ss_pred CChhhHHHHHH--------cCCHHHHH-HHhcCCChhHHHHHHHHHHHHhccCCcchHHHHh-------cCChHHHHHhh
Q 005282 265 SSPSIKKEVIL--------AGALQPVI-GLLSSSCSESKREAALLLGQFAAADSNSKVHIVQ-------RGAVRPLIEML 328 (704)
Q Consensus 265 ~~~~~~~~~~~--------~~~l~~L~-~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-------~~~i~~L~~ll 328 (704)
++. ....+.. ..++..++ .+..++++++.+..+++-..++. ++..+..+.. .|.+..++
T Consensus 175 dd~-GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsd-n~rar~aL~~~LP~~Lrd~tf~~~l--- 249 (268)
T 2fv2_A 175 DDT-GLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSD-NPRAREALRQCLPDQLKDTTFAQVL--- 249 (268)
T ss_dssp SHH-HHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT-SHHHHHHHHHHSCGGGTSSTTHHHH---
T ss_pred cch-hHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc-CHHHHHHHHHhCcHHhhChHHHHHH---
Confidence 532 2221111 12333333 33456778888888888888864 4433333321 12222222
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 005282 329 QSPDSQLKEMSAFALGRL 346 (704)
Q Consensus 329 ~~~~~~v~~~a~~~L~~l 346 (704)
.+|+.++.+-...+.|+
T Consensus 250 -~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 250 -KDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp -TSCHHHHHHHHHHHHHS
T ss_pred -hcCHHHHHHHHHHHHhc
Confidence 25677777776666665
No 139
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=96.17 E-value=0.043 Score=63.26 Aligned_cols=302 Identities=12% Similarity=0.086 Sum_probs=158.0
Q ss_pred hHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-C--ChhhHHHHH
Q 005282 64 DRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-V--KPEHQQIIV 140 (704)
Q Consensus 64 ~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~--~~~~~~~~~ 140 (704)
+...+..++.++.....--.. ..+++.+.++.+..+|..+ +++..|+.+|..+. . .++.+..++
T Consensus 206 ~~~l~~~~L~~l~s~i~wi~~-~~i~~~~ll~~l~~~L~~~------------~~r~~A~ecL~ei~~k~~~~~~k~~li 272 (980)
T 3ibv_A 206 NYGTVGLCLQVYAQWVSWINI-NLIVNEPCMNLLYSFLQIE------------ELRCAACETMTEIVNKKMKPLEKLNLL 272 (980)
T ss_dssp CHHHHHHHHHHHHHHTTTSCH-HHHHCHHHHHHHHHHTTSH------------HHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhcCH-HhhhcchHHHHHHHHcCCh------------HHHHHHHHHHHHHHHcCCChhhHHHHH
Confidence 334667888888887763222 3445667888899888763 79999999999999 2 344444444
Q ss_pred HcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhh------cCh-----hh--hhhhhccCCcHHHHHHhcCCCH
Q 005282 141 DTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAH------ENA-----NI--KTRVRVEDGIPPLVELLKFVDV 207 (704)
Q Consensus 141 ~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~------~~~-----~~--~~~~~~~~~i~~L~~ll~~~~~ 207 (704)
.. + .+...+...... ..+.++.+..+..+..++. ..+ +. +..-.-.+.++.++.++.+++.
T Consensus 273 ~~--l-~L~~~~~~l~~~---~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~d 346 (980)
T 3ibv_A 273 NI--L-NLNLFFSKSQEQ---STDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYD 346 (980)
T ss_dssp HH--H-HHHHHHCC--------CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSH
T ss_pred HH--H-hHHHHHHHHhcc---cccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCch
Confidence 33 1 122222221100 1123555544444433321 111 00 0011223678888899998888
Q ss_pred HHHHHHHHHHHHhccCCc--h----hhHHh--HhcCChHHHHHhhcCC------C----------HHHHHHHHHHHHHHh
Q 005282 208 KVQRAAAGALRTLAFKND--E----NKKLI--VECNALPTLVLMLRSE------D----------ASVHFEAVGVIGNLV 263 (704)
Q Consensus 208 ~~~~~a~~~L~~l~~~~~--~----~~~~~--~~~~~i~~L~~lL~~~------~----------~~v~~~a~~~L~~l~ 263 (704)
++-..++..+..+..... . ..... .-...++.+++-+.-+ + .+.|+.....+..++
T Consensus 347 eVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~ 426 (980)
T 3ibv_A 347 ETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTIN 426 (980)
T ss_dssp HHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 888777776665542100 0 00110 0011233344434311 1 134444442333332
Q ss_pred cCChhhHHHHHHcCCHHHHHHHhc---CCChhHHHHHHHHHHHHhccCCcchHHH-Hhc----CChHHHHHhhC-----C
Q 005282 264 HSSPSIKKEVILAGALQPVIGLLS---SSCSESKREAALLLGQFAAADSNSKVHI-VQR----GAVRPLIEMLQ-----S 330 (704)
Q Consensus 264 ~~~~~~~~~~~~~~~l~~L~~ll~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~----~~i~~L~~ll~-----~ 330 (704)
.-.+...-...-.-+.+.+...+. +.++...+.++.+|+.++.+-......+ -.. .+++.+..++. .
T Consensus 427 ~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~ 506 (980)
T 3ibv_A 427 SIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRH 506 (980)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTC
T ss_pred hcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCC
Confidence 222221111000011112223332 3457778999999999876543321111 001 13455555544 5
Q ss_pred CCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhh------cCCChhHHHHHHHHHHHccc
Q 005282 331 PDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLL------DSKNGSLQHNAAFALYGLAD 389 (704)
Q Consensus 331 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll------~~~~~~v~~~a~~~L~~l~~ 389 (704)
+.+.++..++++++..+..-... ...+++++..+ ++.++.++..|+.++.+++.
T Consensus 507 ~hp~V~~~~~~~l~rys~~~~~~-----~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~ 566 (980)
T 3ibv_A 507 PHPLVQLLYMEILVRYASFFDYE-----SAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVK 566 (980)
T ss_dssp CCHHHHHHHHHHHHHTGGGGGTC-----CTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhcC-----chhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHH
Confidence 67899999999999988653321 13445555443 35677899999999999985
No 140
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=95.93 E-value=0.28 Score=46.30 Aligned_cols=166 Identities=10% Similarity=0.068 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc----CCCHHHHHHHHHHHHHhccCCch--hhHHhHh-cCChH
Q 005282 166 GVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLK----FVDVKVQRAAAGALRTLAFKNDE--NKKLIVE-CNALP 238 (704)
Q Consensus 166 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~----~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~-~~~i~ 238 (704)
.-+..++..|......++.. .+ ..+..+++.+. +.+..+...++.+|..+...-.+ .+..-.+ .-++|
T Consensus 61 k~~~~ale~L~~~l~~~~~~--~~---~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP 135 (266)
T 2of3_A 61 KQHLAALDSLVRLADTSPRS--LL---SNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVP 135 (266)
T ss_dssp HHHHHHHHHHHHHHHHCHHH--HH---HTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhChHH--HH---HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 44455555555554333321 11 22333444333 67888888888888887431000 0000111 22589
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhc
Q 005282 239 TLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQR 318 (704)
Q Consensus 239 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 318 (704)
.|+.-+.++.+.+|..+-.++..+....+ ...+.+.++.-+.+.++..+..++..+..+...+... ..
T Consensus 136 ~LveKlGd~k~~vR~~~r~il~~l~~v~~-------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~-----~~ 203 (266)
T 2of3_A 136 YLLLKTGEAKDNMRTSVRDIVNVLSDVVG-------PLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS-----PL 203 (266)
T ss_dssp HHHHGGGCSSHHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG-----GG
T ss_pred HHHHHhCCChHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC-----cc
Confidence 99999999999999988888877653211 1235677888889999999999999888876433222 23
Q ss_pred CCh---HHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 005282 319 GAV---RPLIEMLQSPDSQLKEMSAFALGRLAQ 348 (704)
Q Consensus 319 ~~i---~~L~~ll~~~~~~v~~~a~~~L~~l~~ 348 (704)
+.+ +.+..++.+.+..||..|..++..+-.
T Consensus 204 ~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 204 KSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp GGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 468 999999999999999999999986654
No 141
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=95.88 E-value=1.1 Score=51.62 Aligned_cols=353 Identities=11% Similarity=0.073 Sum_probs=176.5
Q ss_pred CChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-C--Ch-----------hhHHHHHHcCCcHHHHHHHhhccC
Q 005282 92 GAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-V--KP-----------EHQQIIVDTGALPHLVSLLKQYKN 157 (704)
Q Consensus 92 g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~--~~-----------~~~~~~~~~g~l~~L~~lL~~~~~ 157 (704)
+.++.+++.+..+. ......+.+|..|. . +- ..++.+... ++.++.++...-.
T Consensus 150 ~fi~dLv~~~~~~~-----------~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~--~~~Il~ll~~iL~ 216 (1073)
T 3gjx_A 150 TFISDIVGASRTSE-----------SLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNE--FSQIFQLCQFVME 216 (1073)
T ss_dssp THHHHHHHHHHHCH-----------HHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHT--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCH-----------HHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH--HHHHHHHHHHHhc
Confidence 45666666665332 45566777777776 2 10 112233332 5556555533211
Q ss_pred CCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHH-HHHhcCCCHHHHHHHHHHHHHhccCC-chhhHHhHh--
Q 005282 158 GGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPL-VELLKFVDVKVQRAAAGALRTLAFKN-DENKKLIVE-- 233 (704)
Q Consensus 158 ~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L-~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~-- 233 (704)
... ..++...++.+|..+...-+ -..+...+.++.+ ..++ +++.++..|+.||..+.... ++....+..
T Consensus 217 ~~~---~~~lv~~~L~~L~~~~sWI~--i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf 289 (1073)
T 3gjx_A 217 NSQ---NAPLVHATLETLLRFLNWIP--LGYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEEQFETLF 289 (1073)
T ss_dssp HCC---CHHHHHHHHHHHHHHTTTSC--THHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHHHHHHHH
T ss_pred ccC---CHHHHHHHHHHHHHHHHhcC--HHHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 000 13778888899998875433 2346677777877 4665 46789999999999997532 221222211
Q ss_pred cCChHHHHHhh-------------cCCCHHHHHHHHHHHHHHhcCChhhHHHHHHc-C-------CHHHHHHHhcCCChh
Q 005282 234 CNALPTLVLML-------------RSEDASVHFEAVGVIGNLVHSSPSIKKEVILA-G-------ALQPVIGLLSSSCSE 292 (704)
Q Consensus 234 ~~~i~~L~~lL-------------~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~-------~l~~L~~ll~~~~~~ 292 (704)
.+++..+..++ .+.+.+.....+..+..+... ....+... + ++..++.+-..++.+
T Consensus 290 ~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~---~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~e 366 (1073)
T 3gjx_A 290 TLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKE---HGQLLEKRLNLREALMEALHYMLLVSEVEETE 366 (1073)
T ss_dssp HHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHH---HHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHH---HHHHHhcCccchHHHHHHHHHHHHHhCCCcHH
Confidence 01111111111 122345555566666665532 12222221 2 223344444566777
Q ss_pred HHHHHHHHHHHHhc----cCC-----c------------chHHHHhcCCh----HHHHHhhCCCCH--------------
Q 005282 293 SKREAALLLGQFAA----ADS-----N------------SKVHIVQRGAV----RPLIEMLQSPDS-------------- 333 (704)
Q Consensus 293 ~~~~a~~~L~~l~~----~~~-----~------------~~~~~~~~~~i----~~L~~ll~~~~~-------------- 333 (704)
+...+...-..+.. ..+ . .+..+. ..++ ..++.-+..++.
T Consensus 367 i~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y-~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re 445 (1073)
T 3gjx_A 367 IFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLY-LTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVRE 445 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTT-HHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEE
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHH-HHHHHHHHHHHHHhcCCCccccccCcccchHHHH
Confidence 76666654333321 111 0 011000 1122 222222221110
Q ss_pred --------HHHHHHHHHHHHhhcC-CchhhhHHhhCChHHHHHhhcC--CChhHHHHHHHHHHHcccCCc---hhhHHHh
Q 005282 334 --------QLKEMSAFALGRLAQD-THNQAGIAQDGGILPLLKLLDS--KNGSLQHNAAFALYGLADNED---NVADLVR 399 (704)
Q Consensus 334 --------~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~---~~~~l~~ 399 (704)
.+....-.+|..++.- ......+ ..+.+-+.+.. .++...+.++++++.+++.-. ....+.
T Consensus 446 ~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i----~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp- 520 (1073)
T 3gjx_A 446 FMKDTDSINLYKNMRETLVYLTHLDYVDTEII----MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLV- 520 (1073)
T ss_dssp ECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHH----HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-
T ss_pred HHhhcchHHHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHH-
Confidence 1111222222222210 1110000 11223333332 357788999999999975211 111121
Q ss_pred hCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhc-----cHHHHHHHHHHHHhccCCCccceeeecC
Q 005282 400 VGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVA-----DRAVKRRVTLALAHLCAPDDCKTIFIDN 474 (704)
Q Consensus 400 ~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~-----~~~v~~~a~~~L~~l~~~~~~~~~l~~~ 474 (704)
.+++.|+.+.... ...+....+++++..++.-.....+++
T Consensus 521 ----------------------------------~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~- 565 (1073)
T 3gjx_A 521 ----------------------------------TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLK- 565 (1073)
T ss_dssp ----------------------------------HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-
T ss_pred ----------------------------------HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHH-
Confidence 2556677776544 234555677899888654322222222
Q ss_pred CcHHHHHHHHhhcchhhhhhHHHHHHHHhhhcCC
Q 005282 475 NGLELLLGLLESTSVKQREESSVALYKLATKATS 508 (704)
Q Consensus 475 ~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~ 508 (704)
..+..|++.+..+++.++.+|+.++..++.++..
T Consensus 566 ~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~ 599 (1073)
T 3gjx_A 566 TVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRR 599 (1073)
T ss_dssp HHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777788999999999999999998863
No 142
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=95.87 E-value=0.014 Score=54.71 Aligned_cols=175 Identities=18% Similarity=0.140 Sum_probs=117.6
Q ss_pred hhhHHHHHHHHH-----HHHHhhc--ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChh
Q 005282 62 ETDRAAAKTASH-----ALVEFAK--NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPE 134 (704)
Q Consensus 62 ~~~~~~~~~a~~-----~L~~l~~--~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~ 134 (704)
+.+..++..++. .|..+.. ++.++......-..+.|..++.+++. .||..++..+ .
T Consensus 61 d~~~~VR~~AA~~l~~~~l~~L~~D~~~~VR~~aA~~L~~~~L~~ll~D~d~----------~VR~~aA~~l---~---- 123 (244)
T 1lrv_A 61 DPFWERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDR----------EVRITVADRL---P---- 123 (244)
T ss_dssp CSSHHHHHHHHTTSCGGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCH----------HHHHHHHHHS---C----
T ss_pred CCCHHHHHHHHHhCCHHHHHHHccCcCHHHHHHHHHHCCHHHHHHHHcCCCH----------HHHHHHHHhC---C----
Confidence 344667777774 3444544 46777777776556777888887754 8998888743 1
Q ss_pred hHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHH
Q 005282 135 HQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAA 214 (704)
Q Consensus 135 ~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~ 214 (704)
.+.+..++++++ +.++..++.. +. .+.+..+++++++.|+..++
T Consensus 124 ----------~~~L~~L~~D~d--------~~VR~~aA~~---l~---------------~~~l~~l~~D~d~~VR~~aa 167 (244)
T 1lrv_A 124 ----------LEQLEQMAADRD--------YLVRAYVVQR---IP---------------PGRLFRFMRDEDRQVRKLVA 167 (244)
T ss_dssp ----------TGGGGGGTTCSS--------HHHHHHHHHH---SC---------------GGGGGGTTTCSCHHHHHHHH
T ss_pred ----------HHHHHHHHcCCC--------HHHHHHHHHh---cC---------------HHHHHHHHcCCCHHHHHHHH
Confidence 123444444443 3888877762 11 12455677789999999888
Q ss_pred HHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHH
Q 005282 215 GALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESK 294 (704)
Q Consensus 215 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~ 294 (704)
.. +. .+.+..+++++++.||..++..+ ..+.|..++.++++.++
T Consensus 168 ~~---l~---------------~~ll~~ll~D~d~~VR~aaa~~l------------------~~~~L~~Ll~D~d~~VR 211 (244)
T 1lrv_A 168 KR---LP---------------EESLGLMTQDPEPEVRRIVASRL------------------RGDDLLELLHDPDWTVR 211 (244)
T ss_dssp HH---SC---------------GGGGGGSTTCSSHHHHHHHHHHC------------------CGGGGGGGGGCSSHHHH
T ss_pred Hc---CC---------------HHHHHHHHcCCCHHHHHHHHHhC------------------CHHHHHHHHcCCCHHHH
Confidence 75 21 13455678899999999988753 13567778899999999
Q ss_pred HHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHH
Q 005282 295 REAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALG 344 (704)
Q Consensus 295 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 344 (704)
..++..+. .+.|..+ ++++..|+..+...|+
T Consensus 212 ~~aa~~l~------------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 212 LAAVEHAS------------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp HHHHHHSC------------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred HHHHHcCC------------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 98887743 2455555 8889999988876543
No 143
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=95.67 E-value=0.11 Score=47.44 Aligned_cols=144 Identities=15% Similarity=0.080 Sum_probs=103.1
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHH-HhcCCChhHHHHHHHHHHHHhc-cCCcchHH
Q 005282 237 LPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIG-LLSSSCSESKREAALLLGQFAA-ADSNSKVH 314 (704)
Q Consensus 237 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~-ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~~ 314 (704)
++....+.+++..++|..|+.+|+.+ ... ...++.+.. +..+++..++..++.++..++. .+++.
T Consensus 73 ~~la~~L~~~~~deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~--- 139 (240)
T 3l9t_A 73 KKLAFLAYQSDVYQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK--- 139 (240)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT---
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH---
Confidence 45566677788889999999999887 321 124566666 5567889999999999999884 34432
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHccc-CCch
Q 005282 315 IVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD-NEDN 393 (704)
Q Consensus 315 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~ 393 (704)
.++.+..+.++++..+|..|...+.-.+..+.. ..--.-.++.+-.+..+++.-||+.+++.|..++. +|+-
T Consensus 140 -----~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~--k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~ 212 (240)
T 3l9t_A 140 -----ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYF--KENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDL 212 (240)
T ss_dssp -----THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTT--TTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred -----HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchh--hcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHH
Confidence 578889999999999999998887543432111 00001123444456677888999999999999996 7887
Q ss_pred hhHHHhh
Q 005282 394 VADLVRV 400 (704)
Q Consensus 394 ~~~l~~~ 400 (704)
...+++.
T Consensus 213 V~~~~~~ 219 (240)
T 3l9t_A 213 VKIELKN 219 (240)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 7777774
No 144
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=95.67 E-value=0.0048 Score=50.02 Aligned_cols=96 Identities=11% Similarity=0.144 Sum_probs=69.4
Q ss_pred cEEEEEcCeEeehhHHHHhhcC-HHHHHhhcCCCC-CCCCCceEcCCCCHHHHHHHHHHHhcCccccChh-hHHHHHHHH
Q 005282 537 DVTFVVEGKQFYAHRICLLASS-DAFRAMFDGGYK-EKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVD-IAQDLLRAA 613 (704)
Q Consensus 537 d~~~~~~~~~~~~hk~iL~~~s-~~f~~~f~~~~~-e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~-~~~~ll~~A 613 (704)
-|.+-|||..|...+..|.... .++.+||.+... ....+.+-+ |=++..|..+|.|+-+|++.++.+ ....+++-|
T Consensus 6 ~V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnylR~G~l~~p~~~~~~~~~~Ea 84 (115)
T 3kvt_A 6 RVIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFF-DRHPGVFAQIINYYRSGKLHYPTDVCGPLFEEEL 84 (115)
T ss_dssp EEEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEE-CSCTTTHHHHHHHHHHSCBCCCSSSCHHHHHHHH
T ss_pred EEEEEECCEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEE-ecChHHHHHHHHHhcCCCCCCCCcccHHHHHHHH
Confidence 4788899999999999998663 456667764321 123345554 568899999999999999887654 468899999
Q ss_pred hhhChHhHH--HHHHHHHHhhC
Q 005282 614 DQYLLEGLK--RLCEYSIAQII 633 (704)
Q Consensus 614 ~~~~~~~l~--~~c~~~l~~~~ 633 (704)
.+|+++... ..|...+.+..
T Consensus 85 ~fy~i~~~~l~~CC~~~~~~~~ 106 (115)
T 3kvt_A 85 EFWGLDSNQVEPCCWMTYTAHR 106 (115)
T ss_dssp HHHTCCGGGBCGGGSHHHHSCC
T ss_pred HHhCCChHHHHHHHHHHHHhcc
Confidence 999998643 34655554433
No 145
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=95.35 E-value=0.72 Score=54.60 Aligned_cols=260 Identities=13% Similarity=0.087 Sum_probs=135.7
Q ss_pred chhhHHHHHHHHHHHHHhhc------ChhHHHHHHhCCChHHHHhhccCC-CcCCCCCCCCchHHHHHHHHHHHhhc--C
Q 005282 61 DETDRAAAKTASHALVEFAK------NEEIVSLIVDNGAVPALVEHLQTP-PQLTNAQIPYEHEVEKECAFALGLLA--V 131 (704)
Q Consensus 61 ~~~~~~~~~~a~~~L~~l~~------~~~~~~~l~~~g~i~~L~~lL~~~-~~~~~~~~~~d~~v~~~a~~~L~~l~--~ 131 (704)
.+.+..++..|+..|.+... .++.+. .++..++..+...-... .. +..++...+.++..++ +
T Consensus 57 ~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~-~Ir~~ll~~l~~~~~~~~~~--------~~~vr~kla~~la~Ia~~d 127 (1204)
T 3a6p_A 57 KTQVAIVRHFGLQILEHVVKFRWNGMSRLEKV-YLKNSVMELIANGTLNILEE--------ENHIKDALSRIVVEMIKRE 127 (1204)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHH-HHHHHHHHHHHHSSCCTTSS--------CHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHhcccCCHHHHH-HHHHHHHHHHHhhccccccc--------cHHHHHHHHHHHHHHHHHh
Confidence 34455678888888887643 233333 33444444444332111 01 2479999999999998 3
Q ss_pred ChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChh------hhh-----hhhcc--CCcHHH
Q 005282 132 KPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENAN------IKT-----RVRVE--DGIPPL 198 (704)
Q Consensus 132 ~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~------~~~-----~~~~~--~~i~~L 198 (704)
.|+.- .+.++.|++++.+.. ..++.++.+|..++.+... .+. .+... .+++.+
T Consensus 128 ~p~~W-----p~ll~~L~~~~~~~~---------~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~ 193 (1204)
T 3a6p_A 128 WPQHW-----PDMLIELDTLSKQGE---------TQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFL 193 (1204)
T ss_dssp STTTC-----TTHHHHHHHHHHTCH---------HHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHH
T ss_pred Ccccc-----hHHHHHHHHHhcCCH---------HHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33210 245677777776521 5577788888888743111 111 11111 112223
Q ss_pred HHHhcC-------------------CCHHHHHHHHHHHHHhccCCchhhHHhHhcC--ChHHHHHhhcCCCHHHHHHHHH
Q 005282 199 VELLKF-------------------VDVKVQRAAAGALRTLAFKNDENKKLIVECN--ALPTLVLMLRSEDASVHFEAVG 257 (704)
Q Consensus 199 ~~ll~~-------------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~--~i~~L~~lL~~~~~~v~~~a~~ 257 (704)
..+++. .+..+...++.++.+...--+ ...+.+.. .++.+..++. ++.++..|+.
T Consensus 194 ~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~--~~~i~~~~~~ll~~l~~~l~--~~~lr~~A~e 269 (1204)
T 3a6p_A 194 LNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVS--MSHITAENCKLLEILCLLLN--EQELQLGAAE 269 (1204)
T ss_dssp HHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSC--HHHHHTTTSHHHHHHHHGGG--CTTTHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccC--HHHHHhccchHHHHHHHHcC--CHHHHHHHHH
Confidence 333322 123466677777766543111 12222322 5677776664 5788999999
Q ss_pred HHHHHhcCCh--hhHHHHHH---cCCHHHHHHHhc--C------CChhHHHHHHHHHHHHhccCCcchHHHH--------
Q 005282 258 VIGNLVHSSP--SIKKEVIL---AGALQPVIGLLS--S------SCSESKREAALLLGQFAAADSNSKVHIV-------- 316 (704)
Q Consensus 258 ~L~~l~~~~~--~~~~~~~~---~~~l~~L~~ll~--~------~~~~~~~~a~~~L~~l~~~~~~~~~~~~-------- 316 (704)
+|..+..... .....++. ..++..++..+. + .+.+..+..+..+..+... ....+.
T Consensus 270 cL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~---l~~l~~~~~~~~~~ 346 (1204)
T 3a6p_A 270 CLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQ---LCALLGADSDVETP 346 (1204)
T ss_dssp HHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHH---HHHHHHTCSSCCCC
T ss_pred HHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHH---HHHHHhccccccCh
Confidence 9999996532 21111111 011234444432 1 1234455555555555410 111000
Q ss_pred --hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q 005282 317 --QRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDT 350 (704)
Q Consensus 317 --~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 350 (704)
-.++++.++.+..+++..+...++.....+....
T Consensus 347 ~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~ 382 (1204)
T 3a6p_A 347 SNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHE 382 (1204)
T ss_dssp TTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCT
T ss_pred hHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcc
Confidence 0245777888888888888777777666566553
No 146
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=95.27 E-value=0.038 Score=45.39 Aligned_cols=91 Identities=15% Similarity=0.188 Sum_probs=65.4
Q ss_pred ccEEEEEcCeEeehhHHHHhhcCHHHHHhhcCC----CCCCCCCceEcCCCCHHHHHHHHHHHhcCccccChh-hHHHHH
Q 005282 536 SDVTFVVEGKQFYAHRICLLASSDAFRAMFDGG----YKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVD-IAQDLL 610 (704)
Q Consensus 536 ~d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~----~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~-~~~~ll 610 (704)
.-|.+-|||..|...+..|...-. ++|... +.....+.+-+ |=++..|..+|.|+-+|++.++.+ .+..++
T Consensus 13 ~~V~LNVGG~~F~t~~~TL~~~p~---S~L~~~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnflR~G~l~~p~~~~~~~l~ 88 (124)
T 1s1g_A 13 ELIVLNVSGRRFQTWRTTLERYPD---TLLGSTEKEFFFNEDTKEYFF-DRDPEVFRCVLNFYRTGKLHYPRYECISAYD 88 (124)
T ss_dssp CEEEEEETTEEEEEEHHHHTTSTT---SSTTSSGGGGTBCSSSCSEEE-CSCHHHHHHHHHHHHHSCBCCCTTSCHHHHH
T ss_pred CEEEEEeCCEEEEEeHHHHhcCCC---ceecccCCcccccCCCCcEEE-cCChHHHHHHHHHHhcCCCCCCCCcCHHHHH
Confidence 457888999999999999975432 233221 11122345554 569999999999999999987655 478999
Q ss_pred HHHhhhChHhH--HHHHHHHHH
Q 005282 611 RAADQYLLEGL--KRLCEYSIA 630 (704)
Q Consensus 611 ~~A~~~~~~~l--~~~c~~~l~ 630 (704)
+-|++|+++.+ ...|.....
T Consensus 89 ~Ea~fy~i~~l~l~~cC~~~~~ 110 (124)
T 1s1g_A 89 DELAFYGILPEIIGDCCYEEYK 110 (124)
T ss_dssp HHHHHTTCCGGGBCHHHHHHHH
T ss_pred HHHHHcCCChHHHHHHHHHHHH
Confidence 99999999986 355555543
No 147
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.02 E-value=2.1 Score=41.40 Aligned_cols=193 Identities=12% Similarity=0.072 Sum_probs=111.3
Q ss_pred hHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHH
Q 005282 94 VPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAAD 173 (704)
Q Consensus 94 i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~ 173 (704)
+..+..+++-+. +.+--++-+++-++-+|.....+.+.+.-..++..+...-.+.. .+..+..+++
T Consensus 105 l~~l~kil~WP~-----------~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~---~p~n~ml~lR 170 (304)
T 3ebb_A 105 LQILWKAINCPE-----------DIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKG---KPANQLLALR 170 (304)
T ss_dssp HHHHHHHHTSCT-----------TTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTS---CHHHHHHHHH
T ss_pred HHHHHHHHcCCH-----------HhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCC---ChHHHHHHHH
Confidence 456666664333 45666777777777777776666554443445533322211111 1256889999
Q ss_pred HHHHhhhcChhhhhhhhcc--CCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc-CCCHH
Q 005282 174 AITNLAHENANIKTRVRVE--DGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR-SEDAS 250 (704)
Q Consensus 174 ~L~~l~~~~~~~~~~~~~~--~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~ 250 (704)
+++|+.. ++..+..+... .+++.+...+.+.+..++..+...+.|++......+..-.....+..+..+++ ..+.+
T Consensus 171 ~l~NlF~-~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~E 249 (304)
T 3ebb_A 171 TFCNCFV-GQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLE 249 (304)
T ss_dssp HHHHGGG-SHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHH
T ss_pred HHHHccC-CchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHH
Confidence 9999986 55566655432 23444555555678999999999999997521111100001113444555554 45889
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHH
Q 005282 251 VHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLL 301 (704)
Q Consensus 251 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L 301 (704)
....++.+|+++...+.+..+.....|+-..+-++.....+.-...++..+
T Consensus 250 alyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~ 300 (304)
T 3ebb_A 250 ATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFI 300 (304)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHH
Confidence 999999999999977555444333444444444555443333344444444
No 148
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=94.88 E-value=0.23 Score=45.33 Aligned_cols=133 Identities=17% Similarity=0.146 Sum_probs=90.7
Q ss_pred hHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhh-cChhhhhhhhccCC
Q 005282 116 HEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAH-ENANIKTRVRVEDG 194 (704)
Q Consensus 116 ~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~~~ 194 (704)
.++|..|+.+|+.+ . + . ...++.+...+.... .+.+++.+..++..++. ..++ ..
T Consensus 85 deVR~~Av~lLg~~-~-~-~------~~~L~~ir~~va~D~-------~WrVre~lA~a~~~~~~~~~pe--------~~ 140 (240)
T 3l9t_A 85 YQVRMYAVFLFGYL-S-K-D------KEILIFMRDEVSKDN-------NWRVQEVLAKAFDEFCKKIEYK--------KA 140 (240)
T ss_dssp HHHHHHHHHHHHHT-T-T-S------HHHHHHHHHTGGGCS-------CHHHHHHHHHHHHHHHHHHCTT--------TT
T ss_pred hHHHHHHHHHHHhc-c-C-c------HHHHHHHHHHhCCCC-------CccHHHHHHHHHHHHHHhcCHH--------HH
Confidence 39999999998887 2 1 1 112233333233222 27999999999999985 4443 25
Q ss_pred cHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 005282 195 IPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVI 274 (704)
Q Consensus 195 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 274 (704)
++.+...+.+++..+|+.|+..+.--+. .+..+. .-.-+++.|-.+..+++.-|+....+.|..++..+|+....++
T Consensus 141 l~~~~~W~~d~n~~VRR~Ase~~rpW~~-~~~~k~--dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~ 217 (240)
T 3l9t_A 141 LPIIDEWLKSSNLHTRRAATEGLRIWTN-RPYFKE--NPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIEL 217 (240)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHTCSGGG-STTTTT--CHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHhhHHHhc-cchhhc--CHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHH
Confidence 6788899999999999999988765332 111110 0011356666667788999999999999999999888666555
Q ss_pred H
Q 005282 275 L 275 (704)
Q Consensus 275 ~ 275 (704)
+
T Consensus 218 ~ 218 (240)
T 3l9t_A 218 K 218 (240)
T ss_dssp H
T ss_pred H
Confidence 4
No 149
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=94.68 E-value=3.9 Score=41.54 Aligned_cols=161 Identities=16% Similarity=0.110 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHhhcC-hhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcC
Q 005282 65 RAAAKTASHALVEFAKN-EEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTG 143 (704)
Q Consensus 65 ~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g 143 (704)
....+-|+..+...... |+..+.. +..++.++++.+. .||.+|++.|..+|.+ ++...+.
T Consensus 42 ~k~K~LaaQ~I~kffk~FP~l~~~A-----i~a~lDLcEDed~----------~IR~qaik~Lp~~ck~-~~i~kia--- 102 (507)
T 3u0r_A 42 TKEKRLAAQFIPKFFKHFPELADSA-----INAQLDLCEDEDV----------SIRRQAIKELPQFATG-ENLPRVA--- 102 (507)
T ss_dssp HHHHHHHHHHHHHHGGGCGGGHHHH-----HHHHHHHHTCSSH----------HHHHHHHHHGGGGCCT-TCHHHHH---
T ss_pred HHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccH----------HHHHHHHHhhHHHhhh-hhhhhHH---
Confidence 34566677777777764 7776654 8999999999865 8999999999999955 5544444
Q ss_pred CcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC
Q 005282 144 ALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFK 223 (704)
Q Consensus 144 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 223 (704)
..|.++|...+. .-+...-.+|..+...++. +.+..+...+..+++.+|+.++..|..-...
T Consensus 103 --DvL~QlLqtdd~--------~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~ 164 (507)
T 3u0r_A 103 --DILTQLLQTDDS--------AEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLSTKLKT 164 (507)
T ss_dssp --HHHHHHTTCCCH--------HHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHHHHGGG
T ss_pred --HHHHHHHhccch--------HHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHHHHHhh
Confidence 688899986553 4455555666666654443 3455566666667889999988888665431
Q ss_pred C-chhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHH
Q 005282 224 N-DENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNL 262 (704)
Q Consensus 224 ~-~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l 262 (704)
- ++....-.+.-++..+.+.|.+-...--.....+|..+
T Consensus 165 l~~~~l~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~l 204 (507)
T 3u0r_A 165 LPDEVLTKEVEELILTESKKVLEDVTGEEFVLFMKILSGL 204 (507)
T ss_dssp SCTTTSCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTS
T ss_pred cchhhccHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhc
Confidence 1 11111112222455566667665555545555555444
No 150
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=94.64 E-value=0.71 Score=44.26 Aligned_cols=135 Identities=17% Similarity=0.232 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc-
Q 005282 167 VIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR- 245 (704)
Q Consensus 167 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~- 245 (704)
+...+...|.-+. ++...-+-+++.+|+..+....+-++.++.++.+..|...+. ..... ..--.+.+|.++..++
T Consensus 259 VvtR~FDLL~LLm-HdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSD-aksL~-~t~L~e~LPFi~~~i~~ 335 (619)
T 3c2g_A 259 VIIRTFDLLGLLL-HDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSD-AKALA-KTPLENILPFLLRLIEI 335 (619)
T ss_dssp HHHHHHHHHHHHC-CSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTT-CGGGG-TSCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-cccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecc-hHHHh-hccccccchHHHHHhcc
Confidence 3344444454444 466677789999999999999999999999999999999984 22211 1112346888888887
Q ss_pred CCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCC-------ChhHHHHHHHHHHHH
Q 005282 246 SEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSS-------CSESKREAALLLGQF 304 (704)
Q Consensus 246 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-------~~~~~~~a~~~L~~l 304 (704)
++++++.......|.|...+....++..+..|++..|-..+... +...+..+|..++|.
T Consensus 336 h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~ 401 (619)
T 3c2g_A 336 HPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNC 401 (619)
T ss_dssp CCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHH
T ss_pred CCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHH
Confidence 88999999999999999988877888888899999888777432 223355555555543
No 151
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=94.58 E-value=0.66 Score=44.47 Aligned_cols=136 Identities=19% Similarity=0.257 Sum_probs=101.8
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHH
Q 005282 118 VEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPP 197 (704)
Q Consensus 118 v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 197 (704)
|...+...|+-+-.+++.-+.+++.+++..+...+..++. ++.+.++..|...+.... -...--...+|.
T Consensus 259 VvtR~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~--------~l~RaG~KLLLQVSDaks--L~~t~L~e~LPF 328 (619)
T 3c2g_A 259 VIIRTFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNN--------DLIRAGCKLLLQVSDAKA--LAKTPLENILPF 328 (619)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCH--------HHHHHHHHHHHHHTTCGG--GGTSCCTTHHHH
T ss_pred HHHHHHHHHHHHhcccccccceeecccceeEEEEeecCCc--------HHHHhhhheeeeecchHH--HhhccccccchH
Confidence 3344555555555788888899999999999999988876 999999999998874221 112223456788
Q ss_pred HHHHhc-CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcC-------CCHHHHHHHHHHHHHHh
Q 005282 198 LVELLK-FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRS-------EDASVHFEAVGVIGNLV 263 (704)
Q Consensus 198 L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-------~~~~v~~~a~~~L~~l~ 263 (704)
++..++ +++.++.....+.|.|...+....++..+..|.++.|.+.+.. .+..-+..+|.+++|..
T Consensus 329 i~~~i~~h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~L 402 (619)
T 3c2g_A 329 LLRLIEIHPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCL 402 (619)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHH
Confidence 888887 7899999999999999998777888888899999999887652 23445556666666544
No 152
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=94.56 E-value=0.051 Score=45.64 Aligned_cols=92 Identities=15% Similarity=0.171 Sum_probs=65.4
Q ss_pred cccEEEEEcCeEeehhHHHHhhcCHHHHHhhcCC----CCCCCCCceEcCCCCHHHHHHHHHHHhcCccccChh-hHHHH
Q 005282 535 LSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGG----YKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVD-IAQDL 609 (704)
Q Consensus 535 ~~d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~----~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~-~~~~l 609 (704)
..-|.+-|||..|...+..|...-. ++|... ......+.+-+ |=++..|..+|.|+-+|++.++.+ .+..+
T Consensus 34 ~~~V~LNVGG~~F~T~~~TL~~~P~---S~L~~~~~~~~~~~~~g~yFi-DRdp~~F~~ILnflR~G~l~~p~~~~~~~l 109 (140)
T 2nz0_B 34 DELIVLNVSGRRFQTWRTTLERYPD---TLLGSTEKEFFFNEDTKEYFF-DRDPEVFRCVLNFYRTGKLHYPRYECISAY 109 (140)
T ss_dssp CCEEEEEETTEEEEEEHHHHHTCTT---STTTSGGGGGSEETTTTEEEE-CSCHHHHHHHHHHHHHSSBCCCTTSCHHHH
T ss_pred CCEEEEEECCEEEEeeHHHHhcCCC---eeecccCCcccccCCCCeEEE-eCCcHHHHHHHHHHhcCCcCCCCCcCHHHH
Confidence 3558888999999999999985432 233321 11122344554 569999999999999999887654 47889
Q ss_pred HHHHhhhChHhH--HHHHHHHHH
Q 005282 610 LRAADQYLLEGL--KRLCEYSIA 630 (704)
Q Consensus 610 l~~A~~~~~~~l--~~~c~~~l~ 630 (704)
++-|++|+++.+ ...|.....
T Consensus 110 ~eEa~fy~i~~l~l~~CC~~~~~ 132 (140)
T 2nz0_B 110 DDELAFYGILPEIIGDCCYEEYK 132 (140)
T ss_dssp HHHHHHHTCCGGGBCTTTHHHHH
T ss_pred HHHHHHcCCChHHHHHHHHHHHH
Confidence 999999999886 334555443
No 153
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.25 E-value=1.2 Score=43.22 Aligned_cols=174 Identities=15% Similarity=0.086 Sum_probs=100.4
Q ss_pred cHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChH----HHHHhhc-CCCHHHHHHHHHHHHHHhcCChhh
Q 005282 195 IPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALP----TLVLMLR-SEDASVHFEAVGVIGNLVHSSPSI 269 (704)
Q Consensus 195 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~----~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~ 269 (704)
+..+.+++.-+ .+.+..++..++-++. ++.....+.+.+.-. .+...+. ...+..+..++++++|+..+ +..
T Consensus 105 l~~l~kil~WP-~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~-~~g 181 (304)
T 3ebb_A 105 LQILWKAINCP-EDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVG-QAG 181 (304)
T ss_dssp HHHHHHHHTSC-TTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGS-HHH
T ss_pred HHHHHHHHcCC-HHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCC-chh
Confidence 34555555322 2455566666666664 454444444332222 2333333 23567789999999999976 555
Q ss_pred HHHHHH--cCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHh
Q 005282 270 KKEVIL--AGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQ-SPDSQLKEMSAFALGRL 346 (704)
Q Consensus 270 ~~~~~~--~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l 346 (704)
++.+.. ..+++.+...+.+.+..++..++..+.|++.........-....++..+..++. ..+.+....++-+|+++
T Consensus 182 ~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL 261 (304)
T 3ebb_A 182 QKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTL 261 (304)
T ss_dssp HHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 555443 234455555555667788888898999987531110000001113445555554 36889999999999999
Q ss_pred hcCCchhhhHHhhCChHHHH-HhhcC
Q 005282 347 AQDTHNQAGIAQDGGILPLL-KLLDS 371 (704)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~L~-~ll~~ 371 (704)
...+.....+.+.-++...+ +....
T Consensus 262 ~~~~~~~~~lak~l~~~~~v~~~~~~ 287 (304)
T 3ebb_A 262 ISDDSNAVQLAKSLGVDSQIKKYSSV 287 (304)
T ss_dssp HTTCHHHHHHHHHTTHHHHGGGGGGC
T ss_pred HhCChhHHHHHHHcCHHHHHHHHHhC
Confidence 98765555555554444444 34433
No 154
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=94.17 E-value=0.036 Score=44.12 Aligned_cols=89 Identities=12% Similarity=0.142 Sum_probs=62.9
Q ss_pred EEEEEcCeEeehhHHHHhhcCHHHHHhhcCCC----CCCCCCceEcCCCCHHHHHHHHHHHhcCccccChh-hHHHHHHH
Q 005282 538 VTFVVEGKQFYAHRICLLASSDAFRAMFDGGY----KEKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVD-IAQDLLRA 612 (704)
Q Consensus 538 ~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~----~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~-~~~~ll~~ 612 (704)
|.+-|||+.|...+..|..... ++|.... .....+.+-+ |=++..|..+|.|+-+|++.++.+ .+..+++-
T Consensus 2 V~LNVGG~~f~t~~~TL~~~p~---s~L~~~~~~~~~~~~~~~~Fi-DRdp~~F~~ILnflR~g~l~~p~~~~~~~l~~E 77 (105)
T 1nn7_A 2 IVLNVSGTRFQTWQDTLERYPD---TLLGSSERDFFYHPETQQYFF-DRDPDIFRHILNFYRTGKLHYPRHECISAYDEE 77 (105)
T ss_dssp EEEEETTEEEEECHHHHHTSCS---SSTTSGGGGGGEEGGGTEEEE-CSCTTTHHHHHHHHHHSCBCCCTTSCHHHHHHH
T ss_pred EEEEECCEEEEEeHHHHhcCCC---ccccccCCcccccCCCCcEEE-eCCcHHHHHHHHHHhcCCCCCCCCcCHHHHHHH
Confidence 6788999999999999975432 2332210 1112334444 458999999999999999887654 47889999
Q ss_pred HhhhChHhH--HHHHHHHHH
Q 005282 613 ADQYLLEGL--KRLCEYSIA 630 (704)
Q Consensus 613 A~~~~~~~l--~~~c~~~l~ 630 (704)
|++|+++.+ ...|.....
T Consensus 78 a~fy~i~~l~~~~cc~~~~~ 97 (105)
T 1nn7_A 78 LAFFGLIPEIIGDCCYEEYK 97 (105)
T ss_dssp HHHHTCCSCCBCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHH
Confidence 999999876 345555443
No 155
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=93.88 E-value=3.4 Score=38.28 Aligned_cols=162 Identities=17% Similarity=0.213 Sum_probs=102.6
Q ss_pred CChhhHHHHHHcCCcHHHHHHHhhccCCCCC---cchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCH
Q 005282 131 VKPEHQQIIVDTGALPHLVSLLKQYKNGGNS---RALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDV 207 (704)
Q Consensus 131 ~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~ 207 (704)
...++.+.+ ..+|+..|+..|......... ..+.+....++.+|..+..........+...+.+..|...+.++++
T Consensus 32 ~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~ 110 (233)
T 2f31_A 32 NPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVP 110 (233)
T ss_dssp SCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSH
T ss_pred CCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCc
Confidence 455677777 578899999999775432211 1134778889999999985444444555556778999999999999
Q ss_pred HHHHHHHHHHHHhccCCc-hh-hHHhH----------hcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhh-----
Q 005282 208 KVQRAAAGALRTLAFKND-EN-KKLIV----------ECNALPTLVLMLR-SEDASVHFEAVGVIGNLVHSSPSI----- 269 (704)
Q Consensus 208 ~~~~~a~~~L~~l~~~~~-~~-~~~~~----------~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~----- 269 (704)
.++..++..|..+|.... .. ...+. +..-...++..+. +.+.+.+..++..+..+....+..
T Consensus 111 ~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~ 190 (233)
T 2f31_A 111 NMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVH 190 (233)
T ss_dssp HHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 999999999988886332 23 32222 2234666777776 455677777777777776554432
Q ss_pred -HHHHHHcCCHHHHHHHhcCCChhH
Q 005282 270 -KKEVILAGALQPVIGLLSSSCSES 293 (704)
Q Consensus 270 -~~~~~~~~~l~~L~~ll~~~~~~~ 293 (704)
+..+...|..+.+-.+=...++++
T Consensus 191 lR~ef~~~Gl~~il~~l~~~~~~~L 215 (233)
T 2f31_A 191 IRSELMRLGLHQVLQELREIENEDM 215 (233)
T ss_dssp HHHHHHHTTHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHCChHHHHHHHhccCCHHH
Confidence 233344454444443333344444
No 156
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=93.70 E-value=0.067 Score=41.97 Aligned_cols=84 Identities=14% Similarity=0.130 Sum_probs=60.3
Q ss_pred EEEEEcCeEeehhHHHHhhcC-HHHHHhhcCC-CCCCCCCceEcCCCCHHHHHHHHHHHhc-CccccChh-hHHHHHHHH
Q 005282 538 VTFVVEGKQFYAHRICLLASS-DAFRAMFDGG-YKEKNAKDVEIPNIRWNVFELMMRFIYT-GNVDVSVD-IAQDLLRAA 613 (704)
Q Consensus 538 ~~~~~~~~~~~~hk~iL~~~s-~~f~~~f~~~-~~e~~~~~i~l~~~~~~~~~~~l~~~Y~-~~~~~~~~-~~~~ll~~A 613 (704)
|.+-|||..|...+..|...- ..+.+|+... .-.....++-+ |=++..|+.+|.|+-+ |++..+.+ .+..+++-|
T Consensus 3 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~eyFi-DRdp~~F~~ILnflR~~G~l~~p~~~~~~~~~~Ea 81 (100)
T 1t1d_A 3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFF-DRNRPSFDAILYFYQSGGRLRRPVNVPLDVFSEEI 81 (100)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEE-CSCSTTHHHHHHHHHTTSCCCCCTTSCHHHHHHHH
T ss_pred EEEEECCEEEEeeHHHHhcCCCccccchhccccccCCCceeEEE-cCChHHHHHHHHHHhcCCcccCCCCCCHHHHHHHH
Confidence 678899999999999996542 2344444321 11123345555 5688999999999998 88876544 478899999
Q ss_pred hhhChHhHH
Q 005282 614 DQYLLEGLK 622 (704)
Q Consensus 614 ~~~~~~~l~ 622 (704)
++|+++.+.
T Consensus 82 ~fy~i~~~~ 90 (100)
T 1t1d_A 82 KFYELGENA 90 (100)
T ss_dssp HHTTCCHHH
T ss_pred HHcCCCHHH
Confidence 999998754
No 157
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=93.51 E-value=4.5 Score=46.66 Aligned_cols=100 Identities=9% Similarity=0.123 Sum_probs=62.5
Q ss_pred CChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCC---C--HHHHHHHHHHHHHhhcCCchhhhHHhhCChH
Q 005282 289 SCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSP---D--SQLKEMSAFALGRLAQDTHNQAGIAQDGGIL 363 (704)
Q Consensus 289 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~---~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 363 (704)
.++.....++|+++.++..-.+....-.-..+++.|+.+.... + ..++...+++++..+..-.....+. ...+.
T Consensus 491 ~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L-~~vl~ 569 (1073)
T 3gjx_A 491 WSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFL-KTVVN 569 (1073)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH-HHHHH
T ss_pred CCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHH-HHHHH
Confidence 4578899999999999754332212111124566666666433 2 2345556678877765432222222 22345
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHccc
Q 005282 364 PLLKLLDSKNGSLQHNAAFALYGLAD 389 (704)
Q Consensus 364 ~L~~ll~~~~~~v~~~a~~~L~~l~~ 389 (704)
.|++.++++++.++..|+.++..++.
T Consensus 570 ~L~~~m~~~~~~vq~aA~~af~~i~~ 595 (1073)
T 3gjx_A 570 KLFEFMHETHDGVQDMACDTFIKIAQ 595 (1073)
T ss_dssp HHHHHTTCCSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 56677788899999999999999974
No 158
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=92.96 E-value=5.2 Score=40.20 Aligned_cols=156 Identities=19% Similarity=0.226 Sum_probs=102.4
Q ss_pred CChhhHHHHHHcCCcHHHHHHHhhccCCCCC---cchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCH
Q 005282 131 VKPEHQQIIVDTGALPHLVSLLKQYKNGGNS---RALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDV 207 (704)
Q Consensus 131 ~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~ 207 (704)
....+.+.+. .+|+..|+.+|..-...... ..+......++.||..+..........+.....+..|...+.+.++
T Consensus 98 ~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~ 176 (383)
T 3eg5_B 98 HPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVP 176 (383)
T ss_dssp SCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSH
T ss_pred CccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCch
Confidence 4456777777 77899999999764322211 1234778888999999885444445555566779999999999999
Q ss_pred HHHHHHHHHHHHhccCCc-hh-hHHhH----------hcCChHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhh-----
Q 005282 208 KVQRAAAGALRTLAFKND-EN-KKLIV----------ECNALPTLVLMLRS-EDASVHFEAVGVIGNLVHSSPSI----- 269 (704)
Q Consensus 208 ~~~~~a~~~L~~l~~~~~-~~-~~~~~----------~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~----- 269 (704)
.++..++..|..+|.... .+ ...+. +..-+..++..+.+ .+.+.+..++..+..+....+..
T Consensus 177 ~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~ 256 (383)
T 3eg5_B 177 NMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVH 256 (383)
T ss_dssp HHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 999999999999886442 22 22222 22346778888876 56777777777777777654432
Q ss_pred -HHHHHHcCCHHHHHHHhcC
Q 005282 270 -KKEVILAGALQPVIGLLSS 288 (704)
Q Consensus 270 -~~~~~~~~~l~~L~~ll~~ 288 (704)
+..+...|..+.+-. ++.
T Consensus 257 lR~ef~~~Gl~~il~~-lr~ 275 (383)
T 3eg5_B 257 IRSELMRLGLHQVLQE-LRE 275 (383)
T ss_dssp HHHHHHHTTHHHHHHH-HTT
T ss_pred HHHHHHHCChHHHHHH-Hhc
Confidence 233344555554444 544
No 159
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=92.63 E-value=4.2 Score=41.31 Aligned_cols=162 Identities=15% Similarity=0.108 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc
Q 005282 166 GVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR 245 (704)
Q Consensus 166 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~ 245 (704)
...+-|+..+......-|.... .++..+++++.+++..+|..|+..|..+|.+ +.... +...|+++|.
T Consensus 43 k~K~LaaQ~I~kffk~FP~l~~-----~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~k-----iaDvL~QlLq 110 (507)
T 3u0r_A 43 KEKRLAAQFIPKFFKHFPELAD-----SAINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLPR-----VADILTQLLQ 110 (507)
T ss_dssp HHHHHHHHHHHHHGGGCGGGHH-----HHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHHH-----HHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhhh-----HHHHHHHHHh
Confidence 7888899999999887787655 4678899999999999999999999999974 44333 3577999999
Q ss_pred CCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccC-CcchHHHHhcCChHHH
Q 005282 246 SEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAAD-SNSKVHIVQRGAVRPL 324 (704)
Q Consensus 246 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L 324 (704)
++++.....+-.+|..+...++. +.+..+...+..++..+|..++..|..-...- ++....-.+.-++..+
T Consensus 111 tdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~i 182 (507)
T 3u0r_A 111 TDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTES 182 (507)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHH
Confidence 99988888888888887765543 23455555555566788888888776544221 1211122223345556
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhh
Q 005282 325 IEMLQSPDSQLKEMSAFALGRLA 347 (704)
Q Consensus 325 ~~ll~~~~~~v~~~a~~~L~~l~ 347 (704)
.+.|++-..+--......|..+-
T Consensus 183 kK~L~DVT~~EF~L~m~lL~~lk 205 (507)
T 3u0r_A 183 KKVLEDVTGEEFVLFMKILSGLK 205 (507)
T ss_dssp HHHTTSCCHHHHHHHHHHHHTSG
T ss_pred HHHhccccHHHHHHHHHHHHhcc
Confidence 66665443333333445554433
No 160
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=91.43 E-value=6.7 Score=45.51 Aligned_cols=167 Identities=14% Similarity=0.101 Sum_probs=103.3
Q ss_pred cHHHHHHhcC----CCHHHHHHHHHHHHHhcc----CCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q 005282 195 IPPLVELLKF----VDVKVQRAAAGALRTLAF----KNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSS 266 (704)
Q Consensus 195 i~~L~~ll~~----~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 266 (704)
+..+..++.+ .++.++..++-+++.+.. ..+.+....+ ..+...+.+.+...+..-+..++.+|+|+-.
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v-~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~-- 469 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELL-QPLHDLLSQSSDRAKEEEIVLALKALGNAGQ-- 469 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGT-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHH-HHHHHHHHHHHhcCChHHHHHHHHHhhccCC--
Confidence 4556677764 467788778777777753 1111111111 1123334445567788888999999999963
Q ss_pred hhhHHHHHHcCCHHHHHHHhcC-------CChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhh--CCCCHHHHH
Q 005282 267 PSIKKEVILAGALQPVIGLLSS-------SCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEML--QSPDSQLKE 337 (704)
Q Consensus 267 ~~~~~~~~~~~~l~~L~~ll~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll--~~~~~~v~~ 337 (704)
+ ..++.|..++.. ....++..|+++|.+++...+.. +-+.+..+. ...++++|.
T Consensus 470 p---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~--------v~~il~~i~~n~~e~~EvRi 532 (1056)
T 1lsh_A 470 P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK--------VQEIVLPIFLNVAIKSELRI 532 (1056)
T ss_dssp G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH--------HHHHHHHHHHCTTSCHHHHH
T ss_pred h---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH--------HHHHHHHHhcCCCCChHHHH
Confidence 3 246666666642 23467888999999987533221 345667777 457889998
Q ss_pred HHHHHHHHhhcCCchhhhHHhhCChHHHHHhhc-CCChhHHHHHHHHHHHcccC
Q 005282 338 MSAFALGRLAQDTHNQAGIAQDGGILPLLKLLD-SKNGSLQHNAAFALYGLADN 390 (704)
Q Consensus 338 ~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~ 390 (704)
.|+..|.... +.. ..+..+...+. +.+..|.......|.+++.+
T Consensus 533 aA~~~Lm~t~--P~~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s 577 (1056)
T 1lsh_A 533 RSCIVFFESK--PSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRS 577 (1056)
T ss_dssp HHHHHHHHTC--CCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHC--cCH-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhc
Confidence 8888875422 211 12334454443 36778888888888888863
No 161
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=91.13 E-value=13 Score=37.23 Aligned_cols=162 Identities=18% Similarity=0.208 Sum_probs=103.1
Q ss_pred CChhhHHHHHHcCCcHHHHHHHhhccCCCCC---cchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCH
Q 005282 131 VKPEHQQIIVDTGALPHLVSLLKQYKNGGNS---RALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDV 207 (704)
Q Consensus 131 ~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~ 207 (704)
....+.+.+. .+|+..|+..|......... ..+......++.||..++.........+...+++..+...+.+.++
T Consensus 36 ~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~ 114 (386)
T 2bnx_A 36 NPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVP 114 (386)
T ss_dssp SCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSH
T ss_pred CCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCc
Confidence 4456777775 67888899988765332211 1234778889999999986444445555566778999999999999
Q ss_pred HHHHHHHHHHHHhccCCc-hh-hHHhH----------hcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChh------
Q 005282 208 KVQRAAAGALRTLAFKND-EN-KKLIV----------ECNALPTLVLMLR-SEDASVHFEAVGVIGNLVHSSPS------ 268 (704)
Q Consensus 208 ~~~~~a~~~L~~l~~~~~-~~-~~~~~----------~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~------ 268 (704)
.++..++..|..+|.... .. ...+. +..-+..++..+. +.+.+.+..++..+..+....+.
T Consensus 115 ~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~ 194 (386)
T 2bnx_A 115 NMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVH 194 (386)
T ss_dssp HHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 999999998888886332 22 22221 2234566777776 45667777777777777765443
Q ss_pred hHHHHHHcCCHHHHHHHhcCCChhH
Q 005282 269 IKKEVILAGALQPVIGLLSSSCSES 293 (704)
Q Consensus 269 ~~~~~~~~~~l~~L~~ll~~~~~~~ 293 (704)
.+..+...|..+.+-.+=...++.+
T Consensus 195 LR~Ef~~~GL~~il~~Lr~~~~~~L 219 (386)
T 2bnx_A 195 IRSELMRLGLHQVLQELREIENEDM 219 (386)
T ss_dssp HHHHHHHTTHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHCChHHHHHHHhccCChhH
Confidence 2233444555454444333344444
No 162
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=89.03 E-value=21 Score=42.20 Aligned_cols=304 Identities=11% Similarity=0.028 Sum_probs=155.4
Q ss_pred HHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHH
Q 005282 48 RAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALG 127 (704)
Q Consensus 48 ~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~ 127 (704)
..+...+..+.+.+ .+...+.+|-..|.++..+| .+...+...|...+. +..+|..|+..|.
T Consensus 11 ~~l~~~l~~~~~p~-~~~~~r~~Ae~~L~~~~~~p---------~~~~~~~~~L~~~s~--------~~~vR~~A~~~Lk 72 (1204)
T 3a6p_A 11 EQLVKAVTVMMDPN-STQRYRLEALKFCEEFKEKC---------PICVPCGLRLAEKTQ--------VAIVRHFGLQILE 72 (1204)
T ss_dssp HHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHHC---------TTHHHHHHHHTSTTS--------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CChHHHHHHHHHHHHHHhCc---------hHHHHHHHHHHccCC--------CHHHHHHHHHHHH
Confidence 33444554444432 23335666777776664433 234444444432222 4589999999999
Q ss_pred hhc-C-----ChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHH
Q 005282 128 LLA-V-----KPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVEL 201 (704)
Q Consensus 128 ~l~-~-----~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 201 (704)
+.. . .++.+..+. ..++..+....... ......++...+.++..++...-. ..+ .+.++.|+.+
T Consensus 73 ~~I~~~W~~l~~e~k~~Ir-----~~ll~~l~~~~~~~-~~~~~~vr~kla~~la~Ia~~d~p-~~W---p~ll~~L~~~ 142 (1204)
T 3a6p_A 73 HVVKFRWNGMSRLEKVYLK-----NSVMELIANGTLNI-LEEENHIKDALSRIVVEMIKREWP-QHW---PDMLIELDTL 142 (1204)
T ss_dssp HHHHHSGGGSCHHHHHHHH-----HHHHHHHHHSSCCT-TSSCHHHHHHHHHHHHHHHHHHST-TTC---TTHHHHHHHH
T ss_pred HHHHHhcccCCHHHHHHHH-----HHHHHHHHhhcccc-ccccHHHHHHHHHHHHHHHHHhCc-ccc---hHHHHHHHHH
Confidence 886 2 233333333 34555554432110 000137888889999998853211 111 4667888888
Q ss_pred hcCCCHHHHHHHHHHHHHhccC---C---chhhH-----HhHhc--CChHHHHHhhcC-------------------CCH
Q 005282 202 LKFVDVKVQRAAAGALRTLAFK---N---DENKK-----LIVEC--NALPTLVLMLRS-------------------EDA 249 (704)
Q Consensus 202 l~~~~~~~~~~a~~~L~~l~~~---~---~~~~~-----~~~~~--~~i~~L~~lL~~-------------------~~~ 249 (704)
+++ ++..+..++.+|..++.+ . ...+. .+.+. .+++.+..++.+ .+.
T Consensus 143 ~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~ 221 (1204)
T 3a6p_A 143 SKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANC 221 (1204)
T ss_dssp HHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHH
T ss_pred hcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhH
Confidence 866 566678888888888642 0 01111 11111 122333333332 123
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHcC--CHHHHHHHhcCCChhHHHHHHHHHHHHhccCCc--chHHHHhc---CChH
Q 005282 250 SVHFEAVGVIGNLVHSSPSIKKEVILAG--ALQPVIGLLSSSCSESKREAALLLGQFAAADSN--SKVHIVQR---GAVR 322 (704)
Q Consensus 250 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~--~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~---~~i~ 322 (704)
.++..++.++.+...--+ ...+.+.. .++.+..++. +++++..|+.+|..++..... .+..++.. ..+.
T Consensus 222 ~l~~~aL~~l~~~l~Wi~--~~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~ 297 (1204)
T 3a6p_A 222 RVGVAALNTLAGYIDWVS--MSHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMH 297 (1204)
T ss_dssp HHHHHHHHHHHTTTTTSC--HHHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHH
T ss_pred HHHHHHHHHHHHHHhccC--HHHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHH
Confidence 456667777765542211 12222322 5666666655 467889999999999864322 11111111 1123
Q ss_pred HHHHhhC--------CCCHHHHHHHHHHHHHhhcCCchhhhHHh-----------hCChHHHHHhhcCCChhHHHHHHHH
Q 005282 323 PLIEMLQ--------SPDSQLKEMSAFALGRLAQDTHNQAGIAQ-----------DGGILPLLKLLDSKNGSLQHNAAFA 383 (704)
Q Consensus 323 ~L~~ll~--------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-----------~~~~~~L~~ll~~~~~~v~~~a~~~ 383 (704)
.++..+. ..+.+..+..+..+..++.. ...++. .+.++.++.+..+.+..+...++..
T Consensus 298 ~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~---l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~f 374 (1204)
T 3a6p_A 298 YILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQ---LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMT 374 (1204)
T ss_dssp HHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHH---HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred HHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHH---HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHH
Confidence 3444431 12356666777777776621 111111 1334555666666666666555554
Q ss_pred HHHc
Q 005282 384 LYGL 387 (704)
Q Consensus 384 L~~l 387 (704)
-..+
T Consensus 375 W~~l 378 (1204)
T 3a6p_A 375 WGAL 378 (1204)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 163
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=87.64 E-value=15 Score=34.97 Aligned_cols=168 Identities=11% Similarity=0.119 Sum_probs=106.4
Q ss_pred hhhHHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHH
Q 005282 39 TQQDLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEV 118 (704)
Q Consensus 39 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v 118 (704)
....+..+...+.+++..-=...+.+......|+..|..++.+-++--.++... ...|-.++..... ++.+
T Consensus 16 ~~yeFs~~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~--------~~~~ 86 (315)
T 3qml_C 16 GDYEFSSDFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLNENL--------PLTL 86 (315)
T ss_dssp CCCTTHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTS--------CHHH
T ss_pred cccchHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccC--------ChhH
Confidence 334556667777777655311223344456889999999999866555555422 3444444432222 3589
Q ss_pred HHHHHHHHHhhc-CChhhHHHHHHc--CCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCc
Q 005282 119 EKECAFALGLLA-VKPEHQQIIVDT--GALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGI 195 (704)
Q Consensus 119 ~~~a~~~L~~l~-~~~~~~~~~~~~--g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i 195 (704)
++.|+++|+... .+|.....+.+. +.+..++.-|.......... ...++..-+.+|.-|...+.. + ...++
T Consensus 87 rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~-~~~l~KR~LsII~~L~~~~~~----F-~~~~m 160 (315)
T 3qml_C 87 RELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRS-SNILIKRYLSILNELPVTSED----L-PIYST 160 (315)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CC-CHHHHHHHHHHHHHSCCCSTT----C---CCH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccch-hHHHHHHHHHHHHHHhcChHh----h-hhccH
Confidence 999999999999 899988877764 34555555444421111111 126777778888888864422 2 35677
Q ss_pred HHHHHHhcCC--CHHHHHHHHHHHHHhc
Q 005282 196 PPLVELLKFV--DVKVQRAAAGALRTLA 221 (704)
Q Consensus 196 ~~L~~ll~~~--~~~~~~~a~~~L~~l~ 221 (704)
..|.+++... ++.++..++..+..+-
T Consensus 161 ~~L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 161 VVLQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 8888888877 8999998888887775
No 164
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=86.68 E-value=19 Score=41.69 Aligned_cols=170 Identities=15% Similarity=0.122 Sum_probs=108.6
Q ss_pred cHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhh----cChhhhhhhhccCCcHHHH----HHhcCCCHHHHHHHHHH
Q 005282 145 LPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAH----ENANIKTRVRVEDGIPPLV----ELLKFVDVKVQRAAAGA 216 (704)
Q Consensus 145 l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~~~~i~~L~----~ll~~~~~~~~~~a~~~ 216 (704)
+..+..++.++.... .+.++..++.+++.+.. .++.+. ...++.+. +.+...+.+-+..++.+
T Consensus 393 l~~~~~l~~~~~~~~----~~~l~~ta~La~gslV~k~c~~~~~c~-----~~~v~~i~~~l~~~~~~~~~~~~~~~Lka 463 (1056)
T 1lsh_A 393 LSYARELLNTSFIRN----RPILRKTAVLGYGSLVFRYCANTVSCP-----DELLQPLHDLLSQSSDRAKEEEIVLALKA 463 (1056)
T ss_dssp HHHHHHHHTCHHHHT----CHHHHHHHHHHHHHHHHHHHTTCSSCC-----GGGTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCccccc----CHHHHHHHHHHHHHHHHHHhccCCCCC-----HHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 345556665433100 12667777777777653 222211 12244444 44456778888999999
Q ss_pred HHHhccCCchhhHHhHhcCChHHHHHhhc-------CCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHh--c
Q 005282 217 LRTLAFKNDENKKLIVECNALPTLVLMLR-------SEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLL--S 287 (704)
Q Consensus 217 L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll--~ 287 (704)
|+|+.. + ..++.|.+++. +....++..|+++|..++...+... -+.++.+. .
T Consensus 464 LGN~g~--p---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v--------~~il~~i~~n~ 524 (1056)
T 1lsh_A 464 LGNAGQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV--------QEIVLPIFLNV 524 (1056)
T ss_dssp HHHHTC--G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH--------HHHHHHHHHCT
T ss_pred hhccCC--h---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHH--------HHHHHHHhcCC
Confidence 999984 2 24667777764 1245788999999999986544322 34566677 4
Q ss_pred CCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCch
Q 005282 288 SSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQS-PDSQLKEMSAFALGRLAQDTHN 352 (704)
Q Consensus 288 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~ 352 (704)
..++++|..|+..|... ++.. ..+..+...+.. ++.+|...+...|.+++.....
T Consensus 525 ~e~~EvRiaA~~~Lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 525 AIKSELRIRSCIVFFES---KPSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp TSCHHHHHHHHHHHHHT---CCCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred CCChHHHHHHHHHHHHH---CcCH-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence 56778888888877643 3332 236667777765 7889999999999999976543
No 165
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=86.44 E-value=13 Score=37.33 Aligned_cols=142 Identities=15% Similarity=0.232 Sum_probs=91.4
Q ss_pred cCChHHHHHhhc-----------CCCHHHHHHHHHHHHHHhcCChhhHHHHH-HcCCHHHHHHHhcCCChhHHHHHHHHH
Q 005282 234 CNALPTLVLMLR-----------SEDASVHFEAVGVIGNLVHSSPSIKKEVI-LAGALQPVIGLLSSSCSESKREAALLL 301 (704)
Q Consensus 234 ~~~i~~L~~lL~-----------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~ll~~~~~~~~~~a~~~L 301 (704)
.+|+..|+.+|. ..+......++.||..+... ......+. ....+..+...+.+..+.++..++..|
T Consensus 108 ~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL 186 (383)
T 3eg5_B 108 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL 186 (383)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSS-HHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcc-hhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 456677777664 12457778899999988754 43344444 467889999999999999999999999
Q ss_pred HHHhccCC-cc-hHHHH----------hcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCchh-------hhHHhhCC
Q 005282 302 GQFAAADS-NS-KVHIV----------QRGAVRPLIEMLQS-PDSQLKEMSAFALGRLAQDTHNQ-------AGIAQDGG 361 (704)
Q Consensus 302 ~~l~~~~~-~~-~~~~~----------~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~-------~~~~~~~~ 361 (704)
..+|.... .+ ...++ +..-+..++..+.+ .+.+.+..+...+..+...++.. ..+... |
T Consensus 187 ~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~-G 265 (383)
T 3eg5_B 187 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRL-G 265 (383)
T ss_dssp HHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHT-T
T ss_pred HHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-C
Confidence 98886443 33 33332 23567888888886 56677777666666666655432 223344 4
Q ss_pred hHHHHHhhcC-CChhHH
Q 005282 362 ILPLLKLLDS-KNGSLQ 377 (704)
Q Consensus 362 ~~~L~~ll~~-~~~~v~ 377 (704)
+..++.-++. .++.+.
T Consensus 266 l~~il~~lr~~~~~~L~ 282 (383)
T 3eg5_B 266 LHQVLQELREIENEDMK 282 (383)
T ss_dssp HHHHHHHHTTSCCHHHH
T ss_pred hHHHHHHHhcCCChhHH
Confidence 4455544544 454443
No 166
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=85.14 E-value=23 Score=32.54 Aligned_cols=145 Identities=17% Similarity=0.220 Sum_probs=84.7
Q ss_pred cCCcHHHHHHhcC-----------CCHHHHHHHHHHHHHhccCCchhhHHhH-hcCChHHHHHhhcCCCHHHHHHHHHHH
Q 005282 192 EDGIPPLVELLKF-----------VDVKVQRAAAGALRTLAFKNDENKKLIV-ECNALPTLVLMLRSEDASVHFEAVGVI 259 (704)
Q Consensus 192 ~~~i~~L~~ll~~-----------~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~L~~lL~~~~~~v~~~a~~~L 259 (704)
.+|+..|+.+|.. .+...+..++.||..+.. +......+. ..+++..+...|.++++.++..++..|
T Consensus 42 ~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL 120 (233)
T 2f31_A 42 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL 120 (233)
T ss_dssp HHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS-SHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC-ChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 4566666666541 145678889999999985 555555554 566889999999999999999999999
Q ss_pred HHHhcCCh-hh-HHHHH----------HcCCHHHHHHHhcCC-ChhHHHHHHHHHHHHhccCCcchH-------HHHhcC
Q 005282 260 GNLVHSSP-SI-KKEVI----------LAGALQPVIGLLSSS-CSESKREAALLLGQFAAADSNSKV-------HIVQRG 319 (704)
Q Consensus 260 ~~l~~~~~-~~-~~~~~----------~~~~l~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~-------~~~~~~ 319 (704)
.-+|..++ .. ...+. +..-...++..+.+. +.+.+..+...+-.+.. .++... .+...|
T Consensus 121 ~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~-~~~dl~~R~~lR~ef~~~G 199 (233)
T 2f31_A 121 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALIT-PAEELDFRVHIRSELMRLG 199 (233)
T ss_dssp HHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHT-TCCCHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCC
Confidence 88886543 12 22221 122455677767643 33444444444444443 333321 233445
Q ss_pred ChHHHHHhhCCCCHHHHHH
Q 005282 320 AVRPLIEMLQSPDSQLKEM 338 (704)
Q Consensus 320 ~i~~L~~ll~~~~~~v~~~ 338 (704)
+.+.+-++=...++++..+
T Consensus 200 l~~il~~l~~~~~~~L~~Q 218 (233)
T 2f31_A 200 LHQVLQELREIENEDMKVQ 218 (233)
T ss_dssp HHHHHHHHHHCCCHHHHHH
T ss_pred hHHHHHHHhccCCHHHHHH
Confidence 5544444433345544433
No 167
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=84.68 E-value=5.2 Score=37.96 Aligned_cols=145 Identities=11% Similarity=0.057 Sum_probs=92.1
Q ss_pred HHHHHhhcCC------CHHHHHHHHHHHHHHhcCChhhHHHHHH--cCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCC
Q 005282 238 PTLVLMLRSE------DASVHFEAVGVIGNLVHSSPSIKKEVIL--AGALQPVIGLLSSSCSESKREAALLLGQFAAADS 309 (704)
Q Consensus 238 ~~L~~lL~~~------~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 309 (704)
..+..++.++ +......++..|..++.+ -..-..++. ...+..|+ +.....+.+++.|+++|+...+.+|
T Consensus 25 ~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHD-i~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP 102 (315)
T 3qml_C 25 KEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHD-YKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNP 102 (315)
T ss_dssp HHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTS-HHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhh-HHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCH
Confidence 3445555554 445667888888888754 333333443 23344444 2234556789999999999988888
Q ss_pred cchHHHHhc--CChHHHHHhhC----C---CCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCC--ChhHHH
Q 005282 310 NSKVHIVQR--GAVRPLIEMLQ----S---PDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSK--NGSLQH 378 (704)
Q Consensus 310 ~~~~~~~~~--~~i~~L~~ll~----~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~--~~~v~~ 378 (704)
.....+.+. ..+..++.-|. . ....+++.-+.+|..|...+.. + ...++..|.+++... ++.++.
T Consensus 103 ~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~---F-~~~~m~~L~~ly~~~~~d~~~k~ 178 (315)
T 3qml_C 103 PVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED---L-PIYSTVVLQNVYERNNKDKQLQI 178 (315)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT---C---CCHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh---h-hhccHHHHHHHHccCCCCHHHHH
Confidence 877766654 44444443332 2 2446777788888888887621 2 245667777777666 889999
Q ss_pred HHHHHHHHcc
Q 005282 379 NAAFALYGLA 388 (704)
Q Consensus 379 ~a~~~L~~l~ 388 (704)
.++..+..+-
T Consensus 179 Kvl~li~d~f 188 (315)
T 3qml_C 179 KVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 8888877664
No 168
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.36 E-value=2.8 Score=33.09 Aligned_cols=37 Identities=16% Similarity=0.101 Sum_probs=32.2
Q ss_pred CccccChhhHHHHHHHHhhhChHhHHHHHHHHHHhhC
Q 005282 597 GNVDVSVDIAQDLLRAADQYLLEGLKRLCEYSIAQII 633 (704)
Q Consensus 597 ~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~ 633 (704)
+.-.++++|...++.+|+.|+++.|.+.|..|+.++.
T Consensus 4 ~~~~L~~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF 40 (105)
T 2eqx_A 4 GSSGVQVGNCLQVMWLADRHSDPELYTAAKHCAKTHL 40 (105)
T ss_dssp CCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred hhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3445789999999999999999999999999997644
No 169
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=77.31 E-value=28 Score=34.85 Aligned_cols=131 Identities=15% Similarity=0.217 Sum_probs=82.2
Q ss_pred CHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCC-cc-hHHHH---------
Q 005282 248 DASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADS-NS-KVHIV--------- 316 (704)
Q Consensus 248 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~-~~~~~--------- 316 (704)
+......++.||..+..........+...+++..+...+.++++.++..++..|..+|.... .. ...++
T Consensus 71 d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~ 150 (386)
T 2bnx_A 71 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM 150 (386)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHh
Confidence 35677888899988875533333333446778888888988889999999988888886443 23 33222
Q ss_pred -hcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCch-------hhhHHhhCChHHHHHhhc-CCChhHHHH
Q 005282 317 -QRGAVRPLIEMLQS-PDSQLKEMSAFALGRLAQDTHN-------QAGIAQDGGILPLLKLLD-SKNGSLQHN 379 (704)
Q Consensus 317 -~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~-------~~~~~~~~~~~~L~~ll~-~~~~~v~~~ 379 (704)
+..-+..++..+.+ .+.+.+..+...+..+...+++ +..+... |+..++.-++ ..++.+...
T Consensus 151 ~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~-GL~~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 151 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRL-GLHQVLQELREIENEDMKVQ 222 (386)
T ss_dssp HTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHT-THHHHHHHHTTCCCHHHHHH
T ss_pred CchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC-ChHHHHHHHhccCChhHHHH
Confidence 23466778888874 5566776666666666665543 2234444 4445555444 355554433
No 170
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=75.15 E-value=3.5 Score=32.60 Aligned_cols=33 Identities=12% Similarity=0.357 Sum_probs=30.2
Q ss_pred hCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005282 632 IISVENIMLMYELSEAYNATTLKQSCILFILEK 664 (704)
Q Consensus 632 ~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~ 664 (704)
.++.+|+..++..|..|+++.|.+.|.+|+.++
T Consensus 76 ~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~ 108 (109)
T 2vkp_A 76 DLEADTVLATLYAAKKYIVPALAKACVNFLETS 108 (109)
T ss_dssp CCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh
Confidence 356789999999999999999999999999876
No 171
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=67.35 E-value=80 Score=29.34 Aligned_cols=197 Identities=11% Similarity=0.101 Sum_probs=114.7
Q ss_pred HHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhc--ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHH
Q 005282 44 VQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAK--NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKE 121 (704)
Q Consensus 44 ~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~--~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~ 121 (704)
...-..+++.|........ ..+...+.-...+.. +|..-..+ ++.++++..+.+ .++|..
T Consensus 11 ~~~~~~v~~lln~A~~~~~---~~kl~~L~qa~el~~~~dp~ll~~~-----l~~il~~~~~~~----------~~vrk~ 72 (257)
T 3gs3_A 11 ATARAKVVDWCNELVIASP---STKCELLAKVQETVLGSCAELAEEF-----LESVLSLAHDSN----------MEVRKQ 72 (257)
T ss_dssp HHHHHHHHHHHHHHTTCCH---HHHHHHHHHHHHHHTTTTGGGHHHH-----HHHHHGGGGCSC----------HHHHHH
T ss_pred ccHHHHHHHHHHHhhhcCc---HHHHHHHHHHHHHHHccCHhHHHHH-----HHHHHHhccCCh----------HHHHHH
Confidence 3344556666666554222 245666666666544 45554554 788888766644 499999
Q ss_pred HHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhh-------cChh-----hhhh
Q 005282 122 CAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAH-------ENAN-----IKTR 188 (704)
Q Consensus 122 a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~-------~~~~-----~~~~ 188 (704)
.+..+...+ ..++.... +++.|..++++.+ +.+...+..+..++.. .++. ...+
T Consensus 73 ~~~Fi~e~~~~k~~l~~~-----~l~~L~~Ll~d~d--------~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W 139 (257)
T 3gs3_A 73 VVAFVEQVCKVKVELLPH-----VINVVSMLLRDNS--------AQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAW 139 (257)
T ss_dssp HHHHHHHHHHHCGGGHHH-----HHHHHHHHTTCSC--------HHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHcCCC--------HHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHH
Confidence 999999999 56554433 3467777877533 3788888877776642 1111 0111
Q ss_pred hhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhcc----CCch--------------------hhHHhH--hcCChHHHHH
Q 005282 189 VRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAF----KNDE--------------------NKKLIV--ECNALPTLVL 242 (704)
Q Consensus 189 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~----~~~~--------------------~~~~~~--~~~~i~~L~~ 242 (704)
-.-...=..++.++.+.+..++..++..+..+.. ..+. +...+. ..+.+..|+.
T Consensus 140 ~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~qT~~~~~~~~~~~d~SL~~Vp~~Hp~l~~~~Le~Ea~~lL~~LL~ 219 (257)
T 3gs3_A 140 NILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQSFADEDSLKRDGDFSLADVPDHCTLFRREKLQEEGNNILDILLQ 219 (257)
T ss_dssp HHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHTSCCCTTSCCCTTCCCGGGSCSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhhcCCCcccCCCCCCCCHHHCCCCCCcCCHHHHHHHHHHHHHHHHH
Confidence 1111222446667778899999999988877641 1111 011111 1234566666
Q ss_pred hhcCC--CHHHHHHHHHHHHHHhcCChhhHH
Q 005282 243 MLRSE--DASVHFEAVGVIGNLVHSSPSIKK 271 (704)
Q Consensus 243 lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~ 271 (704)
++.++ +......++.+|+.++...|....
T Consensus 220 ~~~~~~iss~~l~a~lnsL~~Iak~RP~~~~ 250 (257)
T 3gs3_A 220 FHGTTHISSVNLIACTSSLCTIAKMRPIFMG 250 (257)
T ss_dssp HHTCTTCCHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHcCCccchHHHHHHHHHHHHHHHhCcHHHH
Confidence 66554 334455677777777766555433
No 172
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=65.48 E-value=1.1e+02 Score=30.32 Aligned_cols=68 Identities=15% Similarity=0.226 Sum_probs=54.2
Q ss_pred ccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 005282 191 VEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLV 263 (704)
Q Consensus 191 ~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 263 (704)
-..+++.++.+-.+.+.++|+..+..|...+....+.. ..+++.|..++++.++.|.+.++.+..++-
T Consensus 61 l~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~-----~~~l~~L~~LL~d~d~~V~K~~I~~~tslY 128 (386)
T 3o2t_A 61 LDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL-----LKLIANLNMLLRDENVNVVKKAILTMTQLY 128 (386)
T ss_dssp GGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 35778889999889999999999999999986333222 234778888898899999999988888775
No 173
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=63.05 E-value=53 Score=32.65 Aligned_cols=129 Identities=15% Similarity=0.181 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHhcC-ChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhh
Q 005282 250 SVHFEAVGVIGNLVHS-SPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEML 328 (704)
Q Consensus 250 ~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll 328 (704)
..+...+.-+..+..+ ++. .-.++++.++.+-.+.+.++++.++..|...+....+.. ..+++.|..++
T Consensus 40 ~~Kl~~L~q~~EL~l~~dps-----Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~-----~~~l~~L~~LL 109 (386)
T 3o2t_A 40 DSKITVLKQVQELIINKDPT-----LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL-----LKLIANLNMLL 109 (386)
T ss_dssp THHHHHHHHHHHHHHTTCGG-----GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHH-----HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 3455666666665432 232 224688899999989999999999999998886444432 23578888889
Q ss_pred CCCCHHHHHHHHHHHHHhh--------cCCch---hhhHHhh--CChHHHHHhhcCCChhHHHHHHHHHHHcc
Q 005282 329 QSPDSQLKEMSAFALGRLA--------QDTHN---QAGIAQD--GGILPLLKLLDSKNGSLQHNAAFALYGLA 388 (704)
Q Consensus 329 ~~~~~~v~~~a~~~L~~l~--------~~~~~---~~~~~~~--~~~~~L~~ll~~~~~~v~~~a~~~L~~l~ 388 (704)
.+.++.+.+.+..+..++- .++.. ....++. ..-..++.++.+.+..++-.++.++..+.
T Consensus 110 ~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 110 RDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 8888888887777666653 22221 1222222 23344777888899999999999887764
No 174
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=60.16 E-value=1.1e+02 Score=28.42 Aligned_cols=129 Identities=16% Similarity=0.152 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHhcC-ChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhh
Q 005282 250 SVHFEAVGVIGNLVHS-SPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEML 328 (704)
Q Consensus 250 ~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll 328 (704)
..+...+.-...+.-+ ++... ..+++.++.+..+.+.++++..+..+...+...++.. ..+++.|..++
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll-----~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~-----~~~l~~L~~Ll 99 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELA-----EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELL-----PHVINVVSMLL 99 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGH-----HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHccCHhHH-----HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 4666666666665543 23221 3456677777777888899999999988875444332 23578888888
Q ss_pred CCCCHHHHHHHHHHHHHhh--------cCCch---hhhHHhh--CChHHHHHhhcCCChhHHHHHHHHHHHcc
Q 005282 329 QSPDSQLKEMSAFALGRLA--------QDTHN---QAGIAQD--GGILPLLKLLDSKNGSLQHNAAFALYGLA 388 (704)
Q Consensus 329 ~~~~~~v~~~a~~~L~~l~--------~~~~~---~~~~~~~--~~~~~L~~ll~~~~~~v~~~a~~~L~~l~ 388 (704)
.+.++.+.+.+..+..++- .++.. ....++. ..-..+++++.+.+..++-.+...+..+.
T Consensus 100 ~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 100 RDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 8888888887777666553 22221 2233322 23344778888899999999999887764
No 175
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=57.82 E-value=12 Score=39.25 Aligned_cols=86 Identities=12% Similarity=0.117 Sum_probs=59.5
Q ss_pred ccEEEEEcCeEeehhHHHHhhcCH-HHHHhhcC-CCCCCCCCceEcCCCCHHHHHHHHHHHhc-CccccChh-hHHHHHH
Q 005282 536 SDVTFVVEGKQFYAHRICLLASSD-AFRAMFDG-GYKEKNAKDVEIPNIRWNVFELMMRFIYT-GNVDVSVD-IAQDLLR 611 (704)
Q Consensus 536 ~d~~~~~~~~~~~~hk~iL~~~s~-~f~~~f~~-~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~-~~~~~~~~-~~~~ll~ 611 (704)
.-|.+-|||..|...+..|...-+ .+-.++.. .+-....++.-+ |=++..|+.+|.|+.+ |++..+.+ ....+.+
T Consensus 52 ~~v~lNVgG~~f~t~~~tL~~~p~s~l~~~~~~~~~~~~~~~~~f~-DR~~~~F~~IL~~~r~~g~l~~p~~~~~~~~~~ 130 (514)
T 2r9r_B 52 ERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFF-DRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSE 130 (514)
T ss_dssp CEEEEEETTEEEEEEHHHHTTSTTSTTTCHHHHGGGEETTTTEEEE-CSCHHHHHHHHHHHHHTSCCCCCTTSCHHHHHH
T ss_pred CEEEEEeCCEEEEecHHHHhcCCCCcccccccCCcccCCCCCCEEE-cCChHHHHHHHHHHhcCCccccCCcccHHHHHH
Confidence 357788999999999999974321 11222221 111223345555 5689999999999999 99876655 4567889
Q ss_pred HHhhhChHhHH
Q 005282 612 AADQYLLEGLK 622 (704)
Q Consensus 612 ~A~~~~~~~l~ 622 (704)
=|++|+++++.
T Consensus 131 E~~f~~i~~~~ 141 (514)
T 2r9r_B 131 EIRFYELGEEA 141 (514)
T ss_dssp HHHHTTCCHHH
T ss_pred HHHhcCCCHHH
Confidence 99999998754
No 176
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=57.64 E-value=8.4 Score=31.41 Aligned_cols=32 Identities=19% Similarity=0.271 Sum_probs=29.0
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005282 633 ISVENIMLMYELSEAYNATTLKQSCILFILEK 664 (704)
Q Consensus 633 ~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~ 664 (704)
++.+++..++..|..|+++.|.+.|.+|+.+|
T Consensus 95 ~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~ 126 (127)
T 1r29_A 95 LREGNIMAVMATAMYLQMEHVVDTCRKFIKAS 126 (127)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 56789999999999999999999999998753
No 177
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=56.85 E-value=47 Score=28.42 Aligned_cols=71 Identities=7% Similarity=-0.004 Sum_probs=54.4
Q ss_pred CCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC-chhhHHhHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHHh
Q 005282 193 DGIPPLVELLKFVDVKVQRAAAGALRTLAFKN-DENKKLIVECNALPTLVLMLRS-EDASVHFEAVGVIGNLV 263 (704)
Q Consensus 193 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~ 263 (704)
.++..|.+-|.+.++.++..|+..|-.+..+. +.....+....++..+++++.. .++.|+..++..+..-+
T Consensus 52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 34567888888999999999999999888643 4455566666778888888874 67889888888776655
No 178
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=56.52 E-value=22 Score=33.14 Aligned_cols=107 Identities=7% Similarity=-0.049 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHHhhcCChh-hHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCC
Q 005282 116 HEVEKECAFALGLLAVKPE-HQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDG 194 (704)
Q Consensus 116 ~~v~~~a~~~L~~l~~~~~-~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 194 (704)
+..+.-++++++|+-.++. .+..+........++..+.+.-.+....+...++..++..+.|++......+. +...
T Consensus 104 ~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~e~ 180 (253)
T 3gae_A 104 ITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLEL 180 (253)
T ss_dssp HHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CTTH
T ss_pred hhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hHHH
Confidence 4799999999999998877 46555543334455554432211110011237888888899999842221111 1223
Q ss_pred cHHHHHHhcC---------CCHHHHHHHHHHHHHhccCCc
Q 005282 195 IPPLVELLKF---------VDVKVQRAAAGALRTLAFKND 225 (704)
Q Consensus 195 i~~L~~ll~~---------~~~~~~~~a~~~L~~l~~~~~ 225 (704)
...++..+.. .+++....++.+++++....+
T Consensus 181 ~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~ 220 (253)
T 3gae_A 181 LPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 220 (253)
T ss_dssp HHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcH
Confidence 3455555542 378899999999999986433
No 179
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=55.68 E-value=62 Score=27.10 Aligned_cols=72 Identities=11% Similarity=0.020 Sum_probs=56.9
Q ss_pred CCcHHHHHHhcCCCHHHHHHHHHHHHHhccC-CchhhHHhHhcCChHHHHHhhcC------CCHHHHHHHHHHHHHHhc
Q 005282 193 DGIPPLVELLKFVDVKVQRAAAGALRTLAFK-NDENKKLIVECNALPTLVLMLRS------EDASVHFEAVGVIGNLVH 264 (704)
Q Consensus 193 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~ 264 (704)
.++..|.+-+++.++.++..|+..|-.+..+ .+.....+....++..|++++.. .++.|+..++..+..-+.
T Consensus 38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 3466788888899999999999999999864 34556667777788889988863 478999999888877663
No 180
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=54.45 E-value=5.6 Score=32.99 Aligned_cols=37 Identities=8% Similarity=0.001 Sum_probs=29.0
Q ss_pred hCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 005282 632 IISVENIMLMYELSEAYNATTLKQSCILFILEKFDKM 668 (704)
Q Consensus 632 ~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~ 668 (704)
.++.+|+..++..|..|+++.|.+.|.+|+.+++..-
T Consensus 86 ~i~~~~v~~ll~~A~~l~i~~L~~~C~~~l~~~l~~~ 122 (135)
T 2yy9_A 86 ALTSGNRDQVLLAAKELRVPEAVELCQSFQPQTSVGQ 122 (135)
T ss_dssp CCCTTTHHHHHHHHHHTTCHHHHHHHHHCCC------
T ss_pred CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccCC
Confidence 3677899999999999999999999999998887654
No 181
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=54.08 E-value=16 Score=29.43 Aligned_cols=32 Identities=13% Similarity=0.216 Sum_probs=29.1
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005282 633 ISVENIMLMYELSEAYNATTLKQSCILFILEK 664 (704)
Q Consensus 633 ~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~ 664 (704)
++.+|+..++..|..|+.+.|.+.|.+|+.+.
T Consensus 89 ~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~ 120 (121)
T 1buo_A 89 AKAEDLDDLLYAAEILEIEYLEEQCLKMLETI 120 (121)
T ss_dssp CCGGGHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHh
Confidence 56789999999999999999999999998763
No 182
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=54.07 E-value=13 Score=29.83 Aligned_cols=31 Identities=13% Similarity=0.160 Sum_probs=28.0
Q ss_pred hCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005282 632 IISVENIMLMYELSEAYNATTLKQSCILFIL 662 (704)
Q Consensus 632 ~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~ 662 (704)
.++.+|+..++..|..|+++.|.+.|.+|+.
T Consensus 87 ~i~~~~~~~ll~~A~~l~i~~L~~~C~~~l~ 117 (119)
T 2q81_A 87 SLSPENVDDVLAVATFLQMQDIITACHALKS 117 (119)
T ss_dssp CCCTTTHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3677899999999999999999999999874
No 183
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=53.85 E-value=60 Score=28.02 Aligned_cols=71 Identities=8% Similarity=0.008 Sum_probs=56.1
Q ss_pred CcHHHHHHhcCCCHHHHHHHHHHHHHhccCC-chhhHHhHhcCChHHHHHhhcC------CCHHHHHHHHHHHHHHhc
Q 005282 194 GIPPLVELLKFVDVKVQRAAAGALRTLAFKN-DENKKLIVECNALPTLVLMLRS------EDASVHFEAVGVIGNLVH 264 (704)
Q Consensus 194 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~ 264 (704)
++..|.+-+.+.++.++..|+..|-.+..+. ......+....++..|++++.. .+..|+..++..+..-+.
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4567888889999999999999999998743 4455567777788889998862 467899999988877664
No 184
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=53.32 E-value=57 Score=27.03 Aligned_cols=71 Identities=10% Similarity=0.017 Sum_probs=53.8
Q ss_pred CCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC-chhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 005282 193 DGIPPLVELLKFVDVKVQRAAAGALRTLAFKN-DENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLV 263 (704)
Q Consensus 193 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 263 (704)
.++..|.+-+.+.++.++..|+..|-.+..+. +.....+....++..+.+++...++.|+..++..+..-+
T Consensus 42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 34667788888999999999999888887633 334445555667777888887788899999888887665
No 185
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=53.30 E-value=7.7 Score=31.25 Aligned_cols=32 Identities=9% Similarity=0.074 Sum_probs=27.3
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005282 633 ISVENIMLMYELSEAYNATTLKQSCILFILEK 664 (704)
Q Consensus 633 ~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~ 664 (704)
++.+|+..++..|..|+.+.|.+.|.+|+.++
T Consensus 86 ~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~ 117 (119)
T 3b84_A 86 LTSGNRDQVLLAARELRVPEAVELCQSFKPKT 117 (119)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHCC---
T ss_pred cCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHc
Confidence 56789999999999999999999999998765
No 186
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=53.24 E-value=23 Score=30.32 Aligned_cols=71 Identities=13% Similarity=0.174 Sum_probs=54.7
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCC-hhhHHHHHHcCCHHHHHHHhcC-CChhHHHHHHHHHHHHhc
Q 005282 236 ALPTLVLMLRSEDASVHFEAVGVIGNLVHSS-PSIKKEVILAGALQPVIGLLSS-SCSESKREAALLLGQFAA 306 (704)
Q Consensus 236 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~ll~~-~~~~~~~~a~~~L~~l~~ 306 (704)
++..|.+-|.+.++.++..|+.+|-.+..+. +.....+....++..|+.++.. .++.++..+...+...+.
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 3567888888999999999999999988764 3455556667788888888865 567888888888877764
No 187
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=52.67 E-value=25 Score=29.61 Aligned_cols=72 Identities=18% Similarity=0.121 Sum_probs=56.8
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCC-hhhHHHHHHcCCHHHHHHHhcC------CChhHHHHHHHHHHHHhcc
Q 005282 236 ALPTLVLMLRSEDASVHFEAVGVIGNLVHSS-PSIKKEVILAGALQPVIGLLSS------SCSESKREAALLLGQFAAA 307 (704)
Q Consensus 236 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~ll~~------~~~~~~~~a~~~L~~l~~~ 307 (704)
++..|.+-|++.++.++..|+..|-.+..+. +.....+....++..|+.++.. .+..++..++..+...+..
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW 117 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3567788888999999999999999998764 4455666677889999998864 3678888888888877643
No 188
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=51.52 E-value=13 Score=32.15 Aligned_cols=34 Identities=26% Similarity=0.159 Sum_probs=30.4
Q ss_pred cChhhHHHHHHHHhhhChHhHHHHHHHHHHhhCC
Q 005282 601 VSVDIAQDLLRAADQYLLEGLKRLCEYSIAQIIS 634 (704)
Q Consensus 601 ~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~ 634 (704)
++.+++..++..|+.|+.+.|++.|.+++.++..
T Consensus 132 l~~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~~ 165 (172)
T 3htm_A 132 LSVENAAEILILADLHSADQLKTQAVDFINYHAT 165 (172)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 6778999999999999999999999999987553
No 189
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=50.90 E-value=22 Score=29.64 Aligned_cols=71 Identities=15% Similarity=0.215 Sum_probs=54.4
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh-hhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q 005282 236 ALPTLVLMLRSEDASVHFEAVGVIGNLVHSSP-SIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAA 306 (704)
Q Consensus 236 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~ 306 (704)
++..|.+-|.+.++.++..|+..|-.+..+.. .....+....++..+..++...++.++..+...+...+.
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 35667788888999999999999988886643 334455556678888888877788898888888877763
No 190
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=50.46 E-value=16 Score=29.04 Aligned_cols=30 Identities=7% Similarity=0.142 Sum_probs=27.6
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005282 633 ISVENIMLMYELSEAYNATTLKQSCILFIL 662 (704)
Q Consensus 633 ~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~ 662 (704)
++.+|+..++..|..|+++.|.+.|.+|+.
T Consensus 86 ~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~ 115 (116)
T 2vpk_A 86 LDSWNVKEIHQAADYLKVEEVVTKCKIKME 115 (116)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 567899999999999999999999999874
No 191
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=48.11 E-value=21 Score=28.58 Aligned_cols=29 Identities=10% Similarity=0.242 Sum_probs=26.9
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 005282 633 ISVENIMLMYELSEAYNATTLKQSCILFI 661 (704)
Q Consensus 633 ~~~~~~~~~~~~a~~~~~~~L~~~~~~~i 661 (704)
++.+++..++..|..|+++.|.+.|.+|+
T Consensus 91 ~~~~~~~~ll~~A~~~~i~~L~~~C~~~L 119 (120)
T 2if5_A 91 VSTANVGDILSAARLLEIPAVSHVCADLL 119 (120)
T ss_dssp CCGGGHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 56789999999999999999999999986
No 192
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=47.76 E-value=91 Score=26.11 Aligned_cols=72 Identities=10% Similarity=-0.030 Sum_probs=55.8
Q ss_pred CCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC-chhhHHhHhcCChHHHHHhhcC------CCHHHHHHHHHHHHHHhc
Q 005282 193 DGIPPLVELLKFVDVKVQRAAAGALRTLAFKN-DENKKLIVECNALPTLVLMLRS------EDASVHFEAVGVIGNLVH 264 (704)
Q Consensus 193 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~ 264 (704)
.++..|.+-+.+.++.++..|+..|-.+..+. +.....+....++..|++++.. .++.|+..++..+..-+.
T Consensus 48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 34667888888999999999999999887633 3445566677788889988863 578899999988877764
No 193
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=47.57 E-value=1.1e+02 Score=34.91 Aligned_cols=218 Identities=12% Similarity=0.020 Sum_probs=110.3
Q ss_pred CHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhC----CCCHHHHHHHHHHHH--HhhcCCc
Q 005282 278 ALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQ----SPDSQLKEMSAFALG--RLAQDTH 351 (704)
Q Consensus 278 ~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~----~~~~~v~~~a~~~L~--~l~~~~~ 351 (704)
.+.-|+++-.+.-.+++..|-.+|.......+..... +++.+++.|+ ..+.+-.+.|+.+|. .+...-.
T Consensus 134 ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~-----iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~ 208 (997)
T 1vsy_5 134 LLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGV-----VINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLM 208 (997)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHH-----HHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGG
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHH-----HHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHh
Confidence 3556677777888999999999999887655444433 3566666663 345555556666554 1110000
Q ss_pred hhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHccc---CCchhhHHHhhCCcccccccccccccchHHHHHHH-HHH
Q 005282 352 NQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD---NEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTL-KRL 427 (704)
Q Consensus 352 ~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~---~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~-~~~ 427 (704)
+..-.-...++.|+++.+...++++.-+-.+...+.. .|+... +.....+..+......+........... .+.
T Consensus 209 -~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~-~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r 286 (997)
T 1vsy_5 209 -TDYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVC-VISDQAFLPLAPPDGTINLQVEAVKLAKKKKR 286 (997)
T ss_dssp -GCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCC-CCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHH
T ss_pred -cChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHH-HHHHHHHhccCCCcHHHHHHHHHHHHHHHHHH
Confidence 0001111234566777777778777766655444432 222221 1111111111100000000000000000 000
Q ss_pred --HHHhhcchhHHHHHHH-hhcc--HHHHHHHHHHHHhccCCCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHH
Q 005282 428 --EEKVHGRVLNHLLYLL-RVAD--RAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKL 502 (704)
Q Consensus 428 --~~~~~~~~~~~L~~ll-~~~~--~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L 502 (704)
.......+...++.++ .... ......++..|.++....+ ......++..+++.+.+++|.+|..|..++..+
T Consensus 287 ~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d---~~~~~~~v~~~~~~l~~dhp~~R~~a~~~l~~i 363 (997)
T 1vsy_5 287 EYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLE---SKPDKRAVFSIISQISTKHPEIIHLVVKSLLST 363 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSS---CCCCHHHHHHHHGGGGGCCHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCC---CCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Confidence 0000123344445555 1233 4556666777666643221 223456788899999999999999999888666
Q ss_pred hhh
Q 005282 503 ATK 505 (704)
Q Consensus 503 ~~~ 505 (704)
...
T Consensus 364 l~~ 366 (997)
T 1vsy_5 364 CNK 366 (997)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 194
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=46.49 E-value=27 Score=30.18 Aligned_cols=71 Identities=18% Similarity=0.170 Sum_probs=55.9
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh-hhHHHHHHcCCHHHHHHHhcC------CChhHHHHHHHHHHHHhcc
Q 005282 237 LPTLVLMLRSEDASVHFEAVGVIGNLVHSSP-SIKKEVILAGALQPVIGLLSS------SCSESKREAALLLGQFAAA 307 (704)
Q Consensus 237 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~ll~~------~~~~~~~~a~~~L~~l~~~ 307 (704)
+..|.+-+++.++.++..|+.+|-.+..+.. .....+....++..|+.++.. .+..++..++..+...+..
T Consensus 52 ~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 52 VRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 5678888889999999999999999987753 455566677888999998863 3567888888888887643
No 195
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=44.35 E-value=42 Score=31.69 Aligned_cols=81 Identities=10% Similarity=0.073 Sum_probs=52.1
Q ss_pred ccChhhHHHHHHHHhhhChHhHHHHHHHHHHhhCC------------hhhHHHHHHHHHHcC---CHHHHHHHHHHHHHH
Q 005282 600 DVSVDIAQDLLRAADQYLLEGLKRLCEYSIAQIIS------------VENIMLMYELSEAYN---ATTLKQSCILFILEK 664 (704)
Q Consensus 600 ~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~------------~~~~~~~~~~a~~~~---~~~L~~~~~~~i~~~ 664 (704)
.++.+++..++..|+.|+++.|.+.|..++.++.. .+....++. ....+ -..+.+.+.+|+..+
T Consensus 138 ~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L~~~~l~~lL~-~d~L~v~sE~~vf~av~~W~~~~ 216 (279)
T 3i3n_A 138 KLHLSNCVAIHSLAHMYTLSQLALKAADMIRRNFHKVIQDEEFYTLPFHLIRDWLS-DLEITVDSEEVLFETVLKWVQRN 216 (279)
T ss_dssp HCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTHHHHTTSSGGGGSCHHHHHHHHT-CSSCCCSCHHHHHHHHHHHHHTT
T ss_pred cCCcchHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCcChhcCCHHHHHHHhc-CcCCCCCCHHHHHHHHHHHHHcC
Confidence 36788999999999999999999999999865332 222222222 11222 346888888888654
Q ss_pred -------HHHhhCChhhhccchhc
Q 005282 665 -------FDKMRNKPWFFRLIRCV 681 (704)
Q Consensus 665 -------~~~~~~~~~f~~L~~~~ 681 (704)
+..+...=.|.-++++.
T Consensus 217 ~~~r~~~~~~ll~~VRf~l~~~~~ 240 (279)
T 3i3n_A 217 AEERERYFEELFKLLRLSQMKPTY 240 (279)
T ss_dssp HHHHTTTHHHHHTTSCGGGSCHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCHHH
Confidence 34444444455555443
No 196
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=44.13 E-value=5.7 Score=33.08 Aligned_cols=34 Identities=26% Similarity=0.446 Sum_probs=30.4
Q ss_pred hCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005282 632 IISVENIMLMYELSEAYNATTLKQSCILFILEKF 665 (704)
Q Consensus 632 ~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~ 665 (704)
.++.+|+..++..|..|+++.|.+.|.+|+..++
T Consensus 100 ~i~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~l 133 (138)
T 2z8h_A 100 ILSKDNVDEVCRCVEFLSVHNIEESCFQFLKFKF 133 (138)
T ss_dssp CCCTTTHHHHHHHHHHHTCGGGHHHHHHHTTCCC
T ss_pred ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 3677899999999999999999999999987654
No 197
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=43.53 E-value=78 Score=31.79 Aligned_cols=106 Identities=7% Similarity=-0.044 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHHhhcCChhhHHHHHHcC-CcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCC
Q 005282 116 HEVEKECAFALGLLAVKPEHQQIIVDTG-ALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDG 194 (704)
Q Consensus 116 ~~v~~~a~~~L~~l~~~~~~~~~~~~~g-~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 194 (704)
+..+..++++++|+-.++.+...+.... ....+++.+...-..........++..++..+.|++......+. ....
T Consensus 276 ~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~~el 352 (425)
T 3pst_A 276 ITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLEL 352 (425)
T ss_dssp HHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---CTTH
T ss_pred hhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHH
Confidence 4899999999999998888655555332 23455555532211111011226888888889998843221111 1223
Q ss_pred cHHHHHHhc---------CCCHHHHHHHHHHHHHhccCC
Q 005282 195 IPPLVELLK---------FVDVKVQRAAAGALRTLAFKN 224 (704)
Q Consensus 195 i~~L~~ll~---------~~~~~~~~~a~~~L~~l~~~~ 224 (704)
...+..++. ..+++....++.+|++|....
T Consensus 353 ~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~ 391 (425)
T 3pst_A 353 LPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 391 (425)
T ss_dssp HHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 445666665 358899999999999998533
No 198
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=43.33 E-value=58 Score=32.00 Aligned_cols=106 Identities=7% Similarity=-0.044 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHHhhcCChhhHHHHHHcC-CcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCC
Q 005282 116 HEVEKECAFALGLLAVKPEHQQIIVDTG-ALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDG 194 (704)
Q Consensus 116 ~~v~~~a~~~L~~l~~~~~~~~~~~~~g-~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 194 (704)
+..+..++++++|+-.++.+...+.... ....+++.+...-..........++..++..+.|++......+. ....
T Consensus 213 ~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~---~~el 289 (362)
T 3l3f_X 213 ITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLEL 289 (362)
T ss_dssp HHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS---CTTH
T ss_pred hhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHH
Confidence 4899999999999998888655544332 23344554432211111011126788888889998843221111 1233
Q ss_pred cHHHHHHhc---------CCCHHHHHHHHHHHHHhccCC
Q 005282 195 IPPLVELLK---------FVDVKVQRAAAGALRTLAFKN 224 (704)
Q Consensus 195 i~~L~~ll~---------~~~~~~~~~a~~~L~~l~~~~ 224 (704)
...+...+. ..+++....++.+|++|....
T Consensus 290 ~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~ 328 (362)
T 3l3f_X 290 LPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 328 (362)
T ss_dssp HHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 445666665 358899999999999998633
No 199
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=42.65 E-value=1.2e+02 Score=27.53 Aligned_cols=105 Identities=11% Similarity=0.070 Sum_probs=66.9
Q ss_pred HHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC-chhhH
Q 005282 151 LLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKN-DENKK 229 (704)
Q Consensus 151 lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~ 229 (704)
++....+.....++|......+..+.. .+.. ...++..|.+-+.+.++.++..|+..|-.+..+. .....
T Consensus 12 ~i~kAT~~~~~~~dw~~ileicD~I~~----~~~~-----~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~ 82 (226)
T 3zyq_A 12 LLDKATSQLLLETDWESILQICDLIRQ----GDTQ-----AKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHD 82 (226)
T ss_dssp HHHHHTCTTCSSCCHHHHHHHHHHHHT----TSSC-----HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHcCCCCCCcCHHHHHHHHHHHhC----CCcc-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHH
Confidence 333333333334456665555555442 1111 1234667888888999999999999999887632 23455
Q ss_pred HhHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhc
Q 005282 230 LIVECNALPTLVLMLR-SEDASVHFEAVGVIGNLVH 264 (704)
Q Consensus 230 ~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~ 264 (704)
.+....++..|.+++. ..++.|+..++..+..-+.
T Consensus 83 eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 83 EVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 5556667777777776 3577888888888877653
No 200
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=40.49 E-value=53 Score=27.54 Aligned_cols=72 Identities=19% Similarity=0.170 Sum_probs=55.9
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh-hhHHHHHHcCCHHHHHHHhcC------CChhHHHHHHHHHHHHhcc
Q 005282 236 ALPTLVLMLRSEDASVHFEAVGVIGNLVHSSP-SIKKEVILAGALQPVIGLLSS------SCSESKREAALLLGQFAAA 307 (704)
Q Consensus 236 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~ll~~------~~~~~~~~a~~~L~~l~~~ 307 (704)
++..|.+-+.+.++.++..|+..|-.+..+.. .+...+....++..|+.++.. .+..++..++..+...+..
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 127 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG 127 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 35678888889999999999999999886654 344556667788889988863 4677888888888887643
No 201
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=38.81 E-value=1e+02 Score=25.44 Aligned_cols=81 Identities=6% Similarity=0.011 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhcCccc---cChhhHHHHHHHHhhhChH---------------hHHHHHHHHHHhhCChhhHHHHHHHHH
Q 005282 585 NVFELMMRFIYTGNVD---VSVDIAQDLLRAADQYLLE---------------GLKRLCEYSIAQIISVENIMLMYELSE 646 (704)
Q Consensus 585 ~~~~~~l~~~Y~~~~~---~~~~~~~~ll~~A~~~~~~---------------~l~~~c~~~l~~~~~~~~~~~~~~~a~ 646 (704)
..++.+++-.-.+.++ ++...+..+++.+.+..-. .+.+--.+|+ .++.+++++++..|.
T Consensus 25 ~~ik~ml~~~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~--~vd~~~l~eLi~AAn 102 (141)
T 1fs1_B 25 VTIKTMLEDLGMDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFL--KVDQGTLFELILAAN 102 (141)
T ss_dssp HHHHHHHHHTCCSSEECTTCCHHHHHHHHHHHHHHTTCC-----------------HHHHHHT--CSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhhhhHHHHHHH--hCCHHHHHHHHHHHH
Confidence 4556665532123343 4566778888888776521 1222223445 388999999999999
Q ss_pred HcCCHHHHHHHHHHHHHHHHH
Q 005282 647 AYNATTLKQSCILFILEKFDK 667 (704)
Q Consensus 647 ~~~~~~L~~~~~~~i~~~~~~ 667 (704)
..+...|.+.|..+++.....
T Consensus 103 yL~I~~Lldl~c~~vA~~ikg 123 (141)
T 1fs1_B 103 YLDIKGLLDVTCKTVANMIKG 123 (141)
T ss_dssp HHTCHHHHHHHHHHHHHHHTT
T ss_pred HHhhhHHHHHHHHHHHHHHcC
Confidence 999999999999999987754
No 202
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=38.79 E-value=58 Score=30.27 Aligned_cols=132 Identities=10% Similarity=0.066 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhccCCchhhHHhHhcCChHHHH-HhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcC
Q 005282 210 QRAAAGALRTLAFKNDENKKLIVECNALPTLV-LMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSS 288 (704)
Q Consensus 210 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~-~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~ 288 (704)
+..++..++-+..+.+. . +.+..++ ..+.+.++..+..++++++|+..+....++.+........++..+.+
T Consensus 71 ~fP~lDllRl~~~~~~~-~------~~l~~~l~~~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~ 143 (253)
T 3gae_A 71 KTPAYDIVRLIVKKLPY-S------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 143 (253)
T ss_dssp CHHHHHHHHHHGGGCSC-G------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHHcCCch-H------HHHHHHHHHhcCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHH
Confidence 44566666666653222 1 1222222 23335577899999999999997744244444333223334443321
Q ss_pred --------CChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhC---------CCCHHHHHHHHHHHHHhhcCCc
Q 005282 289 --------SCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQ---------SPDSQLKEMSAFALGRLAQDTH 351 (704)
Q Consensus 289 --------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~---------~~~~~v~~~a~~~L~~l~~~~~ 351 (704)
.+..++..++..+.|++......+. +......+...+. ..+.+....++-+|+++...+.
T Consensus 144 ~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~ 220 (253)
T 3gae_A 144 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 220 (253)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSG
T ss_pred HhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcH
Confidence 2345677777888888742111000 0122334444443 1377888889999999986443
No 203
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=37.89 E-value=46 Score=28.26 Aligned_cols=64 Identities=5% Similarity=0.009 Sum_probs=47.4
Q ss_pred cChhhHHHHHHHHhhhCh---------------HhHHHHHHHHHHhhCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005282 601 VSVDIAQDLLRAADQYLL---------------EGLKRLCEYSIAQIISVENIMLMYELSEAYNATTLKQSCILFILEKF 665 (704)
Q Consensus 601 ~~~~~~~~ll~~A~~~~~---------------~~l~~~c~~~l~~~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~ 665 (704)
++...+..++..+.+..- ..+..--.+|+ .++.+++++++..|...+...|.+.|..|++..+
T Consensus 49 V~~~iL~kViey~~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~--~id~~~l~eLl~AAnyL~I~~Lld~~c~~va~~i 126 (159)
T 2ast_A 49 VNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFL--KVDQGTLFELILAANYLDIKGLLDVTCKTVANMI 126 (159)
T ss_dssp SCHHHHHHHHHHHHHTTTCCC-----------CCCCCHHHHHHT--CSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCcCCCCcccccccccchhhhhHHHHHHH--cCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 355567778787776541 11222334455 4889999999999999999999999999998876
Q ss_pred H
Q 005282 666 D 666 (704)
Q Consensus 666 ~ 666 (704)
.
T Consensus 127 ~ 127 (159)
T 2ast_A 127 K 127 (159)
T ss_dssp S
T ss_pred c
Confidence 5
No 204
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=35.02 E-value=19 Score=30.03 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=26.6
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 005282 633 ISVENIMLMYELSEAYNATTLKQSCILFI 661 (704)
Q Consensus 633 ~~~~~~~~~~~~a~~~~~~~L~~~~~~~i 661 (704)
++.+|+..++..|..|+.+.|.+.|.+|+
T Consensus 115 i~~~~v~~ll~~A~~l~i~~L~~~C~~~L 143 (144)
T 2ppi_A 115 LNEDTIQDVVQAADLLLLTDLKTLCCEFL 143 (144)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHh
Confidence 56789999999999999999999998875
No 205
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=34.93 E-value=19 Score=29.91 Aligned_cols=34 Identities=12% Similarity=0.061 Sum_probs=26.0
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005282 633 ISVENIMLMYELSEAYNATTLKQSCILFILEKFD 666 (704)
Q Consensus 633 ~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~ 666 (704)
++.+++..++..|..|+++.|.+.|.+|+.+++.
T Consensus 91 ~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~ 124 (145)
T 4eoz_A 91 NLDKMADDLLAAADKYALERLKVMCEDALCSNLS 124 (145)
T ss_dssp TGGGTHHHHHHHHHHTTCHHHHHHHHCC------
T ss_pred CcHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC
Confidence 4568899999999999999999999999987653
No 206
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=34.89 E-value=18 Score=41.42 Aligned_cols=183 Identities=15% Similarity=0.095 Sum_probs=97.1
Q ss_pred CcHHHHHHhcCCCH-HHHHH-HHHHHHHhccCCchhhHHhHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhc-----C
Q 005282 194 GIPPLVELLKFVDV-KVQRA-AAGALRTLAFKNDENKKLIVECNALPTLVLMLR-SEDASVHFEAVGVIGNLVH-----S 265 (704)
Q Consensus 194 ~i~~L~~ll~~~~~-~~~~~-a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~-----~ 265 (704)
.+|.|+.+.+..+. ++... +..++..++. .+-....+- .++..+..... +++. .|..++..+..+.. -
T Consensus 761 llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~-~~~~~~~~~--~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l 836 (997)
T 1vsy_5 761 VLPFLIGLVKHKDVCALASLDPVRLYAGLGY-MPIRKNHVA--AIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQL 836 (997)
T ss_dssp TTTTTCTTSSCSHHHHHTTCCSHHHHHHTSS-SCCCHHHHH--HHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHhhcCcHHHHHhhHHHHHHHHHhc-CCCCHHHHH--HHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHc
Confidence 67777777765554 66666 6677777774 332222211 12334444444 4566 77777666544432 1
Q ss_pred ChhhHHHHHHcCCHHHHHHHhcCCC-hhHHHHHHHHHHHHhccC-C-cchHHHHh---cCC-----hHHHHHhhCCCCHH
Q 005282 266 SPSIKKEVILAGALQPVIGLLSSSC-SESKREAALLLGQFAAAD-S-NSKVHIVQ---RGA-----VRPLIEMLQSPDSQ 334 (704)
Q Consensus 266 ~~~~~~~~~~~~~l~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~-~-~~~~~~~~---~~~-----i~~L~~ll~~~~~~ 334 (704)
++... ..+...++.+|.++. .+||+.|+.+|+-+.... . .....++. ... ...+-+-. +.+..
T Consensus 837 ~~~~~-----~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~-~~~~~ 910 (997)
T 1vsy_5 837 TEEEK-----NKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKL-SKTDI 910 (997)
T ss_dssp CTTHH-----HHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHH-HHHCH
T ss_pred CHHHH-----HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhccccccccccc-chHHH
Confidence 22211 246778888999999 999999999999886544 3 21111211 111 11111100 00113
Q ss_pred HHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhh----cCCChhHHHHHHHHHHHccc
Q 005282 335 LKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLL----DSKNGSLQHNAAFALYGLAD 389 (704)
Q Consensus 335 v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll----~~~~~~v~~~a~~~L~~l~~ 389 (704)
.+..|...|+.+....+.-.. -...+|.++..| .+ ...+...+-.+|.++=.
T Consensus 911 ~rH~aVLgL~AlV~a~Py~vP--~P~w~P~~l~~La~~~~~-~~~i~~tvk~tlseFkr 966 (997)
T 1vsy_5 911 KIHGNVLGLGAIISAFPYVFP--LPPWIPKNLSNLSSWART-SGMTGNAAKNTISEFKK 966 (997)
T ss_dssp HHHHHHHHHHHHHTTCSCCSS--CCTHHHHHHHHHHTTSSS-CSSHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCCCC--CCcccHHHHHHHHHHhCC-CCchHHHHHHHHHHHHh
Confidence 455667777777654322110 011334433333 33 33488888889988865
No 207
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=34.14 E-value=2.1e+02 Score=24.06 Aligned_cols=71 Identities=14% Similarity=0.107 Sum_probs=52.0
Q ss_pred CCcHHHHHHhc-CCCHHHHHHHHHHHHHhccCC-chhhHHhHhcCChHH-HHHhhc---CCCHHHHHHHHHHHHHHh
Q 005282 193 DGIPPLVELLK-FVDVKVQRAAAGALRTLAFKN-DENKKLIVECNALPT-LVLMLR---SEDASVHFEAVGVIGNLV 263 (704)
Q Consensus 193 ~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~-L~~lL~---~~~~~v~~~a~~~L~~l~ 263 (704)
.++..|.+-++ +.++.++..|+..|-.+..+. +.....+....++.. |++++. .+...|+..++..+..-+
T Consensus 53 ~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 53 DALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 34566888887 588999999999999888643 555566667777887 778774 234688888888776655
No 208
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=33.42 E-value=32 Score=33.15 Aligned_cols=33 Identities=27% Similarity=0.148 Sum_probs=30.2
Q ss_pred cChhhHHHHHHHHhhhChHhHHHHHHHHHHhhC
Q 005282 601 VSVDIAQDLLRAADQYLLEGLKRLCEYSIAQII 633 (704)
Q Consensus 601 ~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~ 633 (704)
++.+++..++.+|+.|+++.|++.|.+++..++
T Consensus 272 ~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~ 304 (312)
T 3hqi_A 272 LSVENAAEILILADLHSADQLKTQAVDFINYHA 304 (312)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 577899999999999999999999999998754
No 209
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=32.75 E-value=35 Score=27.32 Aligned_cols=32 Identities=13% Similarity=0.168 Sum_probs=27.5
Q ss_pred hCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005282 632 IISVENIMLMYELSEAYNATTLKQSCILFILE 663 (704)
Q Consensus 632 ~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~ 663 (704)
.++.+|+..++..|..|+.+.|.+.|.+++..
T Consensus 86 ~i~~~~v~~ll~aA~~l~i~~l~~~C~~~~~~ 117 (119)
T 3m5b_A 86 ELQPGELRPLQEAARALGVQSLEEACWRARGD 117 (119)
T ss_dssp EECGGGHHHHHHHHHHTTCHHHHHHHHHHC--
T ss_pred CcCHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 45789999999999999999999999988654
No 210
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=32.67 E-value=6.7e+02 Score=29.47 Aligned_cols=285 Identities=13% Similarity=0.095 Sum_probs=148.2
Q ss_pred HHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHH-----
Q 005282 67 AAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVD----- 141 (704)
Q Consensus 67 ~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~----- 141 (704)
++.+.+..|-.+..+.++... +..|.++|..+. .+....+.+|++|.-+++....+.+
T Consensus 173 lQ~diI~sLPeIl~ds~H~~v------~~~L~~lL~~~~-----------~L~~~iLdaLs~L~Ls~~~l~~vr~~vl~~ 235 (1323)
T 3s4w_B 173 LQHDFITSLPEILGDSQHANV------GKELGELLVQNT-----------SLTVPILDVFSSLRLDPNFLSKIRQLVMGK 235 (1323)
T ss_dssp THHHHHHTHHHHSCGGGHHHH------HHHHHHHHHHCS-----------TTHHHHHHHHHHSCCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhHHHhcchhhHHH------HHHHHHHHhcCc-----------chHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 456667777777776665433 577888888754 4788889999999966655444332
Q ss_pred -----cCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcC----hh----hhhhhhccC--------------C
Q 005282 142 -----TGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHEN----AN----IKTRVRVED--------------G 194 (704)
Q Consensus 142 -----~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~----~~----~~~~~~~~~--------------~ 194 (704)
...+|.+++++-...... ++ ..+...|+..-... |. ....+...| .
T Consensus 236 L~s~~~e~LP~lIkFLL~s~t~~------~~-~evI~~LR~~L~~~~~~~p~~~~~s~~~~k~~~~~~~~~~~~~s~~~~ 308 (1323)
T 3s4w_B 236 LSSVRLEDFPVIVKFLLHSVTDT------TS-LEVIAELRENLNVQQFILPSRIQASQSKLKSKGLASSSGNQENSDKDC 308 (1323)
T ss_dssp TTSSCTTHHHHHHHHHHHSCSST------TH-HHHHHHHHHHHHCC----------------------------CHHHHH
T ss_pred hccCChhhhHHHHHHHHHhCCHh------hH-HHHHHHHHHHcCccccccchhhhhhhhhhhccccccCCccccccccch
Confidence 245899999887655432 11 12222333211100 00 000000001 1
Q ss_pred cHHHHHHhcC---CCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhh-cCCCHHHHHHHHHHHHHHhcCChhhH
Q 005282 195 IPPLVELLKF---VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLML-RSEDASVHFEAVGVIGNLVHSSPSIK 270 (704)
Q Consensus 195 i~~L~~ll~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~ 270 (704)
...++..+++ -+..+..+.+..+.++.... +...++.++-++ .+.+...+..+-.++.+-.....-..
T Consensus 309 ~~lild~lks~l~~~k~i~eAwlK~I~~~~~~~--------~hk~~Dl~vLlii~s~n~~~rk~aE~ilrkkI~~G~it~ 380 (1323)
T 3s4w_B 309 IVLVFDVIKSAIRYEKTISEAWFKAIERIESAA--------EHKSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSDCIQE 380 (1323)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHGGGST--------TCCTHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTCSCH
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhCCCccc--------ccchhHHHHHHHHHcCCchhHHHHHHHHHHHHHcCCchH
Confidence 1124444442 25566666666676665311 124555555443 34455667777777777664421111
Q ss_pred H---H------HHHcCCHHHHH----HHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHH
Q 005282 271 K---E------VILAGALQPVI----GLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKE 337 (704)
Q Consensus 271 ~---~------~~~~~~l~~L~----~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~ 337 (704)
+ . .+-...++.++ .++.+.++.++.-+...-..+-...+. ..+..++..|+....++...-..
T Consensus 381 ~ll~~~f~~h~~vL~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd~----~~qqeVl~~Lv~hi~sg~~~eVd 456 (1323)
T 3s4w_B 381 QLLDSAFSTHYLVLKDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFDT----YCQQEVVGALVTHVCSGTEAEVD 456 (1323)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSCH----HHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHhhhcCCCcHHHH
Confidence 1 1 11123445444 345677777766666554444332222 33345677777777666555556
Q ss_pred HHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcc
Q 005282 338 MSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLA 388 (704)
Q Consensus 338 ~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~ 388 (704)
.|+.+|..++......-.. ..-.+..+++.+.+-+..-.+.....|+.++
T Consensus 457 ~ALdvL~~L~~~~~~~l~~-~a~~l~giLD~l~~l~~~QiRklf~iL~~la 506 (1323)
T 3s4w_B 457 TALDVLLELIVLNASAMRL-NAAFVKGILDYLENMSPQQIRKIFCILSTLA 506 (1323)
T ss_dssp HHHHHHHHHHHHCHHHHHH-THHHHHGGGGGGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHhH-HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Confidence 6888888888643221111 1112344455555545444444556666665
No 211
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=29.81 E-value=3e+02 Score=24.56 Aligned_cols=128 Identities=9% Similarity=-0.037 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHhhc-C-ChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCC
Q 005282 117 EVEKECAFALGLLA-V-KPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDG 194 (704)
Q Consensus 117 ~v~~~a~~~L~~l~-~-~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 194 (704)
+.+..|+.++.... . .++. ++.+-.++...+ -|++....+.+++.+....+. ..
T Consensus 70 E~r~la~~~l~~~~~~~~~~~---------l~~~~~~l~~~~-------nWd~~D~~a~~~~~~~~~~~~--------~~ 125 (220)
T 2b6c_A 70 EYQYVAIDLALQNVQRFSLEE---------VVAFKAYVPQKA-------WWDSVDAWRKFFGSWVALHLT--------EL 125 (220)
T ss_dssp HHHHHHHHHHHHTGGGCCHHH---------HHHGGGGTTTTC-------SHHHHHHHHHHHHHHHHHSGG--------GH
T ss_pred HHHHHHHHHHHHHHhhCCHHH---------HHHHHHHhccCC-------cHHHHHHHHHHHHHHHHHChH--------HH
Confidence 88888888888765 2 2211 122222333322 267777666667777654442 12
Q ss_pred cHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 005282 195 IPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVI 274 (704)
Q Consensus 195 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 274 (704)
.+.+...+.+++.-+++.|+..+.... ....... .++.+-.++.+++.-|+..+.|+|..++..+++....++
T Consensus 126 ~~~i~~W~~s~~~w~rR~ai~~~l~~~--~~~~~~~-----~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~~fl 198 (220)
T 2b6c_A 126 PTIFALFYGAENFWNRRVALNLQLMLK--EKTNQDL-----LKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEELM 198 (220)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHTTTTCG--GGCCHHH-----HHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHH--HCCCHHH-----HHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 355788888999999988877553222 1111111 144455577788999999999999999988877665555
Q ss_pred H
Q 005282 275 L 275 (704)
Q Consensus 275 ~ 275 (704)
.
T Consensus 199 ~ 199 (220)
T 2b6c_A 199 K 199 (220)
T ss_dssp H
T ss_pred h
Confidence 3
No 212
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=27.73 E-value=1.3e+02 Score=30.25 Aligned_cols=101 Identities=12% Similarity=0.118 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHHHhhhcChh-hhhhhhccCCcHHHHHHhc--------CCCHHHHHHHHHHHHHhccCCchhhHHhHhcC
Q 005282 165 SGVIRRAADAITNLAHENAN-IKTRVRVEDGIPPLVELLK--------FVDVKVQRAAAGALRTLAFKNDENKKLIVECN 235 (704)
Q Consensus 165 ~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~ll~--------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 235 (704)
+..+..++++++|+.. ++. .+..+........+++.+. ..+..++.++...+.|++......+. +..
T Consensus 276 ~an~MltlR~laNlF~-~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~~e 351 (425)
T 3pst_A 276 ITLTMLTVRILVNCFN-NENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLE 351 (425)
T ss_dssp HHHHHHHHHHHHHHTT-CTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---CTT
T ss_pred hhHHHHHHHHHHHhcC-CcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHH
Confidence 3788899999999986 444 3333333223455555543 12467888888999999752111110 122
Q ss_pred ChHHHHHhhc---------CCCHHHHHHHHHHHHHHhcCChhh
Q 005282 236 ALPTLVLMLR---------SEDASVHFEAVGVIGNLVHSSPSI 269 (704)
Q Consensus 236 ~i~~L~~lL~---------~~~~~v~~~a~~~L~~l~~~~~~~ 269 (704)
.+..+...+. ..+++....++-+|++|....+..
T Consensus 352 l~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~~~ 394 (425)
T 3pst_A 352 LLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTL 394 (425)
T ss_dssp HHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHH
Confidence 3445555555 258899999999999998654443
No 213
>2plx_B Peptide inhibitor; helix-turn-helix, hydrolase; HET: FLC; 1.56A {Bos taurus}
Probab=27.46 E-value=48 Score=17.25 Aligned_cols=22 Identities=9% Similarity=0.120 Sum_probs=16.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHH
Q 005282 639 MLMYELSEAYNATTLKQSCILF 660 (704)
Q Consensus 639 ~~~~~~a~~~~~~~L~~~~~~~ 660 (704)
++++.+|..+..++|...|++-
T Consensus 2 ckvmcyaqrhsspellrrcldn 23 (26)
T 2plx_B 2 CKVMCYAQRHSSPELLRRCLDN 23 (26)
T ss_dssp HHHHHHHBCCCCHHHHHHHHHH
T ss_pred ceEEeehhhcCCHHHHHHHHhc
Confidence 4567778888888888888764
No 214
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=26.22 E-value=2.6e+02 Score=25.08 Aligned_cols=71 Identities=4% Similarity=0.038 Sum_probs=51.9
Q ss_pred CCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC-chhhHHhHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHHh
Q 005282 193 DGIPPLVELLKFVDVKVQRAAAGALRTLAFKN-DENKKLIVECNALPTLVLMLR-SEDASVHFEAVGVIGNLV 263 (704)
Q Consensus 193 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~ 263 (704)
.++..|.+-|.+.++.++..|+..|-.+..+. +.....+....++..|+.++. ..+..|+..++..+..-+
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 34566788888999999999999999988643 334455666667777887776 346778887777766554
No 215
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=26.14 E-value=1.1e+02 Score=25.96 Aligned_cols=71 Identities=11% Similarity=0.087 Sum_probs=52.0
Q ss_pred ChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCC-hhhHHHHHHcCCHHH-HHHHhcC---CChhHHHHHHHHHHHHhc
Q 005282 236 ALPTLVLMLR-SEDASVHFEAVGVIGNLVHSS-PSIKKEVILAGALQP-VIGLLSS---SCSESKREAALLLGQFAA 306 (704)
Q Consensus 236 ~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~-L~~ll~~---~~~~~~~~a~~~L~~l~~ 306 (704)
++..|.+-|+ +.++.++..|+.+|-.+..+. +.....+....++.. |+.++.. .+..++..++..+...+.
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 3566778887 589999999999999988765 445555666778887 7787742 234778888888777653
No 216
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=25.86 E-value=12 Score=30.57 Aligned_cols=33 Identities=12% Similarity=0.115 Sum_probs=23.2
Q ss_pred hCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005282 632 IISVENIMLMYELSEAYNATTLKQSCILFILEK 664 (704)
Q Consensus 632 ~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~ 664 (704)
.++.+|+..++..|..|+.+.|.+.|.+|+.+.
T Consensus 95 ~i~~~~~~~ll~~A~~~~i~~l~~~C~~~L~~~ 127 (129)
T 3ga1_A 95 SMNVGDQDLLMYTAGFLQIQEIMEKGTEFFLKV 127 (129)
T ss_dssp ECCTTTHHHHHHHHHHTTBTTSSCC--------
T ss_pred ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 467889999999999999999999999998764
No 217
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=25.35 E-value=78 Score=28.76 Aligned_cols=71 Identities=15% Similarity=0.243 Sum_probs=52.3
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh-hHHHHHHcCCHHHHHHHhcC-CChhHHHHHHHHHHHHhc
Q 005282 236 ALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPS-IKKEVILAGALQPVIGLLSS-SCSESKREAALLLGQFAA 306 (704)
Q Consensus 236 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~l~~L~~ll~~-~~~~~~~~a~~~L~~l~~ 306 (704)
++..|.+-|.+.++.++..|+.+|-.+..+... ....+....++..|..++.. .+..++..++..+...+.
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 356788888899999999999999988865333 44555566677777777753 456778888887777664
No 218
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=25.04 E-value=1.2e+02 Score=29.64 Aligned_cols=100 Identities=12% Similarity=0.110 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHHHhhhcChh-hhhhhhccCCcHHHHHHhc--------CCCHHHHHHHHHHHHHhccCCchhhHHhHhcC
Q 005282 165 SGVIRRAADAITNLAHENAN-IKTRVRVEDGIPPLVELLK--------FVDVKVQRAAAGALRTLAFKNDENKKLIVECN 235 (704)
Q Consensus 165 ~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~ll~--------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 235 (704)
+..+..++++++|+.. ++. .+..+........+++.+. ..+..++.++...+.|++......+. +..
T Consensus 213 ~~n~MltlR~laNlF~-~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~---~~e 288 (362)
T 3l3f_X 213 ITLTMLTVRILVNCFN-NENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLE 288 (362)
T ss_dssp HHHHHHHHHHHHHHTT-CTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS---CTT
T ss_pred hhHHHHHHHHHHHhcc-CcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHH
Confidence 3788899999999986 444 3333322212334444442 22567888888999999752111110 122
Q ss_pred ChHHHHHhhc---------CCCHHHHHHHHHHHHHHhcCChh
Q 005282 236 ALPTLVLMLR---------SEDASVHFEAVGVIGNLVHSSPS 268 (704)
Q Consensus 236 ~i~~L~~lL~---------~~~~~v~~~a~~~L~~l~~~~~~ 268 (704)
....+...+. ..+++....++-+|++|....+.
T Consensus 289 l~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~~~ 330 (362)
T 3l3f_X 289 LLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPT 330 (362)
T ss_dssp HHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHH
Confidence 3445666665 25889999999999999864443
No 219
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=23.60 E-value=5.5e+02 Score=25.49 Aligned_cols=239 Identities=9% Similarity=0.028 Sum_probs=108.3
Q ss_pred hhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCC
Q 005282 82 EEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGN 160 (704)
Q Consensus 82 ~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~ 160 (704)
+...+..++...+..|+.++.++++ .-|...-.+|..+- .-...|..+. ...-..+.+++.....-
T Consensus 119 ~~~~k~~id~~Fi~~Ll~lfdSeDp----------rER~~LktiLhrIY~kf~~~R~~Ir-k~innif~~fiye~e~~-- 185 (403)
T 3fga_B 119 PNIAKKYIDQKFVLQLLELFDSEDP----------RERDFLKTTLHRIYGKFLGLRAYIR-KQINNIFYRFIYETEHH-- 185 (403)
T ss_dssp HHHHTTTSCHHHHHHHHHGGGCSCH----------HHHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHTTCCC--
T ss_pred hhhHHhhcCHHHHHHHHHHcCCCCh----------HHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHhcCcccC--
Confidence 4445555566678889999999865 88888888888887 4544444333 22223445554432211
Q ss_pred CcchhHHHHHHHHHHHHhhhcC-hhhhhhhhccCCcHHHHHHhcCCCHH-HHHHHHHHHHHhccCCchhhHHhHhcCChH
Q 005282 161 SRALSGVIRRAADAITNLAHEN-ANIKTRVRVEDGIPPLVELLKFVDVK-VQRAAAGALRTLAFKNDENKKLIVECNALP 238 (704)
Q Consensus 161 ~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~-~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 238 (704)
.-....+.+++.+..+- .+.+.. ...-....|+.+.+...-. -...-..++......++.....+ +.
T Consensus 186 -----~GIaeLLeilgsIinGfa~PLkee-hk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~v-----i~ 254 (403)
T 3fga_B 186 -----NGIAELLEILGSIINGFALPLKEE-HKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VM 254 (403)
T ss_dssp -----TTHHHHHHHHHHHHHHCCSSCCHH-HHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHH-----HH
T ss_pred -----CCHHHHHHHHHHHHcccCCCchHH-HHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHH-----HH
Confidence 11223344444443221 111110 0001122333333332211 11223334444443333322221 12
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhc
Q 005282 239 TLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQR 318 (704)
Q Consensus 239 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 318 (704)
.+++.--..++.-...-+.-+..+...-+...-.-+...+...+...+.+++..+.+.|+....| +....++..
T Consensus 255 ~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnN------e~i~~li~~ 328 (403)
T 3fga_B 255 ALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNN------EYIMSLISD 328 (403)
T ss_dssp HHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGC------HHHHHHHHT
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhcc------HHHHHHHHH
Confidence 22222223343333334444444443322111111112245566667778777777666543211 111111111
Q ss_pred ---CChHHHHHhh----C-CCCHHHHHHHHHHHHHhhcCC
Q 005282 319 ---GAVRPLIEML----Q-SPDSQLKEMSAFALGRLAQDT 350 (704)
Q Consensus 319 ---~~i~~L~~ll----~-~~~~~v~~~a~~~L~~l~~~~ 350 (704)
.++|.+...+ + +-+..++..+..++..+...+
T Consensus 329 n~~~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~d 368 (403)
T 3fga_B 329 NAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMN 368 (403)
T ss_dssp THHHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhC
Confidence 1334433333 2 347888888888887776543
No 220
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=22.16 E-value=1.2e+02 Score=27.24 Aligned_cols=70 Identities=14% Similarity=0.207 Sum_probs=51.0
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh-hHHHHHHcCCHHHHHHHhcC-CChhHHHHHHHHHHHHh
Q 005282 236 ALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPS-IKKEVILAGALQPVIGLLSS-SCSESKREAALLLGQFA 305 (704)
Q Consensus 236 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~l~~L~~ll~~-~~~~~~~~a~~~L~~l~ 305 (704)
++..|.+-|.+.++.++..|+.+|-.+..+... ....+....++..|+.++.+ .+..++..++..+...+
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 356677888899999999999999999876533 44455556677788877753 35667777777766665
No 221
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=21.18 E-value=70 Score=29.64 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=29.6
Q ss_pred hCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005282 632 IISVENIMLMYELSEAYNATTLKQSCILFILEKF 665 (704)
Q Consensus 632 ~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~ 665 (704)
.++.+++..++..|..|+.+.|.+.|.+|+.+++
T Consensus 98 ~i~~~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l 131 (256)
T 3hve_A 98 RLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCI 131 (256)
T ss_dssp CCC-CCHHHHHHHHHHHTCHHHHHHHHHHHHHTC
T ss_pred cccHhHHHHHHHHHHHHChHHHHHHHHHHHHhhC
Confidence 3677899999999999999999999999998653
No 222
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=20.18 E-value=6.8e+02 Score=25.27 Aligned_cols=269 Identities=9% Similarity=0.014 Sum_probs=0.0
Q ss_pred ccCCchhhHHHHHHHHHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhh
Q 005282 57 KFSSDETDRAAAKTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEH 135 (704)
Q Consensus 57 ~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~ 135 (704)
++...........+-+-.+..-.. ++...+..++...+..|+.++.++++ .-|...-.+|..+-+.--.
T Consensus 126 ~~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDp----------RERd~LktiLhrIY~Kf~~ 195 (449)
T 2npp_B 126 TLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDP----------RERDFLKTTLHRIYGKFLG 195 (449)
T ss_dssp CCCTTHHHHHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTH----------HHHHHHHHHHHHHHHSCTT
T ss_pred cccccchHHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCCh----------HHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHH-
Q 005282 136 QQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAA- 214 (704)
Q Consensus 136 ~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~- 214 (704)
.+.++....-..+.+++..... ..-....+.+++.+..+-..--..-...-....|+.+.+...-..-..-+
T Consensus 196 ~R~~Irk~i~nif~~fi~e~e~-------~nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ 268 (449)
T 2npp_B 196 LRAYIRKQINNIFYRFIYETEH-------HNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLA 268 (449)
T ss_dssp THHHHHHHHHHHHHHHHHTCSC-------CSCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCC-------CCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHH
Q ss_pred HHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHH
Q 005282 215 GALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESK 294 (704)
Q Consensus 215 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~ 294 (704)
.++......++.....++.. |++.--..+..=...-+.-|..+...-+...-.-+...+...+...+.+++..+.
T Consensus 269 ycv~qf~eKDp~L~~~vi~~-----LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVA 343 (449)
T 2npp_B 269 YCVVQFLEKDSTLTEPVVMA-----LLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVA 343 (449)
T ss_dssp HHHHHHHHHCGGGHHHHHHH-----HHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHH
T ss_pred HHHHHHHhcCcHhHHHHHHH-----HHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q ss_pred HHHHH-----HHHHHhccCCcchHHHHhcCChHHHHHhhCCC-CHHHHHHHHHHHHHhhcCCc
Q 005282 295 REAAL-----LLGQFAAADSNSKVHIVQRGAVRPLIEMLQSP-DSQLKEMSAFALGRLAQDTH 351 (704)
Q Consensus 295 ~~a~~-----~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~ 351 (704)
+.|+. -+.++...+......+ +++.|.+..+.. +..++..+..++..+...+.
T Consensus 344 ErAL~~w~N~~i~~li~~n~~~IlPi----i~p~L~~~s~~HWn~~V~~la~~vlk~l~e~d~ 402 (449)
T 2npp_B 344 ERALYYWNNEYIMSLISDNAAKILPI----MFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQ 402 (449)
T ss_dssp HHHHGGGGCHHHHHHHHTTHHHHHHH----HHHHHTSCTTCCSSTTHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHCCHHHHHHHHhchhhhHHh----hHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCH
Done!