Query 005285
Match_columns 704
No_of_seqs 605 out of 4029
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 21:02:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005285.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005285hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0465 HflB ATP-dependent Zn 100.0 1E-107 3E-112 913.5 50.4 564 36-644 23-592 (596)
2 KOG0734 AAA+-type ATPase conta 100.0 6E-105 1E-109 854.1 39.1 437 164-644 297-736 (752)
3 KOG0731 AAA+-type ATPase conta 100.0 9E-100 2E-104 861.9 46.0 571 37-652 165-758 (774)
4 CHL00176 ftsH cell division pr 100.0 1.3E-93 2.8E-98 822.5 57.6 566 36-645 50-628 (638)
5 PRK10733 hflB ATP-dependent me 100.0 1.8E-90 3.9E-95 804.0 61.5 571 36-654 30-607 (644)
6 TIGR01241 FtsH_fam ATP-depende 100.0 9.8E-81 2.1E-85 706.0 48.6 488 108-641 2-495 (495)
7 COG1222 RPT1 ATP-dependent 26S 100.0 4.8E-57 1E-61 469.9 23.0 246 163-417 143-394 (406)
8 CHL00206 ycf2 Ycf2; Provisiona 100.0 5.4E-54 1.2E-58 515.0 29.7 309 194-544 1620-1981(2281)
9 KOG0730 AAA+-type ATPase [Post 100.0 6.8E-49 1.5E-53 434.7 22.2 244 163-415 426-674 (693)
10 KOG0733 Nuclear AAA ATPase (VC 100.0 4.4E-47 9.5E-52 414.2 23.9 245 162-415 502-769 (802)
11 KOG0733 Nuclear AAA ATPase (VC 100.0 5.4E-46 1.2E-50 405.7 18.4 229 165-398 184-414 (802)
12 KOG0727 26S proteasome regulat 100.0 3.9E-44 8.5E-49 356.3 20.4 245 163-416 147-397 (408)
13 KOG0728 26S proteasome regulat 100.0 1E-43 2.2E-48 353.0 18.9 245 164-417 140-390 (404)
14 KOG0729 26S proteasome regulat 100.0 9.7E-44 2.1E-48 355.8 16.1 246 163-417 169-420 (435)
15 KOG0652 26S proteasome regulat 100.0 2E-43 4.2E-48 352.7 17.3 245 163-416 163-413 (424)
16 KOG0726 26S proteasome regulat 100.0 5.6E-44 1.2E-48 361.3 13.1 247 163-418 177-429 (440)
17 KOG0738 AAA+-type ATPase [Post 100.0 1.7E-42 3.7E-47 362.7 20.2 244 164-415 205-469 (491)
18 COG1223 Predicted ATPase (AAA+ 100.0 1.5E-42 3.2E-47 346.7 18.6 238 164-415 114-355 (368)
19 PF01434 Peptidase_M41: Peptid 100.0 1.3E-41 2.8E-46 345.1 17.8 211 404-639 1-213 (213)
20 PTZ00454 26S protease regulato 100.0 1.4E-40 3E-45 365.6 25.8 244 164-416 138-387 (398)
21 KOG0736 Peroxisome assembly fa 100.0 7.6E-41 1.7E-45 373.3 22.2 248 160-415 661-932 (953)
22 PTZ00361 26 proteosome regulat 100.0 4.1E-39 9E-44 356.2 23.8 245 164-417 176-426 (438)
23 PRK03992 proteasome-activating 100.0 7.5E-39 1.6E-43 352.8 25.5 244 164-416 124-373 (389)
24 COG0464 SpoVK ATPases of the A 100.0 8.5E-38 1.9E-42 355.3 24.5 244 163-415 234-483 (494)
25 KOG0735 AAA+-type ATPase [Post 100.0 4.8E-38 1E-42 347.9 19.8 226 164-398 660-888 (952)
26 KOG0739 AAA+-type ATPase [Post 100.0 6.7E-39 1.5E-43 325.4 11.7 225 163-398 125-353 (439)
27 TIGR01243 CDC48 AAA family ATP 100.0 2.1E-37 4.6E-42 366.9 25.9 243 164-415 446-710 (733)
28 CHL00195 ycf46 Ycf46; Provisio 100.0 6E-37 1.3E-41 343.6 24.6 238 165-416 222-464 (489)
29 KOG0651 26S proteasome regulat 100.0 7E-38 1.5E-42 320.3 12.4 244 164-416 125-374 (388)
30 KOG0737 AAA+-type ATPase [Post 100.0 9.4E-37 2E-41 320.1 20.2 227 163-398 84-314 (386)
31 TIGR01242 26Sp45 26S proteasom 100.0 2.8E-36 6.1E-41 330.1 24.7 244 163-415 114-363 (364)
32 TIGR03689 pup_AAA proteasome A 100.0 9.2E-34 2E-38 317.7 25.0 246 163-417 174-480 (512)
33 KOG0730 AAA+-type ATPase [Post 100.0 1.2E-34 2.7E-39 321.6 14.6 234 166-415 180-416 (693)
34 PLN00020 ribulose bisphosphate 100.0 6.7E-31 1.4E-35 278.8 23.3 224 166-394 110-350 (413)
35 TIGR01243 CDC48 AAA family ATP 100.0 6.9E-31 1.5E-35 311.4 23.7 242 165-415 172-435 (733)
36 KOG0741 AAA+-type ATPase [Post 100.0 1.8E-31 3.8E-36 288.0 11.9 256 164-432 212-504 (744)
37 KOG0732 AAA+-type ATPase conta 100.0 1.3E-30 2.8E-35 304.3 17.2 243 165-416 259-526 (1080)
38 KOG0740 AAA+-type ATPase [Post 100.0 9.6E-30 2.1E-34 276.2 15.4 226 164-399 146-375 (428)
39 KOG0736 Peroxisome assembly fa 99.9 9.9E-25 2.1E-29 244.9 16.0 265 183-488 410-696 (953)
40 KOG0742 AAA+-type ATPase [Post 99.9 9.4E-24 2E-28 222.7 20.0 232 165-413 349-610 (630)
41 KOG0743 AAA+-type ATPase [Post 99.9 3.6E-23 7.9E-28 223.4 17.3 205 167-387 197-412 (457)
42 PF00004 AAA: ATPase family as 99.9 6.2E-21 1.3E-25 177.0 13.7 129 207-344 1-132 (132)
43 CHL00181 cbbX CbbX; Provisiona 99.9 1.9E-20 4.2E-25 198.4 18.8 221 170-408 22-271 (287)
44 TIGR02881 spore_V_K stage V sp 99.8 3.6E-20 7.9E-25 194.0 18.3 211 169-397 4-240 (261)
45 TIGR02880 cbbX_cfxQ probable R 99.8 7.8E-20 1.7E-24 193.7 17.0 211 171-398 22-256 (284)
46 PF05496 RuvB_N: Holliday junc 99.8 1.6E-18 3.4E-23 174.3 17.7 202 164-392 17-226 (233)
47 PRK00080 ruvB Holliday junctio 99.8 8.5E-18 1.8E-22 181.9 20.1 223 165-414 19-249 (328)
48 TIGR00635 ruvB Holliday juncti 99.8 1.9E-17 4.2E-22 176.9 19.6 219 169-414 2-228 (305)
49 TIGR02902 spore_lonB ATP-depen 99.8 1.5E-17 3.3E-22 190.3 18.8 226 162-414 56-331 (531)
50 COG0464 SpoVK ATPases of the A 99.8 2.8E-17 6.1E-22 187.3 20.0 216 190-416 4-227 (494)
51 KOG0735 AAA+-type ATPase [Post 99.7 3.4E-17 7.3E-22 183.2 19.3 209 201-416 428-649 (952)
52 KOG0744 AAA+-type ATPase [Post 99.7 1.1E-17 2.3E-22 173.3 13.8 229 170-414 141-413 (423)
53 COG2255 RuvB Holliday junction 99.7 7.4E-17 1.6E-21 165.1 17.8 225 165-416 20-252 (332)
54 TIGR02639 ClpA ATP-dependent C 99.7 9.8E-17 2.1E-21 190.6 20.1 222 166-416 177-430 (731)
55 TIGR00763 lon ATP-dependent pr 99.7 1.4E-16 3.1E-21 190.1 21.5 171 172-358 321-505 (775)
56 COG2256 MGS1 ATPase related to 99.7 8.5E-17 1.9E-21 171.7 16.7 203 164-415 17-238 (436)
57 PRK11034 clpA ATP-dependent Cl 99.7 2.6E-16 5.7E-21 185.5 17.6 221 167-416 182-434 (758)
58 PRK04195 replication factor C 99.7 7.9E-16 1.7E-20 174.8 18.5 209 163-412 6-222 (482)
59 PRK14962 DNA polymerase III su 99.7 1.4E-15 2.9E-20 171.4 19.1 205 164-413 7-240 (472)
60 PRK14956 DNA polymerase III su 99.7 2.1E-15 4.5E-20 168.0 18.7 210 163-412 10-243 (484)
61 TIGR02928 orc1/cdc6 family rep 99.7 6.4E-15 1.4E-19 161.2 21.8 220 170-415 14-274 (365)
62 PRK12323 DNA polymerase III su 99.7 1.7E-15 3.8E-20 172.4 17.4 207 164-410 9-244 (700)
63 PRK13342 recombination factor 99.7 3.3E-15 7.1E-20 166.7 18.9 201 164-415 5-219 (413)
64 PRK07003 DNA polymerase III su 99.6 3.9E-15 8.5E-20 171.4 19.6 203 163-410 8-239 (830)
65 PRK14960 DNA polymerase III su 99.6 4.6E-15 1E-19 169.3 18.9 204 164-412 8-240 (702)
66 PRK14961 DNA polymerase III su 99.6 8.2E-15 1.8E-19 160.8 19.5 211 163-413 8-242 (363)
67 PLN03025 replication factor C 99.6 3.5E-15 7.6E-20 160.9 16.3 202 163-411 5-219 (319)
68 TIGR00362 DnaA chromosomal rep 99.6 8.5E-15 1.8E-19 163.0 19.7 221 165-415 104-337 (405)
69 PRK00149 dnaA chromosomal repl 99.6 6.7E-15 1.5E-19 166.0 18.5 221 165-415 116-349 (450)
70 PRK06645 DNA polymerase III su 99.6 1.1E-14 2.4E-19 164.8 19.2 213 163-412 13-253 (507)
71 PRK12402 replication factor C 99.6 1.2E-14 2.6E-19 157.1 18.5 209 163-413 7-247 (337)
72 PRK14958 DNA polymerase III su 99.6 8.1E-15 1.8E-19 166.7 17.4 205 163-412 8-241 (509)
73 PRK00411 cdc6 cell division co 99.6 3.8E-14 8.2E-19 156.9 21.8 220 169-415 28-282 (394)
74 PRK14964 DNA polymerase III su 99.6 1.8E-14 3.8E-19 162.1 18.3 204 164-412 6-238 (491)
75 PRK07994 DNA polymerase III su 99.6 2.7E-14 5.8E-19 165.0 19.9 204 164-412 9-241 (647)
76 PRK14963 DNA polymerase III su 99.6 2.8E-14 6.1E-19 162.0 19.5 203 164-412 7-237 (504)
77 PRK08691 DNA polymerase III su 99.6 1.7E-14 3.6E-19 166.2 17.6 211 163-413 8-242 (709)
78 PRK14086 dnaA chromosomal repl 99.6 5.2E-14 1.1E-18 160.7 21.2 222 165-416 282-516 (617)
79 PHA02544 44 clamp loader, smal 99.6 4.2E-14 9E-19 152.0 19.3 204 163-410 13-226 (316)
80 PRK06893 DNA replication initi 99.6 6E-14 1.3E-18 144.3 19.5 212 164-412 9-227 (229)
81 PRK14949 DNA polymerase III su 99.6 3.9E-14 8.5E-19 166.0 20.1 194 163-392 8-225 (944)
82 TIGR03345 VI_ClpV1 type VI sec 99.6 4.4E-14 9.5E-19 169.6 20.9 218 165-412 181-428 (852)
83 PRK07940 DNA polymerase III su 99.6 2.3E-14 5E-19 158.1 17.0 187 168-388 2-215 (394)
84 PRK05563 DNA polymerase III su 99.6 3.8E-14 8.2E-19 163.2 19.2 204 164-412 9-241 (559)
85 KOG2004 Mitochondrial ATP-depe 99.6 1.2E-14 2.6E-19 163.4 13.6 170 172-359 412-597 (906)
86 KOG2028 ATPase related to the 99.6 4.2E-14 9.1E-19 148.5 16.8 208 163-414 130-367 (554)
87 PRK14951 DNA polymerase III su 99.6 4.3E-14 9.4E-19 162.9 18.5 204 164-412 9-246 (618)
88 TIGR03420 DnaA_homol_Hda DnaA 99.6 1.4E-13 3.1E-18 140.3 20.0 207 166-412 10-225 (226)
89 PRK14969 DNA polymerase III su 99.6 4E-14 8.7E-19 161.9 17.5 209 164-412 9-241 (527)
90 PRK13341 recombination factor 99.6 5.4E-14 1.2E-18 165.3 18.8 211 163-415 20-247 (725)
91 PRK14088 dnaA chromosomal repl 99.6 7.2E-14 1.6E-18 156.8 18.5 220 165-415 99-332 (440)
92 PRK07764 DNA polymerase III su 99.6 9.1E-14 2E-18 165.2 19.9 204 164-411 8-242 (824)
93 CHL00095 clpC Clp protease ATP 99.6 1.2E-13 2.5E-18 166.2 21.1 183 167-380 175-381 (821)
94 PRK12422 chromosomal replicati 99.6 2.2E-13 4.8E-18 152.7 21.7 228 165-416 105-344 (445)
95 PRK14952 DNA polymerase III su 99.6 1.1E-13 2.4E-18 159.0 19.6 205 164-412 6-241 (584)
96 TIGR02397 dnaX_nterm DNA polym 99.6 9.6E-14 2.1E-18 151.3 18.3 205 164-413 7-240 (355)
97 KOG0989 Replication factor C, 99.6 8.4E-14 1.8E-18 144.2 16.2 191 163-392 28-235 (346)
98 PRK14959 DNA polymerase III su 99.5 1.1E-13 2.4E-18 158.6 18.5 204 164-412 9-241 (624)
99 PTZ00112 origin recognition co 99.5 1.9E-13 4E-18 158.1 20.2 188 205-416 782-1007(1164)
100 COG0466 Lon ATP-dependent Lon 99.5 2.5E-14 5.4E-19 161.8 12.6 171 173-359 325-509 (782)
101 PRK10865 protein disaggregatio 99.5 5.6E-14 1.2E-18 169.0 16.4 165 166-360 173-356 (857)
102 PRK14957 DNA polymerase III su 99.5 2.1E-13 4.7E-18 155.3 19.6 204 164-412 9-241 (546)
103 PRK05342 clpX ATP-dependent pr 99.5 1.9E-13 4E-18 151.6 18.3 187 168-356 67-323 (412)
104 PRK07133 DNA polymerase III su 99.5 2E-13 4.4E-18 158.6 18.5 209 164-412 11-240 (725)
105 PRK10787 DNA-binding ATP-depen 99.5 2.9E-13 6.3E-18 160.9 20.0 171 172-359 323-507 (784)
106 PRK08084 DNA replication initi 99.5 5.1E-13 1.1E-17 138.0 19.2 209 165-412 16-233 (235)
107 PRK09111 DNA polymerase III su 99.5 2.8E-13 6E-18 156.5 18.3 211 163-413 16-255 (598)
108 PRK14970 DNA polymerase III su 99.5 2.9E-13 6.3E-18 148.7 17.7 211 163-413 9-231 (367)
109 TIGR02640 gas_vesic_GvpN gas v 99.5 5.1E-13 1.1E-17 140.2 18.8 210 178-416 6-258 (262)
110 TIGR03346 chaperone_ClpB ATP-d 99.5 1.9E-13 4E-18 165.0 17.4 201 166-396 168-397 (852)
111 PRK14953 DNA polymerase III su 99.5 4.4E-13 9.5E-18 151.8 19.4 209 164-412 9-241 (486)
112 PRK14965 DNA polymerase III su 99.5 2.1E-13 4.6E-18 157.6 17.2 203 164-411 9-240 (576)
113 PRK05896 DNA polymerase III su 99.5 2.4E-13 5.2E-18 155.3 17.1 203 164-411 9-240 (605)
114 PRK08451 DNA polymerase III su 99.5 3E-13 6.5E-18 153.5 17.5 204 163-411 6-238 (535)
115 PRK08903 DnaA regulatory inact 99.5 6.1E-13 1.3E-17 136.3 18.2 205 164-413 11-224 (227)
116 PRK00440 rfc replication facto 99.5 3.8E-13 8.3E-18 144.2 16.7 204 163-413 9-224 (319)
117 COG1224 TIP49 DNA helicase TIP 99.5 1.1E-12 2.5E-17 137.9 19.2 97 315-414 322-431 (450)
118 PRK08727 hypothetical protein; 99.5 1.9E-12 4E-17 133.7 20.7 209 164-414 12-230 (233)
119 PRK14955 DNA polymerase III su 99.5 4.3E-13 9.4E-18 148.9 17.1 215 163-413 8-255 (397)
120 PRK06305 DNA polymerase III su 99.5 7.5E-13 1.6E-17 148.9 19.0 205 164-413 10-244 (451)
121 PRK06647 DNA polymerase III su 99.5 9E-13 1.9E-17 151.5 19.5 209 164-412 9-241 (563)
122 PRK14087 dnaA chromosomal repl 99.5 8.1E-13 1.8E-17 148.6 17.7 219 167-415 111-348 (450)
123 PRK11034 clpA ATP-dependent Cl 99.5 2.3E-13 5.1E-18 160.7 13.9 173 172-359 459-667 (758)
124 PRK13407 bchI magnesium chelat 99.5 3.5E-13 7.6E-18 145.4 13.8 225 166-416 3-307 (334)
125 TIGR00382 clpX endopeptidase C 99.5 1.4E-12 3E-17 144.1 17.7 183 172-356 78-329 (413)
126 PRK14948 DNA polymerase III su 99.5 1.7E-12 3.7E-17 150.8 19.4 208 163-411 8-241 (620)
127 COG1474 CDC6 Cdc6-related prot 99.5 1.6E-12 3.5E-17 142.2 17.5 211 173-414 19-264 (366)
128 PRK06620 hypothetical protein; 99.5 3.4E-12 7.4E-17 130.0 18.7 199 164-412 9-213 (214)
129 TIGR02639 ClpA ATP-dependent C 99.4 1.2E-12 2.6E-17 155.8 17.5 172 172-359 455-663 (731)
130 PRK14954 DNA polymerase III su 99.4 3.7E-12 8E-17 147.4 20.1 214 164-413 9-255 (620)
131 PRK14950 DNA polymerase III su 99.4 2.9E-12 6.3E-17 148.8 19.1 205 164-413 9-243 (585)
132 PF00308 Bac_DnaA: Bacterial d 99.4 2.5E-12 5.3E-17 131.5 16.0 201 166-395 3-216 (219)
133 COG2812 DnaX DNA polymerase II 99.4 1.2E-12 2.5E-17 147.2 14.8 207 164-410 9-239 (515)
134 CHL00081 chlI Mg-protoporyphyr 99.4 3.4E-12 7.3E-17 138.2 17.3 227 165-417 11-324 (350)
135 TIGR01650 PD_CobS cobaltochela 99.4 2.3E-12 5E-17 137.6 15.6 143 204-359 64-234 (327)
136 PRK05642 DNA replication initi 99.4 1.2E-11 2.5E-16 127.8 19.8 212 164-412 12-232 (234)
137 PRK05201 hslU ATP-dependent pr 99.4 8.6E-13 1.9E-17 144.2 11.8 181 172-355 16-345 (443)
138 PF05673 DUF815: Protein of un 99.4 5.9E-12 1.3E-16 128.6 16.9 193 164-389 20-243 (249)
139 TIGR00390 hslU ATP-dependent p 99.4 1.2E-12 2.7E-17 143.0 12.1 181 172-355 13-343 (441)
140 COG0593 DnaA ATPase involved i 99.4 1.7E-11 3.8E-16 134.2 20.4 223 164-416 80-314 (408)
141 TIGR02903 spore_lon_C ATP-depe 99.4 1.6E-11 3.5E-16 143.0 20.3 223 165-414 148-429 (615)
142 TIGR02030 BchI-ChlI magnesium 99.4 9.4E-12 2E-16 134.6 16.4 224 169-417 2-311 (337)
143 PRK14971 DNA polymerase III su 99.4 1.8E-11 3.9E-16 142.3 19.2 204 164-412 10-243 (614)
144 TIGR02442 Cob-chelat-sub cobal 99.3 1.3E-11 2.9E-16 144.5 16.8 222 169-417 2-306 (633)
145 PHA02244 ATPase-like protein 99.3 2.9E-11 6.2E-16 130.6 17.3 127 205-347 120-263 (383)
146 cd00009 AAA The AAA+ (ATPases 99.3 2.8E-11 6.1E-16 112.5 13.8 124 203-343 18-150 (151)
147 COG0714 MoxR-like ATPases [Gen 99.3 4.1E-11 8.8E-16 129.9 16.5 140 205-356 44-201 (329)
148 TIGR03346 chaperone_ClpB ATP-d 99.3 4.7E-11 1E-15 144.4 18.2 174 171-359 565-777 (852)
149 TIGR03345 VI_ClpV1 type VI sec 99.3 4.1E-11 8.9E-16 144.2 17.2 172 171-359 566-781 (852)
150 PRK10865 protein disaggregatio 99.3 8E-11 1.7E-15 142.0 18.3 174 170-359 567-780 (857)
151 KOG1942 DNA helicase, TBP-inte 99.3 1.7E-10 3.8E-15 118.6 17.1 97 315-414 327-437 (456)
152 PF05621 TniB: Bacterial TniB 99.2 2.4E-10 5.1E-15 120.3 17.5 213 174-410 37-284 (302)
153 PRK09112 DNA polymerase III su 99.2 2.6E-10 5.7E-15 124.3 18.2 187 166-389 18-242 (351)
154 CHL00095 clpC Clp protease ATP 99.2 5.6E-11 1.2E-15 143.3 13.9 139 171-323 509-662 (821)
155 PF06068 TIP49: TIP49 C-termin 99.2 6.7E-11 1.4E-15 126.7 12.9 69 166-241 19-89 (398)
156 PRK09087 hypothetical protein; 99.2 3.6E-10 7.9E-15 116.1 17.6 202 164-414 14-221 (226)
157 PRK13531 regulatory ATPase Rav 99.2 2.7E-10 5.9E-15 127.0 17.7 198 205-416 40-284 (498)
158 TIGR00678 holB DNA polymerase 99.2 2E-10 4.4E-15 114.3 14.7 144 202-378 12-183 (188)
159 PRK07471 DNA polymerase III su 99.2 4.2E-10 9.2E-15 123.4 17.9 175 165-378 13-230 (365)
160 KOG0991 Replication factor C, 99.2 5.1E-11 1.1E-15 119.2 9.5 205 162-413 18-235 (333)
161 PF07728 AAA_5: AAA domain (dy 99.2 3.9E-11 8.5E-16 113.3 8.2 118 206-336 1-139 (139)
162 TIGR00602 rad24 checkpoint pro 99.2 3.2E-10 6.9E-15 131.4 17.0 257 163-457 76-390 (637)
163 COG0542 clpA ATP-binding subun 99.2 8.5E-11 1.8E-15 136.9 11.9 170 171-359 491-706 (786)
164 TIGR03015 pepcterm_ATPase puta 99.2 1.1E-09 2.4E-14 114.7 18.9 189 205-415 44-266 (269)
165 smart00382 AAA ATPases associa 99.2 1.2E-10 2.5E-15 107.1 10.1 122 204-345 2-147 (148)
166 smart00350 MCM minichromosome 99.2 3E-10 6.6E-15 130.0 14.9 196 203-414 235-503 (509)
167 PRK05564 DNA polymerase III su 99.2 6E-10 1.3E-14 120.0 16.3 169 169-378 2-182 (313)
168 TIGR00368 Mg chelatase-related 99.2 4E-10 8.8E-15 127.9 15.1 216 168-413 189-497 (499)
169 COG0470 HolB ATPase involved i 99.1 1.5E-09 3.2E-14 116.5 18.3 156 202-396 22-205 (325)
170 KOG1969 DNA replication checkp 99.1 1E-09 2.3E-14 124.6 17.5 218 163-399 263-519 (877)
171 COG2607 Predicted ATPase (AAA+ 99.1 3.1E-09 6.8E-14 107.2 17.6 194 164-389 53-275 (287)
172 PRK15424 propionate catabolism 99.1 5.5E-10 1.2E-14 127.7 13.5 216 167-408 215-478 (538)
173 TIGR02031 BchD-ChlD magnesium 99.1 1.3E-09 2.8E-14 126.7 16.6 199 204-417 16-260 (589)
174 PRK11331 5-methylcytosine-spec 99.1 6.7E-10 1.4E-14 123.1 13.4 129 204-344 194-357 (459)
175 TIGR00764 lon_rel lon-related 99.1 9.3E-10 2E-14 128.1 15.2 103 311-415 266-391 (608)
176 PF07724 AAA_2: AAA domain (Cd 99.1 1.6E-10 3.4E-15 113.7 7.2 119 204-325 3-132 (171)
177 COG3829 RocR Transcriptional r 99.1 3.5E-10 7.6E-15 125.8 10.3 216 165-409 239-491 (560)
178 KOG0741 AAA+-type ATPase [Post 99.1 1.5E-09 3.3E-14 119.2 15.0 144 203-356 537-684 (744)
179 PRK07399 DNA polymerase III su 99.1 3.1E-09 6.6E-14 114.4 16.2 182 169-389 2-223 (314)
180 COG1219 ClpX ATP-dependent pro 99.1 5E-10 1.1E-14 116.8 9.5 145 172-322 62-228 (408)
181 PRK05707 DNA polymerase III su 99.0 4.1E-09 8.8E-14 114.1 15.9 149 201-378 19-195 (328)
182 TIGR02329 propionate_PrpR prop 99.0 2.3E-09 5E-14 122.7 14.6 218 167-409 208-464 (526)
183 PRK04132 replication factor C 99.0 3.9E-09 8.4E-14 125.5 16.9 170 208-412 568-751 (846)
184 PRK08058 DNA polymerase III su 99.0 3.9E-09 8.5E-14 114.5 15.7 149 169-356 3-180 (329)
185 COG0542 clpA ATP-binding subun 99.0 5.2E-09 1.1E-13 122.3 17.0 204 166-398 165-396 (786)
186 smart00763 AAA_PrkA PrkA AAA d 99.0 2.8E-09 6.1E-14 115.3 13.3 172 169-360 48-329 (361)
187 COG3604 FhlA Transcriptional r 99.0 2.5E-09 5.4E-14 117.7 12.8 209 164-395 216-456 (550)
188 PF07726 AAA_3: ATPase family 99.0 6.6E-11 1.4E-15 109.6 0.4 119 206-336 1-129 (131)
189 PRK05022 anaerobic nitric oxid 99.0 7.6E-09 1.6E-13 118.7 17.2 202 169-396 185-421 (509)
190 PF01078 Mg_chelatase: Magnesi 99.0 5.4E-10 1.2E-14 112.0 6.1 127 169-322 1-158 (206)
191 COG1220 HslU ATP-dependent pro 99.0 4.8E-09 1E-13 110.2 13.1 89 264-355 252-346 (444)
192 TIGR01817 nifA Nif-specific re 99.0 6E-09 1.3E-13 120.3 15.3 217 164-409 189-439 (534)
193 PRK10820 DNA-binding transcrip 99.0 8.8E-09 1.9E-13 118.4 16.1 213 166-408 199-447 (520)
194 TIGR02974 phageshock_pspF psp 99.0 6.3E-09 1.4E-13 112.9 14.0 177 203-395 21-233 (329)
195 PRK09862 putative ATP-dependen 99.0 7.3E-09 1.6E-13 117.4 15.0 217 168-414 188-491 (506)
196 PRK11388 DNA-binding transcrip 99.0 1.1E-08 2.4E-13 120.6 17.1 215 167-411 321-567 (638)
197 COG1221 PspF Transcriptional r 98.9 4.5E-09 9.8E-14 115.1 12.2 206 165-396 72-310 (403)
198 KOG2680 DNA helicase TIP49, TB 98.9 2.6E-08 5.7E-13 103.1 16.7 98 315-415 319-429 (454)
199 PRK15429 formate hydrogenlyase 98.9 1.3E-08 2.9E-13 120.8 16.2 206 166-395 371-609 (686)
200 PRK08116 hypothetical protein; 98.9 3.7E-09 8.1E-14 111.4 10.1 155 167-347 81-251 (268)
201 PRK11608 pspF phage shock prot 98.9 1.6E-08 3.5E-13 109.6 14.8 200 170-395 5-240 (326)
202 PF00158 Sigma54_activat: Sigm 98.9 6.6E-09 1.4E-13 102.0 10.4 118 203-336 21-154 (168)
203 COG2204 AtoC Response regulato 98.9 2E-08 4.3E-13 111.9 14.7 213 167-408 137-384 (464)
204 KOG0745 Putative ATP-dependent 98.9 6E-09 1.3E-13 112.5 9.1 98 205-302 227-335 (564)
205 KOG0990 Replication factor C, 98.8 2.9E-08 6.2E-13 104.1 13.3 191 163-396 33-238 (360)
206 PRK06964 DNA polymerase III su 98.8 2.8E-08 6.1E-13 107.9 13.6 132 202-357 19-203 (342)
207 COG1239 ChlI Mg-chelatase subu 98.8 4.8E-08 1.1E-12 106.3 14.8 167 167-359 13-233 (423)
208 KOG1514 Origin recognition com 98.8 7.2E-08 1.6E-12 109.8 16.7 192 206-416 424-656 (767)
209 PF13177 DNA_pol3_delta2: DNA 98.8 4.1E-08 9E-13 95.8 12.3 134 175-345 1-161 (162)
210 COG0606 Predicted ATPase with 98.8 9.7E-09 2.1E-13 113.1 8.3 218 167-413 175-483 (490)
211 PRK08769 DNA polymerase III su 98.8 1.7E-07 3.8E-12 100.9 17.2 131 202-356 24-183 (319)
212 TIGR02915 PEP_resp_reg putativ 98.8 5.2E-08 1.1E-12 109.8 12.8 211 169-408 137-382 (445)
213 PRK13765 ATP-dependent proteas 98.7 5.6E-08 1.2E-12 113.3 12.8 101 312-414 276-399 (637)
214 PRK07993 DNA polymerase III su 98.7 2.1E-07 4.6E-12 101.1 16.5 129 202-356 22-178 (334)
215 PTZ00111 DNA replication licen 98.7 1.4E-07 3E-12 112.1 15.9 137 202-353 490-652 (915)
216 PRK06871 DNA polymerase III su 98.7 3.8E-07 8.3E-12 98.4 17.5 129 202-357 22-178 (325)
217 PRK07952 DNA replication prote 98.7 8.8E-08 1.9E-12 99.4 12.1 132 165-323 66-205 (244)
218 PRK10923 glnG nitrogen regulat 98.7 1.9E-07 4.1E-12 106.1 14.9 210 169-409 136-382 (469)
219 PRK12377 putative replication 98.7 1.1E-07 2.5E-12 98.9 11.8 131 166-323 69-206 (248)
220 PRK11361 acetoacetate metaboli 98.7 2.7E-07 5.8E-12 104.3 15.8 187 204-409 166-387 (457)
221 PRK08939 primosomal protein Dn 98.7 8.5E-08 1.8E-12 102.9 11.1 101 167-274 123-229 (306)
222 PRK08181 transposase; Validate 98.7 1E-07 2.2E-12 100.4 10.7 86 204-296 106-196 (269)
223 PRK06526 transposase; Provisio 98.6 5.9E-08 1.3E-12 101.5 7.5 99 204-323 98-201 (254)
224 KOG1051 Chaperone HSP104 and r 98.6 1.6E-07 3.4E-12 111.4 11.6 138 172-323 563-711 (898)
225 PRK06090 DNA polymerase III su 98.6 7.1E-07 1.5E-11 96.1 15.4 130 201-356 22-178 (319)
226 PRK13406 bchD magnesium chelat 98.6 6.6E-07 1.4E-11 103.6 16.1 199 205-417 26-252 (584)
227 PRK08699 DNA polymerase III su 98.6 3.1E-07 6.7E-12 99.4 12.6 131 202-356 19-183 (325)
228 PRK15115 response regulator Gl 98.6 1.2E-06 2.7E-11 98.7 16.3 186 204-410 157-379 (444)
229 TIGR01818 ntrC nitrogen regula 98.6 6.1E-07 1.3E-11 101.6 13.8 212 170-412 133-381 (463)
230 KOG2227 Pre-initiation complex 98.6 2.1E-06 4.5E-11 94.3 17.1 200 172-398 151-382 (529)
231 COG1484 DnaC DNA replication p 98.6 3.3E-07 7.2E-12 95.9 10.6 98 167-274 75-179 (254)
232 PF03215 Rad17: Rad17 cell cyc 98.5 1.3E-06 2.8E-11 99.9 16.1 205 163-396 11-269 (519)
233 PRK06921 hypothetical protein; 98.5 6.6E-07 1.4E-11 94.3 12.4 69 203-273 116-188 (266)
234 PRK06835 DNA replication prote 98.5 2.1E-07 4.5E-12 100.8 8.4 69 204-274 183-258 (329)
235 PF13173 AAA_14: AAA domain 98.5 1E-06 2.2E-11 82.3 11.5 118 205-349 3-126 (128)
236 PF01637 Arch_ATPase: Archaeal 98.5 8.6E-07 1.9E-11 89.7 10.9 165 204-385 20-232 (234)
237 PRK09183 transposase/IS protei 98.5 6.1E-07 1.3E-11 94.2 9.7 72 203-275 101-177 (259)
238 KOG2035 Replication factor C, 98.4 3.3E-06 7.1E-11 87.2 14.2 176 164-378 6-220 (351)
239 PF01695 IstB_IS21: IstB-like 98.4 2.4E-07 5.1E-12 91.9 5.9 70 203-274 46-120 (178)
240 PRK10365 transcriptional regul 98.4 2.4E-06 5.1E-11 96.1 14.6 186 204-410 162-384 (441)
241 PF14532 Sigma54_activ_2: Sigm 98.4 6.2E-07 1.3E-11 84.9 6.1 59 204-275 21-82 (138)
242 PF13401 AAA_22: AAA domain; P 98.3 2.8E-06 6.1E-11 78.7 9.9 85 204-297 4-113 (131)
243 PF12775 AAA_7: P-loop contain 98.3 5.5E-06 1.2E-10 87.6 12.6 142 204-359 33-194 (272)
244 KOG1970 Checkpoint RAD17-RFC c 98.2 4.2E-05 9E-10 85.7 17.7 205 164-395 75-320 (634)
245 cd01120 RecA-like_NTPases RecA 98.2 1.2E-05 2.7E-10 76.4 12.0 70 207-276 2-99 (165)
246 PF12774 AAA_6: Hydrolytic ATP 98.2 1.3E-05 2.8E-10 82.8 12.1 135 204-354 32-176 (231)
247 PF03969 AFG1_ATPase: AFG1-lik 98.2 6.9E-06 1.5E-10 90.1 9.8 140 201-372 59-207 (362)
248 PRK05917 DNA polymerase III su 98.1 3.7E-05 8.1E-10 81.6 14.0 118 202-345 17-154 (290)
249 PF05729 NACHT: NACHT domain 98.1 2.4E-05 5.2E-10 74.9 11.4 139 205-360 1-165 (166)
250 TIGR02237 recomb_radB DNA repa 98.1 1.9E-05 4.2E-10 79.7 11.1 77 200-276 8-111 (209)
251 COG3283 TyrR Transcriptional r 98.1 2.1E-05 4.6E-10 83.8 10.6 176 206-395 229-432 (511)
252 COG1241 MCM2 Predicted ATPase 98.1 1.2E-05 2.7E-10 93.6 9.6 129 204-348 319-473 (682)
253 PRK07276 DNA polymerase III su 98.0 0.00016 3.5E-09 77.0 16.8 127 202-355 22-172 (290)
254 cd01124 KaiC KaiC is a circadi 98.0 4.4E-05 9.5E-10 75.3 11.7 89 207-298 2-128 (187)
255 COG3267 ExeA Type II secretory 98.0 0.00022 4.8E-09 73.5 16.7 182 206-408 53-266 (269)
256 PF00931 NB-ARC: NB-ARC domain 98.0 6.2E-05 1.3E-09 79.4 13.4 171 181-387 3-202 (287)
257 PF00493 MCM: MCM2/3/5 family 98.0 1.4E-05 3E-10 87.0 7.6 196 203-414 56-325 (331)
258 PRK05818 DNA polymerase III su 98.0 0.00026 5.6E-09 73.9 16.0 120 202-345 5-147 (261)
259 PLN03210 Resistant to P. syrin 97.9 7.2E-05 1.6E-09 94.2 14.2 176 166-380 179-389 (1153)
260 PRK11823 DNA repair protein Ra 97.9 4.2E-05 9.1E-10 86.5 10.3 77 200-276 76-170 (446)
261 cd01121 Sms Sms (bacterial rad 97.9 5.1E-05 1.1E-09 83.7 10.4 77 200-276 78-172 (372)
262 KOG0480 DNA replication licens 97.9 3.2E-05 7E-10 87.6 8.5 229 169-414 343-642 (764)
263 PRK07132 DNA polymerase III su 97.9 0.0004 8.6E-09 74.5 16.2 127 202-356 16-160 (299)
264 KOG1968 Replication factor C, 97.8 7.5E-05 1.6E-09 89.6 10.8 204 164-394 313-535 (871)
265 PF13191 AAA_16: AAA ATPase do 97.8 3.4E-05 7.4E-10 75.6 6.4 39 202-240 22-63 (185)
266 PF00910 RNA_helicase: RNA hel 97.8 3.2E-05 6.9E-10 70.1 5.3 23 207-229 1-23 (107)
267 PRK09361 radB DNA repair and r 97.8 0.00014 3E-09 74.4 10.6 76 200-276 19-121 (225)
268 COG3284 AcoR Transcriptional a 97.8 4.1E-05 8.8E-10 87.4 6.9 188 204-412 336-554 (606)
269 PHA00729 NTP-binding motif con 97.7 4.8E-05 1.1E-09 77.8 6.3 26 205-230 18-43 (226)
270 COG1485 Predicted ATPase [Gene 97.7 0.00013 2.7E-09 78.4 9.5 163 176-370 30-208 (367)
271 TIGR02012 tigrfam_recA protein 97.7 0.00022 4.7E-09 77.0 11.0 78 200-277 51-148 (321)
272 cd01394 radB RadB. The archaea 97.7 0.0004 8.7E-09 70.7 12.0 40 200-239 15-57 (218)
273 PF05707 Zot: Zonular occluden 97.7 5.7E-05 1.2E-09 75.8 5.6 123 207-346 3-147 (193)
274 TIGR01618 phage_P_loop phage n 97.7 0.00014 3.1E-09 74.4 8.5 72 203-276 11-95 (220)
275 PRK08533 flagellar accessory p 97.6 0.00058 1.2E-08 70.6 12.8 76 200-275 20-130 (230)
276 KOG0478 DNA replication licens 97.6 0.0014 3.1E-08 75.2 16.8 137 204-355 462-623 (804)
277 PF13207 AAA_17: AAA domain; P 97.6 4.1E-05 8.8E-10 70.1 3.7 30 207-236 2-31 (121)
278 KOG2383 Predicted ATPase [Gene 97.6 0.0002 4.3E-09 77.7 9.1 157 202-393 112-298 (467)
279 KOG2170 ATPase of the AAA+ sup 97.6 0.00032 6.9E-09 73.7 10.1 97 173-275 84-191 (344)
280 PF06745 KaiC: KaiC; InterPro 97.6 0.00052 1.1E-08 70.3 11.7 98 199-298 14-149 (226)
281 PRK06067 flagellar accessory p 97.6 0.00037 8E-09 71.9 10.6 40 200-239 21-63 (234)
282 TIGR00416 sms DNA repair prote 97.6 0.00031 6.7E-09 79.6 10.5 77 200-276 90-184 (454)
283 cd01123 Rad51_DMC1_radA Rad51_ 97.6 0.00049 1.1E-08 70.7 10.8 100 200-299 15-155 (235)
284 cd00983 recA RecA is a bacter 97.5 0.00049 1.1E-08 74.4 10.8 78 200-277 51-148 (325)
285 PF05272 VirE: Virulence-assoc 97.5 0.00059 1.3E-08 68.9 10.8 120 200-344 48-169 (198)
286 cd01393 recA_like RecA is a b 97.5 0.00055 1.2E-08 69.9 10.5 100 200-299 15-154 (226)
287 PF07693 KAP_NTPase: KAP famil 97.5 0.0033 7.1E-08 67.7 17.0 28 202-229 18-45 (325)
288 PRK00131 aroK shikimate kinase 97.5 9.6E-05 2.1E-09 71.8 4.5 33 203-235 3-35 (175)
289 TIGR02688 conserved hypothetic 97.5 0.0071 1.5E-07 67.2 19.3 215 181-460 197-418 (449)
290 PF14516 AAA_35: AAA-like doma 97.5 0.0058 1.3E-07 66.6 18.6 173 204-390 31-242 (331)
291 COG1373 Predicted ATPase (AAA+ 97.5 0.006 1.3E-07 68.2 18.9 124 206-353 39-162 (398)
292 KOG0482 DNA replication licens 97.5 0.00056 1.2E-08 76.0 10.2 231 172-416 343-639 (721)
293 PRK08118 topology modulation p 97.4 0.00026 5.7E-09 69.4 6.7 33 206-238 3-35 (167)
294 cd03283 ABC_MutS-like MutS-lik 97.4 0.00089 1.9E-08 67.6 10.0 103 205-326 26-151 (199)
295 COG5245 DYN1 Dynein, heavy cha 97.4 0.0012 2.6E-08 80.7 12.2 186 201-395 1491-1716(3164)
296 TIGR03877 thermo_KaiC_1 KaiC d 97.4 0.0016 3.5E-08 67.4 11.8 40 200-239 17-59 (237)
297 KOG2543 Origin recognition com 97.4 0.0023 5.1E-08 69.3 12.9 136 202-357 28-192 (438)
298 COG5271 MDN1 AAA ATPase contai 97.3 0.00086 1.9E-08 82.5 10.4 143 203-359 1542-1704(4600)
299 PHA02624 large T antigen; Prov 97.3 0.0001 2.2E-09 84.5 2.6 129 200-343 427-560 (647)
300 PRK05973 replicative DNA helic 97.3 0.0025 5.4E-08 66.1 12.3 40 200-239 60-102 (237)
301 PF06309 Torsin: Torsin; Inte 97.3 0.0013 2.7E-08 61.4 8.9 65 172-242 26-98 (127)
302 TIGR02858 spore_III_AA stage I 97.3 0.00083 1.8E-08 71.0 8.9 67 205-271 112-203 (270)
303 PHA02774 E1; Provisional 97.3 0.0019 4.1E-08 74.0 11.8 38 200-237 430-468 (613)
304 PRK05800 cobU adenosylcobinami 97.3 0.0027 5.8E-08 62.6 11.4 90 206-298 3-114 (170)
305 PRK09354 recA recombinase A; P 97.3 0.0015 3.2E-08 71.2 10.5 77 200-276 56-152 (349)
306 COG1618 Predicted nucleotide k 97.2 0.0017 3.6E-08 62.7 9.4 27 202-228 3-29 (179)
307 KOG0477 DNA replication licens 97.2 0.0014 3E-08 74.5 10.0 61 173-235 451-513 (854)
308 PRK07261 topology modulation p 97.2 0.00062 1.4E-08 67.0 6.7 34 206-239 2-35 (171)
309 TIGR03880 KaiC_arch_3 KaiC dom 97.2 0.0034 7.4E-08 64.2 12.2 98 200-298 12-142 (224)
310 cd00984 DnaB_C DnaB helicase C 97.2 0.002 4.4E-08 66.4 10.5 40 200-239 9-52 (242)
311 PRK04296 thymidine kinase; Pro 97.2 0.0014 3.1E-08 65.5 9.0 69 206-274 4-90 (190)
312 cd01122 GP4d_helicase GP4d_hel 97.2 0.002 4.4E-08 67.7 10.5 40 200-239 26-69 (271)
313 PTZ00202 tuzin; Provisional 97.2 0.031 6.8E-07 62.4 19.8 205 167-416 258-483 (550)
314 PRK14722 flhF flagellar biosyn 97.2 0.0011 2.4E-08 73.1 8.3 110 202-330 135-266 (374)
315 KOG1051 Chaperone HSP104 and r 97.2 0.005 1.1E-07 74.0 14.4 160 170-358 185-363 (898)
316 PRK13947 shikimate kinase; Pro 97.2 0.00038 8.2E-09 67.8 4.2 31 206-236 3-33 (171)
317 KOG2228 Origin recognition com 97.2 0.0029 6.2E-08 67.6 10.9 136 204-358 49-219 (408)
318 TIGR03878 thermo_KaiC_2 KaiC d 97.2 0.0039 8.6E-08 65.5 12.0 40 200-239 32-74 (259)
319 PF13671 AAA_33: AAA domain; P 97.1 0.00034 7.5E-09 65.8 3.5 29 207-237 2-30 (143)
320 PRK03839 putative kinase; Prov 97.1 0.00039 8.3E-09 68.6 3.9 31 206-236 2-32 (180)
321 cd03238 ABC_UvrA The excision 97.1 0.0019 4.1E-08 64.0 8.8 117 202-344 19-163 (176)
322 PF00437 T2SE: Type II/IV secr 97.1 0.00062 1.4E-08 71.7 5.7 98 165-272 98-207 (270)
323 PRK00625 shikimate kinase; Pro 97.1 0.00045 9.9E-09 68.2 4.2 31 206-236 2-32 (173)
324 cd00464 SK Shikimate kinase (S 97.1 0.00044 9.5E-09 65.9 4.0 31 206-236 1-31 (154)
325 COG4650 RtcR Sigma54-dependent 97.1 0.00093 2E-08 69.8 6.3 75 201-275 205-295 (531)
326 PRK15455 PrkA family serine pr 97.1 0.00053 1.1E-08 78.5 4.9 64 168-237 73-137 (644)
327 cd03216 ABC_Carb_Monos_I This 97.1 0.0023 5E-08 62.3 8.8 106 202-326 24-145 (163)
328 PRK06762 hypothetical protein; 97.1 0.0013 2.7E-08 64.0 6.9 38 204-241 2-39 (166)
329 PRK04301 radA DNA repair and r 97.1 0.0028 6.1E-08 68.6 10.3 40 200-239 98-146 (317)
330 KOG3347 Predicted nucleotide k 97.1 0.00042 9.1E-09 65.9 3.3 32 205-236 8-39 (176)
331 PLN02200 adenylate kinase fami 97.1 0.00069 1.5E-08 70.2 5.3 41 200-242 39-79 (234)
332 PF13604 AAA_30: AAA domain; P 97.1 0.00086 1.9E-08 67.5 5.8 84 205-298 19-119 (196)
333 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.1 0.0023 5E-08 61.1 8.5 89 202-296 24-116 (144)
334 cd01128 rho_factor Transcripti 97.1 0.0018 3.9E-08 67.7 8.2 27 204-230 16-42 (249)
335 TIGR01359 UMP_CMP_kin_fam UMP- 97.0 0.00049 1.1E-08 67.8 3.9 34 207-242 2-35 (183)
336 cd00544 CobU Adenosylcobinamid 97.0 0.0064 1.4E-07 59.8 11.6 92 207-298 2-114 (169)
337 cd03281 ABC_MSH5_euk MutS5 hom 97.0 0.0041 9E-08 63.4 10.7 111 204-330 29-161 (213)
338 cd03247 ABCC_cytochrome_bd The 97.0 0.0036 7.8E-08 61.7 9.7 105 202-326 26-160 (178)
339 cd00267 ABC_ATPase ABC (ATP-bi 97.0 0.0034 7.4E-08 60.5 9.3 106 203-327 24-144 (157)
340 TIGR02238 recomb_DMC1 meiotic 97.0 0.0034 7.4E-08 67.8 10.2 100 200-299 92-231 (313)
341 cd01131 PilT Pilus retraction 97.0 0.0011 2.4E-08 66.8 6.1 66 206-271 3-83 (198)
342 PRK13949 shikimate kinase; Pro 97.0 0.00063 1.4E-08 66.9 4.0 32 205-236 2-33 (169)
343 PRK14532 adenylate kinase; Pro 97.0 0.00062 1.4E-08 67.6 4.0 36 206-243 2-37 (188)
344 COG1116 TauB ABC-type nitrate/ 97.0 0.0048 1E-07 63.7 10.5 24 204-227 29-52 (248)
345 TIGR02236 recomb_radA DNA repa 97.0 0.0041 8.9E-08 67.0 10.6 40 200-239 91-139 (310)
346 PRK04328 hypothetical protein; 97.0 0.0065 1.4E-07 63.5 11.8 40 200-239 19-61 (249)
347 PRK14531 adenylate kinase; Pro 97.0 0.00074 1.6E-08 67.0 4.4 36 205-242 3-38 (183)
348 cd03228 ABCC_MRP_Like The MRP 97.0 0.0064 1.4E-07 59.5 10.9 106 202-327 26-159 (171)
349 COG0703 AroK Shikimate kinase 97.0 0.0011 2.4E-08 65.1 5.3 32 205-236 3-34 (172)
350 PRK04841 transcriptional regul 97.0 0.014 3E-07 71.7 16.2 151 204-380 32-219 (903)
351 PRK13833 conjugal transfer pro 96.9 0.0017 3.7E-08 70.3 7.1 69 204-272 144-225 (323)
352 PRK09519 recA DNA recombinatio 96.9 0.0045 9.8E-08 73.9 11.2 77 200-276 56-152 (790)
353 cd02020 CMPK Cytidine monophos 96.9 0.00074 1.6E-08 63.6 3.8 30 207-236 2-31 (147)
354 cd01130 VirB11-like_ATPase Typ 96.9 0.0017 3.7E-08 64.7 6.5 69 204-272 25-110 (186)
355 cd03223 ABCD_peroxisomal_ALDP 96.9 0.011 2.4E-07 57.8 11.9 89 202-296 25-137 (166)
356 PRK06696 uridine kinase; Valid 96.9 0.0016 3.5E-08 66.7 6.4 40 203-242 21-63 (223)
357 PTZ00088 adenylate kinase 1; P 96.9 0.00093 2E-08 69.0 4.6 33 203-235 5-37 (229)
358 PRK09376 rho transcription ter 96.9 0.0022 4.8E-08 70.6 7.5 22 207-228 172-193 (416)
359 PRK06547 hypothetical protein; 96.9 0.0015 3.2E-08 64.5 5.7 34 202-235 13-46 (172)
360 cd00227 CPT Chloramphenicol (C 96.9 0.00076 1.6E-08 66.4 3.7 36 205-240 3-38 (175)
361 TIGR02782 TrbB_P P-type conjug 96.9 0.002 4.4E-08 69.2 7.1 69 204-272 132-214 (299)
362 PRK06217 hypothetical protein; 96.9 0.0009 2E-08 66.4 4.1 31 206-236 3-33 (183)
363 cd01428 ADK Adenylate kinase ( 96.9 0.00085 1.8E-08 66.6 3.8 33 207-241 2-34 (194)
364 PRK12339 2-phosphoglycerate ki 96.9 0.021 4.6E-07 57.6 13.9 29 204-232 3-31 (197)
365 PRK13894 conjugal transfer ATP 96.9 0.0016 3.6E-08 70.5 6.2 69 204-272 148-229 (319)
366 PF10236 DAP3: Mitochondrial r 96.8 0.045 9.7E-07 59.1 17.1 126 251-385 142-307 (309)
367 COG4619 ABC-type uncharacteriz 96.8 0.0045 9.7E-08 60.3 8.3 26 202-227 27-52 (223)
368 TIGR02655 circ_KaiC circadian 96.8 0.0064 1.4E-07 69.7 11.2 77 200-276 259-367 (484)
369 cd03246 ABCC_Protease_Secretio 96.8 0.0084 1.8E-07 58.8 10.6 88 203-296 27-142 (173)
370 cd02021 GntK Gluconate kinase 96.8 0.00095 2.1E-08 63.6 3.7 33 207-241 2-34 (150)
371 PRK13948 shikimate kinase; Pro 96.8 0.0013 2.9E-08 65.5 4.6 35 202-236 8-42 (182)
372 PTZ00035 Rad51 protein; Provis 96.8 0.0072 1.6E-07 66.0 10.7 99 200-298 114-252 (337)
373 PRK14530 adenylate kinase; Pro 96.8 0.0011 2.5E-08 67.4 4.2 30 206-235 5-34 (215)
374 PLN03187 meiotic recombination 96.8 0.0075 1.6E-07 65.9 10.7 100 200-299 122-261 (344)
375 cd00046 DEXDc DEAD-like helica 96.8 0.0035 7.6E-08 57.0 6.8 24 205-228 1-24 (144)
376 PRK13764 ATPase; Provisional 96.8 0.002 4.3E-08 75.0 6.2 70 203-272 256-334 (602)
377 cd02027 APSK Adenosine 5'-phos 96.8 0.0047 1E-07 59.3 7.8 34 207-240 2-38 (149)
378 cd03243 ABC_MutS_homologs The 96.7 0.0059 1.3E-07 61.5 8.9 22 205-226 30-51 (202)
379 COG1102 Cmk Cytidylate kinase 96.7 0.0012 2.6E-08 63.7 3.6 28 207-234 3-30 (179)
380 cd03222 ABC_RNaseL_inhibitor T 96.7 0.0068 1.5E-07 60.1 9.1 88 203-296 24-117 (177)
381 PRK13695 putative NTPase; Prov 96.7 0.021 4.5E-07 56.1 12.4 23 206-228 2-24 (174)
382 TIGR02655 circ_KaiC circadian 96.7 0.0064 1.4E-07 69.7 10.0 44 200-243 17-64 (484)
383 TIGR01313 therm_gnt_kin carboh 96.7 0.0011 2.4E-08 64.1 3.3 32 207-240 1-32 (163)
384 TIGR01613 primase_Cterm phage/ 96.7 0.0047 1E-07 66.4 8.4 143 178-343 56-202 (304)
385 TIGR01420 pilT_fam pilus retra 96.7 0.0034 7.4E-08 68.7 7.4 68 205-272 123-205 (343)
386 PRK14528 adenylate kinase; Pro 96.7 0.0015 3.2E-08 65.2 4.1 31 205-235 2-32 (186)
387 PRK13946 shikimate kinase; Pro 96.7 0.0016 3.5E-08 64.7 4.3 34 203-236 9-42 (184)
388 COG3854 SpoIIIAA ncharacterize 96.7 0.0022 4.7E-08 65.3 5.2 70 204-273 137-229 (308)
389 PRK05057 aroK shikimate kinase 96.7 0.0017 3.7E-08 64.0 4.3 33 204-236 4-36 (172)
390 PRK09302 circadian clock prote 96.7 0.013 2.8E-07 67.6 12.3 41 200-240 27-71 (509)
391 PRK03731 aroL shikimate kinase 96.7 0.0017 3.8E-08 63.3 4.4 31 205-235 3-33 (171)
392 PLN03186 DNA repair protein RA 96.7 0.0076 1.6E-07 65.9 9.6 100 200-299 119-258 (342)
393 PRK00771 signal recognition pa 96.7 0.012 2.7E-07 66.3 11.5 39 202-240 93-134 (437)
394 PRK06581 DNA polymerase III su 96.7 0.045 9.7E-07 56.6 14.4 135 202-360 13-163 (263)
395 KOG0481 DNA replication licens 96.7 0.021 4.5E-07 64.0 12.7 29 204-232 364-392 (729)
396 cd03227 ABC_Class2 ABC-type Cl 96.7 0.0062 1.3E-07 59.2 8.0 22 204-225 21-42 (162)
397 PF00448 SRP54: SRP54-type pro 96.6 0.019 4.1E-07 57.9 11.6 36 204-239 1-39 (196)
398 PRK13900 type IV secretion sys 96.6 0.0029 6.3E-08 69.0 6.0 70 203-272 159-245 (332)
399 PF06480 FtsH_ext: FtsH Extrac 96.6 0.0016 3.5E-08 58.2 3.3 66 35-100 27-108 (110)
400 cd03230 ABC_DR_subfamily_A Thi 96.6 0.011 2.5E-07 57.9 9.6 105 203-326 25-158 (173)
401 TIGR01360 aden_kin_iso1 adenyl 96.6 0.0019 4.1E-08 63.6 4.1 28 206-233 5-32 (188)
402 PRK14974 cell division protein 96.6 0.019 4.1E-07 62.6 12.1 37 203-239 139-178 (336)
403 cd01125 repA Hexameric Replica 96.6 0.017 3.8E-07 59.7 11.4 33 207-239 4-51 (239)
404 TIGR03881 KaiC_arch_4 KaiC dom 96.6 0.004 8.7E-08 63.8 6.6 71 200-271 16-89 (229)
405 TIGR02239 recomb_RAD51 DNA rep 96.6 0.0095 2.1E-07 64.5 9.7 100 200-299 92-231 (316)
406 TIGR01351 adk adenylate kinase 96.6 0.0018 3.9E-08 65.7 3.9 29 207-235 2-30 (210)
407 COG2274 SunT ABC-type bacterio 96.6 0.01 2.3E-07 70.7 10.8 70 248-344 613-682 (709)
408 PRK14527 adenylate kinase; Pro 96.6 0.0017 3.6E-08 64.9 3.5 32 203-234 5-36 (191)
409 COG1066 Sms Predicted ATP-depe 96.6 0.01 2.2E-07 65.1 9.7 76 203-278 92-184 (456)
410 TIGR00767 rho transcription te 96.6 0.0063 1.4E-07 67.4 8.2 25 205-229 169-193 (415)
411 PRK08154 anaerobic benzoate ca 96.6 0.0031 6.8E-08 68.0 5.7 34 201-234 130-163 (309)
412 PF13245 AAA_19: Part of AAA d 96.6 0.0034 7.3E-08 53.5 4.8 31 206-236 12-49 (76)
413 PRK02496 adk adenylate kinase; 96.6 0.0021 4.5E-08 63.6 4.1 30 206-235 3-32 (184)
414 PF09848 DUF2075: Uncharacteri 96.6 0.0068 1.5E-07 66.5 8.5 23 206-228 3-25 (352)
415 PRK04040 adenylate kinase; Pro 96.6 0.0022 4.8E-08 64.2 4.2 30 204-233 2-33 (188)
416 PF06414 Zeta_toxin: Zeta toxi 96.6 0.0059 1.3E-07 61.4 7.3 42 202-243 13-55 (199)
417 smart00534 MUTSac ATPase domai 96.5 0.016 3.4E-07 57.7 10.2 19 207-225 2-20 (185)
418 cd01129 PulE-GspE PulE/GspE Th 96.5 0.0052 1.1E-07 64.8 6.9 67 206-272 82-159 (264)
419 COG0563 Adk Adenylate kinase a 96.5 0.0025 5.4E-08 63.3 4.2 34 206-241 2-35 (178)
420 PF13481 AAA_25: AAA domain; P 96.5 0.0098 2.1E-07 59.0 8.5 72 206-277 34-156 (193)
421 COG4178 ABC-type uncharacteriz 96.5 0.012 2.6E-07 68.2 10.2 26 201-226 416-441 (604)
422 PRK00279 adk adenylate kinase; 96.5 0.0023 4.9E-08 65.2 4.0 33 207-241 3-35 (215)
423 PRK10536 hypothetical protein; 96.5 0.0092 2E-07 62.4 8.4 22 206-227 76-97 (262)
424 PLN02674 adenylate kinase 96.5 0.0044 9.6E-08 64.5 6.1 39 202-242 29-67 (244)
425 COG1936 Predicted nucleotide k 96.5 0.0017 3.7E-08 63.4 2.8 30 206-236 2-31 (180)
426 cd02019 NK Nucleoside/nucleoti 96.5 0.0087 1.9E-07 49.7 6.7 31 207-237 2-33 (69)
427 PRK12723 flagellar biosynthesi 96.5 0.022 4.8E-07 63.3 11.8 111 202-330 172-306 (388)
428 PF12780 AAA_8: P-loop contain 96.5 0.012 2.6E-07 62.2 9.2 176 172-361 9-213 (268)
429 cd03280 ABC_MutS2 MutS2 homolo 96.5 0.02 4.4E-07 57.6 10.6 21 205-225 29-49 (200)
430 COG5271 MDN1 AAA ATPase contai 96.5 0.0075 1.6E-07 74.8 8.2 144 205-359 889-1048(4600)
431 COG0467 RAD55 RecA-superfamily 96.4 0.0053 1.1E-07 64.4 6.4 44 200-243 19-65 (260)
432 TIGR01526 nadR_NMN_Atrans nico 96.4 0.0058 1.3E-07 66.4 6.8 70 204-274 162-243 (325)
433 TIGR02788 VirB11 P-type DNA tr 96.4 0.0044 9.5E-08 66.9 5.6 72 201-272 141-228 (308)
434 PRK12724 flagellar biosynthesi 96.4 0.031 6.8E-07 62.4 12.3 37 203-239 222-262 (432)
435 PRK01184 hypothetical protein; 96.4 0.0029 6.2E-08 62.6 3.8 29 206-235 3-31 (184)
436 COG2804 PulE Type II secretory 96.4 0.0072 1.6E-07 68.1 7.3 70 203-272 256-337 (500)
437 PF01745 IPT: Isopentenyl tran 96.4 0.0061 1.3E-07 61.7 6.0 87 206-301 3-89 (233)
438 PRK13851 type IV secretion sys 96.4 0.0039 8.4E-08 68.2 5.0 72 201-272 159-246 (344)
439 PRK09302 circadian clock prote 96.4 0.029 6.3E-07 64.7 12.3 77 200-276 269-377 (509)
440 PF13238 AAA_18: AAA domain; P 96.3 0.0028 6.1E-08 58.0 3.2 22 207-228 1-22 (129)
441 TIGR03574 selen_PSTK L-seryl-t 96.3 0.0089 1.9E-07 62.3 7.3 34 207-240 2-38 (249)
442 PF13479 AAA_24: AAA domain 96.3 0.007 1.5E-07 61.7 6.3 67 204-274 3-80 (213)
443 cd03282 ABC_MSH4_euk MutS4 hom 96.3 0.024 5.2E-07 57.5 10.1 23 204-226 29-51 (204)
444 PF13521 AAA_28: AAA domain; P 96.3 0.0031 6.8E-08 61.1 3.5 32 207-239 2-33 (163)
445 TIGR00150 HI0065_YjeE ATPase, 96.3 0.0061 1.3E-07 57.6 5.3 29 203-231 21-49 (133)
446 cd03214 ABC_Iron-Siderophores_ 96.3 0.023 5E-07 56.1 9.7 106 203-326 24-161 (180)
447 PRK11889 flhF flagellar biosyn 96.3 0.036 7.8E-07 61.4 11.8 37 203-239 240-279 (436)
448 PF04665 Pox_A32: Poxvirus A32 96.3 0.045 9.7E-07 56.9 11.9 131 202-357 11-169 (241)
449 PRK04182 cytidylate kinase; Pr 96.3 0.0039 8.5E-08 60.9 4.0 29 206-234 2-30 (180)
450 PF00406 ADK: Adenylate kinase 96.3 0.0034 7.3E-08 60.1 3.4 33 209-243 1-33 (151)
451 cd03115 SRP The signal recogni 96.3 0.015 3.2E-07 56.9 8.0 35 206-240 2-39 (173)
452 PHA02530 pseT polynucleotide k 96.2 0.0041 9E-08 66.4 4.3 35 204-240 2-37 (300)
453 TIGR03499 FlhF flagellar biosy 96.2 0.017 3.7E-07 61.5 8.9 38 203-240 193-235 (282)
454 cd03229 ABC_Class3 This class 96.2 0.023 4.9E-07 56.0 9.1 89 203-297 25-147 (178)
455 cd03213 ABCG_EPDR ABCG transpo 96.2 0.031 6.7E-07 56.0 10.1 27 202-228 33-59 (194)
456 PF08423 Rad51: Rad51; InterP 96.2 0.018 3.8E-07 60.6 8.6 101 200-300 34-174 (256)
457 TIGR02173 cyt_kin_arch cytidyl 96.2 0.0046 1E-07 59.9 4.0 29 206-234 2-30 (171)
458 PRK11176 lipid transporter ATP 96.2 0.028 6E-07 65.9 11.0 28 201-228 366-393 (582)
459 PRK08233 hypothetical protein; 96.1 0.0066 1.4E-07 59.4 4.9 34 205-238 4-38 (182)
460 TIGR02525 plasmid_TraJ plasmid 96.1 0.012 2.6E-07 65.1 7.3 67 206-272 151-235 (372)
461 PF08298 AAA_PrkA: PrkA AAA do 96.1 0.011 2.5E-07 64.1 6.9 82 169-257 58-143 (358)
462 PRK10867 signal recognition pa 96.1 0.027 5.8E-07 63.5 10.0 72 202-273 98-194 (433)
463 PRK12608 transcription termina 96.1 0.018 4E-07 63.3 8.5 23 206-228 135-157 (380)
464 PRK14526 adenylate kinase; Pro 96.1 0.0051 1.1E-07 62.7 4.0 34 206-241 2-35 (211)
465 PLN02199 shikimate kinase 96.1 0.0091 2E-07 63.6 5.9 32 205-236 103-134 (303)
466 PRK11174 cysteine/glutathione 96.1 0.029 6.2E-07 65.8 10.6 28 201-228 373-400 (588)
467 PF13086 AAA_11: AAA domain; P 96.1 0.0087 1.9E-07 60.4 5.4 23 206-228 19-41 (236)
468 PRK08099 bifunctional DNA-bind 96.0 0.012 2.6E-07 65.8 6.8 37 203-239 218-254 (399)
469 PLN02459 probable adenylate ki 96.0 0.0068 1.5E-07 63.6 4.6 35 205-241 30-64 (261)
470 COG2874 FlaH Predicted ATPases 96.0 0.034 7.3E-07 56.3 9.2 116 200-332 24-176 (235)
471 PTZ00494 tuzin-like protein; P 96.0 0.89 1.9E-05 51.0 20.7 183 198-416 389-593 (664)
472 PF01583 APS_kinase: Adenylyls 96.0 0.016 3.5E-07 56.2 6.7 39 204-242 2-43 (156)
473 cd03232 ABC_PDR_domain2 The pl 96.0 0.019 4E-07 57.4 7.4 25 203-227 32-56 (192)
474 PF02456 Adeno_IVa2: Adenoviru 96.0 0.01 2.2E-07 62.8 5.6 39 187-225 69-108 (369)
475 PF05970 PIF1: PIF1-like helic 96.0 0.022 4.7E-07 63.0 8.5 42 178-228 5-46 (364)
476 PRK05541 adenylylsulfate kinas 96.0 0.0078 1.7E-07 59.1 4.5 28 202-229 5-32 (176)
477 TIGR01425 SRP54_euk signal rec 96.0 0.036 7.8E-07 62.3 10.1 39 202-240 98-139 (429)
478 TIGR00959 ffh signal recogniti 96.0 0.039 8.4E-07 62.2 10.4 71 202-272 97-192 (428)
479 PRK13541 cytochrome c biogenes 95.9 0.068 1.5E-06 53.4 11.2 27 202-228 24-50 (195)
480 PRK10416 signal recognition pa 95.9 0.037 8.1E-07 60.0 9.8 37 202-238 112-151 (318)
481 TIGR03796 NHPM_micro_ABC1 NHPM 95.9 0.032 7E-07 67.0 10.3 28 201-228 502-529 (710)
482 PF03796 DnaB_C: DnaB-like hel 95.9 0.021 4.5E-07 59.8 7.6 40 200-239 15-58 (259)
483 cd03287 ABC_MSH3_euk MutS3 hom 95.9 0.068 1.5E-06 55.0 11.2 105 204-327 31-158 (222)
484 TIGR00064 ftsY signal recognit 95.9 0.047 1E-06 57.9 10.3 38 202-239 70-110 (272)
485 PF00488 MutS_V: MutS domain V 95.9 0.061 1.3E-06 55.8 10.9 104 204-326 43-169 (235)
486 cd03215 ABC_Carb_Monos_II This 95.9 0.015 3.3E-07 57.5 6.1 26 203-228 25-50 (182)
487 COG1136 SalX ABC-type antimicr 95.9 0.061 1.3E-06 55.3 10.6 24 203-226 30-53 (226)
488 COG2074 2-phosphoglycerate kin 95.9 0.14 3.1E-06 53.0 13.0 184 201-416 86-282 (299)
489 PRK05480 uridine/cytidine kina 95.9 0.012 2.6E-07 59.4 5.4 39 203-241 5-44 (209)
490 cd03239 ABC_SMC_head The struc 95.8 0.049 1.1E-06 54.0 9.4 23 206-228 24-46 (178)
491 COG2805 PilT Tfp pilus assembl 95.8 0.015 3.2E-07 61.6 5.9 71 203-273 123-209 (353)
492 PRK12338 hypothetical protein; 95.8 0.0087 1.9E-07 64.5 4.4 31 203-233 3-33 (319)
493 PRK13539 cytochrome c biogenes 95.8 0.071 1.5E-06 53.8 10.8 27 202-228 26-52 (207)
494 TIGR03819 heli_sec_ATPase heli 95.8 0.018 3.9E-07 63.0 6.8 69 204-272 178-263 (340)
495 TIGR02524 dot_icm_DotB Dot/Icm 95.8 0.024 5.3E-07 62.4 7.7 66 205-272 135-222 (358)
496 TIGR03797 NHPM_micro_ABC2 NHPM 95.8 0.046 9.9E-07 65.5 10.6 28 201-228 476-503 (686)
497 PRK00889 adenylylsulfate kinas 95.7 0.013 2.9E-07 57.4 5.0 36 203-238 3-41 (175)
498 cd03217 ABC_FeS_Assembly ABC-t 95.7 0.053 1.2E-06 54.5 9.4 26 202-227 24-49 (200)
499 PRK10078 ribose 1,5-bisphospho 95.7 0.01 2.2E-07 59.0 4.1 29 205-233 3-31 (186)
500 PRK14529 adenylate kinase; Pro 95.7 0.0079 1.7E-07 61.9 3.3 34 206-241 2-35 (223)
No 1
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-107 Score=913.50 Aligned_cols=564 Identities=32% Similarity=0.503 Sum_probs=497.5
Q ss_pred CccchHHHHHhhccCCccEEEEEcCeeEEEEEEecCceeEEEEeC-CCChhHHHHHHhCCCeEEEecccchhhHHHHHHH
Q 005285 36 PKLPYTYFLEKLDSSEVAAVVFTEDLKRLYVTMKEGFPLEYVVDI-PLDPYLFETIASSGAEVDLLQKRQIHYFLKVLIA 114 (704)
Q Consensus 36 ~~~~y~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 114 (704)
.+++|++|..++..++|++|.+..+...+.++.++|....+.+.. ..|+.+...|..+++.+....+...+.|..++.+
T Consensus 23 ~~~~~~~f~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (596)
T COG0465 23 KQVTYSQFIQLVSGGKVSSVSIKGDSKTVNLKLKDGSKNTVYLPKGVNDPNLVSFLDSNNITESGFIPEDNSLLASLLST 102 (596)
T ss_pred ccccHHHHHHHHhcCCceEEEEcCCceEEEEEecCCcceEEeecCCcccHHHHHHHHhcCCcccccCCCcccHHHHHHHH
Confidence 579999999999999999999998766677777777322222222 2478899999999987766655555677888889
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhhhhhhhhhhhhhhhcccccCCCcccCCCccccceecCcccHHHHHHHHHHhCCch
Q 005285 115 LLPGILILSLIRETVMLLHITSSRLLYKKYNQLFDMAYAENFILPVGYVSDTKSMYKEVVLGGDVWDLLDELMIYMGNPM 194 (704)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~ 194 (704)
++|+++++.+++...++....++ ....|++++++++.... ...+++|+||+|.+++|+++.|+|+||++|.
T Consensus 103 ~lp~il~~~~~~~~~~r~~~~g~------g~~~~~~gkskak~~~~---~~~~v~F~DVAG~dEakeel~EiVdfLk~p~ 173 (596)
T COG0465 103 WLPFILLIGLGWFFFRRQAQGGG------GGGAFSFGKSKAKLYLE---DQVKVTFADVAGVDEAKEELSELVDFLKNPK 173 (596)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCC------CCcccCCChHHHHHhcc---cccCcChhhhcCcHHHHHHHHHHHHHHhCch
Confidence 99998887544333322211111 01278899999876643 4788999999999999999999999999999
Q ss_pred hhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccch-hhhhHHHHHHHHHHHhhCCCeEEEEccchh
Q 005285 195 QYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-EKSGAARINEMFSIARRNAPAFVFVDEIDA 273 (704)
Q Consensus 195 ~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~-~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDa 273 (704)
+|.++|++.|+||||+||||||||+||||+|+|+++||+++|+++|+++ ++.|++++|++|.+|++++||||||||||+
T Consensus 174 ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDA 253 (596)
T COG0465 174 KYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDA 253 (596)
T ss_pred hhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhh
Confidence 9999999999999999999999999999999999999999999999999 699999999999999999999999999999
Q ss_pred hhccC----CCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHH
Q 005285 274 IAGRH----ARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQ 349 (704)
Q Consensus 274 l~~~~----~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~e 349 (704)
++..| ++++++++|++||||.+||||..+. +|+||++||+|+.||+||+|||||||+|.++.||..+
T Consensus 254 vGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~---------gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~g 324 (596)
T COG0465 254 VGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNE---------GVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKG 324 (596)
T ss_pred cccccCCCCCCCchHHHHHHHHHHhhhccCCCCC---------ceEEEecCCCcccchHhhcCCCCcceeeecCCcchhh
Confidence 98766 3688999999999999999987554 4999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhccccccchhhh
Q 005285 350 RVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQ 429 (704)
Q Consensus 350 R~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al~~~~~~~~g~~~~~~~~ 429 (704)
|++|++.|+++++++.++|+..+|+.|+||+|+|++|++|+|++.|+|+++..|++.|+.+|+++++. |.
T Consensus 325 Re~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv~~---G~------- 394 (596)
T COG0465 325 REQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAIDRVIA---GP------- 394 (596)
T ss_pred HHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccchHHHHHHHhc---Cc-------
Confidence 99999999999999999999999999999999999999999999999999999999999999999985 33
Q ss_pred hhhccchhhHHHHHHHHHHHHHHHHHhhcCCCcccceeeeccCCceeeEEEecccccccccccccHHHHHHHHHHHhhhh
Q 005285 430 QKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAISVFYPREDTIDQGYTTFGYLKMQMVVAHGGR 509 (704)
Q Consensus 430 ~~~~~~~~~~~k~~~A~HEaGhalva~~~p~~~~~~~~~i~p~~~~~~~t~~~p~e~~~~~~~~t~~~l~~~i~v~LgGR 509 (704)
++++..+++++|+.+||||+|||++++.+|+.|++++++|+|+|+++|+|+++|.+|. .++|+.+++++|+++||||
T Consensus 395 erks~vise~ek~~~AYhEaghalv~~~l~~~d~v~KvtIiPrG~alG~t~~~Pe~d~---~l~sk~~l~~~i~~~lgGR 471 (596)
T COG0465 395 ERKSRVISEAEKKITAYHEAGHALVGLLLPDADPVHKVTIIPRGRALGYTLFLPEEDK---YLMSKEELLDRIDVLLGGR 471 (596)
T ss_pred CcCCcccChhhhcchHHHHHHHHHHHHhCCCCcccceeeeccCchhhcchhcCCcccc---ccccHHHHHHHHHHHhCCc
Confidence 3445578999999999999999999999999999999999999999999999999975 4669999999999999999
Q ss_pred HHHHhHcCCCCCCCCchhHHHHHHHHHHHHhcccccccCcccccccccccCCCCCCCCccccccCCCCCCCCCCCCHHHH
Q 005285 510 CAERLVFGDDVTDGGKDDLEKITKIAREMVISPQNARLGLAGLTRRVGLLDRPDSSDGDLIKYRWDDPQVIPTDMTLELS 589 (704)
Q Consensus 510 aAEelvfG~~vttGas~DL~~AT~iA~~MV~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~a 589 (704)
||||++||.++||||+|||++||++||.||++| ||+..+|++.+...++ .|+++.+ ..+++|++|+
T Consensus 472 aAEel~~g~e~ttGa~~D~~~at~~ar~mVt~~--------Gms~~lG~v~~~~~~~-~flg~~~-----~~~~~Se~ta 537 (596)
T COG0465 472 AAEELIFGYEITTGASNDLEKATDLARAMVTEY--------GMSAKLGPVAYEQVEG-VFLGRYQ-----KAKNYSEETA 537 (596)
T ss_pred HhhhhhhcccccccchhhHHHHHHHHHHhhhhc--------CcchhhCceehhhccc-ccccccc-----cccCccHHHH
Confidence 999999993499999999999999999999994 4555666666655444 6666543 3568999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhcccCHHHHHHHHcCCC
Q 005285 590 ELFTRELTRYIEETEELAMNGLRDNKHILEIIAKELLENSRITGLEVEEKLQGLS 644 (704)
Q Consensus 590 ~~iD~Ev~~il~~ay~~A~~lL~~nr~~L~~lA~~LlekEtL~g~ei~~il~~~~ 644 (704)
+.||.||++++++||++|++||.+|++.++.+|++|+|+|||++++|.+|+....
T Consensus 538 ~~ID~evk~ii~~~y~~a~~il~~~~~~l~~~~~~Lle~Eti~~~~i~~i~~~~~ 592 (596)
T COG0465 538 QEIDREVKDIIDEAYERAKELLNENKDALETLAEMLLEKETIDAEEIKDILAGRK 592 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999999998753
No 2
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-105 Score=854.12 Aligned_cols=437 Identities=32% Similarity=0.545 Sum_probs=407.3
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccch
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS 243 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~ 243 (704)
...+++|+||-|.+++|++|+|+|+||++|.+|.++|.+.|+||||+||||||||+||||+|+|+|+|||+.++++|-++
T Consensus 297 ~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm 376 (752)
T KOG0734|consen 297 QMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEM 376 (752)
T ss_pred hhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhh
Confidence 56689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCCh-hHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcC
Q 005285 244 -EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDP-RRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATN 321 (704)
Q Consensus 244 -~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~-e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN 321 (704)
+|+|++++|++|..|++++||||||||||+++++|...+. ...+++||||.+||||..+. +||||+|||
T Consensus 377 ~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNe---------GiIvigATN 447 (752)
T KOG0734|consen 377 FVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNE---------GIIVIGATN 447 (752)
T ss_pred hhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCC---------ceEEEeccC
Confidence 7999999999999999999999999999999988754433 67899999999999987655 599999999
Q ss_pred CCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCC
Q 005285 322 RPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHS 401 (704)
Q Consensus 322 ~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r~~~~ 401 (704)
.|+.||+||.||||||++|.+|.||..+|.+||+.|+.+..++.++|+.-||+.|+||+|+||+|++|.|++.|+..+..
T Consensus 448 fpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~ 527 (752)
T KOG0734|consen 448 FPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAE 527 (752)
T ss_pred ChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHhccccccchhhhhhhccchhhHHHHHHHHHHHHHHHHHhhcCCCcccceeeeccCCceeeEEEe
Q 005285 402 KIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAISVF 481 (704)
Q Consensus 402 ~It~~dl~~Al~~~~~~~~g~~~~~~~~~~~~~~~~~~~k~~~A~HEaGhalva~~~p~~~~~~~~~i~p~~~~~~~t~~ 481 (704)
.+++.+++.|-|++++ |. +++...++++.++.+||||+||||||....+..|.++++|.|||.++|.|.+
T Consensus 528 ~VtM~~LE~akDrIlM---G~-------ERks~~i~~eak~~TAyHE~GHAivA~yTk~A~PlhKaTImPRG~sLG~t~~ 597 (752)
T KOG0734|consen 528 MVTMKHLEFAKDRILM---GP-------ERKSMVIDEEAKKITAYHEGGHAIVALYTKGAMPLHKATIMPRGPSLGHTSQ 597 (752)
T ss_pred cccHHHHhhhhhheee---cc-------cccccccChhhhhhhhhhccCceEEEeecCCCccccceeeccCCccccceee
Confidence 9999999999999984 43 3456788889999999999999999999999999999999999999999999
Q ss_pred cccccccccccccHHHHHHHHHHHhhhhHHHHhHcC-CCCCCCCchhHHHHHHHHHHHHhcccccccCcccccccccccC
Q 005285 482 YPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFG-DDVTDGGKDDLEKITKIAREMVISPQNARLGLAGLTRRVGLLD 560 (704)
Q Consensus 482 ~p~e~~~~~~~~t~~~l~~~i~v~LgGRaAEelvfG-~~vttGas~DL~~AT~iA~~MV~~~~~~~~g~~~~~~~~g~~~ 560 (704)
+|..|++. .||.+|+++|.||||||||||++|| ++|||||+|||++||++|++||++ +|||+++|++.
T Consensus 598 LPe~D~~~---~Tk~q~LA~lDV~MGGRvAEELIfG~D~iTsGAssDl~qAT~lA~~MVt~--------fGMSd~vG~v~ 666 (752)
T KOG0734|consen 598 LPEKDRYS---ITKAQLLARLDVCMGGRVAEELIFGTDKITSGASSDLDQATKLARRMVTK--------FGMSDKVGPVT 666 (752)
T ss_pred cCccchhh---HHHHHHHHHHHHhhcchHHHHHhccCCcccccccchHHHHHHHHHHHHHH--------cCcccccccee
Confidence 99998754 4999999999999999999999999 579999999999999999999999 45677777776
Q ss_pred CCCCCCCccccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhcccCHHHHHHHH
Q 005285 561 RPDSSDGDLIKYRWDDPQVIPTDMTLELSELFTRELTRYIEETEELAMNGLRDNKHILEIIAKELLENSRITGLEVEEKL 640 (704)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~a~~iD~Ev~~il~~ay~~A~~lL~~nr~~L~~lA~~LlekEtL~g~ei~~il 640 (704)
+....+ ...++.+|+++||.||+++|+++|+||+.||+.|...|++||++||++|||+++||++++
T Consensus 667 ~~~~~~--------------~~s~~~~t~~lidaEi~~lL~~sYeRak~iL~~h~kEl~~LA~ALleYETL~A~eik~vl 732 (752)
T KOG0734|consen 667 LSAEDN--------------SSSLSPRTQELIDAEIKRLLRDSYERAKSILKTHKKELHALAEALLEYETLDAKEIKRVL 732 (752)
T ss_pred eeccCC--------------CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 543221 234678899999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 005285 641 QGLS 644 (704)
Q Consensus 641 ~~~~ 644 (704)
++..
T Consensus 733 ~g~~ 736 (752)
T KOG0734|consen 733 KGKS 736 (752)
T ss_pred hccc
Confidence 8763
No 3
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-100 Score=861.94 Aligned_cols=571 Identities=33% Similarity=0.487 Sum_probs=461.3
Q ss_pred ccchHHHH-HhhccCCccEEEEEcCeeEEEEEEecCc------eeEEEEeCCCChhHHHHHH----hCCCe-EEEecc--
Q 005285 37 KLPYTYFL-EKLDSSEVAAVVFTEDLKRLYVTMKEGF------PLEYVVDIPLDPYLFETIA----SSGAE-VDLLQK-- 102 (704)
Q Consensus 37 ~~~y~~f~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~l~----~~~~~-~~~~~~-- 102 (704)
++++.+|+ ++++.|.|..+.+.+....+.+.+..+. ...+...+-.-..+.+.|. +-++. ++..+.
T Consensus 165 ei~~~df~~~~le~g~v~~~evv~~~~~~rv~~~~~~~~~~~~~~~~~~~i~~v~~F~~kl~~a~~~l~~~~~~~~pV~~ 244 (774)
T KOG0731|consen 165 EITWRDFKQKLLEKGEVGKLEVVNPYAVVRVELDRGRIPGDRLIQKVWFNIRSVDNFERKLDEAQRNLGIDTVVRVPVTY 244 (774)
T ss_pred eeeHHHHHHHHhhccceeeEEeeccceeEEEEEeccccccccceeeEEEEecccchHHHHHHHHHHHhCCCceeEeeeEE
Confidence 69999995 5689999999988763222333333211 1222222222223333332 22322 222222
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhhhc--cchhhhhhhhhhhhhhhhhcccccCCCcccCCCccccceecCcccH
Q 005285 103 RQIHYFLKVLIALLPGILILSLIRETVMLLHI--TSSRLLYKKYNQLFDMAYAENFILPVGYVSDTKSMYKEVVLGGDVW 180 (704)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~dVvG~~~~k 180 (704)
-....|...+..++|+++++..++...+...+ ..... +.. ..+.|+.++++ ..+..+.+++++|+||+|++++|
T Consensus 245 ~~~~~~~~~~~~~~pti~~~~~l~~l~r~~~~~~~~~~g--g~~-g~~~f~~~ks~-~k~~~~~~t~V~FkDVAG~deAK 320 (774)
T KOG0731|consen 245 ISESLLDLILGLLLPTILLLGGLLYLSRRSEGMGKGGPG--GGL-GPRLFGVSKSY-KKFKNEGNTGVKFKDVAGVDEAK 320 (774)
T ss_pred eecchhhhhhhhhhHHHHHHHhHheeeeecccccccCCc--ccc-Ccceeeeccce-eeeccCCCCCCccccccCcHHHH
Confidence 11234455566777855444332222111111 00000 011 11223333332 22344678889999999999999
Q ss_pred HHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccch-hhhhHHHHHHHHHHHh
Q 005285 181 DLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-EKSGAARINEMFSIAR 259 (704)
Q Consensus 181 ~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~-~~~g~~~vr~lF~~Ak 259 (704)
++|+|+|+||+||++|.++|+++|+|+||+||||||||+||||+|+|+|+||+++++++|+++ ++.+++++|++|..|+
T Consensus 321 ~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~ar 400 (774)
T KOG0731|consen 321 EELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLAR 400 (774)
T ss_pred HHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999 6888999999999999
Q ss_pred hCCCeEEEEccchhhhccCC-----CCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCC
Q 005285 260 RNAPAFVFVDEIDAIAGRHA-----RKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPG 334 (704)
Q Consensus 260 ~~~P~ILfIDEiDal~~~~~-----~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpg 334 (704)
.++||||||||||+++.++. ++++++++++||||.+|||+.... +|+|+++||+++.||+||+|||
T Consensus 401 ~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~---------~vi~~a~tnr~d~ld~allrpG 471 (774)
T KOG0731|consen 401 KNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK---------GVIVLAATNRPDILDPALLRPG 471 (774)
T ss_pred ccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC---------cEEEEeccCCccccCHHhcCCC
Confidence 99999999999999998773 578999999999999999987654 4999999999999999999999
Q ss_pred ccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHH
Q 005285 335 RIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLD 413 (704)
Q Consensus 335 Rfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al~ 413 (704)
||||+|.++.|+..+|.+|++.|+++..+. +++|+..+|..|+||+|+||+|+||+|++.|+|++...|+..|+.+|++
T Consensus 472 Rfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~~~~~~~a~~ 551 (774)
T KOG0731|consen 472 RFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREIGTKDLEYAIE 551 (774)
T ss_pred ccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCccchhhHHHHHH
Confidence 999999999999999999999999999985 7889999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccccchhhhhhhccchhhHHHHHHHHHHHHHHHHHhhcCCCcccceeeeccCCceeeEEEecccccccccccc
Q 005285 414 KQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAISVFYPREDTIDQGYT 493 (704)
Q Consensus 414 ~~~~~~~g~~~~~~~~~~~~~~~~~~~k~~~A~HEaGhalva~~~p~~~~~~~~~i~p~~~~~~~t~~~p~e~~~~~~~~ 493 (704)
+++. |. +++...++.++++.+||||||||+++|++++.+|+.+++|+|+ +++|+++++|.++ +++
T Consensus 552 Rvi~---G~-------~~~~~~~~~~~~~~~a~~eagha~~g~~l~~~dpl~kvsIiPG-qalG~a~~~P~~~----~l~ 616 (774)
T KOG0731|consen 552 RVIA---GM-------EKKSRVLSLEEKKTVAYHEAGHAVVGWLLEHADPLLKVSIIPG-QALGYAQYLPTDD----YLL 616 (774)
T ss_pred HHhc---cc-------cccchhcCHhhhhhhhhhhccchhhhccccccCcceeEEeccC-CccceEEECCccc----ccc
Confidence 8763 32 3456788999999999999999999999999999999999994 4999999999987 467
Q ss_pred cHHHHHHHHHHHhhhhHHHHhHcCCCCCCCCchhHHHHHHHHHHHHhcccccccCcccccccccccCCCCCCCCcccccc
Q 005285 494 TFGYLKMQMVVAHGGRCAERLVFGDDVTDGGKDDLEKITKIAREMVISPQNARLGLAGLTRRVGLLDRPDSSDGDLIKYR 573 (704)
Q Consensus 494 t~~~l~~~i~v~LgGRaAEelvfG~~vttGas~DL~~AT~iA~~MV~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~ 573 (704)
|+++|++|||++||||||||++||+++||||++||++||++|+.||++| ||++++|+++++..... ++
T Consensus 617 sk~ql~~rm~m~LGGRaAEev~fg~~iTtga~ddl~kvT~~A~~~V~~~--------Gms~kig~~~~~~~~~~---~~- 684 (774)
T KOG0731|consen 617 SKEQLFDRMVMALGGRAAEEVVFGSEITTGAQDDLEKVTKIARAMVASF--------GMSEKIGPISFQMLLPG---DE- 684 (774)
T ss_pred cHHHHHHHHHHHhCcchhhheecCCccCchhhccHHHHHHHHHHHHHHc--------CcccccCceeccCcccc---cc-
Confidence 9999999999999999999999996799999999999999999999984 45555666555221111 11
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhcccCHHHHHHHHcCCCCCCccccc
Q 005285 574 WDDPQVIPTDMTLELSELFTRELTRYIEETEELAMNGLRDNKHILEIIAKELLENSRITGLEVEEKLQGLSPVMFEDFV 652 (704)
Q Consensus 574 ~~~~~~~~~~~s~~~a~~iD~Ev~~il~~ay~~A~~lL~~nr~~L~~lA~~LlekEtL~g~ei~~il~~~~~~~~~~~~ 652 (704)
...++||..+++.||.||++|+..||++|.++|++|++.|+.||+.||+||+|+++|+.+++...++.++.+..
T Consensus 685 -----~~~~p~s~~~~~~Id~ev~~lv~~ay~~~~~ll~~n~~~l~~ia~~LLeke~l~~ee~~~ll~~~~~~~~~~~~ 758 (774)
T KOG0731|consen 685 -----SFRKPYSEKTAQLIDTEVRRLVQKAYERTKELLRTNRDKLDKIAEVLLEKEVLTGEEIIALLGERPPGMPEKNV 758 (774)
T ss_pred -----cccCccchhHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccHHHHHHHhccCCCcccccch
Confidence 22467899999999999999999999999999999999999999999999999999999999988877754433
No 4
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=1.3e-93 Score=822.46 Aligned_cols=566 Identities=30% Similarity=0.488 Sum_probs=475.6
Q ss_pred CccchHHHHHhhccCCccEEEEEcCeeE--EEEEEec-Cc-eeEEEEeCC-CChhHHHHHHhCCCeEEEecccchhhHHH
Q 005285 36 PKLPYTYFLEKLDSSEVAAVVFTEDLKR--LYVTMKE-GF-PLEYVVDIP-LDPYLFETIASSGAEVDLLQKRQIHYFLK 110 (704)
Q Consensus 36 ~~~~y~~f~~~~~~~~v~~~~~~~~~~~--~~~~~~~-~~-~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 110 (704)
++++||+|++++++|+|++|.+.++... +..+.++ |. ...|.+.+| .++.+.+.|.+++|++...+....++|..
T Consensus 50 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 129 (638)
T CHL00176 50 SRMTYGRFLEYLDMGWIKKVDLYDNGRTAIVEASSPELGNRPQRIRVELPVGASELIQKLKEANIDFDAHPPVLKSNIVT 129 (638)
T ss_pred ceecHHHHHHHHHcCCeeEEEEecCceEEEEeeccccCCCcceeEEEeCCCCCHHHHHHHHHcCCcEEecCCCccchHHH
Confidence 4699999999999999999999877532 2223332 21 235777787 48999999999999999877655555665
Q ss_pred HHHH-HHHHHHHHHHHHHHHHhhhccchhhhhhhhhhhhhhhhhcccccCCCcccCCCccccceecCcccHHHHHHHHHH
Q 005285 111 VLIA-LLPGILILSLIRETVMLLHITSSRLLYKKYNQLFDMAYAENFILPVGYVSDTKSMYKEVVLGGDVWDLLDELMIY 189 (704)
Q Consensus 111 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~dVvG~~~~k~~L~elv~~ 189 (704)
.+.. ++|+++++.+++..........+ ....+++++++++.+.. .....++|+||+|.+++|+++.+++++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~---~~~~~~~f~dv~G~~~~k~~l~eiv~~ 201 (638)
T CHL00176 130 ILSNLLLPLILIGVLWFFFQRSSNFKGG-----PGQNLMNFGKSKARFQM---EADTGITFRDIAGIEEAKEEFEEVVSF 201 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCC-----CcccccccchhHHHhhc---ccCCCCCHHhccChHHHHHHHHHHHHH
Confidence 5544 46777665443322221110000 01235677777754432 356678999999999999999999999
Q ss_pred hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccch-hhhhHHHHHHHHHHHhhCCCeEEEE
Q 005285 190 MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-EKSGAARINEMFSIARRNAPAFVFV 268 (704)
Q Consensus 190 l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~-~~~g~~~vr~lF~~Ak~~~P~ILfI 268 (704)
+++|..|..+|...|+|+||+||||||||++|+++|+++++||+++++++|.+. .+.+..+++.+|..|+..+||||||
T Consensus 202 lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfI 281 (638)
T CHL00176 202 LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSPCIVFI 281 (638)
T ss_pred HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHHHHHHhcCCCcEEEE
Confidence 999999999999999999999999999999999999999999999999999887 4677888999999999999999999
Q ss_pred ccchhhhccCC----CCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCC
Q 005285 269 DEIDAIAGRHA----RKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGL 344 (704)
Q Consensus 269 DEiDal~~~~~----~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~ 344 (704)
||||+++.+++ +.+++..+++++||.+||++.... +|+||+|||+++.+|++++||||||++|.|++
T Consensus 282 DEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~---------~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~l 352 (638)
T CHL00176 282 DEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNK---------GVIVIAATNRVDILDAALLRPGRFDRQITVSL 352 (638)
T ss_pred ecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCC---------CeeEEEecCchHhhhhhhhccccCceEEEECC
Confidence 99999986542 346777899999999999876443 48999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhcccccc
Q 005285 345 PDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLL 424 (704)
Q Consensus 345 Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al~~~~~~~~g~~~ 424 (704)
|+.++|.+||+.|+++..+..++++..+|..|.||+|+||+++||+|++.|++++...|+.+|+.+|+++++.+..+
T Consensus 353 Pd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~rv~~g~~~--- 429 (638)
T CHL00176 353 PDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMKEIDTAIDRVIAGLEG--- 429 (638)
T ss_pred CCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhhhcc---
Confidence 99999999999999988888899999999999999999999999999999999999999999999999998753221
Q ss_pred chhhhhhhccchhhHHHHHHHHHHHHHHHHHhhcCCCcccceeeeccCCceeeEEEecccccccccccccHHHHHHHHHH
Q 005285 425 TEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAISVFYPREDTIDQGYTTFGYLKMQMVV 504 (704)
Q Consensus 425 ~~~~~~~~~~~~~~~~k~~~A~HEaGhalva~~~p~~~~~~~~~i~p~~~~~~~t~~~p~e~~~~~~~~t~~~l~~~i~v 504 (704)
....++++|+++||||+||||+++++|+.+++++++|+|||.++|++++.|.++.+ ..|+.+|+++|++
T Consensus 430 --------~~~~~~~~~~~vA~hEaGhA~v~~~l~~~~~v~kvtI~prg~~~G~~~~~p~~~~~---~~t~~~l~~~i~~ 498 (638)
T CHL00176 430 --------TPLEDSKNKRLIAYHEVGHAIVGTLLPNHDPVQKVTLIPRGQAKGLTWFTPEEDQS---LVSRSQILARIVG 498 (638)
T ss_pred --------CccccHHHHHHHHHHhhhhHHHHhhccCCCceEEEEEeecCCCCCceEecCCcccc---cccHHHHHHHHHH
Confidence 12345678999999999999999999999999999999999999999999988753 5699999999999
Q ss_pred HhhhhHHHHhHcCC-CCCCCCchhHHHHHHHHHHHHhcccccccCcccccccccccCCCCCCC-CccccccCCCCCCCCC
Q 005285 505 AHGGRCAERLVFGD-DVTDGGKDDLEKITKIAREMVISPQNARLGLAGLTRRVGLLDRPDSSD-GDLIKYRWDDPQVIPT 582 (704)
Q Consensus 505 ~LgGRaAEelvfG~-~vttGas~DL~~AT~iA~~MV~~~~~~~~g~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~ 582 (704)
+|||||||+++||+ ++||||+|||++||+||++||++|||+.+|++.+.. ... ..|++... ....
T Consensus 499 ~LgGraAE~~~fg~~~~~~Ga~~Dl~~AT~iA~~mv~~~Gm~~~g~~~~~~---------~~~~~~~~~~~~----~~~~ 565 (638)
T CHL00176 499 ALGGRAAEEVVFGSTEVTTGASNDLQQVTNLARQMVTRFGMSSIGPISLES---------NNSTDPFLGRFM----QRNS 565 (638)
T ss_pred HhhhHHHHHHhcCCCCcCCCchhHHHHHHHHHHHHHHHhCCCcCCceeecC---------CCCccccccccc----cccc
Confidence 99999999999995 699999999999999999999997766666554432 222 33444322 2346
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhcccCHHHHHHHHcCCCC
Q 005285 583 DMTLELSELFTRELTRYIEETEELAMNGLRDNKHILEIIAKELLENSRITGLEVEEKLQGLSP 645 (704)
Q Consensus 583 ~~s~~~a~~iD~Ev~~il~~ay~~A~~lL~~nr~~L~~lA~~LlekEtL~g~ei~~il~~~~~ 645 (704)
+||++++..||.||+++|++||++|++||++||+.|++||++|+|+|||+++||++|++....
T Consensus 566 ~~s~~~~~~iD~ev~~~l~~~~~~a~~iL~~~~~~l~~la~~Lle~Etl~~~ei~~il~~~~~ 628 (638)
T CHL00176 566 EYSEEIADKIDMEVRSILHTCYQYAYQILKDNRVLIDLLVELLLQKETIDGDEFREIVNSYTI 628 (638)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCHHHHHHHHhhcCC
Confidence 799999999999999999999999999999999999999999999999999999999987543
No 5
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=1.8e-90 Score=804.04 Aligned_cols=571 Identities=27% Similarity=0.467 Sum_probs=480.9
Q ss_pred CccchHHHHHhhccCCccEEEEEcCeeEEEEEEecCceeEEEEeCC-CChhHHHHHHhCCCeEEEecccchhhHHHHHHH
Q 005285 36 PKLPYTYFLEKLDSSEVAAVVFTEDLKRLYVTMKEGFPLEYVVDIP-LDPYLFETIASSGAEVDLLQKRQIHYFLKVLIA 114 (704)
Q Consensus 36 ~~~~y~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 114 (704)
..++|+.|.+.+.++.|.++.+..+ +++++.+++ ..|.+..| .++.++..|.++++++...+.....++..++.+
T Consensus 30 ~~~~~~~~~~~~~~~~v~Ev~~~~~--tIK~~~~e~--~~~~~~~~~~~~~l~~~l~~~~v~~~~~~~~~~~~~~~i~~~ 105 (644)
T PRK10733 30 RKVDYSTFLQEVNQDQVREARINGR--EINVTKKDS--NRYTTYIPVNDPKLLDNLLTKNVKVVGEPPEEPSLLASIFIS 105 (644)
T ss_pred ccCCHHHHHHHHHcCCeEEEEEeCC--EEEEEEcCC--ceEEEeCCCCCHHHHHHHHHcCCeEEecCcccchHHHHHHHH
Confidence 4699999999999999999999766 566666665 34666556 477899999999999988766554555555555
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhhhhhhhhhhhhhhhcccccCCCcccCCCccccceecCcccHHHHHHHHHHhCCch
Q 005285 115 LLPGILILSLIRETVMLLHITSSRLLYKKYNQLFDMAYAENFILPVGYVSDTKSMYKEVVLGGDVWDLLDELMIYMGNPM 194 (704)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~ 194 (704)
++|+++++.++......+..++ ...++.|.+........ .....+|+|+.|.+.+++.+.++++++++|.
T Consensus 106 ~~~~il~ig~~~v~~g~mt~G~-------~~~l~af~~~~~~~~~~---~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~ 175 (644)
T PRK10733 106 WFPMLLLIGVWIFFMRQMQGGG-------GKGAMSFGKSKARMLTE---DQIKTTFADVAGCDEAKEEVAELVEYLREPS 175 (644)
T ss_pred HHHHHHHHHHHHHHHhhhcCCC-------CceeEEeccccccccCc---hhhhCcHHHHcCHHHHHHHHHHHHHHhhCHH
Confidence 5666555543332222222111 12456666665544332 4567889999999999999999999999999
Q ss_pred hhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccch-hhhhHHHHHHHHHHHhhCCCeEEEEccchh
Q 005285 195 QYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-EKSGAARINEMFSIARRNAPAFVFVDEIDA 273 (704)
Q Consensus 195 ~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~-~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDa 273 (704)
.|...+...|+|+||+||||||||++|+++|+++++||+.++++++.+. .+.+...++.+|..|+..+||||||||+|+
T Consensus 176 ~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~ 255 (644)
T PRK10733 176 RFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDA 255 (644)
T ss_pred HHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhh
Confidence 9999999999999999999999999999999999999999999999887 477888999999999999999999999999
Q ss_pred hhccCC----CCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHH
Q 005285 274 IAGRHA----RKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQ 349 (704)
Q Consensus 274 l~~~~~----~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~e 349 (704)
++.++. +++.+..+++|+||.+||++.... +|+||+|||+|+.||++++||||||++|.|+.|+.++
T Consensus 256 l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~---------~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~ 326 (644)
T PRK10733 256 VGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE---------GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRG 326 (644)
T ss_pred hhhccCCCCCCCchHHHHHHHHHHHhhhcccCCC---------CeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHH
Confidence 987653 345677889999999999976543 4999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhccccccchhhh
Q 005285 350 RVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQ 429 (704)
Q Consensus 350 R~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al~~~~~~~~g~~~~~~~~ 429 (704)
|.+||+.|+++.++..++|+..+++.|.||||+||.++|++|++.|+++++..|+..|+.+|++++.. |.
T Consensus 327 R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~~~a~~~v~~---g~------- 396 (644)
T PRK10733 327 REQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMM---GA------- 396 (644)
T ss_pred HHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHhc---cc-------
Confidence 99999999999999889999999999999999999999999999999999999999999999998763 21
Q ss_pred hhhccchhhHHHHHHHHHHHHHHHHHhhcCCCcccceeeeccCCceeeEEEecccccccccccccHHHHHHHHHHHhhhh
Q 005285 430 QKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAISVFYPREDTIDQGYTTFGYLKMQMVVAHGGR 509 (704)
Q Consensus 430 ~~~~~~~~~~~k~~~A~HEaGhalva~~~p~~~~~~~~~i~p~~~~~~~t~~~p~e~~~~~~~~t~~~l~~~i~v~LgGR 509 (704)
++....+++++++++||||+||||+++++|+.+++++++|+|||.++|+++++|.++.+ ..||.+|+++|+++||||
T Consensus 397 ~~~~~~~~~~~~~~~a~he~gha~~~~~~~~~~~~~~v~i~prg~~~g~~~~~~~~~~~---~~~~~~l~~~i~~~lgGr 473 (644)
T PRK10733 397 ERRSMVMTEAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLPEGDAI---SASRQKLESQISTLYGGR 473 (644)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHccCCCceeEEEEeccCCCcceeEECCCcccc---cccHHHHHHHHHHHHhhH
Confidence 12234567788999999999999999999999999999999999999999999998754 359999999999999999
Q ss_pred HHHHhHcCC-CCCCCCchhHHHHHHHHHHHHhcccccccCcccccccccccCCCCCCCCccccccCCCCCCCCCCCCHHH
Q 005285 510 CAERLVFGD-DVTDGGKDDLEKITKIAREMVISPQNARLGLAGLTRRVGLLDRPDSSDGDLIKYRWDDPQVIPTDMTLEL 588 (704)
Q Consensus 510 aAEelvfG~-~vttGas~DL~~AT~iA~~MV~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 588 (704)
|||+++||+ ++||||+|||++||+||++||++|| |++++|++.+...+.+.|+++++ ...++||+++
T Consensus 474 aAE~~~~g~~~~ttGa~~Dl~~AT~lA~~mv~~~G--------ms~~lg~~~~~~~~~~~~lg~~~----~~~~~~s~~~ 541 (644)
T PRK10733 474 LAEEIIYGPEHVSTGASNDIKVATNLARNMVTQWG--------FSEKLGPLLYAEEEGEVFLGRSV----AKAKHMSDET 541 (644)
T ss_pred HHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhC--------CCccccchhhccccccccccccc----ccccccCHHH
Confidence 999999994 6999999999999999999999954 44445555544444455555543 2347899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhcccCHHHHHHHHcCCCCCCccccccc
Q 005285 589 SELFTRELTRYIEETEELAMNGLRDNKHILEIIAKELLENSRITGLEVEEKLQGLSPVMFEDFVKP 654 (704)
Q Consensus 589 a~~iD~Ev~~il~~ay~~A~~lL~~nr~~L~~lA~~LlekEtL~g~ei~~il~~~~~~~~~~~~~~ 654 (704)
++.||+||+++|++||++|++||++||+.|++||++|+|+|||+++||++|++.....+..++.++
T Consensus 542 ~~~id~ev~~il~~~~~~a~~iL~~~~~~l~~la~~Lle~etl~~~ei~~i~~~~~~~~~~~~~~~ 607 (644)
T PRK10733 542 ARIIDQEVKALIERNYNRARQLLTDNMDILHAMKDALMKYETIDAPQIDDLMARRDVRPPAGWEEP 607 (644)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhceeCHHHHHHHHhcCCCCCcccccCC
Confidence 999999999999999999999999999999999999999999999999999987655444444443
No 6
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=9.8e-81 Score=706.03 Aligned_cols=488 Identities=34% Similarity=0.554 Sum_probs=416.5
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHhhhccchhhhhhhhhhhhhhhhhcccccCCCcccCCCccccceecCcccHHHHHHH
Q 005285 108 FLKVLIALLP-GILILSLIRETVMLLHITSSRLLYKKYNQLFDMAYAENFILPVGYVSDTKSMYKEVVLGGDVWDLLDEL 186 (704)
Q Consensus 108 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~dVvG~~~~k~~L~el 186 (704)
|.+++..++| +++++.+++..+..+.+++ ++.+.++++++.+.. .+.+.++|+||+|.+++|+.+.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~---~~~~~~~~~di~g~~~~k~~l~~~ 70 (495)
T TIGR01241 2 LLGFLFSLLPPILLLVGVWFFFRRQMQGGG--------GRAFSFGKSKAKLLN---EEKPKVTFKDVAGIDEAKEELMEI 70 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCC--------CCCcCCCCCcccccc---CCCCCCCHHHhCCHHHHHHHHHHH
Confidence 4556666655 5555444443333332221 234556677765543 357889999999999999999999
Q ss_pred HHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccch-hhhhHHHHHHHHHHHhhCCCeE
Q 005285 187 MIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-EKSGAARINEMFSIARRNAPAF 265 (704)
Q Consensus 187 v~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~-~~~g~~~vr~lF~~Ak~~~P~I 265 (704)
+.++++|..|...|.+.|+|+|||||||||||++|+++|+++++||+.++++++.+. .+.+...++.+|+.|+..+|||
T Consensus 71 ~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~I 150 (495)
T TIGR01241 71 VDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCI 150 (495)
T ss_pred HHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999999999999999999999999999999999999999887 4677889999999999999999
Q ss_pred EEEccchhhhccCCC----CChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeee
Q 005285 266 VFVDEIDAIAGRHAR----KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLY 341 (704)
Q Consensus 266 LfIDEiDal~~~~~~----~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~ 341 (704)
|||||||+++.++.. .+++..+++++||.+||++.... +|+||+|||+|+.||++++||||||++|+
T Consensus 151 l~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~---------~v~vI~aTn~~~~ld~al~r~gRfd~~i~ 221 (495)
T TIGR01241 151 IFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNT---------GVIVIAATNRPDVLDPALLRPGRFDRQVV 221 (495)
T ss_pred EEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCC---------CeEEEEecCChhhcCHHHhcCCcceEEEE
Confidence 999999999876532 35667789999999999876543 48999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhccc
Q 005285 342 IGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMG 421 (704)
Q Consensus 342 v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al~~~~~~~~g 421 (704)
++.|+.++|.+||+.++++..+..++++..++..|.||||+||+++|++|++.|++++...|+.+|+..|++++..+
T Consensus 222 i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~~~~--- 298 (495)
T TIGR01241 222 VDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEITMNDIEEAIDRVIAG--- 298 (495)
T ss_pred cCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcc---
Confidence 99999999999999999988887889999999999999999999999999999999999999999999999987632
Q ss_pred cccchhhhhhhccchhhHHHHHHHHHHHHHHHHHhhcCCCcccceeeeccCCceeeEEEecccccccccccccHHHHHHH
Q 005285 422 VLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAISVFYPREDTIDQGYTTFGYLKMQ 501 (704)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~k~~~A~HEaGhalva~~~p~~~~~~~~~i~p~~~~~~~t~~~p~e~~~~~~~~t~~~l~~~ 501 (704)
. ++....+++++++++||||+||||+++.+|+.++++.++|.|+|..+|++.+.|.++. ...|+.+|+++
T Consensus 299 ~-------~~~~~~~~~~~~~~~A~hEaGhAlv~~~l~~~~~v~~vsi~prg~~~G~~~~~~~~~~---~~~t~~~l~~~ 368 (495)
T TIGR01241 299 P-------EKKSRVISEKEKKLVAYHEAGHALVGLLLKDADPVHKVTIIPRGQALGYTQFLPEEDK---YLYTKSQLLAQ 368 (495)
T ss_pred c-------ccccccccHHHHHHHHHHHHhHHHHHHhcCCCCceEEEEEeecCCccceEEecCcccc---ccCCHHHHHHH
Confidence 1 1223456778899999999999999999999889999999999999999999888753 45699999999
Q ss_pred HHHHhhhhHHHHhHcCCCCCCCCchhHHHHHHHHHHHHhcccccccCcccccccccccCCCCCCCCccccccCCCCCCCC
Q 005285 502 MVVAHGGRCAERLVFGDDVTDGGKDDLEKITKIAREMVISPQNARLGLAGLTRRVGLLDRPDSSDGDLIKYRWDDPQVIP 581 (704)
Q Consensus 502 i~v~LgGRaAEelvfG~~vttGas~DL~~AT~iA~~MV~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 581 (704)
|+|+|||||||+++|| ++|+||++||++||++|+.||++|| |++.+|++.+.......+++.++ ...
T Consensus 369 i~v~LaGraAE~~~~G-~~s~Ga~~Dl~~At~lA~~mv~~~G--------m~~~~g~~~~~~~~~~~~l~~~~----~~~ 435 (495)
T TIGR01241 369 IAVLLGGRAAEEIIFG-EVTTGASNDIKQATNIARAMVTEWG--------MSDKLGPVAYGSDGGDVFLGRGF----AKA 435 (495)
T ss_pred HHHHhhHHHHHHHHhc-CCCCCchHHHHHHHHHHHHHHHHhC--------CCcccCceeeccCcccccccccc----ccc
Confidence 9999999999999999 5999999999999999999999954 44445555444333333444322 235
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhcccCHHHHHHHHc
Q 005285 582 TDMTLELSELFTRELTRYIEETEELAMNGLRDNKHILEIIAKELLENSRITGLEVEEKLQ 641 (704)
Q Consensus 582 ~~~s~~~a~~iD~Ev~~il~~ay~~A~~lL~~nr~~L~~lA~~LlekEtL~g~ei~~il~ 641 (704)
++||++++..+|+||+++|++||++|+++|++||+.|++||++|+++|+|+++||++|++
T Consensus 436 ~~~s~~~~~~id~~v~~lL~~a~~ra~~lL~~~~~~l~~la~~Ll~~e~L~~~ei~~il~ 495 (495)
T TIGR01241 436 KEYSEETAREIDEEVKRIIEEAYKRAKQILTENRDELELLAKALLEKETITREEIKELLA 495 (495)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCeeCHHHHHHHhC
Confidence 689999999999999999999999999999999999999999999999999999999974
No 7
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-57 Score=469.89 Aligned_cols=246 Identities=35% Similarity=0.608 Sum_probs=235.3
Q ss_pred ccCCCccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCcccc
Q 005285 163 VSDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (704)
Q Consensus 163 ~~~~~~~f~dVvG~~~~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~ 241 (704)
++.|.++|+||.|.++.+++|+|.++. |++|+.|.++|+.+|+|||||||||||||+||||+|++.++.|+.+.+|+|+
T Consensus 143 ~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElV 222 (406)
T COG1222 143 EEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELV 222 (406)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHH
Confidence 478899999999999999999999985 9999999999999999999999999999999999999999999999999999
Q ss_pred ch-hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCC----CCChhHHHHHHHHHHHhcCCcccCCccccccCccEEE
Q 005285 242 DS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHA----RKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (704)
Q Consensus 242 ~~-~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~----~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (704)
.+ .|.|+..+|++|..|+.++||||||||||+++++|. +++.+..+|+-+||++||||... .+|-|
T Consensus 223 qKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~---------~nvKV 293 (406)
T COG1222 223 QKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR---------GNVKV 293 (406)
T ss_pred HHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC---------CCeEE
Confidence 99 589999999999999999999999999999998763 56788899999999999997654 45999
Q ss_pred EEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 005285 317 ICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSV 396 (704)
Q Consensus 317 IaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~ 396 (704)
|+|||+++.|||||+|||||||.|+||+||.++|.+||+.|.+++.+..++|++.||+.|.|+|||||.++|.||.+.|.
T Consensus 294 I~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~Ai 373 (406)
T COG1222 294 IMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAI 373 (406)
T ss_pred EEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCcccHHHHHHHHHHHHH
Q 005285 397 RKGHSKIQQQDIVDVLDKQLL 417 (704)
Q Consensus 397 r~~~~~It~~dl~~Al~~~~~ 417 (704)
|+.+..|+++|+.+|+++++.
T Consensus 374 R~~R~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 374 RERRDEVTMEDFLKAVEKVVK 394 (406)
T ss_pred HhccCeecHHHHHHHHHHHHh
Confidence 999999999999999999863
No 8
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=5.4e-54 Score=515.04 Aligned_cols=309 Identities=18% Similarity=0.208 Sum_probs=259.3
Q ss_pred hhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccchh-----------------------------
Q 005285 194 MQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE----------------------------- 244 (704)
Q Consensus 194 ~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~~----------------------------- 244 (704)
..+.++|+.+|+||||+||||||||+||||+|+++++||+.+++++|.+..
T Consensus 1620 P~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~ 1699 (2281)
T CHL00206 1620 PFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDT 1699 (2281)
T ss_pred CHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccch
Confidence 355678999999999999999999999999999999999999999987421
Q ss_pred ---------------hhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccc
Q 005285 245 ---------------KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFS 309 (704)
Q Consensus 245 ---------------~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~ 309 (704)
+.+..+++.+|+.|++.+||||||||||+++.+ ++...++++|+.+||+.....
T Consensus 1700 e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~-----ds~~ltL~qLLneLDg~~~~~------ 1768 (2281)
T CHL00206 1700 ELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVN-----ESNYLSLGLLVNSLSRDCERC------ 1768 (2281)
T ss_pred hhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCC-----ccceehHHHHHHHhccccccC------
Confidence 123345899999999999999999999999754 233457899999999864321
Q ss_pred cCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHH--hcCCCcccc-ccHHHHHHhccCCCHHHHHH
Q 005285 310 LRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVH--SAGKQLAED-VNFEELVFRTVGFSGADIRN 386 (704)
Q Consensus 310 ~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~--l~~~~l~~d-vdl~~La~~t~G~sgadL~~ 386 (704)
...+|+||||||+|+.|||||+||||||++|+|+.|+..+|++++..+ .++..+..+ +|+..+|+.|.|||||||++
T Consensus 1769 s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLan 1848 (2281)
T CHL00206 1769 STRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVA 1848 (2281)
T ss_pred CCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHH
Confidence 234699999999999999999999999999999999999999998854 445555543 68999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhccccccchhhhhhhccchhhHHHHHHHHHHHHHHHHHhhcCCCcccce
Q 005285 387 LVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAF 466 (704)
Q Consensus 387 Lv~eA~~~A~r~~~~~It~~dl~~Al~~~~~~~~g~~~~~~~~~~~~~~~~~~~k~~~A~HEaGhalva~~~p~~~~~~~ 466 (704)
|||||++.|+++++..|+.+++..|+++++.+. +. ...+..++ .+|+||+||||+++++++.+++++
T Consensus 1849 LvNEAaliAirq~ks~Id~~~I~~Al~Rq~~g~----------~~--~~~~~~~~-~ia~yEiGhAvvq~~L~~~~pv~k 1915 (2281)
T CHL00206 1849 LTNEALSISITQKKSIIDTNTIRSALHRQTWDL----------RS--QVRSVQDH-GILFYQIGRAVAQNVLLSNCPIDP 1915 (2281)
T ss_pred HHHHHHHHHHHcCCCccCHHHHHHHHHHHHhhh----------hh--cccCcchh-hhhhhHHhHHHHHHhccCCCCcce
Confidence 999999999999999999999999999997432 11 12223333 369999999999999999999999
Q ss_pred eeeccC------CceeeEEEecccccccccccccHHHHHHHHHHHhhhhHHHHhHcCCCCCCCCchhHHHHHHHHHHHHh
Q 005285 467 SQLLPG------GKETAISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDDVTDGGKDDLEKITKIAREMVI 540 (704)
Q Consensus 467 ~~i~p~------~~~~~~t~~~p~e~~~~~~~~t~~~l~~~i~v~LgGRaAEelvfG~~vttGas~DL~~AT~iA~~MV~ 540 (704)
++|.|+ |...++++++|.+ ..+++.+++.+|++||||||||+++|+. .+ .|+.||+
T Consensus 1916 ISIy~~~~~~r~~~~yl~~wyle~~-----~~mkk~tiL~~Il~cLAGraAedlwf~~-~~------------~~~n~It 1977 (2281)
T CHL00206 1916 ISIYMKKKSCKEGDSYLYKWYFELG-----TSMKKLTILLYLLSCSAGSVAQDLWSLP-GP------------DEKNGIT 1977 (2281)
T ss_pred EEEecCCccccCcccceeEeecCCc-----ccCCHHHHHHHHHHHhhhhhhhhhccCc-ch------------hhhcCcc
Confidence 998532 4567999999876 3569999999999999999999999984 22 6788888
Q ss_pred cccc
Q 005285 541 SPQN 544 (704)
Q Consensus 541 ~~~~ 544 (704)
.||+
T Consensus 1978 ~yg~ 1981 (2281)
T CHL00206 1978 SYGL 1981 (2281)
T ss_pred cccc
Confidence 8764
No 9
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.8e-49 Score=434.69 Aligned_cols=244 Identities=33% Similarity=0.565 Sum_probs=229.4
Q ss_pred ccCCCccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCcccc
Q 005285 163 VSDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (704)
Q Consensus 163 ~~~~~~~f~dVvG~~~~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~ 241 (704)
.+.++++|+||.|++++|.+|++.|.| ++.|..|.++|+.+|+|||||||||||||++|||+|.+++.+|+++++.++.
T Consensus 426 ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~ 505 (693)
T KOG0730|consen 426 VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELF 505 (693)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHH
Confidence 467899999999999999999999987 9999999999999999999999999999999999999999999999999999
Q ss_pred ch-hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCC-CChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEE
Q 005285 242 DS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR-KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICA 319 (704)
Q Consensus 242 ~~-~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~-~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaa 319 (704)
++ +|.+++.++++|++|+..+|||||+||||++++.|++ ++.-.++++++||++|||..... +|+||||
T Consensus 506 sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k---------~V~ViAA 576 (693)
T KOG0730|consen 506 SKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALK---------NVLVIAA 576 (693)
T ss_pred HHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccC---------cEEEEec
Confidence 99 6899999999999999999999999999999987743 33456889999999999987654 4999999
Q ss_pred cCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Q 005285 320 TNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKG 399 (704)
Q Consensus 320 TN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r~~ 399 (704)
||+|+.||+|++||||||+.|+||+||.+.|.+||+.++++.++.+++|+.+||..|.|||||||.++|++|++.|.++.
T Consensus 577 TNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~ 656 (693)
T KOG0730|consen 577 TNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRES 656 (693)
T ss_pred cCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred C--CcccHHHHHHHHHHH
Q 005285 400 H--SKIQQQDIVDVLDKQ 415 (704)
Q Consensus 400 ~--~~It~~dl~~Al~~~ 415 (704)
- ..|+.+|+.+|+..+
T Consensus 657 i~a~~i~~~hf~~al~~~ 674 (693)
T KOG0730|consen 657 IEATEITWQHFEEALKAV 674 (693)
T ss_pred cccccccHHHHHHHHHhh
Confidence 5 468999999999865
No 10
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-47 Score=414.19 Aligned_cols=245 Identities=32% Similarity=0.578 Sum_probs=223.4
Q ss_pred cccCCCccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccc
Q 005285 162 YVSDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF 240 (704)
Q Consensus 162 ~~~~~~~~f~dVvG~~~~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~ 240 (704)
...-|+++|+||.+.++++.+|+..+.+ +|+|..|.++|+..|.|||||||||||||+||||+|+|+|.+|++|.+.++
T Consensus 502 F~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPEL 581 (802)
T KOG0733|consen 502 FATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPEL 581 (802)
T ss_pred ceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHH
Confidence 3456899999999999999988887655 999999999999999999999999999999999999999999999999999
Q ss_pred cch-hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCC-CChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEE
Q 005285 241 TDS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR-KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFIC 318 (704)
Q Consensus 241 ~~~-~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~-~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIa 318 (704)
.++ +|..+..+|.+|..|+.++|||||+||+|+|.++|+. +.....+.+||||.+|||...+. +|.||+
T Consensus 582 lNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~---------gV~via 652 (802)
T KOG0733|consen 582 LNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERR---------GVYVIA 652 (802)
T ss_pred HHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhccccccc---------ceEEEe
Confidence 999 5888999999999999999999999999999988754 34556789999999999977655 499999
Q ss_pred EcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhc--CCCccccccHHHHHHhcc--CCCHHHHHHHHHHHHHH
Q 005285 319 ATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA--GKQLAEDVNFEELVFRTV--GFSGADIRNLVNESGIM 394 (704)
Q Consensus 319 aTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~--~~~l~~dvdl~~La~~t~--G~sgadL~~Lv~eA~~~ 394 (704)
|||+||.+|||++||||||+.++|++|+.++|.+||+.+.+ +.++..|+|++.||+.+. |||||||+.||++|++.
T Consensus 653 ATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~ 732 (802)
T KOG0733|consen 653 ATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASIL 732 (802)
T ss_pred ecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 788999999999999987 99999999999999999
Q ss_pred HHHhCC----------------CcccHHHHHHHHHHH
Q 005285 395 SVRKGH----------------SKIQQQDIVDVLDKQ 415 (704)
Q Consensus 395 A~r~~~----------------~~It~~dl~~Al~~~ 415 (704)
|.++.- ..++..|+++|+.++
T Consensus 733 AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i 769 (802)
T KOG0733|consen 733 ALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRI 769 (802)
T ss_pred HHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhc
Confidence 998621 125677899998875
No 11
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-46 Score=405.68 Aligned_cols=229 Identities=34% Similarity=0.571 Sum_probs=213.2
Q ss_pred CCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccch-
Q 005285 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS- 243 (704)
Q Consensus 165 ~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~- 243 (704)
..++.|+|+.|.+..-.+|.+++.++++|+.|..+|+.+|+|||||||||||||+||+|+|+++|+||+.+++.++++.
T Consensus 184 ~snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv 263 (802)
T KOG0733|consen 184 ESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV 263 (802)
T ss_pred CCCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc
Confidence 3477999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChh-HHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCC
Q 005285 244 EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPR-RRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNR 322 (704)
Q Consensus 244 ~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e-~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~ 322 (704)
.|..++++|++|++|+..+|||+||||||+++++|...+.+ .++.+.|||..||+...... ...+|+||+|||+
T Consensus 264 SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~-----~g~~VlVIgATnR 338 (802)
T KOG0733|consen 264 SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKT-----KGDPVLVIGATNR 338 (802)
T ss_pred CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhccccccc-----CCCCeEEEecCCC
Confidence 58899999999999999999999999999999988665444 45788999999999765421 2356999999999
Q ss_pred CCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 005285 323 PDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRK 398 (704)
Q Consensus 323 p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r~ 398 (704)
||.|||||+|+||||+.|.+..|+..+|.+||+..+++..+..++|+.+||..|+||.||||..||.+|+..|+++
T Consensus 339 PDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR 414 (802)
T KOG0733|consen 339 PDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKR 414 (802)
T ss_pred CcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999987
No 12
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-44 Score=356.30 Aligned_cols=245 Identities=33% Similarity=0.546 Sum_probs=231.1
Q ss_pred ccCCCccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCcccc
Q 005285 163 VSDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (704)
Q Consensus 163 ~~~~~~~f~dVvG~~~~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~ 241 (704)
.+++.++|.||.|.+-.|+++++.++. |.....|.+.|+.+|+|||||||||||||+||+|+|+.....|+.+.+++|+
T Consensus 147 ~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefv 226 (408)
T KOG0727|consen 147 DEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 226 (408)
T ss_pred CCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHH
Confidence 468999999999999999999999986 7888999999999999999999999999999999999999999999999999
Q ss_pred ch-hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccC----CCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEE
Q 005285 242 DS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRH----ARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (704)
Q Consensus 242 ~~-~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~----~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (704)
.. .|.|...+|++|..|+.++|+||||||+|+++.++ .+.+.+..+.+-.||++||||....+ |-|
T Consensus 227 qkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~n---------vkv 297 (408)
T KOG0727|consen 227 QKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTN---------VKV 297 (408)
T ss_pred HHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccc---------eEE
Confidence 99 58999999999999999999999999999998765 35677888899999999999877654 899
Q ss_pred EEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 005285 317 ICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSV 396 (704)
Q Consensus 317 IaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~ 396 (704)
|++||+.+.|||||+||||+||.|+||+||..+++-+|.....++.+.+++|++.+..+....||+||..+|++|.+.|.
T Consensus 298 imatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~av 377 (408)
T KOG0727|consen 298 IMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAV 377 (408)
T ss_pred EEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCcccHHHHHHHHHHHH
Q 005285 397 RKGHSKIQQQDIVDVLDKQL 416 (704)
Q Consensus 397 r~~~~~It~~dl~~Al~~~~ 416 (704)
|+++-.|.+.|++++...++
T Consensus 378 r~nryvvl~kd~e~ay~~~v 397 (408)
T KOG0727|consen 378 RENRYVVLQKDFEKAYKTVV 397 (408)
T ss_pred HhcceeeeHHHHHHHHHhhc
Confidence 99999999999999988764
No 13
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-43 Score=353.00 Aligned_cols=245 Identities=31% Similarity=0.535 Sum_probs=230.2
Q ss_pred cCCCccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccc
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~ 242 (704)
+-|+.+|+-|.|.+...++++++++. .+.|+.|..+|+..|+|+|||||||||||+||+|+|+...+.|+.+|+++++.
T Consensus 140 KvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvq 219 (404)
T KOG0728|consen 140 KVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 219 (404)
T ss_pred hCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHH
Confidence 45678898888889888899999885 89999999999999999999999999999999999999999999999999999
Q ss_pred h-hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccC----CCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEE
Q 005285 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRH----ARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (704)
Q Consensus 243 ~-~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~----~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (704)
. .|.|+..+|++|-.|+.++|+|||.||||++++.+ .+++++..+++-.||+++|||....+ +-||
T Consensus 220 k~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatkn---------ikvi 290 (404)
T KOG0728|consen 220 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKN---------IKVI 290 (404)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccc---------eEEE
Confidence 8 48999999999999999999999999999998755 35678889999999999999876554 8999
Q ss_pred EEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 005285 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVR 397 (704)
Q Consensus 318 aaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r 397 (704)
.|||+.|.|||||+||||+||.|+||+|+.+.|.+||+.|.++..+...+++..+|...+|.||+++..+|.+|.++|.|
T Consensus 291 matnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alr 370 (404)
T KOG0728|consen 291 MATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALR 370 (404)
T ss_pred EeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcccHHHHHHHHHHHHH
Q 005285 398 KGHSKIQQQDIVDVLDKQLL 417 (704)
Q Consensus 398 ~~~~~It~~dl~~Al~~~~~ 417 (704)
+.+-.+|++|++-|+.+++.
T Consensus 371 errvhvtqedfemav~kvm~ 390 (404)
T KOG0728|consen 371 ERRVHVTQEDFEMAVAKVMQ 390 (404)
T ss_pred HhhccccHHHHHHHHHHHHh
Confidence 99999999999999999874
No 14
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.7e-44 Score=355.77 Aligned_cols=246 Identities=35% Similarity=0.578 Sum_probs=232.4
Q ss_pred ccCCCccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCcccc
Q 005285 163 VSDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (704)
Q Consensus 163 ~~~~~~~f~dVvG~~~~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~ 241 (704)
++++.+||.||.|+.+..+.|+++++. +.+|++|..+|+.+|+|||||||||||||++|||+|+..+..|+.+-+|+++
T Consensus 169 eekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselv 248 (435)
T KOG0729|consen 169 EEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELV 248 (435)
T ss_pred ecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHH
Confidence 578999999999999999999999986 8999999999999999999999999999999999999999999999999999
Q ss_pred ch-hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccC----CCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEE
Q 005285 242 DS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRH----ARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (704)
Q Consensus 242 ~~-~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~----~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (704)
.. ++.|+..+|++|+.|+....||||+||||++++.+ .+++.+..+++-.|++++|||..+ .++-|
T Consensus 249 qkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdpr---------gnikv 319 (435)
T KOG0729|consen 249 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPR---------GNIKV 319 (435)
T ss_pred HHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCC---------CCeEE
Confidence 98 68999999999999999999999999999998765 356778889999999999997654 45899
Q ss_pred EEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 005285 317 ICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSV 396 (704)
Q Consensus 317 IaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~ 396 (704)
+++||+|+.|||||+||||+||.++|.+||.++|..||+.|.+.+....|+-++.||+..+.-+|++|+.+|.+|.+.|+
T Consensus 320 lmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfai 399 (435)
T KOG0729|consen 320 LMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAI 399 (435)
T ss_pred EeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCcccHHHHHHHHHHHHH
Q 005285 397 RKGHSKIQQQDIVDVLDKQLL 417 (704)
Q Consensus 397 r~~~~~It~~dl~~Al~~~~~ 417 (704)
|..+...|..|+.+|+++++.
T Consensus 400 rarrk~atekdfl~av~kvvk 420 (435)
T KOG0729|consen 400 RARRKVATEKDFLDAVNKVVK 420 (435)
T ss_pred HHHhhhhhHHHHHHHHHHHHH
Confidence 998899999999999999874
No 15
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-43 Score=352.70 Aligned_cols=245 Identities=31% Similarity=0.528 Sum_probs=226.2
Q ss_pred ccCCCccccceecCcccHHHHHH-HHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCcccc
Q 005285 163 VSDTKSMYKEVVLGGDVWDLLDE-LMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (704)
Q Consensus 163 ~~~~~~~f~dVvG~~~~k~~L~e-lv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~ 241 (704)
.++|.-+|.||.|.+...++|.+ ++-.+..+++|..+|+++|+|+|+|||||||||++|||.|...+..|+.+.+..++
T Consensus 163 DekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLV 242 (424)
T KOG0652|consen 163 DEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 242 (424)
T ss_pred ccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHH
Confidence 46788899999999865555444 44568888999999999999999999999999999999999999999999999999
Q ss_pred ch-hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCC----CCChhHHHHHHHHHHHhcCCcccCCccccccCccEEE
Q 005285 242 DS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHA----RKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (704)
Q Consensus 242 ~~-~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~----~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (704)
.+ .|.|+..+|+.|..|+..+|+||||||+|+++.+|. .++.+..+++-.||+++|||.+.. .|-|
T Consensus 243 QMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~---------~vKv 313 (424)
T KOG0652|consen 243 QMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDD---------RVKV 313 (424)
T ss_pred hhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCcc---------ceEE
Confidence 99 489999999999999999999999999999987763 457788899999999999977654 4999
Q ss_pred EEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 005285 317 ICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSV 396 (704)
Q Consensus 317 IaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~ 396 (704)
|++||+.+.|||||+|.||+||.|+||.|+.+.|.+|++.|.+++...+|+++++||+.|.+|+|++...+|-+|.+.|.
T Consensus 314 iAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiAL 393 (424)
T KOG0652|consen 314 IAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIAL 393 (424)
T ss_pred EeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCcccHHHHHHHHHHHH
Q 005285 397 RKGHSKIQQQDIVDVLDKQL 416 (704)
Q Consensus 397 r~~~~~It~~dl~~Al~~~~ 416 (704)
|++...|+.+|+.+++..+.
T Consensus 394 Rr~atev~heDfmegI~eVq 413 (424)
T KOG0652|consen 394 RRGATEVTHEDFMEGILEVQ 413 (424)
T ss_pred hcccccccHHHHHHHHHHHH
Confidence 99999999999999998764
No 16
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-44 Score=361.35 Aligned_cols=247 Identities=35% Similarity=0.580 Sum_probs=231.8
Q ss_pred ccCCCccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCcccc
Q 005285 163 VSDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (704)
Q Consensus 163 ~~~~~~~f~dVvG~~~~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~ 241 (704)
++.|.-+|.|+.|.++..+++++.++. |.+|+.|..+|+++|+||+|||+||||||+||+|+|+.....|+.+-++++.
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLi 256 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELI 256 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHH
Confidence 467788999999999999999999985 9999999999999999999999999999999999999999999999999999
Q ss_pred ch-hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccC----CCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEE
Q 005285 242 DS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRH----ARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (704)
Q Consensus 242 ~~-~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~----~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (704)
.. .+.|...+|.+|+.|..++|+|+||||||+++.+| +++..+..+++-.||+++|||..+. .|-|
T Consensus 257 QkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrg---------DvKv 327 (440)
T KOG0726|consen 257 QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRG---------DVKV 327 (440)
T ss_pred HHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccC---------CeEE
Confidence 88 58999999999999999999999999999999776 3455667789999999999987654 4999
Q ss_pred EEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 005285 317 ICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSV 396 (704)
Q Consensus 317 IaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~ 396 (704)
|+|||+.+.|||||+||||+||.|+|+.||...+..||..|..++.+..+++++.+...-..+||+||.++|.+|.++|.
T Consensus 328 imATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAl 407 (440)
T KOG0726|consen 328 IMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLAL 407 (440)
T ss_pred EEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCcccHHHHHHHHHHHHHh
Q 005285 397 RKGHSKIQQQDIVDVLDKQLLE 418 (704)
Q Consensus 397 r~~~~~It~~dl~~Al~~~~~~ 418 (704)
|..+..++++|+..|.++++..
T Consensus 408 RerRm~vt~~DF~ka~e~V~~~ 429 (440)
T KOG0726|consen 408 RERRMKVTMEDFKKAKEKVLYK 429 (440)
T ss_pred HHHHhhccHHHHHHHHHHHHHh
Confidence 9999999999999999998764
No 17
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-42 Score=362.72 Aligned_cols=244 Identities=30% Similarity=0.512 Sum_probs=215.7
Q ss_pred cCCCccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccc
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~ 242 (704)
..+++.|+||+|..++|+.|+|.|-. +..|+ |.+...++.+|||++||||||||+||||||.|+|..||.|+.+.+.+
T Consensus 205 ~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe-~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltS 283 (491)
T KOG0738|consen 205 RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPE-FFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTS 283 (491)
T ss_pred cCCCcChHhhcchHHHHHHHHHHHhhhhhhHH-HHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhh
Confidence 46789999999999999999998765 66664 55556788999999999999999999999999999999999999999
Q ss_pred hh-hhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCC--CChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEE
Q 005285 243 SE-KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR--KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICA 319 (704)
Q Consensus 243 ~~-~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~--~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaa 319 (704)
++ |..++.+|-+|+.|+..+|++|||||||+|+++|++ .++..+++.+.||.+|||...... ...-|+|+||
T Consensus 284 KwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e-----~~k~VmVLAA 358 (491)
T KOG0738|consen 284 KWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLE-----NSKVVMVLAA 358 (491)
T ss_pred hhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccc-----cceeEEEEec
Confidence 95 788899999999999999999999999999988754 345567889999999999876432 2334899999
Q ss_pred cCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Q 005285 320 TNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKG 399 (704)
Q Consensus 320 TN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r~~ 399 (704)
||.||.||.||+| ||...|+||+|+.++|..+++..++...+.++++++.|+..+.||||+||.++|++|++.+.|+-
T Consensus 359 TN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~ 436 (491)
T KOG0738|consen 359 TNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRK 436 (491)
T ss_pred cCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 99999999999999999999999999999999999999999999999999999999999999863
Q ss_pred CC-----------------cccHHHHHHHHHHH
Q 005285 400 HS-----------------KIQQQDIVDVLDKQ 415 (704)
Q Consensus 400 ~~-----------------~It~~dl~~Al~~~ 415 (704)
.. .|+.+|++.|+.++
T Consensus 437 i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v 469 (491)
T KOG0738|consen 437 IAGLTPREIRQLAKEEPKMPVTNEDFEEALRKV 469 (491)
T ss_pred HhcCCcHHhhhhhhhccccccchhhHHHHHHHc
Confidence 22 35666777666654
No 18
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=1.5e-42 Score=346.74 Aligned_cols=238 Identities=31% Similarity=0.502 Sum_probs=217.7
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccch
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS 243 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~ 243 (704)
..++++|+||+|++++|..-+-++.||+||+.|..+ .|++||+|||||||||++|||+|+++++||+.+.+.++...
T Consensus 114 ~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGe 190 (368)
T COG1223 114 IISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGE 190 (368)
T ss_pred hhccccHhhhhchHHHHHHHHHHHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHH
Confidence 356789999999999999999999999999988664 58999999999999999999999999999999999999887
Q ss_pred -hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCC--CCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEc
Q 005285 244 -EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHA--RKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (704)
Q Consensus 244 -~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~--~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (704)
+|.++.+++.+|+.|++.+|||+||||+|+++-.|. .-.......+|.||.+|||...+. +|+.|++|
T Consensus 191 hVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~ene---------GVvtIaaT 261 (368)
T COG1223 191 HVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENE---------GVVTIAAT 261 (368)
T ss_pred HhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCC---------ceEEEeec
Confidence 799999999999999999999999999999974432 111224568999999999987655 49999999
Q ss_pred CCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHH-HHHHHHHHHHHHhC
Q 005285 321 NRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIR-NLVNESGIMSVRKG 399 (704)
Q Consensus 321 N~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~-~Lv~eA~~~A~r~~ 399 (704)
|+|+.||+|+++ ||...|+|.+|+.++|..|++.+++..++.-+.+++.++..|.||||+||. .+++.|...|+..+
T Consensus 262 N~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed 339 (368)
T COG1223 262 NRPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAED 339 (368)
T ss_pred CChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhc
Confidence 999999999999 999999999999999999999999999999999999999999999999997 67899999999999
Q ss_pred CCcccHHHHHHHHHHH
Q 005285 400 HSKIQQQDIVDVLDKQ 415 (704)
Q Consensus 400 ~~~It~~dl~~Al~~~ 415 (704)
+..|+.+||..|+.+.
T Consensus 340 ~e~v~~edie~al~k~ 355 (368)
T COG1223 340 REKVEREDIEKALKKE 355 (368)
T ss_pred hhhhhHHHHHHHHHhh
Confidence 9999999999999873
No 19
>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification. ; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....
Probab=100.00 E-value=1.3e-41 Score=345.06 Aligned_cols=211 Identities=36% Similarity=0.533 Sum_probs=167.5
Q ss_pred cHHHHHHHHHHHHHhccccccchhhhhhhccchhhHHHHHHHHHHHHHHHHHhhcCCCcccceeeeccCCceeeEEEecc
Q 005285 404 QQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAISVFYP 483 (704)
Q Consensus 404 t~~dl~~Al~~~~~~~~g~~~~~~~~~~~~~~~~~~~k~~~A~HEaGhalva~~~p~~~~~~~~~i~p~~~~~~~t~~~p 483 (704)
|++||.+|+++++. |. ++....+++++|+++|||||||||+++++|..+++.+++|+|+|..+|++.+.|
T Consensus 1 ~~~d~~~a~drv~~---G~-------~~~~~~~~~~~~~~~A~HEAGhAvva~~l~~~~~v~~vsi~prg~~~G~~~~~~ 70 (213)
T PF01434_consen 1 TMEDIEEAIDRVLM---GP-------EKKSRKLSEEEKRRIAYHEAGHAVVAYLLPPADPVSKVSIVPRGSALGFTQFTP 70 (213)
T ss_dssp -HHHHHHHHHHHHC---CS-------CCTTS---HHHHHHHHHHHHHHHHHHHHSSS---EEEEESSTTCCCCHCCEECH
T ss_pred CHHHHHHHHHHHhc---Cc-------CcCCCCCCHHHHHHHHHHHHHHHHHHHHhcccccEEEEEEecCCCcceeEEecc
Confidence 68999999999974 33 222356788999999999999999999999999999999999999999999999
Q ss_pred cccccccccccHHHHHHHHHHHhhhhHHHHhHcC-CCCCCCCchhHHHHHHHHHHHHhcccccc-cCcccccccccccCC
Q 005285 484 REDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFG-DDVTDGGKDDLEKITKIAREMVISPQNAR-LGLAGLTRRVGLLDR 561 (704)
Q Consensus 484 ~e~~~~~~~~t~~~l~~~i~v~LgGRaAEelvfG-~~vttGas~DL~~AT~iA~~MV~~~~~~~-~g~~~~~~~~g~~~~ 561 (704)
.++.. ..|+++++++|+|+|||||||+++|| +++||||++||++||+||++||.+|||+. +|++.+...
T Consensus 71 ~~~~~---~~t~~~l~~~i~v~LaGraAEe~~~g~~~~stGa~~DL~~At~iA~~mv~~~Gm~~~~g~~~~~~~------ 141 (213)
T PF01434_consen 71 DEDRY---IRTRSYLEDRICVLLAGRAAEELFFGEDNVSTGASSDLQQATEIARKMVASYGMGDSLGLLSYSPN------ 141 (213)
T ss_dssp HTT-S---S-BHHHHHHHHHHHHHHHHHHHHHHSCCS-BGGGHHHHHHHHHHHHHHHHTST-TTTTTSS-SEEE------
T ss_pred chhcc---cccHHHHHhhHHHHHHHHHHHHhhcCcceecccchhHHHHHHHHHHHHHHHhCCCCCCceeeeecc------
Confidence 88743 35999999999999999999999999 46999999999999999999999965443 554443321
Q ss_pred CCCCCCccccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhcccCHHHHHHH
Q 005285 562 PDSSDGDLIKYRWDDPQVIPTDMTLELSELFTRELTRYIEETEELAMNGLRDNKHILEIIAKELLENSRITGLEVEEK 639 (704)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~s~~~a~~iD~Ev~~il~~ay~~A~~lL~~nr~~L~~lA~~LlekEtL~g~ei~~i 639 (704)
.....|++..+. ...++|+++.+.+|+||+++|++||++|++||++||+.|++||++|+++|+|+++||++|
T Consensus 142 --~~~~~~~~~~~~----~~~~~s~~~~~~i~~ev~~lL~~a~~~a~~iL~~~r~~l~~la~~Lle~~~L~~~ei~~I 213 (213)
T PF01434_consen 142 --DDDEVFLGREWN----SRRPMSEETRALIDREVRKLLEEAYARAKEILEENREALEALAEALLEKETLSGEEIEEI 213 (213)
T ss_dssp --E-S-SSS-E-------EEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHH
T ss_pred --cccccccccccc----ccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHhhC
Confidence 111223332221 245789999999999999999999999999999999999999999999999999999986
No 20
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=1.4e-40 Score=365.64 Aligned_cols=244 Identities=33% Similarity=0.531 Sum_probs=224.6
Q ss_pred cCCCccccceecCcccHHHHHHHHH-HhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccc
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMI-YMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~-~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~ 242 (704)
+.++++|+||+|.+.+|++|++.+. ++.+|..|...|..+|+|+|||||||||||++|+++|++++.+|+.++++++..
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 5788999999999999999999987 589999999999999999999999999999999999999999999999999877
Q ss_pred h-hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCC----CChhHHHHHHHHHHHhcCCcccCCccccccCccEEEE
Q 005285 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR----KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (704)
Q Consensus 243 ~-~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~----~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (704)
. .+.+...++.+|..|+..+||||||||+|+++.++.. .+.+....+.+|+..|+++.... +++||
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~---------~v~VI 288 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTT---------NVKVI 288 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCC---------CEEEE
Confidence 7 4677888999999999999999999999999866522 23455678899999999865433 48999
Q ss_pred EEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 005285 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVR 397 (704)
Q Consensus 318 aaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r 397 (704)
+|||+++.||++++||||||+.|+|+.|+.++|.+||+.++.+..+..++|+..++..|.||||+||.++|++|++.|.+
T Consensus 289 ~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r 368 (398)
T PTZ00454 289 MATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVR 368 (398)
T ss_pred EecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcccHHHHHHHHHHHH
Q 005285 398 KGHSKIQQQDIVDVLDKQL 416 (704)
Q Consensus 398 ~~~~~It~~dl~~Al~~~~ 416 (704)
+++..|+++|+.+|+.+++
T Consensus 369 ~~~~~i~~~df~~A~~~v~ 387 (398)
T PTZ00454 369 KNRYVILPKDFEKGYKTVV 387 (398)
T ss_pred cCCCccCHHHHHHHHHHHH
Confidence 9999999999999999875
No 21
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-41 Score=373.32 Aligned_cols=248 Identities=29% Similarity=0.502 Sum_probs=219.7
Q ss_pred CCcccCCCccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCc
Q 005285 160 VGYVSDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGA 238 (704)
Q Consensus 160 ~~~~~~~~~~f~dVvG~~~~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s 238 (704)
.+.++-|+++|+||.|.+++|.++.+-+.. |+.|..|.. |.++..|||||||||||||++|||+|-|+...|++|.+.
T Consensus 661 iGAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGP 739 (953)
T KOG0736|consen 661 IGAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGP 739 (953)
T ss_pred cCCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCH
Confidence 445678999999999999999988887765 777766654 888899999999999999999999999999999999999
Q ss_pred cccch-hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCC---hhHHHHHHHHHHHhcCCcccCCccccccCccE
Q 005285 239 EFTDS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKD---PRRRATFEALIAQLDGDKERTGIDRFSLRQAV 314 (704)
Q Consensus 239 ~~~~~-~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~---~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~V 314 (704)
++.+| +|..++++|++|++||..+|||||+||+|++++.|+..+ .-.++++.|||.+||+....+ ...|
T Consensus 740 ELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~-------s~~V 812 (953)
T KOG0736|consen 740 ELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSS-------SQDV 812 (953)
T ss_pred HHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCC-------CCce
Confidence 99999 589999999999999999999999999999998775432 335889999999999987532 3469
Q ss_pred EEEEEcCCCCCCcccccCCCccceeeeeCCC-CHHHHHHHHHHHhcCCCccccccHHHHHHhc-cCCCHHHHHHHHHHHH
Q 005285 315 IFICATNRPDELDLEFVRPGRIDRRLYIGLP-DAKQRVQIFDVHSAGKQLAEDVNFEELVFRT-VGFSGADIRNLVNESG 392 (704)
Q Consensus 315 iVIaaTN~p~~LD~aLlRpgRfd~~I~v~~P-d~~eR~~Il~~~l~~~~l~~dvdl~~La~~t-~G~sgadL~~Lv~eA~ 392 (704)
.||+||||||.|||||+||||||+-++++++ |.+.+..+|+...++..+..++|+.++|+.. +.|||||+-.||.+|.
T Consensus 813 FViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~ 892 (953)
T KOG0736|consen 813 FVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAM 892 (953)
T ss_pred EEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHH
Confidence 9999999999999999999999999999987 6788999999999999999999999999985 5799999999999999
Q ss_pred HHHHHhCC-----------------CcccHHHHHHHHHHH
Q 005285 393 IMSVRKGH-----------------SKIQQQDIVDVLDKQ 415 (704)
Q Consensus 393 ~~A~r~~~-----------------~~It~~dl~~Al~~~ 415 (704)
+.|+++-. -.|+++|+.++.++-
T Consensus 893 l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l 932 (953)
T KOG0736|consen 893 LAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRL 932 (953)
T ss_pred HHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhc
Confidence 99988621 137888998888764
No 22
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=4.1e-39 Score=356.23 Aligned_cols=245 Identities=35% Similarity=0.576 Sum_probs=224.7
Q ss_pred cCCCccccceecCcccHHHHHHHHH-HhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccc
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMI-YMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~-~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~ 242 (704)
+.+..+|+||.|.++.++.|++++. .+.+|..|..+|+.+|+|+|||||||||||++|+++|++++.+|+.++++++..
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 5678999999999999999999997 489999999999999999999999999999999999999999999999999887
Q ss_pred h-hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCC----CCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEE
Q 005285 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHA----RKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (704)
Q Consensus 243 ~-~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~----~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (704)
. .+.+...++.+|..|+.+.||||||||||+++.++. +++.+...++.++|.+|+++... .++.||
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~---------~~V~VI 326 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR---------GDVKVI 326 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc---------CCeEEE
Confidence 7 467778899999999999999999999999987653 23445567888999999986543 348999
Q ss_pred EEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 005285 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVR 397 (704)
Q Consensus 318 aaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r 397 (704)
+|||+++.||++++||||||+.|+|+.||.++|.+||+.|+.+..+..++++..++..+.||||+||.++|++|++.|.+
T Consensus 327 ~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr 406 (438)
T PTZ00361 327 MATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALR 406 (438)
T ss_pred EecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999898999999999999999999999999999999999
Q ss_pred hCCCcccHHHHHHHHHHHHH
Q 005285 398 KGHSKIQQQDIVDVLDKQLL 417 (704)
Q Consensus 398 ~~~~~It~~dl~~Al~~~~~ 417 (704)
+++..|+++|+.+|+++++.
T Consensus 407 ~~r~~Vt~~D~~~A~~~v~~ 426 (438)
T PTZ00361 407 ERRMKVTQADFRKAKEKVLY 426 (438)
T ss_pred hcCCccCHHHHHHHHHHHHh
Confidence 99999999999999999763
No 23
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=7.5e-39 Score=352.77 Aligned_cols=244 Identities=35% Similarity=0.604 Sum_probs=223.3
Q ss_pred cCCCccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccc
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~ 242 (704)
+.++++|+||.|.++.++.|.+.+.+ +.+|..|...|+.+|+|||||||||||||++|+++|++++.+|+.++++++..
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 56789999999999999999998865 89999999999999999999999999999999999999999999999999987
Q ss_pred h-hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCC----CChhHHHHHHHHHHHhcCCcccCCccccccCccEEEE
Q 005285 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR----KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (704)
Q Consensus 243 ~-~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~----~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (704)
. .+.+...++.+|..|+..+||||||||+|++++++.. ++.+..+++.+++.+++++... .+++||
T Consensus 204 ~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~---------~~v~VI 274 (389)
T PRK03992 204 KFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR---------GNVKII 274 (389)
T ss_pred hhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC---------CCEEEE
Confidence 7 4667788999999999999999999999999866532 2345567888999999886543 348999
Q ss_pred EEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 005285 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVR 397 (704)
Q Consensus 318 aaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r 397 (704)
+|||+++.+|++++||||||+.|+|++|+.++|.+||+.|+++..+..++++..++..|.||+|+||+++|++|++.|.+
T Consensus 275 ~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~ 354 (389)
T PRK03992 275 AATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIR 354 (389)
T ss_pred EecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998888889999999999999999999999999999999
Q ss_pred hCCCcccHHHHHHHHHHHH
Q 005285 398 KGHSKIQQQDIVDVLDKQL 416 (704)
Q Consensus 398 ~~~~~It~~dl~~Al~~~~ 416 (704)
++...|+.+||.+|++++.
T Consensus 355 ~~~~~i~~~d~~~A~~~~~ 373 (389)
T PRK03992 355 DDRTEVTMEDFLKAIEKVM 373 (389)
T ss_pred cCCCCcCHHHHHHHHHHHh
Confidence 9999999999999999875
No 24
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.5e-38 Score=355.30 Aligned_cols=244 Identities=38% Similarity=0.626 Sum_probs=224.0
Q ss_pred ccCCCccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCcccc
Q 005285 163 VSDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (704)
Q Consensus 163 ~~~~~~~f~dVvG~~~~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~ 241 (704)
...+.++|+|+.|.+++|+.+++.+.+ ++.|..|...|.++|+|+|||||||||||++|+|+|.+++.+|+.+.++++.
T Consensus 234 ~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~ 313 (494)
T COG0464 234 FEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELL 313 (494)
T ss_pred cCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHh
Confidence 357889999999999999999999987 7788888888999999999999999999999999999999999999999999
Q ss_pred ch-hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChh-HHHHHHHHHHHhcCCcccCCccccccCccEEEEEE
Q 005285 242 DS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPR-RRATFEALIAQLDGDKERTGIDRFSLRQAVIFICA 319 (704)
Q Consensus 242 ~~-~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e-~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaa 319 (704)
++ .+..++.++.+|..|++.+||||||||+|++++.+...... ....+++|+.+|++.....+ |+||+|
T Consensus 314 sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~---------v~vi~a 384 (494)
T COG0464 314 SKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEG---------VLVIAA 384 (494)
T ss_pred ccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCc---------eEEEec
Confidence 88 68899999999999999999999999999999877544433 35899999999999776544 999999
Q ss_pred cCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCC--ccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 005285 320 TNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQ--LAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVR 397 (704)
Q Consensus 320 TN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~--l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r 397 (704)
||+|+.+|+|++||||||+.++|++||.++|.+||+.|+.... +..++|+..++..|.||||+||.++|++|++.+.+
T Consensus 385 TN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~ 464 (494)
T COG0464 385 TNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALR 464 (494)
T ss_pred CCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998443 46789999999999999999999999999999999
Q ss_pred hC-CCcccHHHHHHHHHHH
Q 005285 398 KG-HSKIQQQDIVDVLDKQ 415 (704)
Q Consensus 398 ~~-~~~It~~dl~~Al~~~ 415 (704)
+. ...|+++|+.+|+.++
T Consensus 465 ~~~~~~~~~~~~~~a~~~~ 483 (494)
T COG0464 465 EARRREVTLDDFLDALKKI 483 (494)
T ss_pred HhccCCccHHHHHHHHHhc
Confidence 98 6789999999999873
No 25
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-38 Score=347.92 Aligned_cols=226 Identities=30% Similarity=0.525 Sum_probs=209.3
Q ss_pred cCCCccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccc
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~ 242 (704)
+.....|+||.|..++|+.|++++.| -+.|..|...+++.+.|||||||||||||+||-|+|..++..|+++.+.++..
T Consensus 660 k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~ 739 (952)
T KOG0735|consen 660 KSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLS 739 (952)
T ss_pred ccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHH
Confidence 34458999999999999999999998 67788999999999999999999999999999999999999999999999999
Q ss_pred hh-hhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCC-hhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEc
Q 005285 243 SE-KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKD-PRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (704)
Q Consensus 243 ~~-~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~-~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (704)
++ |..+..+|++|.+|+..+|||||+||+|+++++|+..+ .-.++++||||.+|||...-. ||.|+|||
T Consensus 740 KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~---------GV~i~aaT 810 (952)
T KOG0735|consen 740 KYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLD---------GVYILAAT 810 (952)
T ss_pred HHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccc---------eEEEEEec
Confidence 95 77888999999999999999999999999999875433 345789999999999976544 59999999
Q ss_pred CCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 005285 321 NRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRK 398 (704)
Q Consensus 321 N~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r~ 398 (704)
.|||.|||||+||||+|+.++-+.|+..+|.+|++........+.++|++.+|..|.|||||||+.|+-+|.+.|+.+
T Consensus 811 sRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 811 SRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred CCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998899999999999999999999999999999999998765
No 26
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-39 Score=325.45 Aligned_cols=225 Identities=29% Similarity=0.505 Sum_probs=200.4
Q ss_pred ccCCCccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCcccc
Q 005285 163 VSDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (704)
Q Consensus 163 ~~~~~~~f~dVvG~~~~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~ 241 (704)
.++|++.|+||+|.+.+|+.|+|.|.. ++-|..|. .+.++.+|+||||||||||++||+|+|-|++..||++|.++++
T Consensus 125 ~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFt-GkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLv 203 (439)
T KOG0739|consen 125 REKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFT-GKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 203 (439)
T ss_pred ccCCCCchhhhccchhHHHHHHhheeecccchhhhc-CCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHH
Confidence 368999999999999999999998764 55665554 3566789999999999999999999999999999999999999
Q ss_pred chh-hhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCC-ChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEE
Q 005285 242 DSE-KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK-DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICA 319 (704)
Q Consensus 242 ~~~-~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~-~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaa 319 (704)
+.+ |..+..++.+|+.|+.+.|+||||||||++++.+..+ ++..+++-..||.+|.|...+ .++|+|++|
T Consensus 204 SKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d--------~~gvLVLgA 275 (439)
T KOG0739|consen 204 SKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGND--------NDGVLVLGA 275 (439)
T ss_pred HHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccC--------CCceEEEec
Confidence 994 7888999999999999999999999999999877654 444567888999999997654 357999999
Q ss_pred cCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCc-cccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 005285 320 TNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQL-AEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRK 398 (704)
Q Consensus 320 TN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l-~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r~ 398 (704)
||-||.||.|++| ||++.|++|+|+...|..+|+.|+...+. ..+.|+..|++.|.||||+||.-+|+.|.+..+|+
T Consensus 276 TNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRk 353 (439)
T KOG0739|consen 276 TNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRK 353 (439)
T ss_pred CCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHH
Confidence 9999999999999 99999999999999999999999987664 35679999999999999999999999999888765
No 27
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=2.1e-37 Score=366.89 Aligned_cols=243 Identities=36% Similarity=0.585 Sum_probs=220.4
Q ss_pred cCCCccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccc
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~ 242 (704)
+.+.++|+||+|.+++|+.|++.+.+ ++.|..|...|.++|+|+|||||||||||++|+++|++++.+|+.++++++..
T Consensus 446 ~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~ 525 (733)
T TIGR01243 446 EVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILS 525 (733)
T ss_pred cccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhh
Confidence 45678999999999999999999986 88999999999999999999999999999999999999999999999999988
Q ss_pred h-hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCC--ChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEE
Q 005285 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK--DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICA 319 (704)
Q Consensus 243 ~-~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~--~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaa 319 (704)
. .+.+...++.+|..|+..+||||||||||+++++++.. ....+..+++||.+||+.... .+|+||+|
T Consensus 526 ~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~---------~~v~vI~a 596 (733)
T TIGR01243 526 KWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQEL---------SNVVVIAA 596 (733)
T ss_pred cccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCC---------CCEEEEEe
Confidence 7 57788899999999999999999999999998766432 233567899999999986543 34999999
Q ss_pred cCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Q 005285 320 TNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKG 399 (704)
Q Consensus 320 TN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r~~ 399 (704)
||+|+.||+|++||||||+.|++++|+.++|.+||+.+.++.++..++|+..||..|.||||+||.++|++|++.|.++.
T Consensus 597 Tn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~ 676 (733)
T TIGR01243 597 TNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRES 676 (733)
T ss_pred CCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998842
Q ss_pred ------------------CCcccHHHHHHHHHHH
Q 005285 400 ------------------HSKIQQQDIVDVLDKQ 415 (704)
Q Consensus 400 ------------------~~~It~~dl~~Al~~~ 415 (704)
...|+.+|+.+|+.++
T Consensus 677 ~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~ 710 (733)
T TIGR01243 677 IGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKV 710 (733)
T ss_pred hhhccchhhhcccccccccCcccHHHHHHHHHHc
Confidence 1258899999999874
No 28
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=6e-37 Score=343.65 Aligned_cols=238 Identities=24% Similarity=0.359 Sum_probs=207.1
Q ss_pred CCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccch-
Q 005285 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS- 243 (704)
Q Consensus 165 ~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~- 243 (704)
.+..+|+||.|.+.+|+.+++....+ +..+...|.+.|+|+|||||||||||++|+++|++++.||+.++++.+...
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~~~~--~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRSTSF--SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHh--hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 45688999999999999888765433 334566789999999999999999999999999999999999999998887
Q ss_pred hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCC--CCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcC
Q 005285 244 EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHA--RKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATN 321 (704)
Q Consensus 244 ~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~--~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN 321 (704)
.+.+..+++.+|..|+..+||||||||||.++.++. +.+....+.++.++..|+... .+|+||+|||
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~-----------~~V~vIaTTN 368 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKK-----------SPVFVVATAN 368 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCC-----------CceEEEEecC
Confidence 578888999999999999999999999999976432 233455678889999887522 3489999999
Q ss_pred CCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCc--cccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Q 005285 322 RPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQL--AEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKG 399 (704)
Q Consensus 322 ~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l--~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r~~ 399 (704)
+++.||++++||||||+.++|+.|+.++|.+||+.|+.+... ..+.|+..||..|.||||+||+++|++|...|..++
T Consensus 369 ~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~ 448 (489)
T CHL00195 369 NIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK 448 (489)
T ss_pred ChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999987543 347899999999999999999999999999998776
Q ss_pred CCcccHHHHHHHHHHHH
Q 005285 400 HSKIQQQDIVDVLDKQL 416 (704)
Q Consensus 400 ~~~It~~dl~~Al~~~~ 416 (704)
+ .++.+|+..|+.+..
T Consensus 449 ~-~lt~~dl~~a~~~~~ 464 (489)
T CHL00195 449 R-EFTTDDILLALKQFI 464 (489)
T ss_pred C-CcCHHHHHHHHHhcC
Confidence 4 589999999998754
No 29
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-38 Score=320.33 Aligned_cols=244 Identities=33% Similarity=0.540 Sum_probs=223.3
Q ss_pred cCCCccccceecCcccHHHHHHHHH-HhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccc
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMI-YMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~-~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~ 242 (704)
....++|+.+-|.-+...++++.+. .+.+|..|.+.|+++|+|++||||||||||++|+++|...|++|+.++.+++.+
T Consensus 125 ~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ 204 (388)
T KOG0651|consen 125 DPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVD 204 (388)
T ss_pred CccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhh
Confidence 3456899999988887777777765 599999999999999999999999999999999999999999999999999999
Q ss_pred h-hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCC----CCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEE
Q 005285 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHA----RKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (704)
Q Consensus 243 ~-~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~----~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (704)
. .|..+..+|+.|..|+...|||||+||||++++++. ..+.+...|+-.|+++||++... ..|-+|
T Consensus 205 kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l---------~rVk~I 275 (388)
T KOG0651|consen 205 KYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTL---------HRVKTI 275 (388)
T ss_pred hhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhc---------ccccEE
Confidence 8 478888999999999999999999999999998763 24567788999999999997654 348999
Q ss_pred EEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 005285 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVR 397 (704)
Q Consensus 318 aaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r 397 (704)
+|||+|+.|||+|+||||+|+.+++|+|+...|..|++.|.........+|.+.+.+.+.||.|+|+.|.|.||.+.|++
T Consensus 276 matNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~ 355 (388)
T KOG0651|consen 276 MATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIP 355 (388)
T ss_pred EecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccc
Confidence 99999999999999999999999999999999999999999888888889999999999999999999999999999999
Q ss_pred hCCCcccHHHHHHHHHHHH
Q 005285 398 KGHSKIQQQDIVDVLDKQL 416 (704)
Q Consensus 398 ~~~~~It~~dl~~Al~~~~ 416 (704)
..+..+-++|+..++.++-
T Consensus 356 ~~~~~vl~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 356 EERDEVLHEDFMKLVRKQA 374 (388)
T ss_pred hhhHHHhHHHHHHHHHHHH
Confidence 9999999999999998763
No 30
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.4e-37 Score=320.11 Aligned_cols=227 Identities=32% Similarity=0.553 Sum_probs=205.5
Q ss_pred ccCCCccccceecCcccHHHHHHHHHH-hCCchhhhhcC-CccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccc
Q 005285 163 VSDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERG-VQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF 240 (704)
Q Consensus 163 ~~~~~~~f~dVvG~~~~k~~L~elv~~-l~~p~~~~~~g-~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~ 240 (704)
.....++|+|+.|.+++++.|++.|-. ++.|..|...+ .++|+|||||||||||||++|+|+|.++|.+|+.++.+.+
T Consensus 84 p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~l 163 (386)
T KOG0737|consen 84 PSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNL 163 (386)
T ss_pred hhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeecccc
Confidence 467789999999999999999998875 88888886433 5789999999999999999999999999999999999999
Q ss_pred cch-hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCC-hhHHHHHHHHHHHhcCCcccCCccccccCccEEEEE
Q 005285 241 TDS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKD-PRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFIC 318 (704)
Q Consensus 241 ~~~-~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~-~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIa 318 (704)
.+. ++.+.+.++.+|..|.+.+||||||||+|.+.+.|..++ +.....-+++....||+..+. ...|+|++
T Consensus 164 t~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~-------~~rVlVlg 236 (386)
T KOG0737|consen 164 TSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKD-------SERVLVLG 236 (386)
T ss_pred chhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCC-------CceEEEEe
Confidence 999 688888999999999999999999999999987664443 334566789999999987653 34599999
Q ss_pred EcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 005285 319 ATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRK 398 (704)
Q Consensus 319 aTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r~ 398 (704)
|||+|..||.|++| |+.+.++|+.|+..+|.+||+..+++..+.+++|+..+|..|.||||.||.++|+.|++..+|.
T Consensus 237 ATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire 314 (386)
T KOG0737|consen 237 ATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRE 314 (386)
T ss_pred CCCCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHH
Confidence 99999999999999 9999999999999999999999999999999999999999999999999999999999998875
No 31
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=2.8e-36 Score=330.14 Aligned_cols=244 Identities=35% Similarity=0.596 Sum_probs=220.6
Q ss_pred ccCCCccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCcccc
Q 005285 163 VSDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (704)
Q Consensus 163 ~~~~~~~f~dVvG~~~~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~ 241 (704)
.+.+.++|+||.|.++.++.|.+.+.. +.+|..|...|..+|+|+|||||||||||++|+++|++++.+|+.+.++++.
T Consensus 114 ~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~ 193 (364)
T TIGR01242 114 EERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 193 (364)
T ss_pred ccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHH
Confidence 356789999999999999999998864 8899999999999999999999999999999999999999999999988887
Q ss_pred ch-hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCC----CChhHHHHHHHHHHHhcCCcccCCccccccCccEEE
Q 005285 242 DS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR----KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (704)
Q Consensus 242 ~~-~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~----~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (704)
.. .+.+...++.+|..++...|+||||||+|.++.++.+ ++.+...++.+++.+++++... .++.|
T Consensus 194 ~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~---------~~v~v 264 (364)
T TIGR01242 194 RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR---------GNVKV 264 (364)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC---------CCEEE
Confidence 66 4667778999999999999999999999999765432 3445567888999999886433 24899
Q ss_pred EEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 005285 317 ICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSV 396 (704)
Q Consensus 317 IaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~ 396 (704)
|+|||+++.+|++++||||||+.|+|+.|+.++|.+||+.++.+..+..++++..++..|.||+|+||.++|++|+..|.
T Consensus 265 I~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~ 344 (364)
T TIGR01242 265 IAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAI 344 (364)
T ss_pred EEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988888888999999999999999999999999999999
Q ss_pred HhCCCcccHHHHHHHHHHH
Q 005285 397 RKGHSKIQQQDIVDVLDKQ 415 (704)
Q Consensus 397 r~~~~~It~~dl~~Al~~~ 415 (704)
++++..|+.+|+.+|++++
T Consensus 345 ~~~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 345 REERDYVTMDDFIKAVEKV 363 (364)
T ss_pred HhCCCccCHHHHHHHHHHh
Confidence 9999999999999999875
No 32
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=9.2e-34 Score=317.66 Aligned_cols=246 Identities=26% Similarity=0.406 Sum_probs=197.6
Q ss_pred ccCCCccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC----------
Q 005285 163 VSDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP---------- 231 (704)
Q Consensus 163 ~~~~~~~f~dVvG~~~~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~---------- 231 (704)
++.++++|+||.|.++.++.+++.+.. +.+|..|...|+++|+|+|||||||||||++|+++|++++.+
T Consensus 174 ~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~ 253 (512)
T TIGR03689 174 EEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSY 253 (512)
T ss_pred ecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCcee
Confidence 456889999999999999988888764 889999999999999999999999999999999999998654
Q ss_pred EEEEeCccccch-hhhhHHHHHHHHHHHhhC----CCeEEEEccchhhhccCCC--CChhHHHHHHHHHHHhcCCcccCC
Q 005285 232 FVFASGAEFTDS-EKSGAARINEMFSIARRN----APAFVFVDEIDAIAGRHAR--KDPRRRATFEALIAQLDGDKERTG 304 (704)
Q Consensus 232 ~v~is~s~~~~~-~~~g~~~vr~lF~~Ak~~----~P~ILfIDEiDal~~~~~~--~~~e~~~~ln~LL~~ld~~~~~~~ 304 (704)
|+.++++++... .+.+...++.+|+.|+.. .||||||||+|+++.+++. .++.....+++||.+||++...
T Consensus 254 fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~-- 331 (512)
T TIGR03689 254 FLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL-- 331 (512)
T ss_pred EEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC--
Confidence 566777777776 467788899999998864 6999999999999876543 2333456789999999997543
Q ss_pred ccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcC-CCccc---------cccHHHHHH
Q 005285 305 IDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAG-KQLAE---------DVNFEELVF 374 (704)
Q Consensus 305 ~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~-~~l~~---------dvdl~~La~ 374 (704)
.+|+||+|||+++.||+|++||||||++|+|++|+.++|.+||+.++.. .++.. ..++..+++
T Consensus 332 -------~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~ 404 (512)
T TIGR03689 332 -------DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQ 404 (512)
T ss_pred -------CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHH
Confidence 3489999999999999999999999999999999999999999998764 23311 112222222
Q ss_pred h-----------------------------ccCCCHHHHHHHHHHHHHHHHHh----CCCcccHHHHHHHHHHHHH
Q 005285 375 R-----------------------------TVGFSGADIRNLVNESGIMSVRK----GHSKIQQQDIVDVLDKQLL 417 (704)
Q Consensus 375 ~-----------------------------t~G~sgadL~~Lv~eA~~~A~r~----~~~~It~~dl~~Al~~~~~ 417 (704)
. +..+||++|+++|.+|...|+++ +...|+.+|+..|+..-..
T Consensus 405 ~av~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~~ 480 (512)
T TIGR03689 405 RAVDHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEFR 480 (512)
T ss_pred HHHHHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhhc
Confidence 2 44578888888888888777765 3456888888888876554
No 33
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-34 Score=321.57 Aligned_cols=234 Identities=30% Similarity=0.507 Sum_probs=212.0
Q ss_pred CCccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccch-
Q 005285 166 TKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS- 243 (704)
Q Consensus 166 ~~~~f~dVvG~~~~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~- 243 (704)
..++ .++.|....-..+++.+.+ +..|..|...|.++|+|+|+|||||||||.+++|+|++.++.++.++++++...
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 4455 6777777777778888776 889999999999999999999999999999999999999999999999999988
Q ss_pred hhhhHHHHHHHHHHHhhCC-CeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCC
Q 005285 244 EKSGAARINEMFSIARRNA-PAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNR 322 (704)
Q Consensus 244 ~~~g~~~vr~lF~~Ak~~~-P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~ 322 (704)
.+.+.+.+|..|++|.+++ |+||||||+|++++++...+....++..+|+..||+.... .+++||++||+
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~---------~~vivl~atnr 329 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPD---------AKVIVLAATNR 329 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCc---------CcEEEEEecCC
Confidence 5888999999999999999 9999999999999988766665677899999999997643 34999999999
Q ss_pred CCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCc
Q 005285 323 PDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSK 402 (704)
Q Consensus 323 p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r~~~~~ 402 (704)
|+.||++++| ||||+.+.+..|+..+|.+|++.+.+++++.+++++..+|..|.||+|+||.++|++|++.+.++
T Consensus 330 p~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~---- 404 (693)
T KOG0730|consen 330 PDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR---- 404 (693)
T ss_pred ccccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh----
Confidence 9999999999 99999999999999999999999999999988899999999999999999999999999999887
Q ss_pred ccHHHHHHHHHHH
Q 005285 403 IQQQDIVDVLDKQ 415 (704)
Q Consensus 403 It~~dl~~Al~~~ 415 (704)
+++++..|...+
T Consensus 405 -~~~~~~~A~~~i 416 (693)
T KOG0730|consen 405 -TLEIFQEALMGI 416 (693)
T ss_pred -hHHHHHHHHhcC
Confidence 777877776543
No 34
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.97 E-value=6.7e-31 Score=278.80 Aligned_cols=224 Identities=17% Similarity=0.177 Sum_probs=169.8
Q ss_pred CCccccceecC-cccHHHHHHHHHHh-CCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccch
Q 005285 166 TKSMYKEVVLG-GDVWDLLDELMIYM-GNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS 243 (704)
Q Consensus 166 ~~~~f~dVvG~-~~~k~~L~elv~~l-~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~ 243 (704)
...+|+++.|. --.+.-+..+.-.+ ||-. ...|+++|++++||||||||||++|+++|+++|++|+.++++++.+.
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l--~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk 187 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAKNFL--ALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESE 187 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHhhhh--hccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcC
Confidence 44677777544 33444444443222 2211 12578999999999999999999999999999999999999999988
Q ss_pred -hhhhHHHHHHHHHHHhh-----CCCeEEEEccchhhhccCCCCChh-HHHHH-HHHHHHhcCCcccCCcc---ccccCc
Q 005285 244 -EKSGAARINEMFSIARR-----NAPAFVFVDEIDAIAGRHARKDPR-RRATF-EALIAQLDGDKERTGID---RFSLRQ 312 (704)
Q Consensus 244 -~~~g~~~vr~lF~~Ak~-----~~P~ILfIDEiDal~~~~~~~~~e-~~~~l-n~LL~~ld~~~~~~~~~---~~~~~~ 312 (704)
.|.+++.+|.+|..|+. .+||||||||||++++++.+.+.. ..+.+ .+|++.||+...-.-.. ......
T Consensus 188 ~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~ 267 (413)
T PLN00020 188 NAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIP 267 (413)
T ss_pred cCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCC
Confidence 68999999999999975 469999999999999876543322 23444 78999998742211000 012345
Q ss_pred cEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccC----CCHHHHHHHH
Q 005285 313 AVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVG----FSGADIRNLV 388 (704)
Q Consensus 313 ~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G----~sgadL~~Lv 388 (704)
+|+||+|||+|+.||++|+||||||+.+ ..|+.++|.+||+.++++..+. ..|+..|+..++| |.||--+.+.
T Consensus 268 ~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~y 344 (413)
T PLN00020 268 RVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVY 344 (413)
T ss_pred CceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHH
Confidence 6999999999999999999999999964 6899999999999999988776 5788999998877 5666555555
Q ss_pred HHHHHH
Q 005285 389 NESGIM 394 (704)
Q Consensus 389 ~eA~~~ 394 (704)
.++...
T Consensus 345 d~~v~~ 350 (413)
T PLN00020 345 DDEVRK 350 (413)
T ss_pred HHHHHH
Confidence 554433
No 35
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=6.9e-31 Score=311.40 Aligned_cols=242 Identities=36% Similarity=0.585 Sum_probs=213.9
Q ss_pred CCCccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccch
Q 005285 165 DTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS 243 (704)
Q Consensus 165 ~~~~~f~dVvG~~~~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~ 243 (704)
.++++|+||+|.+++++.+++++.+ ++.|..|..+|+.+|+|+|||||||||||++|+++|++++.+++.++++++...
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 3678999999999999999998875 889999999999999999999999999999999999999999999999998877
Q ss_pred -hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCC-ChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcC
Q 005285 244 -EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK-DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATN 321 (704)
Q Consensus 244 -~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~-~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN 321 (704)
.+.....++.+|+.|....|+||||||||++.+++... +......+++|+..|++.... ..++||++||
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~---------~~vivI~atn 322 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGR---------GRVIVIGATN 322 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccC---------CCEEEEeecC
Confidence 46677889999999999999999999999998765432 223356788999999986543 3489999999
Q ss_pred CCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCC-
Q 005285 322 RPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGH- 400 (704)
Q Consensus 322 ~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r~~~- 400 (704)
+++.||++++|||||++.+.++.|+.++|.+||+.+.+...+..++++..++..|.||+++|+..++++|+..+.++..
T Consensus 323 ~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~ 402 (733)
T TIGR01243 323 RPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIR 402 (733)
T ss_pred ChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999988888889999999999999999999999999998876521
Q ss_pred ------------------CcccHHHHHHHHHHH
Q 005285 401 ------------------SKIQQQDIVDVLDKQ 415 (704)
Q Consensus 401 ------------------~~It~~dl~~Al~~~ 415 (704)
..++.+|+..|+..+
T Consensus 403 ~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v 435 (733)
T TIGR01243 403 EGKINFEAEEIPAEVLKELKVTMKDFMEALKMV 435 (733)
T ss_pred ccccccccccccchhcccccccHHHHHHHHhhc
Confidence 246778888888754
No 36
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.8e-31 Score=288.05 Aligned_cols=256 Identities=27% Similarity=0.454 Sum_probs=206.9
Q ss_pred cCCCccccceecCcccHHHHHH-----HHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCC-CEEEEeC
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDE-----LMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGL-PFVFASG 237 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~e-----lv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~-~~v~is~ 237 (704)
-.|...|+++ |.+...++... +..-+--|..-.++|++.-+|+|||||||||||++||.|..-++. +--.+++
T Consensus 212 i~Pdf~Fe~m-GIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNG 290 (744)
T KOG0741|consen 212 INPDFNFESM-GIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNG 290 (744)
T ss_pred cCCCCChhhc-ccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCc
Confidence 4567788887 33333333333 333455677888899999999999999999999999999987754 5566899
Q ss_pred ccccch-hhhhHHHHHHHHHHHhhCC--------CeEEEEccchhhhccCCC---CChhHHHHHHHHHHHhcCCcccCCc
Q 005285 238 AEFTDS-EKSGAARINEMFSIARRNA--------PAFVFVDEIDAIAGRHAR---KDPRRRATFEALIAQLDGDKERTGI 305 (704)
Q Consensus 238 s~~~~~-~~~g~~~vr~lF~~Ak~~~--------P~ILfIDEiDal~~~~~~---~~~e~~~~ln~LL~~ld~~~~~~~~ 305 (704)
.++.++ +|.+++.+|.+|..|.+.. =-||++||||+++.+|++ +..-.++++||||..|||...
T Consensus 291 PeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeq---- 366 (744)
T KOG0741|consen 291 PEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQ---- 366 (744)
T ss_pred HHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHh----
Confidence 999988 6899999999999886421 259999999999987643 344568899999999999654
Q ss_pred cccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCC----CccccccHHHHHHhccCCCH
Q 005285 306 DRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGK----QLAEDVNFEELVFRTVGFSG 381 (704)
Q Consensus 306 ~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~----~l~~dvdl~~La~~t~G~sg 381 (704)
-++|+||+.|||.|.+|+||+|||||..++++.+||+++|.+|++.|.+++ .+..|+|+.+||.+|..|||
T Consensus 367 -----LNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSG 441 (744)
T KOG0741|consen 367 -----LNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSG 441 (744)
T ss_pred -----hhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCch
Confidence 345999999999999999999999999999999999999999999998654 46789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhC---------------CCcccHHHHHHHHHHHHHhccccccchhhhhhh
Q 005285 382 ADIRNLVNESGIMSVRKG---------------HSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKC 432 (704)
Q Consensus 382 adL~~Lv~eA~~~A~r~~---------------~~~It~~dl~~Al~~~~~~~~g~~~~~~~~~~~ 432 (704)
|+|+.+++.|.-.|..+. .-.|+++|+..|++.+.. ....++++.+++
T Consensus 442 AEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkP---AFG~see~l~~~ 504 (744)
T KOG0741|consen 442 AELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKP---AFGISEEDLERF 504 (744)
T ss_pred hHHHHHHHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCc---ccCCCHHHHHHH
Confidence 999999999998887652 124899999999996542 233455554443
No 37
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.3e-30 Score=304.31 Aligned_cols=243 Identities=31% Similarity=0.534 Sum_probs=209.8
Q ss_pred CCCccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc-----CCCEEEEeCc
Q 005285 165 DTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-----GLPFVFASGA 238 (704)
Q Consensus 165 ~~~~~f~dVvG~~~~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~-----g~~~v~is~s 238 (704)
+..++|++|.|.+.+++.|+|.|.+ |..|+.|..+++.+|+|||||||||||||+.|+|+|..+ .+.|+.-.+.
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkga 338 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGA 338 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCc
Confidence 5678999999999999999999876 889999999999999999999999999999999999877 4678888888
Q ss_pred cccch-hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCC-ChhHHHHHHHHHHHhcCCcccCCccccccCccEEE
Q 005285 239 EFTDS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK-DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (704)
Q Consensus 239 ~~~~~-~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~-~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (704)
+..+. ++.....++.+|+.|+++.|+|||+||||-+++.++.. ......++..||..|||...+ ..|+|
T Consensus 339 D~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsR---------gqVvv 409 (1080)
T KOG0732|consen 339 DCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSR---------GQVVV 409 (1080)
T ss_pred hhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCC---------CceEE
Confidence 88888 57888889999999999999999999999998876443 344567888999999997654 45999
Q ss_pred EEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 005285 317 ICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMS 395 (704)
Q Consensus 317 IaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A 395 (704)
|+|||+|+.+|||++||||||+.++|++|+.+.|.+|+..|.++-.-. ..--+..||..|.||-|+||+.+|.+|++.+
T Consensus 410 igATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~ 489 (1080)
T KOG0732|consen 410 IGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIA 489 (1080)
T ss_pred EcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhh
Confidence 999999999999999999999999999999999999999997654321 1223678999999999999999999999999
Q ss_pred HHhCCC----------------cccHHHHHHHHHHHH
Q 005285 396 VRKGHS----------------KIQQQDIVDVLDKQL 416 (704)
Q Consensus 396 ~r~~~~----------------~It~~dl~~Al~~~~ 416 (704)
.++... .|...|+..|+.++.
T Consensus 490 ~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ 526 (1080)
T KOG0732|consen 490 LRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRIT 526 (1080)
T ss_pred hccccCeeecccccccccchhhhhhhHhhhhhhhccC
Confidence 987432 255667766766654
No 38
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=9.6e-30 Score=276.16 Aligned_cols=226 Identities=31% Similarity=0.453 Sum_probs=196.5
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhCC-chhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccc
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGN-PMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~~-p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~ 242 (704)
..+++.|+|++|.+.+|+.+.+.+.+.-. |..|..+ ..+++|+||.||||||||+|++|||.|++..|+.++++.+..
T Consensus 146 ~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLts 224 (428)
T KOG0740|consen 146 TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTS 224 (428)
T ss_pred cCCcccccCCcchhhHHHHhhhhhhhcccchHhhhcc-ccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhh
Confidence 45678999999999999999999988544 7666543 346799999999999999999999999999999999999999
Q ss_pred h-hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCC-CChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEc
Q 005285 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR-KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (704)
Q Consensus 243 ~-~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~-~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (704)
. .|.++..++.+|..|+..+|+|+||||+|.++.++.. .++.......++|.++++..... .+.|+||+||
T Consensus 225 K~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~-------~drvlvigaT 297 (428)
T KOG0740|consen 225 KYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAP-------DDRVLVIGAT 297 (428)
T ss_pred hccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCC-------CCeEEEEecC
Confidence 9 5888899999999999999999999999999987643 34445577888999988876543 3579999999
Q ss_pred CCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCC-CccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Q 005285 321 NRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGK-QLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKG 399 (704)
Q Consensus 321 N~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~-~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r~~ 399 (704)
|+|+.+|.|++| ||.+.++||+|+.+.|..+|+..+... ....+.|+..|++.|.||||.||.++|.+|++--.+..
T Consensus 298 N~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~ 375 (428)
T KOG0740|consen 298 NRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLREL 375 (428)
T ss_pred CCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhc
Confidence 999999999999 999999999999999999999888765 33456789999999999999999999999997665543
No 39
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=9.9e-25 Score=244.86 Aligned_cols=265 Identities=22% Similarity=0.296 Sum_probs=210.2
Q ss_pred HHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccch-hhhhHHHHHHHHHHHhhC
Q 005285 183 LDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-EKSGAARINEMFSIARRN 261 (704)
Q Consensus 183 L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~-~~~g~~~vr~lF~~Ak~~ 261 (704)
+.++++.+.-+..-...+.+....+||+|+||||||++++++|.++|.+++.++|.++... ....+..+...|.+|+..
T Consensus 410 ~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~ 489 (953)
T KOG0736|consen 410 VLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRC 489 (953)
T ss_pred HHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhc
Confidence 3355555555544445566777889999999999999999999999999999999999887 466778899999999999
Q ss_pred CCeEEEEccchhhhccCCCCChh-HHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccceee
Q 005285 262 APAFVFVDEIDAIAGRHARKDPR-RRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRL 340 (704)
Q Consensus 262 ~P~ILfIDEiDal~~~~~~~~~e-~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I 340 (704)
.|+|||+-++|.++..+.++.+. ..+.++.++. .+.+.. ...+++||++|+..+.+++.+++ -|-..|
T Consensus 490 ~pavifl~~~dvl~id~dgged~rl~~~i~~~ls-~e~~~~--------~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei 558 (953)
T KOG0736|consen 490 SPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLS-NEDFKF--------SCPPVIVVATTSSIEDLPADIQS--LFLHEI 558 (953)
T ss_pred CceEEEEeccceeeecCCCchhHHHHHHHHHHHh-cccccC--------CCCceEEEEeccccccCCHHHHH--hhhhhc
Confidence 99999999999997554443222 2334444444 233221 23459999999999999999998 777899
Q ss_pred eeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHH---hCC-----------------
Q 005285 341 YIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVR---KGH----------------- 400 (704)
Q Consensus 341 ~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r---~~~----------------- 400 (704)
.++.|+.++|.+||++++....+..++.+..++.+|.||+.+|+..++..+.+.+.. +..
T Consensus 559 ~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~ 638 (953)
T KOG0736|consen 559 EVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAG 638 (953)
T ss_pred cCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhcccccccccc
Confidence 999999999999999999999999999999999999999999999998776322221 111
Q ss_pred CcccHHHHHHHHHHHHHhccccccchhhhhhhccchhhHHHHHHHHHHHHHHHHHhhcCCCcccceeeeccCCceeeEEE
Q 005285 401 SKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAISV 480 (704)
Q Consensus 401 ~~It~~dl~~Al~~~~~~~~g~~~~~~~~~~~~~~~~~~~k~~~A~HEaGhalva~~~p~~~~~~~~~i~p~~~~~~~t~ 480 (704)
..++++|+.+|+++. -.|..-||+|+.+|++.|+|++++.-.+.++..|+
T Consensus 639 ~~l~~edf~kals~~------------------------------~~~fs~aiGAPKIPnV~WdDVGGLeevK~eIldTI 688 (953)
T KOG0736|consen 639 FLLTEEDFDKALSRL------------------------------QKEFSDAIGAPKIPNVSWDDVGGLEEVKTEILDTI 688 (953)
T ss_pred ceecHHHHHHHHHHH------------------------------HHhhhhhcCCCCCCccchhcccCHHHHHHHHHHHh
Confidence 235666666666543 23556789999999999999999999999999999
Q ss_pred eccccccc
Q 005285 481 FYPREDTI 488 (704)
Q Consensus 481 ~~p~e~~~ 488 (704)
++|..+..
T Consensus 689 qlPL~hpe 696 (953)
T KOG0736|consen 689 QLPLKHPE 696 (953)
T ss_pred cCcccChh
Confidence 99987753
No 40
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=9.4e-24 Score=222.67 Aligned_cols=232 Identities=26% Similarity=0.429 Sum_probs=179.1
Q ss_pred CCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccchh
Q 005285 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE 244 (704)
Q Consensus 165 ~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~~ 244 (704)
..+..|++||.....+..|+.+...-.|.... -.+-++||||||||||||++||-+|...|..+-.+.+.+.....
T Consensus 349 ~gk~pl~~ViL~psLe~Rie~lA~aTaNTK~h----~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG 424 (630)
T KOG0742|consen 349 RGKDPLEGVILHPSLEKRIEDLAIATANTKKH----QAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLG 424 (630)
T ss_pred cCCCCcCCeecCHHHHHHHHHHHHHhcccccc----cchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccc
Confidence 44556999999999999999988877766433 34678999999999999999999999999999999999998888
Q ss_pred hhhHHHHHHHHHHHhhCC-CeEEEEccchhhhccCC--CCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcC
Q 005285 245 KSGAARINEMFSIARRNA-PAFVFVDEIDAIAGRHA--RKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATN 321 (704)
Q Consensus 245 ~~g~~~vr~lF~~Ak~~~-P~ILfIDEiDal~~~~~--~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN 321 (704)
..+...+..+|++|++.. .-+|||||.|++.-++. ..+...+..+|.||-.--. . ...++++.+||
T Consensus 425 ~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGd-q----------SrdivLvlAtN 493 (630)
T KOG0742|consen 425 AQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD-Q----------SRDIVLVLATN 493 (630)
T ss_pred hHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcc-c----------ccceEEEeccC
Confidence 788889999999998854 56899999999986553 2345567788998865422 1 22489999999
Q ss_pred CCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCc------------------------cc---cccHHHHHH
Q 005285 322 RPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQL------------------------AE---DVNFEELVF 374 (704)
Q Consensus 322 ~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l------------------------~~---dvdl~~La~ 374 (704)
+|..+|.|+-. |||..|+||+|..++|.++|..++.+.-. .. +-.+.+.|.
T Consensus 494 rpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAk 571 (630)
T KOG0742|consen 494 RPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAK 571 (630)
T ss_pred CccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHH
Confidence 99999999998 99999999999999999999987643211 00 112467889
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHH
Q 005285 375 RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLD 413 (704)
Q Consensus 375 ~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al~ 413 (704)
.|.||||++|+.|+--....+.......++..-+++.++
T Consensus 572 kTeGfSGREiakLva~vQAavYgsedcvLd~~lf~e~v~ 610 (630)
T KOG0742|consen 572 KTEGFSGREIAKLVASVQAAVYGSEDCVLDEALFDERVD 610 (630)
T ss_pred hccCCcHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHH
Confidence 999999999999974333222222233444444444444
No 41
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=3.6e-23 Score=223.39 Aligned_cols=205 Identities=22% Similarity=0.352 Sum_probs=163.9
Q ss_pred CccccceecCcccHH-HHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccchhh
Q 005285 167 KSMYKEVVLGGDVWD-LLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEK 245 (704)
Q Consensus 167 ~~~f~dVvG~~~~k~-~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~~~ 245 (704)
+.+|+.|+-.++.|+ .+.++.+|+++..-|.+.|.+.-||.|||||||||||+++-|+|++++..++-++.++.....
T Consensus 197 pstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~- 275 (457)
T KOG0743|consen 197 PSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDS- 275 (457)
T ss_pred CCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcH-
Confidence 389999999988875 667788999999999999999999999999999999999999999999999988766654432
Q ss_pred hhHHHHHHHHHHHhhCCCeEEEEccchhhhccCC--CC-----C-hhHHHHHHHHHHHhcCCcccCCccccccCccEEEE
Q 005285 246 SGAARINEMFSIARRNAPAFVFVDEIDAIAGRHA--RK-----D-PRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (704)
Q Consensus 246 ~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~--~~-----~-~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (704)
.++.+...+... +||+|.+||+=..-+. .. + ....-++..||+.+||..+.+|.+ -|||
T Consensus 276 ----dLr~LL~~t~~k--SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~E-------RIiv 342 (457)
T KOG0743|consen 276 ----DLRHLLLATPNK--SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDE-------RIIV 342 (457)
T ss_pred ----HHHHHHHhCCCC--cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCc-------eEEE
Confidence 277776666544 7999999998653211 11 1 123468999999999999887644 3899
Q ss_pred EEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhcc--CCCHHHHHHH
Q 005285 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTV--GFSGADIRNL 387 (704)
Q Consensus 318 aaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~--G~sgadL~~L 387 (704)
+|||.++.|||||+||||+|.+|+++..+.++-..+++.++.... +..-+.++.+... -.|+||++..
T Consensus 343 FTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 343 FTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEE 412 (457)
T ss_pred EecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHH
Confidence 999999999999999999999999999999999999999986533 1222334443333 3599998754
No 42
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.85 E-value=6.2e-21 Score=177.04 Aligned_cols=129 Identities=36% Similarity=0.662 Sum_probs=112.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccch-hhhhHHHHHHHHHHHhhCC-CeEEEEccchhhhccC-CCCCh
Q 005285 207 VLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-EKSGAARINEMFSIARRNA-PAFVFVDEIDAIAGRH-ARKDP 283 (704)
Q Consensus 207 vLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~-~~~g~~~vr~lF~~Ak~~~-P~ILfIDEiDal~~~~-~~~~~ 283 (704)
|||+||||||||++|+++|+.++.+++.++++++... .+.....++.+|.+++... ||||||||+|.+.... ...+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 6999999999999999999999999999999999865 5777889999999999988 9999999999998765 23455
Q ss_pred hHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCC
Q 005285 284 RRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGL 344 (704)
Q Consensus 284 e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~ 344 (704)
.....++.|+..++..... ..+++||+|||.++.++++++| +||++.|++|+
T Consensus 81 ~~~~~~~~L~~~l~~~~~~--------~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 81 FEQRLLNQLLSLLDNPSSK--------NSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHTTTTT--------SSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccccceeeecccccccc--------cccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 5677889999999987653 2359999999999999999998 89999999874
No 43
>CHL00181 cbbX CbbX; Provisional
Probab=99.85 E-value=1.9e-20 Score=198.40 Aligned_cols=221 Identities=18% Similarity=0.217 Sum_probs=161.3
Q ss_pred ccceecCcccHHHHHHHHHHhCCchhhhhcCCccC---ceEEEEcCCCChHHHHHHHHHHHc---C----CCEEEEeCcc
Q 005285 170 YKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFV---RGVLLSGPPGTGKTLFARTLAKES---G----LPFVFASGAE 239 (704)
Q Consensus 170 f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p---~gvLL~GPPGTGKT~LAraiA~e~---g----~~~v~is~s~ 239 (704)
+++++|.+++|+.+++++.++..+..+.+.|...+ .++||+||||||||++|+++|+.+ | .+++.+++++
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 45899999999999999999888877777887654 348999999999999999999875 2 3699999888
Q ss_pred ccch-hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEE
Q 005285 240 FTDS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFIC 318 (704)
Q Consensus 240 ~~~~-~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIa 318 (704)
+... .+..+...+.+|+.|. ++||||||+|.+...+ +.++.....++.|+..|+... .+++||+
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~-~~~~~~~e~~~~L~~~me~~~-----------~~~~vI~ 166 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPD-NERDYGSEAIEILLQVMENQR-----------DDLVVIF 166 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCC-CccchHHHHHHHHHHHHhcCC-----------CCEEEEE
Confidence 8776 4555556777777763 4799999999996432 223344567788888887532 2377888
Q ss_pred EcCCCC-----CCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCC--ccccccHHHHHH----h--ccCCC-HHHH
Q 005285 319 ATNRPD-----ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQ--LAEDVNFEELVF----R--TVGFS-GADI 384 (704)
Q Consensus 319 aTN~p~-----~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~--l~~dvdl~~La~----~--t~G~s-gadL 384 (704)
+++... .++|+|++ ||+.+|+|+.|+.+++.+|++.++.... +.++. ...+.. . .+.|. ++++
T Consensus 167 ag~~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~-~~~L~~~i~~~~~~~~~GNaR~v 243 (287)
T CHL00181 167 AGYKDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEA-EKALLDYIKKRMEQPLFANARSV 243 (287)
T ss_pred eCCcHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHhCCCCCCccHHHH
Confidence 776422 34689999 9999999999999999999999887543 33222 222222 1 24455 8999
Q ss_pred HHHHHHHHHHHHHh----CCCcccHHHH
Q 005285 385 RNLVNESGIMSVRK----GHSKIQQQDI 408 (704)
Q Consensus 385 ~~Lv~eA~~~A~r~----~~~~It~~dl 408 (704)
++++..|......+ +...++.+|+
T Consensus 244 rn~ve~~~~~~~~r~~~~~~~~~~~~~l 271 (287)
T CHL00181 244 RNALDRARMRQANRIFESGGRVLTKADL 271 (287)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 99999888765443 3334555554
No 44
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.84 E-value=3.6e-20 Score=194.03 Aligned_cols=211 Identities=17% Similarity=0.185 Sum_probs=153.2
Q ss_pred cccceecCcccHHHHHHHHHHhCCchhhhhcCCcc---CceEEEEcCCCChHHHHHHHHHHHc---C----CCEEEEeCc
Q 005285 169 MYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQF---VRGVLLSGPPGTGKTLFARTLAKES---G----LPFVFASGA 238 (704)
Q Consensus 169 ~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~---p~gvLL~GPPGTGKT~LAraiA~e~---g----~~~v~is~s 238 (704)
.+++++|.+++|+.+++++.++.......+.|... +.++||+||||||||++|+++|+.+ + .+++.++++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 36789999999999999999987766666667653 4578999999999999999999864 2 378899999
Q ss_pred cccch-hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEE
Q 005285 239 EFTDS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (704)
Q Consensus 239 ~~~~~-~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (704)
++... .+.....++.+|+.|. ++||||||+|.|.. .+..+.....++.|+..|+.... .+++|
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~--~~~~~~~~~~i~~Ll~~~e~~~~-----------~~~vi 147 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLAR--GGEKDFGKEAIDTLVKGMEDNRN-----------EFVLI 147 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhcc--CCccchHHHHHHHHHHHHhccCC-----------CEEEE
Confidence 98776 4566677888888774 57999999999963 12223345577889988876432 25666
Q ss_pred EEcCCCC-----CCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccc-cHHHHHHh---------ccCCCHH
Q 005285 318 CATNRPD-----ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDV-NFEELVFR---------TVGFSGA 382 (704)
Q Consensus 318 aaTN~p~-----~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dv-dl~~La~~---------t~G~sga 382 (704)
++++..+ .++|++++ ||+..|.|+.++.+++.+|++.++......-+. .+..++.. ...-+++
T Consensus 148 la~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R 225 (261)
T TIGR02881 148 LAGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNAR 225 (261)
T ss_pred ecCCcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHH
Confidence 6654322 36889998 999999999999999999999888754432111 12333221 1123577
Q ss_pred HHHHHHHHHHHHHHH
Q 005285 383 DIRNLVNESGIMSVR 397 (704)
Q Consensus 383 dL~~Lv~eA~~~A~r 397 (704)
.+.|++..|....+.
T Consensus 226 ~~~n~~e~a~~~~~~ 240 (261)
T TIGR02881 226 YVRNIIEKAIRRQAV 240 (261)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888877765543
No 45
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.83 E-value=7.8e-20 Score=193.73 Aligned_cols=211 Identities=17% Similarity=0.194 Sum_probs=157.6
Q ss_pred cceecCcccHHHHHHHHHHhCCchhhhhcCCcc---CceEEEEcCCCChHHHHHHHHHHHc---C----CCEEEEeCccc
Q 005285 171 KEVVLGGDVWDLLDELMIYMGNPMQYYERGVQF---VRGVLLSGPPGTGKTLFARTLAKES---G----LPFVFASGAEF 240 (704)
Q Consensus 171 ~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~---p~gvLL~GPPGTGKT~LAraiA~e~---g----~~~v~is~s~~ 240 (704)
++++|.+++|+.+.+++.++..+..+.+.|... ..++||+||||||||++|+++|..+ | .+|+++++.++
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 368999999999999999999888888888764 3489999999999999999998865 2 37999999888
Q ss_pred cch-hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEE
Q 005285 241 TDS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICA 319 (704)
Q Consensus 241 ~~~-~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaa 319 (704)
... .+.....++.+|++|. +++|||||+|.+.+.+ ...+.....++.|+..|+... .+++||++
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~-~~~~~~~~~~~~Ll~~le~~~-----------~~~~vI~a 166 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPD-NERDYGQEAIEILLQVMENQR-----------DDLVVILA 166 (284)
T ss_pred hHhhcccchHHHHHHHHHcc---CcEEEEechhhhccCC-CccchHHHHHHHHHHHHhcCC-----------CCEEEEEe
Confidence 765 3555566788888773 4799999999995432 223334556788888887532 23788888
Q ss_pred cCCC--C---CCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccc-cHHHHHHh------ccCC-CHHHHHH
Q 005285 320 TNRP--D---ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDV-NFEELVFR------TVGF-SGADIRN 386 (704)
Q Consensus 320 TN~p--~---~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dv-dl~~La~~------t~G~-sgadL~~ 386 (704)
++.. + .++|+|.+ ||+..|+||.++.+++.+|++.++.+....-+. .+..+... .+.+ ++++++|
T Consensus 167 ~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn 244 (284)
T TIGR02880 167 GYKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRN 244 (284)
T ss_pred CCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 7542 3 24899999 999999999999999999999988764322111 12333332 1222 4899999
Q ss_pred HHHHHHHHHHHh
Q 005285 387 LVNESGIMSVRK 398 (704)
Q Consensus 387 Lv~eA~~~A~r~ 398 (704)
++..|......+
T Consensus 245 ~ve~~~~~~~~r 256 (284)
T TIGR02880 245 AIDRARLRQANR 256 (284)
T ss_pred HHHHHHHHHHHH
Confidence 999888765543
No 46
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.80 E-value=1.6e-18 Score=174.29 Aligned_cols=202 Identities=21% Similarity=0.249 Sum_probs=130.5
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccch
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS 243 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~ 243 (704)
.-.+.+|+|++||+++++.++-++...+.. .....++|||||||+|||+||+.||++++.+|...++..+...
T Consensus 17 ~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r-------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~ 89 (233)
T PF05496_consen 17 RLRPKSLDEFIGQEHLKGNLKILIRAAKKR-------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKA 89 (233)
T ss_dssp HTS-SSCCCS-S-HHHHHHHHHHHHHHHCT-------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SC
T ss_pred hcCCCCHHHccCcHHHHhhhHHHHHHHHhc-------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhH
Confidence 345679999999999999988887765432 1345689999999999999999999999999999988654332
Q ss_pred hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccC----Cccc---cccCccEEE
Q 005285 244 EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERT----GIDR---FSLRQAVIF 316 (704)
Q Consensus 244 ~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~----~~~~---~~~~~~ViV 316 (704)
+ .+..++...+ ...||||||||.+.. .....|+..|+.+.-.- +... .-.-.++.+
T Consensus 90 -~----dl~~il~~l~--~~~ILFIDEIHRlnk----------~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTl 152 (233)
T PF05496_consen 90 -G----DLAAILTNLK--EGDILFIDEIHRLNK----------AQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTL 152 (233)
T ss_dssp -H----HHHHHHHT----TT-EEEECTCCC--H----------HHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EE
T ss_pred -H----HHHHHHHhcC--CCcEEEEechhhccH----------HHHHHHHHHhccCeEEEEeccccccceeeccCCCceE
Confidence 1 1233333333 346999999999842 24456777777654311 1000 011245899
Q ss_pred EEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccc-cHHHHHHhccCCCHHHHHHHHHHHH
Q 005285 317 ICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDV-NFEELVFRTVGFSGADIRNLVNESG 392 (704)
Q Consensus 317 IaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dv-dl~~La~~t~G~sgadL~~Lv~eA~ 392 (704)
|+||++...|.+.|+. ||.....+..++.++..+|++.......+.-+. ...++|.++.| +++-..+|++.+.
T Consensus 153 igATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~rvr 226 (233)
T PF05496_consen 153 IGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRRVR 226 (233)
T ss_dssp EEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHHHC
T ss_pred eeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHHH
Confidence 9999999999999999 999888999999999999999766655544222 35788888887 6776666766543
No 47
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.78 E-value=8.5e-18 Score=181.88 Aligned_cols=223 Identities=19% Similarity=0.202 Sum_probs=161.0
Q ss_pred CCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccchh
Q 005285 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE 244 (704)
Q Consensus 165 ~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~~ 244 (704)
-.+.+|++++|+++.++.+..++...+.+ ...+.++|||||||||||++|+++|++++..+..+++..+...
T Consensus 19 ~rP~~~~~~vG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~- 90 (328)
T PRK00080 19 LRPKSLDEFIGQEKVKENLKIFIEAAKKR-------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKP- 90 (328)
T ss_pred cCcCCHHHhcCcHHHHHHHHHHHHHHHhc-------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccCh-
Confidence 45679999999999999888887654333 2457789999999999999999999999999888776644321
Q ss_pred hhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCccc----CCcc--cc-ccCccEEEE
Q 005285 245 KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKER----TGID--RF-SLRQAVIFI 317 (704)
Q Consensus 245 ~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~----~~~~--~~-~~~~~ViVI 317 (704)
..+..++... ..++||||||||.+... .. +.|...|+..... .+.. .. ....++.+|
T Consensus 91 ----~~l~~~l~~l--~~~~vl~IDEi~~l~~~-------~~---e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li 154 (328)
T PRK00080 91 ----GDLAAILTNL--EEGDVLFIDEIHRLSPV-------VE---EILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLI 154 (328)
T ss_pred ----HHHHHHHHhc--ccCCEEEEecHhhcchH-------HH---HHHHHHHHhcceeeeeccCccccceeecCCCceEE
Confidence 1233334333 34689999999998421 11 2233333332110 0000 00 011347899
Q ss_pred EEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 005285 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSV 396 (704)
Q Consensus 318 aaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~ 396 (704)
++||++..++++|++ ||...+.++.|+.+++.+|++..+....+. ++..+..++..+.| +++.+.++++.+...|.
T Consensus 155 ~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G-~pR~a~~~l~~~~~~a~ 231 (328)
T PRK00080 155 GATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRG-TPRIANRLLRRVRDFAQ 231 (328)
T ss_pred eecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCC-CchHHHHHHHHHHHHHH
Confidence 999999999999988 999899999999999999999887654433 22236788888777 46888899998888887
Q ss_pred HhCCCcccHHHHHHHHHH
Q 005285 397 RKGHSKIQQQDIVDVLDK 414 (704)
Q Consensus 397 r~~~~~It~~dl~~Al~~ 414 (704)
.++...|+.+++..+++.
T Consensus 232 ~~~~~~I~~~~v~~~l~~ 249 (328)
T PRK00080 232 VKGDGVITKEIADKALDM 249 (328)
T ss_pred HcCCCCCCHHHHHHHHHH
Confidence 777778999999988865
No 48
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.76 E-value=1.9e-17 Score=176.88 Aligned_cols=219 Identities=18% Similarity=0.217 Sum_probs=155.2
Q ss_pred cccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccchhhhhH
Q 005285 169 MYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGA 248 (704)
Q Consensus 169 ~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~~~~g~ 248 (704)
+|+|++|++++++.|..++...+.. ...+.+++|+||||||||++|+++|++++.++..+++......
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~----- 69 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR-------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKP----- 69 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCc-----
Confidence 6999999999998888877543332 2356789999999999999999999999998877765533221
Q ss_pred HHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCccc----CCcc---ccccCccEEEEEEcC
Q 005285 249 ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKER----TGID---RFSLRQAVIFICATN 321 (704)
Q Consensus 249 ~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~----~~~~---~~~~~~~ViVIaaTN 321 (704)
..+...+... ..+.||||||+|.+... ..+.|+..|+..... .+.. ......++++|++||
T Consensus 70 ~~l~~~l~~~--~~~~vl~iDEi~~l~~~----------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~ 137 (305)
T TIGR00635 70 GDLAAILTNL--EEGDVLFIDEIHRLSPA----------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATT 137 (305)
T ss_pred hhHHHHHHhc--ccCCEEEEehHhhhCHH----------HHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecC
Confidence 1122222222 34679999999998531 123344444332211 0000 001123478999999
Q ss_pred CCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCC
Q 005285 322 RPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGH 400 (704)
Q Consensus 322 ~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r~~~ 400 (704)
++..+++++++ ||...+.+++|+.+++.++++..+...... ++..+..+++.+.|. ++.+.++++.+...|...+.
T Consensus 138 ~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~-pR~~~~ll~~~~~~a~~~~~ 214 (305)
T TIGR00635 138 RAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGT-PRIANRLLRRVRDFAQVRGQ 214 (305)
T ss_pred CccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCC-cchHHHHHHHHHHHHHHcCC
Confidence 99999999998 998899999999999999999877643332 223467888887774 57788899988777766666
Q ss_pred CcccHHHHHHHHHH
Q 005285 401 SKIQQQDIVDVLDK 414 (704)
Q Consensus 401 ~~It~~dl~~Al~~ 414 (704)
..|+.+++..+++.
T Consensus 215 ~~it~~~v~~~l~~ 228 (305)
T TIGR00635 215 KIINRDIALKALEM 228 (305)
T ss_pred CCcCHHHHHHHHHH
Confidence 77999999888876
No 49
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.76 E-value=1.5e-17 Score=190.31 Aligned_cols=226 Identities=19% Similarity=0.222 Sum_probs=151.0
Q ss_pred cccCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc----------CCC
Q 005285 162 YVSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES----------GLP 231 (704)
Q Consensus 162 ~~~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~----------g~~ 231 (704)
.++..+.+|++++|++...+.++.. +.. +.+.++||+||||||||++|+++..++ +.+
T Consensus 56 ~~~~rp~~f~~iiGqs~~i~~l~~a---l~~---------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~ 123 (531)
T TIGR02902 56 SEKTRPKSFDEIIGQEEGIKALKAA---LCG---------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAA 123 (531)
T ss_pred HHhhCcCCHHHeeCcHHHHHHHHHH---HhC---------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCC
Confidence 3567789999999999777666543 211 246789999999999999999997642 468
Q ss_pred EEEEeCccc--cch-h-----hh---hHHHHHHHHH----------HHhhCCCeEEEEccchhhhccCCCCChhHHHHHH
Q 005285 232 FVFASGAEF--TDS-E-----KS---GAARINEMFS----------IARRNAPAFVFVDEIDAIAGRHARKDPRRRATFE 290 (704)
Q Consensus 232 ~v~is~s~~--~~~-~-----~~---g~~~vr~lF~----------~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln 290 (704)
|+.++|... .+. . +. ....-...|. ........+|||||+|.+.. ..++
T Consensus 124 fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~----------~~q~ 193 (531)
T TIGR02902 124 FVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHP----------VQMN 193 (531)
T ss_pred EEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCH----------HHHH
Confidence 999998642 111 0 00 0000000000 01122347999999999842 2456
Q ss_pred HHHHHhcCCcccC------Ccc---------c--cccCccEEE-EEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHH
Q 005285 291 ALIAQLDGDKERT------GID---------R--FSLRQAVIF-ICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQ 352 (704)
Q Consensus 291 ~LL~~ld~~~~~~------~~~---------~--~~~~~~ViV-IaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~ 352 (704)
.|+..|+...... +.+ . ......+.+ ++|||.|+.+++++++ ||. .|.+++++.+++.+
T Consensus 194 ~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~eei~~ 270 (531)
T TIGR02902 194 KLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEEIKE 270 (531)
T ss_pred HHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHHHHH
Confidence 7776665421100 000 0 001123444 4566789999999999 984 78899999999999
Q ss_pred HHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Q 005285 353 IFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414 (704)
Q Consensus 353 Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al~~ 414 (704)
|++..+++..+. ++..++.++..+. +++++.|+++.|+..|..+++..|+.+|+.+++..
T Consensus 271 Il~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~ 331 (531)
T TIGR02902 271 IAKNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAEN 331 (531)
T ss_pred HHHHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCC
Confidence 999988765433 2223556666543 79999999999999998888889999999998763
No 50
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=2.8e-17 Score=187.34 Aligned_cols=216 Identities=39% Similarity=0.615 Sum_probs=190.2
Q ss_pred hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccch-hhhhHHHHHHHHHHHhhCCCeEEEE
Q 005285 190 MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-EKSGAARINEMFSIARRNAPAFVFV 268 (704)
Q Consensus 190 l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~-~~~g~~~vr~lF~~Ak~~~P~ILfI 268 (704)
+..+..+...+..+|++++++||||||||++++++|.+ +..++.+++.+.... .+......+.+|..++..+|+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~ 82 (494)
T COG0464 4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI 82 (494)
T ss_pred ccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEee
Confidence 34567788889999999999999999999999999999 776688888888877 5778889999999999999999999
Q ss_pred ccchhhhccCCC-CChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCH
Q 005285 269 DEIDAIAGRHAR-KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDA 347 (704)
Q Consensus 269 DEiDal~~~~~~-~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~ 347 (704)
||+|.+.+++.. ..........+++..|++.. . .. +++++.||++..+|+++++||||++.+.+..|+.
T Consensus 83 d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~-~--------~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (494)
T COG0464 83 DEIDALAPKRSSDQGEVERRVVAQLLALMDGLK-R--------GQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDE 152 (494)
T ss_pred chhhhcccCccccccchhhHHHHHHHHhccccc-C--------Cc-eEEEeecCCccccChhHhCccccceeeecCCCCH
Confidence 999999887654 33345678899999999876 1 23 8899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC------CCcccHHHHHHHHHHHH
Q 005285 348 KQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKG------HSKIQQQDIVDVLDKQL 416 (704)
Q Consensus 348 ~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r~~------~~~It~~dl~~Al~~~~ 416 (704)
..+.+|+..+........+.++..++..+.|++++++..++.++...+.++. ...++.+++.++++++.
T Consensus 153 ~~~~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~ 227 (494)
T COG0464 153 AGRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVL 227 (494)
T ss_pred HHHHHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcC
Confidence 9999999999988888888999999999999999999999999999998885 23478899999998864
No 51
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=3.4e-17 Score=183.20 Aligned_cols=209 Identities=18% Similarity=0.211 Sum_probs=162.7
Q ss_pred CccCceEEEEcCCCChHHHHHHHHHHHcC----CCEEEEeCccccch-hhhhHHHHHHHHHHHhhCCCeEEEEccchhhh
Q 005285 201 VQFVRGVLLSGPPGTGKTLFARTLAKESG----LPFVFASGAEFTDS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIA 275 (704)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAraiA~e~g----~~~v~is~s~~~~~-~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~ 275 (704)
+..+.+|||+||+|+|||.|+++++.++. +++..++|+.+... .....+.++.+|..+.+++|+||++|++|.|+
T Consensus 428 v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~ 507 (952)
T KOG0735|consen 428 VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLA 507 (952)
T ss_pred ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhh
Confidence 44567899999999999999999999874 45678999998776 44555668999999999999999999999998
Q ss_pred ccCC---CCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHH
Q 005285 276 GRHA---RKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQ 352 (704)
Q Consensus 276 ~~~~---~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~ 352 (704)
+... +.+....+.++.+++++-.... ..+..+.|||+.+....|++-|.+|++|+.++.++.|+..+|.+
T Consensus 508 ~~s~~e~~q~~~~~~rla~flnqvi~~y~-------~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~ 580 (952)
T KOG0735|consen 508 SASSNENGQDGVVSERLAAFLNQVIKIYL-------KRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKE 580 (952)
T ss_pred ccCcccCCcchHHHHHHHHHHHHHHHHHH-------ccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHH
Confidence 7322 2233344455555544322111 11234799999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHh----CCCcccHHHHHHHHHHHH
Q 005285 353 IFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSVRK----GHSKIQQQDIVDVLDKQL 416 (704)
Q Consensus 353 Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r~----~~~~It~~dl~~Al~~~~ 416 (704)
||+..+.+.... ..-|++-++..|+||...|+..++.+|...|... +...+|.+++.+++..-.
T Consensus 581 IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~klltke~f~ksL~~F~ 649 (952)
T KOG0735|consen 581 ILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLLTKELFEKSLKDFV 649 (952)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHhcC
Confidence 999888765522 1123445999999999999999999999888732 334789999999988643
No 52
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.1e-17 Score=173.27 Aligned_cols=229 Identities=22% Similarity=0.343 Sum_probs=162.6
Q ss_pred ccceecCcccHHHHHHHHHHhCCchhhhhcC-----CccCceEEEEcCCCChHHHHHHHHHHHcC---------CCEEEE
Q 005285 170 YKEVVLGGDVWDLLDELMIYMGNPMQYYERG-----VQFVRGVLLSGPPGTGKTLFARTLAKESG---------LPFVFA 235 (704)
Q Consensus 170 f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g-----~~~p~gvLL~GPPGTGKT~LAraiA~e~g---------~~~v~i 235 (704)
|+.++-...+|+.|...+. ....|.+.+ +...|-+|||||||||||+|+||+|+.+. ..++.+
T Consensus 141 WEsLiyds~lK~~ll~Ya~---s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEi 217 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAA---SALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEI 217 (423)
T ss_pred HHHHhhcccHHHHHHHHHH---HHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEE
Confidence 4555555667766555443 233444443 34568899999999999999999999874 357899
Q ss_pred eCccccch-hhhhHHHHHHHHHHHhhC---CC--eEEEEccchhhhccC-----CCCChhHHHHHHHHHHHhcCCcccCC
Q 005285 236 SGAEFTDS-EKSGAARINEMFSIARRN---AP--AFVFVDEIDAIAGRH-----ARKDPRRRATFEALIAQLDGDKERTG 304 (704)
Q Consensus 236 s~s~~~~~-~~~g~~~vr~lF~~Ak~~---~P--~ILfIDEiDal~~~~-----~~~~~e~~~~ln~LL~~ld~~~~~~~ 304 (704)
++..+.++ ++...+.+..+|++..+. .. ..++|||+++|+..| ++.....-+.+|.+|.+||......
T Consensus 218 nshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~- 296 (423)
T KOG0744|consen 218 NSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYP- 296 (423)
T ss_pred ehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCC-
Confidence 99998888 466777788888876542 22 356789999998544 1233345679999999999977654
Q ss_pred ccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCC-----C--------cccccc---
Q 005285 305 IDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGK-----Q--------LAEDVN--- 368 (704)
Q Consensus 305 ~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~-----~--------l~~dvd--- 368 (704)
+|++++|+|-.+.||.|+.. |-|-+.++++|+...|.+|++.++... - ....+.
T Consensus 297 --------NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~ 366 (423)
T KOG0744|consen 297 --------NVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQK 366 (423)
T ss_pred --------CEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhH
Confidence 48999999999999999999 999999999999999999999775321 0 111111
Q ss_pred --HHHHHHh-ccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Q 005285 369 --FEELVFR-TVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414 (704)
Q Consensus 369 --l~~La~~-t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al~~ 414 (704)
...++.. +.|.||+.|+.|=--|...-. ....|+.+++..|+-.
T Consensus 367 ~~~~~~~~~~~~gLSGRtlrkLP~Laha~y~--~~~~v~~~~fl~al~e 413 (423)
T KOG0744|consen 367 ALRNILIELSTVGLSGRTLRKLPLLAHAEYF--RTFTVDLSNFLLALLE 413 (423)
T ss_pred hHHHHHHHHhhcCCccchHhhhhHHHHHhcc--CCCccChHHHHHHHHH
Confidence 1222322 689999999988554432221 2246888888777654
No 53
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.74 E-value=7.4e-17 Score=165.10 Aligned_cols=225 Identities=19% Similarity=0.179 Sum_probs=169.7
Q ss_pred CCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccchh
Q 005285 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE 244 (704)
Q Consensus 165 ~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~~ 244 (704)
-.+.+|+|.+|++.+|+.|+-++..-+.. .....++|||||||.|||+||+-+|+|+|+.+-..++..+....
T Consensus 20 lRP~~l~efiGQ~~vk~~L~ifI~AAk~r-------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~g 92 (332)
T COG2255 20 LRPKTLDEFIGQEKVKEQLQIFIKAAKKR-------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPG 92 (332)
T ss_pred cCcccHHHhcChHHHHHHHHHHHHHHHhc-------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChh
Confidence 34678999999999999999888775544 34678999999999999999999999999999988887765532
Q ss_pred hhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccc-------cccCccEEEE
Q 005285 245 KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDR-------FSLRQAVIFI 317 (704)
Q Consensus 245 ~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~-------~~~~~~ViVI 317 (704)
. +-.++..... ..||||||||.+.+. +-.-|...|+.|.-.--+.. .-.-.++.+|
T Consensus 93 D-----laaiLt~Le~--~DVLFIDEIHrl~~~----------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLI 155 (332)
T COG2255 93 D-----LAAILTNLEE--GDVLFIDEIHRLSPA----------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLI 155 (332)
T ss_pred h-----HHHHHhcCCc--CCeEEEehhhhcChh----------HHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEe
Confidence 1 2333333333 379999999999532 22234445555432211000 1112468999
Q ss_pred EEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcccc-ccHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 005285 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAED-VNFEELVFRTVGFSGADIRNLVNESGIMSV 396 (704)
Q Consensus 318 aaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~d-vdl~~La~~t~G~sgadL~~Lv~eA~~~A~ 396 (704)
+||.+...|...|+. ||.....+..++.++..+|+........+.-+ ....++|+++.| |++--..|+++..-.|.
T Consensus 156 GATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRVRDfa~ 232 (332)
T COG2255 156 GATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRVRDFAQ 232 (332)
T ss_pred eeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHHHHHHH
Confidence 999999999999998 99999999999999999999987655444322 235788988887 67777788999999998
Q ss_pred HhCCCcccHHHHHHHHHHHH
Q 005285 397 RKGHSKIQQQDIVDVLDKQL 416 (704)
Q Consensus 397 r~~~~~It~~dl~~Al~~~~ 416 (704)
-++...|+.+-..+|+....
T Consensus 233 V~~~~~I~~~ia~~aL~~L~ 252 (332)
T COG2255 233 VKGDGDIDRDIADKALKMLD 252 (332)
T ss_pred HhcCCcccHHHHHHHHHHhC
Confidence 88999999988888887643
No 54
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.73 E-value=9.8e-17 Score=190.55 Aligned_cols=222 Identities=19% Similarity=0.242 Sum_probs=156.3
Q ss_pred CCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc----------CCCEEEE
Q 005285 166 TKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES----------GLPFVFA 235 (704)
Q Consensus 166 ~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~----------g~~~v~i 235 (704)
.+-.+++++|.++.. ..++..|... ...++||+||||||||++|+++|..+ +..++.+
T Consensus 177 r~~~l~~~igr~~ei---~~~~~~L~~~---------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~ 244 (731)
T TIGR02639 177 KNGKIDPLIGREDEL---ERTIQVLCRR---------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL 244 (731)
T ss_pred hcCCCCcccCcHHHH---HHHHHHHhcC---------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe
Confidence 456789999988543 3444444333 34689999999999999999999987 6778999
Q ss_pred eCccccc--h-hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCc
Q 005285 236 SGAEFTD--S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQ 312 (704)
Q Consensus 236 s~s~~~~--~-~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~ 312 (704)
+++.+.. . .+....+++.+|+.++...|+||||||+|.|.+.+...+.. ....+.|...|.. .
T Consensus 245 ~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~-~~~~~~L~~~l~~-------------g 310 (731)
T TIGR02639 245 DMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGS-MDASNLLKPALSS-------------G 310 (731)
T ss_pred cHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCcc-HHHHHHHHHHHhC-------------C
Confidence 9888764 2 35677899999999988889999999999997653221111 1122344444432 2
Q ss_pred cEEEEEEcCCCC-----CCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCC----Cc-cccccHHHHHHhccCCC--
Q 005285 313 AVIFICATNRPD-----ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGK----QL-AEDVNFEELVFRTVGFS-- 380 (704)
Q Consensus 313 ~ViVIaaTN~p~-----~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~----~l-~~dvdl~~La~~t~G~s-- 380 (704)
.+.+|++||..+ .+|+|+.| ||. .|.|+.|+.+++.+||+...... .+ -.+..+..++..+..|-
T Consensus 311 ~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~ 387 (731)
T TIGR02639 311 KLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYIND 387 (731)
T ss_pred CeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhccccc
Confidence 388999998633 57999999 996 79999999999999999655431 11 13334666777666554
Q ss_pred ---HHHHHHHHHHHHHHHHHh----CCCcccHHHHHHHHHHHH
Q 005285 381 ---GADIRNLVNESGIMSVRK----GHSKIQQQDIVDVLDKQL 416 (704)
Q Consensus 381 ---gadL~~Lv~eA~~~A~r~----~~~~It~~dl~~Al~~~~ 416 (704)
+.---.++++|+.....+ ....|+.+|+.+++.+..
T Consensus 388 r~~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~t 430 (731)
T TIGR02639 388 RFLPDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMA 430 (731)
T ss_pred ccCCHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHh
Confidence 333346677776543322 134599999999998753
No 55
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.73 E-value=1.4e-16 Score=190.13 Aligned_cols=171 Identities=24% Similarity=0.248 Sum_probs=122.7
Q ss_pred ceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccch--------
Q 005285 172 EVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-------- 243 (704)
Q Consensus 172 dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~-------- 243 (704)
++.|++++|+.+.+.+...+.. +......+||+||||||||++|+++|+.++.+|+.++++.+...
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~ 394 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRR 394 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCC
Confidence 4778888888888766543211 11223479999999999999999999999999999987654321
Q ss_pred --hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcc----ccccCccEEEE
Q 005285 244 --EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGID----RFSLRQAVIFI 317 (704)
Q Consensus 244 --~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~----~~~~~~~ViVI 317 (704)
.+.....+...|..+....| ||||||||.+.+.. .++ ..+.|+..||......-.+ ......++++|
T Consensus 395 ~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~-~~~-----~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I 467 (775)
T TIGR00763 395 TYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSF-RGD-----PASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFI 467 (775)
T ss_pred ceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCcc-CCC-----HHHHHHHhcCHHhcCccccccCCceeccCCEEEE
Confidence 12223456677888876666 78999999997432 111 2466777776422111001 01122468999
Q ss_pred EEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHh
Q 005285 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHS 358 (704)
Q Consensus 318 aaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l 358 (704)
+|||.++.++++|++ ||+ .|+|+.|+.+++.+|++.++
T Consensus 468 ~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 468 ATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHH
Confidence 999999999999999 995 79999999999999998876
No 56
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.72 E-value=8.5e-17 Score=171.69 Aligned_cols=203 Identities=24% Similarity=0.339 Sum_probs=141.4
Q ss_pred cCCCccccceecCcccH---HHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccc
Q 005285 164 SDTKSMYKEVVLGGDVW---DLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF 240 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k---~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~ 240 (704)
.-.+.+|+|++||+... ..|...++. ....+++||||||||||++|+.||+..+.+|..+|+-.
T Consensus 17 rmRP~~lde~vGQ~HLlg~~~~lrr~v~~------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~- 83 (436)
T COG2256 17 RLRPKSLDEVVGQEHLLGEGKPLRRAVEA------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT- 83 (436)
T ss_pred HhCCCCHHHhcChHhhhCCCchHHHHHhc------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc-
Confidence 34568999999998653 334444332 23458999999999999999999999999999887544
Q ss_pred cchhhhhHHHHHHHHHHHhhCC----CeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEE
Q 005285 241 TDSEKSGAARINEMFSIARRNA----PAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (704)
Q Consensus 241 ~~~~~~g~~~vr~lF~~Ak~~~----P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (704)
.+.+.+|.+|+.|++.. ..||||||||.+-. .....||-.|+.. .|++
T Consensus 84 -----~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK----------~QQD~lLp~vE~G-------------~iil 135 (436)
T COG2256 84 -----SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNK----------AQQDALLPHVENG-------------TIIL 135 (436)
T ss_pred -----ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcCh----------hhhhhhhhhhcCC-------------eEEE
Confidence 45567999999996533 48999999999842 2345677777642 2788
Q ss_pred EEEc--CCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhc--CCCcc------ccccHHHHHHhccCCCHHHHHH
Q 005285 317 ICAT--NRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA--GKQLA------EDVNFEELVFRTVGFSGADIRN 386 (704)
Q Consensus 317 IaaT--N~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~--~~~l~------~dvdl~~La~~t~G~sgadL~~ 386 (704)
|+|| |..-.|.+||++ |. +++.+.+.+.++..++++.-+. ...+. ++.-+..++..+.| |.+.
T Consensus 136 IGATTENPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G----D~R~ 208 (436)
T COG2256 136 IGATTENPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG----DARR 208 (436)
T ss_pred EeccCCCCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc----hHHH
Confidence 8876 555689999999 88 6889999999999999987332 22222 22235566666655 6666
Q ss_pred HHHHHHHHHH--HhCCCcccHHHHHHHHHHH
Q 005285 387 LVNESGIMSV--RKGHSKIQQQDIVDVLDKQ 415 (704)
Q Consensus 387 Lv~eA~~~A~--r~~~~~It~~dl~~Al~~~ 415 (704)
++|..-+.+. +.+. .++.+++.+.+.+.
T Consensus 209 aLN~LE~~~~~~~~~~-~~~~~~l~~~l~~~ 238 (436)
T COG2256 209 ALNLLELAALSAEPDE-VLILELLEEILQRR 238 (436)
T ss_pred HHHHHHHHHHhcCCCc-ccCHHHHHHHHhhh
Confidence 6554333222 2222 34477777777654
No 57
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.69 E-value=2.6e-16 Score=185.47 Aligned_cols=221 Identities=18% Similarity=0.208 Sum_probs=148.5
Q ss_pred CccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---C-------CCEEEEe
Q 005285 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---G-------LPFVFAS 236 (704)
Q Consensus 167 ~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g-------~~~v~is 236 (704)
.-.++.++|.++ +++.++..|... .+.++||+||||||||++|+++|... + ..++.++
T Consensus 182 ~g~~~~liGR~~---ei~~~i~iL~r~---------~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~ 249 (758)
T PRK11034 182 VGGIDPLIGREK---ELERAIQVLCRR---------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_pred cCCCCcCcCCCH---HHHHHHHHHhcc---------CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc
Confidence 345778888874 444444444332 34578999999999999999999764 3 3445555
Q ss_pred Cccccc--h-hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCcc
Q 005285 237 GAEFTD--S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQA 313 (704)
Q Consensus 237 ~s~~~~--~-~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ 313 (704)
...+.. . .+....+++.+|..+++..++||||||||.|.+.+...... ....|.|...+.. ..
T Consensus 250 ~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~-~d~~nlLkp~L~~-------------g~ 315 (758)
T PRK11034 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQ-VDAANLIKPLLSS-------------GK 315 (758)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcH-HHHHHHHHHHHhC-------------CC
Confidence 444442 1 34567788999999988889999999999998654321111 1122222222221 23
Q ss_pred EEEEEEcCCCC-----CCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccccH-----HHHHHh-----ccC
Q 005285 314 VIFICATNRPD-----ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNF-----EELVFR-----TVG 378 (704)
Q Consensus 314 ViVIaaTN~p~-----~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl-----~~La~~-----t~G 378 (704)
+.||+|||.++ ..|++|.| ||+ .|.|+.|+.+++.+||+.+........++++ ...+.. +..
T Consensus 316 i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r 392 (758)
T PRK11034 316 IRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDR 392 (758)
T ss_pred eEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCc
Confidence 89999999865 57999999 996 7999999999999999977654443333332 222322 234
Q ss_pred CCHHHHHHHHHHHHHHHH----HhCCCcccHHHHHHHHHHHH
Q 005285 379 FSGADIRNLVNESGIMSV----RKGHSKIQQQDIVDVLDKQL 416 (704)
Q Consensus 379 ~sgadL~~Lv~eA~~~A~----r~~~~~It~~dl~~Al~~~~ 416 (704)
+-+...-.++.+|+.... ......|+.+|+.+.+.+..
T Consensus 393 ~lPdKaidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~t 434 (758)
T PRK11034 393 HLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIA 434 (758)
T ss_pred cChHHHHHHHHHHHHhhccCcccccccccChhhHHHHHHHHh
Confidence 456678889999885442 22344688899988887753
No 58
>PRK04195 replication factor C large subunit; Provisional
Probab=99.68 E-value=7.9e-16 Score=174.83 Aligned_cols=209 Identities=21% Similarity=0.298 Sum_probs=148.4
Q ss_pred ccCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccc
Q 005285 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (704)
Q Consensus 163 ~~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~ 242 (704)
++..+.+|+||+|++++++.|..++....+. .+++++|||||||||||++|+++|++++.+++.+++++...
T Consensus 6 eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g--------~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~ 77 (482)
T PRK04195 6 EKYRPKTLSDVVGNEKAKEQLREWIESWLKG--------KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT 77 (482)
T ss_pred hhcCCCCHHHhcCCHHHHHHHHHHHHHHhcC--------CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc
Confidence 3567789999999999988888877543321 34789999999999999999999999999999999987653
Q ss_pred hhhhhHHHHHHHHHHHhh------CCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEE
Q 005285 243 SEKSGAARINEMFSIARR------NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (704)
Q Consensus 243 ~~~~g~~~vr~lF~~Ak~------~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (704)
.. .++.+...+.. ..+.||+|||+|.+.++. ....++.|+..++... ..+
T Consensus 78 ~~-----~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~------d~~~~~aL~~~l~~~~-------------~~i 133 (482)
T PRK04195 78 AD-----VIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE------DRGGARAILELIKKAK-------------QPI 133 (482)
T ss_pred HH-----HHHHHHHHhhccCcccCCCCeEEEEecCccccccc------chhHHHHHHHHHHcCC-------------CCE
Confidence 21 12222222211 246899999999985421 1224566666665311 356
Q ss_pred EEEcCCCCCCcc-cccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHH
Q 005285 317 ICATNRPDELDL-EFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIM 394 (704)
Q Consensus 317 IaaTN~p~~LD~-aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~Lv~eA~~~ 394 (704)
|++||.+..+++ .+++ |+ ..|.|+.|+..++..+++..+....+. ++..+..|+..+.| |++.+++.....
T Consensus 134 Ili~n~~~~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain~Lq~~ 206 (482)
T PRK04195 134 ILTANDPYDPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAINDLQAI 206 (482)
T ss_pred EEeccCccccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHH
Confidence 677888888877 5554 55 689999999999999999887654432 23347778877544 888888877664
Q ss_pred HHHhCCCcccHHHHHHHH
Q 005285 395 SVRKGHSKIQQQDIVDVL 412 (704)
Q Consensus 395 A~r~~~~~It~~dl~~Al 412 (704)
+ .+...|+.+++....
T Consensus 207 a--~~~~~it~~~v~~~~ 222 (482)
T PRK04195 207 A--EGYGKLTLEDVKTLG 222 (482)
T ss_pred h--cCCCCCcHHHHHHhh
Confidence 3 455678888876554
No 59
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=1.4e-15 Score=171.38 Aligned_cols=205 Identities=18% Similarity=0.255 Sum_probs=142.2
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCC-------------
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGL------------- 230 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~------------- 230 (704)
+.++.+|+||+|++++++.|+..+. +. +.|.++||+||||||||++|+++|+.++.
T Consensus 7 kyRP~~~~divGq~~i~~~L~~~i~---~~--------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~ 75 (472)
T PRK14962 7 KYRPKTFSEVVGQDHVKKLIINALK---KN--------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECR 75 (472)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHH---cC--------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccH
Confidence 4567899999999988777665433 33 36778999999999999999999998764
Q ss_pred -----------CEEEEeCccccchhhhhHHHHHHHHHHHhh----CCCeEEEEccchhhhccCCCCChhHHHHHHHHHHH
Q 005285 231 -----------PFVFASGAEFTDSEKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQ 295 (704)
Q Consensus 231 -----------~~v~is~s~~~~~~~~g~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ 295 (704)
.++.++++. ..+...+|.+.+.+.. ....||||||+|.+.. ..++.|+..
T Consensus 76 ~c~~i~~g~~~dv~el~aa~-----~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~----------~a~~~LLk~ 140 (472)
T PRK14962 76 ACRSIDEGTFMDVIELDAAS-----NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK----------EAFNALLKT 140 (472)
T ss_pred HHHHHhcCCCCccEEEeCcc-----cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH----------HHHHHHHHH
Confidence 244444321 1223445665555442 2346999999999842 246788888
Q ss_pred hcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHH
Q 005285 296 LDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVF 374 (704)
Q Consensus 296 ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~ 374 (704)
++.... .+++|++|+.+..+++++++ |+ ..+.|.+++.++...+++..+....+. ++..+..|+.
T Consensus 141 LE~p~~-----------~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~ 206 (472)
T PRK14962 141 LEEPPS-----------HVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAK 206 (472)
T ss_pred HHhCCC-----------cEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 876332 36777777778899999998 88 589999999999999998876543322 2334677887
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHH
Q 005285 375 RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLD 413 (704)
Q Consensus 375 ~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al~ 413 (704)
.+.| ..+++-+.+..+... .+ ..|+.+++.+++.
T Consensus 207 ~s~G-dlR~aln~Le~l~~~---~~-~~It~e~V~~~l~ 240 (472)
T PRK14962 207 RASG-GLRDALTMLEQVWKF---SE-GKITLETVHEALG 240 (472)
T ss_pred HhCC-CHHHHHHHHHHHHHh---cC-CCCCHHHHHHHHc
Confidence 7654 444455555443322 22 3499999887764
No 60
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=2.1e-15 Score=167.96 Aligned_cols=210 Identities=16% Similarity=0.217 Sum_probs=146.3
Q ss_pred ccCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCE-------EEE
Q 005285 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPF-------VFA 235 (704)
Q Consensus 163 ~~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~-------v~i 235 (704)
.+..+.+|+||+|++.+...|+..+. +. +.+..+||+||||||||++|+.+|+.++..- ..+
T Consensus 10 ~KyRP~~f~dvVGQe~iv~~L~~~i~---~~--------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C 78 (484)
T PRK14956 10 RKYRPQFFRDVIHQDLAIGALQNALK---SG--------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC 78 (484)
T ss_pred HHhCCCCHHHHhChHHHHHHHHHHHH---cC--------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC
Confidence 35678899999999988877665544 22 3567799999999999999999999887531 000
Q ss_pred ---------eCccccch---hhhhHHHHHHHHHHHh----hCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCC
Q 005285 236 ---------SGAEFTDS---EKSGAARINEMFSIAR----RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGD 299 (704)
Q Consensus 236 ---------s~s~~~~~---~~~g~~~vr~lF~~Ak----~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~ 299 (704)
...++.+. ...+...+|.+.+.+. .....|+||||+|.+. ...+|.||..|+..
T Consensus 79 ~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls----------~~A~NALLKtLEEP 148 (484)
T PRK14956 79 TSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT----------DQSFNALLKTLEEP 148 (484)
T ss_pred cHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC----------HHHHHHHHHHhhcC
Confidence 00111111 1123444566555443 2345799999999994 23688999998763
Q ss_pred cccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccC
Q 005285 300 KERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVG 378 (704)
Q Consensus 300 ~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G 378 (704)
. ..+++|++|+.++.|.+++++ |+ .++.|..++.++..+.++..+....+. ++..+..|++.+.|
T Consensus 149 p-----------~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G 214 (484)
T PRK14956 149 P-----------AHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG 214 (484)
T ss_pred C-----------CceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 3 247899999999999999999 98 568999999998888888877654432 33356778877666
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 005285 379 FSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (704)
Q Consensus 379 ~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al 412 (704)
+.+|.-+++..+...+ ...|+.+++.+.+
T Consensus 215 -d~RdAL~lLeq~i~~~----~~~it~~~V~~~l 243 (484)
T PRK14956 215 -SVRDMLSFMEQAIVFT----DSKLTGVKIRKMI 243 (484)
T ss_pred -hHHHHHHHHHHHHHhC----CCCcCHHHHHHHh
Confidence 5777777777655332 2358888775544
No 61
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.66 E-value=6.4e-15 Score=161.25 Aligned_cols=220 Identities=17% Similarity=0.198 Sum_probs=144.1
Q ss_pred ccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcC---------CCEEEEeCccc
Q 005285 170 YKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESG---------LPFVFASGAEF 240 (704)
Q Consensus 170 f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g---------~~~v~is~s~~ 240 (704)
.++++|.++..+.|...+..... ...+.+++|+||||||||++++++++++. +++++++|...
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~--------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILR--------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 35778888655555544432111 13467899999999999999999987642 57889998765
Q ss_pred cchhhh---------------------hHHHHHHHHHHHh-hCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcC
Q 005285 241 TDSEKS---------------------GAARINEMFSIAR-RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDG 298 (704)
Q Consensus 241 ~~~~~~---------------------g~~~vr~lF~~Ak-~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~ 298 (704)
...... ....++.++.... ...+.||+|||+|.+.+. . ...+..|+...+.
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~----~---~~~L~~l~~~~~~ 158 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD----D---DDLLYQLSRARSN 158 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC----C---cHHHHhHhccccc
Confidence 431100 0112344455443 345789999999999622 1 1244455443211
Q ss_pred CcccCCccccccCccEEEEEEcCCCC---CCcccccCCCccc-eeeeeCCCCHHHHHHHHHHHhcC----CCccccc-c-
Q 005285 299 DKERTGIDRFSLRQAVIFICATNRPD---ELDLEFVRPGRID-RRLYIGLPDAKQRVQIFDVHSAG----KQLAEDV-N- 368 (704)
Q Consensus 299 ~~~~~~~~~~~~~~~ViVIaaTN~p~---~LD~aLlRpgRfd-~~I~v~~Pd~~eR~~Il~~~l~~----~~l~~dv-d- 368 (704)
.. ....++.+|+++|.++ .+++.+.+ ||. ..+.|++++.++..+|++.++.. ..+.+++ +
T Consensus 159 ~~--------~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~ 228 (365)
T TIGR02928 159 GD--------LDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPL 228 (365)
T ss_pred cC--------CCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHH
Confidence 11 0113488999999876 57778877 774 67999999999999999988752 1122221 1
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Q 005285 369 FEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQ 415 (704)
Q Consensus 369 l~~La~~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al~~~ 415 (704)
+..++..+.|. .+.+-++|+.|+..|..++...|+.+|+..|++..
T Consensus 229 i~~~~~~~~Gd-~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 229 CAALAAQEHGD-ARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI 274 (365)
T ss_pred HHHHHHHhcCC-HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 22344444553 45566788899999988888899999999998875
No 62
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=1.7e-15 Score=172.36 Aligned_cols=207 Identities=17% Similarity=0.248 Sum_probs=145.2
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC------------
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP------------ 231 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~------------ 231 (704)
+..+.+|+||+|++.+++.|+..+.. . +.+..+||+||+|||||++|+.+|+.+++.
T Consensus 9 KYRPqtFddVIGQe~vv~~L~~al~~---g--------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~P 77 (700)
T PRK12323 9 KWRPRDFTTLVGQEHVVRALTHALEQ---Q--------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQP 77 (700)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHHh---C--------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCC
Confidence 56778999999999988877766542 2 456789999999999999999999988751
Q ss_pred EEEE-eC--------ccccch---hhhhHHHHHHHHHHHh----hCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHH
Q 005285 232 FVFA-SG--------AEFTDS---EKSGAARINEMFSIAR----RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQ 295 (704)
Q Consensus 232 ~v~i-s~--------s~~~~~---~~~g~~~vr~lF~~Ak----~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ 295 (704)
+-.+ +| .++.+. ...+...+|++.+.+. .....|+||||+|.|. ....|.||+.
T Consensus 78 CG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls----------~~AaNALLKT 147 (700)
T PRK12323 78 CGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT----------NHAFNAMLKT 147 (700)
T ss_pred CcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC----------HHHHHHHHHh
Confidence 1000 00 112211 1123345666655543 2335799999999994 2367899999
Q ss_pred hcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcccc-ccHHHHHH
Q 005285 296 LDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAED-VNFEELVF 374 (704)
Q Consensus 296 ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~d-vdl~~La~ 374 (704)
|+.-.. ++++|++||.++.|.+.+++ || .++.|..++.++..+.++..+....+..+ ..+..|++
T Consensus 148 LEEPP~-----------~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~ 213 (700)
T PRK12323 148 LEEPPE-----------HVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQ 213 (700)
T ss_pred hccCCC-----------CceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 887432 37889999999999999998 98 68999999999999988877655444322 23566777
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHH
Q 005285 375 RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVD 410 (704)
Q Consensus 375 ~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~ 410 (704)
.+.| +.++.-+++..+... +...|+.+++.+
T Consensus 214 ~A~G-s~RdALsLLdQaia~----~~~~It~~~V~~ 244 (700)
T PRK12323 214 AAQG-SMRDALSLTDQAIAY----SAGNVSEEAVRG 244 (700)
T ss_pred HcCC-CHHHHHHHHHHHHHh----ccCCcCHHHHHH
Confidence 7665 677888888766533 223466655543
No 63
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.65 E-value=3.3e-15 Score=166.66 Aligned_cols=201 Identities=23% Similarity=0.323 Sum_probs=141.2
Q ss_pred cCCCccccceecCcccHHH---HHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccc
Q 005285 164 SDTKSMYKEVVLGGDVWDL---LDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF 240 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~---L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~ 240 (704)
...+.+|+|++|++++.+. |..++ ... .+.+++|+||||||||++|+++|+..+.+|+.+++...
T Consensus 5 ~~RP~~l~d~vGq~~~v~~~~~L~~~i---~~~---------~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~ 72 (413)
T PRK13342 5 RMRPKTLDEVVGQEHLLGPGKPLRRMI---EAG---------RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS 72 (413)
T ss_pred hhCCCCHHHhcCcHHHhCcchHHHHHH---HcC---------CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc
Confidence 3456789999999987554 55444 222 34589999999999999999999999999999987643
Q ss_pred cchhhhhHHHHHHHHHHHh----hCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEE
Q 005285 241 TDSEKSGAARINEMFSIAR----RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (704)
Q Consensus 241 ~~~~~~g~~~vr~lF~~Ak----~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (704)
+...++.+++.+. .....||||||+|.+.. ...+.|+..++.. .+++
T Consensus 73 ------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~----------~~q~~LL~~le~~-------------~iil 123 (413)
T PRK13342 73 ------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK----------AQQDALLPHVEDG-------------TITL 123 (413)
T ss_pred ------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH----------HHHHHHHHHhhcC-------------cEEE
Confidence 2234555665553 23568999999998842 2345666666541 2566
Q ss_pred EEEc--CCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCC-----CccccccHHHHHHhccCCCHHHHHHHHH
Q 005285 317 ICAT--NRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGK-----QLAEDVNFEELVFRTVGFSGADIRNLVN 389 (704)
Q Consensus 317 IaaT--N~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~-----~l~~dvdl~~La~~t~G~sgadL~~Lv~ 389 (704)
|++| |....+++++++ || ..+.+++++.++...+++..+... .+. +..+..+++.+.| ..+.+.+++.
T Consensus 124 I~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~-~~al~~l~~~s~G-d~R~aln~Le 198 (413)
T PRK13342 124 IGATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELD-DEALDALARLANG-DARRALNLLE 198 (413)
T ss_pred EEeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCC-HHHHHHHHHhCCC-CHHHHHHHHH
Confidence 7665 334578999999 88 789999999999999998776431 222 2235667776644 4555556666
Q ss_pred HHHHHHHHhCCCcccHHHHHHHHHHH
Q 005285 390 ESGIMSVRKGHSKIQQQDIVDVLDKQ 415 (704)
Q Consensus 390 eA~~~A~r~~~~~It~~dl~~Al~~~ 415 (704)
.+... ...|+.+++.+++...
T Consensus 199 ~~~~~-----~~~It~~~v~~~~~~~ 219 (413)
T PRK13342 199 LAALG-----VDSITLELLEEALQKR 219 (413)
T ss_pred HHHHc-----cCCCCHHHHHHHHhhh
Confidence 55433 4569999998888764
No 64
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=3.9e-15 Score=171.39 Aligned_cols=203 Identities=19% Similarity=0.242 Sum_probs=145.6
Q ss_pred ccCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC-----------
Q 005285 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP----------- 231 (704)
Q Consensus 163 ~~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~----------- 231 (704)
.++.+.+|+||+|++.+++.|+..+. . .+.+..+||+||+|||||++|+++|+.+++.
T Consensus 8 rKYRPqtFdEVIGQe~Vv~~L~~aL~---~--------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C 76 (830)
T PRK07003 8 RKWRPKDFASLVGQEHVVRALTHALD---G--------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVC 76 (830)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHh---c--------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCccc
Confidence 35678899999999988887776543 2 2467789999999999999999999988652
Q ss_pred -------------EEEEeCccccchhhhhHHHHHHHHHHHhh----CCCeEEEEccchhhhccCCCCChhHHHHHHHHHH
Q 005285 232 -------------FVFASGAEFTDSEKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIA 294 (704)
Q Consensus 232 -------------~v~is~s~~~~~~~~g~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~ 294 (704)
++.++.++ ..+...++.+.+.+.. ....|+||||+|.|.. ...|.||+
T Consensus 77 ~sCr~I~~G~h~DviEIDAas-----~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~----------~A~NALLK 141 (830)
T PRK07003 77 RACREIDEGRFVDYVEMDAAS-----NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN----------HAFNAMLK 141 (830)
T ss_pred HHHHHHhcCCCceEEEecccc-----cccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH----------HHHHHHHH
Confidence 22222211 1233456666665542 2347999999999942 35788999
Q ss_pred HhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHH
Q 005285 295 QLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELV 373 (704)
Q Consensus 295 ~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La 373 (704)
.|+.... .++||++||.++.|.+.|++ || .++.|..++.++..++|+..+....+. ++..+..|+
T Consensus 142 tLEEPP~-----------~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA 207 (830)
T PRK07003 142 TLEEPPP-----------HVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLA 207 (830)
T ss_pred HHHhcCC-----------CeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 8877433 37899999999999999999 99 689999999999999998877654443 233467778
Q ss_pred HhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHH
Q 005285 374 FRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVD 410 (704)
Q Consensus 374 ~~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~ 410 (704)
+...| +.++.-+++..+..+. ...|+.+++..
T Consensus 208 ~~A~G-smRdALsLLdQAia~~----~~~It~~~V~~ 239 (830)
T PRK07003 208 RAAQG-SMRDALSLTDQAIAYS----ANEVTETAVSG 239 (830)
T ss_pred HHcCC-CHHHHHHHHHHHHHhc----cCCcCHHHHHH
Confidence 77766 5677777776665432 23466655543
No 65
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=4.6e-15 Score=169.30 Aligned_cols=204 Identities=20% Similarity=0.280 Sum_probs=146.1
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCC-------------
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGL------------- 230 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~------------- 230 (704)
+..+.+|+||+|++.+++.|...+. + .+.+..+||+||||||||++|+++|+.+++
T Consensus 8 KyRPktFddVIGQe~vv~~L~~aI~---~--------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~ 76 (702)
T PRK14960 8 KYRPRNFNELVGQNHVSRALSSALE---R--------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCA 76 (702)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH---c--------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCH
Confidence 5677899999999998877766554 2 245788999999999999999999998865
Q ss_pred -----------CEEEEeCccccchhhhhHHHHHHHHHHHhh----CCCeEEEEccchhhhccCCCCChhHHHHHHHHHHH
Q 005285 231 -----------PFVFASGAEFTDSEKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQ 295 (704)
Q Consensus 231 -----------~~v~is~s~~~~~~~~g~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ 295 (704)
.++.+++++ ..+...+|.+...+.. ....|+||||+|.|.. ...|.|+..
T Consensus 77 sC~~I~~g~hpDviEIDAAs-----~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~----------~A~NALLKt 141 (702)
T PRK14960 77 TCKAVNEGRFIDLIEIDAAS-----RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST----------HSFNALLKT 141 (702)
T ss_pred HHHHHhcCCCCceEEecccc-----cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH----------HHHHHHHHH
Confidence 233333321 1123446666554432 3357999999998842 257888888
Q ss_pred hcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHH
Q 005285 296 LDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVF 374 (704)
Q Consensus 296 ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~ 374 (704)
|+.... .+.+|++|+.+..+.+.+++ |+ .++.|.+++.++..+.++..+....+. .+..+..|+.
T Consensus 142 LEEPP~-----------~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~ 207 (702)
T PRK14960 142 LEEPPE-----------HVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAE 207 (702)
T ss_pred HhcCCC-----------CcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 876432 36788888888889888887 88 579999999999999998877655443 2334677887
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 005285 375 RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (704)
Q Consensus 375 ~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al 412 (704)
.+.| +.+++-+++..+... +...|+.+++...+
T Consensus 208 ~S~G-dLRdALnLLDQaIay----g~g~IT~edV~~lL 240 (702)
T PRK14960 208 SAQG-SLRDALSLTDQAIAY----GQGAVHHQDVKEML 240 (702)
T ss_pred HcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHh
Confidence 7655 677777777665432 44568888876643
No 66
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=8.2e-15 Score=160.75 Aligned_cols=211 Identities=17% Similarity=0.273 Sum_probs=145.0
Q ss_pred ccCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEE--EeC---
Q 005285 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF--ASG--- 237 (704)
Q Consensus 163 ~~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~--is~--- 237 (704)
.+..+.+|+||+|++.+++.|+..+. .. +.|..+||+||||||||++|+++|++++...-. -.|
T Consensus 8 ~kyrP~~~~~iiGq~~~~~~l~~~~~---~~--------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c 76 (363)
T PRK14961 8 RKWRPQYFRDIIGQKHIVTAISNGLS---LG--------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKC 76 (363)
T ss_pred HHhCCCchhhccChHHHHHHHHHHHH---cC--------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 35677899999999988877765543 21 456789999999999999999999987642100 001
Q ss_pred -----------ccccch---hhhhHHHHHHHHHHHhh----CCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCC
Q 005285 238 -----------AEFTDS---EKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGD 299 (704)
Q Consensus 238 -----------s~~~~~---~~~g~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~ 299 (704)
.++... ...+...++.+.+.+.. ....|++|||+|.+. ....|.|+..++..
T Consensus 77 ~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~----------~~a~naLLk~lEe~ 146 (363)
T PRK14961 77 IICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS----------RHSFNALLKTLEEP 146 (363)
T ss_pred HHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC----------HHHHHHHHHHHhcC
Confidence 011111 01223346666555432 224699999999884 23567888888764
Q ss_pred cccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccC
Q 005285 300 KERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVG 378 (704)
Q Consensus 300 ~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G 378 (704)
.. .+.+|++|+.++.+.+++++ |+ ..+.|++|+.++..++++..+...... ++..+..++..+.|
T Consensus 147 ~~-----------~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G 212 (363)
T PRK14961 147 PQ-----------HIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG 212 (363)
T ss_pred CC-----------CeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 32 36777788888889999987 88 679999999999999998877654432 23346677777665
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHH
Q 005285 379 FSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLD 413 (704)
Q Consensus 379 ~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al~ 413 (704)
+.+++.+++..+... +...|+.+++.+++.
T Consensus 213 -~~R~al~~l~~~~~~----~~~~It~~~v~~~l~ 242 (363)
T PRK14961 213 -SMRDALNLLEHAINL----GKGNINIKNVTDMLG 242 (363)
T ss_pred -CHHHHHHHHHHHHHh----cCCCCCHHHHHHHHC
Confidence 677777777765533 456799988877653
No 67
>PLN03025 replication factor C subunit; Provisional
Probab=99.63 E-value=3.5e-15 Score=160.90 Aligned_cols=202 Identities=17% Similarity=0.220 Sum_probs=135.6
Q ss_pred ccCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcC-----CCEEEEeC
Q 005285 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESG-----LPFVFASG 237 (704)
Q Consensus 163 ~~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g-----~~~v~is~ 237 (704)
++..+.+|+|++|++++.+.|+.++. +. .. .++|||||||||||++|+++|+++. ..++.++.
T Consensus 5 ~kyrP~~l~~~~g~~~~~~~L~~~~~---~~--------~~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~ 72 (319)
T PLN03025 5 EKYRPTKLDDIVGNEDAVSRLQVIAR---DG--------NM-PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA 72 (319)
T ss_pred hhcCCCCHHHhcCcHHHHHHHHHHHh---cC--------CC-ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc
Confidence 46678899999999988877776544 22 12 2599999999999999999999873 23556665
Q ss_pred ccccchhhhhHHHHHHHH---HHHh----hCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccc
Q 005285 238 AEFTDSEKSGAARINEMF---SIAR----RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSL 310 (704)
Q Consensus 238 s~~~~~~~~g~~~vr~lF---~~Ak----~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~ 310 (704)
++... ...++... .... ...+.|++|||+|.+.. ...+.|+..|+.....
T Consensus 73 sd~~~-----~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~----------~aq~aL~~~lE~~~~~-------- 129 (319)
T PLN03025 73 SDDRG-----IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS----------GAQQALRRTMEIYSNT-------- 129 (319)
T ss_pred ccccc-----HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH----------HHHHHHHHHHhcccCC--------
Confidence 54322 11233322 2211 12357999999999842 2346666666543322
Q ss_pred CccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHH
Q 005285 311 RQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVN 389 (704)
Q Consensus 311 ~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~Lv~ 389 (704)
..+|.+||.+..+.+++++ |+ ..+.|+.|+.++..+.++..++...+. ++..+..++....| |++.++|
T Consensus 130 ---t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g----DlR~aln 199 (319)
T PLN03025 130 ---TRFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG----DMRQALN 199 (319)
T ss_pred ---ceEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHH
Confidence 4577788888889899988 87 579999999999999998877654432 23346777776544 6666666
Q ss_pred HHHHHHHHhCCCcccHHHHHHH
Q 005285 390 ESGIMSVRKGHSKIQQQDIVDV 411 (704)
Q Consensus 390 eA~~~A~r~~~~~It~~dl~~A 411 (704)
.....+ .+...|+.+++.+.
T Consensus 200 ~Lq~~~--~~~~~i~~~~v~~~ 219 (319)
T PLN03025 200 NLQATH--SGFGFVNQENVFKV 219 (319)
T ss_pred HHHHHH--hcCCCCCHHHHHHH
Confidence 554322 23456888877543
No 68
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.63 E-value=8.5e-15 Score=162.98 Aligned_cols=221 Identities=19% Similarity=0.267 Sum_probs=144.3
Q ss_pred CCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc-----CCCEEEEeCcc
Q 005285 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-----GLPFVFASGAE 239 (704)
Q Consensus 165 ~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~-----g~~~v~is~s~ 239 (704)
.+..+|++.+..++.......+..+..+| ...+.+++||||||||||+|++++++++ +..++++++.+
T Consensus 104 ~~~~tfd~fi~g~~n~~a~~~~~~~~~~~-------~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~ 176 (405)
T TIGR00362 104 NPKYTFDNFVVGKSNRLAHAAALAVAENP-------GKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEK 176 (405)
T ss_pred CCCCcccccccCCcHHHHHHHHHHHHhCc-------CccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHH
Confidence 35678999554444444444444444444 1235679999999999999999999876 67899999988
Q ss_pred ccchhhhhH--HHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEE
Q 005285 240 FTDSEKSGA--ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (704)
Q Consensus 240 ~~~~~~~g~--~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (704)
|........ ..+..+.+..+ .+.+|+|||+|.+.++. .....+..++..+.. .. ..+||
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~-----~~~~~l~~~~n~~~~---~~---------~~iii 237 (405)
T TIGR00362 177 FTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGKE-----RTQEEFFHTFNALHE---NG---------KQIVL 237 (405)
T ss_pred HHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCCH-----HHHHHHHHHHHHHHH---CC---------CCEEE
Confidence 765422111 11222222222 35799999999986431 111223333333221 11 13555
Q ss_pred EEcCCCCC---CcccccCCCccce--eeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHH
Q 005285 318 CATNRPDE---LDLEFVRPGRIDR--RLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNES 391 (704)
Q Consensus 318 aaTN~p~~---LD~aLlRpgRfd~--~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~Lv~eA 391 (704)
+++..|.. +++.+.+ ||.. .+.++.|+.++|.+|++..+....+. ++..+..||.+..+ +.++|..+++..
T Consensus 238 ts~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l 314 (405)
T TIGR00362 238 TSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRL 314 (405)
T ss_pred ecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 55555554 5677887 9964 79999999999999999888655443 23346778876554 788999999988
Q ss_pred HHHHHHhCCCcccHHHHHHHHHHH
Q 005285 392 GIMSVRKGHSKIQQQDIVDVLDKQ 415 (704)
Q Consensus 392 ~~~A~r~~~~~It~~dl~~Al~~~ 415 (704)
...|...+ ..||.+.+.+++...
T Consensus 315 ~~~a~~~~-~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 315 LAYASLTG-KPITLELAKEALKDL 337 (405)
T ss_pred HHHHHHhC-CCCCHHHHHHHHHHh
Confidence 87776544 569998888888754
No 69
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.63 E-value=6.7e-15 Score=165.96 Aligned_cols=221 Identities=18% Similarity=0.266 Sum_probs=147.0
Q ss_pred CCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc-----CCCEEEEeCcc
Q 005285 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-----GLPFVFASGAE 239 (704)
Q Consensus 165 ~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~-----g~~~v~is~s~ 239 (704)
.++.+|++.+.++..+.....+..+..+| | ....+++||||||||||+|++++|+++ +..++++++.+
T Consensus 116 ~~~~tfd~fv~g~~n~~a~~~~~~~~~~~------~-~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~ 188 (450)
T PRK00149 116 NPKYTFDNFVVGKSNRLAHAAALAVAENP------G-KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEK 188 (450)
T ss_pred CCCCcccccccCCCcHHHHHHHHHHHhCc------C-ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 45678999765555555555555555554 1 234679999999999999999999886 56789999998
Q ss_pred ccchhhhhH--HHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEE
Q 005285 240 FTDSEKSGA--ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (704)
Q Consensus 240 ~~~~~~~g~--~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (704)
|........ .....+.+..+ .+.+|+|||+|.+.++. .....+..++..+.. .. ..+||
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~-----~~~~~l~~~~n~l~~---~~---------~~iii 249 (450)
T PRK00149 189 FTNDFVNALRNNTMEEFKEKYR--SVDVLLIDDIQFLAGKE-----RTQEEFFHTFNALHE---AG---------KQIVL 249 (450)
T ss_pred HHHHHHHHHHcCcHHHHHHHHh--cCCEEEEehhhhhcCCH-----HHHHHHHHHHHHHHH---CC---------CcEEE
Confidence 865432211 11222222222 46799999999986431 111222233333221 11 13555
Q ss_pred EEcCCCCC---CcccccCCCccc--eeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHH
Q 005285 318 CATNRPDE---LDLEFVRPGRID--RRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNES 391 (704)
Q Consensus 318 aaTN~p~~---LD~aLlRpgRfd--~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~Lv~eA 391 (704)
+++..|.. +++.+.+ ||. ..+.+..|+.++|.+|++..+....+. ++..+..||....| +.++|..+++..
T Consensus 250 ts~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l 326 (450)
T PRK00149 250 TSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRL 326 (450)
T ss_pred ECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHH
Confidence 55555554 6788887 996 489999999999999999888654332 22336777877555 788899999988
Q ss_pred HHHHHHhCCCcccHHHHHHHHHHH
Q 005285 392 GIMSVRKGHSKIQQQDIVDVLDKQ 415 (704)
Q Consensus 392 ~~~A~r~~~~~It~~dl~~Al~~~ 415 (704)
...|...+ ..||.+.+.+++...
T Consensus 327 ~~~~~~~~-~~it~~~~~~~l~~~ 349 (450)
T PRK00149 327 IAYASLTG-KPITLELAKEALKDL 349 (450)
T ss_pred HHHHHhhC-CCCCHHHHHHHHHHh
Confidence 77776555 459999988888764
No 70
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=1.1e-14 Score=164.84 Aligned_cols=213 Identities=20% Similarity=0.314 Sum_probs=152.0
Q ss_pred ccCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEE--------
Q 005285 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF-------- 234 (704)
Q Consensus 163 ~~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~-------- 234 (704)
.+..+.+|+|++|++.+...|+..+. . .+.+.++||+||||||||++|+++|+.+++.--.
T Consensus 13 ~kyRP~~f~dliGq~~vv~~L~~ai~---~--------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~ 81 (507)
T PRK06645 13 RKYRPSNFAELQGQEVLVKVLSYTIL---N--------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT 81 (507)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHH---c--------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC
Confidence 35678899999999988777665433 1 2467899999999999999999999988652100
Q ss_pred ----EeCc--------cccch---hhhhHHHHHHHHHHHhhC----CCeEEEEccchhhhccCCCCChhHHHHHHHHHHH
Q 005285 235 ----ASGA--------EFTDS---EKSGAARINEMFSIARRN----APAFVFVDEIDAIAGRHARKDPRRRATFEALIAQ 295 (704)
Q Consensus 235 ----is~s--------~~~~~---~~~g~~~vr~lF~~Ak~~----~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ 295 (704)
-+|. ++.+. ...+...++.+.+.+... ...|++|||+|.+. ...++.|+..
T Consensus 82 C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls----------~~a~naLLk~ 151 (507)
T PRK06645 82 CEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS----------KGAFNALLKT 151 (507)
T ss_pred CCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC----------HHHHHHHHHH
Confidence 0011 11111 112345677777776532 34699999999884 2357888888
Q ss_pred hcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHH
Q 005285 296 LDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVF 374 (704)
Q Consensus 296 ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~ 374 (704)
|+... ..+++|++|+.++.+++++++ |+ ..++|..++.++..++++..+...... ++..+..|+.
T Consensus 152 LEepp-----------~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~ 217 (507)
T PRK06645 152 LEEPP-----------PHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAY 217 (507)
T ss_pred HhhcC-----------CCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 87532 236888888888999999988 88 578999999999999999888755543 2234677888
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 005285 375 RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (704)
Q Consensus 375 ~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al 412 (704)
.+.| +.+++-+++..+..++... ...||.+++.+.+
T Consensus 218 ~s~G-slR~al~~Ldkai~~~~~~-~~~It~~~V~~ll 253 (507)
T PRK06645 218 KSEG-SARDAVSILDQAASMSAKS-DNIISPQVINQML 253 (507)
T ss_pred HcCC-CHHHHHHHHHHHHHhhccC-CCCcCHHHHHHHH
Confidence 7666 7888888888887665322 2358888877654
No 71
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.62 E-value=1.2e-14 Score=157.11 Aligned_cols=209 Identities=19% Similarity=0.278 Sum_probs=136.8
Q ss_pred ccCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcC-----CCEEEEeC
Q 005285 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESG-----LPFVFASG 237 (704)
Q Consensus 163 ~~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g-----~~~v~is~ 237 (704)
++..+.+|++++|++++++.|..++. ++ ...++||+||||||||++|+++|+++. .+++++++
T Consensus 7 ~ky~P~~~~~~~g~~~~~~~L~~~~~---~~---------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~ 74 (337)
T PRK12402 7 EKYRPALLEDILGQDEVVERLSRAVD---SP---------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNV 74 (337)
T ss_pred HhhCCCcHHHhcCCHHHHHHHHHHHh---CC---------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEech
Confidence 35577889999999988777766543 22 123699999999999999999999873 45788888
Q ss_pred ccccchh--------------hh-------hHHHHHHHHHHHhh-----CCCeEEEEccchhhhccCCCCChhHHHHHHH
Q 005285 238 AEFTDSE--------------KS-------GAARINEMFSIARR-----NAPAFVFVDEIDAIAGRHARKDPRRRATFEA 291 (704)
Q Consensus 238 s~~~~~~--------------~~-------g~~~vr~lF~~Ak~-----~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~ 291 (704)
+++.... +. ....++.+...... ..+.+|+|||+|.+.. . ..+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~-------~---~~~~ 144 (337)
T PRK12402 75 ADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE-------D---AQQA 144 (337)
T ss_pred hhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH-------H---HHHH
Confidence 7764211 00 11223333322222 2246999999998832 1 2344
Q ss_pred HHHHhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHH
Q 005285 292 LIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFE 370 (704)
Q Consensus 292 LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~ 370 (704)
|...++..... ..+|++|+.+..+.+.+.+ |+ ..+.+.+|+.++..++++..+....+. ++..+.
T Consensus 145 L~~~le~~~~~-----------~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~ 210 (337)
T PRK12402 145 LRRIMEQYSRT-----------CRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLE 210 (337)
T ss_pred HHHHHHhccCC-----------CeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 55555443221 3455666667777778877 76 578999999999999999877654433 334567
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHH
Q 005285 371 ELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLD 413 (704)
Q Consensus 371 ~La~~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al~ 413 (704)
.|+..+. +|++.+++.....+. +...||.+++.+++.
T Consensus 211 ~l~~~~~----gdlr~l~~~l~~~~~--~~~~It~~~v~~~~~ 247 (337)
T PRK12402 211 LIAYYAG----GDLRKAILTLQTAAL--AAGEITMEAAYEALG 247 (337)
T ss_pred HHHHHcC----CCHHHHHHHHHHHHH--cCCCCCHHHHHHHhC
Confidence 7787763 356666666554442 224699999877654
No 72
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=8.1e-15 Score=166.70 Aligned_cols=205 Identities=20% Similarity=0.245 Sum_probs=146.4
Q ss_pred ccCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC-----------
Q 005285 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP----------- 231 (704)
Q Consensus 163 ~~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~----------- 231 (704)
.+..+.+|+||+|++.+++.|...+.. .+.|..+||+||||||||++|+++|+.+++.
T Consensus 8 ~kyRP~~f~divGq~~v~~~L~~~~~~-----------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 76 (509)
T PRK14958 8 RKWRPRCFQEVIGQAPVVRALSNALDQ-----------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDC 76 (509)
T ss_pred HHHCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCC
Confidence 356788999999999988877766542 2456789999999999999999999988653
Q ss_pred -------------EEEEeCccccchhhhhHHHHHHHHHHHhh----CCCeEEEEccchhhhccCCCCChhHHHHHHHHHH
Q 005285 232 -------------FVFASGAEFTDSEKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIA 294 (704)
Q Consensus 232 -------------~v~is~s~~~~~~~~g~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~ 294 (704)
++.+++++ ..+...+|.+.+.+.. ....|+||||+|.+.. ...|.|+.
T Consensus 77 ~~C~~i~~g~~~d~~eidaas-----~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~----------~a~naLLk 141 (509)
T PRK14958 77 ENCREIDEGRFPDLFEVDAAS-----RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG----------HSFNALLK 141 (509)
T ss_pred HHHHHHhcCCCceEEEEcccc-----cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH----------HHHHHHHH
Confidence 33333221 1233346666554432 2346999999999942 35788999
Q ss_pred HhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHH
Q 005285 295 QLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELV 373 (704)
Q Consensus 295 ~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La 373 (704)
.|+.... .+++|++|+.+..+.+.+++ |+ ..++|..++.++..+.++..+...... .+..+..++
T Consensus 142 ~LEepp~-----------~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia 207 (509)
T PRK14958 142 TLEEPPS-----------HVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLA 207 (509)
T ss_pred HHhccCC-----------CeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 8887433 36788888888999888888 88 578899999988888877776654433 233467777
Q ss_pred HhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 005285 374 FRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (704)
Q Consensus 374 ~~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al 412 (704)
..+.| +.+++.+++..+..+ +...|+.+++.+.+
T Consensus 208 ~~s~G-slR~al~lLdq~ia~----~~~~It~~~V~~~l 241 (509)
T PRK14958 208 RAANG-SVRDALSLLDQSIAY----GNGKVLIADVKTML 241 (509)
T ss_pred HHcCC-cHHHHHHHHHHHHhc----CCCCcCHHHHHHHH
Confidence 77654 788888888776533 34568888776554
No 73
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.61 E-value=3.8e-14 Score=156.88 Aligned_cols=220 Identities=15% Similarity=0.174 Sum_probs=145.5
Q ss_pred cccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc-----CCCEEEEeCccccc
Q 005285 169 MYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-----GLPFVFASGAEFTD 242 (704)
Q Consensus 169 ~f~dVvG~~~~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~-----g~~~v~is~s~~~~ 242 (704)
..+.++|.++..+.|...+.. +.+ ..|.+++|+||||||||++++.+++++ ++.+++++|.....
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~---------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRG---------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 445677777544444444322 221 245679999999999999999999876 57899999976432
Q ss_pred hh-----------h--------hhHHHHHHHHHHHhh-CCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCccc
Q 005285 243 SE-----------K--------SGAARINEMFSIARR-NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKER 302 (704)
Q Consensus 243 ~~-----------~--------~g~~~vr~lF~~Ak~-~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~ 302 (704)
.. + .....+..+.+..+. ..+.||+|||+|.+..+. ....+..|+..++....
T Consensus 99 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~------~~~~l~~l~~~~~~~~~- 171 (394)
T PRK00411 99 RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE------GNDVLYSLLRAHEEYPG- 171 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC------CchHHHHHHHhhhccCC-
Confidence 10 0 001122333333332 456899999999996211 12356666666554321
Q ss_pred CCccccccCccEEEEEEcCCCC---CCcccccCCCccc-eeeeeCCCCHHHHHHHHHHHhcCC---CccccccHHHHHHh
Q 005285 303 TGIDRFSLRQAVIFICATNRPD---ELDLEFVRPGRID-RRLYIGLPDAKQRVQIFDVHSAGK---QLAEDVNFEELVFR 375 (704)
Q Consensus 303 ~~~~~~~~~~~ViVIaaTN~p~---~LD~aLlRpgRfd-~~I~v~~Pd~~eR~~Il~~~l~~~---~l~~dvdl~~La~~ 375 (704)
.++.+|+++|..+ .+++.+.+ ||. ..|.|++++.++..+|++.++... ...++..++.+++.
T Consensus 172 ---------~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~ 240 (394)
T PRK00411 172 ---------ARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADL 240 (394)
T ss_pred ---------CeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHH
Confidence 1378888888764 46676665 663 578999999999999999877432 11223335667776
Q ss_pred ccCCC--HHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Q 005285 376 TVGFS--GADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQ 415 (704)
Q Consensus 376 t~G~s--gadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al~~~ 415 (704)
+.+.+ .+.+-+++..|+..|..++...|+.+|+..|+++.
T Consensus 241 ~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 241 TAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKS 282 (394)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 64432 34445888999989988898999999999999875
No 74
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=1.8e-14 Score=162.09 Aligned_cols=204 Identities=19% Similarity=0.271 Sum_probs=149.2
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCC-------------
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGL------------- 230 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~------------- 230 (704)
+..+.+|+||+|++.+.+.|+..+. . .+.|.++||+||||||||++|+.+|+.+++
T Consensus 6 KyRP~~f~dliGQe~vv~~L~~a~~---~--------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~ 74 (491)
T PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAFT---L--------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCH 74 (491)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH---c--------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccH
Confidence 4667899999999988877765433 1 246789999999999999999999986532
Q ss_pred -----------CEEEEeCccccchhhhhHHHHHHHHHHHhh----CCCeEEEEccchhhhccCCCCChhHHHHHHHHHHH
Q 005285 231 -----------PFVFASGAEFTDSEKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQ 295 (704)
Q Consensus 231 -----------~~v~is~s~~~~~~~~g~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ 295 (704)
.++.+++++ ..+...+|.+.+.+.. ....|++|||+|.+.. ..+|.|+..
T Consensus 75 ~C~~i~~~~~~Dv~eidaas-----~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~----------~A~NaLLK~ 139 (491)
T PRK14964 75 NCISIKNSNHPDVIEIDAAS-----NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN----------SAFNALLKT 139 (491)
T ss_pred HHHHHhccCCCCEEEEeccc-----CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH----------HHHHHHHHH
Confidence 234444432 1234457777666543 2356999999998842 367899999
Q ss_pred hcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHH
Q 005285 296 LDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVF 374 (704)
Q Consensus 296 ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~ 374 (704)
|+.... .+++|++|+.++.+.+.+++ |+ ..+.|..++.++..+.++..+...... ++..+..|++
T Consensus 140 LEePp~-----------~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~ 205 (491)
T PRK14964 140 LEEPAP-----------HVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAE 205 (491)
T ss_pred HhCCCC-----------CeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 987443 36888888888999999998 88 578999999999999988877654433 2334677787
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 005285 375 RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (704)
Q Consensus 375 ~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al 412 (704)
.+.| +.+++.+++..+..++ ...|+.+++.+.+
T Consensus 206 ~s~G-slR~alslLdqli~y~----~~~It~e~V~~ll 238 (491)
T PRK14964 206 NSSG-SMRNALFLLEQAAIYS----NNKISEKSVRDLL 238 (491)
T ss_pred HcCC-CHHHHHHHHHHHHHhc----CCCCCHHHHHHHH
Confidence 7655 7888888888776654 2368888887653
No 75
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=2.7e-14 Score=164.97 Aligned_cols=204 Identities=23% Similarity=0.302 Sum_probs=145.7
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC------------
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP------------ 231 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~------------ 231 (704)
+..+.+|+||+|++.+++.|...+.. .+.+..+||+||+|||||++|+++|+.+++.
T Consensus 9 KyRP~~f~divGQe~vv~~L~~~l~~-----------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~ 77 (647)
T PRK07994 9 KWRPQTFAEVVGQEHVLTALANALDL-----------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECD 77 (647)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCH
Confidence 45678999999999888777655542 2356778999999999999999999987662
Q ss_pred ------------EEEEeCccccchhhhhHHHHHHHHHHHhh----CCCeEEEEccchhhhccCCCCChhHHHHHHHHHHH
Q 005285 232 ------------FVFASGAEFTDSEKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQ 295 (704)
Q Consensus 232 ------------~v~is~s~~~~~~~~g~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ 295 (704)
++.+++.+ ..+...+|.+.+.+.. ....|+||||+|.|. ....|.||+.
T Consensus 78 ~C~~i~~g~~~D~ieidaas-----~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls----------~~a~NALLKt 142 (647)
T PRK07994 78 NCREIEQGRFVDLIEIDAAS-----RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS----------RHSFNALLKT 142 (647)
T ss_pred HHHHHHcCCCCCceeecccc-----cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC----------HHHHHHHHHH
Confidence 22222221 1223345655544432 335699999999984 2468999999
Q ss_pred hcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHH
Q 005285 296 LDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVF 374 (704)
Q Consensus 296 ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~ 374 (704)
|+.... .+++|++|+.+..|.+.+++ |+ ..+.|..++.++..+.|+..+....+. .+..+..|+.
T Consensus 143 LEEPp~-----------~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~ 208 (647)
T PRK07994 143 LEEPPE-----------HVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLAR 208 (647)
T ss_pred HHcCCC-----------CeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 987443 36888888899999999998 97 789999999999999998877544432 2334667777
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 005285 375 RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (704)
Q Consensus 375 ~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al 412 (704)
.+.| +.++.-+++..|... +...|+.+++...+
T Consensus 209 ~s~G-s~R~Al~lldqaia~----~~~~it~~~v~~~l 241 (647)
T PRK07994 209 AADG-SMRDALSLTDQAIAS----GNGQVTTDDVSAML 241 (647)
T ss_pred HcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 7666 677777777665432 33457777766544
No 76
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=2.8e-14 Score=162.00 Aligned_cols=203 Identities=18% Similarity=0.231 Sum_probs=143.2
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC------------
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP------------ 231 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~------------ 231 (704)
+..+.+|+||+|++.+++.|+..+.. .+.|..+||+||||||||++|+++|+.+...
T Consensus 7 KyRP~~~~dvvGq~~v~~~L~~~i~~-----------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~s 75 (504)
T PRK14963 7 RARPITFDEVVGQEHVKEVLLAALRQ-----------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECES 75 (504)
T ss_pred hhCCCCHHHhcChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChh
Confidence 56778999999999998888776653 2456778999999999999999999987531
Q ss_pred -----------EEEEeCccccchhhhhHHHHHHHHHHHhh----CCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHh
Q 005285 232 -----------FVFASGAEFTDSEKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQL 296 (704)
Q Consensus 232 -----------~v~is~s~~~~~~~~g~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~l 296 (704)
++.+++++ ..+...+|.+.+.+.. ..+.||+|||+|.+. ...++.|+..|
T Consensus 76 c~~i~~~~h~dv~el~~~~-----~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls----------~~a~naLLk~L 140 (504)
T PRK14963 76 CLAVRRGAHPDVLEIDAAS-----NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS----------KSAFNALLKTL 140 (504)
T ss_pred hHHHhcCCCCceEEecccc-----cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC----------HHHHHHHHHHH
Confidence 33444321 1223345655444432 346799999999773 23578899888
Q ss_pred cCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHh
Q 005285 297 DGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFR 375 (704)
Q Consensus 297 d~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~ 375 (704)
+.... .+++|++||.+..+.+.+.+ |+ ..+.|..|+.++..+.++..+....+. ++..+..++..
T Consensus 141 Eep~~-----------~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~ 206 (504)
T PRK14963 141 EEPPE-----------HVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARL 206 (504)
T ss_pred HhCCC-----------CEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 76432 36778888989999999988 87 479999999999999998877655443 23346677777
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 005285 376 TVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (704)
Q Consensus 376 t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al 412 (704)
+.| +.+++.++++.+.. . ...|+.+++.+.+
T Consensus 207 s~G-dlR~aln~Lekl~~---~--~~~It~~~V~~~l 237 (504)
T PRK14963 207 ADG-AMRDAESLLERLLA---L--GTPVTRKQVEEAL 237 (504)
T ss_pred cCC-CHHHHHHHHHHHHh---c--CCCCCHHHHHHHH
Confidence 655 45555555555432 1 2368888877664
No 77
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=1.7e-14 Score=166.16 Aligned_cols=211 Identities=21% Similarity=0.296 Sum_probs=148.3
Q ss_pred ccCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEE--EEeCc--
Q 005285 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFV--FASGA-- 238 (704)
Q Consensus 163 ~~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v--~is~s-- 238 (704)
.+..+.+|+||+|++.+++.|+..+. .. +.+.++||+||+|||||++|+++|+.++++-. ...|.
T Consensus 8 rKYRP~tFddIIGQe~vv~~L~~ai~---~~--------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C 76 (709)
T PRK08691 8 RKWRPKTFADLVGQEHVVKALQNALD---EG--------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVC 76 (709)
T ss_pred HHhCCCCHHHHcCcHHHHHHHHHHHH---cC--------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCccc
Confidence 35678899999999998887776654 22 46789999999999999999999998765310 00011
Q ss_pred ------------cccc---hhhhhHHHHHHHHHHHhh----CCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCC
Q 005285 239 ------------EFTD---SEKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGD 299 (704)
Q Consensus 239 ------------~~~~---~~~~g~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~ 299 (704)
++.+ ....+...+|.+.+.+.. ....|+||||+|.+. ...+|.||..|+..
T Consensus 77 ~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls----------~~A~NALLKtLEEP 146 (709)
T PRK08691 77 QSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS----------KSAFNAMLKTLEEP 146 (709)
T ss_pred HHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC----------HHHHHHHHHHHHhC
Confidence 1111 112234457777665432 234799999999873 23578899988764
Q ss_pred cccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccC
Q 005285 300 KERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVG 378 (704)
Q Consensus 300 ~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G 378 (704)
.. .+.+|++||.+..+.+.+++ || ..+.|..++.++..+.|+..+....+. .+..+..|++.+.|
T Consensus 147 p~-----------~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G 212 (709)
T PRK08691 147 PE-----------HVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG 212 (709)
T ss_pred CC-----------CcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC
Confidence 32 36788888889999988886 88 578889999999999998887765443 22346778877654
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHH
Q 005285 379 FSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLD 413 (704)
Q Consensus 379 ~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al~ 413 (704)
+.+++.+++..+..+ +...|+.+++...+.
T Consensus 213 -slRdAlnLLDqaia~----g~g~It~e~V~~lLG 242 (709)
T PRK08691 213 -SMRDALSLLDQAIAL----GSGKVAENDVRQMIG 242 (709)
T ss_pred -CHHHHHHHHHHHHHh----cCCCcCHHHHHHHHc
Confidence 788888888776654 344688777766543
No 78
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.59 E-value=5.2e-14 Score=160.70 Aligned_cols=222 Identities=15% Similarity=0.205 Sum_probs=145.0
Q ss_pred CCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc-----CCCEEEEeCcc
Q 005285 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-----GLPFVFASGAE 239 (704)
Q Consensus 165 ~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~-----g~~~v~is~s~ 239 (704)
....+|++.+..+........+.....++. .....++|||++|||||+|++|+|+++ +..++++++.+
T Consensus 282 ~~~~TFDnFvvG~sN~~A~aaa~avae~~~-------~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaee 354 (617)
T PRK14086 282 NPKYTFDTFVIGASNRFAHAAAVAVAEAPA-------KAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEE 354 (617)
T ss_pred CCCCCHhhhcCCCccHHHHHHHHHHHhCcc-------ccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 356799999876654433334444444431 123459999999999999999999976 57889999998
Q ss_pred ccchhhhhH-HHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEE
Q 005285 240 FTDSEKSGA-ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFIC 318 (704)
Q Consensus 240 ~~~~~~~g~-~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIa 318 (704)
|........ ......|... -..+.+|+||||+.+.++. .....+..+++.+.... --||.
T Consensus 355 f~~el~~al~~~~~~~f~~~-y~~~DLLlIDDIq~l~gke-----~tqeeLF~l~N~l~e~g-------------k~III 415 (617)
T PRK14086 355 FTNEFINSIRDGKGDSFRRR-YREMDILLVDDIQFLEDKE-----STQEEFFHTFNTLHNAN-------------KQIVL 415 (617)
T ss_pred HHHHHHHHHHhccHHHHHHH-hhcCCEEEEehhccccCCH-----HHHHHHHHHHHHHHhcC-------------CCEEE
Confidence 876532221 1112234322 2346899999999986431 11222333444432211 12344
Q ss_pred EcCCC----CCCcccccCCCccce--eeeeCCCCHHHHHHHHHHHhcCCCccccc-cHHHHHHhccCCCHHHHHHHHHHH
Q 005285 319 ATNRP----DELDLEFVRPGRIDR--RLYIGLPDAKQRVQIFDVHSAGKQLAEDV-NFEELVFRTVGFSGADIRNLVNES 391 (704)
Q Consensus 319 aTN~p----~~LD~aLlRpgRfd~--~I~v~~Pd~~eR~~Il~~~l~~~~l~~dv-dl~~La~~t~G~sgadL~~Lv~eA 391 (704)
|+|.+ ..+++.|.+ ||.. .+.+..||.+.|.+||+.++....+.-+. -+..|+.+..+ +.++|..+++..
T Consensus 416 TSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL 492 (617)
T PRK14086 416 SSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISR-NIRELEGALIRV 492 (617)
T ss_pred ecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHH
Confidence 66653 357788888 9954 77999999999999999888765554222 35667766543 688899888887
Q ss_pred HHHHHHhCCCcccHHHHHHHHHHHH
Q 005285 392 GIMSVRKGHSKIQQQDIVDVLDKQL 416 (704)
Q Consensus 392 ~~~A~r~~~~~It~~dl~~Al~~~~ 416 (704)
...+...+ ..|+.+.+.+++...+
T Consensus 493 ~a~a~~~~-~~itl~la~~vL~~~~ 516 (617)
T PRK14086 493 TAFASLNR-QPVDLGLTEIVLRDLI 516 (617)
T ss_pred HHHHHhhC-CCCCHHHHHHHHHHhh
Confidence 76665554 5589988888886543
No 79
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.59 E-value=4.2e-14 Score=151.98 Aligned_cols=204 Identities=19% Similarity=0.261 Sum_probs=133.4
Q ss_pred ccCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccc
Q 005285 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (704)
Q Consensus 163 ~~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~ 242 (704)
++..+.+|+|++|++++++.+..++. + ...|..+||+||||+|||++|+++|++.+.+++.+++++ ..
T Consensus 13 ~kyrP~~~~~~~~~~~~~~~l~~~~~---~--------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~~ 80 (316)
T PHA02544 13 QKYRPSTIDECILPAADKETFKSIVK---K--------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-CR 80 (316)
T ss_pred eccCCCcHHHhcCcHHHHHHHHHHHh---c--------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-cc
Confidence 46778999999999998887776654 2 235677788999999999999999999999999999887 22
Q ss_pred hhhhhHHHHHHHHHHHh-hCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcC
Q 005285 243 SEKSGAARINEMFSIAR-RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATN 321 (704)
Q Consensus 243 ~~~~g~~~vr~lF~~Ak-~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN 321 (704)
.......+........ ...+.||+|||+|.+... .. .+.|...++.... ++.+|++||
T Consensus 81 -~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~------~~---~~~L~~~le~~~~-----------~~~~Ilt~n 139 (316)
T PHA02544 81 -IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA------DA---QRHLRSFMEAYSK-----------NCSFIITAN 139 (316)
T ss_pred -HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH------HH---HHHHHHHHHhcCC-----------CceEEEEcC
Confidence 1111111222111111 134789999999988321 12 2233333443221 257888999
Q ss_pred CCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhc---------CCCccccccHHHHHHhccCCCHHHHHHHHHHHH
Q 005285 322 RPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA---------GKQLAEDVNFEELVFRTVGFSGADIRNLVNESG 392 (704)
Q Consensus 322 ~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~---------~~~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~ 392 (704)
.+..+++++++ ||. .+.++.|+.+++.++++.++. +..+.+ ..+..++....| |++.+++...
T Consensus 140 ~~~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~-~al~~l~~~~~~----d~r~~l~~l~ 211 (316)
T PHA02544 140 NKNGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDM-KVLAALVKKNFP----DFRRTINELQ 211 (316)
T ss_pred ChhhchHHHHh--hce-EEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHhcCC----CHHHHHHHHH
Confidence 99999999998 994 789999999999888764322 222221 124566655443 5666666555
Q ss_pred HHHHHhCCCcccHHHHHH
Q 005285 393 IMSVRKGHSKIQQQDIVD 410 (704)
Q Consensus 393 ~~A~r~~~~~It~~dl~~ 410 (704)
..+. ...|+.+++..
T Consensus 212 ~~~~---~~~i~~~~l~~ 226 (316)
T PHA02544 212 RYAS---TGKIDAGILSE 226 (316)
T ss_pred HHHc---cCCCCHHHHHH
Confidence 4442 24577666544
No 80
>PRK06893 DNA replication initiation factor; Validated
Probab=99.59 E-value=6e-14 Score=144.34 Aligned_cols=212 Identities=11% Similarity=0.128 Sum_probs=129.0
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccc
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEF 240 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~ 240 (704)
-.+..+|++.+++++.. .+..+.... .. .....++||||||||||+|++|+|+++ +....+++..+.
T Consensus 9 ~~~~~~fd~f~~~~~~~-~~~~~~~~~------~~---~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~ 78 (229)
T PRK06893 9 QIDDETLDNFYADNNLL-LLDSLRKNF------ID---LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS 78 (229)
T ss_pred CCCcccccccccCChHH-HHHHHHHHh------hc---cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh
Confidence 35678999999877532 122221111 11 122468999999999999999999885 455666665422
Q ss_pred cchhhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEc
Q 005285 241 TDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (704)
Q Consensus 241 ~~~~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (704)
... ...+++..+ ...+|+|||++.+.+. ......+..+++.+... . ..++|+.++
T Consensus 79 ~~~-------~~~~~~~~~--~~dlLilDDi~~~~~~-----~~~~~~l~~l~n~~~~~---~--------~~illits~ 133 (229)
T PRK06893 79 QYF-------SPAVLENLE--QQDLVCLDDLQAVIGN-----EEWELAIFDLFNRIKEQ---G--------KTLLLISAD 133 (229)
T ss_pred hhh-------hHHHHhhcc--cCCEEEEeChhhhcCC-----hHHHHHHHHHHHHHHHc---C--------CcEEEEeCC
Confidence 111 112233332 3579999999998532 22233445555544321 0 113455555
Q ss_pred CCCCCCc---ccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 005285 321 NRPDELD---LEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSV 396 (704)
Q Consensus 321 N~p~~LD---~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~ 396 (704)
..|..++ +.|.+..++...+.++.|+.++|.+|++.++....+. ++.-+..|+++..| +.+.+.++++.....+.
T Consensus 134 ~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~~ 212 (229)
T PRK06893 134 CSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDALDLLDKASL 212 (229)
T ss_pred CChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHH
Confidence 5576654 7888733335688999999999999999777544432 22235677777654 67778888876543333
Q ss_pred HhCCCcccHHHHHHHH
Q 005285 397 RKGHSKIQQQDIVDVL 412 (704)
Q Consensus 397 r~~~~~It~~dl~~Al 412 (704)
.++ ..||...+.+++
T Consensus 213 ~~~-~~it~~~v~~~L 227 (229)
T PRK06893 213 QAQ-RKLTIPFVKEIL 227 (229)
T ss_pred hcC-CCCCHHHHHHHh
Confidence 333 468888776654
No 81
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=3.9e-14 Score=166.00 Aligned_cols=194 Identities=20% Similarity=0.259 Sum_probs=136.3
Q ss_pred ccCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCE-------EEE
Q 005285 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPF-------VFA 235 (704)
Q Consensus 163 ~~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~-------v~i 235 (704)
.+.++.+|+||+|++.+++.|+..+. .. +.+..+||+||||||||++||++|+.+++.- ..+
T Consensus 8 eKyRP~tFddIIGQe~Iv~~LknaI~---~~--------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C 76 (944)
T PRK14949 8 RKWRPATFEQMVGQSHVLHALTNALT---QQ--------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC 76 (944)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHH---hC--------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc
Confidence 35677899999999998877765543 22 4577789999999999999999999887631 100
Q ss_pred -eCc--------cccch---hhhhHHHHHHHHHHHhh----CCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCC
Q 005285 236 -SGA--------EFTDS---EKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGD 299 (704)
Q Consensus 236 -s~s--------~~~~~---~~~g~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~ 299 (704)
+|. ++.+. ...+...+|.+.+.+.. ....|+||||+|.|. ...+|.||..|+..
T Consensus 77 ~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT----------~eAqNALLKtLEEP 146 (944)
T PRK14949 77 SSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS----------RSSFNALLKTLEEP 146 (944)
T ss_pred hHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC----------HHHHHHHHHHHhcc
Confidence 000 01111 01223345655544432 234699999999994 34789999999874
Q ss_pred cccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccC
Q 005285 300 KERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVG 378 (704)
Q Consensus 300 ~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G 378 (704)
.. .+++|++|+.+..|.+.+++ |+ .++.|..++.++..+.|+..+....+. .+..+..|+..+.|
T Consensus 147 P~-----------~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G 212 (944)
T PRK14949 147 PE-----------HVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG 212 (944)
T ss_pred CC-----------CeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 43 36788888889999999998 88 689999999999999998877554332 22346777777666
Q ss_pred CCHHHHHHHHHHHH
Q 005285 379 FSGADIRNLVNESG 392 (704)
Q Consensus 379 ~sgadL~~Lv~eA~ 392 (704)
+.+++-+++..+.
T Consensus 213 -d~R~ALnLLdQal 225 (944)
T PRK14949 213 -SMRDALSLTDQAI 225 (944)
T ss_pred -CHHHHHHHHHHHH
Confidence 5777778877655
No 82
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.59 E-value=4.4e-14 Score=169.56 Aligned_cols=218 Identities=14% Similarity=0.168 Sum_probs=148.5
Q ss_pred CCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc----------CCCEEE
Q 005285 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES----------GLPFVF 234 (704)
Q Consensus 165 ~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~----------g~~~v~ 234 (704)
..+-++++++|+++ +++.++..|... ...+++|+||||||||++|+.+|... +..++.
T Consensus 181 ~r~~~ld~~iGr~~---ei~~~i~~l~r~---------~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~ 248 (852)
T TIGR03345 181 AREGKIDPVLGRDD---EIRQMIDILLRR---------RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLS 248 (852)
T ss_pred hcCCCCCcccCCHH---HHHHHHHHHhcC---------CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEE
Confidence 34568999999985 466666655443 23478999999999999999999875 245778
Q ss_pred EeCccccch---hhhhHHHHHHHHHHHhh-CCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccc
Q 005285 235 ASGAEFTDS---EKSGAARINEMFSIARR-NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSL 310 (704)
Q Consensus 235 is~s~~~~~---~~~g~~~vr~lF~~Ak~-~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~ 310 (704)
++.+.+... .+....+++.+|+.++. ..++||||||+|.+.+.+.+.+. ....|-|+..+..
T Consensus 249 l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~--~d~~n~Lkp~l~~------------ 314 (852)
T TIGR03345 249 LDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQ--GDAANLLKPALAR------------ 314 (852)
T ss_pred eehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcccc--ccHHHHhhHHhhC------------
Confidence 887776532 45667899999999875 46899999999999764322111 1122334433332
Q ss_pred CccEEEEEEcCCCC-----CCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCC----c-cccccHHHHHHhccCCC
Q 005285 311 RQAVIFICATNRPD-----ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQ----L-AEDVNFEELVFRTVGFS 380 (704)
Q Consensus 311 ~~~ViVIaaTN~p~-----~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~----l-~~dvdl~~La~~t~G~s 380 (704)
..+.+|+||+..+ .+|+||.| ||. .|.|+.|+.+++.+||+.+..... + ..+..+..++..+.+|.
T Consensus 315 -G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 315 -GELRTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred -CCeEEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 2389999998643 48999999 995 899999999999999875543321 1 13445677777776653
Q ss_pred -----HHHHHHHHHHHHHHHHHh-CCCcccHHHHHHHH
Q 005285 381 -----GADIRNLVNESGIMSVRK-GHSKIQQQDIVDVL 412 (704)
Q Consensus 381 -----gadL~~Lv~eA~~~A~r~-~~~~It~~dl~~Al 412 (704)
+..--.|+.+|+.....+ ....+..+++.+.+
T Consensus 391 ~~r~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~ 428 (852)
T TIGR03345 391 PGRQLPDKAVSLLDTACARVALSQNATPAALEDLRRRI 428 (852)
T ss_pred ccccCccHHHHHHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 344456788876654432 33344445554444
No 83
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.59 E-value=2.3e-14 Score=158.07 Aligned_cols=187 Identities=16% Similarity=0.243 Sum_probs=132.1
Q ss_pred ccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC----------------
Q 005285 168 SMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP---------------- 231 (704)
Q Consensus 168 ~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~---------------- 231 (704)
..|++|+|++.+++.|+..+..-+++ +...+.+.|.++||+||||+|||++|+++|+.+...
T Consensus 2 ~~f~~IiGq~~~~~~L~~~i~~~~~~--~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 2 SVWDDLVGQEAVVAELRAAARAARAD--VAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred ChhhhccChHHHHHHHHHHHHhcccc--ccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 35999999999999988887754332 333455678999999999999999999999876442
Q ss_pred -------EEEEeCccccchhhhhHHHHHHHHHHHhhC----CCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCc
Q 005285 232 -------FVFASGAEFTDSEKSGAARINEMFSIARRN----APAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDK 300 (704)
Q Consensus 232 -------~v~is~s~~~~~~~~g~~~vr~lF~~Ak~~----~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~ 300 (704)
+..+.... ...+...+|.+++.+... ...|+||||+|.+.. ...|.||+.|+...
T Consensus 80 ~~~~hpD~~~i~~~~----~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~----------~aanaLLk~LEep~ 145 (394)
T PRK07940 80 LAGTHPDVRVVAPEG----LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE----------RAANALLKAVEEPP 145 (394)
T ss_pred hcCCCCCEEEecccc----ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH----------HHHHHHHHHhhcCC
Confidence 11121110 112344578888877542 346999999999942 24588999987643
Q ss_pred ccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCC
Q 005285 301 ERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFS 380 (704)
Q Consensus 301 ~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~s 380 (704)
. ++++|.+|+.++.|.|++++ |+ ..+.|++|+.++..+++.... ... ......++..+.|..
T Consensus 146 ~-----------~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~s~G~~ 207 (394)
T PRK07940 146 P-----------RTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GVD-PETARRAARASQGHI 207 (394)
T ss_pred C-----------CCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCCCH
Confidence 2 24556566668999999998 88 689999999999888876332 222 234567888888877
Q ss_pred HHHHHHHH
Q 005285 381 GADIRNLV 388 (704)
Q Consensus 381 gadL~~Lv 388 (704)
+..+.-+.
T Consensus 208 ~~A~~l~~ 215 (394)
T PRK07940 208 GRARRLAT 215 (394)
T ss_pred HHHHHHhc
Confidence 76655443
No 84
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=3.8e-14 Score=163.20 Aligned_cols=204 Identities=20% Similarity=0.288 Sum_probs=147.2
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCC-------------
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGL------------- 230 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~------------- 230 (704)
+..+.+|+||+|++.+.+.|+..+.. .+.++.+||+||+|||||++|+.+|+.+++
T Consensus 9 k~rP~~f~~viGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~ 77 (559)
T PRK05563 9 KWRPQTFEDVVGQEHITKTLKNAIKQ-----------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECE 77 (559)
T ss_pred HhCCCcHHhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccH
Confidence 45678999999999988777766543 235678999999999999999999998753
Q ss_pred -----------CEEEEeCccccchhhhhHHHHHHHHHHHhh----CCCeEEEEccchhhhccCCCCChhHHHHHHHHHHH
Q 005285 231 -----------PFVFASGAEFTDSEKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQ 295 (704)
Q Consensus 231 -----------~~v~is~s~~~~~~~~g~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ 295 (704)
+++.++++. ..+...+|.+.+.+.. ....|++|||+|.|. ...+|.|+..
T Consensus 78 ~C~~i~~g~~~dv~eidaas-----~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt----------~~a~naLLKt 142 (559)
T PRK05563 78 ICKAITNGSLMDVIEIDAAS-----NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS----------TGAFNALLKT 142 (559)
T ss_pred HHHHHhcCCCCCeEEeeccc-----cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC----------HHHHHHHHHH
Confidence 233333221 1334557777776653 235699999999884 2367899998
Q ss_pred hcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHH
Q 005285 296 LDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVF 374 (704)
Q Consensus 296 ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~ 374 (704)
|+.... .+++|++|+.++.+++.+++ |+. .+.|..|+..+..+.++..+....+. ++..+..++.
T Consensus 143 LEepp~-----------~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~ 208 (559)
T PRK05563 143 LEEPPA-----------HVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIAR 208 (559)
T ss_pred hcCCCC-----------CeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 876432 36778788889999999988 884 68899999999999998877655433 2234667777
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 005285 375 RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (704)
Q Consensus 375 ~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al 412 (704)
.+.| +.+++-+++..+..++ ...|+.+++.+++
T Consensus 209 ~s~G-~~R~al~~Ldq~~~~~----~~~It~~~V~~vl 241 (559)
T PRK05563 209 AAEG-GMRDALSILDQAISFG----DGKVTYEDALEVT 241 (559)
T ss_pred HcCC-CHHHHHHHHHHHHHhc----cCCCCHHHHHHHh
Confidence 7665 7778778877665542 3468887766543
No 85
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.2e-14 Score=163.44 Aligned_cols=170 Identities=22% Similarity=0.330 Sum_probs=128.5
Q ss_pred ceecCcccHHHHHHHHHH--hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccch------
Q 005285 172 EVVLGGDVWDLLDELMIY--MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS------ 243 (704)
Q Consensus 172 dVvG~~~~k~~L~elv~~--l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~------ 243 (704)
|--|.+++|+.+-|++.. |++. -..+-+.|+||||+|||+++|+||..+|..|+.+|..-+.+.
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs--------~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGS--------VQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhccc--------CCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 445778888888887764 3333 334567899999999999999999999999999987665432
Q ss_pred ----hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccc----cCccEE
Q 005285 244 ----EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFS----LRQAVI 315 (704)
Q Consensus 244 ----~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~----~~~~Vi 315 (704)
.|....++-+..+..+.+.| +++|||||.++ +.-.+++. .+||+.||..++.+-.+++- .-..|+
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG-~g~qGDPa-----sALLElLDPEQNanFlDHYLdVp~DLSkVL 556 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLG-SGHQGDPA-----SALLELLDPEQNANFLDHYLDVPVDLSKVL 556 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhC-CCCCCChH-----HHHHHhcChhhccchhhhccccccchhheE
Confidence 12223345566677777777 78889999997 32233333 67888888776655433321 235699
Q ss_pred EEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhc
Q 005285 316 FICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA 359 (704)
Q Consensus 316 VIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~ 359 (704)
+|||.|..+.|+++|+. |+ ..|+++-+..++..+|-+.|+-
T Consensus 557 FicTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 557 FICTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred EEEeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhhh
Confidence 99999999999999999 99 5899999999999999998874
No 86
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.58 E-value=4.2e-14 Score=148.53 Aligned_cols=208 Identities=23% Similarity=0.323 Sum_probs=140.1
Q ss_pred ccCCCccccceecCcccH---HHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC---EEEEe
Q 005285 163 VSDTKSMYKEVVLGGDVW---DLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP---FVFAS 236 (704)
Q Consensus 163 ~~~~~~~f~dVvG~~~~k---~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~---~v~is 236 (704)
+...+.+++|.+|++++. ..|+.+++.-+-| +++|+||||||||+|||.||....-+ |+.++
T Consensus 130 ermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ip------------SmIlWGppG~GKTtlArlia~tsk~~SyrfvelS 197 (554)
T KOG2028|consen 130 ERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIP------------SMILWGPPGTGKTTLARLIASTSKKHSYRFVELS 197 (554)
T ss_pred hhcCcchHHHhcchhhhcCcchHHHHHHHcCCCC------------ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEe
Confidence 456678999999998753 4555555544444 79999999999999999999988766 66665
Q ss_pred CccccchhhhhHHHHHHHHHHHhh-----CCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccC
Q 005285 237 GAEFTDSEKSGAARINEMFSIARR-----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLR 311 (704)
Q Consensus 237 ~s~~~~~~~~g~~~vr~lF~~Ak~-----~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~ 311 (704)
... .+...+|++|++++. ....|||||||+.+... ....||-..+.
T Consensus 198 At~------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNks----------QQD~fLP~VE~------------- 248 (554)
T KOG2028|consen 198 ATN------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKS----------QQDTFLPHVEN------------- 248 (554)
T ss_pred ccc------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhh----------hhhcccceecc-------------
Confidence 443 233458899998875 34689999999988421 12233332221
Q ss_pred ccEEEEEEc--CCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhc---C-----CCccc------cccHHHHHHh
Q 005285 312 QAVIFICAT--NRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA---G-----KQLAE------DVNFEELVFR 375 (704)
Q Consensus 312 ~~ViVIaaT--N~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~---~-----~~l~~------dvdl~~La~~ 375 (704)
..|++|+|| |..-.|..||++ |+ +++.+.....+....||..-+. . .++.. +--++.++..
T Consensus 249 G~I~lIGATTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~l 325 (554)
T KOG2028|consen 249 GDITLIGATTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYL 325 (554)
T ss_pred CceEEEecccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHh
Confidence 237888876 555679999999 88 7788888899999988886332 1 11211 2235677887
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHhC---CCcccHHHHHHHHHH
Q 005285 376 TVGFSGADIRNLVNESGIMSVRKG---HSKIQQQDIVDVLDK 414 (704)
Q Consensus 376 t~G~sgadL~~Lv~eA~~~A~r~~---~~~It~~dl~~Al~~ 414 (704)
+.|=..+.|..|--.+.+...|.| ...++.+|+.+++.+
T Consensus 326 sdGDaR~aLN~Lems~~m~~tr~g~~~~~~lSidDvke~lq~ 367 (554)
T KOG2028|consen 326 SDGDARAALNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQR 367 (554)
T ss_pred cCchHHHHHHHHHHHHHHHHhhcCCcccceecHHHHHHHHhh
Confidence 887655555444222234444444 346888888888765
No 87
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=4.3e-14 Score=162.89 Aligned_cols=204 Identities=19% Similarity=0.288 Sum_probs=144.9
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC------------
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP------------ 231 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~------------ 231 (704)
+..+.+|+||+|++.+.+.|+..+.. . +.+..+||+||+|||||++|+++|+.+++.
T Consensus 9 KyRP~~f~dviGQe~vv~~L~~~l~~---~--------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~p 77 (618)
T PRK14951 9 KYRPRSFSEMVGQEHVVQALTNALTQ---Q--------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATP 77 (618)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHc---C--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCC
Confidence 56678999999999887777765442 2 456788999999999999999999987641
Q ss_pred -----------------EEEEeCccccchhhhhHHHHHHHHHHHhhC----CCeEEEEccchhhhccCCCCChhHHHHHH
Q 005285 232 -----------------FVFASGAEFTDSEKSGAARINEMFSIARRN----APAFVFVDEIDAIAGRHARKDPRRRATFE 290 (704)
Q Consensus 232 -----------------~v~is~s~~~~~~~~g~~~vr~lF~~Ak~~----~P~ILfIDEiDal~~~~~~~~~e~~~~ln 290 (704)
++.+++. ...+...+|.+.+.+... ...|++|||+|.|.. ...|
T Consensus 78 Cg~C~~C~~i~~g~h~D~~eldaa-----s~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~----------~a~N 142 (618)
T PRK14951 78 CGVCQACRDIDSGRFVDYTELDAA-----SNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN----------TAFN 142 (618)
T ss_pred CCccHHHHHHHcCCCCceeecCcc-----cccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCH----------HHHH
Confidence 2222211 112334567766655432 236999999999842 3578
Q ss_pred HHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccH
Q 005285 291 ALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNF 369 (704)
Q Consensus 291 ~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl 369 (704)
.||..|+.... .+++|++|+.+..+.+.+++ |+ .+++|..++.++..+.++..+....+. ++..+
T Consensus 143 aLLKtLEEPP~-----------~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL 208 (618)
T PRK14951 143 AMLKTLEEPPE-----------YLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQAL 208 (618)
T ss_pred HHHHhcccCCC-----------CeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 89988876432 36778888888888888888 88 689999999999999998877654443 23346
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 005285 370 EELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (704)
Q Consensus 370 ~~La~~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al 412 (704)
..|+..+.| +.+++-+++..+... +...|+.+++.+.+
T Consensus 209 ~~La~~s~G-slR~al~lLdq~ia~----~~~~It~~~V~~~L 246 (618)
T PRK14951 209 RLLARAARG-SMRDALSLTDQAIAF----GSGQLQEAAVRQML 246 (618)
T ss_pred HHHHHHcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 778877665 677777777655544 34568877776554
No 88
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.57 E-value=1.4e-13 Score=140.33 Aligned_cols=207 Identities=17% Similarity=0.249 Sum_probs=132.2
Q ss_pred CCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccccc
Q 005285 166 TKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTD 242 (704)
Q Consensus 166 ~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~~ 242 (704)
...+|++.+.. ..+..+..+..++.. ..+.+++|+||||||||++|++++.++ +.++++++|.++..
T Consensus 10 ~~~~~~~~~~~-~~~~~~~~l~~~~~~---------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~ 79 (226)
T TIGR03420 10 DDPTFDNFYAG-GNAELLAALRQLAAG---------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQ 79 (226)
T ss_pred CchhhcCcCcC-CcHHHHHHHHHHHhc---------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHH
Confidence 44678888732 334444544444332 346789999999999999999999875 57899999888764
Q ss_pred hhhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCC
Q 005285 243 SEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNR 322 (704)
Q Consensus 243 ~~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~ 322 (704)
.. ..++.... .+.+|+|||+|.+... .+....+..++..+.... ..+|+.++..
T Consensus 80 ~~-------~~~~~~~~--~~~lLvIDdi~~l~~~-----~~~~~~L~~~l~~~~~~~------------~~iIits~~~ 133 (226)
T TIGR03420 80 AD-------PEVLEGLE--QADLVCLDDVEAIAGQ-----PEWQEALFHLYNRVREAG------------GRLLIAGRAA 133 (226)
T ss_pred hH-------HHHHhhcc--cCCEEEEeChhhhcCC-----hHHHHHHHHHHHHHHHcC------------CeEEEECCCC
Confidence 32 22333222 2359999999988421 111223334443332211 1244433334
Q ss_pred CCCCc---ccccCCCcc--ceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 005285 323 PDELD---LEFVRPGRI--DRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSV 396 (704)
Q Consensus 323 p~~LD---~aLlRpgRf--d~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~ 396 (704)
+..++ +.+.+ || ..++.+++|+.+++..+++.++....+. ++..+..|+.. .+-+.+++.++++++...+.
T Consensus 134 ~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~~~~ 210 (226)
T TIGR03420 134 PAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDRASL 210 (226)
T ss_pred hHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHH
Confidence 43332 56666 66 4689999999999999998776543332 22236777775 55589999999998886665
Q ss_pred HhCCCcccHHHHHHHH
Q 005285 397 RKGHSKIQQQDIVDVL 412 (704)
Q Consensus 397 r~~~~~It~~dl~~Al 412 (704)
.++ ..|+.+.+.+.+
T Consensus 211 ~~~-~~i~~~~~~~~~ 225 (226)
T TIGR03420 211 AAK-RKITIPFVKEVL 225 (226)
T ss_pred HhC-CCCCHHHHHHHh
Confidence 554 568887776554
No 89
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=4e-14 Score=161.94 Aligned_cols=209 Identities=18% Similarity=0.264 Sum_probs=145.1
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEE--EEeCc---
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFV--FASGA--- 238 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v--~is~s--- 238 (704)
+..+.+|+||+|++.+++.|...+. .. +.+..+||+||||+|||++|+++|+.+++..- .-.|.
T Consensus 9 k~rP~~f~divGq~~v~~~L~~~i~---~~--------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~ 77 (527)
T PRK14969 9 KWRPKSFSELVGQEHVVRALTNALE---QQ--------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCS 77 (527)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHH---cC--------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 4567899999999988877766554 22 45678999999999999999999998865210 00111
Q ss_pred -----------cccch---hhhhHHHHHHHHHHHhh----CCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCc
Q 005285 239 -----------EFTDS---EKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDK 300 (704)
Q Consensus 239 -----------~~~~~---~~~g~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~ 300 (704)
++... ...+...+|.+.+.+.. ....|++|||+|.+.. ...|.||..|+...
T Consensus 78 ~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~----------~a~naLLK~LEepp 147 (527)
T PRK14969 78 ACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK----------SAFNAMLKTLEEPP 147 (527)
T ss_pred HHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH----------HHHHHHHHHHhCCC
Confidence 11111 11234456777666543 2246999999998842 35789999998743
Q ss_pred ccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCC
Q 005285 301 ERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGF 379 (704)
Q Consensus 301 ~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~ 379 (704)
. .+++|++|+.++.+.+.+++ |+ ..++|..++.++..+.+...+....+. ++..+..++..+.|
T Consensus 148 ~-----------~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G- 212 (527)
T PRK14969 148 E-----------HVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG- 212 (527)
T ss_pred C-----------CEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 2 36788888888888888887 88 689999999999998888776544433 22345667776554
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 005285 380 SGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (704)
Q Consensus 380 sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al 412 (704)
+.+++-+++..+... +...|+.+++...+
T Consensus 213 slr~al~lldqai~~----~~~~I~~~~v~~~~ 241 (527)
T PRK14969 213 SMRDALSLLDQAIAY----GGGTVNESEVRAML 241 (527)
T ss_pred CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 677777888776543 45568888877654
No 90
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.57 E-value=5.4e-14 Score=165.29 Aligned_cols=211 Identities=18% Similarity=0.190 Sum_probs=138.7
Q ss_pred ccCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccc
Q 005285 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (704)
Q Consensus 163 ~~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~ 242 (704)
+...+.+|+|++|++.+......+...+... ...++|||||||||||++|+++|+..+.+|+.+++...
T Consensus 20 ek~RP~tldd~vGQe~ii~~~~~L~~~i~~~---------~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-- 88 (725)
T PRK13341 20 DRLRPRTLEEFVGQDHILGEGRLLRRAIKAD---------RVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-- 88 (725)
T ss_pred HhcCCCcHHHhcCcHHHhhhhHHHHHHHhcC---------CCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh--
Confidence 3556789999999998764333333333322 23479999999999999999999999999998887531
Q ss_pred hhhhhHHHHHHHHHHHh-----hCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEE
Q 005285 243 SEKSGAARINEMFSIAR-----RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (704)
Q Consensus 243 ~~~~g~~~vr~lF~~Ak-----~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (704)
+...++..+..+. .....||||||+|.+.. ...+.|+..++.. .+++|
T Consensus 89 ----~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~----------~qQdaLL~~lE~g-------------~IiLI 141 (725)
T PRK13341 89 ----GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK----------AQQDALLPWVENG-------------TITLI 141 (725)
T ss_pred ----hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH----------HHHHHHHHHhcCc-------------eEEEE
Confidence 1122333333331 13457999999999842 1245666655431 26777
Q ss_pred EEcC--CCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhc-------CCCcc-ccccHHHHHHhccCCCHHHHHHH
Q 005285 318 CATN--RPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA-------GKQLA-EDVNFEELVFRTVGFSGADIRNL 387 (704)
Q Consensus 318 aaTN--~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~-------~~~l~-~dvdl~~La~~t~G~sgadL~~L 387 (704)
++|+ ....+++++++ |+ ..+.+++++.+++..+++..+. ...+. ++..+..|+....| ..+.+.++
T Consensus 142 ~aTTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~ 217 (725)
T PRK13341 142 GATTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNA 217 (725)
T ss_pred EecCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHH
Confidence 6653 33568899998 76 5789999999999999998775 11121 22236777777644 46667777
Q ss_pred HHHHHHHHHHhCC--CcccHHHHHHHHHHH
Q 005285 388 VNESGIMSVRKGH--SKIQQQDIVDVLDKQ 415 (704)
Q Consensus 388 v~eA~~~A~r~~~--~~It~~dl~~Al~~~ 415 (704)
++.+...+...+. ..|+.+++.+++.+.
T Consensus 218 Le~a~~~~~~~~~~~i~It~~~~~e~l~~~ 247 (725)
T PRK13341 218 LELAVESTPPDEDGLIDITLAIAEESIQQR 247 (725)
T ss_pred HHHHHHhcccCCCCceeccHHHHHHHHHHh
Confidence 7766543322222 237778888777653
No 91
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.56 E-value=7.2e-14 Score=156.81 Aligned_cols=220 Identities=15% Similarity=0.243 Sum_probs=145.2
Q ss_pred CCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc-----CCCEEEEeCcc
Q 005285 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-----GLPFVFASGAE 239 (704)
Q Consensus 165 ~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~-----g~~~v~is~s~ 239 (704)
.+..+|++.+..+..+........+..+|. .+.+++||||||+|||+|++++|+++ +..++++++.+
T Consensus 99 ~~~~tFdnFv~g~~n~~a~~~~~~~~~~~~--------~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~ 170 (440)
T PRK14088 99 NPDYTFENFVVGPGNSFAYHAALEVAKNPG--------RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_pred CCCCcccccccCCchHHHHHHHHHHHhCcC--------CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 467899998866655555555555555552 14569999999999999999999875 56789999988
Q ss_pred ccchhhhhH--HHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEE
Q 005285 240 FTDSEKSGA--ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (704)
Q Consensus 240 ~~~~~~~g~--~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (704)
|........ ..+.. |.......+.+|+|||++.+.++. .....+..++..+.. . ...+||
T Consensus 171 f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~~-----~~q~elf~~~n~l~~---~---------~k~iIi 232 (440)
T PRK14088 171 FLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGKT-----GVQTELFHTFNELHD---S---------GKQIVI 232 (440)
T ss_pred HHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCcH-----HHHHHHHHHHHHHHH---c---------CCeEEE
Confidence 766532211 12222 332222357899999999886431 111122223333221 1 113555
Q ss_pred EEcCCCCC---CcccccCCCccc--eeeeeCCCCHHHHHHHHHHHhcCC--CccccccHHHHHHhccCCCHHHHHHHHHH
Q 005285 318 CATNRPDE---LDLEFVRPGRID--RRLYIGLPDAKQRVQIFDVHSAGK--QLAEDVNFEELVFRTVGFSGADIRNLVNE 390 (704)
Q Consensus 318 aaTN~p~~---LD~aLlRpgRfd--~~I~v~~Pd~~eR~~Il~~~l~~~--~l~~dvdl~~La~~t~G~sgadL~~Lv~e 390 (704)
++.+.|.. +++.+.+ ||. ..+.+.+||.+.|.+|++..+... .+.++ .+..|+....| +.++|..+++.
T Consensus 233 tsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~e-v~~~Ia~~~~~-~~R~L~g~l~~ 308 (440)
T PRK14088 233 CSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEE-VLNFVAENVDD-NLRRLRGAIIK 308 (440)
T ss_pred ECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHhcccc-CHHHHHHHHHH
Confidence 55566655 4566777 884 478899999999999999887643 34333 36778877655 68889999988
Q ss_pred HHHHHHHhCCCcccHHHHHHHHHHH
Q 005285 391 SGIMSVRKGHSKIQQQDIVDVLDKQ 415 (704)
Q Consensus 391 A~~~A~r~~~~~It~~dl~~Al~~~ 415 (704)
....+...+ ..||.+.+.+++...
T Consensus 309 l~~~~~~~~-~~it~~~a~~~L~~~ 332 (440)
T PRK14088 309 LLVYKETTG-EEVDLKEAILLLKDF 332 (440)
T ss_pred HHHHHHHhC-CCCCHHHHHHHHHHH
Confidence 776665555 459998888888754
No 92
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=9.1e-14 Score=165.22 Aligned_cols=204 Identities=20% Similarity=0.193 Sum_probs=141.9
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC------------
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP------------ 231 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~------------ 231 (704)
+..+.+|+||+|++.+++.|+..+. + .+.+..+||+||+|||||++|+.+|+.+++.
T Consensus 8 KyRP~~f~eiiGqe~v~~~L~~~i~---~--------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~ 76 (824)
T PRK07764 8 RYRPATFAEVIGQEHVTEPLSTALD---S--------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECD 76 (824)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH---h--------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccH
Confidence 4667899999999988877766554 2 2466789999999999999999999988642
Q ss_pred --------------EEEEeCccccchhhhhHHHHHHHHHHH----hhCCCeEEEEccchhhhccCCCCChhHHHHHHHHH
Q 005285 232 --------------FVFASGAEFTDSEKSGAARINEMFSIA----RRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALI 293 (704)
Q Consensus 232 --------------~v~is~s~~~~~~~~g~~~vr~lF~~A----k~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL 293 (704)
|+.+++.. ..+...+|.+-+.+ ......|+||||+|.|. ....|.||
T Consensus 77 sC~~~~~g~~~~~dv~eidaas-----~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt----------~~a~NaLL 141 (824)
T PRK07764 77 SCVALAPGGPGSLDVTEIDAAS-----HGGVDDARELRERAFFAPAESRYKIFIIDEAHMVT----------PQGFNALL 141 (824)
T ss_pred HHHHHHcCCCCCCcEEEecccc-----cCCHHHHHHHHHHHHhchhcCCceEEEEechhhcC----------HHHHHHHH
Confidence 22222211 11233445443332 22445799999999994 24678999
Q ss_pred HHhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccc-cccHHHH
Q 005285 294 AQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAE-DVNFEEL 372 (704)
Q Consensus 294 ~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~-dvdl~~L 372 (704)
+.|+.... .+++|++|+.++.|.+.|++ |+ .++.|..++.++..++|+..+....+.. +..+..|
T Consensus 142 K~LEEpP~-----------~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lL 207 (824)
T PRK07764 142 KIVEEPPE-----------HLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLV 207 (824)
T ss_pred HHHhCCCC-----------CeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 99987543 36788888888999889988 87 6899999999999999988776554432 2335666
Q ss_pred HHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHH
Q 005285 373 VFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDV 411 (704)
Q Consensus 373 a~~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~A 411 (704)
++...| +.+++.++++..... .+...|+.+++...
T Consensus 208 a~~sgG-dlR~Al~eLEKLia~---~~~~~IT~e~V~al 242 (824)
T PRK07764 208 IRAGGG-SVRDSLSVLDQLLAG---AGPEGVTYERAVAL 242 (824)
T ss_pred HHHcCC-CHHHHHHHHHHHHhh---cCCCCCCHHHHHHH
Confidence 666554 667777777664432 23455777766543
No 93
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.56 E-value=1.2e-13 Score=166.24 Aligned_cols=183 Identities=19% Similarity=0.258 Sum_probs=128.4
Q ss_pred CccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc----------CCCEEEEe
Q 005285 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES----------GLPFVFAS 236 (704)
Q Consensus 167 ~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~----------g~~~v~is 236 (704)
.-.+++|+|.++. ++.++..|... .+.+++|+||||||||++|+++|... +.+++.++
T Consensus 175 ~~~~~~~igr~~e---i~~~~~~L~r~---------~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 175 DGNLDPVIGREKE---IERVIQILGRR---------TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred cCCCCCCCCcHHH---HHHHHHHHccc---------ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 3458889988854 44444444333 45689999999999999999999875 47899999
Q ss_pred Cccccch---hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCcc
Q 005285 237 GAEFTDS---EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQA 313 (704)
Q Consensus 237 ~s~~~~~---~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ 313 (704)
.+.+... .+..+.+++.+|+.++...++||||||||.|.+.+...+.. ...+-|...+.. ..
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~--~~a~lLkp~l~r-------------g~ 307 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAI--DAANILKPALAR-------------GE 307 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcc--cHHHHhHHHHhC-------------CC
Confidence 8877632 35667889999999988889999999999998654322211 122333333322 23
Q ss_pred EEEEEEcCCCC-----CCcccccCCCccceeeeeCCCCHHHHHHHHHHHhc------CCCccccccHHHHHHhccCCC
Q 005285 314 VIFICATNRPD-----ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA------GKQLAEDVNFEELVFRTVGFS 380 (704)
Q Consensus 314 ViVIaaTN~p~-----~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~------~~~l~~dvdl~~La~~t~G~s 380 (704)
+.+|++|+..+ ..|+++.+ ||. .|.++.|+.++..+|++.... +..+. +..+..++..+.+|.
T Consensus 308 l~~IgaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~-deal~~i~~ls~~yi 381 (821)
T CHL00095 308 LQCIGATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSIS-DKALEAAAKLSDQYI 381 (821)
T ss_pred cEEEEeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhccC
Confidence 78999998754 47899999 996 589999999999999875432 12222 233556666665553
No 94
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.56 E-value=2.2e-13 Score=152.70 Aligned_cols=228 Identities=14% Similarity=0.182 Sum_probs=139.0
Q ss_pred CCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCcccc
Q 005285 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFT 241 (704)
Q Consensus 165 ~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~ 241 (704)
.++.||++.+-.+..+.....+..+.+++. ..+.....+++||||||+|||+|++++++++ +..++++++.+|.
T Consensus 105 ~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~---~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~ 181 (445)
T PRK12422 105 DPLMTFANFLVTPENDLPHRILQEFTKVSE---QGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFT 181 (445)
T ss_pred CccccccceeeCCcHHHHHHHHHHHHhccc---cccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHH
Confidence 466899998855554433344444433331 0111234679999999999999999999865 7889999988776
Q ss_pred chhhhhHH-HHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEc
Q 005285 242 DSEKSGAA-RINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (704)
Q Consensus 242 ~~~~~g~~-~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (704)
........ .-...|.... ..+.+|+|||++.+.++. ....+...++|.+.. .+ ..+|+.++
T Consensus 182 ~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~-~~qeelf~l~N~l~~--~~--------------k~IIlts~ 243 (445)
T PRK12422 182 EHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKG-ATQEEFFHTFNSLHT--EG--------------KLIVISST 243 (445)
T ss_pred HHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCCh-hhHHHHHHHHHHHHH--CC--------------CcEEEecC
Confidence 54211110 0112233322 346799999999985431 111222223333321 11 12444444
Q ss_pred CCCC---CCcccccCCCccc--eeeeeCCCCHHHHHHHHHHHhcCCCccc-cccHHHHHHhccCCCHHHHHHHHHHHHHH
Q 005285 321 NRPD---ELDLEFVRPGRID--RRLYIGLPDAKQRVQIFDVHSAGKQLAE-DVNFEELVFRTVGFSGADIRNLVNESGIM 394 (704)
Q Consensus 321 N~p~---~LD~aLlRpgRfd--~~I~v~~Pd~~eR~~Il~~~l~~~~l~~-dvdl~~La~~t~G~sgadL~~Lv~eA~~~ 394 (704)
+.|. .+++.|.+ ||. ..+.+.+|+.++|.+|++..+....+.- +..+..|+....+ +.+.|.+.++..+..
T Consensus 244 ~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~-dir~L~g~l~~l~~~ 320 (445)
T PRK12422 244 CAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSS-NVKSLLHALTLLAKR 320 (445)
T ss_pred CCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence 4443 46788888 995 6889999999999999998876654332 2234557765443 567777777776532
Q ss_pred H-HHh-CCCcccHHHHHHHHHHHH
Q 005285 395 S-VRK-GHSKIQQQDIVDVLDKQL 416 (704)
Q Consensus 395 A-~r~-~~~~It~~dl~~Al~~~~ 416 (704)
. ... ....|+.+.+.+++...+
T Consensus 321 ~a~~~~~~~~i~~~~~~~~l~~~~ 344 (445)
T PRK12422 321 VAYKKLSHQLLYVDDIKALLHDVL 344 (445)
T ss_pred HHHHHhhCCCCCHHHHHHHHHHhh
Confidence 2 111 234689999988887643
No 95
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=1.1e-13 Score=159.03 Aligned_cols=205 Identities=21% Similarity=0.241 Sum_probs=143.2
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC------------
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP------------ 231 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~------------ 231 (704)
+..+.+|+||+|++.+++.|+..+. .. +.|..+||+||+|||||++|+++|+.+++.
T Consensus 6 kyRP~~f~eivGq~~i~~~L~~~i~---~~--------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 74 (584)
T PRK14952 6 KYRPATFAEVVGQEHVTEPLSSALD---AG--------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCE 74 (584)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHH---cC--------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccH
Confidence 5677899999999988877776544 22 467788999999999999999999987642
Q ss_pred --------------EEEEeCccccchhhhhHHHHHHHHHHHhh----CCCeEEEEccchhhhccCCCCChhHHHHHHHHH
Q 005285 232 --------------FVFASGAEFTDSEKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALI 293 (704)
Q Consensus 232 --------------~v~is~s~~~~~~~~g~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL 293 (704)
++.++++. ..+...+|.+-+.+.. ....|++|||+|.+.. ...|.||
T Consensus 75 ~C~~i~~~~~~~~dvieidaas-----~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~----------~A~NALL 139 (584)
T PRK14952 75 SCVALAPNGPGSIDVVELDAAS-----HGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT----------AGFNALL 139 (584)
T ss_pred HHHHhhcccCCCceEEEecccc-----ccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH----------HHHHHHH
Confidence 22222111 1133445555444432 2346999999998842 3678999
Q ss_pred HHhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHH
Q 005285 294 AQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEEL 372 (704)
Q Consensus 294 ~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~L 372 (704)
..|+.... .+++|++|+.++.|.+.+++ |+ .++.|..++.++..+.+...+...... ++..+..+
T Consensus 140 K~LEEpp~-----------~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~I 205 (584)
T PRK14952 140 KIVEEPPE-----------HLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLV 205 (584)
T ss_pred HHHhcCCC-----------CeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 99987443 37888888888999999988 86 689999999999998888877654432 22334556
Q ss_pred HHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 005285 373 VFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (704)
Q Consensus 373 a~~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al 412 (704)
+.. .|-+.+++-++++.+...+ +...|+.+++...+
T Consensus 206 a~~-s~GdlR~aln~Ldql~~~~---~~~~It~~~v~~ll 241 (584)
T PRK14952 206 IRA-GGGSPRDTLSVLDQLLAGA---ADTHVTYQRALGLL 241 (584)
T ss_pred HHH-cCCCHHHHHHHHHHHHhcc---CCCCcCHHHHHHHH
Confidence 655 4456777778887765432 24567877766553
No 96
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.56 E-value=9.6e-14 Score=151.33 Aligned_cols=205 Identities=22% Similarity=0.327 Sum_probs=144.6
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC------------
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP------------ 231 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~------------ 231 (704)
+..+.+|+|++|++++++.|...+. +. +.|..+|||||||+|||++|+++|+.+..+
T Consensus 7 ~~rp~~~~~iig~~~~~~~l~~~~~---~~--------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~ 75 (355)
T TIGR02397 7 KYRPQTFEDVIGQEHIVQTLKNAIK---NG--------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECE 75 (355)
T ss_pred HhCCCcHhhccCcHHHHHHHHHHHH---cC--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 4567899999999988877776553 22 456789999999999999999999886432
Q ss_pred ------------EEEEeCccccchhhhhHHHHHHHHHHHhhC----CCeEEEEccchhhhccCCCCChhHHHHHHHHHHH
Q 005285 232 ------------FVFASGAEFTDSEKSGAARINEMFSIARRN----APAFVFVDEIDAIAGRHARKDPRRRATFEALIAQ 295 (704)
Q Consensus 232 ------------~v~is~s~~~~~~~~g~~~vr~lF~~Ak~~----~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ 295 (704)
++.+++.. ..+...++.+++.+... ...||+|||+|.+.. ...+.|+..
T Consensus 76 ~c~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~----------~~~~~Ll~~ 140 (355)
T TIGR02397 76 SCKEINSGSSLDVIEIDAAS-----NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK----------SAFNALLKT 140 (355)
T ss_pred HHHHHhcCCCCCEEEeeccc-----cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH----------HHHHHHHHH
Confidence 22232221 12233466777766432 235999999998842 356888888
Q ss_pred hcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHH
Q 005285 296 LDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVF 374 (704)
Q Consensus 296 ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~ 374 (704)
++.... .+++|++||.++.+.+++++ |+ ..+++++|+.++..++++.++...... ++..+..++.
T Consensus 141 le~~~~-----------~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~ 206 (355)
T TIGR02397 141 LEEPPE-----------HVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIAR 206 (355)
T ss_pred HhCCcc-----------ceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 866332 36777888888888889988 88 578999999999999999877655432 2234566777
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHH
Q 005285 375 RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLD 413 (704)
Q Consensus 375 ~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al~ 413 (704)
.+.| +.+.+.+.++.+..++ ...|+.+++.+++.
T Consensus 207 ~~~g-~~~~a~~~lekl~~~~----~~~it~~~v~~~~~ 240 (355)
T TIGR02397 207 AADG-SLRDALSLLDQLISFG----NGNITYEDVNELLG 240 (355)
T ss_pred HcCC-ChHHHHHHHHHHHhhc----CCCCCHHHHHHHhC
Confidence 6554 6666767776666543 23599999877664
No 97
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.55 E-value=8.4e-14 Score=144.24 Aligned_cols=191 Identities=16% Similarity=0.164 Sum_probs=128.3
Q ss_pred ccCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC------EEEEe
Q 005285 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP------FVFAS 236 (704)
Q Consensus 163 ~~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~------~v~is 236 (704)
+++.+.+|+|++|++.+.+.|...+.- ++ -..+|||||||||||+.|+++|++++.| +...+
T Consensus 28 eKYrPkt~de~~gQe~vV~~L~~a~~~-~~-----------lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ln 95 (346)
T KOG0989|consen 28 EKYRPKTFDELAGQEHVVQVLKNALLR-RI-----------LPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELN 95 (346)
T ss_pred HHhCCCcHHhhcchHHHHHHHHHHHhh-cC-----------CceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhc
Confidence 577889999999999988887766554 22 2379999999999999999999998763 23334
Q ss_pred CccccchhhhhHHHHHHHHHHHhhC---------CC-eEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcc
Q 005285 237 GAEFTDSEKSGAARINEMFSIARRN---------AP-AFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGID 306 (704)
Q Consensus 237 ~s~~~~~~~~g~~~vr~lF~~Ak~~---------~P-~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~ 306 (704)
.++..... .....+ .-|.+.... .| -|++|||+|.+.. ...+.|...|+.+...
T Consensus 96 aSderGis-vvr~Ki-k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts----------daq~aLrr~mE~~s~~---- 159 (346)
T KOG0989|consen 96 ASDERGIS-VVREKI-KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTS----------DAQAALRRTMEDFSRT---- 159 (346)
T ss_pred cccccccc-chhhhh-cCHHHHhhccccccCCCCCcceEEEEechhhhhH----------HHHHHHHHHHhccccc----
Confidence 44433221 111111 113222211 12 6999999999953 3678899999886543
Q ss_pred ccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccc-cHHHHHHhccCCCHHHHH
Q 005285 307 RFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDV-NFEELVFRTVGFSGADIR 385 (704)
Q Consensus 307 ~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dv-dl~~La~~t~G~sgadL~ 385 (704)
+.+|..||..+.|...+.+ |+. .+.|+....+...+.|+..+....+.-|. .+..++..+.| +-++-.
T Consensus 160 -------trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G-dLR~Ai 228 (346)
T KOG0989|consen 160 -------TRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG-DLRRAI 228 (346)
T ss_pred -------eEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-cHHHHH
Confidence 6888899999999999998 884 57788777777777777766655554332 36677776555 233333
Q ss_pred HHHHHHH
Q 005285 386 NLVNESG 392 (704)
Q Consensus 386 ~Lv~eA~ 392 (704)
..++.++
T Consensus 229 t~Lqsls 235 (346)
T KOG0989|consen 229 TTLQSLS 235 (346)
T ss_pred HHHHHhh
Confidence 3444433
No 98
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=1.1e-13 Score=158.62 Aligned_cols=204 Identities=20% Similarity=0.235 Sum_probs=141.2
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC------------
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP------------ 231 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~------------ 231 (704)
+..+.+|+||+|++.+++.|+..+.. . +.+..+||+||||||||++|+++|+.++..
T Consensus 9 KyRP~sf~dIiGQe~v~~~L~~ai~~---~--------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~ 77 (624)
T PRK14959 9 RYRPQTFAEVAGQETVKAILSRAAQE---N--------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCE 77 (624)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHc---C--------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccH
Confidence 56778999999999988877766542 1 346789999999999999999999988652
Q ss_pred ------------EEEEeCccccchhhhhHHHHHHHHHHHh----hCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHH
Q 005285 232 ------------FVFASGAEFTDSEKSGAARINEMFSIAR----RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQ 295 (704)
Q Consensus 232 ------------~v~is~s~~~~~~~~g~~~vr~lF~~Ak----~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ 295 (704)
++.+++.. ..+...++.+.+.+. .....||||||+|.+.. ..+|.|+..
T Consensus 78 sC~~i~~g~hpDv~eId~a~-----~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~----------~a~naLLk~ 142 (624)
T PRK14959 78 QCRKVTQGMHVDVVEIDGAS-----NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTR----------EAFNALLKT 142 (624)
T ss_pred HHHHHhcCCCCceEEEeccc-----ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCH----------HHHHHHHHH
Confidence 33333221 112233444332222 23357999999999942 356889988
Q ss_pred hcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHH
Q 005285 296 LDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVF 374 (704)
Q Consensus 296 ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~ 374 (704)
|+.... .+++|++||.+..+.+.+++ |+ .++.|+.++.++..++|+..+....+. ++..+..|+.
T Consensus 143 LEEP~~-----------~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~ 208 (624)
T PRK14959 143 LEEPPA-----------RVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIAR 208 (624)
T ss_pred hhccCC-----------CEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 876332 36888888888888888888 88 578999999999999998766554432 2334667777
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 005285 375 RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (704)
Q Consensus 375 ~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al 412 (704)
.+.| +.+++-+++..+. ..+...|+.+++.+++
T Consensus 209 ~s~G-dlR~Al~lLeqll----~~g~~~It~d~V~~~l 241 (624)
T PRK14959 209 RAAG-SVRDSMSLLGQVL----ALGESRLTIDGARGVL 241 (624)
T ss_pred HcCC-CHHHHHHHHHHHH----HhcCCCcCHHHHHHHh
Confidence 6654 4455555555432 2345579998887766
No 99
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.55 E-value=1.9e-13 Score=158.08 Aligned_cols=188 Identities=16% Similarity=0.231 Sum_probs=124.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHc-------C---CCEEEEeCccccchhh------------------hhHHHHHHHHH
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKES-------G---LPFVFASGAEFTDSEK------------------SGAARINEMFS 256 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e~-------g---~~~v~is~s~~~~~~~------------------~g~~~vr~lF~ 256 (704)
..++|+|+||||||++++.+.+++ + +.+++|+|..+..... .....+..+|.
T Consensus 782 nvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~ 861 (1164)
T PTZ00112 782 QILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFN 861 (1164)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHh
Confidence 345699999999999999997755 2 5678999976543211 11234556666
Q ss_pred HHh--hCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCC---CCCCccccc
Q 005285 257 IAR--RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNR---PDELDLEFV 331 (704)
Q Consensus 257 ~Ak--~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~---p~~LD~aLl 331 (704)
... ....+||+|||||.|..+ ....+..|+..... . ...++||+++|. ++.|++.+.
T Consensus 862 ~L~k~~r~v~IIILDEID~L~kK-------~QDVLYnLFR~~~~-s----------~SKLiLIGISNdlDLperLdPRLR 923 (1164)
T PTZ00112 862 QNKKDNRNVSILIIDEIDYLITK-------TQKVLFTLFDWPTK-I----------NSKLVLIAISNTMDLPERLIPRCR 923 (1164)
T ss_pred hhhcccccceEEEeehHhhhCcc-------HHHHHHHHHHHhhc-c----------CCeEEEEEecCchhcchhhhhhhh
Confidence 552 234579999999999642 13345555554321 1 124889999986 566788887
Q ss_pred CCCccce-eeeeCCCCHHHHHHHHHHHhcCCC-ccccccHHHHHHhccCCCHHHHHHH---HHHHHHHHHHhCCCcccHH
Q 005285 332 RPGRIDR-RLYIGLPDAKQRVQIFDVHSAGKQ-LAEDVNFEELVFRTVGFSGADIRNL---VNESGIMSVRKGHSKIQQQ 406 (704)
Q Consensus 332 RpgRfd~-~I~v~~Pd~~eR~~Il~~~l~~~~-l~~dvdl~~La~~t~G~sgadL~~L---v~eA~~~A~r~~~~~It~~ 406 (704)
+ ||.. .|.|++++.+++.+||+..+.... .-.+..+..+|+..+.. .+|++.. |+.|+.. ++...|+.+
T Consensus 924 S--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~-SGDARKALDILRrAgEi---kegskVT~e 997 (1164)
T PTZ00112 924 S--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANV-SGDIRKALQICRKAFEN---KRGQKIVPR 997 (1164)
T ss_pred h--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhc-CCHHHHHHHHHHHHHhh---cCCCccCHH
Confidence 7 7753 588999999999999998876432 22233356666644433 3466644 4555443 344579999
Q ss_pred HHHHHHHHHH
Q 005285 407 DIVDVLDKQL 416 (704)
Q Consensus 407 dl~~Al~~~~ 416 (704)
|+.+|++++.
T Consensus 998 HVrkAleeiE 1007 (1164)
T PTZ00112 998 DITEATNQLF 1007 (1164)
T ss_pred HHHHHHHHHH
Confidence 9999987653
No 100
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=2.5e-14 Score=161.85 Aligned_cols=171 Identities=25% Similarity=0.288 Sum_probs=128.4
Q ss_pred eecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccch-h-------
Q 005285 173 VVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-E------- 244 (704)
Q Consensus 173 VvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~-~------- 244 (704)
--|.+++|+.+-|.+...+... . ....-++|+||||+|||+|+++||+.+|.+|+.++..-..+. .
T Consensus 325 HYGLekVKeRIlEyLAV~~l~~---~---~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRT 398 (782)
T COG0466 325 HYGLEKVKERILEYLAVQKLTK---K---LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRT 398 (782)
T ss_pred ccCchhHHHHHHHHHHHHHHhc---c---CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccccc
Confidence 3577888888777665433221 1 112357899999999999999999999999999997765432 1
Q ss_pred --hhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccc----cCccEEEEE
Q 005285 245 --KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFS----LRQAVIFIC 318 (704)
Q Consensus 245 --~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~----~~~~ViVIa 318 (704)
|.-..++-.-..+|...+| +++|||||.++.. ..+++. .+||+.||..+++.-.+++- .-+.|++|+
T Consensus 399 YIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss-~rGDPa-----SALLEVLDPEQN~~F~DhYLev~yDLS~VmFia 471 (782)
T COG0466 399 YIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSS-FRGDPA-----SALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIA 471 (782)
T ss_pred ccccCChHHHHHHHHhCCcCC-eEEeechhhccCC-CCCChH-----HHHHhhcCHhhcCchhhccccCccchhheEEEe
Confidence 2223345566778888887 7888999999643 334433 68999999877665444321 235799999
Q ss_pred EcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhc
Q 005285 319 ATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA 359 (704)
Q Consensus 319 aTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~ 359 (704)
|+|..+.++.+|+. |+ ..|+++-++.++..+|-+.|+-
T Consensus 472 TANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 472 TANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred ecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhcc
Confidence 99999999999999 99 5899999999999999998863
No 101
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.54 E-value=5.6e-14 Score=169.03 Aligned_cols=165 Identities=16% Similarity=0.257 Sum_probs=122.7
Q ss_pred CCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc----------CCCEEEE
Q 005285 166 TKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES----------GLPFVFA 235 (704)
Q Consensus 166 ~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~----------g~~~v~i 235 (704)
.+-.+++|+|.+. +++.++..|... ...+++|+||||||||++|+++|..+ +.+++.+
T Consensus 173 r~~~l~~vigr~~---ei~~~i~iL~r~---------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l 240 (857)
T PRK10865 173 EQGKLDPVIGRDE---EIRRTIQVLQRR---------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 240 (857)
T ss_pred hcCCCCcCCCCHH---HHHHHHHHHhcC---------CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEE
Confidence 4567899999985 466666655443 23579999999999999999999987 7889999
Q ss_pred eCccccch---hhhhHHHHHHHHHHHhh-CCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccC
Q 005285 236 SGAEFTDS---EKSGAARINEMFSIARR-NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLR 311 (704)
Q Consensus 236 s~s~~~~~---~~~g~~~vr~lF~~Ak~-~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~ 311 (704)
+.+.+... .+....+++.+|+.+.. ..|+||||||+|.|.+.+.+.+. ....+-|...+. +
T Consensus 241 ~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~--~d~~~~lkp~l~-------------~ 305 (857)
T PRK10865 241 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGA--MDAGNMLKPALA-------------R 305 (857)
T ss_pred ehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccc--hhHHHHhcchhh-------------c
Confidence 88887532 35667789999988644 56899999999999765322211 112233332222 1
Q ss_pred ccEEEEEEcCCCC-----CCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcC
Q 005285 312 QAVIFICATNRPD-----ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAG 360 (704)
Q Consensus 312 ~~ViVIaaTN~p~-----~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~ 360 (704)
..+.+|+||+..+ .+|+|+.| ||+ .|.++.|+.+++..|++.+...
T Consensus 306 g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~ 356 (857)
T PRK10865 306 GELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKER 356 (857)
T ss_pred CCCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhh
Confidence 2389999998876 48999999 997 5889999999999999876543
No 102
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=2.1e-13 Score=155.33 Aligned_cols=204 Identities=19% Similarity=0.277 Sum_probs=140.9
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCC-------------
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGL------------- 230 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~------------- 230 (704)
+..+.+|+||+|++.+.+.|...+. .. +.+..+||+||||||||++|+++|+.++.
T Consensus 9 KyRP~~f~diiGq~~~v~~L~~~i~---~~--------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~ 77 (546)
T PRK14957 9 KYRPQSFAEVAGQQHALNSLVHALE---TQ--------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCE 77 (546)
T ss_pred HHCcCcHHHhcCcHHHHHHHHHHHH---cC--------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccH
Confidence 4567899999999988877665543 22 45678999999999999999999997754
Q ss_pred -----------CEEEEeCccccchhhhhHHHHHHHHHHHhh----CCCeEEEEccchhhhccCCCCChhHHHHHHHHHHH
Q 005285 231 -----------PFVFASGAEFTDSEKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQ 295 (704)
Q Consensus 231 -----------~~v~is~s~~~~~~~~g~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ 295 (704)
.++.+++. ...+...++.+.+.+.. ....|+||||+|.+. ....|.||..
T Consensus 78 sC~~i~~~~~~dlieidaa-----s~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls----------~~a~naLLK~ 142 (546)
T PRK14957 78 NCVAINNNSFIDLIEIDAA-----SRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS----------KQSFNALLKT 142 (546)
T ss_pred HHHHHhcCCCCceEEeecc-----cccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc----------HHHHHHHHHH
Confidence 12222221 11223345555544432 235699999999884 2367889998
Q ss_pred hcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHH
Q 005285 296 LDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVF 374 (704)
Q Consensus 296 ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~ 374 (704)
|+.... .+++|++|+.+..+.+.+++ |+ ..++|..++.++..+.++..+....+. .+..+..++.
T Consensus 143 LEepp~-----------~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~ 208 (546)
T PRK14957 143 LEEPPE-----------YVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAY 208 (546)
T ss_pred HhcCCC-----------CceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 886433 25777777778888888888 88 789999999999988888766554432 2334566776
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 005285 375 RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (704)
Q Consensus 375 ~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al 412 (704)
.+. -+.+++-+++..+.... + ..|+.+++.+++
T Consensus 209 ~s~-GdlR~alnlLek~i~~~---~-~~It~~~V~~~l 241 (546)
T PRK14957 209 HAK-GSLRDALSLLDQAISFC---G-GELKQAQIKQML 241 (546)
T ss_pred HcC-CCHHHHHHHHHHHHHhc---c-CCCCHHHHHHHH
Confidence 654 46677777777665442 2 468888777654
No 103
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.53 E-value=1.9e-13 Score=151.58 Aligned_cols=187 Identities=25% Similarity=0.299 Sum_probs=118.0
Q ss_pred ccccc-eecCcccHHHHHHHHH-HhCCchhhhh--cCC-ccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccc
Q 005285 168 SMYKE-VVLGGDVWDLLDELMI-YMGNPMQYYE--RGV-QFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (704)
Q Consensus 168 ~~f~d-VvG~~~~k~~L~elv~-~l~~p~~~~~--~g~-~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~ 242 (704)
..+++ |+|++++|+.|...+. ..+.-..... ... ....++||+||||||||++|+++|..++.||+.++++.+.+
T Consensus 67 ~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~ 146 (412)
T PRK05342 67 AHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTE 146 (412)
T ss_pred HHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhccc
Confidence 34543 8999999998876552 1111100000 011 23578999999999999999999999999999999998876
Q ss_pred hh--hhh-HHHHHHHHHHH----hhCCCeEEEEccchhhhccCCC----CChhHHHHHHHHHHHhcCCcccC--Cccccc
Q 005285 243 SE--KSG-AARINEMFSIA----RRNAPAFVFVDEIDAIAGRHAR----KDPRRRATFEALIAQLDGDKERT--GIDRFS 309 (704)
Q Consensus 243 ~~--~~g-~~~vr~lF~~A----k~~~P~ILfIDEiDal~~~~~~----~~~e~~~~ln~LL~~ld~~~~~~--~~~~~~ 309 (704)
.. +.. ...+..++..+ ....++||||||||.+..++.+ .+-....+++.||..|++..... ...+..
T Consensus 147 ~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~ 226 (412)
T PRK05342 147 AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKH 226 (412)
T ss_pred CCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCc
Confidence 42 322 22344444322 2346799999999999754211 12223457889999998753211 111222
Q ss_pred cCccEEEEEEcCCCCC----------------------------------------------------CcccccCCCccc
Q 005285 310 LRQAVIFICATNRPDE----------------------------------------------------LDLEFVRPGRID 337 (704)
Q Consensus 310 ~~~~ViVIaaTN~p~~----------------------------------------------------LD~aLlRpgRfd 337 (704)
.....++|.|+|-... +.|+|+ ||+|
T Consensus 227 ~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld 304 (412)
T PRK05342 227 PQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLP 304 (412)
T ss_pred CCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCC
Confidence 2234555555554100 123333 6999
Q ss_pred eeeeeCCCCHHHHHHHHHH
Q 005285 338 RRLYIGLPDAKQRVQIFDV 356 (704)
Q Consensus 338 ~~I~v~~Pd~~eR~~Il~~ 356 (704)
..+.|...+.+...+|+..
T Consensus 305 ~iv~f~~L~~~~L~~Il~~ 323 (412)
T PRK05342 305 VVATLEELDEEALVRILTE 323 (412)
T ss_pred eeeecCCCCHHHHHHHHHH
Confidence 9999999999999999873
No 104
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=2e-13 Score=158.63 Aligned_cols=209 Identities=18% Similarity=0.319 Sum_probs=146.2
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEE---EeCc--
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF---ASGA-- 238 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~---is~s-- 238 (704)
+.++.+|+||+|++.+++.|+..+. .. +.+..+||+||||||||++|+++|+.+.++--. ..|.
T Consensus 11 KyRP~~f~dIiGQe~~v~~L~~aI~---~~--------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C 79 (725)
T PRK07133 11 KYRPKTFDDIVGQDHIVQTLKNIIK---SN--------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQEC 79 (725)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH---cC--------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHH
Confidence 5677899999999988877776554 22 467889999999999999999999987553110 0111
Q ss_pred --------cccch---hhhhHHHHHHHHHHHhh----CCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccC
Q 005285 239 --------EFTDS---EKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERT 303 (704)
Q Consensus 239 --------~~~~~---~~~g~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~ 303 (704)
++... ...+...+|.+.+.+.. ....|++|||+|.+.. ..++.||..|+....
T Consensus 80 ~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~----------~A~NALLKtLEEPP~-- 147 (725)
T PRK07133 80 IENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK----------SAFNALLKTLEEPPK-- 147 (725)
T ss_pred HHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH----------HHHHHHHHHhhcCCC--
Confidence 11111 11234457777776654 2347999999998842 367899999887432
Q ss_pred CccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccc-cccHHHHHHhccCCCHH
Q 005285 304 GIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAE-DVNFEELVFRTVGFSGA 382 (704)
Q Consensus 304 ~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~-dvdl~~La~~t~G~sga 382 (704)
.+++|++|+.++.|.+.+++ |+ ..+.|.+|+.++..++++..+....+.. +..+..++..+.| +.+
T Consensus 148 ---------~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR 214 (725)
T PRK07133 148 ---------HVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLR 214 (725)
T ss_pred ---------ceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 36888888889999999998 88 4799999999999999887665544332 2236667776554 567
Q ss_pred HHHHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 005285 383 DIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (704)
Q Consensus 383 dL~~Lv~eA~~~A~r~~~~~It~~dl~~Al 412 (704)
++.+++..+..++ ...|+.+++.+.+
T Consensus 215 ~AlslLekl~~y~----~~~It~e~V~ell 240 (725)
T PRK07133 215 DALSIAEQVSIFG----NNKITLKNVEELF 240 (725)
T ss_pred HHHHHHHHHHHhc----cCCCCHHHHHHHH
Confidence 7777777655442 2348888876654
No 105
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.52 E-value=2.9e-13 Score=160.92 Aligned_cols=171 Identities=20% Similarity=0.265 Sum_probs=119.5
Q ss_pred ceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccch-h------
Q 005285 172 EVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-E------ 244 (704)
Q Consensus 172 dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~-~------ 244 (704)
|..|.+++|+.+.+++...+.. +......++|+||||+|||++++++|+.++.+|+.++++...+. .
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRV------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhc------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchh
Confidence 3678888888887766643322 11123469999999999999999999999999999987765432 1
Q ss_pred ---hhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccc----ccCccEEEE
Q 005285 245 ---KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRF----SLRQAVIFI 317 (704)
Q Consensus 245 ---~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~----~~~~~ViVI 317 (704)
+....++...+..+....| ||||||+|.+.... .+ .....|+..+|...+..-.+.+ ....+|++|
T Consensus 397 ~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~-~g-----~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i 469 (784)
T PRK10787 397 TYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDM-RG-----DPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFV 469 (784)
T ss_pred ccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhccccc-CC-----CHHHHHHHHhccccEEEEecccccccccCCceEEE
Confidence 1112234444555554444 79999999996432 11 1356788888753322211111 123569999
Q ss_pred EEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhc
Q 005285 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA 359 (704)
Q Consensus 318 aaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~ 359 (704)
+|+|.. .|+++|++ ||+ .|.+..++.++..+|.+.|+.
T Consensus 470 ~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 470 ATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred EcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhh
Confidence 999987 59999999 995 799999999999999998874
No 106
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.52 E-value=5.1e-13 Score=138.04 Aligned_cols=209 Identities=14% Similarity=0.136 Sum_probs=128.4
Q ss_pred CCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCcccc
Q 005285 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFT 241 (704)
Q Consensus 165 ~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~ 241 (704)
.+..+|++.+-. .-...+..+..+...+ .+..++||||||||||+|++++|+++ |..+.+++..++.
T Consensus 16 ~~~~~fd~f~~~-~n~~a~~~l~~~~~~~---------~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~ 85 (235)
T PRK08084 16 PDDETFASFYPG-DNDSLLAALQNALRQE---------HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRA 85 (235)
T ss_pred CCcCCccccccC-ccHHHHHHHHHHHhCC---------CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHh
Confidence 445689998744 3333444443433333 23579999999999999999999865 4556666665532
Q ss_pred chhhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcC
Q 005285 242 DSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATN 321 (704)
Q Consensus 242 ~~~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN 321 (704)
... ..+.+.... ..+|+|||+|.+.++ ......+..++..+-... . .-+++.+++
T Consensus 86 ~~~-------~~~~~~~~~--~dlliiDdi~~~~~~-----~~~~~~lf~l~n~~~e~g-~----------~~li~ts~~ 140 (235)
T PRK08084 86 WFV-------PEVLEGMEQ--LSLVCIDNIECIAGD-----ELWEMAIFDLYNRILESG-R----------TRLLITGDR 140 (235)
T ss_pred hhh-------HHHHHHhhh--CCEEEEeChhhhcCC-----HHHHHHHHHHHHHHHHcC-C----------CeEEEeCCC
Confidence 211 122222222 258999999998532 223333444444432210 0 024444555
Q ss_pred CCCC---CcccccCCCccc--eeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 005285 322 RPDE---LDLEFVRPGRID--RRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMS 395 (704)
Q Consensus 322 ~p~~---LD~aLlRpgRfd--~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A 395 (704)
.|.. +.+.|++ ||. ..+.+..|+.+++.++++.+.....+. ++.-+..|+.+..| +.+.+.++++.....+
T Consensus 141 ~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~ 217 (235)
T PRK08084 141 PPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLDRAS 217 (235)
T ss_pred ChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHHHHH
Confidence 5555 5788888 985 689999999999999998866544332 22235677777655 6788888888754333
Q ss_pred HHhCCCcccHHHHHHHH
Q 005285 396 VRKGHSKIQQQDIVDVL 412 (704)
Q Consensus 396 ~r~~~~~It~~dl~~Al 412 (704)
..+ ...||.+.+.+++
T Consensus 218 l~~-~~~it~~~~k~~l 233 (235)
T PRK08084 218 ITA-QRKLTIPFVKEIL 233 (235)
T ss_pred Hhc-CCCCCHHHHHHHH
Confidence 333 3558888776654
No 107
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=2.8e-13 Score=156.45 Aligned_cols=211 Identities=18% Similarity=0.239 Sum_probs=149.2
Q ss_pred ccCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEe------
Q 005285 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFAS------ 236 (704)
Q Consensus 163 ~~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is------ 236 (704)
.+..+.+|+||+|++.+++.|...+. . .+.|..+||+||+|+|||++|+++|+.+++..-..+
T Consensus 16 ~KyRP~~f~dliGq~~~v~~L~~~~~---~--------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~ 84 (598)
T PRK09111 16 RKYRPQTFDDLIGQEAMVRTLTNAFE---T--------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID 84 (598)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHH---c--------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc
Confidence 35677899999999988877776544 2 246789999999999999999999998765321111
Q ss_pred -Cc--------------cccch---hhhhHHHHHHHHHHHhhC----CCeEEEEccchhhhccCCCCChhHHHHHHHHHH
Q 005285 237 -GA--------------EFTDS---EKSGAARINEMFSIARRN----APAFVFVDEIDAIAGRHARKDPRRRATFEALIA 294 (704)
Q Consensus 237 -~s--------------~~~~~---~~~g~~~vr~lF~~Ak~~----~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~ 294 (704)
|. ++... ...+...+|.+.+.+... ...|++|||+|.+. ....|.|+.
T Consensus 85 ~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls----------~~a~naLLK 154 (598)
T PRK09111 85 LCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS----------TAAFNALLK 154 (598)
T ss_pred cCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC----------HHHHHHHHH
Confidence 11 11111 112345577777766532 25799999999984 235788998
Q ss_pred HhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccc-cccHHHHH
Q 005285 295 QLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAE-DVNFEELV 373 (704)
Q Consensus 295 ~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~-dvdl~~La 373 (704)
.|+.... .+++|++|+.++.+.+.+++ |+ ..+.|..|+.++..+.++..+......- +..+..|+
T Consensus 155 tLEePp~-----------~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa 220 (598)
T PRK09111 155 TLEEPPP-----------HVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIA 220 (598)
T ss_pred HHHhCCC-----------CeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 8876443 36777778888888888887 88 5799999999999999988776554332 23456677
Q ss_pred HhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHH
Q 005285 374 FRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLD 413 (704)
Q Consensus 374 ~~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al~ 413 (704)
..+.| +.+++.+++..+... +...|+.+++.+.+.
T Consensus 221 ~~a~G-dlr~al~~Ldkli~~----g~g~It~e~V~~llg 255 (598)
T PRK09111 221 RAAEG-SVRDGLSLLDQAIAH----GAGEVTAEAVRDMLG 255 (598)
T ss_pred HHcCC-CHHHHHHHHHHHHhh----cCCCcCHHHHHHHhC
Confidence 76655 778888888766544 234699988876653
No 108
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=2.9e-13 Score=148.73 Aligned_cols=211 Identities=18% Similarity=0.270 Sum_probs=140.4
Q ss_pred ccCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCcc---
Q 005285 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAE--- 239 (704)
Q Consensus 163 ~~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~--- 239 (704)
++..+.+|+||+|++.+.+.+...+. +. +.|.++|||||||+|||++|+++|+.++.+.....+..
T Consensus 9 ~k~rP~~~~~iig~~~~~~~l~~~i~---~~--------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~ 77 (367)
T PRK14970 9 RKYRPQTFDDVVGQSHITNTLLNAIE---NN--------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSF 77 (367)
T ss_pred HHHCCCcHHhcCCcHHHHHHHHHHHH---cC--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCc
Confidence 35677899999999987766555443 32 46789999999999999999999998754321111111
Q ss_pred ----ccchhhhhHHHHHHHHHHHhh----CCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccC
Q 005285 240 ----FTDSEKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLR 311 (704)
Q Consensus 240 ----~~~~~~~g~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~ 311 (704)
+......+...++.+++.+.. ..+.||+|||+|.+.. ..++.|+..++....
T Consensus 78 ~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~----------~~~~~ll~~le~~~~---------- 137 (367)
T PRK14970 78 NIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS----------AAFNAFLKTLEEPPA---------- 137 (367)
T ss_pred ceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH----------HHHHHHHHHHhCCCC----------
Confidence 101111223457777776643 2357999999998842 246778887765322
Q ss_pred ccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHH
Q 005285 312 QAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNE 390 (704)
Q Consensus 312 ~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~Lv~e 390 (704)
..++|++|+.+..+.+++.+ |+ ..+.++.|+.++...++...+....+. ++..+..++..+.| +.+.+.+.++.
T Consensus 138 -~~~~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lek 212 (367)
T PRK14970 138 -HAIFILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDR 212 (367)
T ss_pred -ceEEEEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 24666677778888889887 77 478999999999998888766654432 23456777776544 55556566655
Q ss_pred HHHHHHHhCCCcccHHHHHHHHH
Q 005285 391 SGIMSVRKGHSKIQQQDIVDVLD 413 (704)
Q Consensus 391 A~~~A~r~~~~~It~~dl~~Al~ 413 (704)
...++ +.. |+.+++.+.+.
T Consensus 213 l~~y~---~~~-it~~~v~~~~~ 231 (367)
T PRK14970 213 VVTFC---GKN-ITRQAVTENLN 231 (367)
T ss_pred HHHhc---CCC-CCHHHHHHHhC
Confidence 54443 333 88888766553
No 109
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.51 E-value=5.1e-13 Score=140.21 Aligned_cols=210 Identities=19% Similarity=0.294 Sum_probs=128.1
Q ss_pred ccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccch-hhhhH------HH
Q 005285 178 DVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-EKSGA------AR 250 (704)
Q Consensus 178 ~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~-~~~g~------~~ 250 (704)
.+++.++.+..++... +.+||+||||||||++|+++|..+|.+++.++|..-... ...+. ..
T Consensus 6 ~~~~l~~~~l~~l~~g-----------~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~ 74 (262)
T TIGR02640 6 AVKRVTSRALRYLKSG-----------YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKK 74 (262)
T ss_pred HHHHHHHHHHHHHhcC-----------CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhh
Confidence 3455566666655433 579999999999999999999999999999998763321 11010 00
Q ss_pred H-HH-------------------HHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccC-C----c
Q 005285 251 I-NE-------------------MFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERT-G----I 305 (704)
Q Consensus 251 v-r~-------------------lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~-~----~ 305 (704)
+ .. .+..|.. .+.+|+|||+|.+. ..+.+.|+..|+...-.. + .
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~g~l~~A~~-~g~~lllDEi~r~~----------~~~q~~Ll~~Le~~~~~i~~~~~~~ 143 (262)
T TIGR02640 75 VHDQFIHNVVKLEDIVRQNWVDNRLTLAVR-EGFTLVYDEFTRSK----------PETNNVLLSVFEEGVLELPGKRGTS 143 (262)
T ss_pred HHHHHHHHhhhhhcccceeecCchHHHHHH-cCCEEEEcchhhCC----------HHHHHHHHHHhcCCeEEccCCCCCC
Confidence 0 00 1112222 24699999999873 235666777776432110 0 0
Q ss_pred cccccCccEEEEEEcCCCC-----CCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccc--cHHHHHHhcc-
Q 005285 306 DRFSLRQAVIFICATNRPD-----ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDV--NFEELVFRTV- 377 (704)
Q Consensus 306 ~~~~~~~~ViVIaaTN~p~-----~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dv--dl~~La~~t~- 377 (704)
.......++.||+|+|... .+++++++ || ..+.++.|+.++-.+|++.+.. ..... .+-.++..+.
T Consensus 144 ~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~---~~~~~~~~iv~~~~~~R~ 217 (262)
T TIGR02640 144 RYVDVHPEFRVIFTSNPVEYAGVHETQDALLD--RL-ITIFMDYPDIDTETAILRAKTD---VAEDSAATIVRLVREFRA 217 (262)
T ss_pred ceEecCCCCEEEEeeCCccccceecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhC---CCHHHHHHHHHHHHHHHh
Confidence 1112334678999999763 56889999 99 6899999999999999998752 22111 1111111111
Q ss_pred ---CCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Q 005285 378 ---GFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQL 416 (704)
Q Consensus 378 ---G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al~~~~ 416 (704)
-...+ ++.++.-|...+....+..++.+|+.+....++
T Consensus 218 ~~~~~~~~-~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (262)
T TIGR02640 218 SGDEITSG-LRASLMIAEVATQQDIPVDVDDEDFVDLCIDIL 258 (262)
T ss_pred hCCccCCc-HHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHh
Confidence 11111 555555555555555566778888877766554
No 110
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.51 E-value=1.9e-13 Score=165.02 Aligned_cols=201 Identities=15% Similarity=0.212 Sum_probs=139.7
Q ss_pred CCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc----------CCCEEEE
Q 005285 166 TKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES----------GLPFVFA 235 (704)
Q Consensus 166 ~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~----------g~~~v~i 235 (704)
.+-.++.++|.++ +++.++..|... ...+++|+||||||||++|+++|..+ +.+++.+
T Consensus 168 ~~~~~~~~igr~~---ei~~~~~~l~r~---------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l 235 (852)
T TIGR03346 168 REGKLDPVIGRDE---EIRRTIQVLSRR---------TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL 235 (852)
T ss_pred hCCCCCcCCCcHH---HHHHHHHHHhcC---------CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe
Confidence 4557889999985 466666655443 34578999999999999999999875 6788888
Q ss_pred eCccccch---hhhhHHHHHHHHHHHhh-CCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccC
Q 005285 236 SGAEFTDS---EKSGAARINEMFSIARR-NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLR 311 (704)
Q Consensus 236 s~s~~~~~---~~~g~~~vr~lF~~Ak~-~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~ 311 (704)
+.+.+... .+....+++.+|+.+.. ..|+||||||+|.|.+.+...+ .....|.|...+. +
T Consensus 236 ~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~--~~d~~~~Lk~~l~-------------~ 300 (852)
T TIGR03346 236 DMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEG--AMDAGNMLKPALA-------------R 300 (852)
T ss_pred eHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcc--hhHHHHHhchhhh-------------c
Confidence 87776522 35567789999998865 4589999999999975432211 1122233332221 1
Q ss_pred ccEEEEEEcCCCC-----CCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-----ccccHHHHHHhccCCC-
Q 005285 312 QAVIFICATNRPD-----ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-----EDVNFEELVFRTVGFS- 380 (704)
Q Consensus 312 ~~ViVIaaTN~p~-----~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-----~dvdl~~La~~t~G~s- 380 (704)
..+.+|++|+..+ .+|+++.| ||. .|.++.|+.+++..||+.+....... .+..+..++..+.+|.
T Consensus 301 g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~ 377 (852)
T TIGR03346 301 GELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYIT 377 (852)
T ss_pred CceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhcccccc
Confidence 2389999998764 47999999 996 58999999999999998765543332 2334555666655553
Q ss_pred ----HHHHHHHHHHHHHHHH
Q 005285 381 ----GADIRNLVNESGIMSV 396 (704)
Q Consensus 381 ----gadL~~Lv~eA~~~A~ 396 (704)
|.---.|+.+|+..+.
T Consensus 378 ~r~lPdkAidlld~a~a~~~ 397 (852)
T TIGR03346 378 DRFLPDKAIDLIDEAAARIR 397 (852)
T ss_pred ccCCchHHHHHHHHHHHHHH
Confidence 4444567777776543
No 111
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=4.4e-13 Score=151.82 Aligned_cols=209 Identities=20% Similarity=0.295 Sum_probs=141.3
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCC-------CEEEE-
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGL-------PFVFA- 235 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~-------~~v~i- 235 (704)
+..+.+|+|++|++.+.+.|+..+. +. +.+..+|||||||+|||++|+.+|+.++. |+-.+
T Consensus 9 kyRP~~f~diiGq~~i~~~L~~~i~---~~--------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~ 77 (486)
T PRK14953 9 KYRPKFFKEVIGQEIVVRILKNAVK---LQ--------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCE 77 (486)
T ss_pred hhCCCcHHHccChHHHHHHHHHHHH---cC--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccH
Confidence 4567899999999988876665543 22 35667899999999999999999998753 11110
Q ss_pred eC--------ccccch---hhhhHHHHHHHHHHHhh----CCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCc
Q 005285 236 SG--------AEFTDS---EKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDK 300 (704)
Q Consensus 236 s~--------s~~~~~---~~~g~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~ 300 (704)
+| .++... ...+...+|.+.+.+.. ..+.|++|||+|.+.. ...+.|+..++...
T Consensus 78 nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~----------~a~naLLk~LEepp 147 (486)
T PRK14953 78 NCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK----------EAFNALLKTLEEPP 147 (486)
T ss_pred HHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH----------HHHHHHHHHHhcCC
Confidence 11 011110 11223345555554432 2357999999998842 24688888887643
Q ss_pred ccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccc-cccHHHHHHhccCC
Q 005285 301 ERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAE-DVNFEELVFRTVGF 379 (704)
Q Consensus 301 ~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~-dvdl~~La~~t~G~ 379 (704)
. .+++|.+|+.++.+.+++.+ |+. .+.|.+|+.++..+++..++....+.. +..+..++..+.|
T Consensus 148 ~-----------~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G- 212 (486)
T PRK14953 148 P-----------RTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG- 212 (486)
T ss_pred C-----------CeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 2 25666677778888888888 874 799999999999999998776555432 2335667776554
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 005285 380 SGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (704)
Q Consensus 380 sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al 412 (704)
+.+++.++++.+... +...||.+++.+++
T Consensus 213 ~lr~al~~Ldkl~~~----~~~~It~~~V~~~l 241 (486)
T PRK14953 213 GMRDAASLLDQASTY----GEGKVTIKVVEEFL 241 (486)
T ss_pred CHHHHHHHHHHHHHh----cCCCcCHHHHHHHh
Confidence 567777777766544 23468888887755
No 112
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=2.1e-13 Score=157.64 Aligned_cols=203 Identities=19% Similarity=0.272 Sum_probs=144.1
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC------------
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP------------ 231 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~------------ 231 (704)
+..+.+|+||+|++++++.|...+. . .+.+..+|||||+|+|||++|+++|+.++.+
T Consensus 9 k~RP~~f~~iiGq~~v~~~L~~~i~---~--------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~ 77 (576)
T PRK14965 9 KYRPQTFSDLTGQEHVSRTLQNAID---T--------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCP 77 (576)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHH---c--------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccH
Confidence 4567899999999988877776554 2 2467889999999999999999999987542
Q ss_pred ------------EEEEeCccccchhhhhHHHHHHHHHHHhhC----CCeEEEEccchhhhccCCCCChhHHHHHHHHHHH
Q 005285 232 ------------FVFASGAEFTDSEKSGAARINEMFSIARRN----APAFVFVDEIDAIAGRHARKDPRRRATFEALIAQ 295 (704)
Q Consensus 232 ------------~v~is~s~~~~~~~~g~~~vr~lF~~Ak~~----~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ 295 (704)
++.+++.+ ..+...++.+.+.++.. ...|++|||+|.+.. ...|.|+..
T Consensus 78 ~c~~i~~g~~~d~~eid~~s-----~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~----------~a~naLLk~ 142 (576)
T PRK14965 78 PCVEITEGRSVDVFEIDGAS-----NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST----------NAFNALLKT 142 (576)
T ss_pred HHHHHhcCCCCCeeeeeccC-----ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH----------HHHHHHHHH
Confidence 22222211 12334567766655432 235999999998842 357899999
Q ss_pred hcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHH
Q 005285 296 LDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVF 374 (704)
Q Consensus 296 ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~ 374 (704)
|+.... .+++|++|+.++.|.+.+++ |+ ..+.|..++.++....+...+....+. ++..+..++.
T Consensus 143 LEepp~-----------~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~ 208 (576)
T PRK14965 143 LEEPPP-----------HVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVAR 208 (576)
T ss_pred HHcCCC-----------CeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 987433 37888888999999999998 88 578999999999888888766554432 2334667777
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHH
Q 005285 375 RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDV 411 (704)
Q Consensus 375 ~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~A 411 (704)
.+.| +.+++.+++..+..+. + ..|+.+++...
T Consensus 209 ~a~G-~lr~al~~Ldqliay~---g-~~It~edV~~l 240 (576)
T PRK14965 209 KGDG-SMRDSLSTLDQVLAFC---G-DAVGDDDVAEL 240 (576)
T ss_pred HcCC-CHHHHHHHHHHHHHhc---c-CCCCHHHHHHH
Confidence 7665 5666777776555443 2 35888877654
No 113
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=2.4e-13 Score=155.26 Aligned_cols=203 Identities=19% Similarity=0.289 Sum_probs=141.3
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCC-------------
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGL------------- 230 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~------------- 230 (704)
+..+.+|++++|++.+++.|...+. + .+.|+++||+||||+|||++|+++|+.+.+
T Consensus 9 KyRP~~F~dIIGQe~iv~~L~~aI~---~--------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~ 77 (605)
T PRK05896 9 KYRPHNFKQIIGQELIKKILVNAIL---N--------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCS 77 (605)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH---c--------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 5677899999999988777665432 2 245788999999999999999999998743
Q ss_pred -----------CEEEEeCccccchhhhhHHHHHHHHHHHhhC----CCeEEEEccchhhhccCCCCChhHHHHHHHHHHH
Q 005285 231 -----------PFVFASGAEFTDSEKSGAARINEMFSIARRN----APAFVFVDEIDAIAGRHARKDPRRRATFEALIAQ 295 (704)
Q Consensus 231 -----------~~v~is~s~~~~~~~~g~~~vr~lF~~Ak~~----~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ 295 (704)
.++.++++. ..+...+|.+...+... ...|++|||+|.+.. ...+.|+..
T Consensus 78 sCr~i~~~~h~DiieIdaas-----~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~----------~A~NaLLKt 142 (605)
T PRK05896 78 VCESINTNQSVDIVELDAAS-----NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST----------SAWNALLKT 142 (605)
T ss_pred HHHHHHcCCCCceEEecccc-----ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH----------HHHHHHHHH
Confidence 122222211 12334466666555432 235999999998832 246889988
Q ss_pred hcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHH
Q 005285 296 LDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVF 374 (704)
Q Consensus 296 ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~ 374 (704)
|+.... .+++|++|+.+..|.+++++ |+. .+.|.+|+..+....++..+...... ++..+..++.
T Consensus 143 LEEPp~-----------~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~ 208 (605)
T PRK05896 143 LEEPPK-----------HVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIAD 208 (605)
T ss_pred HHhCCC-----------cEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 876432 36788888889999999998 884 79999999999999888776544321 2334667777
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHH
Q 005285 375 RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDV 411 (704)
Q Consensus 375 ~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~A 411 (704)
.+.| +.+++.++++.+..++ + ..|+.+++.+.
T Consensus 209 lS~G-dlR~AlnlLekL~~y~---~-~~It~e~V~el 240 (605)
T PRK05896 209 LADG-SLRDGLSILDQLSTFK---N-SEIDIEDINKT 240 (605)
T ss_pred HcCC-cHHHHHHHHHHHHhhc---C-CCCCHHHHHHH
Confidence 7655 5666667777644432 3 23888777654
No 114
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=3e-13 Score=153.46 Aligned_cols=204 Identities=21% Similarity=0.266 Sum_probs=144.7
Q ss_pred ccCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCC------------
Q 005285 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGL------------ 230 (704)
Q Consensus 163 ~~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~------------ 230 (704)
.+..+.+|+||+|++.+++.|+..+. . .+.|..+|||||||+|||++|+++|+.+..
T Consensus 6 ~KyRP~~fdeiiGqe~v~~~L~~~I~---~--------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C 74 (535)
T PRK08451 6 LKYRPKHFDELIGQESVSKTLSLALD---N--------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTC 74 (535)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHH---c--------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 35677899999999998887776654 2 246778899999999999999999998632
Q ss_pred ------------CEEEEeCccccchhhhhHHHHHHHHHHHhhC----CCeEEEEccchhhhccCCCCChhHHHHHHHHHH
Q 005285 231 ------------PFVFASGAEFTDSEKSGAARINEMFSIARRN----APAFVFVDEIDAIAGRHARKDPRRRATFEALIA 294 (704)
Q Consensus 231 ------------~~v~is~s~~~~~~~~g~~~vr~lF~~Ak~~----~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~ 294 (704)
.++.+++++ ..+...++.+...+... ...|++|||+|.+. ...+|.||.
T Consensus 75 ~~C~~~~~~~h~dv~eldaas-----~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt----------~~A~NALLK 139 (535)
T PRK08451 75 IQCQSALENRHIDIIEMDAAS-----NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT----------KEAFNALLK 139 (535)
T ss_pred HHHHHHhhcCCCeEEEecccc-----ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC----------HHHHHHHHH
Confidence 122222211 11234566665543321 23599999999884 236788999
Q ss_pred HhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHH
Q 005285 295 QLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELV 373 (704)
Q Consensus 295 ~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La 373 (704)
.|+.... .+.+|.+|+.+..|.+++++ |+ ..++|.+++.++..+.++..+...... .+..+..++
T Consensus 140 ~LEEpp~-----------~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia 205 (535)
T PRK08451 140 TLEEPPS-----------YVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILA 205 (535)
T ss_pred HHhhcCC-----------ceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 9987533 26777778888999999998 87 689999999999988888776654432 233567777
Q ss_pred HhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHH
Q 005285 374 FRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDV 411 (704)
Q Consensus 374 ~~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~A 411 (704)
..+.| +.+++.+++..+...+ ...||.+++.+.
T Consensus 206 ~~s~G-dlR~alnlLdqai~~~----~~~It~~~V~~~ 238 (535)
T PRK08451 206 RSGNG-SLRDTLTLLDQAIIYC----KNAITESKVADM 238 (535)
T ss_pred HHcCC-cHHHHHHHHHHHHHhc----CCCCCHHHHHHH
Confidence 76555 7788888887776554 345787777654
No 115
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.51 E-value=6.1e-13 Score=136.34 Aligned_cols=205 Identities=13% Similarity=0.181 Sum_probs=129.6
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccc
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEF 240 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~ 240 (704)
-..+.+|+++++.... ..+..+..+.. +...+.+++|+||||||||+||+++++++ +.+++++++.++
T Consensus 11 ~~~~~~~d~f~~~~~~-~~~~~l~~~~~--------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 11 PPPPPTFDNFVAGENA-ELVARLRELAA--------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred CCChhhhcccccCCcH-HHHHHHHHHHh--------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 4556889998744321 22233323222 22346789999999999999999999865 778899988775
Q ss_pred cchhhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEc
Q 005285 241 TDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (704)
Q Consensus 241 ~~~~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (704)
... +. ......+|+|||+|.+.. .....+..++..+.. . ...++|.++
T Consensus 82 ~~~-----------~~--~~~~~~~liiDdi~~l~~-------~~~~~L~~~~~~~~~---~---------~~~~vl~~~ 129 (227)
T PRK08903 82 LLA-----------FD--FDPEAELYAVDDVERLDD-------AQQIALFNLFNRVRA---H---------GQGALLVAG 129 (227)
T ss_pred HHH-----------Hh--hcccCCEEEEeChhhcCc-------hHHHHHHHHHHHHHH---c---------CCcEEEEeC
Confidence 432 11 122356899999998732 122233444443322 1 112344454
Q ss_pred CCCC---CCcccccCCCcc--ceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHH
Q 005285 321 NRPD---ELDLEFVRPGRI--DRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIM 394 (704)
Q Consensus 321 N~p~---~LD~aLlRpgRf--d~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~Lv~eA~~~ 394 (704)
+.+. .+.+.+.+ || ...+.+++|+.+++..+++.+.....+. ++.-+..|++. ..-+.+++.++++.-...
T Consensus 130 ~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~-~~gn~~~l~~~l~~l~~~ 206 (227)
T PRK08903 130 PAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTH-FRRDMPSLMALLDALDRY 206 (227)
T ss_pred CCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHH
Confidence 4322 24466665 77 4689999999999999998766543332 22246777775 444788999999986655
Q ss_pred HHHhCCCcccHHHHHHHHH
Q 005285 395 SVRKGHSKIQQQDIVDVLD 413 (704)
Q Consensus 395 A~r~~~~~It~~dl~~Al~ 413 (704)
|... +..||...+.+++.
T Consensus 207 ~~~~-~~~i~~~~~~~~l~ 224 (227)
T PRK08903 207 SLEQ-KRPVTLPLLREMLA 224 (227)
T ss_pred HHHh-CCCCCHHHHHHHHh
Confidence 5444 46799888777654
No 116
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.50 E-value=3.8e-13 Score=144.15 Aligned_cols=204 Identities=18% Similarity=0.247 Sum_probs=131.3
Q ss_pred ccCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcC-----CCEEEEeC
Q 005285 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESG-----LPFVFASG 237 (704)
Q Consensus 163 ~~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g-----~~~v~is~ 237 (704)
++..+.+|+|++|++++++.+...+. .+ . ..++||+||||||||++++++++++. .+++.+++
T Consensus 9 ~kyrP~~~~~~~g~~~~~~~l~~~i~---~~--------~-~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~ 76 (319)
T PRK00440 9 EKYRPRTLDEIVGQEEIVERLKSYVK---EK--------N-MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNA 76 (319)
T ss_pred hhhCCCcHHHhcCcHHHHHHHHHHHh---CC--------C-CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecc
Confidence 35677899999999987777666543 22 1 22589999999999999999999863 34555554
Q ss_pred ccccchhhhhHHHHHHHHH-HHhh-----CCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccC
Q 005285 238 AEFTDSEKSGAARINEMFS-IARR-----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLR 311 (704)
Q Consensus 238 s~~~~~~~~g~~~vr~lF~-~Ak~-----~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~ 311 (704)
++-.. ...++..+. .+.. ..+.+|+|||+|.+... ..+.|+..++.....
T Consensus 77 ~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~----------~~~~L~~~le~~~~~--------- 132 (319)
T PRK00440 77 SDERG-----IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSD----------AQQALRRTMEMYSQN--------- 132 (319)
T ss_pred ccccc-----hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHH----------HHHHHHHHHhcCCCC---------
Confidence 43221 111222211 1211 23569999999988421 234566656543322
Q ss_pred ccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHH
Q 005285 312 QAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNE 390 (704)
Q Consensus 312 ~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~Lv~e 390 (704)
..+|+++|.+..+.+++.+ |+. .+++++|+.++...+++.++...... .+..+..++..+.| |++.++++
T Consensus 133 --~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g----d~r~~~~~ 203 (319)
T PRK00440 133 --TRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG----DMRKAINA 203 (319)
T ss_pred --CeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHH
Confidence 3566677877877778877 775 58999999999999999887654432 23357778776554 44444444
Q ss_pred HHHHHHHhCCCcccHHHHHHHHH
Q 005285 391 SGIMSVRKGHSKIQQQDIVDVLD 413 (704)
Q Consensus 391 A~~~A~r~~~~~It~~dl~~Al~ 413 (704)
....+.. ...||.+++..++.
T Consensus 204 l~~~~~~--~~~it~~~v~~~~~ 224 (319)
T PRK00440 204 LQAAAAT--GKEVTEEAVYKITG 224 (319)
T ss_pred HHHHHHc--CCCCCHHHHHHHhC
Confidence 3333222 35799999887764
No 117
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.49 E-value=1.1e-12 Score=137.91 Aligned_cols=97 Identities=20% Similarity=0.268 Sum_probs=75.3
Q ss_pred EEEEEcCC------------CCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCH
Q 005285 315 IFICATNR------------PDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSG 381 (704)
Q Consensus 315 iVIaaTN~------------p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sg 381 (704)
++|.|||+ |.-+|..|+. |+ ..|...+++.++.++|++..+....+. ++..++.|+....--|-
T Consensus 322 Iii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rl-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSL 398 (450)
T COG1224 322 IIILATNRGMTKIRGTDIESPHGIPLDLLD--RL-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSL 398 (450)
T ss_pred EEEEEcCCceeeecccCCcCCCCCCHhhhh--he-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhH
Confidence 77788887 4556667776 66 578888999999999999887755443 23346777777666666
Q ss_pred HHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Q 005285 382 ADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414 (704)
Q Consensus 382 adL~~Lv~eA~~~A~r~~~~~It~~dl~~Al~~ 414 (704)
+=--+|+.-|.+.|.+++...|..+|++.|-+-
T Consensus 399 RYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~l 431 (450)
T COG1224 399 RYAVQLLTPASIIAKRRGSKRVEVEDVERAKEL 431 (450)
T ss_pred HHHHHhccHHHHHHHHhCCCeeehhHHHHHHHH
Confidence 666788888999999999999999999888653
No 118
>PRK08727 hypothetical protein; Validated
Probab=99.49 E-value=1.9e-12 Score=133.67 Aligned_cols=209 Identities=18% Similarity=0.261 Sum_probs=130.0
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHH---cCCCEEEEeCccc
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEF 240 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e---~g~~~v~is~s~~ 240 (704)
-.+..+|++.++.++. .+..+...... .....++|+||+|||||+|++|++.+ .|...++++..++
T Consensus 12 ~~~~~~f~~f~~~~~n--~~~~~~~~~~~---------~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~ 80 (233)
T PRK08727 12 YPSDQRFDSYIAAPDG--LLAQLQALAAG---------QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAA 80 (233)
T ss_pred CCCcCChhhccCCcHH--HHHHHHHHHhc---------cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHh
Confidence 3456789999876642 22222221111 12356999999999999999999765 3677778876554
Q ss_pred cchhhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEc
Q 005285 241 TDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (704)
Q Consensus 241 ~~~~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (704)
.. .+...++... ...+|+|||+|.+.+. ......+..+++.+... +..||+|+
T Consensus 81 ~~-------~~~~~~~~l~--~~dlLiIDDi~~l~~~-----~~~~~~lf~l~n~~~~~-------------~~~vI~ts 133 (233)
T PRK08727 81 AG-------RLRDALEALE--GRSLVALDGLESIAGQ-----REDEVALFDFHNRARAA-------------GITLLYTA 133 (233)
T ss_pred hh-------hHHHHHHHHh--cCCEEEEeCcccccCC-----hHHHHHHHHHHHHHHHc-------------CCeEEEEC
Confidence 32 2233444333 3469999999988532 12223344455544321 12355555
Q ss_pred C-CCCCC---cccccCCCcc--ceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHH
Q 005285 321 N-RPDEL---DLEFVRPGRI--DRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGI 393 (704)
Q Consensus 321 N-~p~~L---D~aLlRpgRf--d~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~Lv~eA~~ 393 (704)
| .|..+ ++.+.+ || ...+.++.|+.+++.+|++.++....+. ++..+..|+.+..| +.+.+.++++....
T Consensus 134 ~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~~ 210 (233)
T PRK08727 134 RQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGER-ELAGLVALLDRLDR 210 (233)
T ss_pred CCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 4 55544 688888 87 4578999999999999999876543332 23346777877654 45555555665554
Q ss_pred HHHHhCCCcccHHHHHHHHHH
Q 005285 394 MSVRKGHSKIQQQDIVDVLDK 414 (704)
Q Consensus 394 ~A~r~~~~~It~~dl~~Al~~ 414 (704)
.+...+ ..||...+.+.+..
T Consensus 211 ~~~~~~-~~it~~~~~~~l~~ 230 (233)
T PRK08727 211 ESLAAK-RRVTVPFLRRVLEE 230 (233)
T ss_pred HHHHhC-CCCCHHHHHHHHhh
Confidence 444444 46898888777653
No 119
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=4.3e-13 Score=148.89 Aligned_cols=215 Identities=17% Similarity=0.230 Sum_probs=143.2
Q ss_pred ccCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCE-E--------
Q 005285 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPF-V-------- 233 (704)
Q Consensus 163 ~~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~-v-------- 233 (704)
++..+.+|++|+|++.+++.|+..+. + .+.|..+||+||||+|||++|+++|+++...- .
T Consensus 8 ~k~RP~~~~eiiGq~~~~~~L~~~~~---~--------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~ 76 (397)
T PRK14955 8 RKYRPKKFADITAQEHITRTIQNSLR---M--------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQE 76 (397)
T ss_pred HhcCCCcHhhccChHHHHHHHHHHHH---h--------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccccc
Confidence 35677899999999998887766544 2 25678899999999999999999999886521 0
Q ss_pred -EEeCcc--------------ccch---hhhhHHHHHHHHHHHhh----CCCeEEEEccchhhhccCCCCChhHHHHHHH
Q 005285 234 -FASGAE--------------FTDS---EKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEA 291 (704)
Q Consensus 234 -~is~s~--------------~~~~---~~~g~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~ 291 (704)
.-.|.. +... ...+...++.+.+.+.. ....|+||||+|.+.. ...+.
T Consensus 77 ~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~----------~~~~~ 146 (397)
T PRK14955 77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI----------AAFNA 146 (397)
T ss_pred CCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH----------HHHHH
Confidence 011111 1111 11223456665555532 2236999999998842 24677
Q ss_pred HHHHhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCc-cccccHH
Q 005285 292 LIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQL-AEDVNFE 370 (704)
Q Consensus 292 LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l-~~dvdl~ 370 (704)
|+..++.... ..++|++|+.+..+-+++.+ |+. .++|.+++.++..+.++..+..... .++..+.
T Consensus 147 LLk~LEep~~-----------~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~ 212 (397)
T PRK14955 147 FLKTLEEPPP-----------HAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQ 212 (397)
T ss_pred HHHHHhcCCC-----------CeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 8888875432 24666667777888888887 774 7899999999988888877654433 2233466
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHH-hCCCcccHHHHHHHHH
Q 005285 371 ELVFRTVGFSGADIRNLVNESGIMSVR-KGHSKIQQQDIVDVLD 413 (704)
Q Consensus 371 ~La~~t~G~sgadL~~Lv~eA~~~A~r-~~~~~It~~dl~~Al~ 413 (704)
.|+..+.| +.+.+.+.++.+..++.. .....|+.+++.+.+.
T Consensus 213 ~l~~~s~g-~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v~ 255 (397)
T PRK14955 213 LIGRKAQG-SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELLN 255 (397)
T ss_pred HHHHHcCC-CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHHC
Confidence 77776554 566677777766655532 2245799988877663
No 120
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=7.5e-13 Score=148.92 Aligned_cols=205 Identities=17% Similarity=0.221 Sum_probs=137.8
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC------------
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP------------ 231 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~------------ 231 (704)
+..+.+|+||+|++.+++.|...+. .. +.|..+|||||||+|||++|+++|+.+...
T Consensus 10 kyRP~~~~diiGq~~~v~~L~~~i~---~~--------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c 78 (451)
T PRK06305 10 KYRPQTFSEILGQDAVVAVLKNALR---FN--------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQC 78 (451)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH---cC--------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCccc
Confidence 4567899999999988776665543 22 467889999999999999999999976432
Q ss_pred -------------EEEEeCccccchhhhhHHHHHHHHHHHh----hCCCeEEEEccchhhhccCCCCChhHHHHHHHHHH
Q 005285 232 -------------FVFASGAEFTDSEKSGAARINEMFSIAR----RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIA 294 (704)
Q Consensus 232 -------------~v~is~s~~~~~~~~g~~~vr~lF~~Ak----~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~ 294 (704)
++.+++.. ..+...++.+-+... .....|++|||+|.+.. ...+.|+.
T Consensus 79 ~~C~~i~~~~~~d~~~i~g~~-----~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~----------~~~n~LLk 143 (451)
T PRK06305 79 ASCKEISSGTSLDVLEIDGAS-----HRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK----------EAFNSLLK 143 (451)
T ss_pred HHHHHHhcCCCCceEEeeccc-----cCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH----------HHHHHHHH
Confidence 22232211 112233443322222 23467999999999842 24688888
Q ss_pred HhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHH
Q 005285 295 QLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELV 373 (704)
Q Consensus 295 ~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La 373 (704)
.|+.... .+++|++||.+..|.+++++ |+ ..++|..++.++..+.+...+...... ++..+..|+
T Consensus 144 ~lEep~~-----------~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~ 209 (451)
T PRK06305 144 TLEEPPQ-----------HVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIA 209 (451)
T ss_pred HhhcCCC-----------CceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 8876432 36777788888999999988 88 579999999999998888766544332 233467777
Q ss_pred HhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHH
Q 005285 374 FRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLD 413 (704)
Q Consensus 374 ~~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al~ 413 (704)
..+.| +.+++.++++..... .+ ..|+.+++.+++.
T Consensus 210 ~~s~g-dlr~a~~~Lekl~~~---~~-~~It~~~V~~l~~ 244 (451)
T PRK06305 210 RAAQG-SLRDAESLYDYVVGL---FP-KSLDPDSVAKALG 244 (451)
T ss_pred HHcCC-CHHHHHHHHHHHHHh---cc-CCcCHHHHHHHHC
Confidence 77654 445555555543332 22 3488888776653
No 121
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=9e-13 Score=151.54 Aligned_cols=209 Identities=17% Similarity=0.236 Sum_probs=143.6
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC-------EEEE-
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP-------FVFA- 235 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~-------~v~i- 235 (704)
+..+.+|+||+|++.+++.|+..+. +. +.+..+|||||||+|||++|+++|+.++.+ +-.+
T Consensus 9 kyRP~~f~diiGqe~iv~~L~~~i~---~~--------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~ 77 (563)
T PRK06647 9 KRRPRDFNSLEGQDFVVETLKHSIE---SN--------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECS 77 (563)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHH---cC--------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccch
Confidence 4667899999999998877666554 22 467789999999999999999999987642 1110
Q ss_pred eC--------ccccchh---hhhHHHHHHHHHHHhh----CCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCc
Q 005285 236 SG--------AEFTDSE---KSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDK 300 (704)
Q Consensus 236 s~--------s~~~~~~---~~g~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~ 300 (704)
+| .++.... ..+...++.+.+.+.. ....|++|||+|.+. ...+|.|+..++...
T Consensus 78 ~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls----------~~a~naLLK~LEepp 147 (563)
T PRK06647 78 SCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS----------NSAFNALLKTIEEPP 147 (563)
T ss_pred HHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC----------HHHHHHHHHhhccCC
Confidence 00 0111111 1223345555544332 345799999999883 236788998887633
Q ss_pred ccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCC
Q 005285 301 ERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGF 379 (704)
Q Consensus 301 ~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~ 379 (704)
. .+++|++|+.+..|.+++++ |+. .+.|.+++.++..++++..+....+. ++..+..|+..+.|
T Consensus 148 ~-----------~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G- 212 (563)
T PRK06647 148 P-----------YIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG- 212 (563)
T ss_pred C-----------CEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 2 36888888888999999988 884 68999999999999998776544432 23346667776555
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 005285 380 SGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (704)
Q Consensus 380 sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al 412 (704)
+.+++.+++..+..++ ...|+.+++.+++
T Consensus 213 dlR~alslLdklis~~----~~~It~e~V~~ll 241 (563)
T PRK06647 213 SVRDAYTLFDQVVSFS----DSDITLEQIRSKM 241 (563)
T ss_pred CHHHHHHHHHHHHhhc----CCCCCHHHHHHHh
Confidence 6777888877665443 2458888877654
No 122
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.48 E-value=8.1e-13 Score=148.58 Aligned_cols=219 Identities=14% Similarity=0.221 Sum_probs=143.0
Q ss_pred CccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc-----CCCEEEEeCcccc
Q 005285 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-----GLPFVFASGAEFT 241 (704)
Q Consensus 167 ~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~-----g~~~v~is~s~~~ 241 (704)
..+|++.+..++..........+..+| | ....+++|||++|||||+|++|+++++ +..++++++.+|.
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a~~~------~-~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~ 183 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVSKNP------G-ISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFA 183 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHHhCc------C-cccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH
Confidence 468999876665444444444444444 1 234579999999999999999999854 5788999999887
Q ss_pred chhhhhHH----HHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEE
Q 005285 242 DSEKSGAA----RINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (704)
Q Consensus 242 ~~~~~g~~----~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (704)
........ .+....+.. ..+.+|+|||++.+.++ ......+..+++.+.... -.+|
T Consensus 184 ~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l~~k-----~~~~e~lf~l~N~~~~~~-------------k~iI 243 (450)
T PRK14087 184 RKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFLSYK-----EKTNEIFFTIFNNFIEND-------------KQLF 243 (450)
T ss_pred HHHHHHHHHhhhHHHHHHHHh--ccCCEEEEeccccccCC-----HHHHHHHHHHHHHHHHcC-------------CcEE
Confidence 66322211 122211122 34579999999988532 222233444444433211 1345
Q ss_pred EEcCC-CC---CCcccccCCCccc--eeeeeCCCCHHHHHHHHHHHhcCCCc---cccccHHHHHHhccCCCHHHHHHHH
Q 005285 318 CATNR-PD---ELDLEFVRPGRID--RRLYIGLPDAKQRVQIFDVHSAGKQL---AEDVNFEELVFRTVGFSGADIRNLV 388 (704)
Q Consensus 318 aaTN~-p~---~LD~aLlRpgRfd--~~I~v~~Pd~~eR~~Il~~~l~~~~l---~~dvdl~~La~~t~G~sgadL~~Lv 388 (704)
.|+|. |. .+++.|.+ ||. ..+.+..|+.++|.+|++.++....+ .++.-+..|+....| +.+.+.+++
T Consensus 244 ltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL 320 (450)
T PRK14087 244 FSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSV 320 (450)
T ss_pred EECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHH
Confidence 55554 43 35677877 885 47889999999999999988865432 223346677777665 788999999
Q ss_pred HHHHHHHHHhC-CCcccHHHHHHHHHHH
Q 005285 389 NESGIMSVRKG-HSKIQQQDIVDVLDKQ 415 (704)
Q Consensus 389 ~eA~~~A~r~~-~~~It~~dl~~Al~~~ 415 (704)
+.+...+.... ...|+.+.+.+++...
T Consensus 321 ~~l~~~a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 321 SRLNFWSQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred HHHHHHHhcccCCCCCCHHHHHHHHhhc
Confidence 98876665542 2569999888887653
No 123
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.48 E-value=2.3e-13 Score=160.69 Aligned_cols=173 Identities=19% Similarity=0.234 Sum_probs=117.9
Q ss_pred ceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccchh------h
Q 005285 172 EVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE------K 245 (704)
Q Consensus 172 dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~~------~ 245 (704)
.|+|++++++.|.+.+...+....- ..++..++||+||||||||++|+++|..++.+|+.++++++.+.. |
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~---~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG 535 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGH---EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIG 535 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccC---CCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcC
Confidence 3789998888877777654321100 012234689999999999999999999999999999999986521 1
Q ss_pred -----hhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEc
Q 005285 246 -----SGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (704)
Q Consensus 246 -----~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (704)
.+...-..+.+..+.+..|||||||||.+.+ ...+.|+..|+...-.....+.....++++|+||
T Consensus 536 ~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~----------~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~Ts 605 (758)
T PRK11034 536 APPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP----------DVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTT 605 (758)
T ss_pred CCCCcccccccchHHHHHHhCCCcEEEeccHhhhhH----------HHHHHHHHHHhcCeeecCCCceecCCCcEEEEeC
Confidence 0111112334444556669999999999842 3677888888743221111122233568999999
Q ss_pred CCC-------------------------CCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhc
Q 005285 321 NRP-------------------------DELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA 359 (704)
Q Consensus 321 N~p-------------------------~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~ 359 (704)
|.- ..+.|.|+. |+|.+|.|++.+.++..+|+...+.
T Consensus 606 N~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~ 667 (758)
T PRK11034 606 NAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_pred CcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHH
Confidence 932 124466666 9999999999999999999876654
No 124
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.47 E-value=3.5e-13 Score=145.45 Aligned_cols=225 Identities=18% Similarity=0.270 Sum_probs=138.1
Q ss_pred CCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc-------CCCEEEE--e
Q 005285 166 TKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-------GLPFVFA--S 236 (704)
Q Consensus 166 ~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~-------g~~~v~i--s 236 (704)
....|++|+|++++++.|.-. +.++ .-.++||+||||||||++||++|+-+ +.++-.. .
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~---~~~~---------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLT---AIDP---------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHH---Hhcc---------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 456899999999887765532 1112 12479999999999999999999987 3322111 1
Q ss_pred Cc-cc---------------cch-hh------hhHHHHHH-------HHHHH--hhCCCeEEEEccchhhhccCCCCChh
Q 005285 237 GA-EF---------------TDS-EK------SGAARINE-------MFSIA--RRNAPAFVFVDEIDAIAGRHARKDPR 284 (704)
Q Consensus 237 ~s-~~---------------~~~-~~------~g~~~vr~-------lF~~A--k~~~P~ILfIDEiDal~~~~~~~~~e 284 (704)
+. ++ ... .. .|...+.. .|..- ......+|||||++.+..
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~-------- 142 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLED-------- 142 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCH--------
Confidence 10 00 000 00 01000000 01100 011125899999998842
Q ss_pred HHHHHHHHHHHhcCCcc---cCCccccccCccEEEEEEcCCCC-CCcccccCCCccceeeeeCCCCH-HHHHHHHHHHhc
Q 005285 285 RRATFEALIAQLDGDKE---RTGIDRFSLRQAVIFICATNRPD-ELDLEFVRPGRIDRRLYIGLPDA-KQRVQIFDVHSA 359 (704)
Q Consensus 285 ~~~~ln~LL~~ld~~~~---~~~~~~~~~~~~ViVIaaTN~p~-~LD~aLlRpgRfd~~I~v~~Pd~-~eR~~Il~~~l~ 359 (704)
.+++.|+..|+.... ..| ........+++++|+|..+ .++++++. ||...+.++.|.. ++|.+|++....
T Consensus 143 --~~q~~Lle~mee~~v~v~r~G-~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~~~ 217 (334)
T PRK13407 143 --HIVDLLLDVAQSGENVVEREG-LSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRRDA 217 (334)
T ss_pred --HHHHHHHHHHHcCCeEEEECC-eEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHhhc
Confidence 367788888865431 111 1123345689999999755 58899998 9999999998876 899999987532
Q ss_pred CCC----cc-----------c---------------ccc---HHHHHHhcc-CCCHHHHHHHHHHHHHHHHHhCCCcccH
Q 005285 360 GKQ----LA-----------E---------------DVN---FEELVFRTV-GFSGADIRNLVNESGIMSVRKGHSKIQQ 405 (704)
Q Consensus 360 ~~~----l~-----------~---------------dvd---l~~La~~t~-G~sgadL~~Lv~eA~~~A~r~~~~~It~ 405 (704)
... +. . +.. +..++..+. .-.-++|. +++.|...|+.+|++.|+.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~-l~~aA~a~A~l~Gr~~V~~ 296 (334)
T PRK13407 218 YDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELT-LLRAARALAAFEGAEAVGR 296 (334)
T ss_pred ccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHH-HHHHHHHHHHHcCCCeeCH
Confidence 110 00 0 000 122333332 12345565 9999999999999999999
Q ss_pred HHHHHHHHHHH
Q 005285 406 QDIVDVLDKQL 416 (704)
Q Consensus 406 ~dl~~Al~~~~ 416 (704)
+|+..+..-++
T Consensus 297 ~Di~~~~~~vl 307 (334)
T PRK13407 297 SHLRSVATMAL 307 (334)
T ss_pred HHHHHHHHHhh
Confidence 99987775544
No 125
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.46 E-value=1.4e-12 Score=144.14 Aligned_cols=183 Identities=23% Similarity=0.314 Sum_probs=117.2
Q ss_pred ceecCcccHHHHHHHHH----HhCC-chhhhhcCC-ccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccch--
Q 005285 172 EVVLGGDVWDLLDELMI----YMGN-PMQYYERGV-QFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-- 243 (704)
Q Consensus 172 dVvG~~~~k~~L~elv~----~l~~-p~~~~~~g~-~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~-- 243 (704)
.|+|++++++.+...+. .++. +..-...++ ....++||+||||||||++|+++|..+++||+.+++..+...
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 36899999988876652 1111 000000011 124689999999999999999999999999999998887653
Q ss_pred hhhh-HHHHHHHHHHH----hhCCCeEEEEccchhhhccCCC----CChhHHHHHHHHHHHhcCCccc--CCccccccCc
Q 005285 244 EKSG-AARINEMFSIA----RRNAPAFVFVDEIDAIAGRHAR----KDPRRRATFEALIAQLDGDKER--TGIDRFSLRQ 312 (704)
Q Consensus 244 ~~~g-~~~vr~lF~~A----k~~~P~ILfIDEiDal~~~~~~----~~~e~~~~ln~LL~~ld~~~~~--~~~~~~~~~~ 312 (704)
.+.. ...+..++..+ ....++||||||+|.+..++.+ .+.....+++.||..|+|.... ....+..+..
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~ 237 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQ 237 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCC
Confidence 2221 22333433322 2345789999999999764321 1222335778889888875432 1112233345
Q ss_pred cEEEEEEcCCCC--------------------------------------------------CCcccccCCCccceeeee
Q 005285 313 AVIFICATNRPD--------------------------------------------------ELDLEFVRPGRIDRRLYI 342 (704)
Q Consensus 313 ~ViVIaaTN~p~--------------------------------------------------~LD~aLlRpgRfd~~I~v 342 (704)
+.++|.|+|-.. .+.|+|+ ||+|..+.|
T Consensus 238 ~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl--gRld~Iv~f 315 (413)
T TIGR00382 238 EFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI--GRLPVIATL 315 (413)
T ss_pred CeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh--CCCCeEeec
Confidence 677787777510 0223333 599999999
Q ss_pred CCCCHHHHHHHHHH
Q 005285 343 GLPDAKQRVQIFDV 356 (704)
Q Consensus 343 ~~Pd~~eR~~Il~~ 356 (704)
.+.+.+...+|+..
T Consensus 316 ~pL~~~~L~~Il~~ 329 (413)
T TIGR00382 316 EKLDEEALIAILTK 329 (413)
T ss_pred CCCCHHHHHHHHHH
Confidence 99999999999875
No 126
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=1.7e-12 Score=150.78 Aligned_cols=208 Identities=21% Similarity=0.274 Sum_probs=140.6
Q ss_pred ccCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEE----EeCc
Q 005285 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF----ASGA 238 (704)
Q Consensus 163 ~~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~----is~s 238 (704)
.+..+.+|++++|++++++.|+..+..- +.+.++||+||||||||++|+++|+.+++.... -.|.
T Consensus 8 ~kyRP~~f~~liGq~~i~~~L~~~l~~~-----------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg 76 (620)
T PRK14948 8 HKYRPQRFDELVGQEAIATTLKNALISN-----------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCG 76 (620)
T ss_pred HHhCCCcHhhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCc
Confidence 3556789999999999888877766531 245689999999999999999999988652110 0111
Q ss_pred --------------cccch---hhhhHHHHHHHHHHHhhC----CCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhc
Q 005285 239 --------------EFTDS---EKSGAARINEMFSIARRN----APAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLD 297 (704)
Q Consensus 239 --------------~~~~~---~~~g~~~vr~lF~~Ak~~----~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld 297 (704)
++... ...+...+|.+.+.+... ...|++|||+|.|. ....|.||..|+
T Consensus 77 ~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt----------~~a~naLLK~LE 146 (620)
T PRK14948 77 KCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS----------TAAFNALLKTLE 146 (620)
T ss_pred ccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC----------HHHHHHHHHHHh
Confidence 11111 123455678887766532 24699999999884 236789999998
Q ss_pred CCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhc
Q 005285 298 GDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRT 376 (704)
Q Consensus 298 ~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t 376 (704)
.... .+++|++|+.++.+.+.+++ |+ ..+.|..++.++....+...+...... .+..+..++..+
T Consensus 147 ePp~-----------~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s 212 (620)
T PRK14948 147 EPPP-----------RVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRS 212 (620)
T ss_pred cCCc-----------CeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc
Confidence 6332 36788888888889889988 88 578999999888887777655543322 223467777776
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHH
Q 005285 377 VGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDV 411 (704)
Q Consensus 377 ~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~A 411 (704)
.| +.+++.++++...++ . ..|+.+++.+.
T Consensus 213 ~G-~lr~A~~lLeklsL~---~--~~It~e~V~~l 241 (620)
T PRK14948 213 QG-GLRDAESLLDQLSLL---P--GPITPEAVWDL 241 (620)
T ss_pred CC-CHHHHHHHHHHHHhc---c--CCCCHHHHHHH
Confidence 65 346666666654433 1 24776665543
No 127
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=1.6e-12 Score=142.21 Aligned_cols=211 Identities=14% Similarity=0.256 Sum_probs=141.5
Q ss_pred eecCcccHHHHHHHHH-HhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC-----EEEEeCccccchhhh
Q 005285 173 VVLGGDVWDLLDELMI-YMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP-----FVFASGAEFTDSEKS 246 (704)
Q Consensus 173 VvG~~~~k~~L~elv~-~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~-----~v~is~s~~~~~~~~ 246 (704)
+.+.++..+.+..++. ++++ ..|.++++|||||||||.+++.+++++.-+ ++++||.........
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~---------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i 89 (366)
T COG1474 19 LPHREEEINQLASFLAPALRG---------ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQV 89 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcC---------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHH
Confidence 5566654444444332 2333 356779999999999999999999887433 899999887654322
Q ss_pred hH-----------------HHHHHHHHHHhh-CCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccc
Q 005285 247 GA-----------------ARINEMFSIARR-NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRF 308 (704)
Q Consensus 247 g~-----------------~~vr~lF~~Ak~-~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~ 308 (704)
-. .....+++.... ....||+|||+|.|..+.. ..+..|+......
T Consensus 90 ~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~-------~~LY~L~r~~~~~--------- 153 (366)
T COG1474 90 LSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG-------EVLYSLLRAPGEN--------- 153 (366)
T ss_pred HHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc-------hHHHHHHhhcccc---------
Confidence 11 122333333333 4567999999999975421 4666666655443
Q ss_pred ccCccEEEEEEcCCCC---CCcccccCCCcc-ceeeeeCCCCHHHHHHHHHHHhcCC----CccccccHHHHHHh---cc
Q 005285 309 SLRQAVIFICATNRPD---ELDLEFVRPGRI-DRRLYIGLPDAKQRVQIFDVHSAGK----QLAEDVNFEELVFR---TV 377 (704)
Q Consensus 309 ~~~~~ViVIaaTN~p~---~LD~aLlRpgRf-d~~I~v~~Pd~~eR~~Il~~~l~~~----~l~~dvdl~~La~~---t~ 377 (704)
...|.+|+.+|..+ .+|+.+.+ +| ...|.|++++.+|...|++...... .+.++ -++.+|.. ..
T Consensus 154 --~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~-vl~lia~~~a~~~ 228 (366)
T COG1474 154 --KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDD-VLKLIAALVAAES 228 (366)
T ss_pred --ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCcc-HHHHHHHHHHHcC
Confidence 22488999998864 67888877 55 3469999999999999999776432 22222 13333322 22
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Q 005285 378 GFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414 (704)
Q Consensus 378 G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al~~ 414 (704)
| ..+---.+|+.|+..|.+++...++.+++..|.+.
T Consensus 229 G-DAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~ 264 (366)
T COG1474 229 G-DARKAIDILRRAGEIAEREGSRKVSEDHVREAQEE 264 (366)
T ss_pred c-cHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHH
Confidence 3 23334478999999999999999999999999544
No 128
>PRK06620 hypothetical protein; Validated
Probab=99.45 E-value=3.4e-12 Score=129.99 Aligned_cols=199 Identities=13% Similarity=0.203 Sum_probs=126.5
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCcc-CceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccc
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQF-VRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~-p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~ 242 (704)
..++.+|++.+..+.-......+..+...+ +..+ .+.++||||||+|||+|++++++..+..++. .....
T Consensus 9 ~~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~------~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~~- 79 (214)
T PRK06620 9 TSSKYHPDEFIVSSSNDQAYNIIKNWQCGF------GVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFFN- 79 (214)
T ss_pred CCCCCCchhhEecccHHHHHHHHHHHHHcc------ccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhhc-
Confidence 456779999987775555555554443332 2222 2689999999999999999999988764332 11110
Q ss_pred hhhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCC
Q 005285 243 SEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNR 322 (704)
Q Consensus 243 ~~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~ 322 (704)
...+ ....+|+|||||.+- ...+..+++.+.... ..+||+++..
T Consensus 80 ---------~~~~-----~~~d~lliDdi~~~~----------~~~lf~l~N~~~e~g------------~~ilits~~~ 123 (214)
T PRK06620 80 ---------EEIL-----EKYNAFIIEDIENWQ----------EPALLHIFNIINEKQ------------KYLLLTSSDK 123 (214)
T ss_pred ---------hhHH-----hcCCEEEEeccccch----------HHHHHHHHHHHHhcC------------CEEEEEcCCC
Confidence 0111 123689999999541 123444444443211 2477777655
Q ss_pred CCC--CcccccCCCccce--eeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 005285 323 PDE--LDLEFVRPGRIDR--RLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSVR 397 (704)
Q Consensus 323 p~~--LD~aLlRpgRfd~--~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r 397 (704)
|.. + ++|++ |+.. .+.+..|+.+.+.++++.++....+. ++..++.|+.+..| +.+.+.++++.....+..
T Consensus 124 p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~~~ 199 (214)
T PRK06620 124 SRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILENINYFALI 199 (214)
T ss_pred ccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHH
Confidence 554 5 77877 8853 79999999999999998877644332 23336677777654 677888888875544443
Q ss_pred hCCCcccHHHHHHHH
Q 005285 398 KGHSKIQQQDIVDVL 412 (704)
Q Consensus 398 ~~~~~It~~dl~~Al 412 (704)
.+ ..||...+.+++
T Consensus 200 ~~-~~it~~~~~~~l 213 (214)
T PRK06620 200 SK-RKITISLVKEVL 213 (214)
T ss_pred cC-CCCCHHHHHHHh
Confidence 33 568887776654
No 129
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.45 E-value=1.2e-12 Score=155.81 Aligned_cols=172 Identities=18% Similarity=0.209 Sum_probs=119.8
Q ss_pred ceecCcccHHHHHHHHHHhCCchhhhhcCCccCc-eEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccchh------
Q 005285 172 EVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVR-GVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE------ 244 (704)
Q Consensus 172 dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~-gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~~------ 244 (704)
.|+|++++++.+...+...+.... .-..|. .+||+||||||||++|+++|..++.+++.++++++.+..
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~----~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~li 530 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLG----NPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLI 530 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCC----CCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHh
Confidence 478888877777766654322100 012344 478999999999999999999999999999999876521
Q ss_pred -----hhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEE
Q 005285 245 -----KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICA 319 (704)
Q Consensus 245 -----~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaa 319 (704)
..|......+.+..+.+..+||||||+|.+. ....+.|+..||...-..+..+.....++++|+|
T Consensus 531 g~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~----------~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~T 600 (731)
T TIGR02639 531 GAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAH----------PDIYNILLQVMDYATLTDNNGRKADFRNVILIMT 600 (731)
T ss_pred cCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcC----------HHHHHHHHHhhccCeeecCCCcccCCCCCEEEEC
Confidence 0122223345555566677999999999873 2367788888876432222222233456889999
Q ss_pred cCCCC-------------------------CCcccccCCCccceeeeeCCCCHHHHHHHHHHHhc
Q 005285 320 TNRPD-------------------------ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA 359 (704)
Q Consensus 320 TN~p~-------------------------~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~ 359 (704)
||... .+.|.|+. |||.+|.|.+.+.++..+|++..+.
T Consensus 601 sn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~ 663 (731)
T TIGR02639 601 SNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVD 663 (731)
T ss_pred CCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 98742 14556665 9999999999999999999987765
No 130
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=3.7e-12 Score=147.44 Aligned_cols=214 Identities=17% Similarity=0.248 Sum_probs=142.3
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEE---------
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF--------- 234 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~--------- 234 (704)
+..+.+|++|+|++.+++.|+..+. + .+.+.++||+||||||||++|+++|+.+++.--.
T Consensus 9 kyRP~~f~eivGQe~i~~~L~~~i~---~--------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~ 77 (620)
T PRK14954 9 KYRPSKFADITAQEHITHTIQNSLR---M--------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEV 77 (620)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHH---c--------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccccc
Confidence 4667899999999988877666433 2 2567889999999999999999999988662100
Q ss_pred -EeCcc--------------ccch---hhhhHHHHHHHHHHHhh----CCCeEEEEccchhhhccCCCCChhHHHHHHHH
Q 005285 235 -ASGAE--------------FTDS---EKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEAL 292 (704)
Q Consensus 235 -is~s~--------------~~~~---~~~g~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~L 292 (704)
-.|.. +... ...+...++.+.+.+.. ....|++|||+|.+.. ...|.|
T Consensus 78 ~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~----------~a~naL 147 (620)
T PRK14954 78 TEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST----------AAFNAF 147 (620)
T ss_pred CCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH----------HHHHHH
Confidence 01111 1111 11123456666555532 2346999999998842 346889
Q ss_pred HHHhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCc-cccccHHH
Q 005285 293 IAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQL-AEDVNFEE 371 (704)
Q Consensus 293 L~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l-~~dvdl~~ 371 (704)
+..|+..... +++|++|+.+..|.+.+++ |+ ..++|..++.++....+...+..... .++..+..
T Consensus 148 LK~LEePp~~-----------tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~ 213 (620)
T PRK14954 148 LKTLEEPPPH-----------AIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQL 213 (620)
T ss_pred HHHHhCCCCC-----------eEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 9988874432 5666667777888888888 77 58999999999988888776654332 22335677
Q ss_pred HHHhccCCCHHHHHHHHHHHHHHHHH-hCCCcccHHHHHHHHH
Q 005285 372 LVFRTVGFSGADIRNLVNESGIMSVR-KGHSKIQQQDIVDVLD 413 (704)
Q Consensus 372 La~~t~G~sgadL~~Lv~eA~~~A~r-~~~~~It~~dl~~Al~ 413 (704)
|+..+.| +.+++.+.++....++.. .....|+.+++.+.+.
T Consensus 214 La~~s~G-dlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv~ 255 (620)
T PRK14954 214 IARKAQG-SMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELLN 255 (620)
T ss_pred HHHHhCC-CHHHHHHHHHHHHHhccccccCCccCHHHHHHHHc
Confidence 7777654 555666666655544421 1245688888877663
No 131
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=2.9e-12 Score=148.83 Aligned_cols=205 Identities=20% Similarity=0.252 Sum_probs=139.3
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCE-----------
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPF----------- 232 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~----------- 232 (704)
+..+.+|+||+|++.+++.|+..+.. . +.+..+|||||||+|||++|+++|+.+++..
T Consensus 9 kyRP~~~~eiiGq~~~~~~L~~~i~~---~--------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c 77 (585)
T PRK14950 9 KWRSQTFAELVGQEHVVQTLRNAIAE---G--------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTC 77 (585)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHh---C--------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccC
Confidence 56778999999999988877665542 1 3567789999999999999999999875321
Q ss_pred --------------EEEeCccccchhhhhHHHHHHHHHHHhh----CCCeEEEEccchhhhccCCCCChhHHHHHHHHHH
Q 005285 233 --------------VFASGAEFTDSEKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIA 294 (704)
Q Consensus 233 --------------v~is~s~~~~~~~~g~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~ 294 (704)
+.++.+ ...+...++.+.+.+.. ....||||||+|.|.. ..+|.|+.
T Consensus 78 ~~c~~i~~~~~~d~~~i~~~-----~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~----------~a~naLLk 142 (585)
T PRK14950 78 EMCRAIAEGSAVDVIEMDAA-----SHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST----------AAFNALLK 142 (585)
T ss_pred HHHHHHhcCCCCeEEEEecc-----ccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH----------HHHHHHHH
Confidence 112211 01122334554443332 2346999999998842 35788888
Q ss_pred HhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHH
Q 005285 295 QLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELV 373 (704)
Q Consensus 295 ~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La 373 (704)
.|+.... .+++|++|+..+.+.+.+++ |+ ..+.|..++..+...++...+....+. ++..+..|+
T Consensus 143 ~LEepp~-----------~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La 208 (585)
T PRK14950 143 TLEEPPP-----------HAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIA 208 (585)
T ss_pred HHhcCCC-----------CeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 8876432 25677777778888888877 77 468999999999998888776554432 223466777
Q ss_pred HhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHH
Q 005285 374 FRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLD 413 (704)
Q Consensus 374 ~~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al~ 413 (704)
..+.| +.+++.+.++..+.+ +...|+.+++.+.+.
T Consensus 209 ~~s~G-dlr~al~~LekL~~y----~~~~It~e~V~~ll~ 243 (585)
T PRK14950 209 RAATG-SMRDAENLLQQLATT----YGGEISLSQVQSLLG 243 (585)
T ss_pred HHcCC-CHHHHHHHHHHHHHh----cCCCCCHHHHHHHhc
Confidence 76655 677777777754433 234688888766543
No 132
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.43 E-value=2.5e-12 Score=131.54 Aligned_cols=201 Identities=20% Similarity=0.291 Sum_probs=120.0
Q ss_pred CCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc-----CCCEEEEeCccc
Q 005285 166 TKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-----GLPFVFASGAEF 240 (704)
Q Consensus 166 ~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~-----g~~~v~is~s~~ 240 (704)
++.||++.+-.+.-+..+..+.....++. .....++||||+|+|||+|++|++++. +..++++++.+|
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~~~~-------~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f 75 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAENPG-------ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEF 75 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHHSTT-------TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHH
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHhcCC-------CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHH
Confidence 56789998766655555555544444441 123458999999999999999998864 678999999998
Q ss_pred cchhhhhH--HHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEE
Q 005285 241 TDSEKSGA--ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFIC 318 (704)
Q Consensus 241 ~~~~~~g~--~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIa 318 (704)
........ ..+..+.+..+ ...+|+||++|.+.++ ......+..+++.+.. .. .-+|+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~~-----~~~q~~lf~l~n~~~~---~~---------k~li~t 136 (219)
T PF00308_consen 76 IREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAGK-----QRTQEELFHLFNRLIE---SG---------KQLILT 136 (219)
T ss_dssp HHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTTH-----HHHHHHHHHHHHHHHH---TT---------SEEEEE
T ss_pred HHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcCc-----hHHHHHHHHHHHHHHh---hC---------CeEEEE
Confidence 77643221 12223222332 3469999999999642 1222333344443322 11 235555
Q ss_pred EcCCCCCC---cccccCCCccce--eeeeCCCCHHHHHHHHHHHhcCCCcccccc-HHHHHHhccCCCHHHHHHHHHHHH
Q 005285 319 ATNRPDEL---DLEFVRPGRIDR--RLYIGLPDAKQRVQIFDVHSAGKQLAEDVN-FEELVFRTVGFSGADIRNLVNESG 392 (704)
Q Consensus 319 aTN~p~~L---D~aLlRpgRfd~--~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvd-l~~La~~t~G~sgadL~~Lv~eA~ 392 (704)
+...|..+ ++.|.+ ||.. .+.+..|+.+.|.+|++..+....+.-+.+ +..|+.+. .-+.++|..+++.-.
T Consensus 137 s~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~-~~~~r~L~~~l~~l~ 213 (219)
T PF00308_consen 137 SDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRF-RRDVRELEGALNRLD 213 (219)
T ss_dssp ESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHT-TSSHHHHHHHHHHHH
T ss_pred eCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhh-cCCHHHHHHHHHHHH
Confidence 55556654 566666 8854 889999999999999998876655443333 45556553 347788888887665
Q ss_pred HHH
Q 005285 393 IMS 395 (704)
Q Consensus 393 ~~A 395 (704)
.++
T Consensus 214 ~~~ 216 (219)
T PF00308_consen 214 AYA 216 (219)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
No 133
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.43 E-value=1.2e-12 Score=147.16 Aligned_cols=207 Identities=20% Similarity=0.267 Sum_probs=155.0
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC-------EEE--
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP-------FVF-- 234 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~-------~v~-- 234 (704)
++++.+|+||+|++.+...|+..+..- +...+.||+||.|||||++||-+|+.+++. +..
T Consensus 9 KyRP~~F~evvGQe~v~~~L~nal~~~-----------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~ 77 (515)
T COG2812 9 KYRPKTFDDVVGQEHVVKTLSNALENG-----------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCI 77 (515)
T ss_pred HhCcccHHHhcccHHHHHHHHHHHHhC-----------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhh
Confidence 467789999999999988888776643 345789999999999999999999987653 111
Q ss_pred ----EeC---ccccch---hhhhHHHHHHHHHHHhh----CCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCc
Q 005285 235 ----ASG---AEFTDS---EKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDK 300 (704)
Q Consensus 235 ----is~---s~~~~~---~~~g~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~ 300 (704)
++. .++.+. ...|...+|.+-+.+.- ....|.+|||+|.|. .+.+|.||..++.-.
T Consensus 78 ~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS----------~~afNALLKTLEEPP 147 (515)
T COG2812 78 SCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS----------KQAFNALLKTLEEPP 147 (515)
T ss_pred hhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh----------HHHHHHHhcccccCc
Confidence 111 222222 12345567887777653 335799999999984 357899999998743
Q ss_pred ccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcccccc-HHHHHHhccCC
Q 005285 301 ERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVN-FEELVFRTVGF 379 (704)
Q Consensus 301 ~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvd-l~~La~~t~G~ 379 (704)
..|++|.||..++.+++.+++ |+ .++.|..-+.++....|...+.+..+..+.+ +..+++...|
T Consensus 148 -----------~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G- 212 (515)
T COG2812 148 -----------SHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG- 212 (515)
T ss_pred -----------cCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-
Confidence 459999999999999999999 88 5688999999999999998888777665444 5666766665
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCcccHHHHHH
Q 005285 380 SGADIRNLVNESGIMSVRKGHSKIQQQDIVD 410 (704)
Q Consensus 380 sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~ 410 (704)
|.+|..+++..|..... ..|+.+++.+
T Consensus 213 s~RDalslLDq~i~~~~----~~It~~~v~~ 239 (515)
T COG2812 213 SLRDALSLLDQAIAFGE----GEITLESVRD 239 (515)
T ss_pred ChhhHHHHHHHHHHccC----CcccHHHHHH
Confidence 78999999998876642 3455555443
No 134
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.43 E-value=3.4e-12 Score=138.22 Aligned_cols=227 Identities=16% Similarity=0.216 Sum_probs=142.3
Q ss_pred CCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcC-------CCEEEEeC
Q 005285 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESG-------LPFVFASG 237 (704)
Q Consensus 165 ~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g-------~~~v~is~ 237 (704)
.....|.+|+|++++|..|. ..+.+| ...||||.||+|||||++||+++.-+. .||. ...
T Consensus 11 ~~~~pf~~ivGq~~~k~al~---~~~~~p---------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p 77 (350)
T CHL00081 11 RPVFPFTAIVGQEEMKLALI---LNVIDP---------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHP 77 (350)
T ss_pred CCCCCHHHHhChHHHHHHHH---HhccCC---------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCC
Confidence 34567999999998876554 345555 346899999999999999999977542 2332 000
Q ss_pred cc--------------------------ccch-hhhhHHH------HHHHHHHHh---------hCCCeEEEEccchhhh
Q 005285 238 AE--------------------------FTDS-EKSGAAR------INEMFSIAR---------RNAPAFVFVDEIDAIA 275 (704)
Q Consensus 238 s~--------------------------~~~~-~~~g~~~------vr~lF~~Ak---------~~~P~ILfIDEiDal~ 275 (704)
.. +... .+....+ +...|...+ +....+|||||++.+.
T Consensus 78 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~ 157 (350)
T CHL00081 78 SDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD 157 (350)
T ss_pred CChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCC
Confidence 00 0000 0001111 112222221 1123699999999985
Q ss_pred ccCCCCChhHHHHHHHHHHHhcCCccc---CCccccccCccEEEEEEcCCCC-CCcccccCCCccceeeeeCCCC-HHHH
Q 005285 276 GRHARKDPRRRATFEALIAQLDGDKER---TGIDRFSLRQAVIFICATNRPD-ELDLEFVRPGRIDRRLYIGLPD-AKQR 350 (704)
Q Consensus 276 ~~~~~~~~e~~~~ln~LL~~ld~~~~~---~~~~~~~~~~~ViVIaaTN~p~-~LD~aLlRpgRfd~~I~v~~Pd-~~eR 350 (704)
. .+.+.|+..|+..... .|. .......+++|+|.|..+ .++++++. ||..++.+..|+ .+.+
T Consensus 158 ~----------~~Q~~LLeam~e~~~~ier~G~-s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e 224 (350)
T CHL00081 158 D----------HLVDILLDSAASGWNTVEREGI-SIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPELR 224 (350)
T ss_pred H----------HHHHHHHHHHHhCCeEEeeCCe-eeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHHH
Confidence 3 3566788777642211 121 123345688888888655 68999999 999999999997 5999
Q ss_pred HHHHHHHhcCC--C-----------------------------ccccc--cHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 005285 351 VQIFDVHSAGK--Q-----------------------------LAEDV--NFEELVFRTVGFSGADIRNLVNESGIMSVR 397 (704)
Q Consensus 351 ~~Il~~~l~~~--~-----------------------------l~~dv--dl~~La~~t~G~sgadL~~Lv~eA~~~A~r 397 (704)
.+|++...... + +.+++ -+.+++..+.--|++---.+++-|...|+-
T Consensus 225 ~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal 304 (350)
T CHL00081 225 VKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAF 304 (350)
T ss_pred HHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHH
Confidence 99998653211 0 00000 022334334333555556778888888999
Q ss_pred hCCCcccHHHHHHHHHHHHH
Q 005285 398 KGHSKIQQQDIVDVLDKQLL 417 (704)
Q Consensus 398 ~~~~~It~~dl~~Al~~~~~ 417 (704)
+|+..|+.+|+..+..-++.
T Consensus 305 ~GR~~V~pdDv~~~a~~vL~ 324 (350)
T CHL00081 305 EGRTEVTPKDIFKVITLCLR 324 (350)
T ss_pred cCCCCCCHHHHHHHHHHHHH
Confidence 99999999999988887664
No 135
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.42 E-value=2.3e-12 Score=137.61 Aligned_cols=143 Identities=15% Similarity=0.131 Sum_probs=99.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccch-hhhhHHH------------HHHHHHHHhhCCCeEEEEcc
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-EKSGAAR------------INEMFSIARRNAPAFVFVDE 270 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~-~~~g~~~------------vr~lF~~Ak~~~P~ILfIDE 270 (704)
.++|||.||||||||++|+++|..+|.|++.+++...... ...|... ....+..|.. .+++|++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEech
Confidence 4679999999999999999999999999999998876554 1111110 1122334433 468999999
Q ss_pred chhhhccCCCCChhHHHHHHHHHHHhcC--Ccc-cCCccccccCccEEEEEEcCCCC------------CCcccccCCCc
Q 005285 271 IDAIAGRHARKDPRRRATFEALIAQLDG--DKE-RTGIDRFSLRQAVIFICATNRPD------------ELDLEFVRPGR 335 (704)
Q Consensus 271 iDal~~~~~~~~~e~~~~ln~LL~~ld~--~~~-~~~~~~~~~~~~ViVIaaTN~p~------------~LD~aLlRpgR 335 (704)
+|...+ . +++.|...|+. ... ......+....++.||||+|..+ .++.|++. |
T Consensus 143 in~a~p-------~---~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD--R 210 (327)
T TIGR01650 143 YDAGRP-------D---VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD--R 210 (327)
T ss_pred hhccCH-------H---HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh--h
Confidence 997732 2 34444444442 110 01112233455799999999865 36889998 9
Q ss_pred cceeeeeCCCCHHHHHHHHHHHhc
Q 005285 336 IDRRLYIGLPDAKQRVQIFDVHSA 359 (704)
Q Consensus 336 fd~~I~v~~Pd~~eR~~Il~~~l~ 359 (704)
|-..+.++.|+.+.-.+|+.....
T Consensus 211 F~i~~~~~Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 211 WSIVTTLNYLEHDNEAAIVLAKAK 234 (327)
T ss_pred eeeEeeCCCCCHHHHHHHHHhhcc
Confidence 987889999999999999987654
No 136
>PRK05642 DNA replication initiation factor; Validated
Probab=99.41 E-value=1.2e-11 Score=127.83 Aligned_cols=212 Identities=16% Similarity=0.199 Sum_probs=129.8
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccc
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEF 240 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~ 240 (704)
-.+..+|++.+.... ...+..+..+.... +.....+++|+||+|||||+|++|+++++ +..+++++..++
T Consensus 12 ~~~~~tfdnF~~~~~-~~a~~~~~~~~~~~------~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~ 84 (234)
T PRK05642 12 LRDDATFANYYPGAN-AAALGYVERLCEAD------AGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAEL 84 (234)
T ss_pred CCCcccccccCcCCh-HHHHHHHHHHhhcc------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHH
Confidence 355678999874432 22222222222211 11134679999999999999999998754 678889988877
Q ss_pred cchhhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEc
Q 005285 241 TDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (704)
Q Consensus 241 ~~~~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (704)
.... ..+.+..+.. .+|+|||++.+.++ ......+-.+++.+.. . ...++++++
T Consensus 85 ~~~~-------~~~~~~~~~~--d~LiiDDi~~~~~~-----~~~~~~Lf~l~n~~~~---~---------g~~ilits~ 138 (234)
T PRK05642 85 LDRG-------PELLDNLEQY--ELVCLDDLDVIAGK-----ADWEEALFHLFNRLRD---S---------GRRLLLAAS 138 (234)
T ss_pred Hhhh-------HHHHHhhhhC--CEEEEechhhhcCC-----hHHHHHHHHHHHHHHh---c---------CCEEEEeCC
Confidence 6531 1222223222 58999999988533 1222334444444322 1 124666665
Q ss_pred CCCCC---CcccccCCCccc--eeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHH
Q 005285 321 NRPDE---LDLEFVRPGRID--RRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIM 394 (704)
Q Consensus 321 N~p~~---LD~aLlRpgRfd--~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~Lv~eA~~~ 394 (704)
..|.. ..+.|++ ||. ..+.+..|+.++|.++++..+....+. ++.-+..|+++..+ +.+.+.++++.-...
T Consensus 139 ~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~ 215 (234)
T PRK05642 139 KSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTR-SMSALFDLLERLDQA 215 (234)
T ss_pred CCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence 55543 3678888 884 577889999999999999655443332 22335667766544 788888888877654
Q ss_pred HHHhCCCcccHHHHHHHH
Q 005285 395 SVRKGHSKIQQQDIVDVL 412 (704)
Q Consensus 395 A~r~~~~~It~~dl~~Al 412 (704)
+.. ....||..-+.+++
T Consensus 216 ~l~-~~~~it~~~~~~~L 232 (234)
T PRK05642 216 SLQ-AQRKLTIPFLKETL 232 (234)
T ss_pred HHH-cCCcCCHHHHHHHh
Confidence 443 33558877666554
No 137
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.41 E-value=8.6e-13 Score=144.24 Aligned_cols=181 Identities=25% Similarity=0.335 Sum_probs=128.1
Q ss_pred ceecCcccHHHHHHHHHH-hCCchhhhhcC-CccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccch-h-h-h
Q 005285 172 EVVLGGDVWDLLDELMIY-MGNPMQYYERG-VQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-E-K-S 246 (704)
Q Consensus 172 dVvG~~~~k~~L~elv~~-l~~p~~~~~~g-~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~-~-~-~ 246 (704)
.|+|++++|+.+...+.. .+......... -..|+++||+||||||||++|+++|+.++.||+.+++++|.+. + + .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 488999999888766532 11110000000 1136899999999999999999999999999999999998874 2 3 3
Q ss_pred hHHHHHHHHHHHh-------------------------------------------------------------------
Q 005285 247 GAARINEMFSIAR------------------------------------------------------------------- 259 (704)
Q Consensus 247 g~~~vr~lF~~Ak------------------------------------------------------------------- 259 (704)
....++.+|+.|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 3566677766661
Q ss_pred -----------------------------------------------------------------------hCCCeEEEE
Q 005285 260 -----------------------------------------------------------------------RNAPAFVFV 268 (704)
Q Consensus 260 -----------------------------------------------------------------------~~~P~ILfI 268 (704)
...-.||||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 012359999
Q ss_pred ccchhhhccCC--CCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEc----CCCCCCcccccCCCccceeeee
Q 005285 269 DEIDAIAGRHA--RKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT----NRPDELDLEFVRPGRIDRRLYI 342 (704)
Q Consensus 269 DEiDal~~~~~--~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT----N~p~~LD~aLlRpgRfd~~I~v 342 (704)
||||.|+.+.. +.+-..+.+...||..++|...+.... .-...+|++||+. ..|..|-|.|. |||...+.+
T Consensus 256 DEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~-~i~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L 332 (443)
T PRK05201 256 DEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYG-MVKTDHILFIASGAFHVSKPSDLIPELQ--GRFPIRVEL 332 (443)
T ss_pred EcchhhcccCCCCCCCCCccchhcccccccccceeeecce-eEECCceeEEecCCcCCCChhhccHHHh--CccceEEEC
Confidence 99999986542 334555678899999999965443211 1234568888875 33556667776 599999999
Q ss_pred CCCCHHHHHHHHH
Q 005285 343 GLPDAKQRVQIFD 355 (704)
Q Consensus 343 ~~Pd~~eR~~Il~ 355 (704)
..++.+...+||.
T Consensus 333 ~~L~~~dL~~ILt 345 (443)
T PRK05201 333 DALTEEDFVRILT 345 (443)
T ss_pred CCCCHHHHHHHhc
Confidence 9999999999984
No 138
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.41 E-value=5.9e-12 Score=128.61 Aligned_cols=193 Identities=22% Similarity=0.306 Sum_probs=133.6
Q ss_pred cCCCccccceecCcccHHHHHHHHH-HhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCcc
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMI-YMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAE 239 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~-~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~ 239 (704)
....+.+++++|.+..|+.|.+-.. |+.. .+..++||+|++|||||+++||+..+. |..++.++..+
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G---------~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~ 90 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTEQFLQG---------LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKED 90 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHHcC---------CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHH
Confidence 3457899999999998876665543 3333 367899999999999999999998865 67788887666
Q ss_pred ccchhhhhHHHHHHHHHHHhh-CCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEE
Q 005285 240 FTDSEKSGAARINEMFSIARR-NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFIC 318 (704)
Q Consensus 240 ~~~~~~~g~~~vr~lF~~Ak~-~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIa 318 (704)
+.. +-.+++..+. ..+-|||+|++- + . . .+.....|-..|+|.... .+++|++.+
T Consensus 91 L~~--------l~~l~~~l~~~~~kFIlf~DDLs-F-e----~---~d~~yk~LKs~LeGgle~-------~P~NvliyA 146 (249)
T PF05673_consen 91 LGD--------LPELLDLLRDRPYKFILFCDDLS-F-E----E---GDTEYKALKSVLEGGLEA-------RPDNVLIYA 146 (249)
T ss_pred hcc--------HHHHHHHHhcCCCCEEEEecCCC-C-C----C---CcHHHHHHHHHhcCcccc-------CCCcEEEEE
Confidence 554 4455555543 356899999864 2 1 1 223446777778875432 356799999
Q ss_pred EcCCCCCCccccc----------CC-----------CccceeeeeCCCCHHHHHHHHHHHhcCCCcccc-ccH----HHH
Q 005285 319 ATNRPDELDLEFV----------RP-----------GRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAED-VNF----EEL 372 (704)
Q Consensus 319 aTN~p~~LD~aLl----------Rp-----------gRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~d-vdl----~~L 372 (704)
|+|+-..++..+. .| .||...|.|..|+.++-.+|++.++....+.-+ .++ ...
T Consensus 147 TSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~w 226 (249)
T PF05673_consen 147 TSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQW 226 (249)
T ss_pred ecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 9999654433211 11 489999999999999999999999875554432 122 233
Q ss_pred HHhccCCCHHHHHHHHH
Q 005285 373 VFRTVGFSGADIRNLVN 389 (704)
Q Consensus 373 a~~t~G~sgadL~~Lv~ 389 (704)
|....|.||+--.+.++
T Consensus 227 a~~rg~RSGRtA~QF~~ 243 (249)
T PF05673_consen 227 ALRRGGRSGRTARQFID 243 (249)
T ss_pred HHHcCCCCHHHHHHHHH
Confidence 44456667766555554
No 139
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.40 E-value=1.2e-12 Score=142.98 Aligned_cols=181 Identities=22% Similarity=0.314 Sum_probs=126.8
Q ss_pred ceecCcccHHHHHHHHHH-hCCchhhhhc-CCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccch--hh-h
Q 005285 172 EVVLGGDVWDLLDELMIY-MGNPMQYYER-GVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS--EK-S 246 (704)
Q Consensus 172 dVvG~~~~k~~L~elv~~-l~~p~~~~~~-g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~--~~-~ 246 (704)
-|+|++++|+.+...+.. .+.......+ .-..|+++||+||||||||++|+++|..++.||+.+++..+.+. .+ .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 478999998887665542 1111100011 12357999999999999999999999999999999999888753 23 3
Q ss_pred hHHHHHHHHHHHh-------------------------------------------------------------------
Q 005285 247 GAARINEMFSIAR------------------------------------------------------------------- 259 (704)
Q Consensus 247 g~~~vr~lF~~Ak------------------------------------------------------------------- 259 (704)
....++.+|..|.
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 4455666655540
Q ss_pred ------------------------------------------------------------------------hCCCeEEE
Q 005285 260 ------------------------------------------------------------------------RNAPAFVF 267 (704)
Q Consensus 260 ------------------------------------------------------------------------~~~P~ILf 267 (704)
...-.|||
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 01235999
Q ss_pred EccchhhhccCC--CCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcC----CCCCCcccccCCCccceeee
Q 005285 268 VDEIDAIAGRHA--RKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATN----RPDELDLEFVRPGRIDRRLY 341 (704)
Q Consensus 268 IDEiDal~~~~~--~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN----~p~~LD~aLlRpgRfd~~I~ 341 (704)
|||||.++.+.. +.+-....+.+.||..++|...+.... .....+|++|++.. .|..|=|.|. |||...+.
T Consensus 253 iDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~-~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~ 329 (441)
T TIGR00390 253 IDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYG-MVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIRVE 329 (441)
T ss_pred EEchhhhcccCCCCCCCCCccchhccccccccCceeeecce-eEECCceeEEecCCcCCCChhhccHHHh--CccceEEE
Confidence 999999986542 334556678899999999965543211 22345688888763 3555555565 59999999
Q ss_pred eCCCCHHHHHHHHH
Q 005285 342 IGLPDAKQRVQIFD 355 (704)
Q Consensus 342 v~~Pd~~eR~~Il~ 355 (704)
+..++.+....||.
T Consensus 330 L~~L~~edL~rILt 343 (441)
T TIGR00390 330 LQALTTDDFERILT 343 (441)
T ss_pred CCCCCHHHHHHHhc
Confidence 99999999999874
No 140
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.39 E-value=1.7e-11 Score=134.19 Aligned_cols=223 Identities=18% Similarity=0.258 Sum_probs=151.2
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc-----CCCEEEEeCc
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-----GLPFVFASGA 238 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~-----g~~~v~is~s 238 (704)
-.++.+|++.+..+.-.........+-.+|. .....++||||.|.|||+|++|+++++ +..+++++..
T Consensus 80 l~~~ytFdnFv~g~~N~~A~aa~~~va~~~g-------~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se 152 (408)
T COG0593 80 LNPKYTFDNFVVGPSNRLAYAAAKAVAENPG-------GAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSE 152 (408)
T ss_pred CCCCCchhheeeCCchHHHHHHHHHHHhccC-------CcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHH
Confidence 4577899999988876666666666666652 245569999999999999999998875 3358888888
Q ss_pred cccchhhhh-HHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEE
Q 005285 239 EFTDSEKSG-AARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (704)
Q Consensus 239 ~~~~~~~~g-~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (704)
+|....... ...-.+-|+.-. +-.+++||+|+.+.++.. ...+.-.++|.+... .+-+|+
T Consensus 153 ~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~~-~qeefFh~FN~l~~~----------------~kqIvl 213 (408)
T COG0593 153 DFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKER-TQEEFFHTFNALLEN----------------GKQIVL 213 (408)
T ss_pred HHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCChh-HHHHHHHHHHHHHhc----------------CCEEEE
Confidence 887653211 111223344333 336899999999975421 122333344444321 112555
Q ss_pred EEcCCCCCC---cccccCCCccce--eeeeCCCCHHHHHHHHHHHhcCCCccccc-cHHHHHHhccCCCHHHHHHHHHHH
Q 005285 318 CATNRPDEL---DLEFVRPGRIDR--RLYIGLPDAKQRVQIFDVHSAGKQLAEDV-NFEELVFRTVGFSGADIRNLVNES 391 (704)
Q Consensus 318 aaTN~p~~L---D~aLlRpgRfd~--~I~v~~Pd~~eR~~Il~~~l~~~~l~~dv-dl~~La~~t~G~sgadL~~Lv~eA 391 (704)
.+...|..+ .+.|.+ ||.. .+.+.+||.+.|.+||+.......+.-+- -+..++.+. .-+.++|..+++..
T Consensus 214 tsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~-~~nvReLegaL~~l 290 (408)
T COG0593 214 TSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRL-DRNVRELEGALNRL 290 (408)
T ss_pred EcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh-hccHHHHHHHHHHH
Confidence 555556654 477877 9966 78899999999999999866554443222 245566553 34688899999888
Q ss_pred HHHHHHhCCCcccHHHHHHHHHHHH
Q 005285 392 GIMSVRKGHSKIQQQDIVDVLDKQL 416 (704)
Q Consensus 392 ~~~A~r~~~~~It~~dl~~Al~~~~ 416 (704)
...|...++ .||.+.+.+++....
T Consensus 291 ~~~a~~~~~-~iTi~~v~e~L~~~~ 314 (408)
T COG0593 291 DAFALFTKR-AITIDLVKEILKDLL 314 (408)
T ss_pred HHHHHhcCc-cCcHHHHHHHHHHhh
Confidence 888876665 799999999888764
No 141
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.38 E-value=1.6e-11 Score=143.03 Aligned_cols=223 Identities=19% Similarity=0.232 Sum_probs=134.0
Q ss_pred CCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc----------CCCEEE
Q 005285 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES----------GLPFVF 234 (704)
Q Consensus 165 ~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~----------g~~~v~ 234 (704)
..+.+|++++|++...+.+. ..+..+ .+.+++|+||||||||++|+++++.. +.+|+.
T Consensus 148 ~rp~~~~~iiGqs~~~~~l~---~~ia~~---------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~ 215 (615)
T TIGR02903 148 LRPRAFSEIVGQERAIKALL---AKVASP---------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVE 215 (615)
T ss_pred cCcCcHHhceeCcHHHHHHH---HHHhcC---------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEE
Confidence 45689999999987665443 333222 35679999999999999999998654 468999
Q ss_pred EeCccccchh--------hhhH----HHHHHHHHH----------HhhCCCeEEEEccchhhhccCCCCChhHHHHHHHH
Q 005285 235 ASGAEFTDSE--------KSGA----ARINEMFSI----------ARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEAL 292 (704)
Q Consensus 235 is~s~~~~~~--------~~g~----~~vr~lF~~----------Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~L 292 (704)
++|..+.... +... ...+..+.. .......+|||||++.|-. ...+.|
T Consensus 216 i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~----------~~Q~~L 285 (615)
T TIGR02903 216 VDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDP----------LLQNKL 285 (615)
T ss_pred EechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCH----------HHHHHH
Confidence 9987753110 0000 000111110 0012346999999998832 234555
Q ss_pred HHHhcCCcccCCccc-----------------cccCccEEEEEE-cCCCCCCcccccCCCccceeeeeCCCCHHHHHHHH
Q 005285 293 IAQLDGDKERTGIDR-----------------FSLRQAVIFICA-TNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIF 354 (704)
Q Consensus 293 L~~ld~~~~~~~~~~-----------------~~~~~~ViVIaa-TN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il 354 (704)
+..|+.....-..+. ......+++|++ |+.++.++++|++ ||. .+.+++++.+++.+|+
T Consensus 286 l~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~Il 362 (615)
T TIGR02903 286 LKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALIV 362 (615)
T ss_pred HHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHHH
Confidence 555543210000000 001223566655 5668889999988 996 6789999999999999
Q ss_pred HHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHh--------CCCcccHHHHHHHHHH
Q 005285 355 DVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSVRK--------GHSKIQQQDIVDVLDK 414 (704)
Q Consensus 355 ~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r~--------~~~~It~~dl~~Al~~ 414 (704)
+..+...... .+.-+..|+..+. .++..-+++..+...+..+ +...|+.+|+.+++..
T Consensus 363 ~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~ 429 (615)
T TIGR02903 363 LNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQI 429 (615)
T ss_pred HHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCC
Confidence 9887754321 2223455555543 4555555665554443221 2236899998888764
No 142
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.37 E-value=9.4e-12 Score=134.64 Aligned_cols=224 Identities=20% Similarity=0.240 Sum_probs=138.8
Q ss_pred cccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc-------CCCEE--------
Q 005285 169 MYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-------GLPFV-------- 233 (704)
Q Consensus 169 ~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~-------g~~~v-------- 233 (704)
.|..|+|++++|..|. ..+.+| ...+++|.|+||||||++++++++-. +.|+-
T Consensus 2 pf~~ivgq~~~~~al~---~~~~~~---------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 2 PFTAIVGQDEMKLALL---LNVIDP---------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred CccccccHHHHHHHHH---HHhcCC---------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 4889999998875543 233344 24579999999999999999999765 33221
Q ss_pred -EEeCcc----------------ccch-hhh------hHHHHHHH-------HHH--HhhCCCeEEEEccchhhhccCCC
Q 005285 234 -FASGAE----------------FTDS-EKS------GAARINEM-------FSI--ARRNAPAFVFVDEIDAIAGRHAR 280 (704)
Q Consensus 234 -~is~s~----------------~~~~-~~~------g~~~vr~l-------F~~--Ak~~~P~ILfIDEiDal~~~~~~ 280 (704)
.-+|.. |.+. .+. |...+... |.. ..+....+|||||++.+..
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~---- 145 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLED---- 145 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCH----
Confidence 000000 0111 000 11111111 010 0011236999999999842
Q ss_pred CChhHHHHHHHHHHHhcCCc---ccCCccccccCccEEEEEEcCCCC-CCcccccCCCccceeeeeCCCCH-HHHHHHHH
Q 005285 281 KDPRRRATFEALIAQLDGDK---ERTGIDRFSLRQAVIFICATNRPD-ELDLEFVRPGRIDRRLYIGLPDA-KQRVQIFD 355 (704)
Q Consensus 281 ~~~e~~~~ln~LL~~ld~~~---~~~~~~~~~~~~~ViVIaaTN~p~-~LD~aLlRpgRfd~~I~v~~Pd~-~eR~~Il~ 355 (704)
.+++.|+..|+... ...| ........+++|+++|..+ .++++++. ||..++.++.|+. ++|.+|++
T Consensus 146 ------~~Q~~Ll~~l~~g~~~v~r~G-~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~eIL~ 216 (337)
T TIGR02030 146 ------HLVDVLLDVAASGWNVVEREG-ISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVEIVE 216 (337)
T ss_pred ------HHHHHHHHHHHhCCeEEEECC-EEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHHHHH
Confidence 36677777776432 1111 1122334688899988655 68999999 9999999999975 88999998
Q ss_pred HHhcCC-------------------------------Cccccc--cHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCc
Q 005285 356 VHSAGK-------------------------------QLAEDV--NFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSK 402 (704)
Q Consensus 356 ~~l~~~-------------------------------~l~~dv--dl~~La~~t~G~sgadL~~Lv~eA~~~A~r~~~~~ 402 (704)
...... .+.+.+ -+..++..+..-|.+---.+++-|...|+.+|+..
T Consensus 217 ~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~ 296 (337)
T TIGR02030 217 RRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEGRTE 296 (337)
T ss_pred hhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcCCCC
Confidence 743210 001000 02334444443355666678888999999999999
Q ss_pred ccHHHHHHHHHHHHH
Q 005285 403 IQQQDIVDVLDKQLL 417 (704)
Q Consensus 403 It~~dl~~Al~~~~~ 417 (704)
|+.+|+..+..-++.
T Consensus 297 V~~dDv~~~a~~vL~ 311 (337)
T TIGR02030 297 VTVDDIRRVAVLALR 311 (337)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999998887663
No 143
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=1.8e-11 Score=142.27 Aligned_cols=204 Identities=18% Similarity=0.260 Sum_probs=139.4
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC------------
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP------------ 231 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~------------ 231 (704)
+..+.+|+||+|++.+++.|...+. + .+.|..+|||||+|+|||++|+++|+.+.+.
T Consensus 10 kyRP~~f~~viGq~~~~~~L~~~i~---~--------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C 78 (614)
T PRK14971 10 KYRPSTFESVVGQEALTTTLKNAIA---T--------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNEC 78 (614)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHH---c--------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcc
Confidence 5567899999999988777665543 2 2467889999999999999999999987532
Q ss_pred -------------EEEEeCccccchhhhhHHHHHHHHHHHhhC----CCeEEEEccchhhhccCCCCChhHHHHHHHHHH
Q 005285 232 -------------FVFASGAEFTDSEKSGAARINEMFSIARRN----APAFVFVDEIDAIAGRHARKDPRRRATFEALIA 294 (704)
Q Consensus 232 -------------~v~is~s~~~~~~~~g~~~vr~lF~~Ak~~----~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~ 294 (704)
++.+++.+ ..+...++.+.+.+... ...|++|||+|.+. ....+.|+.
T Consensus 79 ~sC~~~~~~~~~n~~~ld~~~-----~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls----------~~a~naLLK 143 (614)
T PRK14971 79 ESCVAFNEQRSYNIHELDAAS-----NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS----------QAAFNAFLK 143 (614)
T ss_pred hHHHHHhcCCCCceEEecccc-----cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC----------HHHHHHHHH
Confidence 22222211 11234466666655432 23599999999883 235788999
Q ss_pred HhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcccc-ccHHHHH
Q 005285 295 QLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAED-VNFEELV 373 (704)
Q Consensus 295 ~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~d-vdl~~La 373 (704)
.|+..... .++|++|+.+..|-++|++ |+ ..+.|..++.++....++..+....+..+ ..+..|+
T Consensus 144 ~LEepp~~-----------tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La 209 (614)
T PRK14971 144 TLEEPPSY-----------AIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIA 209 (614)
T ss_pred HHhCCCCC-----------eEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 88874432 5677777777888899988 87 57999999999999888876665544322 2467777
Q ss_pred HhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 005285 374 FRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (704)
Q Consensus 374 ~~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al 412 (704)
..+.| +.+++.+++.....++ +.. |+.+++.+.+
T Consensus 210 ~~s~g-dlr~al~~Lekl~~y~---~~~-It~~~V~~~l 243 (614)
T PRK14971 210 QKADG-GMRDALSIFDQVVSFT---GGN-ITYKSVIENL 243 (614)
T ss_pred HHcCC-CHHHHHHHHHHHHHhc---cCC-ccHHHHHHHh
Confidence 76543 5556666665544443 322 7776665544
No 144
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.34 E-value=1.3e-11 Score=144.52 Aligned_cols=222 Identities=18% Similarity=0.244 Sum_probs=140.8
Q ss_pred cccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc--------------------
Q 005285 169 MYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-------------------- 228 (704)
Q Consensus 169 ~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~-------------------- 228 (704)
.|.+|+|++.++..|. ....+| ...+|||+|+||||||++|++++..+
T Consensus 2 pf~~ivGq~~~~~al~---~~av~~---------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 2 PFTAIVGQEDLKLALL---LNAVDP---------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred CcchhcChHHHHHHHH---HHhhCC---------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 4889999998875553 233344 12479999999999999999999877
Q ss_pred ---------------CCCEEEEeCccccchhhhhHHHHHHHHHHH---------hhCCCeEEEEccchhhhccCCCCChh
Q 005285 229 ---------------GLPFVFASGAEFTDSEKSGAARINEMFSIA---------RRNAPAFVFVDEIDAIAGRHARKDPR 284 (704)
Q Consensus 229 ---------------g~~~v~is~s~~~~~~~~g~~~vr~lF~~A---------k~~~P~ILfIDEiDal~~~~~~~~~e 284 (704)
..||+.+.++........+. .+...+... ......|||||||+.+.
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~-d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~--------- 139 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSL-DIERALREGEKAFQPGLLAEAHRGILYIDEVNLLD--------- 139 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcc-cHHHHhhcCCeeecCcceeecCCCeEEeChhhhCC---------
Confidence 35677666554332211111 011111100 01123599999999984
Q ss_pred HHHHHHHHHHHhcCCc---ccCCccccccCccEEEEEEcCCC-CCCcccccCCCccceeeeeCCCC-HHHHHHHHHHHhc
Q 005285 285 RRATFEALIAQLDGDK---ERTGIDRFSLRQAVIFICATNRP-DELDLEFVRPGRIDRRLYIGLPD-AKQRVQIFDVHSA 359 (704)
Q Consensus 285 ~~~~ln~LL~~ld~~~---~~~~~~~~~~~~~ViVIaaTN~p-~~LD~aLlRpgRfd~~I~v~~Pd-~~eR~~Il~~~l~ 359 (704)
..+++.|+..|+... ...+. .......+++|+|+|.. ..+.++|+. ||+.+|.++.|. .+++.+|++....
T Consensus 140 -~~~q~~Ll~~le~g~~~v~r~g~-~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~~~~ 215 (633)
T TIGR02442 140 -DHLVDVLLDAAAMGVNRVEREGL-SVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRRRLA 215 (633)
T ss_pred -HHHHHHHHHHHhcCCEEEEECCc-eeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHHHHh
Confidence 236788888886432 11111 12233568999999854 358889998 999999998874 6777777764322
Q ss_pred C-------------------------------CCccccccHHHHHHhc--cCC-CHHHHHHHHHHHHHHHHHhCCCcccH
Q 005285 360 G-------------------------------KQLAEDVNFEELVFRT--VGF-SGADIRNLVNESGIMSVRKGHSKIQQ 405 (704)
Q Consensus 360 ~-------------------------------~~l~~dvdl~~La~~t--~G~-sgadL~~Lv~eA~~~A~r~~~~~It~ 405 (704)
. ..+. +..+..++... .|. +.+-...+++-|...|+-+++..|+.
T Consensus 216 ~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is-~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~~ 294 (633)
T TIGR02442 216 FDADPEAFAARWAAEQEELRNRIARARSLLPSVRIS-DSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTA 294 (633)
T ss_pred hccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCH
Confidence 0 0011 11122222221 244 34555568888888999999999999
Q ss_pred HHHHHHHHHHHH
Q 005285 406 QDIVDVLDKQLL 417 (704)
Q Consensus 406 ~dl~~Al~~~~~ 417 (704)
+|+..|+.-++.
T Consensus 295 ~Dv~~A~~lvL~ 306 (633)
T TIGR02442 295 EDVREAAELVLP 306 (633)
T ss_pred HHHHHHHHHHhh
Confidence 999999998774
No 145
>PHA02244 ATPase-like protein
Probab=99.33 E-value=2.9e-11 Score=130.64 Aligned_cols=127 Identities=20% Similarity=0.271 Sum_probs=82.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccchh---h--hhHHHHH-HHHHHHhhCCCeEEEEccchhhhccC
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE---K--SGAARIN-EMFSIARRNAPAFVFVDEIDAIAGRH 278 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~~---~--~g~~~vr-~lF~~Ak~~~P~ILfIDEiDal~~~~ 278 (704)
..|||+||||||||++|+++|..++.||+.+++. .... + ....... .-|-.|.. ...+|+|||++.+..
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l--~d~~~L~G~i~~~g~~~dgpLl~A~~-~GgvLiLDEId~a~p-- 194 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAI--MDEFELKGFIDANGKFHETPFYEAFK-KGGLFFIDEIDASIP-- 194 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecC--hHHHhhcccccccccccchHHHHHhh-cCCEEEEeCcCcCCH--
Confidence 4699999999999999999999999999999843 1110 0 0000111 12223322 357999999998742
Q ss_pred CCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCC-----------CCCcccccCCCccceeeeeCCCCH
Q 005285 279 ARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRP-----------DELDLEFVRPGRIDRRLYIGLPDA 347 (704)
Q Consensus 279 ~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p-----------~~LD~aLlRpgRfd~~I~v~~Pd~ 347 (704)
. ++..|...++...-...........++.+|+|+|.+ ..|++|++. || ..|+++.|+.
T Consensus 195 -----~---vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RF-v~I~~dyp~~ 263 (383)
T PHA02244 195 -----E---ALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RF-APIEFDYDEK 263 (383)
T ss_pred -----H---HHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hc-EEeeCCCCcH
Confidence 2 344444444432111111222334568999999973 468999999 99 5799999984
No 146
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.31 E-value=2.8e-11 Score=112.45 Aligned_cols=124 Identities=34% Similarity=0.553 Sum_probs=83.1
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccccchhhhh-HHH---HHHHHHHHhhCCCeEEEEccchhhh
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKSG-AAR---INEMFSIARRNAPAFVFVDEIDAIA 275 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~~~~~~g-~~~---vr~lF~~Ak~~~P~ILfIDEiDal~ 275 (704)
..++++++||||||||++++.++..+ +.+++.+++.++....... ... ....+..+....+.+|+|||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 45689999999999999999999998 8999999998876653211 111 1223344455668999999999873
Q ss_pred ccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCC--CCcccccCCCccceeeeeC
Q 005285 276 GRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPD--ELDLEFVRPGRIDRRLYIG 343 (704)
Q Consensus 276 ~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~--~LD~aLlRpgRfd~~I~v~ 343 (704)
. . ....++..+....... ....++.+|+++|... .+++.+.+ ||+.++.++
T Consensus 98 ~-------~---~~~~~~~~i~~~~~~~-----~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 98 R-------G---AQNALLRVLETLNDLR-----IDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred H-------H---HHHHHHHHHHhcCcee-----ccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 1 1 1233333333322110 0123478889998877 67777777 998777765
No 147
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.30 E-value=4.1e-11 Score=129.94 Aligned_cols=140 Identities=28% Similarity=0.372 Sum_probs=100.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccch-hhhhHHHHHHH---HHHHh-hCC----C--eEEEEccchh
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-EKSGAARINEM---FSIAR-RNA----P--AFVFVDEIDA 273 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~-~~~g~~~vr~l---F~~Ak-~~~----P--~ILfIDEiDa 273 (704)
+.+||.||||||||++|+++|..++.+|+.++|...... ...|....... ...-+ ... . +|+|+|||+.
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInr 123 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINR 123 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEecccc
Confidence 469999999999999999999999999999999976654 33333222211 11000 000 1 4999999987
Q ss_pred hhccCCCCChhHHHHHHHHHHHhcCCcccCCccc-cccCccEEEEEEcC-----CCCCCcccccCCCccceeeeeCCCCH
Q 005285 274 IAGRHARKDPRRRATFEALIAQLDGDKERTGIDR-FSLRQAVIFICATN-----RPDELDLEFVRPGRIDRRLYIGLPDA 347 (704)
Q Consensus 274 l~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~-~~~~~~ViVIaaTN-----~p~~LD~aLlRpgRfd~~I~v~~Pd~ 347 (704)
.. ..+.+.|+..|+.....-+... +....+++||+|+| ....|++|+++ ||...+.++.|+.
T Consensus 124 a~----------p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp~~ 191 (329)
T COG0714 124 AP----------PEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDS 191 (329)
T ss_pred CC----------HHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEecCCCCc
Confidence 63 3478889998888655544444 55667899999999 45568999999 9988999999954
Q ss_pred -HHHHHHHHH
Q 005285 348 -KQRVQIFDV 356 (704)
Q Consensus 348 -~eR~~Il~~ 356 (704)
.+...++..
T Consensus 192 ~~e~~~i~~~ 201 (329)
T COG0714 192 EEEERIILAR 201 (329)
T ss_pred hHHHHHHHHh
Confidence 444444443
No 148
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.30 E-value=4.7e-11 Score=144.38 Aligned_cols=174 Identities=20% Similarity=0.275 Sum_probs=115.0
Q ss_pred cceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccccchhhh-
Q 005285 171 KEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKS- 246 (704)
Q Consensus 171 ~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~~~~~~- 246 (704)
+.|+|++.+.+.+...+...+.... ...++...+||+||||||||++|+++|..+ +.+++.++++++.+....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~---~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLS---DPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVA 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCC---CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHH
Confidence 4578888777666665554321100 001234568999999999999999999976 578999999987653211
Q ss_pred ----------hHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEE
Q 005285 247 ----------GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (704)
Q Consensus 247 ----------g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (704)
|......+....+.+..+||||||||.+. ....+.|+..|+...-..+..+.....+.+|
T Consensus 642 ~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~----------~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~ii 711 (852)
T TIGR03346 642 RLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAH----------PDVFNVLLQVLDDGRLTDGQGRTVDFRNTVI 711 (852)
T ss_pred HhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCC----------HHHHHHHHHHHhcCceecCCCeEEecCCcEE
Confidence 11112334445555666899999999773 2366778877765332221112222345789
Q ss_pred EEEcCCCCC-------------------------CcccccCCCccceeeeeCCCCHHHHHHHHHHHhc
Q 005285 317 ICATNRPDE-------------------------LDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA 359 (704)
Q Consensus 317 IaaTN~p~~-------------------------LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~ 359 (704)
|+|||.... +.|.|+. |||.++.|.+++.+...+|+...+.
T Consensus 712 I~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~ 777 (852)
T TIGR03346 712 IMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLG 777 (852)
T ss_pred EEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHH
Confidence 999998321 2345555 9999999999999999999987654
No 149
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.29 E-value=4.1e-11 Score=144.16 Aligned_cols=172 Identities=18% Similarity=0.194 Sum_probs=113.4
Q ss_pred cceecCcccHHHHHHHHHHhCCchhhhhcCCccCce-EEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccccchhh-
Q 005285 171 KEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRG-VLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEK- 245 (704)
Q Consensus 171 ~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~g-vLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~~~~~- 245 (704)
+.|+|++++.+.+.+.+...+....+ -..|.| +||+||||||||.+|+++|..+ +..++.++++++.+...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~----~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~ 641 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLED----PRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTV 641 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCC----CCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhh
Confidence 35778887766666555432211111 134665 7999999999999999999987 45789999888754311
Q ss_pred ----------hhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEE
Q 005285 246 ----------SGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVI 315 (704)
Q Consensus 246 ----------~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~Vi 315 (704)
.|...-..+....+++..+||+|||||... ....+.|+..+|...-..+.++.....+.+
T Consensus 642 ~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~----------~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~i 711 (852)
T TIGR03345 642 SRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAH----------PDVLELFYQVFDKGVMEDGEGREIDFKNTV 711 (852)
T ss_pred ccccCCCCCcccccccchHHHHHHhCCCcEEEEechhhcC----------HHHHHHHHHHhhcceeecCCCcEEeccccE
Confidence 111111234455566778999999999763 235677777776543222222223335689
Q ss_pred EEEEcCCCC-----------------------------CCcccccCCCccceeeeeCCCCHHHHHHHHHHHhc
Q 005285 316 FICATNRPD-----------------------------ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA 359 (704)
Q Consensus 316 VIaaTN~p~-----------------------------~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~ 359 (704)
||+|||... .+.|+|+. |++ .|.|.+.+.++..+|+...+.
T Consensus 712 iI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~ 781 (852)
T TIGR03345 712 ILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLD 781 (852)
T ss_pred EEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHH
Confidence 999998621 13456666 997 899999999999999987764
No 150
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.27 E-value=8e-11 Score=142.00 Aligned_cols=174 Identities=18% Similarity=0.236 Sum_probs=113.6
Q ss_pred ccceecCcccHHHHHHHHHHhCCchhhhhcCCccC-ceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccccchhh
Q 005285 170 YKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFV-RGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEK 245 (704)
Q Consensus 170 f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p-~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~~~~~ 245 (704)
++.|+|++.+.+.+...+...+..... -..| ..+||+||||||||++|+++|..+ +.+++.++++++.+...
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~----~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~ 642 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSD----PNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHS 642 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccC----CCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhh
Confidence 556889988777777666543311000 0123 358999999999999999999876 56899999998865311
Q ss_pred h-----------hHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccE
Q 005285 246 S-----------GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAV 314 (704)
Q Consensus 246 ~-----------g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~V 314 (704)
. |......+....+....+||||||++.+. ....+.|+..++...-..+..+.....+.
T Consensus 643 ~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~----------~~v~~~Ll~ile~g~l~d~~gr~vd~rn~ 712 (857)
T PRK10865 643 VSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAH----------PDVFNILLQVLDDGRLTDGQGRTVDFRNT 712 (857)
T ss_pred HHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCC----------HHHHHHHHHHHhhCceecCCceEEeeccc
Confidence 0 11111223333344445899999999773 23567777777643211111112223356
Q ss_pred EEEEEcCCCC-------------------------CCcccccCCCccceeeeeCCCCHHHHHHHHHHHhc
Q 005285 315 IFICATNRPD-------------------------ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA 359 (704)
Q Consensus 315 iVIaaTN~p~-------------------------~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~ 359 (704)
+||+|||... .+.|+|+. |+|..+.|.+++.+...+|++..+.
T Consensus 713 iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~ 780 (857)
T PRK10865 713 VVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQ 780 (857)
T ss_pred EEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHH
Confidence 8899999731 23456776 9999999999999999999887764
No 151
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.26 E-value=1.7e-10 Score=118.62 Aligned_cols=97 Identities=20% Similarity=0.239 Sum_probs=70.2
Q ss_pred EEEEEcCC-------------CCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccc-cccHHHHHHhccCCC
Q 005285 315 IFICATNR-------------PDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAE-DVNFEELVFRTVGFS 380 (704)
Q Consensus 315 iVIaaTN~-------------p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~-dvdl~~La~~t~G~s 380 (704)
+||+|||+ |.-+++.|+. |+ ..|..-+++.++.++|++.......+.- +..+..++.....-|
T Consensus 327 ivifAsNrG~~~irGt~d~~sPhGip~dllD--Rl-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~ts 403 (456)
T KOG1942|consen 327 IVIFASNRGMCTIRGTEDILSPHGIPPDLLD--RL-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTS 403 (456)
T ss_pred eEEEecCCcceeecCCcCCCCCCCCCHHHhh--he-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchh
Confidence 67778887 3345666666 66 4677778899999999998876555542 223566666555555
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Q 005285 381 GADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414 (704)
Q Consensus 381 gadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al~~ 414 (704)
-+-.-+|+.-|.+.|...|+..|..+|++++-+-
T Consensus 404 LRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~~L 437 (456)
T KOG1942|consen 404 LRYAVQLLTPASILAKTNGRKEISVEDVEEVTEL 437 (456)
T ss_pred HHHHHHhcCHHHHHHHHcCCceeecccHHHHHHH
Confidence 5666677778888998899999999999877653
No 152
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.24 E-value=2.4e-10 Score=120.32 Aligned_cols=213 Identities=15% Similarity=0.231 Sum_probs=134.0
Q ss_pred ecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---------CCCEEEEeCccccch-
Q 005285 174 VLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---------GLPFVFASGAEFTDS- 243 (704)
Q Consensus 174 vG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~---------g~~~v~is~s~~~~~- 243 (704)
+|.+.+++.|..+.+.+..|. ..-+.++||+|++|.|||++++.++... .+|++++.+..-...
T Consensus 37 IgY~~A~~~L~~L~~Ll~~P~------~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~ 110 (302)
T PF05621_consen 37 IGYPRAKEALDRLEELLEYPK------RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDER 110 (302)
T ss_pred ecCHHHHHHHHHHHHHHhCCc------ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChH
Confidence 677788888888888888883 2345679999999999999999998754 257888776442211
Q ss_pred -------------hh---hhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccc
Q 005285 244 -------------EK---SGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDR 307 (704)
Q Consensus 244 -------------~~---~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~ 307 (704)
+. .....-..+....+...+.+|+|||++.+.. +.......++|.|-.......
T Consensus 111 ~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLa---Gs~~~qr~~Ln~LK~L~NeL~------- 180 (302)
T PF05621_consen 111 RFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLA---GSYRKQREFLNALKFLGNELQ------- 180 (302)
T ss_pred HHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhc---ccHHHHHHHHHHHHHHhhccC-------
Confidence 00 0111122334455667788999999999863 222233334443332221111
Q ss_pred cccCccEEEEEEcCCCC--CCcccccCCCccceeeeeCCCC-HHHHHHHHHHHhcCCCccc--cc---c-HHHHHHhccC
Q 005285 308 FSLRQAVIFICATNRPD--ELDLEFVRPGRIDRRLYIGLPD-AKQRVQIFDVHSAGKQLAE--DV---N-FEELVFRTVG 378 (704)
Q Consensus 308 ~~~~~~ViVIaaTN~p~--~LD~aLlRpgRfd~~I~v~~Pd-~~eR~~Il~~~l~~~~l~~--dv---d-l~~La~~t~G 378 (704)
-+++.++|..-.. .-|+.+.+ ||+ .+.+|... -++-..++..+-...++.. ++ + ...|-..|.|
T Consensus 181 ----ipiV~vGt~~A~~al~~D~QLa~--RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G 253 (302)
T PF05621_consen 181 ----IPIVGVGTREAYRALRTDPQLAS--RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEG 253 (302)
T ss_pred ----CCeEEeccHHHHHHhccCHHHHh--ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCC
Confidence 1245555532222 33677777 996 45566643 3345556665544444321 12 2 2566677888
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCcccHHHHHH
Q 005285 379 FSGADIRNLVNESGIMSVRKGHSKIQQQDIVD 410 (704)
Q Consensus 379 ~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~ 410 (704)
.+| ++.++++.|+..|++.|.+.||.+.|..
T Consensus 254 ~iG-~l~~ll~~aA~~AI~sG~E~It~~~l~~ 284 (302)
T PF05621_consen 254 LIG-ELSRLLNAAAIAAIRSGEERITREILDK 284 (302)
T ss_pred chH-HHHHHHHHHHHHHHhcCCceecHHHHhh
Confidence 766 6999999999999999999999988753
No 153
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.23 E-value=2.6e-10 Score=124.35 Aligned_cols=187 Identities=18% Similarity=0.181 Sum_probs=122.4
Q ss_pred CCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCC-------CEEEE-eC
Q 005285 166 TKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGL-------PFVFA-SG 237 (704)
Q Consensus 166 ~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~-------~~v~i-s~ 237 (704)
.+..|++|+|++++++.|...+.. .+.|..+||+||+|+|||++|+.+|+.+.. |.... .|
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~-----------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYRE-----------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHc-----------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 567899999999888777765542 246788999999999999999999998744 11100 11
Q ss_pred ---c-----------ccc---ch---------hhhhHHHHHHHHHHH----hhCCCeEEEEccchhhhccCCCCChhHHH
Q 005285 238 ---A-----------EFT---DS---------EKSGAARINEMFSIA----RRNAPAFVFVDEIDAIAGRHARKDPRRRA 287 (704)
Q Consensus 238 ---s-----------~~~---~~---------~~~g~~~vr~lF~~A----k~~~P~ILfIDEiDal~~~~~~~~~e~~~ 287 (704)
. ++. .. ...+...+|.+-+.. ......|++|||+|.+. ..
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~----------~~ 156 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN----------RN 156 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC----------HH
Confidence 0 010 00 001123344443322 23445799999999994 23
Q ss_pred HHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccc
Q 005285 288 TFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDV 367 (704)
Q Consensus 288 ~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dv 367 (704)
..|.||..|+....+ .++|..|+.++.+.+.+++ |+ ..+.+++|+.++..++++.......+. +.
T Consensus 157 aanaLLk~LEEpp~~-----------~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~~~-~~ 221 (351)
T PRK09112 157 AANAILKTLEEPPAR-----------ALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQGSD-GE 221 (351)
T ss_pred HHHHHHHHHhcCCCC-----------ceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccCCC-HH
Confidence 578899999774332 4666667888999899988 98 699999999999999998743222221 22
Q ss_pred cHHHHHHhccCCCHHHHHHHHH
Q 005285 368 NFEELVFRTVGFSGADIRNLVN 389 (704)
Q Consensus 368 dl~~La~~t~G~sgadL~~Lv~ 389 (704)
.+..++..+.| +++...++++
T Consensus 222 ~~~~i~~~s~G-~pr~Al~ll~ 242 (351)
T PRK09112 222 ITEALLQRSKG-SVRKALLLLN 242 (351)
T ss_pred HHHHHHHHcCC-CHHHHHHHHh
Confidence 35566665555 4444444444
No 154
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.23 E-value=5.6e-11 Score=143.28 Aligned_cols=139 Identities=18% Similarity=0.216 Sum_probs=91.5
Q ss_pred cceecCcccHHHHHHHHHHhCCchhhhhcCCccCc-eEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccccchhh-
Q 005285 171 KEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVR-GVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEK- 245 (704)
Q Consensus 171 ~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~-gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~~~~~- 245 (704)
+.|+||+++.+.+...+...+.... ....|. .+||+||||||||++|+++|+.+ +.+++.++++++.+...
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~----~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~ 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLK----NPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTV 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhccc----CCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccH
Confidence 4578888887777666543222100 012343 47899999999999999999986 46899999988865321
Q ss_pred ----------hhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEE
Q 005285 246 ----------SGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVI 315 (704)
Q Consensus 246 ----------~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~Vi 315 (704)
.|......+.+..+.+..+||+|||+|.+. ....+.|+..|+...-..+..+.....+.+
T Consensus 585 ~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~----------~~v~~~Llq~le~g~~~d~~g~~v~~~~~i 654 (821)
T CHL00095 585 SKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAH----------PDIFNLLLQILDDGRLTDSKGRTIDFKNTL 654 (821)
T ss_pred HHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCC----------HHHHHHHHHHhccCceecCCCcEEecCceE
Confidence 111223345666666666999999999873 236788888887533222212223335689
Q ss_pred EEEEcCCC
Q 005285 316 FICATNRP 323 (704)
Q Consensus 316 VIaaTN~p 323 (704)
+|+|||..
T Consensus 655 ~I~Tsn~g 662 (821)
T CHL00095 655 IIMTSNLG 662 (821)
T ss_pred EEEeCCcc
Confidence 99999864
No 155
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.23 E-value=6.7e-11 Score=126.72 Aligned_cols=69 Identities=32% Similarity=0.464 Sum_probs=54.1
Q ss_pred CCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcC--CCEEEEeCcccc
Q 005285 166 TKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESG--LPFVFASGAEFT 241 (704)
Q Consensus 166 ~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g--~~~v~is~s~~~ 241 (704)
+....+.++||.++++..--+++.++.. .-..+++||.||||||||.||-++|+++| +||+.++++++.
T Consensus 19 ~~~~~~GlVGQ~~AReAagiiv~mIk~~-------K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiy 89 (398)
T PF06068_consen 19 ARYIADGLVGQEKAREAAGIIVDMIKEG-------KIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIY 89 (398)
T ss_dssp B-SEETTEES-HHHHHHHHHHHHHHHTT---------TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-
T ss_pred EeeccccccChHHHHHHHHHHHHHHhcc-------cccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceee
Confidence 3445678999999999999999988776 22468999999999999999999999997 899999998854
No 156
>PRK09087 hypothetical protein; Validated
Probab=99.22 E-value=3.6e-10 Score=116.12 Aligned_cols=202 Identities=19% Similarity=0.186 Sum_probs=124.7
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccch
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS 243 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~ 243 (704)
-.+..+|++.+..+.-...+. .++++. + ...+.++|+||+|+|||+|+++++...++. +++..++...
T Consensus 14 ~~~~~~~~~Fi~~~~N~~a~~----~l~~~~-----~-~~~~~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~~~ 81 (226)
T PRK09087 14 HDPAYGRDDLLVTESNRAAVS----LVDHWP-----N-WPSPVVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIGSD 81 (226)
T ss_pred CCCCCChhceeecCchHHHHH----HHHhcc-----c-CCCCeEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcchH
Confidence 355678999986554333333 333321 1 123459999999999999999999887655 4443333322
Q ss_pred hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCC
Q 005285 244 EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRP 323 (704)
Q Consensus 244 ~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p 323 (704)
. +..... .+|+|||+|.+.. + ...+-.+++.+.... ..+||+++..|
T Consensus 82 ~----------~~~~~~---~~l~iDDi~~~~~-----~---~~~lf~l~n~~~~~g------------~~ilits~~~p 128 (226)
T PRK09087 82 A----------ANAAAE---GPVLIEDIDAGGF-----D---ETGLFHLINSVRQAG------------TSLLMTSRLWP 128 (226)
T ss_pred H----------HHhhhc---CeEEEECCCCCCC-----C---HHHHHHHHHHHHhCC------------CeEEEECCCCh
Confidence 1 111111 3788999997631 1 112334444333211 13555555444
Q ss_pred CC---CcccccCCCccc--eeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 005285 324 DE---LDLEFVRPGRID--RRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSVR 397 (704)
Q Consensus 324 ~~---LD~aLlRpgRfd--~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r 397 (704)
.. ..+.|++ ||. ..+.+..|+.+.|.+|++.++....+. ++..+..|+++..| +.+.+..+++.....+..
T Consensus 129 ~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~ 205 (226)
T PRK09087 129 SSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMER-SLFAAQTIVDRLDRLALE 205 (226)
T ss_pred HHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHH
Confidence 42 3577887 885 589999999999999999888765443 23346777777654 556666666666655555
Q ss_pred hCCCcccHHHHHHHHHH
Q 005285 398 KGHSKIQQQDIVDVLDK 414 (704)
Q Consensus 398 ~~~~~It~~dl~~Al~~ 414 (704)
.+ ..||...+.+++..
T Consensus 206 ~~-~~it~~~~~~~l~~ 221 (226)
T PRK09087 206 RK-SRITRALAAEVLNE 221 (226)
T ss_pred hC-CCCCHHHHHHHHHh
Confidence 44 55898888877764
No 157
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.22 E-value=2.7e-10 Score=127.04 Aligned_cols=198 Identities=17% Similarity=0.216 Sum_probs=119.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCC--CEEEEeCcc-ccch-hhhh-HHHH--HHHHHHHhhC---CCeEEEEccchhh
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKESGL--PFVFASGAE-FTDS-EKSG-AARI--NEMFSIARRN---APAFVFVDEIDAI 274 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e~g~--~~v~is~s~-~~~~-~~~g-~~~v--r~lF~~Ak~~---~P~ILfIDEiDal 274 (704)
.+|||+||||||||++|++++..++. +|....+.- .... .|.. .... ..-|...... ...+||+|||..+
T Consensus 40 ~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra 119 (498)
T PRK13531 40 ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKA 119 (498)
T ss_pred CCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeecccccC
Confidence 57999999999999999999987643 555554432 1111 1110 0111 1223222211 2349999999866
Q ss_pred hccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCC---CCcccccCCCccceeeeeCCCC-HHHH
Q 005285 275 AGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPD---ELDLEFVRPGRIDRRLYIGLPD-AKQR 350 (704)
Q Consensus 275 ~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~---~LD~aLlRpgRfd~~I~v~~Pd-~~eR 350 (704)
. ..+.+.||..|.......+......+..++ ++|||... ...+++.. ||-..+.+|+|+ .++-
T Consensus 120 s----------p~~QsaLLeam~Er~~t~g~~~~~lp~rfi-v~ATN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e 186 (498)
T PRK13531 120 G----------PAILNTLLTAINERRFRNGAHEEKIPMRLL-VTASNELPEADSSLEALYD--RMLIRLWLDKVQDKANF 186 (498)
T ss_pred C----------HHHHHHHHHHHHhCeEecCCeEEeCCCcEE-EEECCCCcccCCchHHhHh--hEEEEEECCCCCchHHH
Confidence 4 347889999986554333332233333344 44456422 23348888 998899999997 4565
Q ss_pred HHHHHHHhc--CCCc------cc-----------ccc--------HHHHHHh---c---cCCCHHHHHHHHHHHHHHHHH
Q 005285 351 VQIFDVHSA--GKQL------AE-----------DVN--------FEELVFR---T---VGFSGADIRNLVNESGIMSVR 397 (704)
Q Consensus 351 ~~Il~~~l~--~~~l------~~-----------dvd--------l~~La~~---t---~G~sgadL~~Lv~eA~~~A~r 397 (704)
.+|+..... .... .. .+. +..|... + ...|++--.++++-|...|.-
T Consensus 187 ~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l 266 (498)
T PRK13531 187 RSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFF 266 (498)
T ss_pred HHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 778765321 0111 00 000 1233321 2 237888888999999999999
Q ss_pred hCCCcccHHHHHHHHHHHH
Q 005285 398 KGHSKIQQQDIVDVLDKQL 416 (704)
Q Consensus 398 ~~~~~It~~dl~~Al~~~~ 416 (704)
.|+..|+.+|+. .+..++
T Consensus 267 ~GR~~V~p~Dv~-ll~~vL 284 (498)
T PRK13531 267 SGRDAIAPIDLI-LLKDCL 284 (498)
T ss_pred CCCCCCCHHHHH-HhHHHh
Confidence 999999999998 555554
No 158
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.21 E-value=2e-10 Score=114.34 Aligned_cols=144 Identities=20% Similarity=0.262 Sum_probs=99.4
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCCC------------------------EEEEeCccccchhhhhHHHHHHHHHH
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLP------------------------FVFASGAEFTDSEKSGAARINEMFSI 257 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~g~~------------------------~v~is~s~~~~~~~~g~~~vr~lF~~ 257 (704)
+.|..+||+||||+|||++|+++|..+... +..+.... ...+...++.+.+.
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~----~~~~~~~i~~i~~~ 87 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG----QSIKVDQVRELVEF 87 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc----CcCCHHHHHHHHHH
Confidence 567889999999999999999999986432 22221110 01223445555555
Q ss_pred Hhh----CCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCC
Q 005285 258 ARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRP 333 (704)
Q Consensus 258 Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRp 333 (704)
+.. ....|++|||+|.+.. ...+.|+..|+.... ..++|++||.+..+.+++++
T Consensus 88 ~~~~~~~~~~kviiide~~~l~~----------~~~~~Ll~~le~~~~-----------~~~~il~~~~~~~l~~~i~s- 145 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMNE----------AAANALLKTLEEPPP-----------NTLFILITPSPEKLLPTIRS- 145 (188)
T ss_pred HccCcccCCeEEEEEechhhhCH----------HHHHHHHHHhcCCCC-----------CeEEEEEECChHhChHHHHh-
Confidence 543 3357999999999842 246788888876332 25677777788999999998
Q ss_pred CccceeeeeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccC
Q 005285 334 GRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVG 378 (704)
Q Consensus 334 gRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G 378 (704)
|+ ..+.+++|+.++..++++.+ .+. +..+..++..+.|
T Consensus 146 -r~-~~~~~~~~~~~~~~~~l~~~----gi~-~~~~~~i~~~~~g 183 (188)
T TIGR00678 146 -RC-QVLPFPPLSEEALLQWLIRQ----GIS-EEAAELLLALAGG 183 (188)
T ss_pred -hc-EEeeCCCCCHHHHHHHHHHc----CCC-HHHHHHHHHHcCC
Confidence 88 58999999999999998876 232 2335566655544
No 159
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.20 E-value=4.2e-10 Score=123.36 Aligned_cols=175 Identities=15% Similarity=0.146 Sum_probs=119.4
Q ss_pred CCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC-------------
Q 005285 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP------------- 231 (704)
Q Consensus 165 ~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~------------- 231 (704)
-.+.+|++|+|++++++.|...+.. .+.|..+||+||+|+||+++|.++|+.+-..
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~-----------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRS-----------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 3567999999999988877765543 2567899999999999999999999865221
Q ss_pred ---------------------EEEEeCccccchh-----hhhHHHHHHHHHHHh----hCCCeEEEEccchhhhccCCCC
Q 005285 232 ---------------------FVFASGAEFTDSE-----KSGAARINEMFSIAR----RNAPAFVFVDEIDAIAGRHARK 281 (704)
Q Consensus 232 ---------------------~v~is~s~~~~~~-----~~g~~~vr~lF~~Ak----~~~P~ILfIDEiDal~~~~~~~ 281 (704)
++.+.... .+.. .-....+|.+-+.+. ...|.|++|||+|.+.
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~-~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~------ 154 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSW-NEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN------ 154 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEeccc-ccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC------
Confidence 11111000 0000 012234555544433 3457899999999883
Q ss_pred ChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCC
Q 005285 282 DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGK 361 (704)
Q Consensus 282 ~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~ 361 (704)
....|.||+.+..... +.++|.+|+.++.+.+.+++ |+ ..+.|++|+.++..+++..+...
T Consensus 155 ----~~aanaLLK~LEepp~-----------~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~- 215 (365)
T PRK07471 155 ----ANAANALLKVLEEPPA-----------RSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPD- 215 (365)
T ss_pred ----HHHHHHHHHHHhcCCC-----------CeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhccc-
Confidence 3467899999876432 35788889999999999887 88 68999999999999999876421
Q ss_pred CccccccHHHHHHhccC
Q 005285 362 QLAEDVNFEELVFRTVG 378 (704)
Q Consensus 362 ~l~~dvdl~~La~~t~G 378 (704)
..+..+..++..+.|
T Consensus 216 --~~~~~~~~l~~~s~G 230 (365)
T PRK07471 216 --LPDDPRAALAALAEG 230 (365)
T ss_pred --CCHHHHHHHHHHcCC
Confidence 111122456655555
No 160
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.20 E-value=5.1e-11 Score=119.19 Aligned_cols=205 Identities=21% Similarity=0.306 Sum_probs=134.4
Q ss_pred cccCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc-C----CCEEEEe
Q 005285 162 YVSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-G----LPFVFAS 236 (704)
Q Consensus 162 ~~~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~-g----~~~v~is 236 (704)
.++..+..++|++|.++..+.|+-+...-..| +++|.||||||||+-+.++|+++ | --++..+
T Consensus 18 VeKYrP~~l~dIVGNe~tv~rl~via~~gnmP------------~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELN 85 (333)
T KOG0991|consen 18 VEKYRPSVLQDIVGNEDTVERLSVIAKEGNMP------------NLIISGPPGTGKTTSILCLARELLGDSYKEAVLELN 85 (333)
T ss_pred HHhhCchHHHHhhCCHHHHHHHHHHHHcCCCC------------ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhcc
Confidence 35778899999999999888888776654444 69999999999999999999986 3 2355666
Q ss_pred CccccchhhhhHHHHH---HHHHHHhhCCC----eEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccc
Q 005285 237 GAEFTDSEKSGAARIN---EMFSIARRNAP----AFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFS 309 (704)
Q Consensus 237 ~s~~~~~~~~g~~~vr---~lF~~Ak~~~P----~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~ 309 (704)
+|+-.. ...+| ..|.+-+-.-| .||++||+|++... ....|-..|+-..+.
T Consensus 86 ASdeRG-----IDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~g----------AQQAlRRtMEiyS~t------- 143 (333)
T KOG0991|consen 86 ASDERG-----IDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAG----------AQQALRRTMEIYSNT------- 143 (333)
T ss_pred Cccccc-----cHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhH----------HHHHHHHHHHHHccc-------
Confidence 665332 22233 45665554332 59999999998521 233444445443332
Q ss_pred cCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHH
Q 005285 310 LRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLV 388 (704)
Q Consensus 310 ~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~Lv 388 (704)
..+..++|..+.+=+.+.+ |+. .+.+...+..+..+-+....+...+. .+.-++.+.....| |+++.+
T Consensus 144 ----tRFalaCN~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~G----DMRQal 212 (333)
T KOG0991|consen 144 ----TRFALACNQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQG----DMRQAL 212 (333)
T ss_pred ----chhhhhhcchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccc----hHHHHH
Confidence 3678889998887776766 663 45566666665555444444333332 23346667665555 888888
Q ss_pred HHHHHHHHHhCCCcccHHHHHHHHH
Q 005285 389 NESGIMSVRKGHSKIQQQDIVDVLD 413 (704)
Q Consensus 389 ~eA~~~A~r~~~~~It~~dl~~Al~ 413 (704)
|+.. +.-.+...|+.+.+.+.++
T Consensus 213 NnLQ--st~~g~g~Vn~enVfKv~d 235 (333)
T KOG0991|consen 213 NNLQ--STVNGFGLVNQENVFKVCD 235 (333)
T ss_pred HHHH--HHhccccccchhhhhhccC
Confidence 8744 4456777888887766554
No 161
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.20 E-value=3.9e-11 Score=113.27 Aligned_cols=118 Identities=30% Similarity=0.391 Sum_probs=75.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccchh-hhhHHHHH--------HHHHHHhhCCCeEEEEccchhhhc
Q 005285 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE-KSGAARIN--------EMFSIARRNAPAFVFVDEIDAIAG 276 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~~-~~g~~~vr--------~lF~~Ak~~~P~ILfIDEiDal~~ 276 (704)
+|||+||||||||++|+.+|+.++.+++.++++...... ..+.-... ..+-.+.. .++|+||||++...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~-~~~il~lDEin~a~- 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR-KGGILVLDEINRAP- 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH-EEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc-ceeEEEECCcccCC-
Confidence 589999999999999999999999999999998865431 11110000 00001111 46899999999763
Q ss_pred cCCCCChhHHHHHHHHHHHhcCCccc--CCccccccCc------cEEEEEEcCCCC----CCcccccCCCcc
Q 005285 277 RHARKDPRRRATFEALIAQLDGDKER--TGIDRFSLRQ------AVIFICATNRPD----ELDLEFVRPGRI 336 (704)
Q Consensus 277 ~~~~~~~e~~~~ln~LL~~ld~~~~~--~~~~~~~~~~------~ViVIaaTN~p~----~LD~aLlRpgRf 336 (704)
..++..|+..++..... .+........ ++.+|+|+|..+ .++++|++ ||
T Consensus 79 ---------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 79 ---------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp ---------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ---------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 33566666666654322 1111111112 499999999988 89999999 87
No 162
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.19 E-value=3.2e-10 Score=131.43 Aligned_cols=257 Identities=13% Similarity=0.111 Sum_probs=140.5
Q ss_pred ccCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEE-Ee---Cc
Q 005285 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF-AS---GA 238 (704)
Q Consensus 163 ~~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~-is---~s 238 (704)
++..+.+++||+|+++..+.++.++.....+ ....+.++|+||||||||++++.+|++++..++. .+ +.
T Consensus 76 eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~-------~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~ 148 (637)
T TIGR00602 76 EKYKPETQHELAVHKKKIEEVETWLKAQVLE-------NAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPD 148 (637)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhcccc-------cCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhc
Confidence 4677889999999997666666554433222 2334568999999999999999999998865433 11 11
Q ss_pred ccc-------------chhhhhHHHHHHHHHHHhh----------CCCeEEEEccchhhhccCCCCChhHHHHHHHHHH-
Q 005285 239 EFT-------------DSEKSGAARINEMFSIARR----------NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIA- 294 (704)
Q Consensus 239 ~~~-------------~~~~~g~~~vr~lF~~Ak~----------~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~- 294 (704)
... ..+......++.+...+.. ....|||||||+.+..+ ....+..+|.
T Consensus 149 ~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-------~~~~lq~lLr~ 221 (637)
T TIGR00602 149 FQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-------DTRALHEILRW 221 (637)
T ss_pred ccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-------hHHHHHHHHHH
Confidence 000 0111223345555555542 34579999999988642 1123444554
Q ss_pred HhcCCcccCCccccccCccEEEEEEcC-CCC--------------CCcccccCCCccceeeeeCCCCHHHHHHHHHHHhc
Q 005285 295 QLDGDKERTGIDRFSLRQAVIFICATN-RPD--------------ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA 359 (704)
Q Consensus 295 ~ld~~~~~~~~~~~~~~~~ViVIaaTN-~p~--------------~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~ 359 (704)
.... .. .+.+|++++ .+. .|.++++..-|+ .+|.|++.+.....+.|+..+.
T Consensus 222 ~~~e-~~-----------~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~ 288 (637)
T TIGR00602 222 KYVS-IG-----------RCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVT 288 (637)
T ss_pred Hhhc-CC-----------CceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHH
Confidence 2211 11 123333332 121 133667642244 4799999999997777766554
Q ss_pred CCC--c------cccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHh-------CCCcccHHHHHHHHHHHHHhcccccc
Q 005285 360 GKQ--L------AEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRK-------GHSKIQQQDIVDVLDKQLLEGMGVLL 424 (704)
Q Consensus 360 ~~~--l------~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r~-------~~~~It~~dl~~Al~~~~~~~~g~~~ 424 (704)
... . ..+..+..|+.. +.+|++..++.-...+.+. +...++..++..+..+. ...
T Consensus 289 ~E~~~~~~~~~~p~~~~l~~I~~~----s~GDiRsAIn~LQf~~~~~g~~a~~~~~~~vs~~hv~~a~~k~------~~~ 358 (637)
T TIGR00602 289 IEAKKNGEKIKVPKKTSVELLCQG----CSGDIRSAINSLQFSSSKSGSLPIKKRMSTKSDAHASKSKIKG------KHS 358 (637)
T ss_pred hhhhccccccccCCHHHHHHHHHh----CCChHHHHHHHHHHHHhcCCccccccccccccHHHhhhccccC------CCC
Confidence 321 1 112245666664 4559998888666554332 22345555544443321 112
Q ss_pred chhhhhhhccchhhHHHHHHHHHHHHHHHHHhh
Q 005285 425 TEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHL 457 (704)
Q Consensus 425 ~~~~~~~~~~~~~~~~k~~~A~HEaGhalva~~ 457 (704)
+..+. .....+...+.-+..+|-.|..|....
T Consensus 359 t~~e~-~~l~~~~~rd~sl~lfhalgkily~Kr 390 (637)
T TIGR00602 359 SNNEN-QEIQALGGKDVSLFLFRALGKILYCKR 390 (637)
T ss_pred CchhH-HHHHhhccccchhHHHHHhChhhcccc
Confidence 22111 111222333444567777777665443
No 163
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=8.5e-11 Score=136.93 Aligned_cols=170 Identities=22% Similarity=0.334 Sum_probs=121.3
Q ss_pred cceecCcccHHHHHHHHHH----hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcC---CCEEEEeCccccch
Q 005285 171 KEVVLGGDVWDLLDELMIY----MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESG---LPFVFASGAEFTDS 243 (704)
Q Consensus 171 ~dVvG~~~~k~~L~elv~~----l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g---~~~v~is~s~~~~~ 243 (704)
+-|+||+++...+...+.- |++| .+|-.+.||.||+|+|||-||+++|..+. ..++.+++|++++.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp-------~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~Ek 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDP-------NRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEK 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCC-------CCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHH
Confidence 3578998877666655543 3333 22334567889999999999999999986 89999999999875
Q ss_pred hhh-----------hHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCc
Q 005285 244 EKS-----------GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQ 312 (704)
Q Consensus 244 ~~~-----------g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~ 312 (704)
... |...-..+-+..+.+..|||++|||+.-- ..++|-||..||.-.-..+..+.....
T Consensus 564 HsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAH----------pdV~nilLQVlDdGrLTD~~Gr~VdFr 633 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAH----------PDVFNLLLQVLDDGRLTDGQGRTVDFR 633 (786)
T ss_pred HHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcC----------HHHHHHHHHHhcCCeeecCCCCEEecc
Confidence 221 22223355566677778999999999753 348899999998765555555555667
Q ss_pred cEEEEEEcCCCCC----------------------------CcccccCCCccceeeeeCCCCHHHHHHHHHHHhc
Q 005285 313 AVIFICATNRPDE----------------------------LDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA 359 (704)
Q Consensus 313 ~ViVIaaTN~p~~----------------------------LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~ 359 (704)
+.++|+|||--.. ..|+|+. |+|.+|.|.+.+.+...+|+...+.
T Consensus 634 NtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~ 706 (786)
T COG0542 634 NTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLN 706 (786)
T ss_pred eeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHHH
Confidence 7899999986311 2344454 8888888888888888888776654
No 164
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.18 E-value=1.1e-09 Score=114.70 Aligned_cols=189 Identities=17% Similarity=0.207 Sum_probs=115.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCC-CEE--EEeCccc-----c----chhhh---h---HHHHHHHH----HHHhhCC
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKESGL-PFV--FASGAEF-----T----DSEKS---G---AARINEMF----SIARRNA 262 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e~g~-~~v--~is~s~~-----~----~~~~~---g---~~~vr~lF----~~Ak~~~ 262 (704)
..++|+||+|+|||++++.+++++.. .+. .+..... . ...+. + ....+.+. .......
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 45889999999999999999998752 222 1111111 0 00000 0 11112221 2334566
Q ss_pred CeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCC---CCc----ccccCCCc
Q 005285 263 PAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPD---ELD----LEFVRPGR 335 (704)
Q Consensus 263 P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~---~LD----~aLlRpgR 335 (704)
+.+|+|||+|.+.. . .+.. +..+....... ...+.|+.+ ..++ .+. ..+.+ |
T Consensus 124 ~~vliiDe~~~l~~-------~---~~~~-l~~l~~~~~~~-------~~~~~vvl~-g~~~~~~~l~~~~~~~l~~--r 182 (269)
T TIGR03015 124 RALLVVDEAQNLTP-------E---LLEE-LRMLSNFQTDN-------AKLLQIFLV-GQPEFRETLQSPQLQQLRQ--R 182 (269)
T ss_pred CeEEEEECcccCCH-------H---HHHH-HHHHhCcccCC-------CCeEEEEEc-CCHHHHHHHcCchhHHHHh--h
Confidence 78999999998732 1 1222 22222211110 111233333 3332 221 12444 7
Q ss_pred cceeeeeCCCCHHHHHHHHHHHhcCCC-----ccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHH
Q 005285 336 IDRRLYIGLPDAKQRVQIFDVHSAGKQ-----LAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVD 410 (704)
Q Consensus 336 fd~~I~v~~Pd~~eR~~Il~~~l~~~~-----l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~ 410 (704)
+...+++++.+.++..+++...+.... .-.+..+..|++.+.|.. +.|..+++.+...|..++...|+.+++..
T Consensus 183 ~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p-~~i~~l~~~~~~~a~~~~~~~i~~~~v~~ 261 (269)
T TIGR03015 183 IIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP-RLINILCDRLLLSAFLEEKREIGGEEVRE 261 (269)
T ss_pred eeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc-cHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence 777899999999999999987775322 122345788899999874 55999999999999999999999999999
Q ss_pred HHHHH
Q 005285 411 VLDKQ 415 (704)
Q Consensus 411 Al~~~ 415 (704)
++...
T Consensus 262 ~~~~~ 266 (269)
T TIGR03015 262 VIAEI 266 (269)
T ss_pred HHHHh
Confidence 98763
No 165
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.18 E-value=1.2e-10 Score=107.06 Aligned_cols=122 Identities=31% Similarity=0.496 Sum_probs=82.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCC---EEEEeCccccchh---------------hhhHHHHHHHHHHHhhCCCeE
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESGLP---FVFASGAEFTDSE---------------KSGAARINEMFSIARRNAPAF 265 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g~~---~v~is~s~~~~~~---------------~~g~~~vr~lF~~Ak~~~P~I 265 (704)
+..++|+||||||||++++++|..++.+ +++++++...... .......+.++..++...|.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4679999999999999999999998775 8888888754421 234556778888998888899
Q ss_pred EEEccchhhhccCCCCChhHHHHHHH-----HHHHhcCCcccCCccccccCccEEEEEEcCC-CCCCcccccCCCcccee
Q 005285 266 VFVDEIDAIAGRHARKDPRRRATFEA-----LIAQLDGDKERTGIDRFSLRQAVIFICATNR-PDELDLEFVRPGRIDRR 339 (704)
Q Consensus 266 LfIDEiDal~~~~~~~~~e~~~~ln~-----LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~-p~~LD~aLlRpgRfd~~ 339 (704)
|||||++.+.... ....... ...... ...+..+|+++|. ....+..+.+ |++.+
T Consensus 82 iiiDei~~~~~~~------~~~~~~~~~~~~~~~~~~------------~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~ 141 (148)
T smart00382 82 LILDEITSLLDAE------QEALLLLLEELRLLLLLK------------SEKNLTVILTTNDEKDLGPALLRR--RFDRR 141 (148)
T ss_pred EEEECCcccCCHH------HHHHHHhhhhhHHHHHHH------------hcCCCEEEEEeCCCccCchhhhhh--ccceE
Confidence 9999999986421 0000000 001111 1123688888886 3344444444 88888
Q ss_pred eeeCCC
Q 005285 340 LYIGLP 345 (704)
Q Consensus 340 I~v~~P 345 (704)
+.+..+
T Consensus 142 ~~~~~~ 147 (148)
T smart00382 142 IVLLLI 147 (148)
T ss_pred EEecCC
Confidence 887665
No 166
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.16 E-value=3e-10 Score=130.03 Aligned_cols=196 Identities=14% Similarity=0.234 Sum_probs=121.0
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCC-EEEE---eCccccchh----hhhHHHHH-HHHHHHhhCCCeEEEEccchh
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESGLP-FVFA---SGAEFTDSE----KSGAARIN-EMFSIARRNAPAFVFVDEIDA 273 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g~~-~v~i---s~s~~~~~~----~~g~~~vr-~lF~~Ak~~~P~ILfIDEiDa 273 (704)
...+|||+|+||||||++|+++++.+... |+.. ++..+.... ..+...++ ..+.. ....+++|||+|.
T Consensus 235 ~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~---A~~Gil~iDEi~~ 311 (509)
T smart00350 235 GDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGGALVL---ADNGVCCIDEFDK 311 (509)
T ss_pred ccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecCccEEe---cCCCEEEEechhh
Confidence 34479999999999999999999977543 3221 222221110 00100000 01111 1246999999999
Q ss_pred hhccCCCCChhHHHHHHHHHHHhcCCc---ccCCccccccCccEEEEEEcCCCC-------------CCcccccCCCccc
Q 005285 274 IAGRHARKDPRRRATFEALIAQLDGDK---ERTGIDRFSLRQAVIFICATNRPD-------------ELDLEFVRPGRID 337 (704)
Q Consensus 274 l~~~~~~~~~e~~~~ln~LL~~ld~~~---~~~~~~~~~~~~~ViVIaaTN~p~-------------~LD~aLlRpgRfd 337 (704)
+.. .....|+..|+... ...|. ....+..+.||||+|..+ .|++++++ |||
T Consensus 312 l~~----------~~q~~L~e~me~~~i~i~k~G~-~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFd 378 (509)
T smart00350 312 MDD----------SDRTAIHEAMEQQTISIAKAGI-TTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFD 378 (509)
T ss_pred CCH----------HHHHHHHHHHhcCEEEEEeCCE-EEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC--cee
Confidence 842 24566777776533 11121 122334589999999753 58999999 999
Q ss_pred eeee-eCCCCHHHHHHHHHHHhcCCC-------------cc----------------cccc---HHHH-----HHh----
Q 005285 338 RRLY-IGLPDAKQRVQIFDVHSAGKQ-------------LA----------------EDVN---FEEL-----VFR---- 375 (704)
Q Consensus 338 ~~I~-v~~Pd~~eR~~Il~~~l~~~~-------------l~----------------~dvd---l~~L-----a~~---- 375 (704)
..+. .+.|+.+...+|.+..+.... +. +.+. ...+ ..+
T Consensus 379 Li~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~ 458 (509)
T smart00350 379 LLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDS 458 (509)
T ss_pred eEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccc
Confidence 8554 478999999888876432100 00 0000 0111 001
Q ss_pred ------ccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Q 005285 376 ------TVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414 (704)
Q Consensus 376 ------t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al~~ 414 (704)
..+.|.+.+..|++-|...|.-+++..|+.+|+..|++-
T Consensus 459 ~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l 503 (509)
T smart00350 459 QSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRL 503 (509)
T ss_pred ccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 125688889999999999998899999999999988864
No 167
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.16 E-value=6e-10 Score=119.97 Aligned_cols=169 Identities=9% Similarity=0.178 Sum_probs=115.3
Q ss_pred cccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC--------EEEEeCccc
Q 005285 169 MYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP--------FVFASGAEF 240 (704)
Q Consensus 169 ~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~--------~v~is~s~~ 240 (704)
+|+||+|++.+++.|...+. . .+.|..+||+||+|+|||++|+++|+.+... +..+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~---~--------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~-- 68 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSII---K--------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI-- 68 (313)
T ss_pred ChhhccCcHHHHHHHHHHHH---c--------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc--
Confidence 59999999988777665542 2 2567889999999999999999999976321 2222221
Q ss_pred cchhhhhHHHHHHHHHHHhh----CCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEE
Q 005285 241 TDSEKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (704)
Q Consensus 241 ~~~~~~g~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (704)
+....+...+|.+.+.+.. ....|++||++|.+. ....|.||..++.... ++++
T Consensus 69 -~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~----------~~a~naLLK~LEepp~-----------~t~~ 126 (313)
T PRK05564 69 -NKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT----------EQAQNAFLKTIEEPPK-----------GVFI 126 (313)
T ss_pred -cCCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcC----------HHHHHHHHHHhcCCCC-----------CeEE
Confidence 1111223346666554432 335699999999883 3357899999986433 3567
Q ss_pred EEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccC
Q 005285 317 ICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVG 378 (704)
Q Consensus 317 IaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G 378 (704)
|.+|+.++.+.+.+++ |+ ..+.|+.|+.++....+...... .. +..+..++..+.|
T Consensus 127 il~~~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~--~~-~~~~~~l~~~~~g 182 (313)
T PRK05564 127 ILLCENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYND--IK-EEEKKSAIAFSDG 182 (313)
T ss_pred EEEeCChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhcC--CC-HHHHHHHHHHcCC
Confidence 7777888999999998 88 58999999999988888765432 11 2234455555544
No 168
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.15 E-value=4e-10 Score=127.93 Aligned_cols=216 Identities=18% Similarity=0.240 Sum_probs=131.0
Q ss_pred ccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc-------------------
Q 005285 168 SMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES------------------- 228 (704)
Q Consensus 168 ~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~------------------- 228 (704)
.+|+||.|+..+++.+.-.. .....++|.||||||||++++++++.+
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa--------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g 254 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA--------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVG 254 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc--------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchh
Confidence 48999999987755444221 233579999999999999999998632
Q ss_pred ---------CCCEEEEeCccccch-hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcC
Q 005285 229 ---------GLPFVFASGAEFTDS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDG 298 (704)
Q Consensus 229 ---------g~~~v~is~s~~~~~-~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~ 298 (704)
..||...+++..... .+.+...-...+..| ...+|||||++.+.. ..+..|+..|+.
T Consensus 255 ~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA---~~GvLfLDEi~e~~~----------~~~~~L~~~LE~ 321 (499)
T TIGR00368 255 KLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLA---HNGVLFLDELPEFKR----------SVLDALREPIED 321 (499)
T ss_pred hhccccccccCCccccccccchhhhhCCccccchhhhhcc---CCCeEecCChhhCCH----------HHHHHHHHHHHc
Confidence 123333333322211 122211111122333 236999999998842 355666666654
Q ss_pred Ccc---cCCccccccCccEEEEEEcCCC------C-----------------CCcccccCCCccceeeeeCCCCHHH---
Q 005285 299 DKE---RTGIDRFSLRQAVIFICATNRP------D-----------------ELDLEFVRPGRIDRRLYIGLPDAKQ--- 349 (704)
Q Consensus 299 ~~~---~~~~~~~~~~~~ViVIaaTN~p------~-----------------~LD~aLlRpgRfd~~I~v~~Pd~~e--- 349 (704)
... ..+.. .....++.+|+++|.- + .+...|+. |||.++.++.++..+
T Consensus 322 ~~v~i~r~g~~-~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~~l~~ 398 (499)
T TIGR00368 322 GSISISRASAK-IFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPEKLLS 398 (499)
T ss_pred CcEEEEecCcc-eeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHHHHhc
Confidence 321 11111 1223468999999862 1 47778888 999999999765432
Q ss_pred ----------HHHHHHH------HhcCC---Ccccc-------------ccHH---HHHHhccCCCHHHHHHHHHHHHHH
Q 005285 350 ----------RVQIFDV------HSAGK---QLAED-------------VNFE---ELVFRTVGFSGADIRNLVNESGIM 394 (704)
Q Consensus 350 ----------R~~Il~~------~l~~~---~l~~d-------------vdl~---~La~~t~G~sgadL~~Lv~eA~~~ 394 (704)
|..+.+. .+.+. .+... .... .-+....++|.+....+++-|...
T Consensus 399 ~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilrvArTi 478 (499)
T TIGR00368 399 TGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILKVARTI 478 (499)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 2333221 11111 11111 1111 112234578999999999999999
Q ss_pred HHHhCCCcccHHHHHHHHH
Q 005285 395 SVRKGHSKIQQQDIVDVLD 413 (704)
Q Consensus 395 A~r~~~~~It~~dl~~Al~ 413 (704)
|.-++.+.|+.+|+.+|+.
T Consensus 479 AdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 479 ADLKEEKNISREHLAEAIE 497 (499)
T ss_pred HhhcCCCCCCHHHHHHHHh
Confidence 9999999999999999974
No 169
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.14 E-value=1.5e-09 Score=116.55 Aligned_cols=156 Identities=23% Similarity=0.344 Sum_probs=104.6
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcC------------------------CCEEEEeCccccchhhhhHHHHHHHHHH
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKESG------------------------LPFVFASGAEFTDSEKSGAARINEMFSI 257 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~g------------------------~~~v~is~s~~~~~~~~g~~~vr~lF~~ 257 (704)
+.|..+||+||||||||++|.++|+++. -.++.++.++-.... .....++.+-+.
T Consensus 22 ~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~-i~~~~vr~~~~~ 100 (325)
T COG0470 22 RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID-IIVEQVRELAEF 100 (325)
T ss_pred CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc-chHHHHHHHHHH
Confidence 3455799999999999999999999886 356667666644421 123334444333
Q ss_pred Hhh----CCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCC
Q 005285 258 ARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRP 333 (704)
Q Consensus 258 Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRp 333 (704)
... ...-|++|||+|.+.. ...|.++..|.....+ ..+|.+||.++.+-+.+++
T Consensus 101 ~~~~~~~~~~kviiidead~mt~----------~A~nallk~lEep~~~-----------~~~il~~n~~~~il~tI~S- 158 (325)
T COG0470 101 LSESPLEGGYKVVIIDEADKLTE----------DAANALLKTLEEPPKN-----------TRFILITNDPSKILPTIRS- 158 (325)
T ss_pred hccCCCCCCceEEEeCcHHHHhH----------HHHHHHHHHhccCCCC-----------eEEEEEcCChhhccchhhh-
Confidence 322 2357999999999952 4678999998775443 6888999999999988888
Q ss_pred CccceeeeeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 005285 334 GRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSV 396 (704)
Q Consensus 334 gRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~ 396 (704)
|+ ..+.|++|+........+ +..+..++... .+|+...++.....+.
T Consensus 159 -Rc-~~i~f~~~~~~~~i~~~e----------~~~l~~i~~~~----~gd~r~~i~~lq~~~~ 205 (325)
T COG0470 159 -RC-QRIRFKPPSRLEAIAWLE----------DQGLEEIAAVA----EGDARKAINPLQALAA 205 (325)
T ss_pred -cc-eeeecCCchHHHHHHHhh----------ccchhHHHHHH----HHHHHcCCCHHHHHHH
Confidence 88 578888766555554444 22344444433 3456655555444443
No 170
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.14 E-value=1e-09 Score=124.58 Aligned_cols=218 Identities=17% Similarity=0.214 Sum_probs=131.1
Q ss_pred ccCCCccccceecCcccHHHHHHHHHHhCCc--hhhh----h-------------------cCCccCceEEEEcCCCChH
Q 005285 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNP--MQYY----E-------------------RGVQFVRGVLLSGPPGTGK 217 (704)
Q Consensus 163 ~~~~~~~f~dVvG~~~~k~~L~elv~~l~~p--~~~~----~-------------------~g~~~p~gvLL~GPPGTGK 217 (704)
++..+..|.|+.|.+.+- +.++.|||.. -.|. + .+-+..+-+||+||||.||
T Consensus 263 dky~Pk~FtdLLsDe~tN---R~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGK 339 (877)
T KOG1969|consen 263 DKYRPKKFTDLLSDEKTN---RRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGK 339 (877)
T ss_pred cccChhHHHHHhcchhHH---HHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCCh
Confidence 456778899999887543 3333343321 1111 1 1223346789999999999
Q ss_pred HHHHHHHHHHcCCCEEEEeCccccchhhhhHHHHHHHHHHHh---hCCCeEEEEccchhhhccCCCCChhHHHHHHHHHH
Q 005285 218 TLFARTLAKESGLPFVFASGAEFTDSEKSGAARINEMFSIAR---RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIA 294 (704)
Q Consensus 218 T~LAraiA~e~g~~~v~is~s~~~~~~~~g~~~vr~lF~~Ak---~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~ 294 (704)
|+||+.+|+.+|..++.|++++-......-......++..-- ...|.+|+|||||-- . ...++.++.
T Consensus 340 TTLAHViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa-------~---~~~Vdvils 409 (877)
T KOG1969|consen 340 TTLAHVIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA-------P---RAAVDVILS 409 (877)
T ss_pred hHHHHHHHHhcCceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCC-------c---HHHHHHHHH
Confidence 999999999999999999999865442211111112222111 256889999999932 1 233444444
Q ss_pred HhcCC-------cccCCccccccCc---cEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc
Q 005285 295 QLDGD-------KERTGIDRFSLRQ---AVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA 364 (704)
Q Consensus 295 ~ld~~-------~~~~~~~~~~~~~---~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~ 364 (704)
.+... .......+...+. .-.||+.||... -|||+.---|..+|.|.+|...-..+-|+..+....+.
T Consensus 410 lv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr 487 (877)
T KOG1969|consen 410 LVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENMR 487 (877)
T ss_pred HHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhcccceEEEEecCCChhHHHHHHHHHHhhhcCC
Confidence 43311 1100000000000 125677788543 46664222477899999999887777777776665554
Q ss_pred cc-ccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Q 005285 365 ED-VNFEELVFRTVGFSGADIRNLVNESGIMSVRKG 399 (704)
Q Consensus 365 ~d-vdl~~La~~t~G~sgadL~~Lv~eA~~~A~r~~ 399 (704)
.+ -.+..|+..+.+ ||++.+|.....+.+..
T Consensus 488 ~d~~aL~~L~el~~~----DIRsCINtLQfLa~~~~ 519 (877)
T KOG1969|consen 488 ADSKALNALCELTQN----DIRSCINTLQFLASNVD 519 (877)
T ss_pred CCHHHHHHHHHHhcc----hHHHHHHHHHHHHHhcc
Confidence 33 235666666554 99999999988886543
No 171
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.11 E-value=3.1e-09 Score=107.22 Aligned_cols=194 Identities=19% Similarity=0.217 Sum_probs=131.6
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccc
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEF 240 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~ 240 (704)
....+...+++|.+..|+.|-+-...+... .+..+|||+|..|||||+|+||+-++. |..++.|+-.++
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G--------~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl 124 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRNTEQFAEG--------LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDL 124 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHHHHHHHcC--------CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHH
Confidence 455689999999999887765544332222 367789999999999999999997765 566777776665
Q ss_pred cchhhhhHHHHHHHHHHHhhC-CCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEE
Q 005285 241 TDSEKSGAARINEMFSIARRN-APAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICA 319 (704)
Q Consensus 241 ~~~~~~g~~~vr~lF~~Ak~~-~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaa 319 (704)
.. +-.+++..+.. ..-|||+|++- + ++.+.....|-..|+|.... ...+|+|.+|
T Consensus 125 ~~--------Lp~l~~~Lr~~~~kFIlFcDDLS-F--------e~gd~~yK~LKs~LeG~ve~-------rP~NVl~YAT 180 (287)
T COG2607 125 AT--------LPDLVELLRARPEKFILFCDDLS-F--------EEGDDAYKALKSALEGGVEG-------RPANVLFYAT 180 (287)
T ss_pred hh--------HHHHHHHHhcCCceEEEEecCCC-C--------CCCchHHHHHHHHhcCCccc-------CCCeEEEEEe
Confidence 44 44566666553 36799999873 1 11223456677778875533 3567999999
Q ss_pred cCCCCCCcccc--------------------cCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccc-cH----HHHHH
Q 005285 320 TNRPDELDLEF--------------------VRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDV-NF----EELVF 374 (704)
Q Consensus 320 TN~p~~LD~aL--------------------lRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dv-dl----~~La~ 374 (704)
+|+...|+.-+ --..||...+.|.+++.++-.+|+..+++...++-+. .+ -+-|.
T Consensus 181 SNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt 260 (287)
T COG2607 181 SNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWAT 260 (287)
T ss_pred cCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99976655211 1124999999999999999999999998766654321 11 12233
Q ss_pred hccCCCHHHHHHHHH
Q 005285 375 RTVGFSGADIRNLVN 389 (704)
Q Consensus 375 ~t~G~sgadL~~Lv~ 389 (704)
...|-||+--.+.++
T Consensus 261 ~rg~RSGR~A~QF~~ 275 (287)
T COG2607 261 TRGGRSGRVAWQFIR 275 (287)
T ss_pred hcCCCccHhHHHHHH
Confidence 345556655544444
No 172
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.11 E-value=5.5e-10 Score=127.73 Aligned_cols=216 Identities=20% Similarity=0.266 Sum_probs=124.6
Q ss_pred CccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHH-----------cCCCEEEE
Q 005285 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKE-----------SGLPFVFA 235 (704)
Q Consensus 167 ~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e-----------~g~~~v~i 235 (704)
..+|++++|.....+.+.+.+..+- ..+..|||+|++||||+++|++|-.. .+.||+.+
T Consensus 215 ~~~f~~iiG~S~~m~~~~~~i~~~A----------~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 215 RYVLGDLLGQSPQMEQVRQTILLYA----------RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 3579999999876655555544321 23457999999999999999999776 46799999
Q ss_pred eCccccchhhhh------------HH--HHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcc
Q 005285 236 SGAEFTDSEKSG------------AA--RINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKE 301 (704)
Q Consensus 236 s~s~~~~~~~~g------------~~--~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~ 301 (704)
+|+.+.+..... +. .-..+|+.|. ...||||||+.|.. .....|+..++....
T Consensus 285 nCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp~----------~~Q~kLl~~L~e~~~ 351 (538)
T PRK15424 285 NCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH---GGTLFLDEIGEMPL----------PLQTRLLRVLEEKEV 351 (538)
T ss_pred ecccCChhhHHHHhcCCccccccCccccccCCchhccC---CCEEEEcChHhCCH----------HHHHHHHhhhhcCeE
Confidence 999876532110 00 0112454442 35899999999952 245667776654322
Q ss_pred cCCccccccCccEEEEEEcCCCCCCcccccCCCccce-------eeeeCCCCHHHHHH----HHHHHhcC------CCcc
Q 005285 302 RTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDR-------RLYIGLPDAKQRVQ----IFDVHSAG------KQLA 364 (704)
Q Consensus 302 ~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~-------~I~v~~Pd~~eR~~----Il~~~l~~------~~l~ 364 (704)
..-+.......+|.+|++||.. |... ...|+|.. .+.+..|...+|.+ +++.++.. ..+.
T Consensus 352 ~r~G~~~~~~~dvRiIaat~~~--L~~~-v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~ 428 (538)
T PRK15424 352 TRVGGHQPVPVDVRVISATHCD--LEED-VRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFS 428 (538)
T ss_pred EecCCCceeccceEEEEecCCC--HHHH-HhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCC
Confidence 1111111223457899999864 2211 12234421 56777888777753 33444332 1222
Q ss_pred cccc------HHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHH
Q 005285 365 EDVN------FEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDI 408 (704)
Q Consensus 365 ~dvd------l~~La~~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl 408 (704)
.+.- +..|....---+-++|+|+++++++.+.......|+.+++
T Consensus 429 ~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~~~~~~~~i~~~~l 478 (538)
T PRK15424 429 AALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFLSVEPTPDLTPQFL 478 (538)
T ss_pred HHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcCCCCcCccCHHHh
Confidence 2110 1223333222356888899988887653222234555544
No 173
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.10 E-value=1.3e-09 Score=126.65 Aligned_cols=199 Identities=21% Similarity=0.298 Sum_probs=128.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcC--CCEEEEeCccccchhhhhHHHHHHHHHHH---------hhCCCeEEEEccch
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESG--LPFVFASGAEFTDSEKSGAARINEMFSIA---------RRNAPAFVFVDEID 272 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g--~~~v~is~s~~~~~~~~g~~~vr~lF~~A---------k~~~P~ILfIDEiD 272 (704)
-.+|||.|+||||||++|++++..++ .||+.+...........+. .+...+... .+....+||||||+
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i-dl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~ 94 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI-DVEESLAGGQRVTQPGLLDEAPRGVLYVDMAN 94 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch-hhhhhhhcCcccCCCCCeeeCCCCcEeccchh
Confidence 35899999999999999999999775 4788887643322211111 111111100 01123599999999
Q ss_pred hhhccCCCCChhHHHHHHHHHHHhcCCc---ccCCccccccCccEEEEEEcCCCC---CCcccccCCCccceeeeeCC-C
Q 005285 273 AIAGRHARKDPRRRATFEALIAQLDGDK---ERTGIDRFSLRQAVIFICATNRPD---ELDLEFVRPGRIDRRLYIGL-P 345 (704)
Q Consensus 273 al~~~~~~~~~e~~~~ln~LL~~ld~~~---~~~~~~~~~~~~~ViVIaaTN~p~---~LD~aLlRpgRfd~~I~v~~-P 345 (704)
.+.. .+++.|+..|+... ...+. .......+.||+|+|..+ .|+++|+. ||+.++.+.. |
T Consensus 95 rl~~----------~~q~~Ll~al~~g~v~i~r~G~-~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~~ 161 (589)
T TIGR02031 95 LLDD----------GLSNRLLQALDEGVVIVEREGI-SVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDVA 161 (589)
T ss_pred hCCH----------HHHHHHHHHHHcCCeEEEECCC-ceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCCC
Confidence 9853 36788888887543 11121 123344688999998765 78899999 9998887764 6
Q ss_pred CHHHHHHHHHHHhcC-------------------------CCccccccHHHHHHh--ccCCC-HHHHHHHHHHHHHHHHH
Q 005285 346 DAKQRVQIFDVHSAG-------------------------KQLAEDVNFEELVFR--TVGFS-GADIRNLVNESGIMSVR 397 (704)
Q Consensus 346 d~~eR~~Il~~~l~~-------------------------~~l~~dvdl~~La~~--t~G~s-gadL~~Lv~eA~~~A~r 397 (704)
+.++|.+|++.+... ..+.++ .+..++.. ..|.+ .+.--.+++-|...|+-
T Consensus 162 ~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~-~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aal 240 (589)
T TIGR02031 162 SQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAE-QVKELVLTAASLGISGHRADLFAVRAAKAHAAL 240 (589)
T ss_pred CHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHH-HHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHH
Confidence 788899988765421 111111 12222222 23443 34444677888888999
Q ss_pred hCCCcccHHHHHHHHHHHHH
Q 005285 398 KGHSKIQQQDIVDVLDKQLL 417 (704)
Q Consensus 398 ~~~~~It~~dl~~Al~~~~~ 417 (704)
+|+..|+.+|+..|+.-++.
T Consensus 241 ~gr~~V~~~Dv~~a~~lvl~ 260 (589)
T TIGR02031 241 HGRTEVTEEDLKLAVELVLL 260 (589)
T ss_pred hCCCCCCHHHHHHHHHHHhh
Confidence 99999999999999998764
No 174
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.10 E-value=6.7e-10 Score=123.05 Aligned_cols=129 Identities=25% Similarity=0.346 Sum_probs=82.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCC-----C--EEEEe----Cccccchh---hhhHH----HHHHHHHHHhhC--CC
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESGL-----P--FVFAS----GAEFTDSE---KSGAA----RINEMFSIARRN--AP 263 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g~-----~--~v~is----~s~~~~~~---~~g~~----~vr~lF~~Ak~~--~P 263 (704)
.++++|+||||||||++|+++|..+.. . ++.++ ..+++... +.+.. .+..+...|+.. .|
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~ 273 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKK 273 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCC
Confidence 468999999999999999999987742 1 22222 12333211 11211 234455666653 58
Q ss_pred eEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcc-----------cCCccccccCccEEEEEEcCCCC----CCcc
Q 005285 264 AFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKE-----------RTGIDRFSLRQAVIFICATNRPD----ELDL 328 (704)
Q Consensus 264 ~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~-----------~~~~~~~~~~~~ViVIaaTN~p~----~LD~ 328 (704)
+|||||||+.-. ..+.+..++..|+.... ....+.+....++.||||+|..| .+|.
T Consensus 274 ~vliIDEINRan---------i~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~ 344 (459)
T PRK11331 274 YVFIIDEINRAN---------LSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDY 344 (459)
T ss_pred cEEEEehhhccC---------HHHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchhhccH
Confidence 999999998652 22344555555543210 01123467778999999999988 7999
Q ss_pred cccCCCccceeeeeCC
Q 005285 329 EFVRPGRIDRRLYIGL 344 (704)
Q Consensus 329 aLlRpgRfd~~I~v~~ 344 (704)
||+| ||. .|++.+
T Consensus 345 AlrR--RF~-fi~i~p 357 (459)
T PRK11331 345 ALRR--RFS-FIDIEP 357 (459)
T ss_pred HHHh--hhh-eEEecC
Confidence 9999 994 466654
No 175
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.10 E-value=9.3e-10 Score=128.08 Aligned_cols=103 Identities=16% Similarity=0.264 Sum_probs=68.0
Q ss_pred CccEEEEEEcCCC--CCCcccccCCCccc---eeeeeCC--C-CHHHHHHHHHHH---hcCCCcccccc---HHHHH---
Q 005285 311 RQAVIFICATNRP--DELDLEFVRPGRID---RRLYIGL--P-DAKQRVQIFDVH---SAGKQLAEDVN---FEELV--- 373 (704)
Q Consensus 311 ~~~ViVIaaTN~p--~~LD~aLlRpgRfd---~~I~v~~--P-d~~eR~~Il~~~---l~~~~l~~dvd---l~~La--- 373 (704)
+..+.||+++|.. ..+|+.|+. ||+ ..+.|+. | +.+.|.++.+.. ++.....+.++ +..+.
T Consensus 266 p~dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~ 343 (608)
T TIGR00764 266 PCDFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREA 343 (608)
T ss_pred ccceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHH
Confidence 3468899999874 578999999 998 5566543 4 455665554432 22221111222 23332
Q ss_pred HhccC------CCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Q 005285 374 FRTVG------FSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQ 415 (704)
Q Consensus 374 ~~t~G------~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al~~~ 415 (704)
.+..| .+.++|.+++++|...|..++...|+.+|+.+|++..
T Consensus 344 ~R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~ 391 (608)
T TIGR00764 344 QRRAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLA 391 (608)
T ss_pred HHHHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHH
Confidence 22122 3579999999999888888888899999999998864
No 176
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.09 E-value=1.6e-10 Score=113.72 Aligned_cols=119 Identities=24% Similarity=0.374 Sum_probs=80.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCC----CEEEEeCccccchhhhhHHHHHHHHH------HHhhCCCeEEEEccchh
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESGL----PFVFASGAEFTDSEKSGAARINEMFS------IARRNAPAFVFVDEIDA 273 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g~----~~v~is~s~~~~~~~~g~~~vr~lF~------~Ak~~~P~ILfIDEiDa 273 (704)
-..+||.||+|||||.+|+++|..+.. +++.++++++.... .....+..+.. .+... .||||||||.
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~-~~~~~~~~l~~~~~~~v~~~~~--gVVllDEidK 79 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGD-DVESSVSKLLGSPPGYVGAEEG--GVVLLDEIDK 79 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHH-HCSCHCHHHHHHTTCHHHHHHH--TEEEEETGGG
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccc-hHHhhhhhhhhcccceeeccch--hhhhhHHHhh
Confidence 346789999999999999999999997 99999999998821 11111112211 12222 3999999999
Q ss_pred hhccCCCC-ChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCC
Q 005285 274 IAGRHARK-DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDE 325 (704)
Q Consensus 274 l~~~~~~~-~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~ 325 (704)
...+...+ +-....+++.||..|++-.-.....+...-.++++|+|+|--..
T Consensus 80 a~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~ 132 (171)
T PF07724_consen 80 AHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAE 132 (171)
T ss_dssp CSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTH
T ss_pred ccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccc
Confidence 97643322 33445778889998987544332223344567999999997553
No 177
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.08 E-value=3.5e-10 Score=125.82 Aligned_cols=216 Identities=21% Similarity=0.262 Sum_probs=133.3
Q ss_pred CCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCcccc
Q 005285 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFT 241 (704)
Q Consensus 165 ~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~ 241 (704)
....+|++++|....-..+.+... ..++.+-.|||.|.+||||.++|++|-+.+ +-||+.+||..+.
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~~ak----------r~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLELAK----------RIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred ccccchhhhccCCHHHHHHHHHHH----------hhcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 456789999998754333333222 124567789999999999999999997654 6799999999977
Q ss_pred chhhh------------hHHH--HHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccc
Q 005285 242 DSEKS------------GAAR--INEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDR 307 (704)
Q Consensus 242 ~~~~~------------g~~~--vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~ 307 (704)
+.... |+.+ -..+|+.|.. .-||||||..+. ......||..++......-++.
T Consensus 309 e~LlESELFGye~GAFTGA~~~GK~GlfE~A~g---GTLFLDEIgemp----------l~LQaKLLRVLQEkei~rvG~t 375 (560)
T COG3829 309 ETLLESELFGYEKGAFTGASKGGKPGLFELANG---GTLFLDEIGEMP----------LPLQAKLLRVLQEKEIERVGGT 375 (560)
T ss_pred HHHHHHHHhCcCCccccccccCCCCcceeeccC---CeEEehhhccCC----------HHHHHHHHHHHhhceEEecCCC
Confidence 54211 2222 2345555533 369999999884 2355678877776543333333
Q ss_pred cccCccEEEEEEcCCCCCCcccccCCCccce-------eeeeCCCCHHHHHH----HHHHHhc----CCC-----ccccc
Q 005285 308 FSLRQAVIFICATNRPDELDLEFVRPGRIDR-------RLYIGLPDAKQRVQ----IFDVHSA----GKQ-----LAEDV 367 (704)
Q Consensus 308 ~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~-------~I~v~~Pd~~eR~~----Il~~~l~----~~~-----l~~dv 367 (704)
...+-.|.||+|||+. |-.++- .|+|-. ++.+..|...+|.+ +...++. ..+ +.++
T Consensus 376 ~~~~vDVRIIAATN~n--L~~~i~-~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~- 451 (560)
T COG3829 376 KPIPVDVRIIAATNRN--LEKMIA-EGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPD- 451 (560)
T ss_pred CceeeEEEEEeccCcC--HHHHHh-cCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHH-
Confidence 3445679999999973 222222 245421 67788888877743 2222222 111 2222
Q ss_pred cHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHH
Q 005285 368 NFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIV 409 (704)
Q Consensus 368 dl~~La~~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~ 409 (704)
.+..|.+..---+-++|+|++..+...+- ....|+.+|+-
T Consensus 452 a~~~L~~y~WPGNVRELeNviER~v~~~~--~~~~I~~~~lp 491 (560)
T COG3829 452 ALALLLRYDWPGNVRELENVIERAVNLVE--SDGLIDADDLP 491 (560)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHhccC--Ccceeehhhcc
Confidence 23344443322356889999998887543 33447777765
No 178
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.5e-09 Score=119.20 Aligned_cols=144 Identities=22% Similarity=0.342 Sum_probs=105.2
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCEEEE-eCccccchh-hhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCC
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFA-SGAEFTDSE-KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR 280 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~i-s~s~~~~~~-~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~ 280 (704)
+-.++||+||||+|||.||-.+|...+.||+.+ |..+..... ...-..++..|+.|.+..-+||++|+|+.|..-..-
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vpI 616 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVPI 616 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhccccc
Confidence 456899999999999999999999999999965 444444442 222345889999999998899999999998643222
Q ss_pred CChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCcc-cccCCCccceeeeeCCCCH-HHHHHHHHH
Q 005285 281 KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDL-EFVRPGRIDRRLYIGLPDA-KQRVQIFDV 356 (704)
Q Consensus 281 ~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~-aLlRpgRfd~~I~v~~Pd~-~eR~~Il~~ 356 (704)
+......++..|+..+....... ...+|++||.+.+.|.. .++. .|+-.|.+|..+. ++..+++..
T Consensus 617 GPRfSN~vlQaL~VllK~~ppkg--------~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 617 GPRFSNLVLQALLVLLKKQPPKG--------RKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred CchhhHHHHHHHHHHhccCCCCC--------ceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHHHHHH
Confidence 33345567777888877654321 24788888888766543 4555 8988999988765 666666653
No 179
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.06 E-value=3.1e-09 Score=114.44 Aligned_cols=182 Identities=17% Similarity=0.221 Sum_probs=122.0
Q ss_pred cccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC-----------------
Q 005285 169 MYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP----------------- 231 (704)
Q Consensus 169 ~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~----------------- 231 (704)
.|++|+|++++++.|...+.. .+.|..+||+||+|+||+++|+++|..+-..
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-----------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-----------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 589999999998888877653 2456799999999999999999999875221
Q ss_pred -EEEEeCccccc----------hh--------hhhHHHHHHHHHHHhh----CCCeEEEEccchhhhccCCCCChhHHHH
Q 005285 232 -FVFASGAEFTD----------SE--------KSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRAT 288 (704)
Q Consensus 232 -~v~is~s~~~~----------~~--------~~g~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~ 288 (704)
++.+....... .. .-....+|.+-+.+.. ....|++||++|.+. ...
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~----------~~a 140 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN----------EAA 140 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC----------HHH
Confidence 12222110000 00 0112345666544432 335799999999984 346
Q ss_pred HHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcccccc
Q 005285 289 FEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVN 368 (704)
Q Consensus 289 ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvd 368 (704)
.|.||+.|+... . .++|..|+.++.|-|.+++ |+ ..+.|++|+.++..++|+........ +.+
T Consensus 141 aNaLLK~LEEPp-~-----------~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~~--~~~ 203 (314)
T PRK07399 141 ANALLKTLEEPG-N-----------GTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEIL--NIN 203 (314)
T ss_pred HHHHHHHHhCCC-C-----------CeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhccccc--hhH
Confidence 789999998744 2 3667778889999999998 88 68999999999999999865432211 223
Q ss_pred HHHHHHhccCCCHHHHHHHHH
Q 005285 369 FEELVFRTVGFSGADIRNLVN 389 (704)
Q Consensus 369 l~~La~~t~G~sgadL~~Lv~ 389 (704)
+..++....| +++...++++
T Consensus 204 ~~~l~~~a~G-s~~~al~~l~ 223 (314)
T PRK07399 204 FPELLALAQG-SPGAAIANIE 223 (314)
T ss_pred HHHHHHHcCC-CHHHHHHHHH
Confidence 4566666555 4444433433
No 180
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=5e-10 Score=116.78 Aligned_cols=145 Identities=26% Similarity=0.397 Sum_probs=95.5
Q ss_pred ceecCcccHHHHHHHHHHhCCchhhhhcC-------Ccc-CceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccch
Q 005285 172 EVVLGGDVWDLLDELMIYMGNPMQYYERG-------VQF-VRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS 243 (704)
Q Consensus 172 dVvG~~~~k~~L~elv~~l~~p~~~~~~g-------~~~-p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~ 243 (704)
-|+|++.+|+.|.-.|.. .|.++. ... -.+|||.||.|+|||+||+.+|+.+++||...++..+.+.
T Consensus 62 YVIGQe~AKKvLsVAVYN-----HYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEA 136 (408)
T COG1219 62 YVIGQEQAKKVLSVAVYN-----HYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEA 136 (408)
T ss_pred heecchhhhceeeeeehh-----HHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhc
Confidence 478999999877655421 122221 111 3579999999999999999999999999999999999887
Q ss_pred hhhhH--H-HHHHHHHH-----HhhCCCeEEEEccchhhhccCCC----CChhHHHHHHHHHHHhcCCcccC--Cccccc
Q 005285 244 EKSGA--A-RINEMFSI-----ARRNAPAFVFVDEIDAIAGRHAR----KDPRRRATFEALIAQLDGDKERT--GIDRFS 309 (704)
Q Consensus 244 ~~~g~--~-~vr~lF~~-----Ak~~~P~ILfIDEiDal~~~~~~----~~~e~~~~ln~LL~~ld~~~~~~--~~~~~~ 309 (704)
..+|+ . .+-.+... ++.. ..||+|||||.++.++.+ .+-..+.+...||..++|...+- .+.+..
T Consensus 137 GYVGEDVENillkLlqaadydV~rAe-rGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKH 215 (408)
T COG1219 137 GYVGEDVENILLKLLQAADYDVERAE-RGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKH 215 (408)
T ss_pred cccchhHHHHHHHHHHHcccCHHHHh-CCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCC
Confidence 43332 2 23334332 2232 469999999999866532 23334567789999999864331 122333
Q ss_pred cCccEEEEEEcCC
Q 005285 310 LRQAVIFICATNR 322 (704)
Q Consensus 310 ~~~~ViVIaaTN~ 322 (704)
+.+.++-|=|+|-
T Consensus 216 P~Qe~iqvDT~NI 228 (408)
T COG1219 216 PQQEFIQVDTSNI 228 (408)
T ss_pred CccceEEEcccce
Confidence 4444555555553
No 181
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.03 E-value=4.1e-09 Score=114.10 Aligned_cols=149 Identities=19% Similarity=0.260 Sum_probs=103.6
Q ss_pred CccCceEEEEcCCCChHHHHHHHHHHHcCCC------------------------EEEEeCccccchhhhhHHHHHHHHH
Q 005285 201 VQFVRGVLLSGPPGTGKTLFARTLAKESGLP------------------------FVFASGAEFTDSEKSGAARINEMFS 256 (704)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~------------------------~v~is~s~~~~~~~~g~~~vr~lF~ 256 (704)
.+.|..+||+||+|+|||++|+++|+.+... ++.+...+-. ...+...+|.+.+
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~--~~i~id~iR~l~~ 96 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEAD--KTIKVDQVRELVS 96 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCC--CCCCHHHHHHHHH
Confidence 4578899999999999999999999976431 2222211100 0123345666655
Q ss_pred HHhh----CCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCcccccC
Q 005285 257 IARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVR 332 (704)
Q Consensus 257 ~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlR 332 (704)
.+.. ....|++||++|.+. ....|.||+.|+.-. .++++|.+|+.++.|.|.+++
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m~----------~~aaNaLLK~LEEPp-----------~~~~fiL~t~~~~~ll~TI~S 155 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAMN----------RNAANALLKSLEEPS-----------GDTVLLLISHQPSRLLPTIKS 155 (328)
T ss_pred HHhhccccCCCeEEEECChhhCC----------HHHHHHHHHHHhCCC-----------CCeEEEEEECChhhCcHHHHh
Confidence 4443 345689999999994 347899999998743 237888999999999999999
Q ss_pred CCccceeeeeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccC
Q 005285 333 PGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVG 378 (704)
Q Consensus 333 pgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G 378 (704)
|+ ..+.|++|+.++..+.+...... ..+.+...++....|
T Consensus 156 --Rc-~~~~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~G 195 (328)
T PRK05707 156 --RC-QQQACPLPSNEESLQWLQQALPE---SDERERIELLTLAGG 195 (328)
T ss_pred --hc-eeeeCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCC
Confidence 99 56999999999998888765321 122233445555555
No 182
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.03 E-value=2.3e-09 Score=122.65 Aligned_cols=218 Identities=17% Similarity=0.155 Sum_probs=124.6
Q ss_pred CccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHH---cCCCEEEEeCccccch
Q 005285 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEFTDS 243 (704)
Q Consensus 167 ~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e---~g~~~v~is~s~~~~~ 243 (704)
..+|++++|.....+.+.+.+..+- .....|||+|++||||+++|++|... .+.||+.++|..+.+.
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A----------~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYA----------RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 4789999999876655555543321 23467999999999999999999765 4679999999987653
Q ss_pred hhhh------------HH--HHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccc
Q 005285 244 EKSG------------AA--RINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFS 309 (704)
Q Consensus 244 ~~~g------------~~--~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~ 309 (704)
.... +. .-..+|+.|. ...||||||+.|.. .....|+..++......-.....
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp~----------~~Q~~Ll~~L~~~~~~r~g~~~~ 344 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEMPL----------PLQTRLLRVLEEREVVRVGGTEP 344 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcC---CceEEecChHhCCH----------HHHHHHHHHHhcCcEEecCCCce
Confidence 2110 00 0123444442 35899999999942 24566676665432111111112
Q ss_pred cCccEEEEEEcCCCC--CCcccccCCC---ccceeeeeCCCCHHHHHH----HHHHHhcCC------CccccccHHH---
Q 005285 310 LRQAVIFICATNRPD--ELDLEFVRPG---RIDRRLYIGLPDAKQRVQ----IFDVHSAGK------QLAEDVNFEE--- 371 (704)
Q Consensus 310 ~~~~ViVIaaTN~p~--~LD~aLlRpg---Rfd~~I~v~~Pd~~eR~~----Il~~~l~~~------~l~~dvdl~~--- 371 (704)
...++.+|++||..- .+....+|+. |+. .+.+..|...+|.+ ++..++... ++.++ .+..
T Consensus 345 ~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~-~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~-a~~~~~~ 422 (526)
T TIGR02329 345 VPVDVRVVAATHCALTTAVQQGRFRRDLFYRLS-ILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEA-AAQVLAG 422 (526)
T ss_pred eeecceEEeccCCCHHHHhhhcchhHHHHHhcC-CcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHH-HHHHhHH
Confidence 233578999987642 2222222211 231 46677777777653 333333321 12211 1122
Q ss_pred ----HHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHH
Q 005285 372 ----LVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIV 409 (704)
Q Consensus 372 ----La~~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~ 409 (704)
|....---+-++|+|+++.++..+.......|+.+++.
T Consensus 423 ~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~ 464 (526)
T TIGR02329 423 VADPLQRYPWPGNVRELRNLVERLALELSAMPAGALTPDVLR 464 (526)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHhcccCCCCccCHHHhh
Confidence 43333333567888888888876532223467777653
No 183
>PRK04132 replication factor C small subunit; Provisional
Probab=99.03 E-value=3.9e-09 Score=125.48 Aligned_cols=170 Identities=17% Similarity=0.192 Sum_probs=120.4
Q ss_pred EEEc--CCCChHHHHHHHHHHHc-----CCCEEEEeCccccchhhhhHHHHHHHHHHHhhC------CCeEEEEccchhh
Q 005285 208 LLSG--PPGTGKTLFARTLAKES-----GLPFVFASGAEFTDSEKSGAARINEMFSIARRN------APAFVFVDEIDAI 274 (704)
Q Consensus 208 LL~G--PPGTGKT~LAraiA~e~-----g~~~v~is~s~~~~~~~~g~~~vr~lF~~Ak~~------~P~ILfIDEiDal 274 (704)
+..| |++.|||++|+++|+++ +.+++.+|+++.... ..+|.+...+... ...|+||||+|.|
T Consensus 568 ~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgi-----d~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~L 642 (846)
T PRK04132 568 FIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGI-----NVIREKVKEFARTKPIGGASFKIIFLDEADAL 642 (846)
T ss_pred hhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccH-----HHHHHHHHHHHhcCCcCCCCCEEEEEECcccC
Confidence 5568 99999999999999997 568999999985322 2455554443322 2369999999999
Q ss_pred hccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHH
Q 005285 275 AGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIF 354 (704)
Q Consensus 275 ~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il 354 (704)
.. ...+.|+..|+.... .+.+|++||.+..+.+++++ || ..+.|++|+.++....+
T Consensus 643 t~----------~AQnALLk~lEep~~-----------~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L 698 (846)
T PRK04132 643 TQ----------DAQQALRRTMEMFSS-----------NVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRL 698 (846)
T ss_pred CH----------HHHHHHHHHhhCCCC-----------CeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHH
Confidence 42 357889999986443 36899999999999999998 88 68999999999999888
Q ss_pred HHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 005285 355 DVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (704)
Q Consensus 355 ~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al 412 (704)
+..+.+..+. ++..+..++..+.| +.+..-++++.++ .. ...|+.+++....
T Consensus 699 ~~I~~~Egi~i~~e~L~~Ia~~s~G-DlR~AIn~Lq~~~---~~--~~~It~~~V~~~~ 751 (846)
T PRK04132 699 RYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAA---AL--DDKITDENVFLVA 751 (846)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH---Hh--cCCCCHHHHHHHh
Confidence 8776644432 34457788887776 2333334444333 21 2457877765443
No 184
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.03 E-value=3.9e-09 Score=114.50 Aligned_cols=149 Identities=13% Similarity=0.130 Sum_probs=105.7
Q ss_pred cccceec-CcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC----------------
Q 005285 169 MYKEVVL-GGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP---------------- 231 (704)
Q Consensus 169 ~f~dVvG-~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~---------------- 231 (704)
.|+.|+| ++.+.+.|+..+. . .+.|..+||+||+|+|||++|+++|+.+-.+
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~---~--------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIA---K--------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHH---c--------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 4788888 6767776665543 2 2567889999999999999999999875321
Q ss_pred --------EEEEeCccccchhhhhHHHHHHHHHHHh----hCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCC
Q 005285 232 --------FVFASGAEFTDSEKSGAARINEMFSIAR----RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGD 299 (704)
Q Consensus 232 --------~v~is~s~~~~~~~~g~~~vr~lF~~Ak----~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~ 299 (704)
+..+... ....+...+|.+.+.+. .....|++|||+|.+. ....|.||+.|+..
T Consensus 72 ~~~~~hpD~~~i~~~----~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~----------~~a~NaLLK~LEEP 137 (329)
T PRK08058 72 IDSGNHPDVHLVAPD----GQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT----------ASAANSLLKFLEEP 137 (329)
T ss_pred HhcCCCCCEEEeccc----cccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC----------HHHHHHHHHHhcCC
Confidence 2222111 00112334666555443 2234699999999884 33678999999874
Q ss_pred cccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHH
Q 005285 300 KERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDV 356 (704)
Q Consensus 300 ~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~ 356 (704)
.. .+++|.+|+.+..|.+.+++ |+ ..++|.+|+.++..++++.
T Consensus 138 p~-----------~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 138 SG-----------GTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred CC-----------CceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 43 36777788888999999998 88 6899999999998887764
No 185
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=5.2e-09 Score=122.25 Aligned_cols=204 Identities=17% Similarity=0.212 Sum_probs=135.3
Q ss_pred CCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc----------CCCEEEE
Q 005285 166 TKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES----------GLPFVFA 235 (704)
Q Consensus 166 ~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~----------g~~~v~i 235 (704)
..-.++-|+|.++ +++..+..|... ...+-+|.|+||+|||.++..+|... +..+++.
T Consensus 165 r~gklDPvIGRd~---EI~r~iqIL~RR---------~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sL 232 (786)
T COG0542 165 REGKLDPVIGRDE---EIRRTIQILSRR---------TKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSL 232 (786)
T ss_pred hcCCCCCCcChHH---HHHHHHHHHhcc---------CCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEe
Confidence 3456888999884 344444444333 23457899999999999999999854 4567888
Q ss_pred eCccccch---hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCc
Q 005285 236 SGAEFTDS---EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQ 312 (704)
Q Consensus 236 s~s~~~~~---~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~ 312 (704)
+.+.++.. -|..+.+++.+.+..++..+.||||||||.+.+.....+. .-..-|-|--.|.. .
T Consensus 233 D~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~-a~DAaNiLKPaLAR-------------G 298 (786)
T COG0542 233 DLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGG-AMDAANLLKPALAR-------------G 298 (786)
T ss_pred cHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccccc-ccchhhhhHHHHhc-------------C
Confidence 88887764 3678999999999999888999999999999865432221 12223333333332 1
Q ss_pred cEEEEEEcCCCC-----CCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-----ccccHHHHHHhc-----c
Q 005285 313 AVIFICATNRPD-----ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-----EDVNFEELVFRT-----V 377 (704)
Q Consensus 313 ~ViVIaaTN~p~-----~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-----~dvdl~~La~~t-----~ 377 (704)
.+-+|+||..-+ .-|+||-| || ..|.+..|+.++-..||+-.-...... .|-.+...+..+ .
T Consensus 299 eL~~IGATT~~EYRk~iEKD~AL~R--RF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~d 375 (786)
T COG0542 299 ELRCIGATTLDEYRKYIEKDAALER--RF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPD 375 (786)
T ss_pred CeEEEEeccHHHHHHHhhhchHHHh--cC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhccc
Confidence 267888885433 35899999 99 479999999999999998543322211 122233333332 2
Q ss_pred CCCHHHHHHHHHHHHHHHHHh
Q 005285 378 GFSGADIRNLVNESGIMSVRK 398 (704)
Q Consensus 378 G~sgadL~~Lv~eA~~~A~r~ 398 (704)
-|-+.---.|+.+|+.....+
T Consensus 376 R~LPDKAIDLiDeA~a~~~l~ 396 (786)
T COG0542 376 RFLPDKAIDLLDEAGARVRLE 396 (786)
T ss_pred CCCCchHHHHHHHHHHHHHhc
Confidence 333444446778777665443
No 186
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.01 E-value=2.8e-09 Score=115.31 Aligned_cols=172 Identities=10% Similarity=0.104 Sum_probs=109.3
Q ss_pred ccc-ceecCcccHHHHHHHHHHhCCchhhhhcCC-ccCceEEEEcCCCChHHHHHHHHHHHcCC-------CEEEEeC--
Q 005285 169 MYK-EVVLGGDVWDLLDELMIYMGNPMQYYERGV-QFVRGVLLSGPPGTGKTLFARTLAKESGL-------PFVFASG-- 237 (704)
Q Consensus 169 ~f~-dVvG~~~~k~~L~elv~~l~~p~~~~~~g~-~~p~gvLL~GPPGTGKT~LAraiA~e~g~-------~~v~is~-- 237 (704)
-|+ +++|++++ +.+++++++... .|. ...+.++|+||||||||+||+++|+.++. |++.+..
T Consensus 48 ~F~~~~~G~~~~---i~~lv~~l~~~a----~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~ 120 (361)
T smart00763 48 FFDHDFFGMEEA---IERFVNYFKSAA----QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNG 120 (361)
T ss_pred ccchhccCcHHH---HHHHHHHHHHHH----hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecC
Confidence 466 89999866 556666665553 222 34577899999999999999999999987 9999988
Q ss_pred --ccccch-hhhhHHHHHHHHHHHhhC-----------------------------------------------------
Q 005285 238 --AEFTDS-EKSGAARINEMFSIARRN----------------------------------------------------- 261 (704)
Q Consensus 238 --s~~~~~-~~~g~~~vr~lF~~Ak~~----------------------------------------------------- 261 (704)
+.+.+. .+......|..|...-.-
T Consensus 121 ~~sp~~e~Pl~l~p~~~r~~~~~~~~~~~~~~~~~l~p~c~~~l~~e~~gd~~~~~V~~~~~s~~~~~gi~~~~P~D~~~ 200 (361)
T smart00763 121 EESPMHEDPLHLFPDELREDLEDEYGIPRRRLEGDLSPWCRKRLDEEYGGDIEKFEVVRVNFSELRRIGIGKFEPKDENN 200 (361)
T ss_pred CCCCCccCCcccCCHHHHHHHHHHhCCChhhcCCCCCHHHHHHHHHHhCCCcceEEEEEecCCeecceEEEEECCCCCCc
Confidence 655544 344444444444322100
Q ss_pred -----------------------------------CCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcc
Q 005285 262 -----------------------------------APAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGID 306 (704)
Q Consensus 262 -----------------------------------~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~ 306 (704)
..+|+-|+|++.. ....++.||..++...-.....
T Consensus 201 qdi~~L~G~vd~~k~~~~~~~dp~a~~~~G~l~~aNrGi~~f~Ei~K~----------~~~~l~~LL~~~qE~~v~~~~~ 270 (361)
T smart00763 201 QDISELTGKVDIRKLEIYSESDPRAFSYDGALNRANRGILEFVEMFKA----------DIKFLHPLLTATQEGNIKGTGG 270 (361)
T ss_pred ccHHHHhcccCHHHhcccCCCCCeEEeccCccccccCceEEEeehhcC----------CHHHHHHHhhhhhcceEecCCc
Confidence 0012222222222 2347788888887644322111
Q ss_pred ccccCccEEEEEEcCCCC-------CCcccccCCCccceeeeeCCC-CHHHHHHHHHHHhcC
Q 005285 307 RFSLRQAVIFICATNRPD-------ELDLEFVRPGRIDRRLYIGLP-DAKQRVQIFDVHSAG 360 (704)
Q Consensus 307 ~~~~~~~ViVIaaTN~p~-------~LD~aLlRpgRfd~~I~v~~P-d~~eR~~Il~~~l~~ 360 (704)
.....-..+||+++|..+ ...+||++ ||. .|.+|.| +..+-.+|.+..+..
T Consensus 271 ~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~d--R~~-~i~vpY~l~~~~E~~Iy~k~~~~ 329 (361)
T smart00763 271 FAMIPIDGLIIAHSNESEWQRFKSNKKNEALLD--RII-KVKVPYCLRVSEEAQIYEKLLRN 329 (361)
T ss_pred ccccccceEEEEeCCHHHHhhhhccccchhhhh--ceE-EEeCCCcCCHHHHHHHHHHHhcc
Confidence 001222358899999873 56789999 996 8889887 567778888877654
No 187
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.00 E-value=2.5e-09 Score=117.72 Aligned_cols=209 Identities=20% Similarity=0.195 Sum_probs=129.6
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccc
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEF 240 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~ 240 (704)
+.+...+.++||...+...+.+.++..-. .+-.|||.|.+||||.++||+|-... +.||+.+||..+
T Consensus 216 ~~~~~~~~~iIG~S~am~~ll~~i~~VA~----------Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAl 285 (550)
T COG3604 216 SEVVLEVGGIIGRSPAMRQLLKEIEVVAK----------SDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAAL 285 (550)
T ss_pred cchhcccccceecCHHHHHHHHHHHHHhc----------CCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeecccc
Confidence 34467899999998766555555554433 34679999999999999999997755 679999999998
Q ss_pred cchhhhhH--HHHHHHHHHHhhC--------CCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccc
Q 005285 241 TDSEKSGA--ARINEMFSIARRN--------APAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSL 310 (704)
Q Consensus 241 ~~~~~~g~--~~vr~lF~~Ak~~--------~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~ 310 (704)
.+....++ .-.+..|.-|-.. ...-||+|||..|.- .....||..++......-+.....
T Consensus 286 PesLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL----------~lQaKLLRvLQegEieRvG~~r~i 355 (550)
T COG3604 286 PESLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELPL----------ALQAKLLRVLQEGEIERVGGDRTI 355 (550)
T ss_pred chHHHHHHHhcccccccccchhccCcceeecCCCeEechhhccCCH----------HHHHHHHHHHhhcceeecCCCcee
Confidence 87643221 1122333322221 134799999988742 245567776665433222222233
Q ss_pred CccEEEEEEcCCCCCCcccccCCCccce-------eeeeCCCCHHHHHH---HH-HHHh----cCCCc---c-ccccHHH
Q 005285 311 RQAVIFICATNRPDELDLEFVRPGRIDR-------RLYIGLPDAKQRVQ---IF-DVHS----AGKQL---A-EDVNFEE 371 (704)
Q Consensus 311 ~~~ViVIaaTN~p~~LD~aLlRpgRfd~-------~I~v~~Pd~~eR~~---Il-~~~l----~~~~l---~-~dvdl~~ 371 (704)
.-.|.||+|||+ +|-.++.. |+|-. ++.+..|...+|.. +| +.++ ..... . +...++.
T Consensus 356 kVDVRiIAATNR--DL~~~V~~-G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~ 432 (550)
T COG3604 356 KVDVRVIAATNR--DLEEMVRD-GEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALEL 432 (550)
T ss_pred EEEEEEEeccch--hHHHHHHc-CcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHH
Confidence 456999999997 44444443 66621 56667788777743 12 1222 22222 1 1112455
Q ss_pred HHHhccCCCHHHHHHHHHHHHHHH
Q 005285 372 LVFRTVGFSGADIRNLVNESGIMS 395 (704)
Q Consensus 372 La~~t~G~sgadL~~Lv~eA~~~A 395 (704)
|.....--+-++|+|+++.|++.|
T Consensus 433 L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 433 LSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHcCCCCCcHHHHHHHHHHHHHHh
Confidence 555443335789999999999988
No 188
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.00 E-value=6.6e-11 Score=109.61 Aligned_cols=119 Identities=24% Similarity=0.331 Sum_probs=68.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCc-cccchhhhhHHHHH---HHHHHHhh-CCCeEEEEccchhhhccCCC
Q 005285 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFASGA-EFTDSEKSGAARIN---EMFSIARR-NAPAFVFVDEIDAIAGRHAR 280 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s-~~~~~~~~g~~~vr---~lF~~Ak~-~~P~ILfIDEiDal~~~~~~ 280 (704)
+|||.|+||+|||++|+++|+.+|..|..|.+. ++......|..... .-|...+. --..|+++|||.....
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNrapp---- 76 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRAPP---- 76 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS-H----
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccCCH----
Confidence 489999999999999999999999999988875 44332211110000 00000000 0024999999987753
Q ss_pred CChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCC-----CCcccccCCCcc
Q 005285 281 KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPD-----ELDLEFVRPGRI 336 (704)
Q Consensus 281 ~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~-----~LD~aLlRpgRf 336 (704)
.+.+.||+.|......-....+....+++||||-|..+ .|+.|++. ||
T Consensus 77 ------ktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 77 ------KTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp ------HHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred ------HHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 47889999998766554444566677899999999876 58888887 87
No 189
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.00 E-value=7.6e-09 Score=118.72 Aligned_cols=202 Identities=20% Similarity=0.227 Sum_probs=119.6
Q ss_pred cccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccccchhh
Q 005285 169 MYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEK 245 (704)
Q Consensus 169 ~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~~~~~ 245 (704)
++.+++|.....+.+.+.+..+- ..+..|||+|++||||+++|++|.... +.||+.++|..+.+...
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a----------~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVA----------ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 67899999876555555544432 235679999999999999999998764 57999999998864311
Q ss_pred hh------------H-HHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCc
Q 005285 246 SG------------A-ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQ 312 (704)
Q Consensus 246 ~g------------~-~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~ 312 (704)
.. + ......|+.| ....|||||||.|.. .....|+..++........+......
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L~~----------~~Q~~Ll~~l~~~~~~~~g~~~~~~~ 321 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGELPL----------ALQAKLLRVLQYGEIQRVGSDRSLRV 321 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhCCH----------HHHHHHHHHHhcCCEeeCCCCcceec
Confidence 10 0 0011134433 245899999999952 24566666665432111111122234
Q ss_pred cEEEEEEcCCCC-------CCcccccCCCccceeeeeCCCCHHHHHH----HHHHHhcC----C---Ccc-ccccHHHHH
Q 005285 313 AVIFICATNRPD-------ELDLEFVRPGRIDRRLYIGLPDAKQRVQ----IFDVHSAG----K---QLA-EDVNFEELV 373 (704)
Q Consensus 313 ~ViVIaaTN~p~-------~LD~aLlRpgRfd~~I~v~~Pd~~eR~~----Il~~~l~~----~---~l~-~dvdl~~La 373 (704)
++.+|++||..- .+.+.|.. |+. .+.+..|...+|.+ +++.++.. . ... ...-+..|.
T Consensus 322 ~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~ 398 (509)
T PRK05022 322 DVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALL 398 (509)
T ss_pred ceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHH
Confidence 589999998642 12222222 332 45677787777743 23333221 1 111 111245555
Q ss_pred HhccCCCHHHHHHHHHHHHHHHH
Q 005285 374 FRTVGFSGADIRNLVNESGIMSV 396 (704)
Q Consensus 374 ~~t~G~sgadL~~Lv~eA~~~A~ 396 (704)
...---+-++|+|+++.|+..+.
T Consensus 399 ~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 399 AYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred hCCCCCcHHHHHHHHHHHHHhcC
Confidence 54444467899999999888764
No 190
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.98 E-value=5.4e-10 Score=112.05 Aligned_cols=127 Identities=23% Similarity=0.337 Sum_probs=68.4
Q ss_pred cccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcC-------------------
Q 005285 169 MYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESG------------------- 229 (704)
Q Consensus 169 ~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g------------------- 229 (704)
+|+||+|++.+|..|.-... | ..++||+||||||||++|+++..-+.
T Consensus 1 Df~dI~GQe~aKrAL~iAAa-----------G---~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA-----------G---GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGL 66 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH-----------C---C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---
T ss_pred ChhhhcCcHHHHHHHHHHHc-----------C---CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccC
Confidence 58999999999987765433 2 35899999999999999999987431
Q ss_pred ---------CCEEEEeCccccch-hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCC
Q 005285 230 ---------LPFVFASGAEFTDS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGD 299 (704)
Q Consensus 230 ---------~~~v~is~s~~~~~-~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~ 299 (704)
.||....-+.-... .|.+....-. +.++.+ ..||||||+-.+- ..+++.|+.-|+..
T Consensus 67 ~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PG--eislAh-~GVLflDE~~ef~----------~~vld~Lr~ple~g 133 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPG--EISLAH-RGVLFLDELNEFD----------RSVLDALRQPLEDG 133 (206)
T ss_dssp S---EEEE---EEEE-TT--HHHHHEEGGGEEE---CGGGGT-TSEEEECETTTS-----------HHHHHHHHHHHHHS
T ss_pred CCCCceecCCCcccCCCCcCHHHHhCCCcCCCcC--HHHHhc-CCEEEechhhhcC----------HHHHHHHHHHHHCC
Confidence 12222111111010 1111000000 112233 3699999998772 45788888888654
Q ss_pred cccC--CccccccCccEEEEEEcCC
Q 005285 300 KERT--GIDRFSLRQAVIFICATNR 322 (704)
Q Consensus 300 ~~~~--~~~~~~~~~~ViVIaaTN~ 322 (704)
...- ......-..++++|+|+|.
T Consensus 134 ~v~i~R~~~~~~~Pa~f~lv~a~NP 158 (206)
T PF01078_consen 134 EVTISRAGGSVTYPARFLLVAAMNP 158 (206)
T ss_dssp BEEEEETTEEEEEB--EEEEEEE-S
T ss_pred eEEEEECCceEEEecccEEEEEecc
Confidence 3211 0111222345899999885
No 191
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=4.8e-09 Score=110.23 Aligned_cols=89 Identities=26% Similarity=0.387 Sum_probs=67.2
Q ss_pred eEEEEccchhhhccCC-C-CChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEc----CCCCCCcccccCCCccc
Q 005285 264 AFVFVDEIDAIAGRHA-R-KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT----NRPDELDLEFVRPGRID 337 (704)
Q Consensus 264 ~ILfIDEiDal~~~~~-~-~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT----N~p~~LD~aLlRpgRfd 337 (704)
.||||||||.++.+.. + .+-.++.+...||-...|...++... ....+.+++||+. ..|..|=|.|. |||.
T Consensus 252 GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG-~VkTdHILFIasGAFh~sKPSDLiPELQ--GRfP 328 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYG-PVKTDHILFIASGAFHVAKPSDLIPELQ--GRFP 328 (444)
T ss_pred CeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeecccc-ccccceEEEEecCceecCChhhcChhhc--CCCc
Confidence 5999999999987653 2 25566778888998888866544321 2234568999886 45777777775 5999
Q ss_pred eeeeeCCCCHHHHHHHHH
Q 005285 338 RRLYIGLPDAKQRVQIFD 355 (704)
Q Consensus 338 ~~I~v~~Pd~~eR~~Il~ 355 (704)
..+++...+.+.-..||.
T Consensus 329 IRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 329 IRVELDALTKEDFERILT 346 (444)
T ss_pred eEEEcccCCHHHHHHHHc
Confidence 999999999999888875
No 192
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.98 E-value=6e-09 Score=120.31 Aligned_cols=217 Identities=20% Similarity=0.220 Sum_probs=123.6
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccc
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEF 240 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~ 240 (704)
.....+|++++|.....+.+.+.+..+. .....|||+|++|||||++|++|.... +.||+.++|..+
T Consensus 189 ~~~~~~~~~liG~s~~~~~~~~~~~~~a----------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~ 258 (534)
T TIGR01817 189 RRRSGKEDGIIGKSPAMRQVVDQARVVA----------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAAL 258 (534)
T ss_pred ccccCccCceEECCHHHHHHHHHHHHHh----------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCC
Confidence 3455789999999876555444444332 234579999999999999999998764 579999999987
Q ss_pred cchhhhhH----H---------HHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccc
Q 005285 241 TDSEKSGA----A---------RINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDR 307 (704)
Q Consensus 241 ~~~~~~g~----~---------~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~ 307 (704)
.+...... . .....|+.| ...+|||||||.+.. .....|+..++..........
T Consensus 259 ~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L~~----------~~Q~~Ll~~l~~~~~~~~~~~ 325 (534)
T TIGR01817 259 SETLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEISP----------AFQAKLLRVLQEGEFERVGGN 325 (534)
T ss_pred CHHHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhCCH----------HHHHHHHHHHhcCcEEECCCC
Confidence 54321100 0 000112222 246899999999942 245566666654221110000
Q ss_pred cccCccEEEEEEcCCCC-------CCcccccCCCccceeeeeCCCCHHHH----HHHHHHHhcC----C--Ccc-ccccH
Q 005285 308 FSLRQAVIFICATNRPD-------ELDLEFVRPGRIDRRLYIGLPDAKQR----VQIFDVHSAG----K--QLA-EDVNF 369 (704)
Q Consensus 308 ~~~~~~ViVIaaTN~p~-------~LD~aLlRpgRfd~~I~v~~Pd~~eR----~~Il~~~l~~----~--~l~-~dvdl 369 (704)
.....++.+|++|+..- .+.+.|.. |+. .+.+..|...+| ..|++.++.. . +.. .+..+
T Consensus 326 ~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~-~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~ 402 (534)
T TIGR01817 326 RTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RIN-VVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAI 402 (534)
T ss_pred ceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--Hhc-CCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 11223478899887531 12222222 332 345555655544 3344444331 1 111 11224
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHH
Q 005285 370 EELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIV 409 (704)
Q Consensus 370 ~~La~~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~ 409 (704)
..|....---+-++|+++++.|...+ ....|+.+|+.
T Consensus 403 ~~L~~~~WPGNvrEL~~v~~~a~~~~---~~~~I~~~~l~ 439 (534)
T TIGR01817 403 RVLMSCKWPGNVRELENCLERTATLS---RSGTITRSDFS 439 (534)
T ss_pred HHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCc
Confidence 55555543446788888888887654 23567877753
No 193
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.97 E-value=8.8e-09 Score=118.37 Aligned_cols=213 Identities=22% Similarity=0.231 Sum_probs=117.8
Q ss_pred CCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccccc
Q 005285 166 TKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTD 242 (704)
Q Consensus 166 ~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~~ 242 (704)
...+|++++|.....+.+.+.+..+ +.....|||+|++||||+++|+++.... +.||+.++|+.+.+
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~----------A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~ 268 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKL----------AMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD 268 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHH----------hCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH
Confidence 4578999999875433333222211 1124459999999999999999986543 46999999998764
Q ss_pred hhhhhH-------------HHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccc
Q 005285 243 SEKSGA-------------ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFS 309 (704)
Q Consensus 243 ~~~~g~-------------~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~ 309 (704)
...... .....+|+.|. ...|||||||.+.. .....|+..+.............
T Consensus 269 ~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L~~----------~~Q~~Ll~~l~~~~~~~~g~~~~ 335 (520)
T PRK10820 269 DVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEMSP----------RMQAKLLRFLNDGTFRRVGEDHE 335 (520)
T ss_pred HHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhCCH----------HHHHHHHHHHhcCCcccCCCCcc
Confidence 311100 00112344442 45799999999942 23455666654422111111112
Q ss_pred cCccEEEEEEcCCCC--C-----CcccccCCCccceeeeeCCCCHHHHHH-H---HHHHhc----CC-----CccccccH
Q 005285 310 LRQAVIFICATNRPD--E-----LDLEFVRPGRIDRRLYIGLPDAKQRVQ-I---FDVHSA----GK-----QLAEDVNF 369 (704)
Q Consensus 310 ~~~~ViVIaaTN~p~--~-----LD~aLlRpgRfd~~I~v~~Pd~~eR~~-I---l~~~l~----~~-----~l~~dvdl 369 (704)
...++.||+||+.+- . +.+.|.. |+. .+.+..|...+|.+ | ++.++. .. .+.++ -+
T Consensus 336 ~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~-a~ 411 (520)
T PRK10820 336 VHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAAD-LN 411 (520)
T ss_pred eeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHH-HH
Confidence 234578999887641 1 2233333 543 46677777777652 2 222222 11 12211 23
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHH
Q 005285 370 EELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDI 408 (704)
Q Consensus 370 ~~La~~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl 408 (704)
..|....---+-++|+|++..|...+ ....|+.+|+
T Consensus 412 ~~L~~y~WPGNvreL~nvl~~a~~~~---~~~~i~~~~~ 447 (520)
T PRK10820 412 TVLTRYGWPGNVRQLKNAIYRALTQL---EGYELRPQDI 447 (520)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 44444333335577778787776654 2345666664
No 194
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.96 E-value=6.3e-09 Score=112.85 Aligned_cols=177 Identities=23% Similarity=0.248 Sum_probs=101.2
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccccchhhhhH-------------HHHHHHHHHHhhCCCeEE
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKSGA-------------ARINEMFSIARRNAPAFV 266 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~~~~~~g~-------------~~vr~lF~~Ak~~~P~IL 266 (704)
....|||+|++||||+++|++|.... +.||+.++|..+.+...... .....+|+.| ....|
T Consensus 21 ~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a---~gGtL 97 (329)
T TIGR02974 21 LDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERA---DGGTL 97 (329)
T ss_pred CCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhC---CCCEE
Confidence 34679999999999999999997654 57999999997654311100 0011224443 24689
Q ss_pred EEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCC-------CCCcccccCCCcccee
Q 005285 267 FVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRP-------DELDLEFVRPGRIDRR 339 (704)
Q Consensus 267 fIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p-------~~LD~aLlRpgRfd~~ 339 (704)
||||||.|.. .....|+..++...............++.+|++||.. ..+.+.|.. ||. .
T Consensus 98 ~Ldei~~L~~----------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~-~ 164 (329)
T TIGR02974 98 FLDELATASL----------LVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD--RLA-F 164 (329)
T ss_pred EeCChHhCCH----------HHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHH--Hhc-c
Confidence 9999999942 2455666666543211111111223458899999763 123344444 553 3
Q ss_pred eeeCCCCHHHHHH----HHHHHhc------CCCc---cccccHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 005285 340 LYIGLPDAKQRVQ----IFDVHSA------GKQL---AEDVNFEELVFRTVGFSGADIRNLVNESGIMS 395 (704)
Q Consensus 340 I~v~~Pd~~eR~~----Il~~~l~------~~~l---~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A 395 (704)
+.+..|...+|.+ +++.++. +... -.+..+..|....---+-++|+|+++.+...+
T Consensus 165 ~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 165 DVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred hhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 5677777766643 3333322 1111 11122445555443335677888887777654
No 195
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.96 E-value=7.3e-09 Score=117.42 Aligned_cols=217 Identities=21% Similarity=0.234 Sum_probs=127.7
Q ss_pred ccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCC----------CEEEEeC
Q 005285 168 SMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGL----------PFVFASG 237 (704)
Q Consensus 168 ~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~----------~~v~is~ 237 (704)
.+|.++.|+..+++.+. + .+.....++|+||||+|||++++.+++.+.- .+.++.+
T Consensus 188 ~d~~~v~Gq~~~~~al~----l----------aa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLE----I----------TAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred cCeEEEECcHHHHhhhh----e----------eccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 36777777665443321 1 1223468999999999999999999875421 1111111
Q ss_pred c----------cccch---------hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcC
Q 005285 238 A----------EFTDS---------EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDG 298 (704)
Q Consensus 238 s----------~~~~~---------~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~ 298 (704)
. -|... .|.+...-...+..|. ..+|||||++.+. ..++..|+..|+.
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~---gGvLfLDEi~e~~----------~~~~~~L~~~LE~ 320 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAH---NGVLFLDELPEFE----------RRTLDALREPIES 320 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhcc---CCEEecCCchhCC----------HHHHHHHHHHHHc
Confidence 1 01110 1111111112333332 3599999998873 2466777777754
Q ss_pred Ccc---cCCccccccCccEEEEEEcCCCC---------------------CCcccccCCCccceeeeeCCCCHHH-----
Q 005285 299 DKE---RTGIDRFSLRQAVIFICATNRPD---------------------ELDLEFVRPGRIDRRLYIGLPDAKQ----- 349 (704)
Q Consensus 299 ~~~---~~~~~~~~~~~~ViVIaaTN~p~---------------------~LD~aLlRpgRfd~~I~v~~Pd~~e----- 349 (704)
... ..+ .......++.+|+|+|... .|..+++. |||.++.++.|+.++
T Consensus 321 g~v~I~r~g-~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~l~~~~ 397 (506)
T PRK09862 321 GQIHLSRTR-AKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGILSKTV 397 (506)
T ss_pred CcEEEecCC-cceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHHHhccc
Confidence 332 111 1122345689999999742 36678888 999999999885321
Q ss_pred -----HHHHHHHHh--------c----CCCccc---------cccHH---HHHHhccCCCHHHHHHHHHHHHHHHHHhCC
Q 005285 350 -----RVQIFDVHS--------A----GKQLAE---------DVNFE---ELVFRTVGFSGADIRNLVNESGIMSVRKGH 400 (704)
Q Consensus 350 -----R~~Il~~~l--------~----~~~l~~---------dvdl~---~La~~t~G~sgadL~~Lv~eA~~~A~r~~~ 400 (704)
...|-+... + +..+.. +.... .-+....|+|.+....+++-|...|.-+++
T Consensus 398 ~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL~g~ 477 (506)
T PRK09862 398 VPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADIDQS 477 (506)
T ss_pred CCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCC
Confidence 111211100 0 000100 00011 112245688999999999999999999999
Q ss_pred CcccHHHHHHHHHH
Q 005285 401 SKIQQQDIVDVLDK 414 (704)
Q Consensus 401 ~~It~~dl~~Al~~ 414 (704)
+.|+.+|+.+|+.-
T Consensus 478 ~~V~~~hv~eAl~y 491 (506)
T PRK09862 478 DIITRQHLQEAVSY 491 (506)
T ss_pred CCCCHHHHHHHHHh
Confidence 99999999999863
No 196
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.96 E-value=1.1e-08 Score=120.58 Aligned_cols=215 Identities=18% Similarity=0.220 Sum_probs=121.1
Q ss_pred CccccceecCcccHHHHHH-HHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccccc
Q 005285 167 KSMYKEVVLGGDVWDLLDE-LMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTD 242 (704)
Q Consensus 167 ~~~f~dVvG~~~~k~~L~e-lv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~~ 242 (704)
..+|++++|.....+.+.+ +.... +....|||+|++||||+++|+++.... +.||+.++|..+..
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a-----------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAA-----------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHh-----------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 4578899888754433333 22222 224569999999999999999998764 57999999998764
Q ss_pred hhhh----h----HHH--HHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCc
Q 005285 243 SEKS----G----AAR--INEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQ 312 (704)
Q Consensus 243 ~~~~----g----~~~--vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~ 312 (704)
.... | ... ....|+.| ....||||||+.+.. .....|+..++..............-
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l~~----------~~Q~~Ll~~l~~~~~~~~~~~~~~~~ 456 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYLSP----------ELQSALLQVLKTGVITRLDSRRLIPV 456 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhCCH----------HHHHHHHHHHhcCcEEeCCCCceEEe
Confidence 2110 0 000 00122222 346899999999852 24456666665432111100011122
Q ss_pred cEEEEEEcCCCCCCcccccCCCccc-------eeeeeCCCCHHHHHH----HHHHHhcCC------Cc-cccccHHHHHH
Q 005285 313 AVIFICATNRPDELDLEFVRPGRID-------RRLYIGLPDAKQRVQ----IFDVHSAGK------QL-AEDVNFEELVF 374 (704)
Q Consensus 313 ~ViVIaaTN~p~~LD~aLlRpgRfd-------~~I~v~~Pd~~eR~~----Il~~~l~~~------~l-~~dvdl~~La~ 374 (704)
++.+|+|||..- . .+...|+|. ..+.+..|...+|.+ +++.++... .. -.+..+..|..
T Consensus 457 ~~riI~~t~~~l--~-~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~ 533 (638)
T PRK11388 457 DVRVIATTTADL--A-MLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVS 533 (638)
T ss_pred eEEEEEeccCCH--H-HHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHc
Confidence 478999988632 1 111223331 156777788777742 333333211 11 11223455555
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHH
Q 005285 375 RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDV 411 (704)
Q Consensus 375 ~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~A 411 (704)
..---+-++|+|+++.|...+ ....|+.+|+...
T Consensus 534 y~WPGNvreL~~~l~~~~~~~---~~~~i~~~~lp~~ 567 (638)
T PRK11388 534 YRWPGNDFELRSVIENLALSS---DNGRIRLSDLPEH 567 (638)
T ss_pred CCCCChHHHHHHHHHHHHHhC---CCCeecHHHCchh
Confidence 553346788888888877654 2346777776433
No 197
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.95 E-value=4.5e-09 Score=115.09 Aligned_cols=206 Identities=22% Similarity=0.267 Sum_probs=119.5
Q ss_pred CCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHH----cCCCEEEEeCccc
Q 005285 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKE----SGLPFVFASGAEF 240 (704)
Q Consensus 165 ~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e----~g~~~v~is~s~~ 240 (704)
-....|++++|....-+.+.+-+.. |. +....||+.|++||||+++|++|... .+.||+.+||+.+
T Consensus 72 ~~~~~~~~LIG~~~~~~~~~eqik~------~a----p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~ 141 (403)
T COG1221 72 LKSEALDDLIGESPSLQELREQIKA------YA----PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAY 141 (403)
T ss_pred ccchhhhhhhccCHHHHHHHHHHHh------hC----CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHh
Confidence 3456789999987533333332222 22 23456999999999999999999542 4679999999998
Q ss_pred cchhhhhH-------------HHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccc
Q 005285 241 TDSEKSGA-------------ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDR 307 (704)
Q Consensus 241 ~~~~~~g~-------------~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~ 307 (704)
.+...... ..-..+|++|. ..+||+|||..+... ....|+..|+...-..-++.
T Consensus 142 ~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~---GGtLfLDEI~~LP~~----------~Q~kLl~~le~g~~~rvG~~ 208 (403)
T COG1221 142 SENLQEAELFGHEKGAFTGAQGGKAGLFEQAN---GGTLFLDEIHRLPPE----------GQEKLLRVLEEGEYRRVGGS 208 (403)
T ss_pred CcCHHHHHHhccccceeecccCCcCchheecC---CCEEehhhhhhCCHh----------HHHHHHHHHHcCceEecCCC
Confidence 87632211 11224454443 348999999998532 45667777776433322122
Q ss_pred cccCccEEEEEEcCCCCCCcccccC-CC---ccceeeeeCCCCHHHHHH----HHHHHh----cCCCcccccc----HHH
Q 005285 308 FSLRQAVIFICATNRPDELDLEFVR-PG---RIDRRLYIGLPDAKQRVQ----IFDVHS----AGKQLAEDVN----FEE 371 (704)
Q Consensus 308 ~~~~~~ViVIaaTN~p~~LD~aLlR-pg---Rfd~~I~v~~Pd~~eR~~----Il~~~l----~~~~l~~dvd----l~~ 371 (704)
-.....|.+|+|||. .++.+++. .. |. ..+.+..|+..+|.. +++.++ +........+ +..
T Consensus 209 ~~~~~dVRli~AT~~--~l~~~~~~g~dl~~rl-~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~ 285 (403)
T COG1221 209 QPRPVDVRLICATTE--DLEEAVLAGADLTRRL-NILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRA 285 (403)
T ss_pred CCcCCCceeeecccc--CHHHHHHhhcchhhhh-cCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHH
Confidence 234456999999974 33333322 00 22 134556666666632 333333 3333222222 233
Q ss_pred HHHhccCCCHHHHHHHHHHHHHHHH
Q 005285 372 LVFRTVGFSGADIRNLVNESGIMSV 396 (704)
Q Consensus 372 La~~t~G~sgadL~~Lv~eA~~~A~ 396 (704)
|-...---+-++|.|++..++..+.
T Consensus 286 L~~y~~pGNirELkN~Ve~~~~~~~ 310 (403)
T COG1221 286 LLAYDWPGNIRELKNLVERAVAQAS 310 (403)
T ss_pred HHhCCCCCcHHHHHHHHHHHHHHhc
Confidence 3333222256789999998887764
No 198
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.94 E-value=2.6e-08 Score=103.14 Aligned_cols=98 Identities=15% Similarity=0.206 Sum_probs=69.9
Q ss_pred EEEEEcCC------------CCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccc-cHHHHHHhccCCCH
Q 005285 315 IFICATNR------------PDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDV-NFEELVFRTVGFSG 381 (704)
Q Consensus 315 iVIaaTN~------------p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dv-dl~~La~~t~G~sg 381 (704)
++|.+||+ |.-+|-.|+. |+ ..|...+++.++..+||+..+......-+. .++.|......-|-
T Consensus 319 iiimaTNrgit~iRGTn~~SphGiP~D~lD--R~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsL 395 (454)
T KOG2680|consen 319 IIIMATNRGITRIRGTNYRSPHGIPIDLLD--RM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSL 395 (454)
T ss_pred EEEEEcCCceEEeecCCCCCCCCCcHHHhh--hh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhH
Confidence 56666776 4456666666 65 477888899999999999988755443222 24445544444455
Q ss_pred HHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Q 005285 382 ADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQ 415 (704)
Q Consensus 382 adL~~Lv~eA~~~A~r~~~~~It~~dl~~Al~~~ 415 (704)
+---+|+..|.+.|.++....+..+|+..+..--
T Consensus 396 RYai~Lit~a~~~~~krk~~~v~~~di~r~y~LF 429 (454)
T KOG2680|consen 396 RYAIHLITAASLVCLKRKGKVVEVDDIERVYRLF 429 (454)
T ss_pred HHHHHHHHHHHHHHHHhcCceeehhHHHHHHHHH
Confidence 5566889999999999988899999998887643
No 199
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.93 E-value=1.3e-08 Score=120.84 Aligned_cols=206 Identities=18% Similarity=0.205 Sum_probs=118.9
Q ss_pred CCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccccc
Q 005285 166 TKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTD 242 (704)
Q Consensus 166 ~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~~ 242 (704)
.+.+|++++|.....+.+.+-+..+.. ....|||+|++|||||++|++|...+ +.||+.++|..+..
T Consensus 371 ~n~~~~~liG~S~~~~~~~~~~~~~a~----------~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~ 440 (686)
T PRK15429 371 VDSEFGEIIGRSEAMYSVLKQVEMVAQ----------SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA 440 (686)
T ss_pred ccccccceeecCHHHHHHHHHHHHHhC----------CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh
Confidence 346799999998766655555444322 24579999999999999999997754 67999999998653
Q ss_pred hh------hh------h-HHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccc
Q 005285 243 SE------KS------G-AARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFS 309 (704)
Q Consensus 243 ~~------~~------g-~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~ 309 (704)
.. +. + .......|+.| ...+|||||||.+.. .....|+..++............
T Consensus 441 ~~~~~~lfg~~~~~~~g~~~~~~g~le~a---~~GtL~Ldei~~L~~----------~~Q~~L~~~l~~~~~~~~g~~~~ 507 (686)
T PRK15429 441 GLLESDLFGHERGAFTGASAQRIGRFELA---DKSSLFLDEVGDMPL----------ELQPKLLRVLQEQEFERLGSNKI 507 (686)
T ss_pred hHhhhhhcCcccccccccccchhhHHHhc---CCCeEEEechhhCCH----------HHHHHHHHHHHhCCEEeCCCCCc
Confidence 21 10 0 01111234433 246899999999842 24566666665432111111112
Q ss_pred cCccEEEEEEcCCCC--CCcccccCCC---ccceeeeeCCCCHHHHHH----HHHHHhcC------CCc--cccccHHHH
Q 005285 310 LRQAVIFICATNRPD--ELDLEFVRPG---RIDRRLYIGLPDAKQRVQ----IFDVHSAG------KQL--AEDVNFEEL 372 (704)
Q Consensus 310 ~~~~ViVIaaTN~p~--~LD~aLlRpg---Rfd~~I~v~~Pd~~eR~~----Il~~~l~~------~~l--~~dvdl~~L 372 (704)
...++.+|++|+..- .+....+++. |+. .+.+..|...+|.+ +++.++.. ... -....+..|
T Consensus 508 ~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L 586 (686)
T PRK15429 508 IQTDVRLIAATNRDLKKMVADREFRSDLYYRLN-VFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTL 586 (686)
T ss_pred ccceEEEEEeCCCCHHHHHHcCcccHHHHhccC-eeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHH
Confidence 234588999997642 1222222211 231 56678888777754 33333221 111 111224455
Q ss_pred HHhccCCCHHHHHHHHHHHHHHH
Q 005285 373 VFRTVGFSGADIRNLVNESGIMS 395 (704)
Q Consensus 373 a~~t~G~sgadL~~Lv~eA~~~A 395 (704)
....---+-++|+++++.|.+.+
T Consensus 587 ~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 587 SNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred HhCCCCCcHHHHHHHHHHHHHhC
Confidence 54443345678888888777654
No 200
>PRK08116 hypothetical protein; Validated
Probab=98.92 E-value=3.7e-09 Score=111.39 Aligned_cols=155 Identities=21% Similarity=0.226 Sum_probs=88.2
Q ss_pred CccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccccch
Q 005285 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDS 243 (704)
Q Consensus 167 ~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~~~ 243 (704)
..+|++....++....+.....+.++.. ... ..+.|++|+|+||||||+||.|+|+++ +.++++++..++...
T Consensus 81 ~~tFdnf~~~~~~~~a~~~a~~y~~~~~---~~~-~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~ 156 (268)
T PRK08116 81 NSTFENFLFDKGSEKAYKIARKYVKKFE---EMK-KENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNR 156 (268)
T ss_pred hcchhcccCChHHHHHHHHHHHHHHHHH---hhc-cCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 3466666534444444444444544321 111 234689999999999999999999975 889999998887654
Q ss_pred hhhh-----HHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEE
Q 005285 244 EKSG-----AARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFIC 318 (704)
Q Consensus 244 ~~~g-----~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIa 318 (704)
.... ......+++... ...+|+|||++... ..+. ....|...++..... +..+|.
T Consensus 157 i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e~-----~t~~---~~~~l~~iin~r~~~----------~~~~Ii 216 (268)
T PRK08116 157 IKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAER-----DTEW---AREKVYNIIDSRYRK----------GLPTIV 216 (268)
T ss_pred HHHHHhccccccHHHHHHHhc--CCCEEEEecccCCC-----CCHH---HHHHHHHHHHHHHHC----------CCCEEE
Confidence 3211 011223333332 33599999996431 1222 233444444432211 135788
Q ss_pred EcCCC-CC----CcccccCCCcc---ceeeeeCCCCH
Q 005285 319 ATNRP-DE----LDLEFVRPGRI---DRRLYIGLPDA 347 (704)
Q Consensus 319 aTN~p-~~----LD~aLlRpgRf---d~~I~v~~Pd~ 347 (704)
|||.+ +. ++..+.+ |+ ...|.+.-||.
T Consensus 217 TsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 217 TTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred ECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 88875 23 4555655 64 23466666664
No 201
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.91 E-value=1.6e-08 Score=109.60 Aligned_cols=200 Identities=20% Similarity=0.211 Sum_probs=112.1
Q ss_pred ccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccccchhhh
Q 005285 170 YKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKS 246 (704)
Q Consensus 170 f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~~~~~~ 246 (704)
|++++|.....+.+.+.+..+- +.+..|||+|++||||+++|+++.... +.||+.++|..+.+....
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~ 74 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLA----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLD 74 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHH
Confidence 6778888765444444433321 234679999999999999999997654 579999999987532110
Q ss_pred ----hH---------HHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCcc
Q 005285 247 ----GA---------ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQA 313 (704)
Q Consensus 247 ----g~---------~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ 313 (704)
|. ......|..| ....|||||+|.+.. .....|+..++...............+
T Consensus 75 ~~lfg~~~~~~~g~~~~~~g~l~~a---~gGtL~l~~i~~L~~----------~~Q~~L~~~l~~~~~~~~g~~~~~~~~ 141 (326)
T PRK11608 75 SELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPM----------LVQEKLLRVIEYGELERVGGSQPLQVN 141 (326)
T ss_pred HHHccccccccCCcccccCCchhcc---CCCeEEeCChhhCCH----------HHHHHHHHHHhcCcEEeCCCCceeecc
Confidence 00 0011223333 245899999999952 245566666654321110001112235
Q ss_pred EEEEEEcCCC-------CCCcccccCCCccceeeeeCCCCHHHHHH----HHHHHhc----CCCc-----cccccHHHHH
Q 005285 314 VIFICATNRP-------DELDLEFVRPGRIDRRLYIGLPDAKQRVQ----IFDVHSA----GKQL-----AEDVNFEELV 373 (704)
Q Consensus 314 ViVIaaTN~p-------~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~----Il~~~l~----~~~l-----~~dvdl~~La 373 (704)
+.||++|+.. ..+.+.|.. ||. .+.+..|...+|.+ ++..++. .... -....+..|.
T Consensus 142 ~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~ 218 (326)
T PRK11608 142 VRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLL 218 (326)
T ss_pred EEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence 7889888763 234445554 663 35566677666633 3443332 1111 0111234444
Q ss_pred HhccCCCHHHHHHHHHHHHHHH
Q 005285 374 FRTVGFSGADIRNLVNESGIMS 395 (704)
Q Consensus 374 ~~t~G~sgadL~~Lv~eA~~~A 395 (704)
...---+-++|+++++.|...+
T Consensus 219 ~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 219 NYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred hCCCCcHHHHHHHHHHHHHHhc
Confidence 4433335677888888776543
No 202
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.90 E-value=6.6e-09 Score=101.97 Aligned_cols=118 Identities=25% Similarity=0.334 Sum_probs=71.8
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccccchhhh----h--------H-HHHHHHHHHHhhCCCeEE
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKS----G--------A-ARINEMFSIARRNAPAFV 266 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~~~~~~----g--------~-~~vr~lF~~Ak~~~P~IL 266 (704)
.+..|||+|++||||+++|++|-+.. +.||+.++|+.+...... | . .....+|++|.. .+|
T Consensus 21 ~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~---GtL 97 (168)
T PF00158_consen 21 SDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQANG---GTL 97 (168)
T ss_dssp STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTT---SEE
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeeccc---eEE
Confidence 35789999999999999999998764 579999999987543110 0 0 112256666644 489
Q ss_pred EEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCcc
Q 005285 267 FVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRI 336 (704)
Q Consensus 267 fIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRf 336 (704)
|||||+.|.. .....|+..|+........+.....-++.||++|+. .|...+. .|+|
T Consensus 98 ~Ld~I~~L~~----------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~--~l~~~v~-~g~f 154 (168)
T PF00158_consen 98 FLDEIEDLPP----------ELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK--DLEELVE-QGRF 154 (168)
T ss_dssp EEETGGGS-H----------HHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS---HHHHHH-TTSS
T ss_pred eecchhhhHH----------HHHHHHHHHHhhchhccccccccccccceEEeecCc--CHHHHHH-cCCC
Confidence 9999999953 355667777664322111111223346899999985 3333333 3566
No 203
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.89 E-value=2e-08 Score=111.93 Aligned_cols=213 Identities=24% Similarity=0.298 Sum_probs=130.7
Q ss_pred CccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccccch
Q 005285 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDS 243 (704)
Q Consensus 167 ~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~~~ 243 (704)
...+.+++|...+-+.+.+.+.-+... .-.||++|++||||.++||+|-... +-||+.+||..+.+.
T Consensus 137 ~~~~~~liG~S~am~~l~~~i~kvA~s----------~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 137 KSLGGELVGESPAMQQLRRLIAKVAPS----------DASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred ccccCCceecCHHHHHHHHHHHHHhCC----------CCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 456889999988777777776655443 4579999999999999999997654 569999999997754
Q ss_pred hhhh------------H-HHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccc
Q 005285 244 EKSG------------A-ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSL 310 (704)
Q Consensus 244 ~~~g------------~-~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~ 310 (704)
.... + .+-...|+.|. ...||||||..+. ......||..+.......-+.....
T Consensus 207 l~ESELFGhekGAFTGA~~~r~G~fE~A~---GGTLfLDEI~~mp----------l~~Q~kLLRvLqe~~~~rvG~~~~i 273 (464)
T COG2204 207 LLESELFGHEKGAFTGAITRRIGRFEQAN---GGTLFLDEIGEMP----------LELQVKLLRVLQEREFERVGGNKPI 273 (464)
T ss_pred HHHHHhhcccccCcCCcccccCcceeEcC---CceEEeeccccCC----------HHHHHHHHHHHHcCeeEecCCCccc
Confidence 2111 1 11123455443 3589999999884 2356778887775443332223344
Q ss_pred CccEEEEEEcCCCCCCcccccCCCccc-------eeeeeCCCCHHHHHH----HHHHHhc----CCCc-cccccHHHHHH
Q 005285 311 RQAVIFICATNRPDELDLEFVRPGRID-------RRLYIGLPDAKQRVQ----IFDVHSA----GKQL-AEDVNFEELVF 374 (704)
Q Consensus 311 ~~~ViVIaaTN~p~~LD~aLlRpgRfd-------~~I~v~~Pd~~eR~~----Il~~~l~----~~~l-~~dvdl~~La~ 374 (704)
+-+|.||+|||+ .|...+- .|||- -++.+..|...+|.+ +++++++ .... ...++-..+..
T Consensus 274 ~vdvRiIaaT~~--dL~~~v~-~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~ 350 (464)
T COG2204 274 KVDVRIIAATNR--DLEEEVA-AGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAA 350 (464)
T ss_pred ceeeEEEeecCc--CHHHHHH-cCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHH
Confidence 556999999996 2322222 24441 277888888887754 3333332 1111 12233333333
Q ss_pred h-ccCC--CHHHHHHHHHHHHHHHHHhCCCcccHHHH
Q 005285 375 R-TVGF--SGADIRNLVNESGIMSVRKGHSKIQQQDI 408 (704)
Q Consensus 375 ~-t~G~--sgadL~~Lv~eA~~~A~r~~~~~It~~dl 408 (704)
. +..+ +-++|+|++..+.+.+ ....|+.+++
T Consensus 351 L~~y~WPGNVREL~N~ver~~il~---~~~~i~~~~l 384 (464)
T COG2204 351 LLAYDWPGNVRELENVVERAVILS---EGPEIEVEDL 384 (464)
T ss_pred HHhCCCChHHHHHHHHHHHHHhcC---Cccccchhhc
Confidence 2 2223 3466777777766665 3344665554
No 204
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=6e-09 Score=112.47 Aligned_cols=98 Identities=32% Similarity=0.532 Sum_probs=73.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccchhhhh---HHHHHHHHHHHh----hCCCeEEEEccchhhhcc
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSG---AARINEMFSIAR----RNAPAFVFVDEIDAIAGR 277 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~~~~g---~~~vr~lF~~Ak----~~~P~ILfIDEiDal~~~ 277 (704)
.+|||.||+|+|||+||+.+|+-+++||..++|..+......| +..+..+...|. +.+..|+||||+|.|+..
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 4799999999999999999999999999999999998763222 444666655543 223479999999999744
Q ss_pred CCC----CChhHHHHHHHHHHHhcCCccc
Q 005285 278 HAR----KDPRRRATFEALIAQLDGDKER 302 (704)
Q Consensus 278 ~~~----~~~e~~~~ln~LL~~ld~~~~~ 302 (704)
..+ .+-..+.+...||..++|...+
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEGtvVn 335 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEGTVVN 335 (564)
T ss_pred CccccccccccchhHHHHHHHHhcccEEc
Confidence 322 2233456778899999886443
No 205
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.85 E-value=2.9e-08 Score=104.09 Aligned_cols=191 Identities=19% Similarity=0.194 Sum_probs=124.4
Q ss_pred ccCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCE------EEEe
Q 005285 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPF------VFAS 236 (704)
Q Consensus 163 ~~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~------v~is 236 (704)
+++++.+..||++++++...+.++.+.-+ .| +.|+|||||||||....+.|..+-.|. ..++
T Consensus 33 ekyrP~~l~dv~~~~ei~st~~~~~~~~~-----------lP-h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~leln 100 (360)
T KOG0990|consen 33 EKYRPPFLGIVIKQEPIWSTENRYSGMPG-----------LP-HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELN 100 (360)
T ss_pred cCCCCchhhhHhcCCchhhHHHHhccCCC-----------CC-cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhh
Confidence 57788899999999998887777633322 23 899999999999999999999876641 1112
Q ss_pred CccccchhhhhHHH-HHHHHHHHhh-------CCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccc
Q 005285 237 GAEFTDSEKSGAAR-INEMFSIARR-------NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRF 308 (704)
Q Consensus 237 ~s~~~~~~~~g~~~-vr~lF~~Ak~-------~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~ 308 (704)
.++-. +-+.-+ --..|..++. ..+..+++||.|++.. ...|+|-..+..+..+
T Consensus 101 aSd~r---gid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~----------~AQnALRRviek~t~n------ 161 (360)
T KOG0990|consen 101 ASDDR---GIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTR----------DAQNALRRVIEKYTAN------ 161 (360)
T ss_pred ccCcc---CCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhH----------HHHHHHHHHHHHhccc------
Confidence 22111 111111 2244555553 2577999999999952 3556666666554433
Q ss_pred ccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcccccc-HHHHHHhccCCCHHHHHHH
Q 005285 309 SLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVN-FEELVFRTVGFSGADIRNL 387 (704)
Q Consensus 309 ~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvd-l~~La~~t~G~sgadL~~L 387 (704)
+.++..+|.+..+-|+++. ||.+ +.+.+-+...-...+..++...+.....+ ...+++. +-.|++..
T Consensus 162 -----~rF~ii~n~~~ki~pa~qs--Rctr-frf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~----s~gDmr~a 229 (360)
T KOG0990|consen 162 -----TRFATISNPPQKIHPAQQS--RCTR-FRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRL----SVGDMRVA 229 (360)
T ss_pred -----eEEEEeccChhhcCchhhc--cccc-CCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHH----hHHHHHHH
Confidence 4556678999999999998 8854 56777777777777777776555433222 2234433 44577776
Q ss_pred HHHHHHHHH
Q 005285 388 VNESGIMSV 396 (704)
Q Consensus 388 v~eA~~~A~ 396 (704)
+|.-...+.
T Consensus 230 ~n~Lqs~~~ 238 (360)
T KOG0990|consen 230 LNYLQSILK 238 (360)
T ss_pred HHHHHHHHH
Confidence 665544443
No 206
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.84 E-value=2.8e-08 Score=107.85 Aligned_cols=132 Identities=17% Similarity=0.300 Sum_probs=96.5
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCCC-------------------------EEEEeCcccc---------------
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLP-------------------------FVFASGAEFT--------------- 241 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~g~~-------------------------~v~is~s~~~--------------- 241 (704)
+.|.++||+||+|+||+++|+++|+.+.+. +..+......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 688999999999999999999999876431 2222111000
Q ss_pred -ch--------hhhhHHHHHHHHHHHhh----CCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccc
Q 005285 242 -DS--------EKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRF 308 (704)
Q Consensus 242 -~~--------~~~g~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~ 308 (704)
.. ...+...+|.+.+.+.. ....|++||++|.+. ....|.||+.|+.-.
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~----------~~AaNaLLKtLEEPp-------- 160 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN----------VAAANALLKTLEEPP-------- 160 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC----------HHHHHHHHHHhcCCC--------
Confidence 00 01123456666555432 234699999999994 347899999998743
Q ss_pred ccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHH
Q 005285 309 SLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVH 357 (704)
Q Consensus 309 ~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~ 357 (704)
.++++|.+|++++.|.|.+++ |+ ..+.|++|+.++..+.|...
T Consensus 161 ---~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 161 ---PGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred ---cCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 347899999999999999999 99 78999999999999888754
No 207
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.83 E-value=4.8e-08 Score=106.32 Aligned_cols=167 Identities=23% Similarity=0.300 Sum_probs=106.3
Q ss_pred CccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeC---------
Q 005285 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASG--------- 237 (704)
Q Consensus 167 ~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~--------- 237 (704)
...|.-++|++..|..|-- + -.+| .-.|+|+.|+.|||||+++||||.-+.---+.+.|
T Consensus 13 ~~pf~aivGqd~lk~aL~l--~-av~P---------~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGL--N-AVDP---------QIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred ccchhhhcCchHHHHHHhh--h-hccc---------ccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 4568889999987765432 1 3334 34689999999999999999999866321111111
Q ss_pred ----c-------------------cccch-hhhhHHH------HHH-------HHH---HHhhCCCeEEEEccchhhhcc
Q 005285 238 ----A-------------------EFTDS-EKSGAAR------INE-------MFS---IARRNAPAFVFVDEIDAIAGR 277 (704)
Q Consensus 238 ----s-------------------~~~~~-~~~g~~~------vr~-------lF~---~Ak~~~P~ILfIDEiDal~~~ 277 (704)
. .|+.. .+..+.+ +.. .|+ .|+.+ ..||+|||+..|.
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~An-RGIlYvDEvnlL~-- 157 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARAN-RGILYVDEVNLLD-- 157 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhcc-CCEEEEecccccc--
Confidence 0 01111 1111221 111 111 23333 3699999998884
Q ss_pred CCCCChhHHHHHHHHHHHhcCCcc---cCCccccccCccEEEEEEcCCCC-CCcccccCCCccceeeeeCCC-CHHHHHH
Q 005285 278 HARKDPRRRATFEALIAQLDGDKE---RTGIDRFSLRQAVIFICATNRPD-ELDLEFVRPGRIDRRLYIGLP-DAKQRVQ 352 (704)
Q Consensus 278 ~~~~~~e~~~~ln~LL~~ld~~~~---~~~~~~~~~~~~ViVIaaTN~p~-~LD~aLlRpgRfd~~I~v~~P-d~~eR~~ 352 (704)
+..++.||..+..-.+ ..| -.+.-...+++|+|+|.-+ .|-|.|+. ||...|.+..| +.++|.+
T Consensus 158 --------d~lvd~LLd~aaeG~n~vereG-isi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~ 226 (423)
T COG1239 158 --------DHLVDALLDVAAEGVNDVEREG-ISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVE 226 (423)
T ss_pred --------HHHHHHHHHHHHhCCceeeeCc-eeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHHH
Confidence 4578888888876322 122 1233345699999999753 67788888 99999999776 6899999
Q ss_pred HHHHHhc
Q 005285 353 IFDVHSA 359 (704)
Q Consensus 353 Il~~~l~ 359 (704)
|++..+.
T Consensus 227 Ii~r~~~ 233 (423)
T COG1239 227 IIRRRLA 233 (423)
T ss_pred HHHHHHH
Confidence 9887654
No 208
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.83 E-value=7.2e-08 Score=109.80 Aligned_cols=192 Identities=17% Similarity=0.274 Sum_probs=124.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHc----------CCCEEEEeCccccchh---hh--------------hHHHHHHHHHHH
Q 005285 206 GVLLSGPPGTGKTLFARTLAKES----------GLPFVFASGAEFTDSE---KS--------------GAARINEMFSIA 258 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~----------g~~~v~is~s~~~~~~---~~--------------g~~~vr~lF~~A 258 (704)
.+.++|-||||||.+++.+-.++ ..+++.|++..+.+.. .. +...+..-|...
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 68899999999999999997754 3578899998887641 11 111233334322
Q ss_pred h-hCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCC---C
Q 005285 259 R-RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRP---G 334 (704)
Q Consensus 259 k-~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRp---g 334 (704)
+ +..+|||+|||+|.|..++ ..++..++..-.- ....++||+..|..+. +..++-+ .
T Consensus 504 k~~~~~~VvLiDElD~Lvtr~-------QdVlYn~fdWpt~-----------~~sKLvvi~IaNTmdl-PEr~l~nrvsS 564 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTRS-------QDVLYNIFDWPTL-----------KNSKLVVIAIANTMDL-PERLLMNRVSS 564 (767)
T ss_pred CCCCCCEEEEeccHHHHhccc-------HHHHHHHhcCCcC-----------CCCceEEEEecccccC-HHHHhccchhh
Confidence 2 3458999999999998652 3344444443221 2234777777776543 2222211 2
Q ss_pred ccc-eeeeeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHH--HHHHHHHHHHHHHHhCC-------Cccc
Q 005285 335 RID-RRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGAD--IRNLVNESGIMSVRKGH-------SKIQ 404 (704)
Q Consensus 335 Rfd-~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgad--L~~Lv~eA~~~A~r~~~-------~~It 404 (704)
|++ +.|.|.+++..+..+|+...+.+...-.+--.+-+|+..+..||.. .-.+|+.|+..|..+.. ..|+
T Consensus 565 Rlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~k~~~~q~v~ 644 (767)
T KOG1514|consen 565 RLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKGKLAVSQLVG 644 (767)
T ss_pred hccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccccccccceee
Confidence 543 4789999999999999999887763332222344444444455532 33678888888876654 5578
Q ss_pred HHHHHHHHHHHH
Q 005285 405 QQDIVDVLDKQL 416 (704)
Q Consensus 405 ~~dl~~Al~~~~ 416 (704)
..|+.+|++.++
T Consensus 645 ~~~v~~Ai~em~ 656 (767)
T KOG1514|consen 645 ILHVMEAINEML 656 (767)
T ss_pred hHHHHHHHHHHh
Confidence 889999988765
No 209
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.81 E-value=4.1e-08 Score=95.76 Aligned_cols=134 Identities=20% Similarity=0.305 Sum_probs=86.6
Q ss_pred cCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCC-----------------------C
Q 005285 175 LGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGL-----------------------P 231 (704)
Q Consensus 175 G~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~-----------------------~ 231 (704)
|++++++.|...+. + .+.|..+||+||+|+||+++|+++|+.+-. .
T Consensus 1 gq~~~~~~L~~~~~---~--------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIK---S--------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHH---C--------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHH---c--------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 45555555554433 2 257789999999999999999999986521 2
Q ss_pred EEEEeCccccchhhhhHHHHHHHHHHHhh----CCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccc
Q 005285 232 FVFASGAEFTDSEKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDR 307 (704)
Q Consensus 232 ~v~is~s~~~~~~~~g~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~ 307 (704)
++.++...... ..+...++.+...+.. ...-|++||++|.+. ....|.||..|+....
T Consensus 70 ~~~~~~~~~~~--~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~----------~~a~NaLLK~LEepp~------ 131 (162)
T PF13177_consen 70 FIIIKPDKKKK--SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT----------EEAQNALLKTLEEPPE------ 131 (162)
T ss_dssp EEEEETTTSSS--SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-----------HHHHHHHHHHHHSTTT------
T ss_pred eEEEecccccc--hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh----------HHHHHHHHHHhcCCCC------
Confidence 34443332211 1123456666555433 345799999999984 3478999999988543
Q ss_pred cccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCC
Q 005285 308 FSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLP 345 (704)
Q Consensus 308 ~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~P 345 (704)
++++|.+|+.++.|.+.+++ |+ ..+.|++.
T Consensus 132 -----~~~fiL~t~~~~~il~TI~S--Rc-~~i~~~~l 161 (162)
T PF13177_consen 132 -----NTYFILITNNPSKILPTIRS--RC-QVIRFRPL 161 (162)
T ss_dssp -----TEEEEEEES-GGGS-HHHHT--TS-EEEEE---
T ss_pred -----CEEEEEEECChHHChHHHHh--hc-eEEecCCC
Confidence 47899999999999999999 88 56666654
No 210
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=9.7e-09 Score=113.11 Aligned_cols=218 Identities=19% Similarity=0.307 Sum_probs=128.0
Q ss_pred CccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcC---------CC-EEEEe
Q 005285 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESG---------LP-FVFAS 236 (704)
Q Consensus 167 ~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g---------~~-~v~is 236 (704)
..+|.||+|++.+|..+.... ...+++||+||||||||++|+.+..-+- +. +.+++
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAA--------------AGgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~ 240 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAA--------------AGGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLA 240 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHH--------------hcCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhc
Confidence 348999999999998876542 2356899999999999999999865321 00 01111
Q ss_pred Cc-----------cccchhhhhHHHHHHHHH---------HHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHh
Q 005285 237 GA-----------EFTDSEKSGAARINEMFS---------IARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQL 296 (704)
Q Consensus 237 ~s-----------~~~~~~~~g~~~vr~lF~---------~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~l 296 (704)
+. -|.... ..++ ...+.- -...+ ..||||||+-.+ ..++++.|.+-|
T Consensus 241 g~~~~~~~~~~~rPFr~PH-HsaS-~~aLvGGG~~p~PGeIsLAH-~GVLFLDElpef----------~~~iLe~LR~PL 307 (490)
T COG0606 241 GDLHEGCPLKIHRPFRAPH-HSAS-LAALVGGGGVPRPGEISLAH-NGVLFLDELPEF----------KRSILEALREPL 307 (490)
T ss_pred ccccccCccceeCCccCCC-ccch-HHHHhCCCCCCCCCceeeec-CCEEEeeccchh----------hHHHHHHHhCcc
Confidence 10 011000 0000 001100 01112 269999999765 246788888777
Q ss_pred cCCcccCC--ccccccCccEEEEEEcCCCC-----------------------CCcccccCCCccceeeeeCCCCHHHHH
Q 005285 297 DGDKERTG--IDRFSLRQAVIFICATNRPD-----------------------ELDLEFVRPGRIDRRLYIGLPDAKQRV 351 (704)
Q Consensus 297 d~~~~~~~--~~~~~~~~~ViVIaaTN~p~-----------------------~LD~aLlRpgRfd~~I~v~~Pd~~eR~ 351 (704)
+.-...-. .....-...+.+|+|+|..- .|...|++ |||..++++.++..++.
T Consensus 308 E~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lD--RiDl~vev~~~~~~e~~ 385 (490)
T COG0606 308 ENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLD--RIDLMVEVPRLSAGELI 385 (490)
T ss_pred ccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHh--hhhheecccCCCHHHhh
Confidence 65332110 00111123578889998622 13335566 99999999988743331
Q ss_pred --------------HHHHHH----hcCCCc--c----------------ccccHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 005285 352 --------------QIFDVH----SAGKQL--A----------------EDVNFEELVFRTVGFSGADIRNLVNESGIMS 395 (704)
Q Consensus 352 --------------~Il~~~----l~~~~l--~----------------~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A 395 (704)
.+++.+ .+...+ . .+.++-+.+-..-++|.+....+++-|..+|
T Consensus 386 ~~~~~~ess~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~~~~~L~~al~~~~lS~R~~~rILKvarTiA 465 (490)
T COG0606 386 RQVPTGESSAGVRERVAKAREAQIARAGRIGINAELSEEALRKFCALQREDADLLKAALERLGLSARAYHRILKVARTIA 465 (490)
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHHhhccCcchhcCHHHHHHhcccCHhHHHHHHHHHHhcchhHHHHHHHHHHHhhhh
Confidence 122111 011111 1 1122333455567888888999999999888
Q ss_pred HHhCCCcccHHHHHHHHH
Q 005285 396 VRKGHSKIQQQDIVDVLD 413 (704)
Q Consensus 396 ~r~~~~~It~~dl~~Al~ 413 (704)
--++.+.|...|+.+|+.
T Consensus 466 DL~g~~~i~~~hl~eAi~ 483 (490)
T COG0606 466 DLEGSEQIERSHLAEAIS 483 (490)
T ss_pred cccCcchhhHHHHHHHHh
Confidence 888888899999988886
No 211
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.79 E-value=1.7e-07 Score=100.86 Aligned_cols=131 Identities=24% Similarity=0.313 Sum_probs=93.8
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCCC---------------------EEEEe--Cccccch--hhhhHHHHHHHHH
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLP---------------------FVFAS--GAEFTDS--EKSGAARINEMFS 256 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~g~~---------------------~v~is--~s~~~~~--~~~g~~~vr~lF~ 256 (704)
+.|..+||+||+|+||+++|.++|..+-+. +..+. ..+-... ...+...+|.+.+
T Consensus 24 rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~ 103 (319)
T PRK08769 24 RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQ 103 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHH
Confidence 678899999999999999999999865321 22221 1000000 0123445676665
Q ss_pred HHhhC----CCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCcccccC
Q 005285 257 IARRN----APAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVR 332 (704)
Q Consensus 257 ~Ak~~----~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlR 332 (704)
.+... .-.|++||++|.+. ....|.||+.|+.-.. ++++|.+|+.++.|.|.+++
T Consensus 104 ~~~~~p~~g~~kV~iI~~ae~m~----------~~AaNaLLKtLEEPp~-----------~~~fiL~~~~~~~lLpTIrS 162 (319)
T PRK08769 104 KLALTPQYGIAQVVIVDPADAIN----------RAACNALLKTLEEPSP-----------GRYLWLISAQPARLPATIRS 162 (319)
T ss_pred HHhhCcccCCcEEEEeccHhhhC----------HHHHHHHHHHhhCCCC-----------CCeEEEEECChhhCchHHHh
Confidence 55432 23699999999994 3478999999987543 36788889999999999999
Q ss_pred CCccceeeeeCCCCHHHHHHHHHH
Q 005285 333 PGRIDRRLYIGLPDAKQRVQIFDV 356 (704)
Q Consensus 333 pgRfd~~I~v~~Pd~~eR~~Il~~ 356 (704)
|+ ..+.|+.|+.++..+.|..
T Consensus 163 --RC-q~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 163 --RC-QRLEFKLPPAHEALAWLLA 183 (319)
T ss_pred --hh-eEeeCCCcCHHHHHHHHHH
Confidence 98 6789999999888887764
No 212
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.76 E-value=5.2e-08 Score=109.78 Aligned_cols=211 Identities=19% Similarity=0.194 Sum_probs=118.8
Q ss_pred cccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccccchhh
Q 005285 169 MYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEK 245 (704)
Q Consensus 169 ~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~~~~~ 245 (704)
.+.+++|.....+.+...+..+. .....++|+|++||||+++|+++.... +.||+.++|..+.+...
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIA----------PSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHh----------CCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 45667777654444444333221 234569999999999999999997764 56999999998754311
Q ss_pred hhH-------------HHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCc
Q 005285 246 SGA-------------ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQ 312 (704)
Q Consensus 246 ~g~-------------~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~ 312 (704)
... ......|..| ...+|||||+|.+.. .....|+..++...............
T Consensus 207 ~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~~l~~----------~~q~~l~~~l~~~~~~~~~~~~~~~~ 273 (445)
T TIGR02915 207 ESELFGYEKGAFTGAVKQTLGKIEYA---HGGTLFLDEIGDLPL----------NLQAKLLRFLQERVIERLGGREEIPV 273 (445)
T ss_pred HHHhcCCCCCCcCCCccCCCCceeEC---CCCEEEEechhhCCH----------HHHHHHHHHHhhCeEEeCCCCceeee
Confidence 100 0001112222 346899999999952 24556666665432111000112233
Q ss_pred cEEEEEEcCCCC-------CCcccccCCCccceeeeeCCCCHHHHHH----HHHHHhcC------CC--ccccccHHHHH
Q 005285 313 AVIFICATNRPD-------ELDLEFVRPGRIDRRLYIGLPDAKQRVQ----IFDVHSAG------KQ--LAEDVNFEELV 373 (704)
Q Consensus 313 ~ViVIaaTN~p~-------~LD~aLlRpgRfd~~I~v~~Pd~~eR~~----Il~~~l~~------~~--l~~dvdl~~La 373 (704)
++.+|+||+..- .+.+.|.. |+. .+.+..|...+|.+ +++.++.. .. -..+..+..|.
T Consensus 274 ~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~ 350 (445)
T TIGR02915 274 DVRIVCATNQDLKRMIAEGTFREDLFY--RIA-EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALE 350 (445)
T ss_pred ceEEEEecCCCHHHHHHcCCccHHHHH--Hhc-cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 578899887641 22333332 442 46677787777754 33333321 11 01122345565
Q ss_pred HhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHH
Q 005285 374 FRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDI 408 (704)
Q Consensus 374 ~~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl 408 (704)
...---+.++|+++++.|...+. ...|+.+++
T Consensus 351 ~~~wpgNvreL~~~i~~a~~~~~---~~~i~~~~l 382 (445)
T TIGR02915 351 AHAWPGNVRELENKVKRAVIMAE---GNQITAEDL 382 (445)
T ss_pred hCCCCChHHHHHHHHHHHHHhCC---CCcccHHHc
Confidence 55444467889999988886542 345776664
No 213
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.75 E-value=5.6e-08 Score=113.26 Aligned_cols=101 Identities=16% Similarity=0.266 Sum_probs=64.8
Q ss_pred ccEEEEEEcCCC--CCCcccccCCCccc---eeeeeCC--C-CHHHHHHHHHHHhc---CCCcccccc---HHHHHH---
Q 005285 312 QAVIFICATNRP--DELDLEFVRPGRID---RRLYIGL--P-DAKQRVQIFDVHSA---GKQLAEDVN---FEELVF--- 374 (704)
Q Consensus 312 ~~ViVIaaTN~p--~~LD~aLlRpgRfd---~~I~v~~--P-d~~eR~~Il~~~l~---~~~l~~dvd---l~~La~--- 374 (704)
..+.||+++|+. ..+||.|.. ||. ..+.+.. + +.+.+..+++...+ .......++ +..|.+
T Consensus 276 ~dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~ 353 (637)
T PRK13765 276 CDFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAK 353 (637)
T ss_pred eeeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHH
Confidence 457899999884 467889888 885 4455542 2 35566666653332 110111222 222222
Q ss_pred hccC------CCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Q 005285 375 RTVG------FSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414 (704)
Q Consensus 375 ~t~G------~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al~~ 414 (704)
+-.| +..++|.+++++|...|..++...++.+|+.+|+.+
T Consensus 354 R~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 354 RRAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKKI 399 (637)
T ss_pred HHhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHHh
Confidence 2222 346899999999999999999999999999988764
No 214
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.75 E-value=2.1e-07 Score=101.08 Aligned_cols=129 Identities=15% Similarity=0.194 Sum_probs=94.1
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCC------------------------CEEEEeCccccchhhhhHHHHHHHHHH
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKESGL------------------------PFVFASGAEFTDSEKSGAARINEMFSI 257 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~g~------------------------~~v~is~s~~~~~~~~g~~~vr~lF~~ 257 (704)
+.|..+||+||+|+||+++|+++|..+-. .+..+....- ...-+...+|.+-+.
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~--~~~I~idqiR~l~~~ 99 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG--KSSLGVDAVREVTEK 99 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc--cccCCHHHHHHHHHH
Confidence 67889999999999999999999986522 1222221100 001233456655544
Q ss_pred Hh----hCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCC
Q 005285 258 AR----RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRP 333 (704)
Q Consensus 258 Ak----~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRp 333 (704)
+. .....|++||++|.+. .+..|.||+.|+.-. .++++|..|+.++.|.|.+++
T Consensus 100 ~~~~~~~g~~kV~iI~~ae~m~----------~~AaNaLLKtLEEPp-----------~~t~fiL~t~~~~~lLpTIrS- 157 (334)
T PRK07993 100 LYEHARLGGAKVVWLPDAALLT----------DAAANALLKTLEEPP-----------ENTWFFLACREPARLLATLRS- 157 (334)
T ss_pred HhhccccCCceEEEEcchHhhC----------HHHHHHHHHHhcCCC-----------CCeEEEEEECChhhChHHHHh-
Confidence 43 3345799999999994 347899999998743 347899999999999999999
Q ss_pred CccceeeeeCCCCHHHHHHHHHH
Q 005285 334 GRIDRRLYIGLPDAKQRVQIFDV 356 (704)
Q Consensus 334 gRfd~~I~v~~Pd~~eR~~Il~~ 356 (704)
|+. .+.|++|+.++..+.|..
T Consensus 158 -RCq-~~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 158 -RCR-LHYLAPPPEQYALTWLSR 178 (334)
T ss_pred -ccc-cccCCCCCHHHHHHHHHH
Confidence 985 689999999888887764
No 215
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.74 E-value=1.4e-07 Score=112.10 Aligned_cols=137 Identities=16% Similarity=0.139 Sum_probs=80.2
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcC-------CCEEEEeCccccchh--hhhHHHHH-HHHHHHhhCCCeEEEEccc
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKESG-------LPFVFASGAEFTDSE--KSGAARIN-EMFSIARRNAPAFVFVDEI 271 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~g-------~~~v~is~s~~~~~~--~~g~~~vr-~lF~~Ak~~~P~ILfIDEi 271 (704)
+..-+|||.|+||||||.+|+++++-+. .++..+.+..+.... ..+...++ ..+.. ....++||||+
T Consensus 490 RgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLvl---AdgGtL~IDEi 566 (915)
T PTZ00111 490 RGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVL---ANGGVCCIDEL 566 (915)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccCCcEEE---cCCCeEEecch
Confidence 3445899999999999999999988543 344444333322100 00100000 00111 12359999999
Q ss_pred hhhhccCCCCChhHHHHHHHHHHHhcCCcc--cCCccccccCccEEEEEEcCCCC-------------CCcccccCCCcc
Q 005285 272 DAIAGRHARKDPRRRATFEALIAQLDGDKE--RTGIDRFSLRQAVIFICATNRPD-------------ELDLEFVRPGRI 336 (704)
Q Consensus 272 Dal~~~~~~~~~e~~~~ln~LL~~ld~~~~--~~~~~~~~~~~~ViVIaaTN~p~-------------~LD~aLlRpgRf 336 (704)
|.+.. .....|+..|+.... ...+.....+..+.||||+|... .|+++|++ ||
T Consensus 567 dkms~----------~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RF 634 (915)
T PTZ00111 567 DKCHN----------ESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RF 634 (915)
T ss_pred hhCCH----------HHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hh
Confidence 99842 245667777755331 11111123345689999999742 47889999 99
Q ss_pred ceee-eeCCCCHHHHHHH
Q 005285 337 DRRL-YIGLPDAKQRVQI 353 (704)
Q Consensus 337 d~~I-~v~~Pd~~eR~~I 353 (704)
|..+ .++.|+.+.=..|
T Consensus 635 DLIf~l~D~~d~~~D~~l 652 (915)
T PTZ00111 635 DLIYLVLDHIDQDTDQLI 652 (915)
T ss_pred cEEEEecCCCChHHHHHH
Confidence 9854 4577776554444
No 216
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.73 E-value=3.8e-07 Score=98.42 Aligned_cols=129 Identities=16% Similarity=0.256 Sum_probs=95.4
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCCC------------------------EEEEeCccccchhhhhHHHHHHHHHH
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLP------------------------FVFASGAEFTDSEKSGAARINEMFSI 257 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~g~~------------------------~v~is~s~~~~~~~~g~~~vr~lF~~ 257 (704)
+.|.++||+||+|+||+++|+++|+.+-.. |+.+... +....+...+|.+-+.
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~---~~~~I~id~iR~l~~~ 98 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPI---DNKDIGVDQVREINEK 98 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccc---cCCCCCHHHHHHHHHH
Confidence 578899999999999999999999865321 2222211 0111234556666554
Q ss_pred Hh----hCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCC
Q 005285 258 AR----RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRP 333 (704)
Q Consensus 258 Ak----~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRp 333 (704)
+. .....|++||++|.+. ....|.||+.|+.-. .++++|.+|+.++.|.|.+++
T Consensus 99 ~~~~~~~g~~KV~iI~~a~~m~----------~~AaNaLLKtLEEPp-----------~~~~fiL~t~~~~~llpTI~S- 156 (325)
T PRK06871 99 VSQHAQQGGNKVVYIQGAERLT----------EAAANALLKTLEEPR-----------PNTYFLLQADLSAALLPTIYS- 156 (325)
T ss_pred HhhccccCCceEEEEechhhhC----------HHHHHHHHHHhcCCC-----------CCeEEEEEECChHhCchHHHh-
Confidence 43 2334699999999994 347899999998744 347888899999999999998
Q ss_pred CccceeeeeCCCCHHHHHHHHHHH
Q 005285 334 GRIDRRLYIGLPDAKQRVQIFDVH 357 (704)
Q Consensus 334 gRfd~~I~v~~Pd~~eR~~Il~~~ 357 (704)
|+ ..+.|++|+.++..+.|...
T Consensus 157 -RC-~~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 157 -RC-QTWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred -hc-eEEeCCCCCHHHHHHHHHHH
Confidence 88 67899999999988888754
No 217
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.72 E-value=8.8e-08 Score=99.45 Aligned_cols=132 Identities=14% Similarity=0.214 Sum_probs=84.1
Q ss_pred CCCccccceecC-cccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccc
Q 005285 165 DTKSMYKEVVLG-GDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEF 240 (704)
Q Consensus 165 ~~~~~f~dVvG~-~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~ 240 (704)
....+|++.... ++.+..+..+..+.++.. ....+++|+|+||||||+|+.++|.++ |..+++++..++
T Consensus 66 ~~~~tFdnf~~~~~~q~~al~~a~~~~~~~~-------~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l 138 (244)
T PRK07952 66 HQNCSFENYRVECEGQMNALSKARQYVEEFD-------GNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADI 138 (244)
T ss_pred ccCCccccccCCCchHHHHHHHHHHHHHhhc-------cCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHH
Confidence 345688887544 344456666666664431 123589999999999999999999887 788999998888
Q ss_pred cchhhhh----HHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEE
Q 005285 241 TDSEKSG----AARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (704)
Q Consensus 241 ~~~~~~g----~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (704)
....... ......+++... ...+|+|||++... ..+.....+.+++..-... .-.+
T Consensus 139 ~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~-----~s~~~~~~l~~Ii~~Ry~~-------------~~~t 198 (244)
T PRK07952 139 MSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQT-----ESRYEKVIINQIVDRRSSS-------------KRPT 198 (244)
T ss_pred HHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCC-----CCHHHHHHHHHHHHHHHhC-------------CCCE
Confidence 7643211 111233444433 45799999998763 2333445666666543211 1256
Q ss_pred EEEcCCC
Q 005285 317 ICATNRP 323 (704)
Q Consensus 317 IaaTN~p 323 (704)
|.|||..
T Consensus 199 iitSNl~ 205 (244)
T PRK07952 199 GMLTNSN 205 (244)
T ss_pred EEeCCCC
Confidence 7788864
No 218
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.70 E-value=1.9e-07 Score=106.06 Aligned_cols=210 Identities=17% Similarity=0.167 Sum_probs=121.0
Q ss_pred cccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccccchhh
Q 005285 169 MYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEK 245 (704)
Q Consensus 169 ~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~~~~~ 245 (704)
.|.+++|.....+.+...+..+. .....||+.|++|||||++|+++.... +.||+.++|..+.....
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~ 205 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLS----------RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLI 205 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHh----------ccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHH
Confidence 45678887654444443333221 234569999999999999999998865 57999999998744211
Q ss_pred hhHHHHHHHHHHH---------------hhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccc
Q 005285 246 SGAARINEMFSIA---------------RRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSL 310 (704)
Q Consensus 246 ~g~~~vr~lF~~A---------------k~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~ 310 (704)
-..+|... .......|||||+|.+.. .....|+..++........+....
T Consensus 206 -----~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~----------~~q~~L~~~l~~~~~~~~~~~~~~ 270 (469)
T PRK10923 206 -----ESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPL----------DVQTRLLRVLADGQFYRVGGYAPV 270 (469)
T ss_pred -----HHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCH----------HHHHHHHHHHhcCcEEeCCCCCeE
Confidence 11122111 011245799999999852 244566666654321111111122
Q ss_pred CccEEEEEEcCCCC-------CCcccccCCCccceeeeeCCCCHHHHHH----HHHHHhcC----C--Cc--cccccHHH
Q 005285 311 RQAVIFICATNRPD-------ELDLEFVRPGRIDRRLYIGLPDAKQRVQ----IFDVHSAG----K--QL--AEDVNFEE 371 (704)
Q Consensus 311 ~~~ViVIaaTN~p~-------~LD~aLlRpgRfd~~I~v~~Pd~~eR~~----Il~~~l~~----~--~l--~~dvdl~~ 371 (704)
..++.+|+||+..- .+.+.|.. ||. .+.+..|...+|.+ ++..++.. . .. ..+..+..
T Consensus 271 ~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~ 347 (469)
T PRK10923 271 KVDVRIIAATHQNLEQRVQEGKFREDLFH--RLN-VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAA 347 (469)
T ss_pred EeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHH
Confidence 34578999987631 23344444 552 35666666555543 44444321 1 11 11223555
Q ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHH
Q 005285 372 LVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIV 409 (704)
Q Consensus 372 La~~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~ 409 (704)
|....---+-++|+|+++.+...+ ....|+.+|+.
T Consensus 348 L~~~~wpgNv~eL~~~i~~~~~~~---~~~~i~~~~l~ 382 (469)
T PRK10923 348 LTRLAWPGNVRQLENTCRWLTVMA---AGQEVLIQDLP 382 (469)
T ss_pred HHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCc
Confidence 665554456788999998888765 23467777764
No 219
>PRK12377 putative replication protein; Provisional
Probab=98.69 E-value=1.1e-07 Score=98.86 Aligned_cols=131 Identities=14% Similarity=0.151 Sum_probs=78.4
Q ss_pred CCccccceecC-cccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCcccc
Q 005285 166 TKSMYKEVVLG-GDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFT 241 (704)
Q Consensus 166 ~~~~f~dVvG~-~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~ 241 (704)
...+|++.... +..+..+..+..+..+.. ....+++|+||||||||+||.|+|+++ |..+++++..++.
T Consensus 69 ~~~tFdnf~~~~~~~~~a~~~a~~~a~~~~-------~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~ 141 (248)
T PRK12377 69 RKCSFANYQVQNDGQRYALSQAKSIADELM-------TGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVM 141 (248)
T ss_pred ccCCcCCcccCChhHHHHHHHHHHHHHHHH-------hcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHH
Confidence 45578877543 333334444444433321 124689999999999999999999876 7888889888877
Q ss_pred chhhhhH---HHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEE
Q 005285 242 DSEKSGA---ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFIC 318 (704)
Q Consensus 242 ~~~~~g~---~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIa 318 (704)
....... .....+++.. ....+|+|||++... ........+.+++..-... ..-+|.
T Consensus 142 ~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~-----~s~~~~~~l~~ii~~R~~~-------------~~ptii 201 (248)
T PRK12377 142 SRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQR-----ETKNEQVVLNQIIDRRTAS-------------MRSVGM 201 (248)
T ss_pred HHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCC-----CCHHHHHHHHHHHHHHHhc-------------CCCEEE
Confidence 6532211 0122333333 345799999997653 1223344555555543221 124677
Q ss_pred EcCCC
Q 005285 319 ATNRP 323 (704)
Q Consensus 319 aTN~p 323 (704)
|||..
T Consensus 202 tSNl~ 206 (248)
T PRK12377 202 LTNLN 206 (248)
T ss_pred EcCCC
Confidence 89864
No 220
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.69 E-value=2.7e-07 Score=104.32 Aligned_cols=187 Identities=20% Similarity=0.250 Sum_probs=107.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccccchhhhhH-------------HHHHHHHHHHhhCCCeEEE
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKSGA-------------ARINEMFSIARRNAPAFVF 267 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~~~~~~g~-------------~~vr~lF~~Ak~~~P~ILf 267 (704)
...+|++|++||||+++|+++.... +.||+.++|..+........ ......|..| ...+||
T Consensus 166 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ 242 (457)
T PRK11361 166 QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERA---NEGTLL 242 (457)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEEC---CCCEEE
Confidence 3579999999999999999997654 57999999998754311000 0000122222 246899
Q ss_pred EccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccce-------ee
Q 005285 268 VDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDR-------RL 340 (704)
Q Consensus 268 IDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~-------~I 340 (704)
|||+|.+.. .....|+..++...............++.+|+|||..- . .+.+.|+|.. .+
T Consensus 243 ld~i~~l~~----------~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l--~-~~~~~g~~~~~l~~~l~~~ 309 (457)
T PRK11361 243 LDEIGEMPL----------VLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDL--Q-AMVKEGTFREDLFYRLNVI 309 (457)
T ss_pred EechhhCCH----------HHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCH--H-HHHHcCCchHHHHHHhccc
Confidence 999999952 24566666665432111111112234588999998632 1 2222233322 46
Q ss_pred eeCCCCHHHHHH----HHHHHhcC------CC--ccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHH
Q 005285 341 YIGLPDAKQRVQ----IFDVHSAG------KQ--LAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDI 408 (704)
Q Consensus 341 ~v~~Pd~~eR~~----Il~~~l~~------~~--l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl 408 (704)
.+..|...+|.+ ++..++.. .. -..+..+..|....---+-++|+++++.|...+ ....|+.+|+
T Consensus 310 ~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~---~~~~i~~~~l 386 (457)
T PRK11361 310 HLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMN---SGPIIFSEDL 386 (457)
T ss_pred eecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhC---CCCcccHHHC
Confidence 678888777754 22223221 11 011222445555544446788888888877654 3346777776
Q ss_pred H
Q 005285 409 V 409 (704)
Q Consensus 409 ~ 409 (704)
.
T Consensus 387 ~ 387 (457)
T PRK11361 387 P 387 (457)
T ss_pred h
Confidence 4
No 221
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.69 E-value=8.5e-08 Score=102.94 Aligned_cols=101 Identities=21% Similarity=0.308 Sum_probs=65.8
Q ss_pred CccccceecCc-ccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccccc
Q 005285 167 KSMYKEVVLGG-DVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTD 242 (704)
Q Consensus 167 ~~~f~dVvG~~-~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~~ 242 (704)
..+|+++...+ +.+..+.....|+.+.. . .+..+|++|+||+|||||+||.|+|+++ |.++.+++..+|..
T Consensus 123 ~atf~~~~~~~~~~~~~~~~~~~fi~~~~---~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~ 197 (306)
T PRK08939 123 QASLADIDLDDRDRLDALMAALDFLEAYP---P--GEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIR 197 (306)
T ss_pred cCcHHHhcCCChHHHHHHHHHHHHHHHhh---c--cCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHH
Confidence 35677765443 23334444455554321 1 1246899999999999999999999987 88899998888765
Q ss_pred hhhhh--HHHHHHHHHHHhhCCCeEEEEccchhh
Q 005285 243 SEKSG--AARINEMFSIARRNAPAFVFVDEIDAI 274 (704)
Q Consensus 243 ~~~~g--~~~vr~lF~~Ak~~~P~ILfIDEiDal 274 (704)
..... ...+...++..+ ...+|+|||+.+-
T Consensus 198 ~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e 229 (306)
T PRK08939 198 ELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAE 229 (306)
T ss_pred HHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCc
Confidence 53211 112334444433 3469999999754
No 222
>PRK08181 transposase; Validated
Probab=98.67 E-value=1e-07 Score=100.44 Aligned_cols=86 Identities=17% Similarity=0.343 Sum_probs=58.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH---cCCCEEEEeCccccchhhhhH--HHHHHHHHHHhhCCCeEEEEccchhhhccC
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEFTDSEKSGA--ARINEMFSIARRNAPAFVFVDEIDAIAGRH 278 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e---~g~~~v~is~s~~~~~~~~g~--~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~ 278 (704)
..+++|+||||||||+||.|+|.+ .|..+++++..++........ ......+.... .+.+|+|||++.+..
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~~-- 181 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVTK-- 181 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEeccccccC--
Confidence 368999999999999999999875 488899999888777532221 12333444433 457999999987642
Q ss_pred CCCChhHHHHHHHHHHHh
Q 005285 279 ARKDPRRRATFEALIAQL 296 (704)
Q Consensus 279 ~~~~~e~~~~ln~LL~~l 296 (704)
++.....+.++++..
T Consensus 182 ---~~~~~~~Lf~lin~R 196 (269)
T PRK08181 182 ---DQAETSVLFELISAR 196 (269)
T ss_pred ---CHHHHHHHHHHHHHH
Confidence 233334555555544
No 223
>PRK06526 transposase; Provisional
Probab=98.63 E-value=5.9e-08 Score=101.48 Aligned_cols=99 Identities=27% Similarity=0.429 Sum_probs=63.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccccchhhhh--HHHHHHHHHHHhhCCCeEEEEccchhhhccC
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKSG--AARINEMFSIARRNAPAFVFVDEIDAIAGRH 278 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~~~~~~g--~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~ 278 (704)
+.+++|+||||||||+||.+++.++ |..+++++..++....... ...+...+... ..+.+|+|||++.+..
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~-- 173 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPF-- 173 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCC--
Confidence 4689999999999999999998764 7788888877776553211 11122222222 3467999999997742
Q ss_pred CCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCC
Q 005285 279 ARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRP 323 (704)
Q Consensus 279 ~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p 323 (704)
+......+.+++...... -.+|.|||.+
T Consensus 174 ---~~~~~~~L~~li~~r~~~--------------~s~IitSn~~ 201 (254)
T PRK06526 174 ---EPEAANLFFQLVSSRYER--------------ASLIVTSNKP 201 (254)
T ss_pred ---CHHHHHHHHHHHHHHHhc--------------CCEEEEcCCC
Confidence 233334455555543321 1367788875
No 224
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=1.6e-07 Score=111.41 Aligned_cols=138 Identities=20% Similarity=0.226 Sum_probs=100.9
Q ss_pred ceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccccch-----
Q 005285 172 EVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDS----- 243 (704)
Q Consensus 172 dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~~~----- 243 (704)
.|+||+++...+.+.+.--+.... +. +++-.+||.||.|+|||-||+|+|..+ .-.++.+++++|.+.
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~--~~--~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evsklig 638 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLK--DP--NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIG 638 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccC--CC--CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccC
Confidence 467888777666666654333210 00 356778999999999999999999975 457899999986652
Q ss_pred ---hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEc
Q 005285 244 ---EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (704)
Q Consensus 244 ---~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (704)
...|......+.+..+.+..+||+|||||.-- ...+|.|+..+|......+..+...-.++|||+|+
T Consensus 639 sp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh----------~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTs 708 (898)
T KOG1051|consen 639 SPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAH----------PDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTS 708 (898)
T ss_pred CCcccccchhHHHHHHHHhcCCceEEEEechhhcC----------HHHHHHHHHHHhcCccccCCCcEeeccceEEEEec
Confidence 11344556678888888888999999999652 34778888888887766665666666789999999
Q ss_pred CCC
Q 005285 321 NRP 323 (704)
Q Consensus 321 N~p 323 (704)
|.-
T Consensus 709 n~~ 711 (898)
T KOG1051|consen 709 NVG 711 (898)
T ss_pred ccc
Confidence 863
No 225
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.61 E-value=7.1e-07 Score=96.10 Aligned_cols=130 Identities=15% Similarity=0.210 Sum_probs=94.3
Q ss_pred CccCceEEEEcCCCChHHHHHHHHHHHcCC-----------------------CEEEEeCccccchhhhhHHHHHHHHHH
Q 005285 201 VQFVRGVLLSGPPGTGKTLFARTLAKESGL-----------------------PFVFASGAEFTDSEKSGAARINEMFSI 257 (704)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAraiA~e~g~-----------------------~~v~is~s~~~~~~~~g~~~vr~lF~~ 257 (704)
.+.|..+||+||.|+||+.+|+++|..+-. .|+.+....- ....+...+|.+-+.
T Consensus 22 ~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~--~~~I~vdqiR~l~~~ 99 (319)
T PRK06090 22 GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKE--GKSITVEQIRQCNRL 99 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcC--CCcCCHHHHHHHHHH
Confidence 367889999999999999999999986522 1333322110 001123445655444
Q ss_pred Hhh----CCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCC
Q 005285 258 ARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRP 333 (704)
Q Consensus 258 Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRp 333 (704)
+.. ....|++||++|.+. ....|.||+.++.-. .++++|..|+.++.|.|.+++
T Consensus 100 ~~~~~~~~~~kV~iI~~ae~m~----------~~AaNaLLKtLEEPp-----------~~t~fiL~t~~~~~lLpTI~S- 157 (319)
T PRK06090 100 AQESSQLNGYRLFVIEPADAMN----------ESASNALLKTLEEPA-----------PNCLFLLVTHNQKRLLPTIVS- 157 (319)
T ss_pred HhhCcccCCceEEEecchhhhC----------HHHHHHHHHHhcCCC-----------CCeEEEEEECChhhChHHHHh-
Confidence 432 334799999999994 347899999998744 347889999999999999999
Q ss_pred CccceeeeeCCCCHHHHHHHHHH
Q 005285 334 GRIDRRLYIGLPDAKQRVQIFDV 356 (704)
Q Consensus 334 gRfd~~I~v~~Pd~~eR~~Il~~ 356 (704)
|+ ..+.|+.|+.++..+.+..
T Consensus 158 -RC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 158 -RC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred -cc-eeEeCCCCCHHHHHHHHHH
Confidence 98 5899999999998887764
No 226
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.61 E-value=6.6e-07 Score=103.65 Aligned_cols=199 Identities=13% Similarity=0.098 Sum_probs=131.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcC--CCEEEEeCccccch-hhhh--HHHHH---HHHH---HHhhCCCeEEEEccchh
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKESG--LPFVFASGAEFTDS-EKSG--AARIN---EMFS---IARRNAPAFVFVDEIDA 273 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e~g--~~~v~is~s~~~~~-~~~g--~~~vr---~lF~---~Ak~~~P~ILfIDEiDa 273 (704)
.||+|.|++|||||+++++++.-+. .||+.+..+--... .|.+ +..++ ..|+ .++.+ ..||||||+..
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah-~GvL~lDe~n~ 104 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEAD-GGVLVLAMAER 104 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeecc-CCEEEecCccc
Confidence 6899999999999999999999875 58887665544433 2222 11111 0010 11112 36999999987
Q ss_pred hhccCCCCChhHHHHHHHHHHHhcCCcccC--CccccccCccEEEEEEcCCC---CCCcccccCCCccceeeeeCCCCHH
Q 005285 274 IAGRHARKDPRRRATFEALIAQLDGDKERT--GIDRFSLRQAVIFICATNRP---DELDLEFVRPGRIDRRLYIGLPDAK 348 (704)
Q Consensus 274 l~~~~~~~~~e~~~~ln~LL~~ld~~~~~~--~~~~~~~~~~ViVIaaTN~p---~~LD~aLlRpgRfd~~I~v~~Pd~~ 348 (704)
+- ..+++.|+.-|+.....- ....+.-...+++|++-|.. ..|+++++. ||+.++.++.|+..
T Consensus 105 ~~----------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~~~~~~ 172 (584)
T PRK13406 105 LE----------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDLDGLALR 172 (584)
T ss_pred CC----------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEcCCCChH
Confidence 74 348899999998653322 11223334568888874432 358889999 99999999988755
Q ss_pred HH-------HHHHHH--HhcCCCccccccHHHHHHh--ccCC-CHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Q 005285 349 QR-------VQIFDV--HSAGKQLAEDVNFEELVFR--TVGF-SGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQL 416 (704)
Q Consensus 349 eR-------~~Il~~--~l~~~~l~~dvdl~~La~~--t~G~-sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al~~~~ 416 (704)
+. .+|... .+.+..+.+. .+..++.. ..|. |.+--..+++-|..+|.-+|+..|+.+||.+|+.-++
T Consensus 173 ~~~~~~~~~~~I~~AR~rl~~v~v~~~-~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~Aa~lvL 251 (584)
T PRK13406 173 DAREIPIDADDIAAARARLPAVGPPPE-AIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLALAARLVL 251 (584)
T ss_pred HhcccCCCHHHHHHHHHHHccCCCCHH-HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 42 233332 2233333222 23333322 3465 7777778999999999999999999999999999876
Q ss_pred H
Q 005285 417 L 417 (704)
Q Consensus 417 ~ 417 (704)
.
T Consensus 252 ~ 252 (584)
T PRK13406 252 A 252 (584)
T ss_pred H
Confidence 5
No 227
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.61 E-value=3.1e-07 Score=99.41 Aligned_cols=131 Identities=15% Similarity=0.221 Sum_probs=93.0
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCC-------------------------CEEEEeCccccchh-----hhhHHHH
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKESGL-------------------------PFVFASGAEFTDSE-----KSGAARI 251 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~g~-------------------------~~v~is~s~~~~~~-----~~g~~~v 251 (704)
+.|.++||+||+|+|||++|+++|+.+.. .|+.++...-.+.. ..+...+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 67889999999999999999999987532 13334332100000 1234567
Q ss_pred HHHHHHHhh----CCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCc
Q 005285 252 NEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELD 327 (704)
Q Consensus 252 r~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD 327 (704)
|.+.+.+.. ....|++||++|.+- ....|.|+..++.... ++.+|.+|+.++.+.
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld----------~~a~naLLk~LEep~~-----------~~~~Ilvth~~~~ll 157 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMN----------LQAANSLLKVLEEPPP-----------QVVFLLVSHAADKVL 157 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCC----------HHHHHHHHHHHHhCcC-----------CCEEEEEeCChHhCh
Confidence 777666653 234699999999883 2356778888776432 246777888899999
Q ss_pred ccccCCCccceeeeeCCCCHHHHHHHHHH
Q 005285 328 LEFVRPGRIDRRLYIGLPDAKQRVQIFDV 356 (704)
Q Consensus 328 ~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~ 356 (704)
+.+.+ |+ ..+.|++|+.++..+.|..
T Consensus 158 ~ti~S--Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 158 PTIKS--RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred HHHHH--Hh-hhhcCCCCCHHHHHHHHHh
Confidence 99988 88 6889999999998887764
No 228
>PRK15115 response regulator GlrR; Provisional
Probab=98.56 E-value=1.2e-06 Score=98.67 Aligned_cols=186 Identities=19% Similarity=0.252 Sum_probs=111.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccccchhhhhHHHHHHHHHHH---------------hhCCCeE
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKSGAARINEMFSIA---------------RRNAPAF 265 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~~~~~~g~~~vr~lF~~A---------------k~~~P~I 265 (704)
...++|+|++|||||++|+++.... +.||+.++|..+.+... -..+|..+ .......
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~-----~~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 231 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLL-----ESELFGHARGAFTGAVSNREGLFQAAEGGT 231 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHH-----HHHhcCCCcCCCCCCccCCCCcEEECCCCE
Confidence 3469999999999999999997764 57999999998754321 11222211 1122468
Q ss_pred EEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccce-------
Q 005285 266 VFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDR------- 338 (704)
Q Consensus 266 LfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~------- 338 (704)
|||||+|.|.. .....|+..++...............++.+|+||+.. ++..+.+ |+|..
T Consensus 232 l~l~~i~~l~~----------~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~~~~~~-~~f~~~l~~~l~ 298 (444)
T PRK15115 232 LFLDEIGDMPA----------PLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LPKAMAR-GEFREDLYYRLN 298 (444)
T ss_pred EEEEccccCCH----------HHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HHHHHHc-CCccHHHHHhhc
Confidence 99999999953 2445666666543211111111223468999999853 4433333 45521
Q ss_pred eeeeCCCCHHHHHH----HHHHHhcC------CCc--cccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHH
Q 005285 339 RLYIGLPDAKQRVQ----IFDVHSAG------KQL--AEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQ 406 (704)
Q Consensus 339 ~I~v~~Pd~~eR~~----Il~~~l~~------~~l--~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~ 406 (704)
.+.+..|...+|.+ +++.++.. ... -.+.-+..|....---+.++|.++++.|...+ ....|+.+
T Consensus 299 ~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~---~~~~i~~~ 375 (444)
T PRK15115 299 VVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALT---SSPVISDA 375 (444)
T ss_pred eeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCccChh
Confidence 56677788888743 33333321 111 12223566666664446788889998887654 23467777
Q ss_pred HHHH
Q 005285 407 DIVD 410 (704)
Q Consensus 407 dl~~ 410 (704)
++..
T Consensus 376 ~l~~ 379 (444)
T PRK15115 376 LVEQ 379 (444)
T ss_pred hhhh
Confidence 7643
No 229
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.56 E-value=6.1e-07 Score=101.60 Aligned_cols=212 Identities=20% Similarity=0.208 Sum_probs=115.4
Q ss_pred ccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccccchhhh
Q 005285 170 YKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKS 246 (704)
Q Consensus 170 f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~~~~~~ 246 (704)
+..++|.......+...+..+. .....+++.|.+||||+++|+++.... +.||+.++|..+.+....
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~a----------~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~ 202 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRLS----------RSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE 202 (463)
T ss_pred ccceeecCHHHHHHHHHHHHHh----------CcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Confidence 3457777654444433333222 234579999999999999999998764 579999999987543111
Q ss_pred hHHHHHHHHHH---------------HhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccC
Q 005285 247 GAARINEMFSI---------------ARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLR 311 (704)
Q Consensus 247 g~~~vr~lF~~---------------Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~ 311 (704)
..+|.. ........|||||||.+.. .....|+..++..............
T Consensus 203 -----~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~----------~~q~~ll~~l~~~~~~~~~~~~~~~ 267 (463)
T TIGR01818 203 -----SELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPL----------DAQTRLLRVLADGEFYRVGGRTPIK 267 (463)
T ss_pred -----HHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCH----------HHHHHHHHHHhcCcEEECCCCceee
Confidence 111110 1122357899999999853 2345566555532211111111223
Q ss_pred ccEEEEEEcCCCC-------CCcccccCCCccceeeeeCCCCHHHH----HHHHHHHhcCC----C----ccccccHHHH
Q 005285 312 QAVIFICATNRPD-------ELDLEFVRPGRIDRRLYIGLPDAKQR----VQIFDVHSAGK----Q----LAEDVNFEEL 372 (704)
Q Consensus 312 ~~ViVIaaTN~p~-------~LD~aLlRpgRfd~~I~v~~Pd~~eR----~~Il~~~l~~~----~----l~~dvdl~~L 372 (704)
.++.+|++|+..- .+.+.|.. |+. .+.+..|...+| ..+++.++... . ...+..+..|
T Consensus 268 ~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L 344 (463)
T TIGR01818 268 VDVRIVAATHQNLEALVRQGKFREDLFH--RLN-VIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERL 344 (463)
T ss_pred eeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhC-cceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHH
Confidence 3578888887531 22223333 342 245555554444 44444443211 1 1112234455
Q ss_pred HHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 005285 373 VFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (704)
Q Consensus 373 a~~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al 412 (704)
....---+-++|+++++.|...+. ...|+.+|+...+
T Consensus 345 ~~~~wpgNvreL~~~~~~~~~~~~---~~~i~~~~l~~~~ 381 (463)
T TIGR01818 345 KQLRWPGNVRQLENLCRWLTVMAS---GDEVLVSDLPAEL 381 (463)
T ss_pred HhCCCCChHHHHHHHHHHHHHhCC---CCcccHHhchHHH
Confidence 544332345888899988887652 3467777765443
No 230
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.56 E-value=2.1e-06 Score=94.32 Aligned_cols=200 Identities=17% Similarity=0.152 Sum_probs=123.7
Q ss_pred ceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc-----CCCEEEEeCccccchhhh
Q 005285 172 EVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-----GLPFVFASGAEFTDSEKS 246 (704)
Q Consensus 172 dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~-----g~~~v~is~s~~~~~~~~ 246 (704)
.+.|.++.. ..+-+|++.+. -.+.+.++.+.|-||||||.+...+-... ....++++|.++......
T Consensus 151 ~l~gRe~e~---~~v~~F~~~hl-----e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ai 222 (529)
T KOG2227|consen 151 TLKGRELEM---DIVREFFSLHL-----ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAI 222 (529)
T ss_pred CccchHHHH---HHHHHHHHhhh-----hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHH
Confidence 345555444 44444555542 24567889999999999999988774432 234589999875532111
Q ss_pred ---------------hH-HHHHHHHHH-HhhC-CCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccc
Q 005285 247 ---------------GA-ARINEMFSI-ARRN-APAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRF 308 (704)
Q Consensus 247 ---------------g~-~~vr~lF~~-Ak~~-~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~ 308 (704)
+. ......|.. .... .+-++++||+|.|..++ ++.|..+......
T Consensus 223 F~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~-----------~~vLy~lFewp~l------ 285 (529)
T KOG2227|consen 223 FKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRS-----------QTVLYTLFEWPKL------ 285 (529)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcc-----------cceeeeehhcccC------
Confidence 11 112233332 2222 37899999999997442 2223333333221
Q ss_pred ccCccEEEEEEcCCCCCCcccccCC----CccceeeeeCCCCHHHHHHHHHHHhcCCCccccc--cHHHHHHhccCCCHH
Q 005285 309 SLRQAVIFICATNRPDELDLEFVRP----GRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDV--NFEELVFRTVGFSGA 382 (704)
Q Consensus 309 ~~~~~ViVIaaTN~p~~LD~aLlRp----gRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dv--dl~~La~~t~G~sga 382 (704)
....+++|+..|..|.-|..|-|- +--...+.|++++.++..+||+..+......... .++-.|+...|.||
T Consensus 286 -p~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG- 363 (529)
T KOG2227|consen 286 -PNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG- 363 (529)
T ss_pred -CcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-
Confidence 234589999999887655444321 1223588999999999999999988776654433 35677888888877
Q ss_pred HHHHH---HHHHHHHHHHh
Q 005285 383 DIRNL---VNESGIMSVRK 398 (704)
Q Consensus 383 dL~~L---v~eA~~~A~r~ 398 (704)
|++.+ |+.|..++...
T Consensus 364 DlRkaLdv~R~aiEI~E~e 382 (529)
T KOG2227|consen 364 DLRKALDVCRRAIEIAEIE 382 (529)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 56644 56565555544
No 231
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.55 E-value=3.3e-07 Score=95.87 Aligned_cols=98 Identities=17% Similarity=0.268 Sum_probs=63.6
Q ss_pred CccccceecCcc-cHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccccc
Q 005285 167 KSMYKEVVLGGD-VWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTD 242 (704)
Q Consensus 167 ~~~f~dVvG~~~-~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~~ 242 (704)
+.++.|+-+.+. .+..+..+..+.+.- ..+.+++|+||||||||+||-|+|+++ |..+.+++..++..
T Consensus 75 ~~~~~d~~~~~~~~~~~l~~~~~~~~~~--------~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~ 146 (254)
T COG1484 75 TFEEFDFEFQPGIDKKALEDLASLVEFF--------ERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLS 146 (254)
T ss_pred CcccccccCCcchhHHHHHHHHHHHHHh--------ccCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence 445555555543 344555554443222 146799999999999999999998875 89999999999887
Q ss_pred hhhhhHHH--HH-HHHHHHhhCCCeEEEEccchhh
Q 005285 243 SEKSGAAR--IN-EMFSIARRNAPAFVFVDEIDAI 274 (704)
Q Consensus 243 ~~~~g~~~--vr-~lF~~Ak~~~P~ILfIDEiDal 274 (704)
.....-.. .. .+.... ....+|+|||+-..
T Consensus 147 ~Lk~~~~~~~~~~~l~~~l--~~~dlLIiDDlG~~ 179 (254)
T COG1484 147 KLKAAFDEGRLEEKLLREL--KKVDLLIIDDIGYE 179 (254)
T ss_pred HHHHHHhcCchHHHHHHHh--hcCCEEEEecccCc
Confidence 64332221 11 111212 23469999999776
No 232
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.55 E-value=1.3e-06 Score=99.91 Aligned_cols=205 Identities=18% Similarity=0.246 Sum_probs=112.8
Q ss_pred ccCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEe-Ccccc
Q 005285 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFAS-GAEFT 241 (704)
Q Consensus 163 ~~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is-~s~~~ 241 (704)
++..+.+.+||+... +.+.++..|++.. + .+....+-+||+||||||||++++.+|+++|..+..-. ...+.
T Consensus 11 ~ky~P~~~~eLavhk---kKv~eV~~wl~~~--~--~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~ 83 (519)
T PF03215_consen 11 EKYAPKTLDELAVHK---KKVEEVRSWLEEM--F--SGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFR 83 (519)
T ss_pred hhcCCCCHHHhhccH---HHHHHHHHHHHHH--h--ccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCcc
Confidence 456778899998775 4455555555432 1 12234456789999999999999999999998777542 22211
Q ss_pred c----------hhhhh---HH---HHHHH-HHHHhh-----------CCCeEEEEccchhhhccCCCCChhHHHHHHHHH
Q 005285 242 D----------SEKSG---AA---RINEM-FSIARR-----------NAPAFVFVDEIDAIAGRHARKDPRRRATFEALI 293 (704)
Q Consensus 242 ~----------~~~~g---~~---~vr~l-F~~Ak~-----------~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL 293 (704)
. ..... .. .+..+ +..++. ..+.||+|||+-.++.+. ....-+.|.
T Consensus 84 ~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~------~~~f~~~L~ 157 (519)
T PF03215_consen 84 ESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD------TSRFREALR 157 (519)
T ss_pred ccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchh------HHHHHHHHH
Confidence 1 00000 01 11111 111221 246799999998775331 122222222
Q ss_pred HHhcCCcccCCccccccCc-cEEEEEE-c------CCCC--------CCcccccCCCccceeeeeCCCCHHHHHHHHHHH
Q 005285 294 AQLDGDKERTGIDRFSLRQ-AVIFICA-T------NRPD--------ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVH 357 (704)
Q Consensus 294 ~~ld~~~~~~~~~~~~~~~-~ViVIaa-T------N~p~--------~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~ 357 (704)
..+... .. ++|+|.+ + |... .+++.++...++ .+|.|.+-...-..+-|+..
T Consensus 158 ~~l~~~-----------~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI 225 (519)
T PF03215_consen 158 QYLRSS-----------RCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKRI 225 (519)
T ss_pred HHHHcC-----------CCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHHH
Confidence 223221 11 4677777 1 1111 345555543344 47888887665555544443
Q ss_pred hcCC--------Ccccccc-HHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 005285 358 SAGK--------QLAEDVN-FEELVFRTVGFSGADIRNLVNESGIMSV 396 (704)
Q Consensus 358 l~~~--------~l~~dvd-l~~La~~t~G~sgadL~~Lv~eA~~~A~ 396 (704)
+... ......+ ++.|+..+. +||+..++.-...+.
T Consensus 226 ~~~E~~~~~~~~~~p~~~~~l~~I~~~s~----GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 226 LKKEARSSSGKNKVPDKQSVLDSIAESSN----GDIRSAINNLQFWCL 269 (519)
T ss_pred HHHHhhhhcCCccCCChHHHHHHHHHhcC----chHHHHHHHHHHHhc
Confidence 3221 1122222 667776644 499999998887776
No 233
>PRK06921 hypothetical protein; Provisional
Probab=98.54 E-value=6.6e-07 Score=94.32 Aligned_cols=69 Identities=22% Similarity=0.310 Sum_probs=47.1
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc----CCCEEEEeCccccchhhhhHHHHHHHHHHHhhCCCeEEEEccchh
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES----GLPFVFASGAEFTDSEKSGAARINEMFSIARRNAPAFVFVDEIDA 273 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~----g~~~v~is~s~~~~~~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDa 273 (704)
...+++|+||||||||+|+.|+|+++ |..+++++..++..............++.. ....+|+|||++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFDLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHHHHHHHHHHHh--cCCCEEEEecccc
Confidence 35789999999999999999999875 678888887665443211111122222222 3457999999954
No 234
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.52 E-value=2.1e-07 Score=100.82 Aligned_cols=69 Identities=20% Similarity=0.427 Sum_probs=49.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccccchhhhh----HHHHHHHHHHHhhCCCeEEEEccchhh
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKSG----AARINEMFSIARRNAPAFVFVDEIDAI 274 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~~~~~~g----~~~vr~lF~~Ak~~~P~ILfIDEiDal 274 (704)
..+++|+||||||||+||.|+|+++ |..+++++..++....... .......++... ...+|+|||+...
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e 258 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTE 258 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCC
Confidence 3789999999999999999999986 7889999988876643211 111112233333 3469999999765
No 235
>PF13173 AAA_14: AAA domain
Probab=98.51 E-value=1e-06 Score=82.31 Aligned_cols=118 Identities=19% Similarity=0.292 Sum_probs=71.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcC--CCEEEEeCccccchhhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCC
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKESG--LPFVFASGAEFTDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKD 282 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e~g--~~~v~is~s~~~~~~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~ 282 (704)
+.++|+||.|+|||++++.+++... -.++++++.+.......... +...+.......+.+|||||++.+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~iDEiq~~~------- 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD-LLEYFLELIKPGKKYIFIDEIQYLP------- 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh-hHHHHHHhhccCCcEEEEehhhhhc-------
Confidence 4689999999999999999998876 78888888776553211111 2233332222356899999999883
Q ss_pred hhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCC----cccccCCCccceeeeeCCCCHHH
Q 005285 283 PRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDEL----DLEFVRPGRIDRRLYIGLPDAKQ 349 (704)
Q Consensus 283 ~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~L----D~aLlRpgRfd~~I~v~~Pd~~e 349 (704)
.....+..+...- . ++-+|+|+.....+ ...+ +||.. .+++.+.+..|
T Consensus 75 -~~~~~lk~l~d~~---~------------~~~ii~tgS~~~~l~~~~~~~l--~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 75 -DWEDALKFLVDNG---P------------NIKIILTGSSSSLLSKDIAESL--AGRVI-EIELYPLSFRE 126 (128)
T ss_pred -cHHHHHHHHHHhc---c------------CceEEEEccchHHHhhcccccC--CCeEE-EEEECCCCHHH
Confidence 1233344444321 0 13444444433332 2223 36874 67888877765
No 236
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.47 E-value=8.6e-07 Score=89.73 Aligned_cols=165 Identities=16% Similarity=0.248 Sum_probs=85.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCC---CEEEEeCccccch-------------------h-----------------
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESGL---PFVFASGAEFTDS-------------------E----------------- 244 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g~---~~v~is~s~~~~~-------------------~----------------- 244 (704)
...++|+||.|+|||+|++.+.....- ..+++........ .
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 567999999999999999999998732 2222222111100 0
Q ss_pred hhhHHHHHHHHHHHhhCC-CeEEEEccchhhh-ccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCC
Q 005285 245 KSGAARINEMFSIARRNA-PAFVFVDEIDAIA-GRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNR 322 (704)
Q Consensus 245 ~~g~~~vr~lF~~Ak~~~-P~ILfIDEiDal~-~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~ 322 (704)
......+..+++...+.. ..||+|||+|.+. .. . +....+..|...++....... ..+|+++++.
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~--~---~~~~~~~~l~~~~~~~~~~~~--------~~~v~~~S~~ 166 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIAS--E---EDKDFLKSLRSLLDSLLSQQN--------VSIVITGSSD 166 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCT--T---TTHHHHHHHHHHHHH----TT--------EEEEEEESSH
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcc--c---chHHHHHHHHHHHhhccccCC--------ceEEEECCch
Confidence 011223455566555433 4899999999996 21 1 223344455554444222111 1233444331
Q ss_pred C---C--CCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCC-Cc-cccccHHHHHHhccCCCHHHHH
Q 005285 323 P---D--ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGK-QL-AEDVNFEELVFRTVGFSGADIR 385 (704)
Q Consensus 323 p---~--~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~-~l-~~dvdl~~La~~t~G~sgadL~ 385 (704)
. + .-...+. +|+.. +.+++.+.++..++++..+... .+ .++.++..+...+.|. |+-|.
T Consensus 167 ~~~~~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~-P~~l~ 232 (234)
T PF01637_consen 167 SLMEEFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGN-PRYLQ 232 (234)
T ss_dssp HHHHHTT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT--HHHHH
T ss_pred HHHHHhhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCC-HHHHh
Confidence 0 1 1112233 47866 9999999999999999876554 11 2455678888887775 44443
No 237
>PRK09183 transposase/IS protein; Provisional
Probab=98.46 E-value=6.1e-07 Score=94.21 Aligned_cols=72 Identities=26% Similarity=0.429 Sum_probs=50.7
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHH---cCCCEEEEeCccccchhhhh--HHHHHHHHHHHhhCCCeEEEEccchhhh
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEFTDSEKSG--AARINEMFSIARRNAPAFVFVDEIDAIA 275 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e---~g~~~v~is~s~~~~~~~~g--~~~vr~lF~~Ak~~~P~ILfIDEiDal~ 275 (704)
...+++|+||||||||+||.+++.+ .|..+.++++.++....... ...+...|... ...+.+++|||++.+.
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~ 177 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLP 177 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCC
Confidence 3468999999999999999999765 47788888877766442111 11234445443 2456799999998763
No 238
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.45 E-value=3.3e-06 Score=87.24 Aligned_cols=176 Identities=15% Similarity=0.164 Sum_probs=116.1
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc-C--CCE--------
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-G--LPF-------- 232 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~-g--~~~-------- 232 (704)
+..+.+|+.+.+.++..+.|..+...-.-| ++|+|||+|+||-|.+.++-+++ | ++=
T Consensus 6 kyrpksl~~l~~~~e~~~~Lksl~~~~d~P------------Hll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~ 73 (351)
T KOG2035|consen 6 KYRPKSLDELIYHEELANLLKSLSSTGDFP------------HLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTF 73 (351)
T ss_pred hcCcchhhhcccHHHHHHHHHHhcccCCCC------------eEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEE
Confidence 345566777777777766666554421122 79999999999999999998875 2 221
Q ss_pred ------------------EEEeCccccchhhhhHHHHHHHHHHHhhCC---------CeEEEEccchhhhccCCCCChhH
Q 005285 233 ------------------VFASGAEFTDSEKSGAARINEMFSIARRNA---------PAFVFVDEIDAIAGRHARKDPRR 285 (704)
Q Consensus 233 ------------------v~is~s~~~~~~~~g~~~vr~lF~~Ak~~~---------P~ILfIDEiDal~~~~~~~~~e~ 285 (704)
+.++.|+.... ..-.+.++.++..+.. -.+++|.|.|.|..
T Consensus 74 ~tpS~kklEistvsS~yHlEitPSDaG~~---DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~--------- 141 (351)
T KOG2035|consen 74 TTPSKKKLEISTVSSNYHLEITPSDAGNY---DRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTR--------- 141 (351)
T ss_pred ecCCCceEEEEEecccceEEeChhhcCcc---cHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhH---------
Confidence 11222221111 1112445544433322 25899999999952
Q ss_pred HHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccc
Q 005285 286 RATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAE 365 (704)
Q Consensus 286 ~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~ 365 (704)
.....|-..|+...++ ..+|..+|....+=+++++ |+ ..|.+|.|+.++...++...+.+..+.-
T Consensus 142 -dAQ~aLRRTMEkYs~~-----------~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~l 206 (351)
T KOG2035|consen 142 -DAQHALRRTMEKYSSN-----------CRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQL 206 (351)
T ss_pred -HHHHHHHHHHHHHhcC-----------ceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccC
Confidence 2445666667665433 5788889999999899988 77 5799999999999999998887766653
Q ss_pred cc-cHHHHHHhccC
Q 005285 366 DV-NFEELVFRTVG 378 (704)
Q Consensus 366 dv-dl~~La~~t~G 378 (704)
.. -+.++|+.+.|
T Consensus 207 p~~~l~rIa~kS~~ 220 (351)
T KOG2035|consen 207 PKELLKRIAEKSNR 220 (351)
T ss_pred cHHHHHHHHHHhcc
Confidence 32 35667766554
No 239
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.45 E-value=2.4e-07 Score=91.89 Aligned_cols=70 Identities=26% Similarity=0.480 Sum_probs=47.7
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccccchhhhh--HHHHHHHHHHHhhCCCeEEEEccchhh
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKSG--AARINEMFSIARRNAPAFVFVDEIDAI 274 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~~~~~~g--~~~vr~lF~~Ak~~~P~ILfIDEiDal 274 (704)
...|++|+||||||||+||.|++.++ |.++.+++..++....... .......+.... .+.+|+|||+...
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~ 120 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYE 120 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEeccccccee
Confidence 35799999999999999999998764 8999999999887653211 112334444443 3468999999643
No 240
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.44 E-value=2.4e-06 Score=96.09 Aligned_cols=186 Identities=22% Similarity=0.239 Sum_probs=107.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccccchhhhhHHHHHHHHHH---------------HhhCCCeE
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKSGAARINEMFSI---------------ARRNAPAF 265 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~~~~~~g~~~vr~lF~~---------------Ak~~~P~I 265 (704)
...++++|.+||||+++|+++.... +.||+.++|..+..... -..+|.. .....+++
T Consensus 162 ~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~-----~~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 236 (441)
T PRK10365 162 EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLL-----ESELFGHEKGAFTGADKRREGRFVEADGGT 236 (441)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHH-----HHHhcCCCCCCcCCCCcCCCCceeECCCCE
Confidence 4679999999999999999997654 57999999998754311 0112211 11223578
Q ss_pred EEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccce-------
Q 005285 266 VFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDR------- 338 (704)
Q Consensus 266 LfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~------- 338 (704)
|||||||.+.. .....|+..++...............++.+|+||+.+- .....+|+|..
T Consensus 237 l~ldei~~l~~----------~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~---~~~~~~~~~~~~l~~~l~ 303 (441)
T PRK10365 237 LFLDEIGDISP----------MMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDL---AAEVNAGRFRQDLYYRLN 303 (441)
T ss_pred EEEeccccCCH----------HHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCH---HHHHHcCCchHHHHHHhc
Confidence 99999999953 24456666665432211111112233577888887632 12223455532
Q ss_pred eeeeCCCCHHHHHH----HHHHHhcC------CCc--cccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHH
Q 005285 339 RLYIGLPDAKQRVQ----IFDVHSAG------KQL--AEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQ 406 (704)
Q Consensus 339 ~I~v~~Pd~~eR~~----Il~~~l~~------~~l--~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~ 406 (704)
.+.+..|...+|.+ +++.++.. ... ..+..+..|....---+.++|.++++.|...+ ....|+.+
T Consensus 304 ~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~~---~~~~i~~~ 380 (441)
T PRK10365 304 VVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLL---TGEYISER 380 (441)
T ss_pred cceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHhC---CCCccchH
Confidence 56777777776643 33333321 110 11223455555543335678888888777653 33457777
Q ss_pred HHHH
Q 005285 407 DIVD 410 (704)
Q Consensus 407 dl~~ 410 (704)
++..
T Consensus 381 ~l~~ 384 (441)
T PRK10365 381 ELPL 384 (441)
T ss_pred hCch
Confidence 7643
No 241
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.36 E-value=6.2e-07 Score=84.90 Aligned_cols=59 Identities=36% Similarity=0.631 Sum_probs=43.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcC---CCEEEEeCccccchhhhhHHHHHHHHHHHhhCCCeEEEEccchhhh
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESG---LPFVFASGAEFTDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIA 275 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g---~~~v~is~s~~~~~~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~ 275 (704)
...|||+|+|||||+++|+++....+ .+|+.++|..+. .++++.+ .+..|||+|+|.+.
T Consensus 21 ~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~----------~~~l~~a---~~gtL~l~~i~~L~ 82 (138)
T PF14532_consen 21 SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP----------AELLEQA---KGGTLYLKNIDRLS 82 (138)
T ss_dssp SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC----------HHHHHHC---TTSEEEEECGCCS-
T ss_pred CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc----------HHHHHHc---CCCEEEECChHHCC
Confidence 46799999999999999999988764 366666666544 3455555 45689999999994
No 242
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.33 E-value=2.8e-06 Score=78.73 Aligned_cols=85 Identities=21% Similarity=0.350 Sum_probs=54.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc--------CCCEEEEeCccccchhh-----------------hhHHHHHHHHHHH
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKES--------GLPFVFASGAEFTDSEK-----------------SGAARINEMFSIA 258 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~--------g~~~v~is~s~~~~~~~-----------------~g~~~vr~lF~~A 258 (704)
.+.++++||||+|||++++.++... ..+++.+++........ ........+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4578999999999999999999977 78888888766442100 0111223333444
Q ss_pred hhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhc
Q 005285 259 RRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLD 297 (704)
Q Consensus 259 k~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld 297 (704)
......+|+|||+|.+. + ...++.|...++
T Consensus 84 ~~~~~~~lviDe~~~l~-~--------~~~l~~l~~l~~ 113 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF-S--------DEFLEFLRSLLN 113 (131)
T ss_dssp HHCTEEEEEEETTHHHH-T--------HHHHHHHHHHTC
T ss_pred HhcCCeEEEEeChHhcC-C--------HHHHHHHHHHHh
Confidence 44544699999999984 1 445666655555
No 243
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.31 E-value=5.5e-06 Score=87.63 Aligned_cols=142 Identities=20% Similarity=0.286 Sum_probs=77.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCC-C--EEEEeCccccchhhhhHHHHHHHHHHH-----------hhCCCeEEEEc
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESGL-P--FVFASGAEFTDSEKSGAARINEMFSIA-----------RRNAPAFVFVD 269 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g~-~--~v~is~s~~~~~~~~g~~~vr~lF~~A-----------k~~~P~ILfID 269 (704)
.+.+||+||+|||||++++..-.++.- . ...++++.... +..+..+.+.. .....+|+|||
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tt-----s~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiD 107 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTT-----SNQLQKIIESKLEKRRGRVYGPPGGKKLVLFID 107 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHH-----HHHHHHCCCTTECECTTEEEEEESSSEEEEEEE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCC-----HHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEec
Confidence 467999999999999999987765532 2 22344443221 12222221111 11234799999
Q ss_pred cchhhhccCCCCChhHHHHHHHHHHHhc---CCcccCCccccccCccEEEEEEcCCCC---CCcccccCCCccceeeeeC
Q 005285 270 EIDAIAGRHARKDPRRRATFEALIAQLD---GDKERTGIDRFSLRQAVIFICATNRPD---ELDLEFVRPGRIDRRLYIG 343 (704)
Q Consensus 270 EiDal~~~~~~~~~e~~~~ln~LL~~ld---~~~~~~~~~~~~~~~~ViVIaaTN~p~---~LD~aLlRpgRfd~~I~v~ 343 (704)
|+..-.... ...+...+||.++- |+...... .+..-.++.+|+|+|.+. .+++.++| .| ..+.++
T Consensus 108 DlN~p~~d~-----ygtq~~iElLRQ~i~~~g~yd~~~~-~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~~~~ 178 (272)
T PF12775_consen 108 DLNMPQPDK-----YGTQPPIELLRQLIDYGGFYDRKKL-EWKSIEDIQFVAAMNPTGGRNPISPRFLR--HF-NILNIP 178 (272)
T ss_dssp TTT-S---T-----TS--HHHHHHHHHHHCSEEECTTTT-EEEEECSEEEEEEESSTTT--SHHHHHHT--TE-EEEE--
T ss_pred ccCCCCCCC-----CCCcCHHHHHHHHHHhcCcccCCCc-EEEEEeeeEEEEecCCCCCCCCCChHHhh--he-EEEEec
Confidence 998653222 12222334444432 22222111 133345688899987533 47777877 66 589999
Q ss_pred CCCHHHHHHHHHHHhc
Q 005285 344 LPDAKQRVQIFDVHSA 359 (704)
Q Consensus 344 ~Pd~~eR~~Il~~~l~ 359 (704)
.|+.+....|+...+.
T Consensus 179 ~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 179 YPSDESLNTIFSSILQ 194 (272)
T ss_dssp --TCCHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHh
Confidence 9999999888776543
No 244
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.23 E-value=4.2e-05 Score=85.67 Aligned_cols=205 Identities=20% Similarity=0.244 Sum_probs=109.3
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhCCchhhhhcC-CccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeC-ccc-
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERG-VQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASG-AEF- 240 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g-~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~-s~~- 240 (704)
+..+.+.++|+... +.+.++-.||+. +.... .-..+-+||+||+|||||+.++.+|.++|+.+..-+. -.+
T Consensus 75 Ky~P~t~eeLAVHk---kKI~eVk~WL~~---~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~ 148 (634)
T KOG1970|consen 75 KYKPRTLEELAVHK---KKISEVKQWLKQ---VAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLK 148 (634)
T ss_pred hcCcccHHHHhhhH---HhHHHHHHHHHH---HHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCcccc
Confidence 45566777776543 445555555551 11100 1234567899999999999999999999998875541 111
Q ss_pred -cch-----------hhhhHHHHHHHHHHHh------------hCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHh
Q 005285 241 -TDS-----------EKSGAARINEMFSIAR------------RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQL 296 (704)
Q Consensus 241 -~~~-----------~~~g~~~vr~lF~~Ak------------~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~l 296 (704)
.+. +......+......+. ...|.+|+|||+-..+.+ + ....+..+|..+
T Consensus 149 ~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~----d--~~~~f~evL~~y 222 (634)
T KOG1970|consen 149 EPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYR----D--DSETFREVLRLY 222 (634)
T ss_pred ccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhh----h--hHHHHHHHHHHH
Confidence 111 1111111222222221 123679999999887643 1 223344444433
Q ss_pred cCCcccCCccccccCccEEEEEE-cCCCCCCcccccCC------CccceeeeeCCCCHHHHHHHHHHHhcCC--C-----
Q 005285 297 DGDKERTGIDRFSLRQAVIFICA-TNRPDELDLEFVRP------GRIDRRLYIGLPDAKQRVQIFDVHSAGK--Q----- 362 (704)
Q Consensus 297 d~~~~~~~~~~~~~~~~ViVIaa-TN~p~~LD~aLlRp------gRfd~~I~v~~Pd~~eR~~Il~~~l~~~--~----- 362 (704)
-... ..++|++.| ++.++..++-.+.| .|++ .|.|.+-...-..+.|+..+... +
T Consensus 223 ~s~g----------~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~-~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k 291 (634)
T KOG1970|consen 223 VSIG----------RCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRIS-NISFNPIAPTIMKKFLKRICRIEANKKSGIK 291 (634)
T ss_pred HhcC----------CCcEEEEEeccccCCCcchhhhchhhhhhccCcc-eEeecCCcHHHHHHHHHHHHHHhcccccCCc
Confidence 2211 122444444 23334443333222 2443 67787766666666666544321 1
Q ss_pred ccccccHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 005285 363 LAEDVNFEELVFRTVGFSGADIRNLVNESGIMS 395 (704)
Q Consensus 363 l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A 395 (704)
......++.++.. +++||+..++...+.+
T Consensus 292 ~~~~~~v~~i~~~----s~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 292 VPDTAEVELICQG----SGGDIRSAINSLQLSS 320 (634)
T ss_pred CchhHHHHHHHHh----cCccHHHHHhHhhhhc
Confidence 1223345555554 3559999999888776
No 245
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.23 E-value=1.2e-05 Score=76.39 Aligned_cols=70 Identities=24% Similarity=0.380 Sum_probs=48.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccccchhh-------------------------hhHHHHHHHHHHH
Q 005285 207 VLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEK-------------------------SGAARINEMFSIA 258 (704)
Q Consensus 207 vLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~~~~~-------------------------~g~~~vr~lF~~A 258 (704)
++|+||||+|||+++..++..+ +.++++++......... ......+.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998876 67788877654332100 0011112234556
Q ss_pred hhCCCeEEEEccchhhhc
Q 005285 259 RRNAPAFVFVDEIDAIAG 276 (704)
Q Consensus 259 k~~~P~ILfIDEiDal~~ 276 (704)
....|.+|+|||+..+..
T Consensus 82 ~~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 82 ERGGDDLIILDELTRLVR 99 (165)
T ss_pred hCCCCEEEEEEcHHHHHH
Confidence 667789999999999864
No 246
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.20 E-value=1.3e-05 Score=82.78 Aligned_cols=135 Identities=21% Similarity=0.256 Sum_probs=77.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccchhhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCCh
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDP 283 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~ 283 (704)
..|..++||+|||||.++|++|..+|.+++..+|++-.+.. .+..+|.-+... .+-+++||++.+- .
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~-----~l~ril~G~~~~-GaW~cfdefnrl~-------~ 98 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQ-----SLSRILKGLAQS-GAWLCFDEFNRLS-------E 98 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HH-----HHHHHHHHHHHH-T-EEEEETCCCSS-------H
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHH-----HHHHHHHHHhhc-Cchhhhhhhhhhh-------H
Confidence 35778999999999999999999999999999999976542 255555544443 3789999999883 2
Q ss_pred hHHHHHHHHHHH----hcCCcccC--CccccccCccEEEEEEcCC----CCCCcccccCCCccceeeeeCCCCHHHHHHH
Q 005285 284 RRRATFEALIAQ----LDGDKERT--GIDRFSLRQAVIFICATNR----PDELDLEFVRPGRIDRRLYIGLPDAKQRVQI 353 (704)
Q Consensus 284 e~~~~ln~LL~~----ld~~~~~~--~~~~~~~~~~ViVIaaTN~----p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~I 353 (704)
+.-..+.+.+.. +......- .........+.-++.|.|. ...||+.|+. -| |-+.+-.||.....++
T Consensus 99 ~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~--lF-Rpvam~~PD~~~I~ei 175 (231)
T PF12774_consen 99 EVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA--LF-RPVAMMVPDLSLIAEI 175 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT--TE-EEEE--S--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH--Hh-heeEEeCCCHHHHHHH
Confidence 222333333332 22211110 0111222234455566663 3468888876 45 8899999998886665
Q ss_pred H
Q 005285 354 F 354 (704)
Q Consensus 354 l 354 (704)
+
T Consensus 176 ~ 176 (231)
T PF12774_consen 176 L 176 (231)
T ss_dssp H
T ss_pred H
Confidence 4
No 247
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.16 E-value=6.9e-06 Score=90.15 Aligned_cols=140 Identities=17% Similarity=0.258 Sum_probs=82.6
Q ss_pred CccCceEEEEcCCCChHHHHHHHHHHHcCC-CEEEEeCccccchhhhhHHH-------HHHHHHHHhhCCCeEEEEccch
Q 005285 201 VQFVRGVLLSGPPGTGKTLFARTLAKESGL-PFVFASGAEFTDSEKSGAAR-------INEMFSIARRNAPAFVFVDEID 272 (704)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAraiA~e~g~-~~v~is~s~~~~~~~~g~~~-------vr~lF~~Ak~~~P~ILfIDEiD 272 (704)
...|+|++||||+|+|||+|.-.+...+.. .--.+...+|+......... +..+-+... ....+|+|||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~-~~~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELA-KESRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHH-hcCCEEEEeeee
Confidence 457999999999999999999999887654 21222333444332111111 222222222 223599999997
Q ss_pred hhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCC-CCCCcccccCCCccceeeeeCCCCHHHHH
Q 005285 273 AIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNR-PDELDLEFVRPGRIDRRLYIGLPDAKQRV 351 (704)
Q Consensus 273 al~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~-p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~ 351 (704)
-- +-.....+..|+..+-. .+|++|+|+|+ |+.|-+ +.+.+....| -.
T Consensus 138 V~-------DiaDAmil~rLf~~l~~-------------~gvvlVaTSN~~P~~Ly~-----~gl~r~~Flp------~I 186 (362)
T PF03969_consen 138 VT-------DIADAMILKRLFEALFK-------------RGVVLVATSNRPPEDLYK-----NGLQRERFLP------FI 186 (362)
T ss_pred cc-------chhHHHHHHHHHHHHHH-------------CCCEEEecCCCChHHHcC-----CcccHHHHHH------HH
Confidence 42 22334567778777643 24899999998 344432 2332222111 35
Q ss_pred HHHHHHhcCCCccccccHHHH
Q 005285 352 QIFDVHSAGKQLAEDVNFEEL 372 (704)
Q Consensus 352 ~Il~~~l~~~~l~~dvdl~~L 372 (704)
++|+.++.-..+....|....
T Consensus 187 ~~l~~~~~vv~ld~~~DyR~~ 207 (362)
T PF03969_consen 187 DLLKRRCDVVELDGGVDYRRR 207 (362)
T ss_pred HHHHhceEEEEecCCCchhhh
Confidence 567777776677777777653
No 248
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.12 E-value=3.7e-05 Score=81.62 Aligned_cols=118 Identities=14% Similarity=0.087 Sum_probs=82.1
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCCC----------------EEEEeCccccchhhhhHHHHHHHHHHHhh----C
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLP----------------FVFASGAEFTDSEKSGAARINEMFSIARR----N 261 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~g~~----------------~v~is~s~~~~~~~~g~~~vr~lF~~Ak~----~ 261 (704)
+.|...||+||+|+||+.+|.++|..+-+. +..+.... .. ..-+...+|.+-+.+.. .
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~-~~-~~I~idqiR~l~~~~~~~p~e~ 94 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQG-KG-RLHSIETPRAIKKQIWIHPYES 94 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCC-CC-CcCcHHHHHHHHHHHhhCccCC
Confidence 578899999999999999999999876331 11121100 00 00134456666555433 2
Q ss_pred CCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeee
Q 005285 262 APAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLY 341 (704)
Q Consensus 262 ~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~ 341 (704)
...|++||++|.+. ....|.||+.|+.-. .++++|..|+.++.|.|.+++ |+ ..+.
T Consensus 95 ~~kv~ii~~ad~mt----------~~AaNaLLK~LEEPp-----------~~~~fiL~~~~~~~ll~TI~S--Rc-q~~~ 150 (290)
T PRK05917 95 PYKIYIIHEADRMT----------LDAISAFLKVLEDPP-----------QHGVIILTSAKPQRLPPTIRS--RS-LSIH 150 (290)
T ss_pred CceEEEEechhhcC----------HHHHHHHHHHhhcCC-----------CCeEEEEEeCChhhCcHHHHh--cc-eEEE
Confidence 34699999999994 346799999998744 347888888999999999998 88 4566
Q ss_pred eCCC
Q 005285 342 IGLP 345 (704)
Q Consensus 342 v~~P 345 (704)
|+++
T Consensus 151 ~~~~ 154 (290)
T PRK05917 151 IPME 154 (290)
T ss_pred ccch
Confidence 7654
No 249
>PF05729 NACHT: NACHT domain
Probab=98.11 E-value=2.4e-05 Score=74.92 Aligned_cols=139 Identities=22% Similarity=0.298 Sum_probs=73.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHc------C--CC-EEEEeCccccchhh--hhH-----------HHHHH-HHHHHhhC
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKES------G--LP-FVFASGAEFTDSEK--SGA-----------ARINE-MFSIARRN 261 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e~------g--~~-~v~is~s~~~~~~~--~g~-----------~~vr~-lF~~Ak~~ 261 (704)
|-++|+|+||+|||++++.++..+ + .+ ++++++.++..... .-. ..... ....+...
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 358999999999999999998754 1 12 33455444433210 000 01111 12233455
Q ss_pred CCeEEEEccchhhhccCCC-CChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCC--CCcccccCCCccce
Q 005285 262 APAFVFVDEIDAIAGRHAR-KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPD--ELDLEFVRPGRIDR 338 (704)
Q Consensus 262 ~P~ILfIDEiDal~~~~~~-~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~--~LD~aLlRpgRfd~ 338 (704)
.+.+|+||.+|.+...... ........+.+++.. . .. .++-++.|+.... .+...+.. . .
T Consensus 81 ~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~-~-~~-----------~~~~liit~r~~~~~~~~~~~~~---~-~ 143 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQ-A-LP-----------PGVKLIITSRPRAFPDLRRRLKQ---A-Q 143 (166)
T ss_pred CceEEEEechHhcccchhhhHHHHHHHHHHHHhhh-c-cC-----------CCCeEEEEEcCChHHHHHHhcCC---C-c
Confidence 6789999999999642111 001111223333322 0 01 1134444443221 12222222 1 4
Q ss_pred eeeeCCCCHHHHHHHHHHHhcC
Q 005285 339 RLYIGLPDAKQRVQIFDVHSAG 360 (704)
Q Consensus 339 ~I~v~~Pd~~eR~~Il~~~l~~ 360 (704)
.+.++..+.+++.++++.+++.
T Consensus 144 ~~~l~~~~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 144 ILELEPFSEEDIKQYLRKYFSN 165 (166)
T ss_pred EEEECCCCHHHHHHHHHHHhhc
Confidence 6889999999999999987653
No 250
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.11 E-value=1.9e-05 Score=79.74 Aligned_cols=77 Identities=26% Similarity=0.352 Sum_probs=53.4
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHH---cCCCEEEEeCccccch-hhhh-----------------------HHHHH
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEFTDS-EKSG-----------------------AARIN 252 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e---~g~~~v~is~s~~~~~-~~~g-----------------------~~~vr 252 (704)
|++...-++++||||+|||+++..++.+ .|..+++++..++... .... ...+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 5666677899999999999999998754 4778999998763211 1100 11133
Q ss_pred HHHHHHhhCCCeEEEEccchhhhc
Q 005285 253 EMFSIARRNAPAFVFVDEIDAIAG 276 (704)
Q Consensus 253 ~lF~~Ak~~~P~ILfIDEiDal~~ 276 (704)
.+...+.+..|++|+||-+.++..
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhH
Confidence 344445556789999999999863
No 251
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.06 E-value=2.1e-05 Score=83.78 Aligned_cols=176 Identities=22% Similarity=0.290 Sum_probs=102.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHH---cCCCEEEEeCccccchhhh--------hHHHHHHHHHHHhhCCCeEEEEccchhh
Q 005285 206 GVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEFTDSEKS--------GAARINEMFSIARRNAPAFVFVDEIDAI 274 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e---~g~~~v~is~s~~~~~~~~--------g~~~vr~lF~~Ak~~~P~ILfIDEiDal 274 (704)
.+|+.|..||||-++||+.-.. ...||+.+||..+.+.... |..--..+|++|... -+|+|||..+
T Consensus 229 PLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElFG~apg~~gk~GffE~AngG---TVlLDeIgEm 305 (511)
T COG3283 229 PLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELFGHAPGDEGKKGFFEQANGG---TVLLDEIGEM 305 (511)
T ss_pred CeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHHhcCCCCCCCccchhhhccCC---eEEeehhhhc
Confidence 4999999999999999998553 4689999999998764322 122345677777544 6999999887
Q ss_pred hccCCCCChhHHHHHHHHHHHhcC-CcccCCccccccCccEEEEEEcCCC--CCCcccccCCCccce--eeeeCCCCHHH
Q 005285 275 AGRHARKDPRRRATFEALIAQLDG-DKERTGIDRFSLRQAVIFICATNRP--DELDLEFVRPGRIDR--RLYIGLPDAKQ 349 (704)
Q Consensus 275 ~~~~~~~~~e~~~~ln~LL~~ld~-~~~~~~~~~~~~~~~ViVIaaTN~p--~~LD~aLlRpgRfd~--~I~v~~Pd~~e 349 (704)
..+ ....||..+.. ...+-|.+ ....-+|.||+||..+ +.....-.|..-|.| ++.+..|...+
T Consensus 306 Sp~----------lQaKLLRFL~DGtFRRVGee-~Ev~vdVRVIcatq~nL~~lv~~g~fReDLfyRLNVLtl~~PpLRe 374 (511)
T COG3283 306 SPR----------LQAKLLRFLNDGTFRRVGED-HEVHVDVRVICATQVNLVELVQKGKFREDLFYRLNVLTLNLPPLRE 374 (511)
T ss_pred CHH----------HHHHHHHHhcCCceeecCCc-ceEEEEEEEEecccccHHHHHhcCchHHHHHHHhheeeecCCcccc
Confidence 432 34556665543 33332222 2233469999999653 333333333222222 66677777766
Q ss_pred HHH--------HHHHHhcCCCcc-cccc---HHHHHHhccCCCHHHHHHHHHHHHHHH
Q 005285 350 RVQ--------IFDVHSAGKQLA-EDVN---FEELVFRTVGFSGADIRNLVNESGIMS 395 (704)
Q Consensus 350 R~~--------Il~~~l~~~~l~-~dvd---l~~La~~t~G~sgadL~~Lv~eA~~~A 395 (704)
|.+ .++.++...... +..+ +..|.+..---+-++|.|.+-.|+...
T Consensus 375 r~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~WpGNVRqL~N~iyRA~s~~ 432 (511)
T COG3283 375 RPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAWPGNVRQLKNAIYRALTLL 432 (511)
T ss_pred CcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcCCCccHHHHHHHHHHHHHHh
Confidence 633 222333322221 1111 334443332224577888777776554
No 252
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.06 E-value=1.2e-05 Score=93.56 Aligned_cols=129 Identities=20% Similarity=0.237 Sum_probs=75.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCEEE-EeCccccchhhhhHHHHHHHH--HHHh------hCCCeEEEEccchhh
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVF-ASGAEFTDSEKSGAARINEMF--SIAR------RNAPAFVFVDEIDAI 274 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~-is~s~~~~~~~~g~~~vr~lF--~~Ak------~~~P~ILfIDEiDal 274 (704)
.-+|||.|-||||||.|.|.+++-+...++. ..++.- .|.++..+++-+ ++.. ...+.|.+|||+|.+
T Consensus 319 DInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~---~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm 395 (682)
T COG1241 319 DIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSA---AGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKM 395 (682)
T ss_pred ceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccc---cCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCC
Confidence 3579999999999999999999877554432 111111 111222222211 1111 123579999999988
Q ss_pred hccCCCCChhHHHHHHHHHHHhcCCcccC---CccccccCccEEEEEEcCCCC-------------CCcccccCCCccce
Q 005285 275 AGRHARKDPRRRATFEALIAQLDGDKERT---GIDRFSLRQAVIFICATNRPD-------------ELDLEFVRPGRIDR 338 (704)
Q Consensus 275 ~~~~~~~~~e~~~~ln~LL~~ld~~~~~~---~~~~~~~~~~ViVIaaTN~p~-------------~LD~aLlRpgRfd~ 338 (704)
- +...+.+.+.|+....+- |+.. ..+...-|+||+|... .|+++|++ |||.
T Consensus 396 ~----------~~dr~aihEaMEQQtIsIaKAGI~a-tLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDL 462 (682)
T COG1241 396 N----------EEDRVAIHEAMEQQTISIAKAGITA-TLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDL 462 (682)
T ss_pred C----------hHHHHHHHHHHHhcEeeecccceee-ecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCe
Confidence 3 123466777776543221 1111 1112245788888754 47889999 9998
Q ss_pred eeee-CCCCHH
Q 005285 339 RLYI-GLPDAK 348 (704)
Q Consensus 339 ~I~v-~~Pd~~ 348 (704)
.+.+ +.|+.+
T Consensus 463 ifvl~D~~d~~ 473 (682)
T COG1241 463 IFVLKDDPDEE 473 (682)
T ss_pred eEEecCCCCcc
Confidence 5554 556654
No 253
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.04 E-value=0.00016 Score=76.95 Aligned_cols=127 Identities=12% Similarity=0.113 Sum_probs=85.1
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCCC-------EE---------EEeCccccc--hhh--hhHHHHHHHHHHHhh-
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLP-------FV---------FASGAEFTD--SEK--SGAARINEMFSIARR- 260 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~g~~-------~v---------~is~s~~~~--~~~--~g~~~vr~lF~~Ak~- 260 (704)
+.+..+||+|| +||+++|+++|..+-.. .- .-+-.|+.. ..+ .+...+|.+-..+..
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 67889999996 68999999999865221 00 000111111 111 123456666554432
Q ss_pred ---CCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccc
Q 005285 261 ---NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRID 337 (704)
Q Consensus 261 ---~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd 337 (704)
....|++||++|.+. ....|.||+.++.-.. ++++|.+|+.++.|-|.+++ |+
T Consensus 100 p~~~~~kV~II~~ad~m~----------~~AaNaLLKtLEEPp~-----------~t~~iL~t~~~~~lLpTI~S--Rc- 155 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMH----------VNAANSLLKVIEEPQS-----------EIYIFLLTNDENKVLPTIKS--RT- 155 (290)
T ss_pred cccCCcEEEEeehhhhcC----------HHHHHHHHHHhcCCCC-----------CeEEEEEECChhhCchHHHH--cc-
Confidence 234799999999994 3468999999987443 36888888889999999999 88
Q ss_pred eeeeeCCCCHHHHHHHHH
Q 005285 338 RRLYIGLPDAKQRVQIFD 355 (704)
Q Consensus 338 ~~I~v~~Pd~~eR~~Il~ 355 (704)
..|.|+. +.+...+++.
T Consensus 156 q~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 156 QIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred eeeeCCC-cHHHHHHHHH
Confidence 6788866 5566556654
No 254
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.03 E-value=4.4e-05 Score=75.29 Aligned_cols=89 Identities=24% Similarity=0.287 Sum_probs=55.4
Q ss_pred EEEEcCCCChHHHHHHHHHHH---cCCCEEEEeCccccchh-------hh-----------------------hH-----
Q 005285 207 VLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEFTDSE-------KS-----------------------GA----- 248 (704)
Q Consensus 207 vLL~GPPGTGKT~LAraiA~e---~g~~~v~is~s~~~~~~-------~~-----------------------g~----- 248 (704)
+|++||||||||+++..++.+ .|.++++++..+-.+.. +. +.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 789999999999999988664 47788888865432210 00 00
Q ss_pred HHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcC
Q 005285 249 ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDG 298 (704)
Q Consensus 249 ~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~ 298 (704)
..+..+...+....|.+|+||++.++... ........+..++..+..
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~~---~~~~~~~~i~~l~~~l~~ 128 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLLM---EQSTARLEIRRLLFALKR 128 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhhc---ChHHHHHHHHHHHHHHHH
Confidence 01233444555677999999999988642 112233344556655543
No 255
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.02 E-value=0.00022 Score=73.46 Aligned_cols=182 Identities=19% Similarity=0.233 Sum_probs=112.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCC---CEEEEeCccccc-----h-h------------hhhHHHHHHHHHHHhh-CCC
Q 005285 206 GVLLSGPPGTGKTLFARTLAKESGL---PFVFASGAEFTD-----S-E------------KSGAARINEMFSIARR-NAP 263 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~g~---~~v~is~s~~~~-----~-~------------~~g~~~vr~lF~~Ak~-~~P 263 (704)
-+.++|+-|||||+++||+...++- -.++++...+.. . . ......-+.+....++ ..|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 3578899999999999988776542 233444332221 1 0 0112223344444444 456
Q ss_pred eEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCC------Cccc
Q 005285 264 AFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRP------GRID 337 (704)
Q Consensus 264 ~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRp------gRfd 337 (704)
.++++||.+.+... ....+ .++..++... +..-.|+.|+=. .|.+-+++| -|++
T Consensus 133 v~l~vdEah~L~~~-------~le~L-rll~nl~~~~--------~~~l~ivL~Gqp----~L~~~lr~~~l~e~~~R~~ 192 (269)
T COG3267 133 VVLMVDEAHDLNDS-------ALEAL-RLLTNLEEDS--------SKLLSIVLIGQP----KLRPRLRLPVLRELEQRID 192 (269)
T ss_pred eEEeehhHhhhChh-------HHHHH-HHHHhhcccc--------cCceeeeecCCc----ccchhhchHHHHhhhheEE
Confidence 89999999998532 11122 2222222211 112335666543 233322222 2887
Q ss_pred eeeeeCCCCHHHHHHHHHHHhcCC----CccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHH
Q 005285 338 RRLYIGLPDAKQRVQIFDVHSAGK----QLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDI 408 (704)
Q Consensus 338 ~~I~v~~Pd~~eR~~Il~~~l~~~----~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl 408 (704)
..|++++.+.++....++.++.+- ++..+-.+..+...+.| .|.-|.++|..|...|...|...|+...+
T Consensus 193 ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~~v~~a~~ 266 (269)
T COG3267 193 IRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGEDGVSEAEI 266 (269)
T ss_pred EEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCCccchhhc
Confidence 778999999999999999888654 33344456777888888 58889999999999998888888887654
No 256
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.02 E-value=6.2e-05 Score=79.44 Aligned_cols=171 Identities=14% Similarity=0.171 Sum_probs=91.5
Q ss_pred HHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHH--cCCC---EEEEeCccccc----------hhh
Q 005285 181 DLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKE--SGLP---FVFASGAEFTD----------SEK 245 (704)
Q Consensus 181 ~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e--~g~~---~v~is~s~~~~----------~~~ 245 (704)
.+++++.+.|.... ...+-|.|+|++|+|||+||+.+++. ..-. ++.++.+.-.. ..+
T Consensus 3 ~~~~~l~~~L~~~~-------~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 3 KEIEKLKDWLLDNS-------NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLG 75 (287)
T ss_dssp HHHHHHHHHHHTTT-------TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhCCC-------CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccc
Confidence 45677777776641 35677899999999999999999976 3222 23333332110 000
Q ss_pred ----------hhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEE
Q 005285 246 ----------SGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVI 315 (704)
Q Consensus 246 ----------~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~Vi 315 (704)
......+.+.+.. ...+++|+||+++... .+..+...+... ..+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L-~~~~~LlVlDdv~~~~------------~~~~l~~~~~~~-----------~~~~k 131 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELL-KDKRCLLVLDDVWDEE------------DLEELREPLPSF-----------SSGSK 131 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHH-CCTSEEEEEEEE-SHH------------HH-------HCH-----------HSS-E
T ss_pred ccccccccccccccccccchhhh-ccccceeeeeeecccc------------cccccccccccc-----------ccccc
Confidence 0111223333333 3448999999998552 222222222111 11246
Q ss_pred EEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCC----ccccccHHHHHHhccCCCHHHHHHH
Q 005285 316 FICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQ----LAEDVNFEELVFRTVGFSGADIRNL 387 (704)
Q Consensus 316 VIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~----l~~dvdl~~La~~t~G~sgadL~~L 387 (704)
||.||....... .+. .-+..++++..+.++-.++|........ -..+.....++..+.|. |-.|.-+
T Consensus 132 ilvTTR~~~v~~-~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLal~~~ 202 (287)
T PF00931_consen 132 ILVTTRDRSVAG-SLG---GTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGL-PLALKLI 202 (287)
T ss_dssp EEEEESCGGGGT-THH---SCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred cccccccccccc-ccc---ccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 677776543221 111 1146899999999999999998865433 11122356788887764 5545544
No 257
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.98 E-value=1.4e-05 Score=86.99 Aligned_cols=196 Identities=17% Similarity=0.246 Sum_probs=104.6
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccc-----hh----hhhHHHHH-HHHHHHhhCCCeEEEEccch
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD-----SE----KSGAARIN-EMFSIARRNAPAFVFVDEID 272 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~-----~~----~~g~~~vr-~lF~~Ak~~~P~ILfIDEiD 272 (704)
..-+|||.|.||||||.|.+.++.-+... +++++..... .. ..+...+. ..+-.| ...|++|||+|
T Consensus 56 ~~ihiLlvGdpg~gKS~ll~~~~~~~pr~-v~~~g~~~s~~gLta~~~~d~~~~~~~leaGalvla---d~GiccIDe~d 131 (331)
T PF00493_consen 56 GNIHILLVGDPGTGKSQLLKYVAKLAPRS-VYTSGKGSSAAGLTASVSRDPVTGEWVLEAGALVLA---DGGICCIDEFD 131 (331)
T ss_dssp -S--EEEECSCHHCHHHHHHCCCCT-SSE-EEEECCGSTCCCCCEEECCCGGTSSECEEE-HHHHC---TTSEEEECTTT
T ss_pred cccceeeccchhhhHHHHHHHHHhhCCce-EEECCCCcccCCccceeccccccceeEEeCCchhcc---cCceeeecccc
Confidence 34579999999999999999887554333 3444333111 10 00100001 112222 23699999999
Q ss_pred hhhccCCCCChhHHHHHHHHHHHhcCCcccCC--ccccccCccEEEEEEcCCCC-------------CCcccccCCCccc
Q 005285 273 AIAGRHARKDPRRRATFEALIAQLDGDKERTG--IDRFSLRQAVIFICATNRPD-------------ELDLEFVRPGRID 337 (704)
Q Consensus 273 al~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~--~~~~~~~~~ViVIaaTN~p~-------------~LD~aLlRpgRfd 337 (704)
.+-. .....|++.|+.....-. +-....+...-|+||+|... .+++.|++ |||
T Consensus 132 k~~~----------~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFD 199 (331)
T PF00493_consen 132 KMKE----------DDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFD 199 (331)
T ss_dssp T--C----------HHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-S
T ss_pred cccc----------hHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcC
Confidence 8842 235677777776432211 01122233467899988755 47889998 999
Q ss_pred eeeee-CCCCHHHHHHHHHHHhcCCC----------------ccccc--cHHHHHH------------------------
Q 005285 338 RRLYI-GLPDAKQRVQIFDVHSAGKQ----------------LAEDV--NFEELVF------------------------ 374 (704)
Q Consensus 338 ~~I~v-~~Pd~~eR~~Il~~~l~~~~----------------l~~dv--dl~~La~------------------------ 374 (704)
..+.+ +.|+.+.-..|.+..+.... +..+. .+-..++
T Consensus 200 Lif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~ 279 (331)
T PF00493_consen 200 LIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRK 279 (331)
T ss_dssp EEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCH
T ss_pred EEEEeccccccccccccceEEEeccccccccccccccccCCccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhcc
Confidence 87664 67776655555543332211 11100 0111111
Q ss_pred ------hccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Q 005285 375 ------RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414 (704)
Q Consensus 375 ------~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al~~ 414 (704)
.....|.+.|+.+++-|-..|.-+.+..|+.+|+..|++=
T Consensus 280 ~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~Ai~L 325 (331)
T PF00493_consen 280 ESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEEAIRL 325 (331)
T ss_dssp CHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHHHHHH
Confidence 0123566778889998888888888899999999998863
No 258
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.95 E-value=0.00026 Score=73.90 Aligned_cols=120 Identities=9% Similarity=0.032 Sum_probs=80.3
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCc--------------cccc--hh--hhhHHHHHHHHHHHh----
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGA--------------EFTD--SE--KSGAARINEMFSIAR---- 259 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s--------------~~~~--~~--~~g~~~vr~lF~~Ak---- 259 (704)
.+|..+||+||+|+||..+|.++|..+-+.=-.-.|. |+.- .. .-+...+|++-+...
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 4688999999999999999999998642110000111 1110 00 122334555544322
Q ss_pred h-CCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccce
Q 005285 260 R-NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDR 338 (704)
Q Consensus 260 ~-~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~ 338 (704)
. ....|++|+++|.+. ....|.||..++.-. .++++|..|+.++.+.|.+++ |+.
T Consensus 85 e~~~~KV~II~~ae~m~----------~~AaNaLLK~LEEPp-----------~~t~fiLit~~~~~lLpTI~S--RCq- 140 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLN----------KQSANSLLKLIEEPP-----------KNTYGIFTTRNENNILNTILS--RCV- 140 (261)
T ss_pred hcCCCEEEEeccHhhhC----------HHHHHHHHHhhcCCC-----------CCeEEEEEECChHhCchHhhh--hee-
Confidence 1 235799999999994 347899999998744 347889999999999999999 874
Q ss_pred eeeeCCC
Q 005285 339 RLYIGLP 345 (704)
Q Consensus 339 ~I~v~~P 345 (704)
.+.++.+
T Consensus 141 ~~~~~~~ 147 (261)
T PRK05818 141 QYVVLSK 147 (261)
T ss_pred eeecCCh
Confidence 4667666
No 259
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.94 E-value=7.2e-05 Score=94.17 Aligned_cols=176 Identities=22% Similarity=0.263 Sum_probs=98.7
Q ss_pred CCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCE---EEEeCc----
Q 005285 166 TKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPF---VFASGA---- 238 (704)
Q Consensus 166 ~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~---v~is~s---- 238 (704)
+...|++++|.++..+.+..++.. +....+-|-|+||+|+||||||+++++....+| +.++..
T Consensus 179 ~~~~~~~~vG~~~~l~~l~~lL~l----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~ 248 (1153)
T PLN03210 179 PSNDFEDFVGIEDHIAKMSSLLHL----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISK 248 (1153)
T ss_pred cCcccccccchHHHHHHHHHHHcc----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecccccc
Confidence 456789999988766666555431 123456789999999999999999988764432 122110
Q ss_pred ---cccc--------hhhhhHHHHHH-------------HHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHH
Q 005285 239 ---EFTD--------SEKSGAARINE-------------MFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIA 294 (704)
Q Consensus 239 ---~~~~--------~~~~g~~~vr~-------------lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~ 294 (704)
.+.. ........+.. ..+..-...+.+|+||++|.. ..+..+..
T Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~------------~~l~~L~~ 316 (1153)
T PLN03210 249 SMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ------------DVLDALAG 316 (1153)
T ss_pred chhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH------------HHHHHHHh
Confidence 0000 00000000111 111222355789999998743 12333333
Q ss_pred HhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccccH----H
Q 005285 295 QLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNF----E 370 (704)
Q Consensus 295 ~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl----~ 370 (704)
..+.+. .+-.||.||.+...+ +....++.+.++.|+.++-.+++..++-+..... .++ .
T Consensus 317 ~~~~~~-----------~GsrIIiTTrd~~vl-----~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~-~~~~~l~~ 379 (1153)
T PLN03210 317 QTQWFG-----------SGSRIIVITKDKHFL-----RAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPP-DGFMELAS 379 (1153)
T ss_pred hCccCC-----------CCcEEEEEeCcHHHH-----HhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCc-HHHHHHHH
Confidence 222221 123566677654433 2224678899999999999999998865433222 122 3
Q ss_pred HHHHhccCCC
Q 005285 371 ELVFRTVGFS 380 (704)
Q Consensus 371 ~La~~t~G~s 380 (704)
+++....|..
T Consensus 380 ~iv~~c~GLP 389 (1153)
T PLN03210 380 EVALRAGNLP 389 (1153)
T ss_pred HHHHHhCCCc
Confidence 4556666654
No 260
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.92 E-value=4.2e-05 Score=86.49 Aligned_cols=77 Identities=23% Similarity=0.396 Sum_probs=57.6
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccccchhhhh---------------HHHHHHHHHHHhhC
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKSG---------------AARINEMFSIARRN 261 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~~~~~~g---------------~~~vr~lF~~Ak~~ 261 (704)
|......+||+|+||+|||+|+..+|... +.+++++++.+..+..... ...+..+++..++.
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 45666678999999999999999998754 6789999987654332111 12245666777777
Q ss_pred CCeEEEEccchhhhc
Q 005285 262 APAFVFVDEIDAIAG 276 (704)
Q Consensus 262 ~P~ILfIDEiDal~~ 276 (704)
.|.+|+||++..+..
T Consensus 156 ~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 156 KPDLVVIDSIQTMYS 170 (446)
T ss_pred CCCEEEEechhhhcc
Confidence 899999999999864
No 261
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.90 E-value=5.1e-05 Score=83.70 Aligned_cols=77 Identities=22% Similarity=0.405 Sum_probs=56.1
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccccchhhh---------------hHHHHHHHHHHHhhC
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKS---------------GAARINEMFSIARRN 261 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~~~~~~---------------g~~~vr~lF~~Ak~~ 261 (704)
|+.+..-++|+|+||+|||+|+..+|... +.+++++++.+-...... ....+..+++.+...
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 45566678999999999999999998754 468889987654332111 112245666677777
Q ss_pred CCeEEEEccchhhhc
Q 005285 262 APAFVFVDEIDAIAG 276 (704)
Q Consensus 262 ~P~ILfIDEiDal~~ 276 (704)
.|.+|+||+|..+..
T Consensus 158 ~~~lVVIDSIq~l~~ 172 (372)
T cd01121 158 KPDLVIIDSIQTVYS 172 (372)
T ss_pred CCcEEEEcchHHhhc
Confidence 899999999999864
No 262
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.89 E-value=3.2e-05 Score=87.59 Aligned_cols=229 Identities=14% Similarity=0.105 Sum_probs=122.6
Q ss_pred cccceecCcccHHHH-HHHHHHhCCchhhhh--cCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccchhh
Q 005285 169 MYKEVVLGGDVWDLL-DELMIYMGNPMQYYE--RGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEK 245 (704)
Q Consensus 169 ~f~dVvG~~~~k~~L-~elv~~l~~p~~~~~--~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~~~ 245 (704)
-|-.|-|.+.+|.-| -.+.- .-.++.. ..++..-+|+++|.||||||-+.+++++-+...++ +++..- ...|
T Consensus 343 l~PsIyGhe~VK~GilL~LfG---Gv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vY-tsGkaS-SaAG 417 (764)
T KOG0480|consen 343 LFPSIYGHELVKAGILLSLFG---GVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVY-TSGKAS-SAAG 417 (764)
T ss_pred hCccccchHHHHhhHHHHHhC---CccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceE-ecCccc-cccc
Confidence 455667888777532 22211 1112222 23445567999999999999999999987655543 222221 1111
Q ss_pred hhHHHHHH--HHH---HHh---hCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccC--CccccccCccEE
Q 005285 246 SGAARINE--MFS---IAR---RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERT--GIDRFSLRQAVI 315 (704)
Q Consensus 246 ~g~~~vr~--lF~---~Ak---~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~--~~~~~~~~~~Vi 315 (704)
.+++.+++ -++ +|- -....|-+|||+|.+.-+ -..++++.|+....+- .+-.-+.+-.--
T Consensus 418 LTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~----------dqvAihEAMEQQtISIaKAGv~aTLnARtS 487 (764)
T KOG0480|consen 418 LTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVK----------DQVAIHEAMEQQTISIAKAGVVATLNARTS 487 (764)
T ss_pred ceEEEEecCCCCceeeecCcEEEccCceEEechhcccChH----------hHHHHHHHHHhheehheecceEEeecchhh
Confidence 11111110 000 010 012358899999998422 2346666676543221 111111122245
Q ss_pred EEEEcCCCC-------------CCcccccCCCccce-eeeeCCCCHHHHHHHHHHHhcCCCcccc---------------
Q 005285 316 FICATNRPD-------------ELDLEFVRPGRIDR-RLYIGLPDAKQRVQIFDVHSAGKQLAED--------------- 366 (704)
Q Consensus 316 VIaaTN~p~-------------~LD~aLlRpgRfd~-~I~v~~Pd~~eR~~Il~~~l~~~~l~~d--------------- 366 (704)
||||+|... .+++++++ |||. .|-++-|++..=..|-++.+.......+
T Consensus 488 IlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vrk 565 (764)
T KOG0480|consen 488 ILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVRK 565 (764)
T ss_pred hhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHHHHH
Confidence 788888643 47789998 9997 4456778776554444332221110000
Q ss_pred -----------c------c----HHHH--------HHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Q 005285 367 -----------V------N----FEEL--------VFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414 (704)
Q Consensus 367 -----------v------d----l~~L--------a~~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al~~ 414 (704)
+ . +..| .+.+.+.|-++|+.+++-+-.+|.-.-.+.||.+|+++|++-
T Consensus 566 Yi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~eL 642 (764)
T KOG0480|consen 566 YIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVEL 642 (764)
T ss_pred HHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHH
Confidence 0 0 0000 011235677888888887777777777777888888877763
No 263
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.87 E-value=0.0004 Score=74.47 Aligned_cols=127 Identities=10% Similarity=0.131 Sum_probs=89.0
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCC-----------C--EEEEeCccccchhhhhHHHHHHHHHHHhh-----CCC
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKESGL-----------P--FVFASGAEFTDSEKSGAARINEMFSIARR-----NAP 263 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~g~-----------~--~v~is~s~~~~~~~~g~~~vr~lF~~Ak~-----~~P 263 (704)
+.+...||+|+.|.||+.+|+++|..+-+ | +..++.. . ...+...++.+.+.... ...
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g-~~i~vd~Ir~l~~~~~~~~~~~~~~ 91 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---D-KDLSKSEFLSAINKLYFSSFVQSQK 91 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---C-CcCCHHHHHHHHHHhccCCcccCCc
Confidence 46778999999999999999999987621 2 2222200 0 11122345555444421 245
Q ss_pred eEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeC
Q 005285 264 AFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIG 343 (704)
Q Consensus 264 ~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~ 343 (704)
.|++||++|.+. ....|.||..|+..... +++|.+|+.++.|-+.+++ |+ ..++|.
T Consensus 92 KvvII~~~e~m~----------~~a~NaLLK~LEEPp~~-----------t~~il~~~~~~kll~TI~S--Rc-~~~~f~ 147 (299)
T PRK07132 92 KILIIKNIEKTS----------NSLLNALLKTIEEPPKD-----------TYFLLTTKNINKVLPTIVS--RC-QVFNVK 147 (299)
T ss_pred eEEEEecccccC----------HHHHHHHHHHhhCCCCC-----------eEEEEEeCChHhChHHHHh--Ce-EEEECC
Confidence 799999998883 34678999999875433 5777777788999999988 87 679999
Q ss_pred CCCHHHHHHHHHH
Q 005285 344 LPDAKQRVQIFDV 356 (704)
Q Consensus 344 ~Pd~~eR~~Il~~ 356 (704)
+|+.++..+.+..
T Consensus 148 ~l~~~~l~~~l~~ 160 (299)
T PRK07132 148 EPDQQKILAKLLS 160 (299)
T ss_pred CCCHHHHHHHHHH
Confidence 9999988877664
No 264
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.83 E-value=7.5e-05 Score=89.65 Aligned_cols=204 Identities=20% Similarity=0.238 Sum_probs=120.2
Q ss_pred cCCCccccceecCcccHH-HHHHHHHHhCCc--hhhhhcCCc-cCc-eEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCc
Q 005285 164 SDTKSMYKEVVLGGDVWD-LLDELMIYMGNP--MQYYERGVQ-FVR-GVLLSGPPGTGKTLFARTLAKESGLPFVFASGA 238 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~-~L~elv~~l~~p--~~~~~~g~~-~p~-gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s 238 (704)
+..+..-.++.|...... ....+-++ +++ ..|...+-. .-+ .+|++||||+|||+.+.++|.+.|..++..+.+
T Consensus 313 k~~p~~~k~~~~~~~~~~~~~~~l~~~-k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas 391 (871)
T KOG1968|consen 313 KYQPTSSKALEGNASSSKKASKWLAKS-KDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEKNAS 391 (871)
T ss_pred ccccccHHhhhcccchhhhhhhHHHhh-hccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeecCcc
Confidence 445555577877765433 22222222 222 122222111 112 469999999999999999999999999999998
Q ss_pred cccchhh------h--hHHHHHHHH---HHHhh-CCC-eEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCc
Q 005285 239 EFTDSEK------S--GAARINEMF---SIARR-NAP-AFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGI 305 (704)
Q Consensus 239 ~~~~~~~------~--g~~~vr~lF---~~Ak~-~~P-~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~ 305 (704)
+...... . +...+...| ..... +.. .||++||+|.+.+. +...-..+.++....
T Consensus 392 ~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~----dRg~v~~l~~l~~ks--------- 458 (871)
T KOG1968|consen 392 DVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGE----DRGGVSKLSSLCKKS--------- 458 (871)
T ss_pred ccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccch----hhhhHHHHHHHHHhc---------
Confidence 7654311 1 111233333 00000 112 38999999988641 111222334444411
Q ss_pred cccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHH
Q 005285 306 DRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADI 384 (704)
Q Consensus 306 ~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL 384 (704)
.+-+|+++|..+.....-+. |-+.-++|+.|+...+..-+...+....+. .+-.++++...+ ++||
T Consensus 459 -------~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~----~~Di 525 (871)
T KOG1968|consen 459 -------SRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLS----GGDI 525 (871)
T ss_pred -------cCCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhc----ccCH
Confidence 14678888887766552222 333568999999999888777666543332 333567777765 6799
Q ss_pred HHHHHHHHHH
Q 005285 385 RNLVNESGIM 394 (704)
Q Consensus 385 ~~Lv~eA~~~ 394 (704)
++.++.-...
T Consensus 526 R~~i~~lq~~ 535 (871)
T KOG1968|consen 526 RQIIMQLQFW 535 (871)
T ss_pred HHHHHHHhhh
Confidence 9888876665
No 265
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.81 E-value=3.4e-05 Score=75.58 Aligned_cols=39 Identities=26% Similarity=0.328 Sum_probs=24.8
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCCC---EEEEeCccc
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLP---FVFASGAEF 240 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~g~~---~v~is~s~~ 240 (704)
..++.++|+|++|+|||++++++...+..+ ++.+++...
T Consensus 22 ~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 22 GSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 456899999999999999999987654322 777766665
No 266
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.78 E-value=3.2e-05 Score=70.07 Aligned_cols=23 Identities=43% Similarity=0.781 Sum_probs=20.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHcC
Q 005285 207 VLLSGPPGTGKTLFARTLAKESG 229 (704)
Q Consensus 207 vLL~GPPGTGKT~LAraiA~e~g 229 (704)
|.|+||||+|||++|+.+|..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999987664
No 267
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.78 E-value=0.00014 Score=74.43 Aligned_cols=76 Identities=21% Similarity=0.337 Sum_probs=50.5
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHH---cCCCEEEEeCccccch-hh---hh--------------------HHHHH
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEFTDS-EK---SG--------------------AARIN 252 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e---~g~~~v~is~s~~~~~-~~---~g--------------------~~~vr 252 (704)
|.+...-++++||||+|||++|..+|.+ .|.+++++++..+... .. .. ...++
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 98 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQIAGEDFEELLSNIIIFEPSSFEEQSEAIR 98 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhhChHhHhhCeEEEeCCCHHHHHHHHH
Confidence 5566667899999999999999999864 3788999988732211 10 00 00112
Q ss_pred HHHHHHhhCCCeEEEEccchhhhc
Q 005285 253 EMFSIARRNAPAFVFVDEIDAIAG 276 (704)
Q Consensus 253 ~lF~~Ak~~~P~ILfIDEiDal~~ 276 (704)
.+....+ ..+.+|+||-+.++..
T Consensus 99 ~~~~~~~-~~~~lvVIDsi~al~~ 121 (225)
T PRK09361 99 KAEKLAK-ENVGLIVLDSATSLYR 121 (225)
T ss_pred HHHHHHH-hcccEEEEeCcHHHhH
Confidence 2222222 5789999999999864
No 268
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.76 E-value=4.1e-05 Score=87.38 Aligned_cols=188 Identities=24% Similarity=0.320 Sum_probs=110.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH--cCCCEEEEeCccccchhhhh------------H--HHHHHHHHHHhhCCCeEEE
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKE--SGLPFVFASGAEFTDSEKSG------------A--ARINEMFSIARRNAPAFVF 267 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e--~g~~~v~is~s~~~~~~~~g------------~--~~vr~lF~~Ak~~~P~ILf 267 (704)
.-.+||.|.|||||-.|||++-.. ..-||+.++|..+.+..... + .-.+..+++|- ...+|
T Consensus 336 ~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~---gGtlF 412 (606)
T COG3284 336 DLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQAD---GGTLF 412 (606)
T ss_pred CCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecC---CCccH
Confidence 345999999999999999999654 45699999998876531110 0 00122233332 24799
Q ss_pred EccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccce-------ee
Q 005285 268 VDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDR-------RL 340 (704)
Q Consensus 268 IDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~-------~I 340 (704)
+|||..+. ......||..+.......-+... ..-.|-||+||+++= ..+.+-|||-. ..
T Consensus 413 ldeIgd~p----------~~~Qs~LLrVl~e~~v~p~g~~~-~~vdirvi~ath~dl---~~lv~~g~fredLyyrL~~~ 478 (606)
T COG3284 413 LDEIGDMP----------LALQSRLLRVLQEGVVTPLGGTR-IKVDIRVIAATHRDL---AQLVEQGRFREDLYYRLNAF 478 (606)
T ss_pred HHHhhhch----------HHHHHHHHHHHhhCceeccCCcc-eeEEEEEEeccCcCH---HHHHHcCCchHHHHHHhcCe
Confidence 99998884 23556788777664433322222 455689999998732 24556677743 45
Q ss_pred eeCCCCHHHHHH---HHHHHhc-CC----CccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 005285 341 YIGLPDAKQRVQ---IFDVHSA-GK----QLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (704)
Q Consensus 341 ~v~~Pd~~eR~~---Il~~~l~-~~----~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al 412 (704)
.|.+|...+|.+ .|..++. .. .+.++.-..-++..=+| +-++|.|+++.++..+ ....|...|+...+
T Consensus 479 ~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPG-Nirel~~v~~~~~~l~---~~g~~~~~dlp~~l 554 (606)
T COG3284 479 VITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPG-NIRELDNVIERLAALS---DGGRIRVSDLPPEL 554 (606)
T ss_pred eeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCC-cHHHHHHHHHHHHHcC---CCCeeEcccCCHHH
Confidence 567777766643 3332222 21 22222212223333344 5678888888888765 22334444444333
No 269
>PHA00729 NTP-binding motif containing protein
Probab=97.73 E-value=4.8e-05 Score=77.84 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=23.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCC
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKESGL 230 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e~g~ 230 (704)
.+++|+|+||||||++|.++|..++.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~ 43 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFW 43 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999998763
No 270
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.73 E-value=0.00013 Score=78.40 Aligned_cols=163 Identities=17% Similarity=0.185 Sum_probs=91.7
Q ss_pred CcccHHHHHHHHHHhCCchhhhh----c---CCccCceEEEEcCCCChHHHHHHHHHHHcCCCE-EEEeCccccchhhhh
Q 005285 176 GGDVWDLLDELMIYMGNPMQYYE----R---GVQFVRGVLLSGPPGTGKTLFARTLAKESGLPF-VFASGAEFTDSEKSG 247 (704)
Q Consensus 176 ~~~~k~~L~elv~~l~~p~~~~~----~---g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~-v~is~s~~~~~~~~g 247 (704)
+..+.+.|..+.+.+..+..-.. + ...+++|+.|||+-|.|||.|.-..-..+..+- ..+....|+..+...
T Consensus 30 Q~~a~~~Ldrl~~~~~~~~~~~~~l~~lf~r~~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~ 109 (367)
T COG1485 30 QPAAAAALDRLYDELVAPRSARKALGWLFGRDHGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQR 109 (367)
T ss_pred HHHHHHHHHHHHHHhhcccccccccccccccCCCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHH
Confidence 34455566666654333321111 1 244789999999999999999999988765543 233333444332221
Q ss_pred HHH-------HHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEc
Q 005285 248 AAR-------INEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (704)
Q Consensus 248 ~~~-------vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (704)
... +..+-....+ .-.||+|||+.- .+-.....+..|++.|-. +||++++|+
T Consensus 110 l~~l~g~~dpl~~iA~~~~~-~~~vLCfDEF~V-------tDI~DAMiL~rL~~~Lf~-------------~GV~lvaTS 168 (367)
T COG1485 110 LHTLQGQTDPLPPIADELAA-ETRVLCFDEFEV-------TDIADAMILGRLLEALFA-------------RGVVLVATS 168 (367)
T ss_pred HHHHcCCCCccHHHHHHHHh-cCCEEEeeeeee-------cChHHHHHHHHHHHHHHH-------------CCcEEEEeC
Confidence 111 1111111111 235999999862 123334577888888754 358999999
Q ss_pred CC-CCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccccHH
Q 005285 321 NR-PDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFE 370 (704)
Q Consensus 321 N~-p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~ 370 (704)
|. |+.|-+ ++|.+.-.+| -.++++.++.-..++...|..
T Consensus 169 N~~P~~LY~-----dGlqR~~FLP------~I~li~~~~~v~~vD~~~DYR 208 (367)
T COG1485 169 NTAPDNLYK-----DGLQRERFLP------AIDLIKSHFEVVNVDGPVDYR 208 (367)
T ss_pred CCChHHhcc-----cchhHHhhHH------HHHHHHHheEEEEecCCcccc
Confidence 97 455432 2333222222 345677777666666555653
No 271
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.70 E-value=0.00022 Score=77.02 Aligned_cols=78 Identities=23% Similarity=0.319 Sum_probs=52.6
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccccch-----hh------------hhHHHHHHHHHHHh
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDS-----EK------------SGAARINEMFSIAR 259 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~~~-----~~------------~g~~~vr~lF~~Ak 259 (704)
|.+..+.++++||||||||+||..++.++ |.+++++++.+.... .+ .....+..+....+
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 55666678999999999999988876543 778888877553321 00 11122333333445
Q ss_pred hCCCeEEEEccchhhhcc
Q 005285 260 RNAPAFVFVDEIDAIAGR 277 (704)
Q Consensus 260 ~~~P~ILfIDEiDal~~~ 277 (704)
...+.+|+||-+-++.++
T Consensus 131 ~~~~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPK 148 (321)
T ss_pred ccCCcEEEEcchhhhccc
Confidence 667899999999999754
No 272
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.67 E-value=0.0004 Score=70.66 Aligned_cols=40 Identities=38% Similarity=0.484 Sum_probs=32.3
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCcc
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAE 239 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~ 239 (704)
|+....-++++|+||+|||+++..+|.+. |.++++++...
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~ 57 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEG 57 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 45566668999999999999999998754 67888887653
No 273
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.67 E-value=5.7e-05 Score=75.77 Aligned_cols=123 Identities=15% Similarity=0.180 Sum_probs=59.5
Q ss_pred EEEEcCCCChHHHHHHHH-HH---HcCCCEEEEeCcccc-----chhhhhHH-------------HHHHHHHHHhhCCCe
Q 005285 207 VLLSGPPGTGKTLFARTL-AK---ESGLPFVFASGAEFT-----DSEKSGAA-------------RINEMFSIARRNAPA 264 (704)
Q Consensus 207 vLL~GPPGTGKT~LArai-A~---e~g~~~v~is~s~~~-----~~~~~g~~-------------~vr~lF~~Ak~~~P~ 264 (704)
.+++|.||+|||+.|-.. .. ..|.+++. +...+. ...+.... ..............+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 578999999999988665 43 34777765 543221 10000000 011222222222568
Q ss_pred EEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCC
Q 005285 265 FVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGL 344 (704)
Q Consensus 265 ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~ 344 (704)
+|+|||++.+.+.+........ ..+..+... ...++-||.+|..+..||+.+++ +.+.++.+..
T Consensus 82 liviDEa~~~~~~r~~~~~~~~----~~~~~l~~h----------Rh~g~diiliTQ~~~~id~~ir~--lve~~~~~~k 145 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKGKKVP----EIIEFLAQH----------RHYGWDIILITQSPSQIDKFIRD--LVEYHYHCRK 145 (193)
T ss_dssp EEEETTGGGTSB---T-T--------HHHHGGGGC----------CCTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE
T ss_pred EEEEECChhhcCCCccccccch----HHHHHHHHh----------CcCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEe
Confidence 9999999999876544222222 222222221 12247888999999999998887 7787777755
Q ss_pred CC
Q 005285 345 PD 346 (704)
Q Consensus 345 Pd 346 (704)
++
T Consensus 146 ~~ 147 (193)
T PF05707_consen 146 LD 147 (193)
T ss_dssp --
T ss_pred ec
Confidence 43
No 274
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.66 E-value=0.00014 Score=74.39 Aligned_cols=72 Identities=19% Similarity=0.258 Sum_probs=41.3
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCcc----------ccch-hhhhHHHHHHHHHHHh--hCCCeEEEEc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAE----------FTDS-EKSGAARINEMFSIAR--RNAPAFVFVD 269 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~----------~~~~-~~~g~~~vr~lF~~Ak--~~~P~ILfID 269 (704)
.|..+|+||+||+|||++|+.+++. ..++..+++. .... .......+.+.+..+. .....+|+||
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVID 88 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVID 88 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEe
Confidence 4677999999999999999999632 2233333321 0000 0001112233333332 2446799999
Q ss_pred cchhhhc
Q 005285 270 EIDAIAG 276 (704)
Q Consensus 270 EiDal~~ 276 (704)
.++.+..
T Consensus 89 sI~~l~~ 95 (220)
T TIGR01618 89 NISALQN 95 (220)
T ss_pred cHHHHHH
Confidence 9999853
No 275
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.64 E-value=0.00058 Score=70.56 Aligned_cols=76 Identities=17% Similarity=0.296 Sum_probs=49.0
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHH---cCCCEEEEeCccccchh-------h------------------------
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEFTDSE-------K------------------------ 245 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e---~g~~~v~is~s~~~~~~-------~------------------------ 245 (704)
|++...-+++.||||||||+++..++.. -|.+.++++..+-.... +
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 99 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGN 99 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccCh
Confidence 3555667899999999999998665443 36778888765422110 0
Q ss_pred -hhHHHHHHHHHHHhhCCCeEEEEccchhhh
Q 005285 246 -SGAARINEMFSIARRNAPAFVFVDEIDAIA 275 (704)
Q Consensus 246 -~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~ 275 (704)
.....+..+...+....|.+++|||+-++.
T Consensus 100 ~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 100 SEKRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 001223344445555678999999999875
No 276
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=97.64 E-value=0.0014 Score=75.18 Aligned_cols=137 Identities=20% Similarity=0.231 Sum_probs=72.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccchhhhhH-----HHHHHHHHHHh---hCCCeEEEEccchhhh
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGA-----ARINEMFSIAR---RNAPAFVFVDEIDAIA 275 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~~~~g~-----~~vr~lF~~Ak---~~~P~ILfIDEiDal~ 275 (704)
.-+|||+|.||||||.+.+.+++-+..-.+ .|+---.. +|..+ ..-+.+..+.- .....|-+|||+|.+.
T Consensus 462 ~INILL~GDPGtsKSqlLqyv~~l~pRg~y-TSGkGsSa-vGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~ 539 (804)
T KOG0478|consen 462 DINILLVGDPGTSKSQLLQYCHRLLPRGVY-TSGKGSSA-VGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMS 539 (804)
T ss_pred cceEEEecCCCcCHHHHHHHHHHhCCccee-ecCCccch-hcceeeEEecCccceeeeecCcEEEcCCceEEchhhhhhh
Confidence 457999999999999999999987643322 22111000 00000 00111111100 1123588999999993
Q ss_pred ccCCCCChhHHHHHHHHHHHhcCCccc---CCccccccCccEEEEEEcCCCC-------------CCcccccCCCcccee
Q 005285 276 GRHARKDPRRRATFEALIAQLDGDKER---TGIDRFSLRQAVIFICATNRPD-------------ELDLEFVRPGRIDRR 339 (704)
Q Consensus 276 ~~~~~~~~e~~~~ln~LL~~ld~~~~~---~~~~~~~~~~~ViVIaaTN~p~-------------~LD~aLlRpgRfd~~ 339 (704)
. .+-+-|++.|+...-+ .|+- .+-+-.--|+|+.|... .|+|.|++ |||.+
T Consensus 540 d----------StrSvLhEvMEQQTvSIAKAGII-~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS--RFDLI 606 (804)
T KOG0478|consen 540 D----------STRSVLHEVMEQQTLSIAKAGII-ASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS--RFDLI 606 (804)
T ss_pred H----------HHHHHHHHHHHHhhhhHhhccee-eeccccceeeeeeccccccCCCCCchhhccCCChhhhh--hhcEE
Confidence 1 2334455555432211 1110 01112245788888432 48899999 99975
Q ss_pred e-eeCCCCHHHHHHHHH
Q 005285 340 L-YIGLPDAKQRVQIFD 355 (704)
Q Consensus 340 I-~v~~Pd~~eR~~Il~ 355 (704)
+ -++.||+..=+.|-.
T Consensus 607 ylllD~~DE~~Dr~La~ 623 (804)
T KOG0478|consen 607 FLLLDKPDERSDRRLAD 623 (804)
T ss_pred EEEecCcchhHHHHHHH
Confidence 4 357777764444433
No 277
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.64 E-value=4.1e-05 Score=70.13 Aligned_cols=30 Identities=40% Similarity=0.889 Sum_probs=27.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHcCCCEEEEe
Q 005285 207 VLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (704)
Q Consensus 207 vLL~GPPGTGKT~LAraiA~e~g~~~v~is 236 (704)
|+|.||||+||||+|+.+|+.+|.+++.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 789999999999999999999998887654
No 278
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.62 E-value=0.0002 Score=77.70 Aligned_cols=157 Identities=18% Similarity=0.231 Sum_probs=90.3
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCCCEE---EEeCccccchhhhhH--------------------HHHHHHHHHH
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLPFV---FASGAEFTDSEKSGA--------------------ARINEMFSIA 258 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v---~is~s~~~~~~~~g~--------------------~~vr~lF~~A 258 (704)
.+|+|++|||.-|||||+|.-.+-..+-- .- .+...+|+-.+.... .-+.-+-+..
T Consensus 112 ~~PkGlYlYG~VGcGKTmLMDlFy~~~~~-i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA~eI 190 (467)
T KOG2383|consen 112 GPPKGLYLYGSVGCGKTMLMDLFYDALPP-IWRKQRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVADEI 190 (467)
T ss_pred CCCceEEEecccCcchhHHHHHHhhcCCc-hhhhhhhhHHHHHHHHHHHHHHHHHhccccCccccccccCCccHHHHHHH
Confidence 46999999999999999999887654311 00 111122222111000 0011111111
Q ss_pred hhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCC-CCCCcc-cccCCCcc
Q 005285 259 RRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNR-PDELDL-EFVRPGRI 336 (704)
Q Consensus 259 k~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~-p~~LD~-aLlRpgRf 336 (704)
.. ..++|++||+.-- +-...-.+++|...|-. +||+++||+|+ |+.|-. .+.
T Consensus 191 a~-ea~lLCFDEfQVT-------DVADAmiL~rLf~~Lf~-------------~GvVlvATSNR~P~dLYknGlQ----- 244 (467)
T KOG2383|consen 191 AE-EAILLCFDEFQVT-------DVADAMILKRLFEHLFK-------------NGVVLVATSNRAPEDLYKNGLQ----- 244 (467)
T ss_pred hh-hceeeeechhhhh-------hHHHHHHHHHHHHHHHh-------------CCeEEEEeCCCChHHHhhcchh-----
Confidence 11 2379999998642 22233467777777643 25899999998 555543 232
Q ss_pred ceeeeeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccC----CCHH-HHHHHHHHHHH
Q 005285 337 DRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVG----FSGA-DIRNLVNESGI 393 (704)
Q Consensus 337 d~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G----~sga-dL~~Lv~eA~~ 393 (704)
|...+| -..+|+.++.-..+...+|....+.. .+ |.+. |...++++--.
T Consensus 245 -R~~F~P------fI~~L~~rc~vi~ldS~vDYR~~~~~-~~~~~yf~~~~d~~~~l~~~fk 298 (467)
T KOG2383|consen 245 -RENFIP------FIALLEERCKVIQLDSGVDYRRKAKS-AGENYYFISETDVETVLKEWFK 298 (467)
T ss_pred -hhhhhh------HHHHHHHhheEEecCCccchhhccCC-CCceeEecChhhHHHHHHHHHH
Confidence 333333 45678888888888888998844332 22 3444 78877777653
No 279
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.61 E-value=0.00032 Score=73.73 Aligned_cols=97 Identities=22% Similarity=0.251 Sum_probs=63.0
Q ss_pred eecCcccHHH-HHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc-----CCCEE--EEeCccccchh
Q 005285 173 VVLGGDVWDL-LDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-----GLPFV--FASGAEFTDSE 244 (704)
Q Consensus 173 VvG~~~~k~~-L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~-----g~~~v--~is~s~~~~~~ 244 (704)
+.||.-+++. +..+-.++.+|. -+.|-.+=|||+|||||...++.||+.. ..+++ ++.-..|....
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~ 157 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHAS 157 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChH
Confidence 5677777764 445556777772 2456667789999999999999999865 22333 33333444331
Q ss_pred h---hhHHHHHHHHHHHhhCCCeEEEEccchhhh
Q 005285 245 K---SGAARINEMFSIARRNAPAFVFVDEIDAIA 275 (704)
Q Consensus 245 ~---~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~ 275 (704)
. -..+..+.+-..+..++.+|+++||.|.+.
T Consensus 158 ~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp 191 (344)
T KOG2170|consen 158 KIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLP 191 (344)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCceEEechhhhcC
Confidence 1 112223344555667778899999999994
No 280
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.61 E-value=0.00052 Score=70.29 Aligned_cols=98 Identities=24% Similarity=0.294 Sum_probs=61.0
Q ss_pred cCCccCceEEEEcCCCChHHHHHHHHHHH---c-CCCEEEEeCccccch-------hh----------------------
Q 005285 199 RGVQFVRGVLLSGPPGTGKTLFARTLAKE---S-GLPFVFASGAEFTDS-------EK---------------------- 245 (704)
Q Consensus 199 ~g~~~p~gvLL~GPPGTGKT~LAraiA~e---~-g~~~v~is~s~~~~~-------~~---------------------- 245 (704)
.|.+....+|+.||||||||+|+..++.+ . |-++++++..+-.+. .+
T Consensus 14 GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 14 GGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccc
Confidence 36677788999999999999999987643 3 889999987552210 00
Q ss_pred -----hhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcC
Q 005285 246 -----SGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDG 298 (704)
Q Consensus 246 -----~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~ 298 (704)
.-......+.+..+...+.+++||-+..+. . ..........+..+...+..
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~-~-~~~~~~~r~~l~~l~~~l~~ 149 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSLSALL-L-YDDPEELRRFLRALIKFLKS 149 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHT-T-SSSGGGHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHh-h-cCCHHHHHHHHHHHHHHHHH
Confidence 001112344444555677999999999992 2 12233344566667666643
No 281
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.60 E-value=0.00037 Score=71.87 Aligned_cols=40 Identities=23% Similarity=0.457 Sum_probs=33.3
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHH---cCCCEEEEeCcc
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAE 239 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e---~g~~~v~is~s~ 239 (704)
|.+....++++|+||||||+|+.+++.+ .|.++++++..+
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~ 63 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN 63 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 5677788999999999999999999654 377888888655
No 282
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.58 E-value=0.00031 Score=79.65 Aligned_cols=77 Identities=19% Similarity=0.321 Sum_probs=55.2
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccccchhhhh---------------HHHHHHHHHHHhhC
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKSG---------------AARINEMFSIARRN 261 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~~~~~~g---------------~~~vr~lF~~Ak~~ 261 (704)
|+.+..-+||+|+||+|||+|+..+|... |.+++++++.+-....... ...+..+...+.+.
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 45666678999999999999999997654 5688899887643321111 11234555666677
Q ss_pred CCeEEEEccchhhhc
Q 005285 262 APAFVFVDEIDAIAG 276 (704)
Q Consensus 262 ~P~ILfIDEiDal~~ 276 (704)
.|.+|+||.|..+..
T Consensus 170 ~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 170 NPQACVIDSIQTLYS 184 (454)
T ss_pred CCcEEEEecchhhcc
Confidence 899999999999854
No 283
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.56 E-value=0.00049 Score=70.69 Aligned_cols=100 Identities=18% Similarity=0.155 Sum_probs=60.0
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---------CCCEEEEeCccccch--hhh----------------------
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---------GLPFVFASGAEFTDS--EKS---------------------- 246 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e~---------g~~~v~is~s~~~~~--~~~---------------------- 246 (704)
|.+...-+.|+||||||||+++..+|... +..++++++.+-... ...
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAY 94 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecC
Confidence 56666778999999999999999998543 257788887652111 000
Q ss_pred ----hHHHHHHHHHHHhhC-CCeEEEEccchhhhccCCCCC---hhHHHHHHHHHHHhcCC
Q 005285 247 ----GAARINEMFSIARRN-APAFVFVDEIDAIAGRHARKD---PRRRATFEALIAQLDGD 299 (704)
Q Consensus 247 ----g~~~vr~lF~~Ak~~-~P~ILfIDEiDal~~~~~~~~---~e~~~~ln~LL~~ld~~ 299 (704)
-...+..+-...... .+.+|+||-+.++......+. .++.+.+..++..|...
T Consensus 95 ~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~l 155 (235)
T cd01123 95 NSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRL 155 (235)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHH
Confidence 001112222223344 789999999999853211111 34445566666666543
No 284
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.54 E-value=0.00049 Score=74.40 Aligned_cols=78 Identities=24% Similarity=0.307 Sum_probs=52.3
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHH---cCCCEEEEeCccccch-h----h------------hhHHHHHHHHHHHh
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEFTDS-E----K------------SGAARINEMFSIAR 259 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e---~g~~~v~is~s~~~~~-~----~------------~g~~~vr~lF~~Ak 259 (704)
|++..+-++++||||||||+||-.++.+ .|..+++++....... . + .+...+..+-..++
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 4555667899999999999999988754 4778888887552221 0 0 11112222223345
Q ss_pred hCCCeEEEEccchhhhcc
Q 005285 260 RNAPAFVFVDEIDAIAGR 277 (704)
Q Consensus 260 ~~~P~ILfIDEiDal~~~ 277 (704)
...+.+|+||-+-++.++
T Consensus 131 s~~~~lIVIDSvaal~~~ 148 (325)
T cd00983 131 SGAVDLIVVDSVAALVPK 148 (325)
T ss_pred ccCCCEEEEcchHhhccc
Confidence 667899999999999754
No 285
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.54 E-value=0.00059 Score=68.90 Aligned_cols=120 Identities=25% Similarity=0.335 Sum_probs=65.9
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccchhhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCC
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHA 279 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~ 279 (704)
|.+....++|.|+-|+|||++.+.|+.+ ++.-+...... . ..... ...+ -|+.|||++.+..+
T Consensus 48 g~k~d~~lvl~G~QG~GKStf~~~L~~~----~~~d~~~~~~~--k---d~~~~----l~~~--~iveldEl~~~~k~-- 110 (198)
T PF05272_consen 48 GCKNDTVLVLVGKQGIGKSTFFRKLGPE----YFSDSINDFDD--K---DFLEQ----LQGK--WIVELDELDGLSKK-- 110 (198)
T ss_pred CCcCceeeeEecCCcccHHHHHHHHhHH----hccCccccCCC--c---HHHHH----HHHh--HheeHHHHhhcchh--
Confidence 6666677889999999999999999766 22111111111 1 11111 1111 48999999988521
Q ss_pred CCChhHHHHHHHHHHHhc-CCcccCCccccccCccEEEEEEcCCCCCC-cccccCCCccceeeeeCC
Q 005285 280 RKDPRRRATFEALIAQLD-GDKERTGIDRFSLRQAVIFICATNRPDEL-DLEFVRPGRIDRRLYIGL 344 (704)
Q Consensus 280 ~~~~e~~~~ln~LL~~ld-~~~~~~~~~~~~~~~~ViVIaaTN~p~~L-D~aLlRpgRfd~~I~v~~ 344 (704)
....+..++..-. .....-+..........++|+|||..+.| |+.=-| || ..|.+..
T Consensus 111 -----~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnR--Rf-~~v~v~~ 169 (198)
T PF05272_consen 111 -----DVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNR--RF-WPVEVSK 169 (198)
T ss_pred -----hHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCe--EE-EEEEEcC
Confidence 1223444444322 11111111112234457899999998865 444445 77 4555554
No 286
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.52 E-value=0.00055 Score=69.85 Aligned_cols=100 Identities=19% Similarity=0.158 Sum_probs=60.0
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---C------CCEEEEeCccccch--hhh----------------------
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---G------LPFVFASGAEFTDS--EKS---------------------- 246 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g------~~~v~is~s~~~~~--~~~---------------------- 246 (704)
|.+...-+.|+||||+|||+++..+|... + ..++++++.+-... ...
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCC
Confidence 56666778999999999999999998653 3 66778887652111 000
Q ss_pred hHHHHHHHHHHH----hhCCCeEEEEccchhhhccCCCCC---hhHHHHHHHHHHHhcCC
Q 005285 247 GAARINEMFSIA----RRNAPAFVFVDEIDAIAGRHARKD---PRRRATFEALIAQLDGD 299 (704)
Q Consensus 247 g~~~vr~lF~~A----k~~~P~ILfIDEiDal~~~~~~~~---~e~~~~ln~LL~~ld~~ 299 (704)
....+...+... ....+.+|+||-+..+......+. .++.+.+.+++..|...
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~ 154 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRL 154 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHH
Confidence 011112222222 245678999999998864321111 23445566666666554
No 287
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.52 E-value=0.0033 Score=67.70 Aligned_cols=28 Identities=29% Similarity=0.216 Sum_probs=24.5
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcC
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKESG 229 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~g 229 (704)
..|..|.|+|+-|+|||++.+.+-+++.
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~ 45 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELK 45 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688899999999999999999977653
No 288
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.50 E-value=9.6e-05 Score=71.77 Aligned_cols=33 Identities=33% Similarity=0.430 Sum_probs=30.1
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCEEEE
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~i 235 (704)
++..|+|+|+||||||++|+++|..+|.+++..
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~ 35 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT 35 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 567899999999999999999999999998843
No 289
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.50 E-value=0.0071 Score=67.24 Aligned_cols=215 Identities=17% Similarity=0.242 Sum_probs=107.4
Q ss_pred HHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHH----cCCCEEEEeCccccchhhhhHHHHHHHHH
Q 005285 181 DLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKE----SGLPFVFASGAEFTDSEKSGAARINEMFS 256 (704)
Q Consensus 181 ~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e----~g~~~v~is~s~~~~~~~~g~~~vr~lF~ 256 (704)
..|..++.|+.+. .++++.||||||||+++.+++.. .| -.++...+.... .. ....
T Consensus 197 ~~L~rl~~fve~~-----------~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L---~~---~~lg 256 (449)
T TIGR02688 197 LLLARLLPLVEPN-----------YNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNI---ST---RQIG 256 (449)
T ss_pred HHHHhhHHHHhcC-----------CcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHH---HH---HHHh
Confidence 3455555665544 58999999999999999998765 24 112222221111 00 1111
Q ss_pred HHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCcc
Q 005285 257 IARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRI 336 (704)
Q Consensus 257 ~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRf 336 (704)
. -....+|+|||+..+.-. .....++.|-..|....-..+........++++++-+|. ..+.-+..
T Consensus 257 ~--v~~~DlLI~DEvgylp~~------~~~~~v~imK~yMesg~fsRG~~~~~a~as~vfvGNi~~--~v~~~~~~---- 322 (449)
T TIGR02688 257 L--VGRWDVVAFDEVATLKFA------KPKELIGILKNYMESGSFTRGDETKSSDASFVFLGNVPL--TSEHMVKN---- 322 (449)
T ss_pred h--hccCCEEEEEcCCCCcCC------chHHHHHHHHHHHHhCceeccceeeeeeeEEEEEcccCC--cchhhcCc----
Confidence 1 133579999999876321 122345556666665444444444444556777765553 22222211
Q ss_pred ceeeeeCCCCHHHHHHHHH---HHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHH
Q 005285 337 DRRLYIGLPDAKQRVQIFD---VHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLD 413 (704)
Q Consensus 337 d~~I~v~~Pd~~eR~~Il~---~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al~ 413 (704)
.++.-|+|..-.=.+++. .++++-.+. .+. .++-....||.-.=+..++.+. | ..++..+++
T Consensus 323 -~~Lf~~lP~~~~DsAflDRiH~yiPGWeip-k~~-~e~~t~~yGl~~DylsE~l~~l-----R-------~~~~~~~~~ 387 (449)
T TIGR02688 323 -SDLFSPLPEFMRDSAFLDRIHGYLPGWEIP-KIR-KEMFSNGYGFVVDYFAEALREL-----R-------EREYADIVD 387 (449)
T ss_pred -ccccccCChhhhhhHHHHhhhccCCCCcCc-cCC-HHHcccCCcchHHHHHHHHHHH-----H-------hhHHHHhhh
Confidence 234446665433234443 234433222 122 2333334566554444444432 2 124445555
Q ss_pred HHHHhccccccchhhhhhhccchhhHHHHHHHHHHHHHHHHHhhcCC
Q 005285 414 KQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPR 460 (704)
Q Consensus 414 ~~~~~~~g~~~~~~~~~~~~~~~~~~~k~~~A~HEaGhalva~~~p~ 460 (704)
+.+. .|.. ...|...|++..--+++-.+.|+
T Consensus 388 ~~~~--l~~~--------------~~~RD~~aV~kt~SgllKLL~P~ 418 (449)
T TIGR02688 388 RHFS--LSPN--------------LNTRDVIAVKKTFSGLMKILFPH 418 (449)
T ss_pred hhee--cCCC--------------cchhhHHHHHHHHHHHHHHhCCC
Confidence 5431 1111 12355667777766666656665
No 290
>PF14516 AAA_35: AAA-like domain
Probab=97.49 E-value=0.0058 Score=66.59 Aligned_cols=173 Identities=15% Similarity=0.149 Sum_probs=93.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH---cCCCEEEEeCccccchh----hh----------------------------hH
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEFTDSE----KS----------------------------GA 248 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e---~g~~~v~is~s~~~~~~----~~----------------------------g~ 248 (704)
..-+.++||..+|||++...+.+. .|...+++++..+.... .. ..
T Consensus 31 G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~ 110 (331)
T PF14516_consen 31 GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSK 110 (331)
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCCh
Confidence 346899999999999999988654 48888888887753210 00 00
Q ss_pred HHHHHHHHHH---hhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCC-CC
Q 005285 249 ARINEMFSIA---RRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNR-PD 324 (704)
Q Consensus 249 ~~vr~lF~~A---k~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~-p~ 324 (704)
......|+.. ....|-||+|||+|.+.... .-....+ .+|..+-...... .....+.+|.+... +.
T Consensus 111 ~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~----~~~~dF~-~~LR~~~~~~~~~-----~~~~~L~li~~~~t~~~ 180 (331)
T PF14516_consen 111 ISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYP----QIADDFF-GLLRSWYEQRKNN-----PIWQKLRLILAGSTEDY 180 (331)
T ss_pred hhHHHHHHHHHHhcCCCCEEEEEechhhhccCc----chHHHHH-HHHHHHHHhcccC-----cccceEEEEEecCcccc
Confidence 1122233321 22568999999999997421 1112222 3333322211100 01122333333222 22
Q ss_pred CCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHH
Q 005285 325 ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNE 390 (704)
Q Consensus 325 ~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~e 390 (704)
.....=.+|=.+...|.++.-+.++...+++.|-. ..... .++.|-..|.|. |.=+..+|..
T Consensus 181 ~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~--~~~~~-~~~~l~~~tgGh-P~Lv~~~~~~ 242 (331)
T PF14516_consen 181 IILDINQSPFNIGQPIELPDFTPEEVQELAQRYGL--EFSQE-QLEQLMDWTGGH-PYLVQKACYL 242 (331)
T ss_pred cccCCCCCCcccccceeCCCCCHHHHHHHHHhhhc--cCCHH-HHHHHHHHHCCC-HHHHHHHHHH
Confidence 21111123322344677787889999999887733 23333 278888888885 5444444443
No 291
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.48 E-value=0.006 Score=68.17 Aligned_cols=124 Identities=15% Similarity=0.172 Sum_probs=72.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccchhhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhH
Q 005285 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRR 285 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~ 285 (704)
-++++||.+||||++++.+.+...-.+++++..+............+. +..+.....+.||||||+.+-+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l~d~~~~-~~~~~~~~~~yifLDEIq~v~~--------- 108 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIELLDLLRA-YIELKEREKSYIFLDEIQNVPD--------- 108 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhHHHHHHH-HHHhhccCCceEEEecccCchh---------
Confidence 789999999999999988888765557777766655443222222222 2222222457999999998732
Q ss_pred HHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHH
Q 005285 286 RATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQI 353 (704)
Q Consensus 286 ~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~I 353 (704)
+...+-...|.... .|++.+++...-....+-.=|||. ..+.+.+.+..+...+
T Consensus 109 --W~~~lk~l~d~~~~-----------~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 109 --WERALKYLYDRGNL-----------DVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLKL 162 (398)
T ss_pred --HHHHHHHHHccccc-----------eEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHhh
Confidence 22333333333221 134444333222222233335796 6788888898888653
No 292
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.47 E-value=0.00056 Score=75.98 Aligned_cols=231 Identities=16% Similarity=0.167 Sum_probs=116.4
Q ss_pred ceecCcccHHHHHHHHHHhCCchhhhhcC--CccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccchhhhhHH
Q 005285 172 EVVLGGDVWDLLDELMIYMGNPMQYYERG--VQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAA 249 (704)
Q Consensus 172 dVvG~~~~k~~L~elv~~l~~p~~~~~~g--~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~~~~g~~ 249 (704)
+|-|.+++|+.|--++-- .+.+-..-| ++..-+|+|.|.||+-||.|.+.+.+-+..-.+..--.+ +.+|.+++
T Consensus 343 EIyGheDVKKaLLLlLVG--gvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGS--SGVGLTAA 418 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVG--GVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGS--SGVGLTAA 418 (721)
T ss_pred hhccchHHHHHHHHHhhC--CCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCC--Cccccchh
Confidence 566888888766544322 122222223 344567999999999999999999887655544321110 11222222
Q ss_pred HHHHHHH--HHh------hCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcC
Q 005285 250 RINEMFS--IAR------RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATN 321 (704)
Q Consensus 250 ~vr~lF~--~Ak------~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN 321 (704)
.+++-.. ... .....|-+|||+|.+... .+..+....++-.-.-...|+. .+.+...-|+||.|
T Consensus 419 VmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~-------DRtAIHEVMEQQTISIaKAGI~-TtLNAR~sILaAAN 490 (721)
T KOG0482|consen 419 VMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDES-------DRTAIHEVMEQQTISIAKAGIN-TTLNARTSILAAAN 490 (721)
T ss_pred hhcCCCCCeeEeccceEEEccCceEeehhhhhhhhh-------hhHHHHHHHHhhhhhhhhhccc-cchhhhHHhhhhcC
Confidence 2221100 000 011358899999998521 1111111111100000111111 11222356778887
Q ss_pred CCC-------------CCcccccCCCccceeee-eCCCCHHHHHHHHH----HHhcCCCccc---cccH------HHHHH
Q 005285 322 RPD-------------ELDLEFVRPGRIDRRLY-IGLPDAKQRVQIFD----VHSAGKQLAE---DVNF------EELVF 374 (704)
Q Consensus 322 ~p~-------------~LD~aLlRpgRfd~~I~-v~~Pd~~eR~~Il~----~~l~~~~l~~---dvdl------~~La~ 374 (704)
... .|+.||++ |||...- .+.||.+.-..+-+ .|.....-.. .++. ..+++
T Consensus 491 PayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak 568 (721)
T KOG0482|consen 491 PAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAK 568 (721)
T ss_pred ccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHh
Confidence 643 48999999 9997443 46777654444333 2222111110 0111 11122
Q ss_pred hcc-----------------------------CCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Q 005285 375 RTV-----------------------------GFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQL 416 (704)
Q Consensus 375 ~t~-----------------------------G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al~~~~ 416 (704)
+-. -.|++-|-.+++-+..+|.-+-...+..+|+.+|+.-+-
T Consensus 569 ~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLme 639 (721)
T KOG0482|consen 569 RKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLME 639 (721)
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHH
Confidence 211 124666667777776666666667777778888776543
No 293
>PRK08118 topology modulation protein; Reviewed
Probab=97.44 E-value=0.00026 Score=69.41 Aligned_cols=33 Identities=27% Similarity=0.524 Sum_probs=30.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCc
Q 005285 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFASGA 238 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s 238 (704)
-|++.||||+||||+|+.|+..++.|++.++.-
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l 35 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDAL 35 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchh
Confidence 589999999999999999999999999877643
No 294
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.39 E-value=0.00089 Score=67.61 Aligned_cols=103 Identities=24% Similarity=0.345 Sum_probs=59.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH-----cCCCE-------------EEEeCccccc----hhhhhHHHHHHHHHHHhhCC
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKE-----SGLPF-------------VFASGAEFTD----SEKSGAARINEMFSIARRNA 262 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e-----~g~~~-------------v~is~s~~~~----~~~~g~~~vr~lF~~Ak~~~ 262 (704)
+.++|.||+|+|||+|+|.++.. .|.++ ..++..+-.. .......++..+++.+....
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~ 105 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKGE 105 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCCC
Confidence 57899999999999999999853 34432 1111111111 11112245667777766568
Q ss_pred CeEEEEccchhhhccCCCCChh-HHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCC
Q 005285 263 PAFVFVDEIDAIAGRHARKDPR-RRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDEL 326 (704)
Q Consensus 263 P~ILfIDEiDal~~~~~~~~~e-~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~L 326 (704)
|.++++||.-+= .+.. .......++..+... +..+|.+|+.++.+
T Consensus 106 p~llllDEp~~g------lD~~~~~~l~~~ll~~l~~~-------------~~tiiivTH~~~~~ 151 (199)
T cd03283 106 PVLFLLDEIFKG------TNSRERQAASAAVLKFLKNK-------------NTIGIISTHDLELA 151 (199)
T ss_pred CeEEEEecccCC------CCHHHHHHHHHHHHHHHHHC-------------CCEEEEEcCcHHHH
Confidence 999999997421 1222 223344566665321 14677778776644
No 295
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.38 E-value=0.0012 Score=80.67 Aligned_cols=186 Identities=15% Similarity=0.168 Sum_probs=105.5
Q ss_pred CccCceEEEEcCCCChHHHH-HHHHHHHcCCCEEEEeCccccchhhhhHHHHHHHHHHHhhC--------------CCeE
Q 005285 201 VQFVRGVLLSGPPGTGKTLF-ARTLAKESGLPFVFASGAEFTDSEKSGAARINEMFSIARRN--------------APAF 265 (704)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~L-AraiA~e~g~~~v~is~s~~~~~~~~g~~~vr~lF~~Ak~~--------------~P~I 265 (704)
....|+++++||||+|||++ .-++-.+.-+.+++++.+.-.... ..++.+-+..... .--|
T Consensus 1491 lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T~----s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lV 1566 (3164)
T COG5245 1491 LNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTMTP----SKLSVLERETEYYPNTGVVRLYPKPVVKDLV 1566 (3164)
T ss_pred HhccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccCCH----HHHHHHHhhceeeccCCeEEEccCcchhheE
Confidence 34568999999999999985 557778888888888866543321 1122221111100 0148
Q ss_pred EEEccchhhhccCCCCChhHHH-HHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccc---eeee
Q 005285 266 VFVDEIDAIAGRHARKDPRRRA-TFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRID---RRLY 341 (704)
Q Consensus 266 LfIDEiDal~~~~~~~~~e~~~-~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd---~~I~ 341 (704)
||.|||. + ++...-.++..- .+.+|+ +-+|+..... ..+..-+++++.+++|.+..... +--|-||- ..++
T Consensus 1567 LFcDeIn-L-p~~~~y~~~~vI~FlR~l~-e~QGfw~s~~-~~wvTI~~i~l~Gacnp~td~gR-v~~~eRf~r~~v~vf 1641 (3164)
T COG5245 1567 LFCDEIN-L-PYGFEYYPPTVIVFLRPLV-ERQGFWSSIA-VSWVTICGIILYGACNPGTDEGR-VKYYERFIRKPVFVF 1641 (3164)
T ss_pred EEeeccC-C-ccccccCCCceEEeeHHHH-Hhcccccchh-hhHhhhcceEEEccCCCCCCccc-CccHHHHhcCceEEE
Confidence 9999999 5 332221111111 122232 3344443221 22344567999999998765320 11112332 3678
Q ss_pred eCCCCHHHHHHHHHHHhcCCCccc-------------cccH--------HHHHHhccCCCHHHHHHHHHHHHHHH
Q 005285 342 IGLPDAKQRVQIFDVHSAGKQLAE-------------DVNF--------EELVFRTVGFSGADIRNLVNESGIMS 395 (704)
Q Consensus 342 v~~Pd~~eR~~Il~~~l~~~~l~~-------------dvdl--------~~La~~t~G~sgadL~~Lv~eA~~~A 395 (704)
+..|.......|...++.+.-+-- .+.+ .-..+...||+|+||..+++..--+|
T Consensus 1642 ~~ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR~lr~i~~ya 1716 (3164)
T COG5245 1642 CCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPRELTRSLRAIFGYA 1716 (3164)
T ss_pred ecCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHHHHHHHHHHhHH
Confidence 899999999999887765432211 1111 11122246899999999988544444
No 296
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.37 E-value=0.0016 Score=67.43 Aligned_cols=40 Identities=38% Similarity=0.594 Sum_probs=32.8
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHH---cCCCEEEEeCcc
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAE 239 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e---~g~~~v~is~s~ 239 (704)
|.+....+|++||||||||+||..++.+ .|.+.++++..+
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 6777788999999999999999877543 477888888665
No 297
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.35 E-value=0.0023 Score=69.31 Aligned_cols=136 Identities=20% Similarity=0.276 Sum_probs=78.9
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccch----------------hhh---h-HHH---HHHHHHH-
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS----------------EKS---G-AAR---INEMFSI- 257 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~----------------~~~---g-~~~---vr~lF~~- 257 (704)
..|..|.|||-.|||||.+.|++-+.++.+.+.++|-+.... .+. + ... +-.+|.+
T Consensus 28 ~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~ 107 (438)
T KOG2543|consen 28 TIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQW 107 (438)
T ss_pred ccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhh
Confidence 467889999999999999999999999999999998763321 000 0 111 2233443
Q ss_pred -HhhC--CCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEE-cCCCCCCcccccCC
Q 005285 258 -ARRN--APAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICA-TNRPDELDLEFVRP 333 (704)
Q Consensus 258 -Ak~~--~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaa-TN~p~~LD~aLlRp 333 (704)
+..+ ....|++|.+|++... + ...++.|+..-.-... ..+.+|.. +-.+..- +.+-
T Consensus 108 ~~~t~~d~~~~liLDnad~lrD~----~---a~ll~~l~~L~el~~~----------~~i~iils~~~~e~~y---~~n~ 167 (438)
T KOG2543|consen 108 PAATNRDQKVFLILDNADALRDM----D---AILLQCLFRLYELLNE----------PTIVIILSAPSCEKQY---LINT 167 (438)
T ss_pred HHhhccCceEEEEEcCHHhhhcc----c---hHHHHHHHHHHHHhCC----------CceEEEEeccccHHHh---hccc
Confidence 2222 2457899999999521 2 2233333332111111 11222222 2221111 1112
Q ss_pred Cccc-eeeeeCCCCHHHHHHHHHHH
Q 005285 334 GRID-RRLYIGLPDAKQRVQIFDVH 357 (704)
Q Consensus 334 gRfd-~~I~v~~Pd~~eR~~Il~~~ 357 (704)
|-++ ..++||.|+.++...|+..-
T Consensus 168 g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 168 GTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred CCCCceEEecCCCCHHHHHHHHhcC
Confidence 3333 37899999999999998754
No 298
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.34 E-value=0.00086 Score=82.47 Aligned_cols=143 Identities=27% Similarity=0.329 Sum_probs=94.4
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccch---hhh-------hHHHHH-HHHHHHhhCCCeEEEEccc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS---EKS-------GAARIN-EMFSIARRNAPAFVFVDEI 271 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~---~~~-------g~~~vr-~lF~~Ak~~~P~ILfIDEi 271 (704)
..+++||-|.||+|||+|..|+|++.|-.++.|+.++-.+- +|. |.-+.+ .=|-.|-+.. .-+++||+
T Consensus 1542 v~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G-~WVlLDEi 1620 (4600)
T COG5271 1542 VGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDG-GWVLLDEI 1620 (4600)
T ss_pred cCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcC-CEEEeehh
Confidence 35789999999999999999999999999999998874432 111 111122 2244444443 46888999
Q ss_pred hhhhccCCCCChhHHHHHHHHHHHhcCCcc---cCCccccccCccEEEEEEcCCCC------CCcccccCCCccceeeee
Q 005285 272 DAIAGRHARKDPRRRATFEALIAQLDGDKE---RTGIDRFSLRQAVIFICATNRPD------ELDLEFVRPGRIDRRLYI 342 (704)
Q Consensus 272 Dal~~~~~~~~~e~~~~ln~LL~~ld~~~~---~~~~~~~~~~~~ViVIaaTN~p~------~LD~aLlRpgRfd~~I~v 342 (704)
.--. ..++..|-.++|-... ..-...|....++.|+||-|.-+ .||..++. ||. +|.+
T Consensus 1621 NLaS----------QSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFs-vV~~ 1687 (4600)
T COG5271 1621 NLAS----------QSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFS-VVKM 1687 (4600)
T ss_pred hhhH----------HHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hhh-eEEe
Confidence 7432 2234444444443211 11111245566789999888644 58889988 995 6888
Q ss_pred CCCCHHHHHHHHHHHhc
Q 005285 343 GLPDAKQRVQIFDVHSA 359 (704)
Q Consensus 343 ~~Pd~~eR~~Il~~~l~ 359 (704)
+..+.+....|......
T Consensus 1688 d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1688 DGLTTDDITHIANKMYP 1704 (4600)
T ss_pred cccccchHHHHHHhhCC
Confidence 88888888888775544
No 299
>PHA02624 large T antigen; Provisional
Probab=97.33 E-value=0.0001 Score=84.46 Aligned_cols=129 Identities=17% Similarity=0.111 Sum_probs=71.8
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccchhhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCC
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHA 279 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~ 279 (704)
|++..+.++|+||||||||+|+.+|++.+|-..+.++++.....+..+ -...-.+++||++-.-.....
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~FwL~-----------pl~D~~~~l~dD~t~~~~~~~ 495 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLNFELG-----------CAIDQFMVVFEDVKGQPADNK 495 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhHHHhh-----------hhhhceEEEeeeccccccccc
Confidence 556667999999999999999999999996667778755533332111 111124777787743221000
Q ss_pred --CCChhHHHHHHHHHHHhcCC-cccCCccccccCc--cEEEEEEcCCCCCCcccccCCCccceeeeeC
Q 005285 280 --RKDPRRRATFEALIAQLDGD-KERTGIDRFSLRQ--AVIFICATNRPDELDLEFVRPGRIDRRLYIG 343 (704)
Q Consensus 280 --~~~~e~~~~ln~LL~~ld~~-~~~~~~~~~~~~~--~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~ 343 (704)
..+.. -.-+..|-..|||. ..+-...+..... -=..|.|||. ..||..+.- ||-.++.|.
T Consensus 496 ~Lp~G~~-~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~~~~~F~ 560 (647)
T PHA02624 496 DLPSGQG-MNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFAKVLDFK 560 (647)
T ss_pred cCCcccc-cchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH--HHHHhcccc
Confidence 00000 01134555667776 2221111111110 0135677775 567777766 887777774
No 300
>PRK05973 replicative DNA helicase; Provisional
Probab=97.31 E-value=0.0025 Score=66.07 Aligned_cols=40 Identities=38% Similarity=0.364 Sum_probs=32.2
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCcc
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAE 239 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~ 239 (704)
|..+...+++.|+||+|||+|+-.+|.+. |.++++++..+
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEe 102 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEY 102 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeC
Confidence 55666678999999999999999886643 88888888665
No 301
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.30 E-value=0.0013 Score=61.37 Aligned_cols=65 Identities=22% Similarity=0.304 Sum_probs=44.3
Q ss_pred ceecCcccHHH-HHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc-----CCCEE--EEeCccccc
Q 005285 172 EVVLGGDVWDL-LDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-----GLPFV--FASGAEFTD 242 (704)
Q Consensus 172 dVvG~~~~k~~-L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~-----g~~~v--~is~s~~~~ 242 (704)
.|.||.-+++. +..+..++.++ .-+.|.-+-|+|+||||||.+++.||+.+ +.+++ ++...+|..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~------~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V~~f~~~~hFP~ 98 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANP------NPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFVHQFIATHHFPH 98 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCC------CCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCCCceeeecccccCCC
Confidence 56788877664 44455677665 22456667799999999999999999974 33444 344445543
No 302
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.30 E-value=0.00083 Score=71.01 Aligned_cols=67 Identities=27% Similarity=0.399 Sum_probs=42.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCC--CEEEEeCcccc---------ch--------hh------hhHHHHHHHHHHHh
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKESGL--PFVFASGAEFT---------DS--------EK------SGAARINEMFSIAR 259 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e~g~--~~v~is~s~~~---------~~--------~~------~g~~~vr~lF~~Ak 259 (704)
.++++.||||+|||+|.+++++...- .-+.+++.++. .. .+ ....+...++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 68999999999999999999987632 11222221111 00 00 01112334666677
Q ss_pred hCCCeEEEEccc
Q 005285 260 RNAPAFVFVDEI 271 (704)
Q Consensus 260 ~~~P~ILfIDEi 271 (704)
...|.||++||+
T Consensus 192 ~~~P~villDE~ 203 (270)
T TIGR02858 192 SMSPDVIVVDEI 203 (270)
T ss_pred hCCCCEEEEeCC
Confidence 789999999996
No 303
>PHA02774 E1; Provisional
Probab=97.27 E-value=0.0019 Score=74.04 Aligned_cols=38 Identities=29% Similarity=0.518 Sum_probs=29.5
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHcCCCEE-EEeC
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFV-FASG 237 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v-~is~ 237 (704)
|.+.-++++|+||||||||+||.+|++.++-.++ ++|.
T Consensus 430 ~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 430 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 3334468999999999999999999999865443 3553
No 304
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.26 E-value=0.0027 Score=62.57 Aligned_cols=90 Identities=28% Similarity=0.367 Sum_probs=55.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccchhhhhHHH--------------------HHHHHHHHhhCCCeE
Q 005285 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAAR--------------------INEMFSIARRNAPAF 265 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~~~~g~~~--------------------vr~lF~~Ak~~~P~I 265 (704)
-+|+.|+||+|||++|..++.+++.++++++....... ....+ +..++... ...+.+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~--e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~~ 79 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDD--EMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGRC 79 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChH--HHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCCE
Confidence 48999999999999999999999888888776543221 11111 22222221 133568
Q ss_pred EEEccchhhhccCCCCC--hhHHHHHHHHHHHhcC
Q 005285 266 VFVDEIDAIAGRHARKD--PRRRATFEALIAQLDG 298 (704)
Q Consensus 266 LfIDEiDal~~~~~~~~--~e~~~~ln~LL~~ld~ 298 (704)
++||-+..+.......+ ......+..++..+..
T Consensus 80 VlID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~~ 114 (170)
T PRK05800 80 VLVDCLTTWVTNLLFEEGEEAIAAEIDALLAALQQ 114 (170)
T ss_pred EEehhHHHHHHHHhcccchHHHHHHHHHHHHHHHc
Confidence 99999998864322111 2223445566666654
No 305
>PRK09354 recA recombinase A; Provisional
Probab=97.26 E-value=0.0015 Score=71.24 Aligned_cols=77 Identities=25% Similarity=0.314 Sum_probs=51.3
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHH---cCCCEEEEeCccccch-h----h------------hhHHHHHHHHHHHh
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEFTDS-E----K------------SGAARINEMFSIAR 259 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e---~g~~~v~is~s~~~~~-~----~------------~g~~~vr~lF~~Ak 259 (704)
|.+..+-++++||||||||+||-.++.+ .|..+++++...-... . + .+...+..+-...+
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 4555667899999999999999987643 4778888887663221 0 0 01111222223345
Q ss_pred hCCCeEEEEccchhhhc
Q 005285 260 RNAPAFVFVDEIDAIAG 276 (704)
Q Consensus 260 ~~~P~ILfIDEiDal~~ 276 (704)
...+.+|+||=+-++.+
T Consensus 136 s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 136 SGAVDLIVVDSVAALVP 152 (349)
T ss_pred cCCCCEEEEeChhhhcc
Confidence 56789999999999975
No 306
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.25 E-value=0.0017 Score=62.74 Aligned_cols=27 Identities=26% Similarity=0.571 Sum_probs=23.4
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHc
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
+.+.-++++|+||+|||+++..+|..+
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHH
Confidence 345679999999999999999999765
No 307
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.24 E-value=0.0014 Score=74.52 Aligned_cols=61 Identities=26% Similarity=0.198 Sum_probs=38.4
Q ss_pred eecCcccHHHHHHHHH--HhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEE
Q 005285 173 VVLGGDVWDLLDELMI--YMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (704)
Q Consensus 173 VvG~~~~k~~L~elv~--~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~i 235 (704)
|-|..++|..+.-.+- .-+++. .+..++.--+|||+|.||||||.+.|.+++-+...++..
T Consensus 451 IyGh~~VK~AvAlaLfGGv~kn~~--~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tT 513 (854)
T KOG0477|consen 451 IYGHEDVKRAVALALFGGVPKNPG--GKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTT 513 (854)
T ss_pred hhchHHHHHHHHHHHhcCCccCCC--CCceeccceeEEEecCCCccHHHHHHHHHhcCcceeEec
Confidence 3466666655443221 122331 112234456799999999999999999999877666543
No 308
>PRK07261 topology modulation protein; Provisional
Probab=97.24 E-value=0.00062 Score=66.98 Aligned_cols=34 Identities=24% Similarity=0.430 Sum_probs=29.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCcc
Q 005285 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFASGAE 239 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~ 239 (704)
-|++.|+||+||||||+.++..++.|++..+.-.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~ 35 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLH 35 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEE
Confidence 3889999999999999999999999988765443
No 309
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.22 E-value=0.0034 Score=64.18 Aligned_cols=98 Identities=22% Similarity=0.247 Sum_probs=60.0
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHH---cCCCEEEEeCccccchhhh--------------------------h---
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEFTDSEKS--------------------------G--- 247 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e---~g~~~v~is~s~~~~~~~~--------------------------g--- 247 (704)
|.+....+++.|+||+|||+++..++.+ .|.++++++..+-.+.... .
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 91 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSKGWDLEDYIDKSLYIVRLDPSDFKTS 91 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHcCCChHHHHhCCeEEEecCHHHHHhh
Confidence 5666677899999999999999988754 3778888887653221000 0
Q ss_pred HHHH-HHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcC
Q 005285 248 AARI-NEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDG 298 (704)
Q Consensus 248 ~~~v-r~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~ 298 (704)
...+ ..+....++..+..++||-+..+..- .+...+....+..++..+..
T Consensus 92 ~~~l~~~~~~~i~~~~~~~vVIDsls~l~~~-~~~~~~~r~~l~~l~~~lk~ 142 (224)
T TIGR03880 92 LNRIKNELPILIKELGASRVVIDPISLLETL-FDDDAERRTELFRFYSSLRE 142 (224)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcChHHHhhh-cCCHHHHHHHHHHHHHHHHh
Confidence 0011 11222334556788999999887221 12233445566677777653
No 310
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.21 E-value=0.002 Score=66.38 Aligned_cols=40 Identities=33% Similarity=0.458 Sum_probs=32.6
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc----CCCEEEEeCcc
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES----GLPFVFASGAE 239 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e~----g~~~v~is~s~ 239 (704)
|..+..-++|.|+||+|||+++..+|... |.+++++++..
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~ 52 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM 52 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC
Confidence 56666778999999999999999886543 88998888654
No 311
>PRK04296 thymidine kinase; Provisional
Probab=97.20 E-value=0.0014 Score=65.53 Aligned_cols=69 Identities=14% Similarity=0.173 Sum_probs=42.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCc-c-------ccchhhhh-----HHHHHHHHHHHh--hCCCeEEE
Q 005285 206 GVLLSGPPGTGKTLFARTLAKES---GLPFVFASGA-E-------FTDSEKSG-----AARINEMFSIAR--RNAPAFVF 267 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s-~-------~~~~~~~g-----~~~vr~lF~~Ak--~~~P~ILf 267 (704)
-.+++||||+|||+++..++..+ |..++.+... + +.+..+.. ......++..++ ...+.+|+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvvi 83 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVL 83 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEE
Confidence 46899999999999998887654 6666655431 1 11111110 112334444443 34567999
Q ss_pred Eccchhh
Q 005285 268 VDEIDAI 274 (704)
Q Consensus 268 IDEiDal 274 (704)
|||++.+
T Consensus 84 IDEaq~l 90 (190)
T PRK04296 84 IDEAQFL 90 (190)
T ss_pred EEccccC
Confidence 9999765
No 312
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.20 E-value=0.002 Score=67.72 Aligned_cols=40 Identities=30% Similarity=0.346 Sum_probs=31.3
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc----CCCEEEEeCcc
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES----GLPFVFASGAE 239 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e~----g~~~v~is~s~ 239 (704)
|.....-++|.||||+|||+++..+|..+ |.++++++..+
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~ 69 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE 69 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc
Confidence 44555678999999999999999886653 77888888643
No 313
>PTZ00202 tuzin; Provisional
Probab=97.20 E-value=0.031 Score=62.38 Aligned_cols=205 Identities=15% Similarity=0.221 Sum_probs=108.8
Q ss_pred CccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccch---
Q 005285 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS--- 243 (704)
Q Consensus 167 ~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~--- 243 (704)
+..-.+.+|.+.....|..++.-+ ....|+-+.|.||+|||||++++.++..++.+.++++.....+.
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~---------d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg~eElLr~ 328 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRL---------DTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRGTEDTLRS 328 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhcc---------CCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCCHHHHHHH
Confidence 344567788886666666555422 22356778999999999999999999999988777776532111
Q ss_pred ----hhh--------hHHHHHHHHHHHhh--CCCeEEE--EccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccc
Q 005285 244 ----EKS--------GAARINEMFSIARR--NAPAFVF--VDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDR 307 (704)
Q Consensus 244 ----~~~--------g~~~vr~lF~~Ak~--~~P~ILf--IDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~ 307 (704)
.|. -...+.+.+..+.. ....||+ |-|=+.| .+..|..+..--...
T Consensus 329 LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l-----------~rvyne~v~la~drr------- 390 (550)
T PTZ00202 329 VVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSL-----------QRVYNEVVALACDRR------- 390 (550)
T ss_pred HHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcH-----------HHHHHHHHHHHccch-------
Confidence 010 01112222222222 2222333 3344333 234444443221100
Q ss_pred cccCccEEEEEEcCCCCCCcc--cccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHH
Q 005285 308 FSLRQAVIFICATNRPDELDL--EFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIR 385 (704)
Q Consensus 308 ~~~~~~ViVIaaTN~p~~LD~--aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~ 385 (704)
-+. +|+- -..+.|.. ..+. |+|. ..+|.-+.++-.+..++.+. .+++..+.. +.|.+..|+.
T Consensus 391 ---~ch-~v~e--vpleslt~~~~~lp--rldf-~~vp~fsr~qaf~y~~h~~d------al~l~~fve-~vgtns~d~d 454 (550)
T PTZ00202 391 ---LCH-VVIE--VPLESLTIANTLLP--RLDF-YLVPNFSRSQAFAYTQHAID------ALSLEHFVD-VVGTNSNDLD 454 (550)
T ss_pred ---hhe-eeee--ehHhhcchhcccCc--ccee-EecCCCCHHHHHHHHhhccc------hHHhhHHHH-hhcCCcccHH
Confidence 011 2221 11222222 2233 8874 56788888877776665433 344555553 5788888998
Q ss_pred HHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Q 005285 386 NLVNESGIMSVRKGHSKIQQQDIVDVLDKQL 416 (704)
Q Consensus 386 ~Lv~eA~~~A~r~~~~~It~~dl~~Al~~~~ 416 (704)
.|+- +..-.+-....-|.+-+.+|+.+..
T Consensus 455 el~a--av~qr~vs~~~yt~~kl~kamrql~ 483 (550)
T PTZ00202 455 ELLA--AVRQRRVSAAEYTNQKLLKAMRQLQ 483 (550)
T ss_pred HHHH--HHHhcCCCHHHHhhHHHHHHHHHHH
Confidence 8874 2222122223346677777776643
No 314
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.17 E-value=0.0011 Score=73.06 Aligned_cols=110 Identities=22% Similarity=0.256 Sum_probs=61.3
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHc----C-CCEEEEeCccccchh-----------hh------hHHHHHHHHHHHh
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKES----G-LPFVFASGAEFTDSE-----------KS------GAARINEMFSIAR 259 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~----g-~~~v~is~s~~~~~~-----------~~------g~~~vr~lF~~Ak 259 (704)
.....++|.||+|+|||+++..+|..+ | ..+..+++..+.... +. ....+......
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~-- 212 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE-- 212 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH--
Confidence 345678999999999999999998753 3 345555544432100 00 00112222222
Q ss_pred hCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCcccc
Q 005285 260 RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEF 330 (704)
Q Consensus 260 ~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aL 330 (704)
.....+|+||...... .+..+...+..+..... ..+.++|+-+|+..+.++..+
T Consensus 213 l~~~DlVLIDTaG~~~---------~d~~l~e~La~L~~~~~--------~~~~lLVLsAts~~~~l~evi 266 (374)
T PRK14722 213 LRNKHMVLIDTIGMSQ---------RDRTVSDQIAMLHGADT--------PVQRLLLLNATSHGDTLNEVV 266 (374)
T ss_pred hcCCCEEEEcCCCCCc---------ccHHHHHHHHHHhccCC--------CCeEEEEecCccChHHHHHHH
Confidence 2345799999985321 12235555555544221 112367777787777666443
No 315
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.005 Score=73.98 Aligned_cols=160 Identities=18% Similarity=0.198 Sum_probs=105.3
Q ss_pred ccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc----------CCCEEEEeCcc
Q 005285 170 YKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES----------GLPFVFASGAE 239 (704)
Q Consensus 170 f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~----------g~~~v~is~s~ 239 (704)
++-|+|. ..++++.+++.|-.. ..++-+|.|.||+|||.++.-+|+.. +..++.++...
T Consensus 185 ldPvigr--~deeirRvi~iL~Rr---------tk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~ 253 (898)
T KOG1051|consen 185 LDPVIGR--HDEEIRRVIEILSRK---------TKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGS 253 (898)
T ss_pred CCCccCC--chHHHHHHHHHHhcc---------CCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhh
Confidence 5667776 224455555555443 23678999999999999999998754 34566777665
Q ss_pred ccch---hhhhHHHHHHHHHHHh-hCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEE
Q 005285 240 FTDS---EKSGAARINEMFSIAR-RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVI 315 (704)
Q Consensus 240 ~~~~---~~~g~~~vr~lF~~Ak-~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~Vi 315 (704)
+... -+....+++.+.+.+. .....||||||++-+.+.... .......| +|..+-. +.++-
T Consensus 254 l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~--~~~~d~~n-lLkp~L~------------rg~l~ 318 (898)
T KOG1051|consen 254 LVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN--YGAIDAAN-LLKPLLA------------RGGLW 318 (898)
T ss_pred cccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc--chHHHHHH-hhHHHHh------------cCCeE
Confidence 4433 3566788999988887 456679999999999754322 11222223 3333322 12378
Q ss_pred EEEEcCCC-----CCCcccccCCCccceeeeeCCCCHHHHHHHHHHHh
Q 005285 316 FICATNRP-----DELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHS 358 (704)
Q Consensus 316 VIaaTN~p-----~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l 358 (704)
+|+||..- -.-||++-| ||+ .+.++.|+.+.-..||....
T Consensus 319 ~IGatT~e~Y~k~iekdPalEr--rw~-l~~v~~pS~~~~~~iL~~l~ 363 (898)
T KOG1051|consen 319 CIGATTLETYRKCIEKDPALER--RWQ-LVLVPIPSVENLSLILPGLS 363 (898)
T ss_pred EEecccHHHHHHHHhhCcchhh--Ccc-eeEeccCcccchhhhhhhhh
Confidence 88876431 135899999 997 57899999877666766443
No 316
>PRK13947 shikimate kinase; Provisional
Probab=97.16 E-value=0.00038 Score=67.85 Aligned_cols=31 Identities=29% Similarity=0.439 Sum_probs=28.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCEEEEe
Q 005285 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~g~~~v~is 236 (704)
+|+|.|+||||||++++.+|+.+|.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5999999999999999999999999997543
No 317
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.15 E-value=0.0029 Score=67.65 Aligned_cols=136 Identities=21% Similarity=0.312 Sum_probs=80.2
Q ss_pred CceEEEEcCCCChHHHHHHHH---HHHcCCCEEEEeCccccch----------------------hhhhHHHHHHHHHHH
Q 005285 204 VRGVLLSGPPGTGKTLFARTL---AKESGLPFVFASGAEFTDS----------------------EKSGAARINEMFSIA 258 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LArai---A~e~g~~~v~is~s~~~~~----------------------~~~g~~~vr~lF~~A 258 (704)
...|++.||.|+|||.+.-.. +++.|-+|+.+...-+... ++..+..+..+....
T Consensus 49 snsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L 128 (408)
T KOG2228|consen 49 SNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLALELNRIVKSFGSFTENLSKLLEAL 128 (408)
T ss_pred CCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHHH
Confidence 467999999999999876543 3477888876654433221 111112222333322
Q ss_pred hh-----CCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCC---cccc
Q 005285 259 RR-----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDEL---DLEF 330 (704)
Q Consensus 259 k~-----~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~L---D~aL 330 (704)
+. ..+.|.++||||-+++. .+...+..|+..-. +.+-++.||+.|.+.+.+ ...+
T Consensus 129 ~~~~~~t~~~ViFIldEfDlf~~h------~rQtllYnlfDisq-----------s~r~Piciig~Ttrld~lE~LEKRV 191 (408)
T KOG2228|consen 129 KKGDETTSGKVIFILDEFDLFAPH------SRQTLLYNLFDISQ-----------SARAPICIIGVTTRLDILELLEKRV 191 (408)
T ss_pred hcCCCCCCceEEEEeehhhccccc------hhhHHHHHHHHHHh-----------hcCCCeEEEEeeccccHHHHHHHHH
Confidence 22 12345566899988743 12223333333322 123458999999887765 4566
Q ss_pred cCCCcccee-eeeCCC-CHHHHHHHHHHHh
Q 005285 331 VRPGRIDRR-LYIGLP-DAKQRVQIFDVHS 358 (704)
Q Consensus 331 lRpgRfd~~-I~v~~P-d~~eR~~Il~~~l 358 (704)
.+ ||... |+++++ ...+-.++++..+
T Consensus 192 KS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 192 KS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred Hh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 66 99654 666554 5788888888765
No 318
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.15 E-value=0.0039 Score=65.53 Aligned_cols=40 Identities=25% Similarity=0.444 Sum_probs=32.2
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHH---cCCCEEEEeCcc
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAE 239 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e---~g~~~v~is~s~ 239 (704)
|.+....++++||||||||+||..+|.+ .|-++++++..+
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVES 74 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 5667777899999999999999988653 367888887653
No 319
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.13 E-value=0.00034 Score=65.76 Aligned_cols=29 Identities=48% Similarity=0.838 Sum_probs=24.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHcCCCEEEEeC
Q 005285 207 VLLSGPPGTGKTLFARTLAKESGLPFVFASG 237 (704)
Q Consensus 207 vLL~GPPGTGKT~LAraiA~e~g~~~v~is~ 237 (704)
|+++||||+|||++|+.+++.++ ...++.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~ 30 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQ 30 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeH
Confidence 78999999999999999999998 334443
No 320
>PRK03839 putative kinase; Provisional
Probab=97.12 E-value=0.00039 Score=68.64 Aligned_cols=31 Identities=32% Similarity=0.574 Sum_probs=27.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCEEEEe
Q 005285 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~g~~~v~is 236 (704)
-|+|.|+||+||||+++.+|+.++.+++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3899999999999999999999999987643
No 321
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.12 E-value=0.0019 Score=63.98 Aligned_cols=117 Identities=17% Similarity=0.139 Sum_probs=65.9
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCCC-------------EEEEeCccccchh-------------hhhHHHHHHHH
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLP-------------FVFASGAEFTDSE-------------KSGAARINEMF 255 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~g~~-------------~v~is~s~~~~~~-------------~~g~~~vr~lF 255 (704)
+...-+.|.||.|+|||||.+++....|.. +.++.-.++.... ..+..+.+-.+
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~l 98 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQRVKL 98 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHHHHH
Confidence 344568899999999999999997543321 2221100011100 11223455556
Q ss_pred HHHhhCC--CeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCC
Q 005285 256 SIARRNA--PAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRP 333 (704)
Q Consensus 256 ~~Ak~~~--P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRp 333 (704)
..|-... |.++++||--+= -+......+.+++..+... +..||.+|+.++.+ +
T Consensus 99 aral~~~~~p~llLlDEPt~~------LD~~~~~~l~~~l~~~~~~-------------g~tvIivSH~~~~~-----~- 153 (176)
T cd03238 99 ASELFSEPPGTLFILDEPSTG------LHQQDINQLLEVIKGLIDL-------------GNTVILIEHNLDVL-----S- 153 (176)
T ss_pred HHHHhhCCCCCEEEEeCCccc------CCHHHHHHHHHHHHHHHhC-------------CCEEEEEeCCHHHH-----H-
Confidence 6676778 999999997543 2444444555555554211 13566677766533 2
Q ss_pred CccceeeeeCC
Q 005285 334 GRIDRRLYIGL 344 (704)
Q Consensus 334 gRfd~~I~v~~ 344 (704)
.+|+.+.+..
T Consensus 154 -~~d~i~~l~~ 163 (176)
T cd03238 154 -SADWIIDFGP 163 (176)
T ss_pred -hCCEEEEECC
Confidence 4566666643
No 322
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.12 E-value=0.00062 Score=71.68 Aligned_cols=98 Identities=20% Similarity=0.301 Sum_probs=59.4
Q ss_pred CCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC---EEEEeC-ccc
Q 005285 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP---FVFASG-AEF 240 (704)
Q Consensus 165 ~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~---~v~is~-s~~ 240 (704)
....+++++.-.+...+.+.+++... .+...++++.||+|+|||++++++..+..-. ++.+.- .++
T Consensus 98 ~~~~sle~l~~~~~~~~~~~~~l~~~----------v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 98 SKPFSLEDLGESGSIPEEIAEFLRSA----------VRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp SS--CHCCCCHTHHCHHHHHHHHHHC----------HHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred cccccHhhccCchhhHHHHHHHHhhc----------cccceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 34567888766555555555544432 1234679999999999999999999876433 333331 121
Q ss_pred cc-------hhh-hhHHHHHHHHHHHhhCCCeEEEEccch
Q 005285 241 TD-------SEK-SGAARINEMFSIARRNAPAFVFVDEID 272 (704)
Q Consensus 241 ~~-------~~~-~g~~~vr~lF~~Ak~~~P~ILfIDEiD 272 (704)
.- ... .......+++..+....|.+|+|+|+-
T Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 168 RLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp --SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred eecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 10 000 123346778888888999999999995
No 323
>PRK00625 shikimate kinase; Provisional
Probab=97.11 E-value=0.00045 Score=68.21 Aligned_cols=31 Identities=42% Similarity=0.638 Sum_probs=28.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCEEEEe
Q 005285 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~g~~~v~is 236 (704)
.|+|.|.||+|||++++.+|+.+|.+|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999998765
No 324
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.11 E-value=0.00044 Score=65.89 Aligned_cols=31 Identities=48% Similarity=0.671 Sum_probs=27.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCEEEEe
Q 005285 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~g~~~v~is 236 (704)
+|+|+|+||+|||++|+.+|..+|.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4899999999999999999999999988544
No 325
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.09 E-value=0.00093 Score=69.78 Aligned_cols=75 Identities=27% Similarity=0.454 Sum_probs=51.3
Q ss_pred CccCceEEEEcCCCChHHHHHHHHHH------HcCCCEEEEeCccccchhhhhH--HHHHHHHHHHh--------hCCCe
Q 005285 201 VQFVRGVLLSGPPGTGKTLFARTLAK------ESGLPFVFASGAEFTDSEKSGA--ARINEMFSIAR--------RNAPA 264 (704)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAraiA~------e~g~~~v~is~s~~~~~~~~g~--~~vr~lF~~Ak--------~~~P~ 264 (704)
++....+||.||.|.||+.||+.|-. .+.-+|+.++|..+......++ ..++..|.-|+ .....
T Consensus 205 ~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadgg 284 (531)
T COG4650 205 IRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGG 284 (531)
T ss_pred hhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCc
Confidence 44456699999999999999999843 4577999999998765422111 11333333222 12346
Q ss_pred EEEEccchhhh
Q 005285 265 FVFVDEIDAIA 275 (704)
Q Consensus 265 ILfIDEiDal~ 275 (704)
++|+|||..++
T Consensus 285 mlfldeigelg 295 (531)
T COG4650 285 MLFLDEIGELG 295 (531)
T ss_pred eEehHhhhhcC
Confidence 99999999885
No 326
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.08 E-value=0.00053 Score=78.47 Aligned_cols=64 Identities=17% Similarity=0.235 Sum_probs=42.9
Q ss_pred ccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc-CCCEEEEeC
Q 005285 168 SMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-GLPFVFASG 237 (704)
Q Consensus 168 ~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~-g~~~v~is~ 237 (704)
.-|+|+.|.+++++.+ +++++..- ..++ ...+.++|.||||+|||+||++||+.+ ..|++.+.+
T Consensus 73 ~fF~d~yGlee~ieri---v~~l~~Aa--~gl~-~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 73 PAFEEFYGMEEAIEQI---VSYFRHAA--QGLE-EKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred cchhcccCcHHHHHHH---HHHHHHHH--HhcC-CCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 3588999998766544 44443221 1111 233578899999999999999999865 346666655
No 327
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.08 E-value=0.0023 Score=62.34 Aligned_cols=106 Identities=21% Similarity=0.185 Sum_probs=64.7
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCC--CEEEEeCccccch---------h-----hhhHHHHHHHHHHHhhCCCeE
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKESGL--PFVFASGAEFTDS---------E-----KSGAARINEMFSIARRNAPAF 265 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~g~--~~v~is~s~~~~~---------~-----~~g~~~vr~lF~~Ak~~~P~I 265 (704)
++...+.|.||+|+|||+|.+.+++.... --+.+++.+.... . ..+-.+-+-.+..|-...|.|
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~i 103 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARL 103 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCE
Confidence 34567899999999999999999986421 1123332221110 0 122334556677777788999
Q ss_pred EEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCC
Q 005285 266 VFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDEL 326 (704)
Q Consensus 266 LfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~L 326 (704)
+++||--+= -+......+..++.++... +..+|.+|++.+.+
T Consensus 104 lllDEP~~~------LD~~~~~~l~~~l~~~~~~-------------~~tiii~sh~~~~~ 145 (163)
T cd03216 104 LILDEPTAA------LTPAEVERLFKVIRRLRAQ-------------GVAVIFISHRLDEV 145 (163)
T ss_pred EEEECCCcC------CCHHHHHHHHHHHHHHHHC-------------CCEEEEEeCCHHHH
Confidence 999997532 2445555666666665321 13566667765543
No 328
>PRK06762 hypothetical protein; Provisional
Probab=97.07 E-value=0.0013 Score=63.97 Aligned_cols=38 Identities=24% Similarity=0.369 Sum_probs=31.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCcccc
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~ 241 (704)
|+-++|+|+||+|||++|+.++..++..++.++...+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r 39 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR 39 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence 56789999999999999999999987667666655443
No 329
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.07 E-value=0.0028 Score=68.59 Aligned_cols=40 Identities=23% Similarity=0.221 Sum_probs=32.5
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---------CCCEEEEeCcc
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---------GLPFVFASGAE 239 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e~---------g~~~v~is~s~ 239 (704)
|++...-++++||||+|||+++..+|..+ +..+++++..+
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 56667778999999999999999998653 34788888766
No 330
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.07 E-value=0.00042 Score=65.87 Aligned_cols=32 Identities=41% Similarity=0.771 Sum_probs=28.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCCCEEEEe
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is 236 (704)
.+||++|-||||||+++.++|...|.+++.++
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 47999999999999999999999999987653
No 331
>PLN02200 adenylate kinase family protein
Probab=97.07 E-value=0.00069 Score=70.18 Aligned_cols=41 Identities=17% Similarity=0.239 Sum_probs=33.6
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccc
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~ 242 (704)
+.+.|.-+++.||||+|||++|+.+|..+|++ .++++++..
T Consensus 39 ~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR 79 (234)
T PLN02200 39 KEKTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLR 79 (234)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHH
Confidence 34567789999999999999999999999876 466666654
No 332
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.06 E-value=0.00086 Score=67.53 Aligned_cols=84 Identities=23% Similarity=0.292 Sum_probs=46.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHH---HcCCCEEEEeCccccchh-----hhhHHHHHHHHHHHh---------hCCCeEEE
Q 005285 205 RGVLLSGPPGTGKTLFARTLAK---ESGLPFVFASGAEFTDSE-----KSGAARINEMFSIAR---------RNAPAFVF 267 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~---e~g~~~v~is~s~~~~~~-----~~g~~~vr~lF~~Ak---------~~~P~ILf 267 (704)
+.+++.||||||||++++.++. ..|..++.+....-.... +.....+..++.... .....+|+
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vli 98 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLI 98 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEE
Confidence 4688899999999999999865 346777777654422211 111111222222111 12347999
Q ss_pred EccchhhhccCCCCChhHHHHHHHHHHHhcC
Q 005285 268 VDEIDAIAGRHARKDPRRRATFEALIAQLDG 298 (704)
Q Consensus 268 IDEiDal~~~~~~~~~e~~~~ln~LL~~ld~ 298 (704)
|||+-.+.. ..+..|+.....
T Consensus 99 VDEasmv~~----------~~~~~ll~~~~~ 119 (196)
T PF13604_consen 99 VDEASMVDS----------RQLARLLRLAKK 119 (196)
T ss_dssp ESSGGG-BH----------HHHHHHHHHS-T
T ss_pred EecccccCH----------HHHHHHHHHHHh
Confidence 999988742 245666665544
No 333
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.06 E-value=0.0023 Score=61.05 Aligned_cols=89 Identities=18% Similarity=0.176 Sum_probs=51.7
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCC--CEEEEeCccccch-h-hhhHHHHHHHHHHHhhCCCeEEEEccchhhhcc
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKESGL--PFVFASGAEFTDS-E-KSGAARINEMFSIARRNAPAFVFVDEIDAIAGR 277 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~g~--~~v~is~s~~~~~-~-~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~ 277 (704)
+....+.|.||+|+|||+|++++++.... --+.+++..-... . ..+-.+-+-.+..|-...|.++++||-.+=.
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~~~rv~laral~~~p~illlDEP~~~L-- 101 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHL-- 101 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCC--
Confidence 34566889999999999999999986521 1112221100000 0 1222234444566667789999999976432
Q ss_pred CCCCChhHHHHHHHHHHHh
Q 005285 278 HARKDPRRRATFEALIAQL 296 (704)
Q Consensus 278 ~~~~~~e~~~~ln~LL~~l 296 (704)
+......+..++.++
T Consensus 102 ----D~~~~~~l~~~l~~~ 116 (144)
T cd03221 102 ----DLESIEALEEALKEY 116 (144)
T ss_pred ----CHHHHHHHHHHHHHc
Confidence 334444455555554
No 334
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.05 E-value=0.0018 Score=67.74 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=23.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCC
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESGL 230 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g~ 230 (704)
..-++|.||+|+|||++++.+++....
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 345899999999999999999987644
No 335
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.05 E-value=0.00049 Score=67.81 Aligned_cols=34 Identities=24% Similarity=0.457 Sum_probs=27.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccc
Q 005285 207 VLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (704)
Q Consensus 207 vLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~ 242 (704)
|++.||||+|||++|+.+|...|++. ++.+++..
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~--is~~d~lr 35 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTH--LSAGDLLR 35 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE--EECChHHH
Confidence 78999999999999999999998654 55555543
No 336
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.05 E-value=0.0064 Score=59.84 Aligned_cols=92 Identities=22% Similarity=0.266 Sum_probs=55.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccch-hhhhH--------------HHHHHHHHHHhhC-CCeEEEEcc
Q 005285 207 VLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-EKSGA--------------ARINEMFSIARRN-APAFVFVDE 270 (704)
Q Consensus 207 vLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~-~~~g~--------------~~vr~lF~~Ak~~-~P~ILfIDE 270 (704)
+|+.|+||+|||++|..++...+.+++++....-.+. ...-. +...++.+..... .+.+|+||-
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~~VLIDc 81 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGDVVLIDC 81 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCCEEEEEc
Confidence 6899999999999999999888888888876543322 11000 0011222222222 467999999
Q ss_pred chhhhccCCCC-C----hhHHHHHHHHHHHhcC
Q 005285 271 IDAIAGRHARK-D----PRRRATFEALIAQLDG 298 (704)
Q Consensus 271 iDal~~~~~~~-~----~e~~~~ln~LL~~ld~ 298 (704)
+..+...-... + ......+..|+..+..
T Consensus 82 lt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~ 114 (169)
T cd00544 82 LTLWVTNLLFADLEEWEAAIADEIDALLAAVRN 114 (169)
T ss_pred HhHHHHHhCCCccccchhHHHHHHHHHHHHHHc
Confidence 99886543221 1 1123445556666654
No 337
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.05 E-value=0.0041 Score=63.45 Aligned_cols=111 Identities=15% Similarity=0.186 Sum_probs=59.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHH-----HcCCCEEE--------------EeCcccc-chhhhhHHHHHHHH-HHHhhCC
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAK-----ESGLPFVF--------------ASGAEFT-DSEKSGAARINEMF-SIARRNA 262 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~-----e~g~~~v~--------------is~s~~~-~~~~~g~~~vr~lF-~~Ak~~~ 262 (704)
++.++|+||.|+|||++.|.++. ..|..+.. +...+-. .........++.+. ..+....
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~ 108 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATR 108 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCC
Confidence 47799999999999999999983 34543211 1111100 00111122233222 2233456
Q ss_pred CeEEEEccchhhhccCCCCCh-hHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCcccc
Q 005285 263 PAFVFVDEIDAIAGRHARKDP-RRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEF 330 (704)
Q Consensus 263 P~ILfIDEiDal~~~~~~~~~-e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aL 330 (704)
|++++|||+.+- .+. +....+..++..+-.... .+..+|++|+..+.+....
T Consensus 109 ~slvllDE~~~g------td~~~~~~~~~ail~~l~~~~~----------~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 109 RSLVLIDEFGKG------TDTEDGAGLLIATIEHLLKRGP----------ECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred CcEEEeccccCC------CCHHHHHHHHHHHHHHHHhcCC----------CCcEEEEEcChHHHHHhhh
Confidence 899999998632 222 233444555555532100 0136777888776655443
No 338
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.02 E-value=0.0036 Score=61.71 Aligned_cols=105 Identities=19% Similarity=0.193 Sum_probs=61.6
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCC--CEEEEeCcc--------------------ccc--------hhhhhHHHH
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKESGL--PFVFASGAE--------------------FTD--------SEKSGAARI 251 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~g~--~~v~is~s~--------------------~~~--------~~~~g~~~v 251 (704)
.....+.|.||+|+|||+|++.+++.... --+.+++.+ +.. ....+-.+-
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~q 105 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQ 105 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHHH
Confidence 34567899999999999999999986421 111122111 000 001122334
Q ss_pred HHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCC
Q 005285 252 NEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDEL 326 (704)
Q Consensus 252 r~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~L 326 (704)
+-.+..|-...|.++++||--+=. +......+.+++..+.. . ..+|.+|+.++.+
T Consensus 106 rv~laral~~~p~~lllDEP~~~L------D~~~~~~l~~~l~~~~~---~-----------~tii~~sh~~~~~ 160 (178)
T cd03247 106 RLALARILLQDAPIVLLDEPTVGL------DPITERQLLSLIFEVLK---D-----------KTLIWITHHLTGI 160 (178)
T ss_pred HHHHHHHHhcCCCEEEEECCcccC------CHHHHHHHHHHHHHHcC---C-----------CEEEEEecCHHHH
Confidence 555667777889999999976432 34445556666665531 1 2556667766544
No 339
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.02 E-value=0.0034 Score=60.46 Aligned_cols=106 Identities=24% Similarity=0.310 Sum_probs=62.3
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCC--EEEEeCccccc--------h--h---hhhHHHHHHHHHHHhhCCCeEEE
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESGLP--FVFASGAEFTD--------S--E---KSGAARINEMFSIARRNAPAFVF 267 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g~~--~v~is~s~~~~--------~--~---~~g~~~vr~lF~~Ak~~~P~ILf 267 (704)
+...+.|.||+|+|||+|++++++..... -+.+++..... . + ..+-.+.+-.+..+-...|.+++
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~i 103 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLLL 103 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEEE
Confidence 34578999999999999999999875421 23333322211 0 0 11223344445566666789999
Q ss_pred EccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCc
Q 005285 268 VDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELD 327 (704)
Q Consensus 268 IDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD 327 (704)
+||..+= -+......+..++..+... +..++.+|+..+.+.
T Consensus 104 lDEp~~~------lD~~~~~~l~~~l~~~~~~-------------~~tii~~sh~~~~~~ 144 (157)
T cd00267 104 LDEPTSG------LDPASRERLLELLRELAEE-------------GRTVIIVTHDPELAE 144 (157)
T ss_pred EeCCCcC------CCHHHHHHHHHHHHHHHHC-------------CCEEEEEeCCHHHHH
Confidence 9998643 2334444555555554321 125566777666544
No 340
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.01 E-value=0.0034 Score=67.82 Aligned_cols=100 Identities=13% Similarity=0.118 Sum_probs=57.9
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHH---------cCCCEEEEeCccc-cch-h-------hh---------------
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE---------SGLPFVFASGAEF-TDS-E-------KS--------------- 246 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e---------~g~~~v~is~s~~-~~~-~-------~~--------------- 246 (704)
|++...-+.++||||+|||.|+..+|-. .+..+++++...- ... . +.
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~~ 171 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARAY 171 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecCC
Confidence 4556667889999999999999988742 2457788886652 110 0 00
Q ss_pred -h---HHHHHHHHHHHhhCCCeEEEEccchhhhccCCC---CChhHHHHHHHHHHHhcCC
Q 005285 247 -G---AARINEMFSIARRNAPAFVFVDEIDAIAGRHAR---KDPRRRATFEALIAQLDGD 299 (704)
Q Consensus 247 -g---~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~---~~~e~~~~ln~LL~~ld~~ 299 (704)
. ...+..+-.......+.+|+||-|-++...... .-.++.+.+++++..|...
T Consensus 172 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r~~~~~~g~~~~r~~~l~~~~~~L~~l 231 (313)
T TIGR02238 172 TSEHQMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSGRGELSERQQKLAQMLSRLNKI 231 (313)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEEcchHhhhhhccCccchHHHHHHHHHHHHHHHHH
Confidence 0 011122222233456889999999988643211 1223334456665555443
No 341
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.01 E-value=0.0011 Score=66.76 Aligned_cols=66 Identities=21% Similarity=0.344 Sum_probs=41.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCC----CEEEEeC-cccc--------ch--hhhhHHHHHHHHHHHhhCCCeEEEEcc
Q 005285 206 GVLLSGPPGTGKTLFARTLAKESGL----PFVFASG-AEFT--------DS--EKSGAARINEMFSIARRNAPAFVFVDE 270 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~g~----~~v~is~-s~~~--------~~--~~~g~~~vr~lF~~Ak~~~P~ILfIDE 270 (704)
-+++.||+|+|||++++++++.... .++.+.. .++. .. .+.....+...+..+....|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 3689999999999999999887642 2222211 1111 00 111112244556666677899999999
Q ss_pred c
Q 005285 271 I 271 (704)
Q Consensus 271 i 271 (704)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 8
No 342
>PRK13949 shikimate kinase; Provisional
Probab=97.00 E-value=0.00063 Score=66.89 Aligned_cols=32 Identities=38% Similarity=0.606 Sum_probs=29.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCCCEEEEe
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is 236 (704)
+.|+|.|+||+|||++++.+|+.++.+++..+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 36999999999999999999999999988654
No 343
>PRK14532 adenylate kinase; Provisional
Probab=96.99 E-value=0.00062 Score=67.58 Aligned_cols=36 Identities=31% Similarity=0.554 Sum_probs=29.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccch
Q 005285 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS 243 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~ 243 (704)
.++|.||||+|||++|+.+|+.+|.+++ +..++...
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i--s~~d~lr~ 37 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL--STGDMLRA 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE--eCcHHHHH
Confidence 4899999999999999999999987664 55555443
No 344
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.99 E-value=0.0048 Score=63.72 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=20.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e 227 (704)
.--|-|.||+|||||||.+.+|+-
T Consensus 29 GEfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345889999999999999999984
No 345
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.99 E-value=0.0041 Score=67.01 Aligned_cols=40 Identities=25% Similarity=0.284 Sum_probs=32.3
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---------CCCEEEEeCcc
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---------GLPFVFASGAE 239 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e~---------g~~~v~is~s~ 239 (704)
|++...-++++||||+|||+|+-.+|..+ +-..++++..+
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 56666778999999999999999998663 23788888776
No 346
>PRK04328 hypothetical protein; Provisional
Probab=96.98 E-value=0.0065 Score=63.47 Aligned_cols=40 Identities=40% Similarity=0.596 Sum_probs=31.2
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHH---cCCCEEEEeCcc
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAE 239 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e---~g~~~v~is~s~ 239 (704)
|.+....+|++||||||||+|+..++.+ .|-+.++++..+
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee 61 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE 61 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC
Confidence 5666778899999999999999887543 477888877644
No 347
>PRK14531 adenylate kinase; Provisional
Probab=96.98 E-value=0.00074 Score=67.04 Aligned_cols=36 Identities=33% Similarity=0.571 Sum_probs=29.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccc
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~ 242 (704)
+-|+++||||+|||++++.+|..+|++++ ++.++..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~i--s~gd~lr 38 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHL--STGDLLR 38 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeE--ecccHHH
Confidence 45999999999999999999999998865 4445543
No 348
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.97 E-value=0.0064 Score=59.55 Aligned_cols=106 Identities=20% Similarity=0.276 Sum_probs=61.4
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCC--CEEEEeCcccc---------------------c-hh----hhhHHHHHH
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKESGL--PFVFASGAEFT---------------------D-SE----KSGAARINE 253 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~g~--~~v~is~s~~~---------------------~-~~----~~g~~~vr~ 253 (704)
.+..-+.|.||+|+|||+|.+.+++.... --+.+++.... . .. -.+-.+-+-
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~rl 105 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQRI 105 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHHHH
Confidence 34556899999999999999999986421 01122221110 0 00 111223344
Q ss_pred HHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCc
Q 005285 254 MFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELD 327 (704)
Q Consensus 254 lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD 327 (704)
.+..|-...|.++++||--+= -+......+..++..+.. . ..+|.+|+.++.+.
T Consensus 106 ~la~al~~~p~llllDEP~~g------LD~~~~~~l~~~l~~~~~---~-----------~tii~~sh~~~~~~ 159 (171)
T cd03228 106 AIARALLRDPPILILDEATSA------LDPETEALILEALRALAK---G-----------KTVIVIAHRLSTIR 159 (171)
T ss_pred HHHHHHhcCCCEEEEECCCcC------CCHHHHHHHHHHHHHhcC---C-----------CEEEEEecCHHHHH
Confidence 456666778999999996532 233444555566655532 1 35667777766553
No 349
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.97 E-value=0.0011 Score=65.08 Aligned_cols=32 Identities=38% Similarity=0.588 Sum_probs=29.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCCCEEEEe
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is 236 (704)
+++.|.|++|+||||+.|++|+.++.+|+-.+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 57999999999999999999999999998543
No 350
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.96 E-value=0.014 Score=71.73 Aligned_cols=151 Identities=18% Similarity=0.275 Sum_probs=82.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccch---h----hhh------------------------HHHHH
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS---E----KSG------------------------AARIN 252 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~---~----~~g------------------------~~~vr 252 (704)
.+-++++||+|.|||+++...+...+ ++.-++....... + ... ...+.
T Consensus 32 ~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (903)
T PRK04841 32 YRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFA 110 (903)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHH
Confidence 45689999999999999999987777 6665555321100 0 000 01122
Q ss_pred HHHHHHhh-CCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCcc-cc
Q 005285 253 EMFSIARR-NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDL-EF 330 (704)
Q Consensus 253 ~lF~~Ak~-~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~-aL 330 (704)
.++..... ..|.+|+||+++.+- ++.....+..|+..+.. ++.+|.++...-.++- .+
T Consensus 111 ~~~~~l~~~~~~~~lvlDD~h~~~------~~~~~~~l~~l~~~~~~--------------~~~lv~~sR~~~~~~~~~l 170 (903)
T PRK04841 111 QLFIELADWHQPLYLVIDDYHLIT------NPEIHEAMRFFLRHQPE--------------NLTLVVLSRNLPPLGIANL 170 (903)
T ss_pred HHHHHHhcCCCCEEEEEeCcCcCC------ChHHHHHHHHHHHhCCC--------------CeEEEEEeCCCCCCchHhH
Confidence 23333322 678999999999873 22333455555554322 2344445533111211 11
Q ss_pred cCCCccceeeeeC----CCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCC
Q 005285 331 VRPGRIDRRLYIG----LPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFS 380 (704)
Q Consensus 331 lRpgRfd~~I~v~----~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~s 380 (704)
... +..+.+. .-+.++-.+++...+.. .+. ..+...+...|.|..
T Consensus 171 ~~~---~~~~~l~~~~l~f~~~e~~~ll~~~~~~-~~~-~~~~~~l~~~t~Gwp 219 (903)
T PRK04841 171 RVR---DQLLEIGSQQLAFDHQEAQQFFDQRLSS-PIE-AAESSRLCDDVEGWA 219 (903)
T ss_pred Hhc---CcceecCHHhCCCCHHHHHHHHHhccCC-CCC-HHHHHHHHHHhCChH
Confidence 111 1234444 55888888888755432 232 334677777777763
No 351
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.95 E-value=0.0017 Score=70.34 Aligned_cols=69 Identities=23% Similarity=0.331 Sum_probs=46.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc-----CCCEEEEe-Ccccc-------chhhhhHHHHHHHHHHHhhCCCeEEEEcc
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKES-----GLPFVFAS-GAEFT-------DSEKSGAARINEMFSIARRNAPAFVFVDE 270 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~-----g~~~v~is-~s~~~-------~~~~~g~~~vr~lF~~Ak~~~P~ILfIDE 270 (704)
.+++|++|++|+|||+++++++... +..++.+- ..++. .......-....+...+....|..|++.|
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGE 223 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGE 223 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEee
Confidence 4689999999999999999998875 22233222 11211 11011112366778888889999999999
Q ss_pred ch
Q 005285 271 ID 272 (704)
Q Consensus 271 iD 272 (704)
+-
T Consensus 224 iR 225 (323)
T PRK13833 224 VR 225 (323)
T ss_pred cC
Confidence 84
No 352
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.94 E-value=0.0045 Score=73.86 Aligned_cols=77 Identities=22% Similarity=0.267 Sum_probs=50.2
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHH---HcCCCEEEEeCccccch-----hh------------hhHHHHHHHHHHHh
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAK---ESGLPFVFASGAEFTDS-----EK------------SGAARINEMFSIAR 259 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~---e~g~~~v~is~s~~~~~-----~~------------~g~~~vr~lF~~Ak 259 (704)
|.+....++++||||||||+|+..++. ..|-.+++++..+-... .+ ..+..+..+-...+
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 456667789999999999999977644 34777888876653221 00 01111222222234
Q ss_pred hCCCeEEEEccchhhhc
Q 005285 260 RNAPAFVFVDEIDAIAG 276 (704)
Q Consensus 260 ~~~P~ILfIDEiDal~~ 276 (704)
...+.+|+||-+.++..
T Consensus 136 ~~~~~LVVIDSI~aL~~ 152 (790)
T PRK09519 136 SGALDIVVIDSVAALVP 152 (790)
T ss_pred cCCCeEEEEcchhhhcc
Confidence 56789999999999985
No 353
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.94 E-value=0.00074 Score=63.64 Aligned_cols=30 Identities=40% Similarity=0.800 Sum_probs=27.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHcCCCEEEEe
Q 005285 207 VLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (704)
Q Consensus 207 vLL~GPPGTGKT~LAraiA~e~g~~~v~is 236 (704)
|.+.|+||+|||++|+.+|..+|.|++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999998775
No 354
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.92 E-value=0.0017 Score=64.65 Aligned_cols=69 Identities=23% Similarity=0.352 Sum_probs=44.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCC--CEEEEeCc-cc-------cch-----h--hhhHHHHHHHHHHHhhCCCeEE
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESGL--PFVFASGA-EF-------TDS-----E--KSGAARINEMFSIARRNAPAFV 266 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g~--~~v~is~s-~~-------~~~-----~--~~g~~~vr~lF~~Ak~~~P~IL 266 (704)
...+++.||+|+|||++++++++.... ..+.+... ++ ... . ........++...+....|.++
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i 104 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRI 104 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEE
Confidence 467999999999999999999986531 22222111 11 000 0 0111235566777777889999
Q ss_pred EEccch
Q 005285 267 FVDEID 272 (704)
Q Consensus 267 fIDEiD 272 (704)
+++|+-
T Consensus 105 ~igEir 110 (186)
T cd01130 105 IVGEVR 110 (186)
T ss_pred EEEccC
Confidence 999994
No 355
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.91 E-value=0.011 Score=57.76 Aligned_cols=89 Identities=26% Similarity=0.357 Sum_probs=53.3
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCC-----------CEEEEeCcc-ccc------------hhhhhHHHHHHHHHH
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKESGL-----------PFVFASGAE-FTD------------SEKSGAARINEMFSI 257 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~g~-----------~~v~is~s~-~~~------------~~~~g~~~vr~lF~~ 257 (704)
.+..-+.|.||.|+|||+|++.+++.... .+.++.-.. +.. ....+-.+-|-.+..
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~lar 104 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFAR 104 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHHH
Confidence 34556899999999999999999986421 111111110 110 011223345556667
Q ss_pred HhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHh
Q 005285 258 ARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQL 296 (704)
Q Consensus 258 Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~l 296 (704)
|-...|.++++||-.+-. +......+.+++..+
T Consensus 105 al~~~p~~lllDEPt~~L------D~~~~~~l~~~l~~~ 137 (166)
T cd03223 105 LLLHKPKFVFLDEATSAL------DEESEDRLYQLLKEL 137 (166)
T ss_pred HHHcCCCEEEEECCcccc------CHHHHHHHHHHHHHh
Confidence 777889999999976432 334444555555554
No 356
>PRK06696 uridine kinase; Validated
Probab=96.91 E-value=0.0016 Score=66.74 Aligned_cols=40 Identities=38% Similarity=0.469 Sum_probs=34.7
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccccc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTD 242 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~~ 242 (704)
.|.-|.+.|+||+||||+|+.|+..+ |.+++.++..+|..
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~ 63 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN 63 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence 46778999999999999999999988 78888888777764
No 357
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.91 E-value=0.00093 Score=68.98 Aligned_cols=33 Identities=33% Similarity=0.468 Sum_probs=28.8
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCEEEE
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~i 235 (704)
.|.-++|.||||+||||+|+.+|+.+|++++++
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~ 37 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINM 37 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 455699999999999999999999999877654
No 358
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.90 E-value=0.0022 Score=70.65 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=20.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHc
Q 005285 207 VLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 207 vLL~GPPGTGKT~LAraiA~e~ 228 (704)
.+++||||+|||+|++.|++..
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I 193 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSI 193 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHH
Confidence 7889999999999999999865
No 359
>PRK06547 hypothetical protein; Provisional
Probab=96.90 E-value=0.0015 Score=64.53 Aligned_cols=34 Identities=35% Similarity=0.513 Sum_probs=29.8
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEE
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~i 235 (704)
..+.-|++.|++|+|||++|+.+++.++++++..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~ 46 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHL 46 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecc
Confidence 3567889999999999999999999999887754
No 360
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.90 E-value=0.00076 Score=66.37 Aligned_cols=36 Identities=28% Similarity=0.441 Sum_probs=30.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccc
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF 240 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~ 240 (704)
+-++|.|+||+|||++|++++..++.+++.++...+
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~ 38 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSF 38 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHH
Confidence 468999999999999999999999888776644333
No 361
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.88 E-value=0.002 Score=69.17 Aligned_cols=69 Identities=23% Similarity=0.361 Sum_probs=46.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcC-----CCEEEEeCc-cc-------cch-hhhhHHHHHHHHHHHhhCCCeEEEEc
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESG-----LPFVFASGA-EF-------TDS-EKSGAARINEMFSIARRNAPAFVFVD 269 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g-----~~~v~is~s-~~-------~~~-~~~g~~~vr~lF~~Ak~~~P~ILfID 269 (704)
.+++|++||+|+|||++++++++... ..++.+--. ++ ... ...+...+..+...+....|.+|++.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivG 211 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVG 211 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 46899999999999999999998752 223322111 11 111 01111146778888888999999999
Q ss_pred cch
Q 005285 270 EID 272 (704)
Q Consensus 270 EiD 272 (704)
|+-
T Consensus 212 EiR 214 (299)
T TIGR02782 212 EVR 214 (299)
T ss_pred ccC
Confidence 984
No 362
>PRK06217 hypothetical protein; Validated
Probab=96.88 E-value=0.0009 Score=66.39 Aligned_cols=31 Identities=23% Similarity=0.485 Sum_probs=28.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCEEEEe
Q 005285 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~g~~~v~is 236 (704)
.|+|.|+||+|||++|+++++.+|.+++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999999987654
No 363
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.87 E-value=0.00085 Score=66.58 Aligned_cols=33 Identities=48% Similarity=0.822 Sum_probs=27.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHcCCCEEEEeCcccc
Q 005285 207 VLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (704)
Q Consensus 207 vLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~ 241 (704)
|+|.||||+|||++|+.+|..+|++++ +..++.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i--~~~~l~ 34 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHI--STGDLL 34 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEE--ECcHHH
Confidence 799999999999999999999987765 444443
No 364
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.87 E-value=0.021 Score=57.63 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=26.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCE
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESGLPF 232 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g~~~ 232 (704)
+.-+++.|+||+|||++|+.+|.++|.++
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 45789999999999999999999998765
No 365
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.86 E-value=0.0016 Score=70.45 Aligned_cols=69 Identities=20% Similarity=0.321 Sum_probs=46.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc-----CCCEEEEe-Ccccc-------chhhhhHHHHHHHHHHHhhCCCeEEEEcc
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKES-----GLPFVFAS-GAEFT-------DSEKSGAARINEMFSIARRNAPAFVFVDE 270 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~-----g~~~v~is-~s~~~-------~~~~~g~~~vr~lF~~Ak~~~P~ILfIDE 270 (704)
.+++++.|++|+|||+++++++.+. ...++.+. ..++. .......-...+++..+....|..|++.|
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGE 227 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGE 227 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 4689999999999999999999863 12222221 11111 11001122367888888889999999999
Q ss_pred ch
Q 005285 271 ID 272 (704)
Q Consensus 271 iD 272 (704)
+-
T Consensus 228 iR 229 (319)
T PRK13894 228 VR 229 (319)
T ss_pred cC
Confidence 84
No 366
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.85 E-value=0.045 Score=59.14 Aligned_cols=126 Identities=13% Similarity=0.249 Sum_probs=67.2
Q ss_pred HHHHHHHHhh--C-CCeEEEEccchhhhccCCCC-------ChhHHHHHHHHHHHhcCCcccCCccccccCccEEE--EE
Q 005285 251 INEMFSIARR--N-APAFVFVDEIDAIAGRHARK-------DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF--IC 318 (704)
Q Consensus 251 vr~lF~~Ak~--~-~P~ILfIDEiDal~~~~~~~-------~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViV--Ia 318 (704)
+..++++.+. . -|.++-||++.++.+...=. +...-.....|+..+.+...- .++.+| ++
T Consensus 142 ~~~l~~EL~~~~~~~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~--------~nG~~v~~l~ 213 (309)
T PF10236_consen 142 FQALIRELKAQSKRPPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDF--------KNGAVVTALA 213 (309)
T ss_pred HHHHHHHHHhcccCCceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCcccc--------CCCeEEEEEe
Confidence 3344444433 2 47889999999998652111 223334445555554443221 123444 55
Q ss_pred EcCC---CC--CCcccccCCCc------cc-------------eeeeeCCCCHHHHHHHHHHHhcCCCcccc----ccHH
Q 005285 319 ATNR---PD--ELDLEFVRPGR------ID-------------RRLYIGLPDAKQRVQIFDVHSAGKQLAED----VNFE 370 (704)
Q Consensus 319 aTN~---p~--~LD~aLlRpgR------fd-------------~~I~v~~Pd~~eR~~Il~~~l~~~~l~~d----vdl~ 370 (704)
+|.. +. .++.++....- |. ..|.++..+.+|-..+++.+....-+... .-.+
T Consensus 214 ~t~~~~~~~~~~l~~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e 293 (309)
T PF10236_consen 214 ATSVSNAPKSPTLPVALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLE 293 (309)
T ss_pred ccccccccCCccchhhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHH
Confidence 5532 22 45555543111 11 16789999999999999988765544321 1123
Q ss_pred HHHHhccCCCHHHHH
Q 005285 371 ELVFRTVGFSGADIR 385 (704)
Q Consensus 371 ~La~~t~G~sgadL~ 385 (704)
.+... .|.+++++.
T Consensus 294 ~~~~~-s~GNp~el~ 307 (309)
T PF10236_consen 294 KLFLS-SNGNPRELE 307 (309)
T ss_pred HHHHh-cCCCHHHhc
Confidence 33333 344566654
No 367
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.85 E-value=0.0045 Score=60.30 Aligned_cols=26 Identities=23% Similarity=0.417 Sum_probs=22.5
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHH
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e 227 (704)
.+...+++.||+|||||+|.|++|.-
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhc
Confidence 44556999999999999999999973
No 368
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.85 E-value=0.0064 Score=69.73 Aligned_cols=77 Identities=21% Similarity=0.208 Sum_probs=55.4
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccccchhhhh-----------------------------
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKSG----------------------------- 247 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~~~~~~g----------------------------- 247 (704)
|+.....+|+.||||||||+|+-.++.+. |-+.++++..+-.+.....
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 56666778999999999999999997654 7788888877643211000
Q ss_pred HHHHHHHHHHHhhCCCeEEEEccchhhhc
Q 005285 248 AARINEMFSIARRNAPAFVFVDEIDAIAG 276 (704)
Q Consensus 248 ~~~vr~lF~~Ak~~~P~ILfIDEiDal~~ 276 (704)
...+..+.+......|.+|+||-+..+..
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 22344555666677899999999998853
No 369
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.84 E-value=0.0084 Score=58.84 Aligned_cols=88 Identities=25% Similarity=0.259 Sum_probs=53.0
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCC--CEEEEeCccc---------------------cc-hh----hhhHHHHHHH
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESGL--PFVFASGAEF---------------------TD-SE----KSGAARINEM 254 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g~--~~v~is~s~~---------------------~~-~~----~~g~~~vr~l 254 (704)
...-+.|.||+|+|||+|++.+++.... --+.+++.++ .. .. ..+-.+-|-.
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv~ 106 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRLG 106 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHHHH
Confidence 3446899999999999999999986421 0111221110 00 00 1223345556
Q ss_pred HHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHh
Q 005285 255 FSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQL 296 (704)
Q Consensus 255 F~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~l 296 (704)
+..|-...|.++++||--+-. +......+.+++..+
T Consensus 107 la~al~~~p~~lllDEPt~~L------D~~~~~~l~~~l~~~ 142 (173)
T cd03246 107 LARALYGNPRILVLDEPNSHL------DVEGERALNQAIAAL 142 (173)
T ss_pred HHHHHhcCCCEEEEECCcccc------CHHHHHHHHHHHHHH
Confidence 677777889999999975432 444455566666655
No 370
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.84 E-value=0.00095 Score=63.62 Aligned_cols=33 Identities=30% Similarity=0.734 Sum_probs=27.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHcCCCEEEEeCcccc
Q 005285 207 VLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (704)
Q Consensus 207 vLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~ 241 (704)
++|+|+||+|||++|+.++..++.+++ +...+.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i--~~D~~~ 34 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI--DGDDLH 34 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE--eCcccc
Confidence 689999999999999999999887665 444443
No 371
>PRK13948 shikimate kinase; Provisional
Probab=96.81 E-value=0.0013 Score=65.47 Aligned_cols=35 Identities=31% Similarity=0.329 Sum_probs=31.4
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEe
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is 236 (704)
++|..|+|.|.+|+|||++++.+|+.+|.+|+..+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 35789999999999999999999999999998544
No 372
>PTZ00035 Rad51 protein; Provisional
Probab=96.81 E-value=0.0072 Score=66.02 Aligned_cols=99 Identities=15% Similarity=0.098 Sum_probs=57.9
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---------CCCEEEEeCccccch--h-------hh---------------
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---------GLPFVFASGAEFTDS--E-------KS--------------- 246 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e~---------g~~~v~is~s~~~~~--~-------~~--------------- 246 (704)
|++...-+.|+||||+|||+|+..+|... +-.+++++...-... . +.
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~nI~~~~~~ 193 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLDNIAYARAY 193 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhhceEEEccC
Confidence 56666678899999999999999997543 335667776552110 0 00
Q ss_pred -h---HHHHHHHHHHHhhCCCeEEEEccchhhhccCCC---CChhHHHHHHHHHHHhcC
Q 005285 247 -G---AARINEMFSIARRNAPAFVFVDEIDAIAGRHAR---KDPRRRATFEALIAQLDG 298 (704)
Q Consensus 247 -g---~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~---~~~e~~~~ln~LL~~ld~ 298 (704)
. ...+..+........+.+|+||-|-++...... ...++.+.+.+++..|..
T Consensus 194 ~~e~~~~~l~~~~~~l~~~~~~lvVIDSital~r~~~~~~~~~~~r~~~l~~~~~~L~~ 252 (337)
T PTZ00035 194 NHEHQMQLLSQAAAKMAEERFALLIVDSATALFRVDYSGRGELAERQQHLGKFLRALQK 252 (337)
T ss_pred CHHHHHHHHHHHHHHhhccCccEEEEECcHHhhhhhccCcccHHHHHHHHHHHHHHHHH
Confidence 0 011112222223456789999999998643211 122344556666665554
No 373
>PRK14530 adenylate kinase; Provisional
Probab=96.81 E-value=0.0011 Score=67.39 Aligned_cols=30 Identities=40% Similarity=0.599 Sum_probs=27.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCEEEE
Q 005285 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~g~~~v~i 235 (704)
.|+|.||||+||||+++.+|+.+|++++.+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 589999999999999999999999877644
No 374
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.80 E-value=0.0075 Score=65.90 Aligned_cols=100 Identities=14% Similarity=0.112 Sum_probs=58.0
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---------CCCEEEEeCcc-ccch--------hhhh--------------
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---------GLPFVFASGAE-FTDS--------EKSG-------------- 247 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e~---------g~~~v~is~s~-~~~~--------~~~g-------------- 247 (704)
|++...-..|+||||||||+|+..+|-.. +..+++++... |... .+..
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~ 201 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAY 201 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCC
Confidence 45555667899999999999999887432 24678887755 1110 0000
Q ss_pred --H---HHHHHHHHHHhhCCCeEEEEccchhhhccCCC---CChhHHHHHHHHHHHhcCC
Q 005285 248 --A---ARINEMFSIARRNAPAFVFVDEIDAIAGRHAR---KDPRRRATFEALIAQLDGD 299 (704)
Q Consensus 248 --~---~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~---~~~e~~~~ln~LL~~ld~~ 299 (704)
. ..+..+-.......+.+|+||-|-++...... .-.++.+.+++++..|...
T Consensus 202 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSital~r~~~~~rg~l~~rq~~L~~~~~~L~~l 261 (344)
T PLN03187 202 TYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTGRGELAERQQKLAQMLSRLTKI 261 (344)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHhhhccccCccchHHHHHHHHHHHHHHHHH
Confidence 0 11122222333456889999999998643211 1223445566666655443
No 375
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.77 E-value=0.0035 Score=57.04 Aligned_cols=24 Identities=50% Similarity=0.595 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHc
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
++++++||+|+|||+++-.++..+
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 468999999999999988887655
No 376
>PRK13764 ATPase; Provisional
Probab=96.76 E-value=0.002 Score=74.99 Aligned_cols=70 Identities=23% Similarity=0.337 Sum_probs=41.3
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcC---CCEEEEe-Ccccc-----chhhhhHHHHHHHHHHHhhCCCeEEEEccch
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESG---LPFVFAS-GAEFT-----DSEKSGAARINEMFSIARRNAPAFVFVDEID 272 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g---~~~v~is-~s~~~-----~~~~~g~~~vr~lF~~Ak~~~P~ILfIDEiD 272 (704)
..+++|++||||+||||++++++..+. ..+..+- ..++. ..+.............+....|.+|++||+-
T Consensus 256 ~~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~~~~~~~~~~~~lLR~rPD~IivGEiR 334 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSKLEGSMEETADILLLVRPDYTIYDEMR 334 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEeeccccHHHHHHHHHhhCCCEEEECCCC
Confidence 357899999999999999999998764 2232221 11111 1110000011222333345679999999985
No 377
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.75 E-value=0.0047 Score=59.31 Aligned_cols=34 Identities=32% Similarity=0.602 Sum_probs=28.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccc
Q 005285 207 VLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEF 240 (704)
Q Consensus 207 vLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~ 240 (704)
++++|+||+|||++|+.++..+ +.+.+.++...+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~ 38 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 6899999999999999999987 777777765444
No 378
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.75 E-value=0.0059 Score=61.55 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=20.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 005285 205 RGVLLSGPPGTGKTLFARTLAK 226 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~ 226 (704)
.-++|.||.|+|||++.+.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 4689999999999999999983
No 379
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.74 E-value=0.0012 Score=63.68 Aligned_cols=28 Identities=50% Similarity=0.755 Sum_probs=26.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHcCCCEEE
Q 005285 207 VLLSGPPGTGKTLFARTLAKESGLPFVF 234 (704)
Q Consensus 207 vLL~GPPGTGKT~LAraiA~e~g~~~v~ 234 (704)
|-+.|||||||||+|+-+|..+|.++++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5688999999999999999999999974
No 380
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.74 E-value=0.0068 Score=60.12 Aligned_cols=88 Identities=24% Similarity=0.141 Sum_probs=52.6
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCC--CEEEEeCccc----cchhhhhHHHHHHHHHHHhhCCCeEEEEccchhhhc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESGL--PFVFASGAEF----TDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAG 276 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g~--~~v~is~s~~----~~~~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~ 276 (704)
...-+.|.||.|+|||||++.+++.... --+.+++..+ ......+-.+-+-.+..|-...|.++++||--+-.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts~L- 102 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYL- 102 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccC-
Confidence 3456889999999999999999986421 1122222111 11112333345555667777789999999975332
Q ss_pred cCCCCChhHHHHHHHHHHHh
Q 005285 277 RHARKDPRRRATFEALIAQL 296 (704)
Q Consensus 277 ~~~~~~~e~~~~ln~LL~~l 296 (704)
+......+..++.++
T Consensus 103 -----D~~~~~~l~~~l~~~ 117 (177)
T cd03222 103 -----DIEQRLNAARAIRRL 117 (177)
T ss_pred -----CHHHHHHHHHHHHHH
Confidence 334444444555544
No 381
>PRK13695 putative NTPase; Provisional
Probab=96.73 E-value=0.021 Score=56.07 Aligned_cols=23 Identities=35% Similarity=0.621 Sum_probs=20.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHc
Q 005285 206 GVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
.++|.|+||+|||++++.+++++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999987764
No 382
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.73 E-value=0.0064 Score=69.70 Aligned_cols=44 Identities=36% Similarity=0.477 Sum_probs=35.3
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHH----cCCCEEEEeCccccch
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE----SGLPFVFASGAEFTDS 243 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e----~g~~~v~is~s~~~~~ 243 (704)
|.+..+.+|+.||||||||+||..++.+ .|-+.++++..+-.+.
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~ 64 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQD 64 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHH
Confidence 5677888999999999999999988432 3789999998764443
No 383
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.73 E-value=0.0011 Score=64.12 Aligned_cols=32 Identities=34% Similarity=0.656 Sum_probs=26.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccc
Q 005285 207 VLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF 240 (704)
Q Consensus 207 vLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~ 240 (704)
++|.||||+|||++|+.+++.++.+++ +..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v--~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI--EGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE--eCccc
Confidence 478999999999999999999987664 44444
No 384
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=96.72 E-value=0.0047 Score=66.41 Aligned_cols=143 Identities=21% Similarity=0.223 Sum_probs=76.8
Q ss_pred ccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccchhhhhHHHHHHHHHH
Q 005285 178 DVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARINEMFSI 257 (704)
Q Consensus 178 ~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~~~~g~~~vr~lF~~ 257 (704)
+.++.+.+++.+.-.+. .+..+-++|+|+.|+|||++.+.+..-+|-....+..+........ .-|..
T Consensus 56 ~~~~~l~~~lg~~L~~~------~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~~~~~~~~~------~~f~~ 123 (304)
T TIGR01613 56 ELIEYLQRVIGYSLTGN------YTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAVASLKMNEFQE------HRFGL 123 (304)
T ss_pred HHHHHHHHHHhHHhcCC------CCceEEEEEECCCCCcHHHHHHHHHHHhChhhccCCcchhhhhccC------CCchh
Confidence 34666777766644431 3456789999999999999999998877765433222221211100 01444
Q ss_pred HhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCc-ccCCccccccCccEEEEEEcCCCCCC---cccccCC
Q 005285 258 ARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDK-ERTGIDRFSLRQAVIFICATNRPDEL---DLEFVRP 333 (704)
Q Consensus 258 Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~-~~~~~~~~~~~~~ViVIaaTN~p~~L---D~aLlRp 333 (704)
|......+++.||++.-. . . ....+..+... |... ...+.+.+.......+|.+||..-.+ +.++.|
T Consensus 124 a~l~gk~l~~~~E~~~~~-~---~---~~~~lK~lt~g-d~i~~~~k~k~~~~~~~~~~~i~~tN~~P~~~~~~~a~~R- 194 (304)
T TIGR01613 124 ARLEGKRAVIGDEVQKGY-R---D---DESTFKSLTGG-DTITARFKNKDPFEFTPKFTLVQSTNHLPRIRGFDGGIKR- 194 (304)
T ss_pred hhhcCCEEEEecCCCCCc-c---c---cHHhhhhhhcC-CeEEeecccCCcEEEEEeeEEEEEcCCCCccCCCChhhee-
Confidence 444455688899986320 0 0 11223333210 1110 01112223333446778888874443 568888
Q ss_pred CccceeeeeC
Q 005285 334 GRIDRRLYIG 343 (704)
Q Consensus 334 gRfd~~I~v~ 343 (704)
|+ ..|.|+
T Consensus 195 -R~-~vi~f~ 202 (304)
T TIGR01613 195 -RL-RIIPFT 202 (304)
T ss_pred -eE-EEEecc
Confidence 77 455554
No 385
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.71 E-value=0.0034 Score=68.75 Aligned_cols=68 Identities=16% Similarity=0.311 Sum_probs=43.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCC----CEEEEe-Ccccc--------ch--hhhhHHHHHHHHHHHhhCCCeEEEEc
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKESGL----PFVFAS-GAEFT--------DS--EKSGAARINEMFSIARRNAPAFVFVD 269 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e~g~----~~v~is-~s~~~--------~~--~~~g~~~vr~lF~~Ak~~~P~ILfID 269 (704)
..+++.||+|+||||+++++.+...- .++.+. ..++. .. .+............+....|.+|++|
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vg 202 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIG 202 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEe
Confidence 45789999999999999999886642 233221 11111 00 11111234556667777889999999
Q ss_pred cch
Q 005285 270 EID 272 (704)
Q Consensus 270 EiD 272 (704)
|+-
T Consensus 203 Eir 205 (343)
T TIGR01420 203 EMR 205 (343)
T ss_pred CCC
Confidence 984
No 386
>PRK14528 adenylate kinase; Provisional
Probab=96.71 E-value=0.0015 Score=65.18 Aligned_cols=31 Identities=29% Similarity=0.656 Sum_probs=27.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCCCEEEE
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e~g~~~v~i 235 (704)
+.+++.||||+|||++|+.+|..+|++.+.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 3589999999999999999999999887653
No 387
>PRK13946 shikimate kinase; Provisional
Probab=96.71 E-value=0.0016 Score=64.72 Aligned_cols=34 Identities=44% Similarity=0.558 Sum_probs=30.6
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEe
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is 236 (704)
.++.|+|.|+||+|||++++.+|+.+|.+|+..+
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 4568999999999999999999999999988554
No 388
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.70 E-value=0.0022 Score=65.32 Aligned_cols=70 Identities=23% Similarity=0.336 Sum_probs=45.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc--------CCCEEEEeCcc-ccch-hh----hhHH---------HHHHHHHHHhh
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKES--------GLPFVFASGAE-FTDS-EK----SGAA---------RINEMFSIARR 260 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~--------g~~~v~is~s~-~~~~-~~----~g~~---------~vr~lF~~Ak~ 260 (704)
..+.|+.||||||||++.|-+|+-+ ...+..++-++ +... .+ .-.. .-..+....+.
T Consensus 137 ~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrs 216 (308)
T COG3854 137 WLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRS 216 (308)
T ss_pred ceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHh
Confidence 4568999999999999999998854 23344454332 2211 00 0011 12345566778
Q ss_pred CCCeEEEEccchh
Q 005285 261 NAPAFVFVDEIDA 273 (704)
Q Consensus 261 ~~P~ILfIDEiDa 273 (704)
++|.|+++|||..
T Consensus 217 m~PEViIvDEIGt 229 (308)
T COG3854 217 MSPEVIIVDEIGT 229 (308)
T ss_pred cCCcEEEEecccc
Confidence 9999999999953
No 389
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.69 E-value=0.0017 Score=63.99 Aligned_cols=33 Identities=33% Similarity=0.605 Sum_probs=29.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCEEEEe
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is 236 (704)
++.|+|.||+|+|||++++.+|+.++.+++..+
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D 36 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSD 36 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECC
Confidence 457999999999999999999999999987654
No 390
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.69 E-value=0.013 Score=67.58 Aligned_cols=41 Identities=41% Similarity=0.463 Sum_probs=32.4
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHH----cCCCEEEEeCccc
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE----SGLPFVFASGAEF 240 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e----~g~~~v~is~s~~ 240 (704)
|.+....+||+|+||||||+|+..++.+ .|-++++++..+-
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~ 71 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEES 71 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCC
Confidence 4566778999999999999999987643 2678888887663
No 391
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.69 E-value=0.0017 Score=63.31 Aligned_cols=31 Identities=35% Similarity=0.509 Sum_probs=28.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCCCEEEE
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e~g~~~v~i 235 (704)
..++|.|+||+|||++++.+|..+|.+|+..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~ 33 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDT 33 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEc
Confidence 4589999999999999999999999998754
No 392
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.67 E-value=0.0076 Score=65.89 Aligned_cols=100 Identities=16% Similarity=0.090 Sum_probs=58.8
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---------CCCEEEEeCccc-cc-----h---hhh---------------
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---------GLPFVFASGAEF-TD-----S---EKS--------------- 246 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e~---------g~~~v~is~s~~-~~-----~---~~~--------------- 246 (704)
|+....-++++|+||+|||+|+..+|..+ +.++++++...- .. . .+.
T Consensus 119 G~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l~~i~~~~~~ 198 (342)
T PLN03186 119 GIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLENVAYARAY 198 (342)
T ss_pred CCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhccceEEEecC
Confidence 45556667899999999999999887432 236888887762 10 0 000
Q ss_pred -h---HHHHHHHHHHHhhCCCeEEEEccchhhhccCCC---CChhHHHHHHHHHHHhcCC
Q 005285 247 -G---AARINEMFSIARRNAPAFVFVDEIDAIAGRHAR---KDPRRRATFEALIAQLDGD 299 (704)
Q Consensus 247 -g---~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~---~~~e~~~~ln~LL~~ld~~ 299 (704)
. ...+..+........+.+|+||-|-++...... .-..+.+.+.+++..|...
T Consensus 199 ~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alfr~~~~~~g~l~~r~~~L~~~l~~L~~l 258 (342)
T PLN03186 199 NTDHQSELLLEAASMMAETRFALMIVDSATALYRTEFSGRGELSARQMHLGKFLRSLQRL 258 (342)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHH
Confidence 0 001122222234556899999999998643211 1123344566776666553
No 393
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.66 E-value=0.012 Score=66.28 Aligned_cols=39 Identities=28% Similarity=0.380 Sum_probs=31.5
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccc
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEF 240 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~ 240 (704)
..|..++|+|++|+|||+++..+|..+ |..+..+++..+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 458889999999999999999998755 666666766554
No 394
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=96.66 E-value=0.045 Score=56.65 Aligned_cols=135 Identities=6% Similarity=0.033 Sum_probs=93.5
Q ss_pred ccCceEEEEcCCC-ChHHHHHHHHHHHcCC---------CEEEEeCccccch--hhhhHHHHHHHHHHHh----hCCCeE
Q 005285 202 QFVRGVLLSGPPG-TGKTLFARTLAKESGL---------PFVFASGAEFTDS--EKSGAARINEMFSIAR----RNAPAF 265 (704)
Q Consensus 202 ~~p~gvLL~GPPG-TGKT~LAraiA~e~g~---------~~v~is~s~~~~~--~~~g~~~vr~lF~~Ak----~~~P~I 265 (704)
+.....|+.|..+ +||..++.-++..+.. .+..+....-... ..-+...+|.+-+.+. .....|
T Consensus 13 kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KV 92 (263)
T PRK06581 13 KLYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKV 92 (263)
T ss_pred cchheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEE
Confidence 4556799999998 9999998888765422 2333332110000 1123445666655443 234579
Q ss_pred EEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCC
Q 005285 266 VFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLP 345 (704)
Q Consensus 266 LfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~P 345 (704)
++|+++|.+. ....|.||..++.-. .++++|..|+.++.|.|.+++ |+ ..+.++.|
T Consensus 93 iII~~ae~mt----------~~AANALLKtLEEPP-----------~~t~fILit~~~~~LLpTIrS--RC-q~i~~~~p 148 (263)
T PRK06581 93 AIIYSAELMN----------LNAANSCLKILEDAP-----------KNSYIFLITSRAASIISTIRS--RC-FKINVRSS 148 (263)
T ss_pred EEEechHHhC----------HHHHHHHHHhhcCCC-----------CCeEEEEEeCChhhCchhHhh--ce-EEEeCCCC
Confidence 9999999994 347899999998743 346888888889999999998 88 67899999
Q ss_pred CHHHHHHHHHHHhcC
Q 005285 346 DAKQRVQIFDVHSAG 360 (704)
Q Consensus 346 d~~eR~~Il~~~l~~ 360 (704)
+...-.+.+...+..
T Consensus 149 ~~~~~~e~~~~~~~p 163 (263)
T PRK06581 149 ILHAYNELYSQFIQP 163 (263)
T ss_pred CHHHHHHHHHHhccc
Confidence 988777777666543
No 395
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=96.66 E-value=0.021 Score=64.01 Aligned_cols=29 Identities=34% Similarity=0.447 Sum_probs=23.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCE
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESGLPF 232 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g~~~ 232 (704)
.-+|||.|.|||.|+.|.|.+-+-+.+-+
T Consensus 364 DINVLLLGDPgtAKSQlLKFvEkvsPIaV 392 (729)
T KOG0481|consen 364 DINVLLLGDPGTAKSQLLKFVEKVSPIAV 392 (729)
T ss_pred ceeEEEecCCchhHHHHHHHHHhcCceEE
Confidence 35699999999999999999977554443
No 396
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.65 E-value=0.0062 Score=59.23 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=19.6
Q ss_pred CceEEEEcCCCChHHHHHHHHH
Q 005285 204 VRGVLLSGPPGTGKTLFARTLA 225 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA 225 (704)
++..++.||.|+|||++.++++
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~ 42 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIG 42 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999999984
No 397
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.65 E-value=0.019 Score=57.90 Aligned_cols=36 Identities=31% Similarity=0.397 Sum_probs=26.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCcc
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAE 239 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~ 239 (704)
|+-++|.||+|+|||+.+-.+|..+ +..+-.+++..
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~ 39 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADT 39 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEEST
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCC
Confidence 6789999999999999988887654 55555555443
No 398
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.63 E-value=0.0029 Score=68.95 Aligned_cols=70 Identities=19% Similarity=0.310 Sum_probs=46.7
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCC--CEEEEe-Ccccc------------chh--hhhHHHHHHHHHHHhhCCCeE
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESGL--PFVFAS-GAEFT------------DSE--KSGAARINEMFSIARRNAPAF 265 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g~--~~v~is-~s~~~------------~~~--~~g~~~vr~lF~~Ak~~~P~I 265 (704)
..+++|++|++|+|||++++++.....- .++.+- ..++. ... +.+.-...++...+....|..
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~ 238 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDR 238 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCe
Confidence 4578999999999999999999887642 222221 01110 000 111123567888888999999
Q ss_pred EEEccch
Q 005285 266 VFVDEID 272 (704)
Q Consensus 266 LfIDEiD 272 (704)
|++.|+-
T Consensus 239 IivGEiR 245 (332)
T PRK13900 239 IIVGELR 245 (332)
T ss_pred EEEEecC
Confidence 9999985
No 399
>PF06480 FtsH_ext: FtsH Extracellular; InterPro: IPR011546 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in the FtsH family of proteins that include FtsH a membrane-bound ATP-dependent protease universally conserved in prokaryotes []. The FtsH peptidases, which belong to MEROPS peptidase family M41 (clan MA(E)), efficiently degrade proteins that have a low thermodynamic stability - e.g. they lack robust unfoldase activity. This feature may be key and implies that this could be a criterion for degrading a protein. In Oenococcus oeni (Leuconostoc oenos) FtsH is involved in protection against environmental stress [], and shows increased expression under heat or osmotic stress. These two lines of evidence suggest that it is a fundamental prokaryotic self-protection mechanism that checks if proteins are correctly folded. The precise function of this N-terminal region is unclear. ; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0016021 integral to membrane; PDB: 2LNA_A.
Probab=96.62 E-value=0.0016 Score=58.20 Aligned_cols=66 Identities=24% Similarity=0.412 Sum_probs=36.0
Q ss_pred CCccchHHHHHhhccCCccEEEEEcCeeE----------EEEEEecCc--eeEEEEeCCCC----hhHHHHHHhCCCeEE
Q 005285 35 RPKLPYTYFLEKLDSSEVAAVVFTEDLKR----------LYVTMKEGF--PLEYVVDIPLD----PYLFETIASSGAEVD 98 (704)
Q Consensus 35 ~~~~~y~~f~~~~~~~~v~~~~~~~~~~~----------~~~~~~~~~--~~~~~~~~~~~----~~l~~~l~~~~~~~~ 98 (704)
..+++||+|+++|++|+|++|++.++... +....+++. ...+....+.+ +.|.+.+.++|+++.
T Consensus 27 ~~~i~YS~F~~~l~~g~V~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~v~~~ 106 (110)
T PF06480_consen 27 TKEISYSEFLQMLEKGNVKKVVIQNDKITEPKKDNPTGDIEGKTKDGSKYTTFYTPSIPSVDSFDEFLIEALVEKGVKYE 106 (110)
T ss_dssp SEE--HHHHHHTGGGT-EEEEEEETTTEE---------EEEE-TTTS-STT--EEEE-S-HHHHHHHHHHHHHHTT--TT
T ss_pred CcEECHHHHHHHHHcCCEEEEEEECCEEEEeeeccccccccccccCCCccEEEEEcCCCCCHHHHHHHHHHHHHCCCccc
Confidence 45799999999999999999999987644 112222222 12234444433 346667777777765
Q ss_pred Ee
Q 005285 99 LL 100 (704)
Q Consensus 99 ~~ 100 (704)
..
T Consensus 107 ~~ 108 (110)
T PF06480_consen 107 SV 108 (110)
T ss_dssp T-
T ss_pred ee
Confidence 43
No 400
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.62 E-value=0.011 Score=57.92 Aligned_cols=105 Identities=19% Similarity=0.237 Sum_probs=60.8
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCC----------C-----------EEEEeCc-c-ccch-h-----hhhHHHHHH
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESGL----------P-----------FVFASGA-E-FTDS-E-----KSGAARINE 253 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g~----------~-----------~v~is~s-~-~~~~-~-----~~g~~~vr~ 253 (704)
....+.|.||+|+|||+|++.+|+.... + +.++.-. . +... . -.+-.+-|-
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~qrv 104 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQRL 104 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHHHHH
Confidence 3456889999999999999999985410 0 1111110 0 1110 0 122233455
Q ss_pred HHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCC
Q 005285 254 MFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDEL 326 (704)
Q Consensus 254 lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~L 326 (704)
.+..|-...|.|+++||-.+-. +......+.+++..+... +..+|.+|+.++.+
T Consensus 105 ~laral~~~p~illlDEPt~~L------D~~~~~~l~~~l~~~~~~-------------g~tiii~th~~~~~ 158 (173)
T cd03230 105 ALAQALLHDPELLILDEPTSGL------DPESRREFWELLRELKKE-------------GKTILLSSHILEEA 158 (173)
T ss_pred HHHHHHHcCCCEEEEeCCccCC------CHHHHHHHHHHHHHHHHC-------------CCEEEEECCCHHHH
Confidence 5667777889999999976432 444455566666655321 12566667765543
No 401
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.62 E-value=0.0019 Score=63.63 Aligned_cols=28 Identities=21% Similarity=0.509 Sum_probs=25.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCEE
Q 005285 206 GVLLSGPPGTGKTLFARTLAKESGLPFV 233 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~g~~~v 233 (704)
-+++.||||+||||+++.+|..+|.+.+
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~ 32 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHL 32 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 5789999999999999999999987654
No 402
>PRK14974 cell division protein FtsY; Provisional
Probab=96.61 E-value=0.019 Score=62.62 Aligned_cols=37 Identities=32% Similarity=0.350 Sum_probs=28.5
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCcc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAE 239 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~ 239 (704)
.|.-++|.||||+||||++..+|..+ |..+..+++..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt 178 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDT 178 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCc
Confidence 47789999999999999888887654 55665565543
No 403
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.60 E-value=0.017 Score=59.72 Aligned_cols=33 Identities=30% Similarity=0.335 Sum_probs=25.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHc---------------CCCEEEEeCcc
Q 005285 207 VLLSGPPGTGKTLFARTLAKES---------------GLPFVFASGAE 239 (704)
Q Consensus 207 vLL~GPPGTGKT~LAraiA~e~---------------g~~~v~is~s~ 239 (704)
.+|+||||+|||+|+..+|... +.+++++++.+
T Consensus 4 ~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed 51 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAED 51 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCC
Confidence 5899999999999999997531 34577787665
No 404
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.60 E-value=0.004 Score=63.78 Aligned_cols=71 Identities=30% Similarity=0.418 Sum_probs=44.1
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHH---cCCCEEEEeCccccchhhhhHHHHHHHHHHHhhCCCeEEEEccc
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEFTDSEKSGAARINEMFSIARRNAPAFVFVDEI 271 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e---~g~~~v~is~s~~~~~~~~g~~~vr~lF~~Ak~~~P~ILfIDEi 271 (704)
|.+....++++||||+|||+|+..++.+ .|.+.++++..+..+........+...|+.... .+.+.++|++
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~~~~i~~~~~~~g~~~~~~~~-~~~l~i~d~~ 89 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEESRESIIRQAAQFGMDFEKAIE-EGKLVIIDAL 89 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHhCCCHHHHhh-cCCEEEEEcc
Confidence 5667778999999999999999987643 367888888755443222112222222333322 2456777754
No 405
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.60 E-value=0.0095 Score=64.53 Aligned_cols=100 Identities=16% Similarity=0.139 Sum_probs=57.7
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc------C---CCEEEEeCccccch--h-------hhhH-------------
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES------G---LPFVFASGAEFTDS--E-------KSGA------------- 248 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e~------g---~~~v~is~s~~~~~--~-------~~g~------------- 248 (704)
|+....-+.++||||+|||+|+..+|..+ | ...++++..+.... . +...
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~~~~~~~~l~~i~~~~~~ 171 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLNPEDVLDNVAYARAY 171 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHcCCChHHhhccEEEEecC
Confidence 55666678899999999999999987632 1 35678887662111 0 0000
Q ss_pred ------HHHHHHHHHHhhCCCeEEEEccchhhhccCCCC--Ch-hHHHHHHHHHHHhcCC
Q 005285 249 ------ARINEMFSIARRNAPAFVFVDEIDAIAGRHARK--DP-RRRATFEALIAQLDGD 299 (704)
Q Consensus 249 ------~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~--~~-e~~~~ln~LL~~ld~~ 299 (704)
..+..+........+.+|+||-|-+++.....+ .. .+...+.+++..|...
T Consensus 172 ~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~r~~~~~~~~~~~rq~~l~~~~~~L~~l 231 (316)
T TIGR02239 172 NTDHQLQLLQQAAAMMSESRFALLIVDSATALYRTDFSGRGELSARQMHLARFLRSLQRL 231 (316)
T ss_pred ChHHHHHHHHHHHHhhccCCccEEEEECcHHHhhhhcCCcchHHHHHHHHHHHHHHHHHH
Confidence 011122222334568899999999986432111 11 2233456666665543
No 406
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.59 E-value=0.0018 Score=65.69 Aligned_cols=29 Identities=41% Similarity=0.802 Sum_probs=26.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHcCCCEEEE
Q 005285 207 VLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (704)
Q Consensus 207 vLL~GPPGTGKT~LAraiA~e~g~~~v~i 235 (704)
|++.||||+|||++|+.+|..+|++.+++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 78999999999999999999998877653
No 407
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.59 E-value=0.01 Score=70.68 Aligned_cols=70 Identities=19% Similarity=0.222 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCc
Q 005285 248 AARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELD 327 (704)
Q Consensus 248 ~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD 327 (704)
-.+-|-+..+|--..|.||++||.=+= -|.+.++.+.+-|.++... ..+|..|+|+..+.
T Consensus 613 GQrQrlalARaLl~~P~ILlLDEaTSa------LD~~sE~~I~~~L~~~~~~--------------~T~I~IaHRl~ti~ 672 (709)
T COG2274 613 GQRQRLALARALLSKPKILLLDEATSA------LDPETEAIILQNLLQILQG--------------RTVIIIAHRLSTIR 672 (709)
T ss_pred HHHHHHHHHHHhccCCCEEEEeCcccc------cCHhHHHHHHHHHHHHhcC--------------CeEEEEEccchHhh
Confidence 344556666777788999999997543 2455556666666655432 24566677766543
Q ss_pred ccccCCCccceeeeeCC
Q 005285 328 LEFVRPGRIDRRLYIGL 344 (704)
Q Consensus 328 ~aLlRpgRfd~~I~v~~ 344 (704)
++|+.+.+..
T Consensus 673 -------~adrIiVl~~ 682 (709)
T COG2274 673 -------SADRIIVLDQ 682 (709)
T ss_pred -------hccEEEEccC
Confidence 6777666543
No 408
>PRK14527 adenylate kinase; Provisional
Probab=96.59 E-value=0.0017 Score=64.92 Aligned_cols=32 Identities=41% Similarity=0.537 Sum_probs=28.1
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCEEE
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~ 234 (704)
.|.-++++||||+|||++|+.+|..+|.+.+.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is 36 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLS 36 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 46679999999999999999999999877654
No 409
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.01 Score=65.14 Aligned_cols=76 Identities=20% Similarity=0.343 Sum_probs=57.5
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc--CCCEEEEeCccccchhhh---------------hHHHHHHHHHHHhhCCCeE
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES--GLPFVFASGAEFTDSEKS---------------GAARINEMFSIARRNAPAF 265 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~--g~~~v~is~s~~~~~~~~---------------g~~~vr~lF~~Ak~~~P~I 265 (704)
+..-+|+-|.||.|||||.-.+|..+ ..+++|+++.+-...... .+..+.++.+.+....|.+
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~l 171 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPDL 171 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCCCE
Confidence 33446777999999999998887654 238999999986543222 2234678888888899999
Q ss_pred EEEccchhhhccC
Q 005285 266 VFVDEIDAIAGRH 278 (704)
Q Consensus 266 LfIDEiDal~~~~ 278 (704)
++||-|..+....
T Consensus 172 vVIDSIQT~~s~~ 184 (456)
T COG1066 172 VVIDSIQTLYSEE 184 (456)
T ss_pred EEEeccceeeccc
Confidence 9999999997654
No 410
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.58 E-value=0.0063 Score=67.35 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=22.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcC
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKESG 229 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e~g 229 (704)
.-+++.||||+|||++++.+++...
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhc
Confidence 3489999999999999999998753
No 411
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.57 E-value=0.0031 Score=68.04 Aligned_cols=34 Identities=38% Similarity=0.555 Sum_probs=31.0
Q ss_pred CccCceEEEEcCCCChHHHHHHHHHHHcCCCEEE
Q 005285 201 VQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (704)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~ 234 (704)
..++..|.|.|+||+|||++++.+|..+|.+|+.
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id 163 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVE 163 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 3567789999999999999999999999999994
No 412
>PF13245 AAA_19: Part of AAA domain
Probab=96.57 E-value=0.0034 Score=53.45 Aligned_cols=31 Identities=35% Similarity=0.560 Sum_probs=20.9
Q ss_pred eEEEEcCCCChHH-HHHHHHHHHc------CCCEEEEe
Q 005285 206 GVLLSGPPGTGKT-LFARTLAKES------GLPFVFAS 236 (704)
Q Consensus 206 gvLL~GPPGTGKT-~LAraiA~e~------g~~~v~is 236 (704)
-+++.|||||||| ++++.++... +..++.++
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a 49 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLA 49 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEC
Confidence 4566999999999 5566665544 44455554
No 413
>PRK02496 adk adenylate kinase; Provisional
Probab=96.57 E-value=0.0021 Score=63.64 Aligned_cols=30 Identities=33% Similarity=0.594 Sum_probs=26.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCEEEE
Q 005285 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~g~~~v~i 235 (704)
-+++.||||+|||++|+.+|..+|.+.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 388999999999999999999999876644
No 414
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.56 E-value=0.0068 Score=66.55 Aligned_cols=23 Identities=52% Similarity=0.730 Sum_probs=21.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHc
Q 005285 206 GVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
-+++.|.||||||.+|-.+|.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 47889999999999999999987
No 415
>PRK04040 adenylate kinase; Provisional
Probab=96.56 E-value=0.0022 Score=64.16 Aligned_cols=30 Identities=27% Similarity=0.452 Sum_probs=26.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc--CCCEE
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKES--GLPFV 233 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~--g~~~v 233 (704)
|+-++++|+||+|||++++.++..+ +.+++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 5679999999999999999999998 55554
No 416
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.55 E-value=0.0059 Score=61.41 Aligned_cols=42 Identities=31% Similarity=0.487 Sum_probs=33.1
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHc-CCCEEEEeCccccch
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKES-GLPFVFASGAEFTDS 243 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~-g~~~v~is~s~~~~~ 243 (704)
..|.-+++.|+||+|||+++..+..+. +-.++.++..++...
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~ 55 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQF 55 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGG
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHh
Confidence 568899999999999999999999888 778888998887654
No 417
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.54 E-value=0.016 Score=57.71 Aligned_cols=19 Identities=32% Similarity=0.704 Sum_probs=18.1
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 005285 207 VLLSGPPGTGKTLFARTLA 225 (704)
Q Consensus 207 vLL~GPPGTGKT~LAraiA 225 (704)
++|+||.|.|||++.|.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999997
No 418
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.52 E-value=0.0052 Score=64.84 Aligned_cols=67 Identities=21% Similarity=0.300 Sum_probs=43.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcC---CCEEEEe-Cccccc-----h-hh-hhHHHHHHHHHHHhhCCCeEEEEccch
Q 005285 206 GVLLSGPPGTGKTLFARTLAKESG---LPFVFAS-GAEFTD-----S-EK-SGAARINEMFSIARRNAPAFVFVDEID 272 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~g---~~~v~is-~s~~~~-----~-~~-~g~~~vr~lF~~Ak~~~P~ILfIDEiD 272 (704)
.+++.||+|+|||++++++..... ..++.+. ..++.- . .. ........+...+....|.+|+|+|+.
T Consensus 82 lilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 488999999999999999977653 2344332 111110 0 00 011124566677777889999999995
No 419
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.52 E-value=0.0025 Score=63.28 Aligned_cols=34 Identities=38% Similarity=0.701 Sum_probs=26.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCcccc
Q 005285 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~ 241 (704)
.|+|.||||+||||+|+.||+.+++ ..++..++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i--~hlstgd~~ 35 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGL--PHLDTGDIL 35 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC--cEEcHhHHh
Confidence 4899999999999999999999554 455544433
No 420
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.52 E-value=0.0098 Score=58.95 Aligned_cols=72 Identities=22% Similarity=0.344 Sum_probs=42.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHc-------------CCCEEEEeCccccch-----------h-------hhh-------
Q 005285 206 GVLLSGPPGTGKTLFARTLAKES-------------GLPFVFASGAEFTDS-----------E-------KSG------- 247 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~-------------g~~~v~is~s~~~~~-----------~-------~~g------- 247 (704)
-++++||||+|||+++..+|... +.+++++++..-... . ...
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~ 113 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNWGCI 113 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E-EE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeeccccccc
Confidence 47899999999999999987643 346788876652210 0 000
Q ss_pred ------------HHHHHHHHHHHhh-CCCeEEEEccchhhhcc
Q 005285 248 ------------AARINEMFSIARR-NAPAFVFVDEIDAIAGR 277 (704)
Q Consensus 248 ------------~~~vr~lF~~Ak~-~~P~ILfIDEiDal~~~ 277 (704)
...+..+.+.++. ..|.+|+||-+..+...
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 114 RLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp ---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred eeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 1113345555666 56899999999999754
No 421
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.52 E-value=0.012 Score=68.20 Aligned_cols=26 Identities=38% Similarity=0.547 Sum_probs=23.4
Q ss_pred CccCceEEEEcCCCChHHHHHHHHHH
Q 005285 201 VQFVRGVLLSGPPGTGKTLFARTLAK 226 (704)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAraiA~ 226 (704)
+++...+|+.||+|||||+|.||+|+
T Consensus 416 v~~G~~llI~G~SG~GKTsLlRaiaG 441 (604)
T COG4178 416 VRPGERLLITGESGAGKTSLLRALAG 441 (604)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhc
Confidence 45667799999999999999999998
No 422
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.51 E-value=0.0023 Score=65.23 Aligned_cols=33 Identities=33% Similarity=0.692 Sum_probs=27.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHcCCCEEEEeCcccc
Q 005285 207 VLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (704)
Q Consensus 207 vLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~ 241 (704)
|+++||||+|||++|+.+|..+|++.+. ..++.
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is--~~dl~ 35 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIS--TGDML 35 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEE--CCccH
Confidence 8999999999999999999999977664 44443
No 423
>PRK10536 hypothetical protein; Provisional
Probab=96.50 E-value=0.0092 Score=62.41 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=20.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 005285 206 GVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e 227 (704)
-+++.||+|||||+||.++|.+
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999884
No 424
>PLN02674 adenylate kinase
Probab=96.50 E-value=0.0044 Score=64.50 Aligned_cols=39 Identities=23% Similarity=0.394 Sum_probs=31.1
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccc
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~ 242 (704)
+.+..++|.||||+||||+|+.+|..+|++.+ +..++..
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~hi--s~GdllR 67 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCHL--ATGDMLR 67 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCcEE--chhHHHH
Confidence 34567999999999999999999999987654 5555543
No 425
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.49 E-value=0.0017 Score=63.37 Aligned_cols=30 Identities=30% Similarity=0.507 Sum_probs=26.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCEEEEe
Q 005285 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~g~~~v~is 236 (704)
-++++|.||||||++++.++ ++|.+.++++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 47899999999999999999 9999987654
No 426
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.48 E-value=0.0087 Score=49.71 Aligned_cols=31 Identities=29% Similarity=0.529 Sum_probs=24.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHc-CCCEEEEeC
Q 005285 207 VLLSGPPGTGKTLFARTLAKES-GLPFVFASG 237 (704)
Q Consensus 207 vLL~GPPGTGKT~LAraiA~e~-g~~~v~is~ 237 (704)
+.+.|+||+|||+++++++..+ +.++..++.
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~ 33 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE 33 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE
Confidence 6789999999999999999985 345554443
No 427
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.48 E-value=0.022 Score=63.29 Aligned_cols=111 Identities=19% Similarity=0.220 Sum_probs=60.2
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHc-------CCCEEEEeCccccch--h-----h----------hhHHHHHHHHHH
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKES-------GLPFVFASGAEFTDS--E-----K----------SGAARINEMFSI 257 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~-------g~~~v~is~s~~~~~--~-----~----------~g~~~vr~lF~~ 257 (704)
..|+.++|+||+|+||||++..+|..+ |..+..+++..+... . . .....+......
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 346789999999999999999998754 344544444443211 0 0 011122222233
Q ss_pred HhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCcccc
Q 005285 258 ARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEF 330 (704)
Q Consensus 258 Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aL 330 (704)
. ....+|+||.+.... .+. ..+..+...++..... .+.++|+-+|.....+...+
T Consensus 252 ~--~~~DlVLIDTaGr~~-----~~~---~~l~el~~~l~~~~~~--------~e~~LVlsat~~~~~~~~~~ 306 (388)
T PRK12723 252 S--KDFDLVLVDTIGKSP-----KDF---MKLAEMKELLNACGRD--------AEFHLAVSSTTKTSDVKEIF 306 (388)
T ss_pred h--CCCCEEEEcCCCCCc-----cCH---HHHHHHHHHHHhcCCC--------CeEEEEEcCCCCHHHHHHHH
Confidence 2 345799999986542 121 1244444444432211 12367777776666555433
No 428
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.47 E-value=0.012 Score=62.23 Aligned_cols=176 Identities=11% Similarity=0.105 Sum_probs=96.3
Q ss_pred ceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccchhhhhHHHH
Q 005285 172 EVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARI 251 (704)
Q Consensus 172 dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~~~~g~~~v 251 (704)
+++.-+++.+-+..+...|..| ..++||.|.+|+||++++|..|.-++..++.+....--. .......+
T Consensus 9 ~lVlf~~ai~hi~ri~RvL~~~----------~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~-~~~f~~dL 77 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRVLSQP----------RGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYS-IKDFKEDL 77 (268)
T ss_dssp -----HHHHHHHHHHHHHHCST----------TEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTH-HHHHHHHH
T ss_pred ceeeHHHHHHHHHHHHHHHcCC----------CCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcC-HHHHHHHH
Confidence 5566677777788888888777 356999999999999999999999999998877543111 12233457
Q ss_pred HHHHHHHh-hCCCeEEEEccchhh-----------hccCC----CCChhHHHHHHHHHHHhcCCcccCC----cccc--c
Q 005285 252 NEMFSIAR-RNAPAFVFVDEIDAI-----------AGRHA----RKDPRRRATFEALIAQLDGDKERTG----IDRF--S 309 (704)
Q Consensus 252 r~lF~~Ak-~~~P~ILfIDEiDal-----------~~~~~----~~~~e~~~~ln~LL~~ld~~~~~~~----~~~~--~ 309 (704)
+.++..|- ++.|.+++|+|-+-. ...+. =..+|.+..+..+-........... .+.| .
T Consensus 78 k~~~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~~~~~~~~~~F~~r 157 (268)
T PF12780_consen 78 KKALQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGISDSRESLYEFFIER 157 (268)
T ss_dssp HHHHHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--SSHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCCCchHHHHHHHHHH
Confidence 77766665 456888888775432 11110 1245555566555544432211100 0001 1
Q ss_pred cCccEEEEEEcCC-CCCC------cccccCCCccceeeeeCCCCHHHHHHHHHHHhcCC
Q 005285 310 LRQAVIFICATNR-PDEL------DLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGK 361 (704)
Q Consensus 310 ~~~~ViVIaaTN~-p~~L------D~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~ 361 (704)
.+++.-||.+-+. .+.+ -|+|.. ++ ....+...+.+....+-..++...
T Consensus 158 vr~nLHivl~~sp~~~~~r~~~~~fPaL~~--~c-tIdW~~~W~~eaL~~Va~~~l~~~ 213 (268)
T PF12780_consen 158 VRKNLHIVLCMSPVGPNFRDRCRSFPALVN--CC-TIDWFDPWPEEALLSVANKFLSDI 213 (268)
T ss_dssp HCCCEEEEEEESTTTTCCCHHHHHHCCHHH--HS-EEEEEES--HHHHHHHHHHHCCHH
T ss_pred HHhheeEEEEECCCCchHHHHHHhCcchhc--cc-EEEeCCcCCHHHHHHHHHHHHHhh
Confidence 2234433333322 2222 355554 33 456677778888888877776643
No 429
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.47 E-value=0.02 Score=57.56 Aligned_cols=21 Identities=38% Similarity=0.673 Sum_probs=19.6
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 005285 205 RGVLLSGPPGTGKTLFARTLA 225 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA 225 (704)
+.++|.||.|+|||+|.|.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 469999999999999999998
No 430
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.45 E-value=0.0075 Score=74.79 Aligned_cols=144 Identities=19% Similarity=0.207 Sum_probs=91.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccch---hhh------h-HHHHHHHHHHHhhCCCeEEEEccchhh
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS---EKS------G-AARINEMFSIARRNAPAFVFVDEIDAI 274 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~---~~~------g-~~~vr~lF~~Ak~~~P~ILfIDEiDal 274 (704)
-.+|+.||..+|||++...+|++.|-.|+.|+-.+-.+. .|. | .+--..+.-.|..+. --|++||+.--
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G-yWIVLDELNLA 967 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG-YWIVLDELNLA 967 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC-cEEEeeccccC
Confidence 359999999999999999999999999999997764432 110 1 011112223343333 46788999744
Q ss_pred hccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCC------CCcccccCCCccceeeeeCCCCHH
Q 005285 275 AGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPD------ELDLEFVRPGRIDRRLYIGLPDAK 348 (704)
Q Consensus 275 ~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~------~LD~aLlRpgRfd~~I~v~~Pd~~ 348 (704)
.. ..-..+|.||..-.............+..++.++||-|.|. .|..|++. || ..++|.--..+
T Consensus 968 pT-------DVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RF-lE~hFddiped 1037 (4600)
T COG5271 968 PT-------DVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RF-LEMHFDDIPED 1037 (4600)
T ss_pred cH-------HHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hh-HhhhcccCcHH
Confidence 21 23334555554322222222222234455678888888775 36778887 88 56778777788
Q ss_pred HHHHHHHHHhc
Q 005285 349 QRVQIFDVHSA 359 (704)
Q Consensus 349 eR~~Il~~~l~ 359 (704)
+...||+..+.
T Consensus 1038 Ele~ILh~rc~ 1048 (4600)
T COG5271 1038 ELEEILHGRCE 1048 (4600)
T ss_pred HHHHHHhccCc
Confidence 88889876543
No 431
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.44 E-value=0.0053 Score=64.40 Aligned_cols=44 Identities=41% Similarity=0.674 Sum_probs=36.3
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHH---cCCCEEEEeCccccch
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEFTDS 243 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e---~g~~~v~is~s~~~~~ 243 (704)
|.+..+.+|++|+||||||+|+..++.+ .|.|+++++..+-.+.
T Consensus 19 G~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~ 65 (260)
T COG0467 19 GLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEE 65 (260)
T ss_pred CCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHH
Confidence 5667778999999999999999988653 4899999998776554
No 432
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.43 E-value=0.0058 Score=66.44 Aligned_cols=70 Identities=24% Similarity=0.291 Sum_probs=45.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccchhh---------hhHHHHH---HHHHHHhhCCCeEEEEccc
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEK---------SGAARIN---EMFSIARRNAPAFVFVDEI 271 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~~~---------~g~~~vr---~lF~~Ak~~~P~ILfIDEi 271 (704)
.+.+.|.|+||+|||+|++++++..+.+++.-.+.++..... .....+. .....+...+..|||+|-
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~~~~~~~~~~l~~~d~~~i~~g~~~~~~~~~~~a~~iif~D~- 240 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYVEEKLGGDEALQYSDYAQIALGQQRYIDYAVRHAHKIAFIDT- 240 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCeEEEcC-
Confidence 457999999999999999999999999987665554433211 0001111 112334445667999994
Q ss_pred hhh
Q 005285 272 DAI 274 (704)
Q Consensus 272 Dal 274 (704)
+.+
T Consensus 241 ~~~ 243 (325)
T TIGR01526 241 DFI 243 (325)
T ss_pred ChH
Confidence 544
No 433
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.40 E-value=0.0044 Score=66.88 Aligned_cols=72 Identities=18% Similarity=0.302 Sum_probs=46.8
Q ss_pred CccCceEEEEcCCCChHHHHHHHHHHHcCC--CEEEEe-Ccccc-------ch----h--hhhHHHHHHHHHHHhhCCCe
Q 005285 201 VQFVRGVLLSGPPGTGKTLFARTLAKESGL--PFVFAS-GAEFT-------DS----E--KSGAARINEMFSIARRNAPA 264 (704)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAraiA~e~g~--~~v~is-~s~~~-------~~----~--~~g~~~vr~lF~~Ak~~~P~ 264 (704)
++...++++.||+|+|||++++++++...- ..+.+. ..++. .. . +...-.+.+++..+....|.
T Consensus 141 v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd 220 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPD 220 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCC
Confidence 345678999999999999999999987632 222221 00110 00 0 01112356777778888999
Q ss_pred EEEEccch
Q 005285 265 FVFVDEID 272 (704)
Q Consensus 265 ILfIDEiD 272 (704)
+|++||+-
T Consensus 221 ~ii~gE~r 228 (308)
T TIGR02788 221 RIILGELR 228 (308)
T ss_pred eEEEeccC
Confidence 99999985
No 434
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.40 E-value=0.031 Score=62.42 Aligned_cols=37 Identities=27% Similarity=0.367 Sum_probs=27.7
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc----CCCEEEEeCcc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES----GLPFVFASGAE 239 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~----g~~~v~is~s~ 239 (704)
.+..++|.||+|+||||++..+|... |..+..+++..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt 262 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDN 262 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccc
Confidence 45668899999999999999998754 44455555444
No 435
>PRK01184 hypothetical protein; Provisional
Probab=96.39 E-value=0.0029 Score=62.59 Aligned_cols=29 Identities=38% Similarity=0.708 Sum_probs=25.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCEEEE
Q 005285 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~g~~~v~i 235 (704)
-|+|+||||+||||+++ ++.+.|++++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 58899999999999998 789999888654
No 436
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.38 E-value=0.0072 Score=68.12 Aligned_cols=70 Identities=23% Similarity=0.349 Sum_probs=45.0
Q ss_pred cCceE-EEEcCCCChHHHHHHHHHHHcCCCEE-EEeCccccchhhhhH------HH----HHHHHHHHhhCCCeEEEEcc
Q 005285 203 FVRGV-LLSGPPGTGKTLFARTLAKESGLPFV-FASGAEFTDSEKSGA------AR----INEMFSIARRNAPAFVFVDE 270 (704)
Q Consensus 203 ~p~gv-LL~GPPGTGKT~LAraiA~e~g~~~v-~is~s~~~~~~~~g~------~~----vr~lF~~Ak~~~P~ILfIDE 270 (704)
.|.|+ |+.||.|+|||++..++..+++-+.. .++..|-++....|. .+ .....+....+.|.||++.|
T Consensus 256 ~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGE 335 (500)
T COG2804 256 RPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGE 335 (500)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeeecCCcceeecccccCCCHHHHHHHHhccCCCeEEEec
Confidence 34565 66699999999999999988876554 334444333211110 01 22344445567899999999
Q ss_pred ch
Q 005285 271 ID 272 (704)
Q Consensus 271 iD 272 (704)
|-
T Consensus 336 IR 337 (500)
T COG2804 336 IR 337 (500)
T ss_pred cC
Confidence 95
No 437
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.38 E-value=0.0061 Score=61.66 Aligned_cols=87 Identities=22% Similarity=0.306 Sum_probs=47.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccchhhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhH
Q 005285 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRR 285 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~ 285 (704)
-++|+||+|||||.+|-++|+..|.|++..+.-........+..+-. .+...+-.=++|||-..- .+.-..
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~----~~el~~~~RiyL~~r~l~-----~G~i~a 73 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPT----PSELKGTRRIYLDDRPLS-----DGIINA 73 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT-------SGGGTT-EEEES----GG-----G-S--H
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCC----HHHHcccceeeecccccc-----CCCcCH
Confidence 46899999999999999999999999999987665554222221110 011111123888865432 123334
Q ss_pred HHHHHHHHHHhcCCcc
Q 005285 286 RATFEALIAQLDGDKE 301 (704)
Q Consensus 286 ~~~ln~LL~~ld~~~~ 301 (704)
......|+..++....
T Consensus 74 ~ea~~~Li~~v~~~~~ 89 (233)
T PF01745_consen 74 EEAHERLISEVNSYSA 89 (233)
T ss_dssp HHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHhccc
Confidence 4566777888877654
No 438
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.37 E-value=0.0039 Score=68.20 Aligned_cols=72 Identities=24% Similarity=0.347 Sum_probs=47.3
Q ss_pred CccCceEEEEcCCCChHHHHHHHHHHHcCC--CEEEEeC-cccc-----------ch--hhhhHHHHHHHHHHHhhCCCe
Q 005285 201 VQFVRGVLLSGPPGTGKTLFARTLAKESGL--PFVFASG-AEFT-----------DS--EKSGAARINEMFSIARRNAPA 264 (704)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAraiA~e~g~--~~v~is~-s~~~-----------~~--~~~g~~~vr~lF~~Ak~~~P~ 264 (704)
.+..+++|+.||+|+|||++++++++.... .++.+-- .++. .. .+.+.-....++..+....|.
T Consensus 159 v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD 238 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPD 238 (344)
T ss_pred HHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCC
Confidence 344678999999999999999999987643 2222110 0110 00 011122356788888888999
Q ss_pred EEEEccch
Q 005285 265 FVFVDEID 272 (704)
Q Consensus 265 ILfIDEiD 272 (704)
.|++.|+-
T Consensus 239 ~IivGEiR 246 (344)
T PRK13851 239 RILLGEMR 246 (344)
T ss_pred eEEEEeeC
Confidence 99999984
No 439
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.35 E-value=0.029 Score=64.74 Aligned_cols=77 Identities=25% Similarity=0.219 Sum_probs=51.8
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHH---cCCCEEEEeCccccchh-------hh----------------------h
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEFTDSE-------KS----------------------G 247 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e---~g~~~v~is~s~~~~~~-------~~----------------------g 247 (704)
|.+....++++||||+|||+|+..++.+ .|.++++++..+-.+.. +. .
T Consensus 269 G~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 348 (509)
T PRK09302 269 GFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGL 348 (509)
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCH
Confidence 5666677899999999999999998764 37888888765432110 00 0
Q ss_pred HHHHHHHHHHHhhCCCeEEEEccchhhhc
Q 005285 248 AARINEMFSIARRNAPAFVFVDEIDAIAG 276 (704)
Q Consensus 248 ~~~vr~lF~~Ak~~~P~ILfIDEiDal~~ 276 (704)
...+..+-.......+.+|+||-+..+..
T Consensus 349 ~~~~~~i~~~i~~~~~~~vVIDslt~l~~ 377 (509)
T PRK09302 349 EDHLIIIKREIEEFKPSRVAIDPLSALAR 377 (509)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 11122333344556788999999998853
No 440
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.33 E-value=0.0028 Score=57.98 Aligned_cols=22 Identities=45% Similarity=0.702 Sum_probs=20.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHc
Q 005285 207 VLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 207 vLL~GPPGTGKT~LAraiA~e~ 228 (704)
|+|.|+|||||||+|+.++..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 441
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.33 E-value=0.0089 Score=62.26 Aligned_cols=34 Identities=29% Similarity=0.608 Sum_probs=28.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccc
Q 005285 207 VLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEF 240 (704)
Q Consensus 207 vLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~ 240 (704)
|+|+|+||+|||++|++++..+ +.+++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 7899999999999999999876 567777765444
No 442
>PF13479 AAA_24: AAA domain
Probab=96.32 E-value=0.007 Score=61.69 Aligned_cols=67 Identities=22% Similarity=0.322 Sum_probs=39.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCEE-EEeCcc--c--c-c--h-hhhhHHHHHHHHHHH--hhCCCeEEEEccch
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFV-FASGAE--F--T-D--S-EKSGAARINEMFSIA--RRNAPAFVFVDEID 272 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g~~~v-~is~s~--~--~-~--~-~~~g~~~vr~lF~~A--k~~~P~ILfIDEiD 272 (704)
+-.++|||+||+|||++|..+ +-|++ .+..+. + . . . .......+.+.+..+ ....-..|+||-++
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis 78 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSIS 78 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHH
Confidence 456999999999999998888 43432 222220 0 0 0 0 111233455555443 23345699999988
Q ss_pred hh
Q 005285 273 AI 274 (704)
Q Consensus 273 al 274 (704)
.+
T Consensus 79 ~~ 80 (213)
T PF13479_consen 79 WL 80 (213)
T ss_pred HH
Confidence 86
No 443
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.32 E-value=0.024 Score=57.54 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=20.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHH
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAK 226 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~ 226 (704)
.+-++|.||.|+|||++.+.++.
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999964
No 444
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.32 E-value=0.0031 Score=61.10 Aligned_cols=32 Identities=38% Similarity=0.623 Sum_probs=22.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHcCCCEEEEeCcc
Q 005285 207 VLLSGPPGTGKTLFARTLAKESGLPFVFASGAE 239 (704)
Q Consensus 207 vLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~ 239 (704)
|.|+|+||||||||+++++.. |.+++.=.+..
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~E~ar~ 33 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVPEYARE 33 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE--TTHH
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEeecHHH
Confidence 789999999999999999988 88877433333
No 445
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.31 E-value=0.0061 Score=57.60 Aligned_cols=29 Identities=38% Similarity=0.536 Sum_probs=25.7
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCC
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESGLP 231 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g~~ 231 (704)
...-++|.|+.|+|||+++|.+++.+|.+
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 34568999999999999999999999865
No 446
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.30 E-value=0.023 Score=56.08 Aligned_cols=106 Identities=19% Similarity=0.232 Sum_probs=61.2
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCC--CEEEEeCccccc---------------------------h-h--hhhHHH
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESGL--PFVFASGAEFTD---------------------------S-E--KSGAAR 250 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g~--~~v~is~s~~~~---------------------------~-~--~~g~~~ 250 (704)
...-+.|.||+|+|||+|++.+++.... --+.+++.+... . . ..+-.+
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~ 103 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGER 103 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHH
Confidence 4456899999999999999999986421 122333322110 0 0 011122
Q ss_pred HHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCC
Q 005285 251 INEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDEL 326 (704)
Q Consensus 251 vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~L 326 (704)
-+-.+..|-...|.++++||--+= -+......+.+++..+.... +..+|.+|+.++.+
T Consensus 104 qrl~laral~~~p~llllDEP~~~------LD~~~~~~~~~~l~~~~~~~------------~~tiii~sh~~~~~ 161 (180)
T cd03214 104 QRVLLARALAQEPPILLLDEPTSH------LDIAHQIELLELLRRLARER------------GKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccC------CCHHHHHHHHHHHHHHHHhc------------CCEEEEEeCCHHHH
Confidence 334455566678999999997532 24444556666666653210 13566677766544
No 447
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.29 E-value=0.036 Score=61.43 Aligned_cols=37 Identities=27% Similarity=0.299 Sum_probs=29.1
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCcc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAE 239 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~ 239 (704)
.|+-++|.||+|+|||+++..+|..+ |..+..+++..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt 279 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDH 279 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCC
Confidence 46789999999999999999998765 45555566544
No 448
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.28 E-value=0.045 Score=56.87 Aligned_cols=131 Identities=14% Similarity=0.222 Sum_probs=73.9
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCC---CEEEEeCccccchh----------h----hh-H---HH----HHHHHH
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKESGL---PFVFASGAEFTDSE----------K----SG-A---AR----INEMFS 256 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~g~---~~v~is~s~~~~~~----------~----~g-~---~~----vr~lF~ 256 (704)
+.|-.+.+.|++|||||++++.+-....- +++.++. .....+ . .. . .+ +.....
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~-~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~ 89 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITP-EYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIK 89 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEec-CCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhh
Confidence 45667999999999999999999765532 2232322 111100 0 00 0 00 111111
Q ss_pred HHhh---CCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCC
Q 005285 257 IARR---NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRP 333 (704)
Q Consensus 257 ~Ak~---~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRp 333 (704)
.... ..+++|++|++-. + ....+.+.+++. .|.. -++-+|.++...-.||+.++.
T Consensus 90 k~~~~k~~~~~LiIlDD~~~---~-----~~k~~~l~~~~~--~gRH-----------~~is~i~l~Q~~~~lp~~iR~- 147 (241)
T PF04665_consen 90 KSPQKKNNPRFLIILDDLGD---K-----KLKSKILRQFFN--NGRH-----------YNISIIFLSQSYFHLPPNIRS- 147 (241)
T ss_pred hhcccCCCCCeEEEEeCCCC---c-----hhhhHHHHHHHh--cccc-----------cceEEEEEeeecccCCHHHhh-
Confidence 1111 3368999999732 1 122334555553 2211 237788888888899999876
Q ss_pred CccceeeeeCCCCHHHHHHHHHHH
Q 005285 334 GRIDRRLYIGLPDAKQRVQIFDVH 357 (704)
Q Consensus 334 gRfd~~I~v~~Pd~~eR~~Il~~~ 357 (704)
-.+..+-+. -+......|++.+
T Consensus 148 -n~~y~i~~~-~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 148 -NIDYFIIFN-NSKRDLENIYRNM 169 (241)
T ss_pred -cceEEEEec-CcHHHHHHHHHhc
Confidence 677767665 4666666666644
No 449
>PRK04182 cytidylate kinase; Provisional
Probab=96.28 E-value=0.0039 Score=60.87 Aligned_cols=29 Identities=52% Similarity=0.762 Sum_probs=26.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCEEE
Q 005285 206 GVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~g~~~v~ 234 (704)
.|+|.|+||+|||++++.+|..+|.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 47899999999999999999999998874
No 450
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.26 E-value=0.0034 Score=60.14 Aligned_cols=33 Identities=39% Similarity=0.596 Sum_probs=26.8
Q ss_pred EEcCCCChHHHHHHHHHHHcCCCEEEEeCccccch
Q 005285 209 LSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS 243 (704)
Q Consensus 209 L~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~ 243 (704)
|.||||+|||++|+.||.+.|.+ .++..++...
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~--~is~~~llr~ 33 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLV--HISVGDLLRE 33 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSE--EEEHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcc--eechHHHHHH
Confidence 68999999999999999999765 5566665543
No 451
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.26 E-value=0.015 Score=56.89 Aligned_cols=35 Identities=31% Similarity=0.400 Sum_probs=28.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccc
Q 005285 206 GVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEF 240 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~ 240 (704)
-+++.||||+|||++++.+|..+ |..+..+++..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 36899999999999999998764 667777776643
No 452
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.24 E-value=0.0041 Score=66.36 Aligned_cols=35 Identities=26% Similarity=0.468 Sum_probs=27.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc-CCCEEEEeCccc
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKES-GLPFVFASGAEF 240 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~-g~~~v~is~s~~ 240 (704)
++-++|.|+||||||++|+.++..+ +.. .++..++
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~~--~l~~D~~ 37 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKAV--NVNRDDL 37 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCE--EEeccHH
Confidence 4568999999999999999999998 544 4444343
No 453
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.24 E-value=0.017 Score=61.53 Aligned_cols=38 Identities=26% Similarity=0.323 Sum_probs=30.0
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc----C-CCEEEEeCccc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES----G-LPFVFASGAEF 240 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~----g-~~~v~is~s~~ 240 (704)
.++.++|.||+|+|||+++..+|..+ | ..+..+++..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~ 235 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTY 235 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCcc
Confidence 46778999999999999999998754 4 66777776553
No 454
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.21 E-value=0.023 Score=56.03 Aligned_cols=89 Identities=25% Similarity=0.321 Sum_probs=52.6
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCC--EEEEeCc-----------------------ccc-c-hh-------hhhH
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESGLP--FVFASGA-----------------------EFT-D-SE-------KSGA 248 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g~~--~v~is~s-----------------------~~~-~-~~-------~~g~ 248 (704)
...-+.|.||.|+|||+|++++++..... -+.+++. .+. . .. ..+-
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS~G 104 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLSGG 104 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecCCHH
Confidence 34567899999999999999999753210 0111110 000 0 00 1122
Q ss_pred HHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhc
Q 005285 249 ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLD 297 (704)
Q Consensus 249 ~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld 297 (704)
.+-|-.+..|-...|.++++||--+= -+......+.+++..+.
T Consensus 105 ~~qr~~la~al~~~p~llilDEP~~~------LD~~~~~~l~~~l~~~~ 147 (178)
T cd03229 105 QQQRVALARALAMDPDVLLLDEPTSA------LDPITRREVRALLKSLQ 147 (178)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCccc------CCHHHHHHHHHHHHHHH
Confidence 33455566777788999999997542 24455556666666654
No 455
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.20 E-value=0.031 Score=55.99 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=23.6
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHc
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
.....+.|.||+|+|||+|.+.+|+..
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 345678999999999999999999876
No 456
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.19 E-value=0.018 Score=60.60 Aligned_cols=101 Identities=17% Similarity=0.181 Sum_probs=58.8
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHcC---------CCEEEEeCcc-ccch-hhhhH--------------------
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKESG---------LPFVFASGAE-FTDS-EKSGA-------------------- 248 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e~g---------~~~v~is~s~-~~~~-~~~g~-------------------- 248 (704)
|+....-.=|+||||+|||.||..+|-... ..+++++... |... ...-.
T Consensus 34 Gi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~ 113 (256)
T PF08423_consen 34 GIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVF 113 (256)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-S
T ss_pred CCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecC
Confidence 343333345999999999999999986543 3488888665 2211 00000
Q ss_pred ------HHHHHHHHHHhhCCCeEEEEccchhhhccCC---CCChhHHHHHHHHHHHhcCCc
Q 005285 249 ------ARINEMFSIARRNAPAFVFVDEIDAIAGRHA---RKDPRRRATFEALIAQLDGDK 300 (704)
Q Consensus 249 ------~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~---~~~~e~~~~ln~LL~~ld~~~ 300 (704)
..+..+-.........+|+||-|-+++.... +...++.+.+..++..|....
T Consensus 114 ~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaalfr~e~~~~~~~~~R~~~L~~~~~~L~~lA 174 (256)
T PF08423_consen 114 DLEELLELLEQLPKLLSESKIKLIVIDSIAALFRSEFSGRGDLAERQRMLARLARILKRLA 174 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSHHHHHHSGSTTTHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccccceEEEEecchHHHHHHHHccchhhHHHHHHHHHHHHHHHHHH
Confidence 0011222222345568999999999975321 122455667777766666543
No 457
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.18 E-value=0.0046 Score=59.89 Aligned_cols=29 Identities=41% Similarity=0.697 Sum_probs=26.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCEEE
Q 005285 206 GVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~g~~~v~ 234 (704)
-|.++|++|+|||++|+.+|+.+|.+++.
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~ 30 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLIS 30 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 37899999999999999999999999764
No 458
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.17 E-value=0.028 Score=65.87 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=23.8
Q ss_pred CccCceEEEEcCCCChHHHHHHHHHHHc
Q 005285 201 VQFVRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
+++..-+.+.||+|+|||||++.+++..
T Consensus 366 i~~G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 366 IPAGKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3455669999999999999999999854
No 459
>PRK08233 hypothetical protein; Provisional
Probab=96.14 E-value=0.0066 Score=59.43 Aligned_cols=34 Identities=15% Similarity=0.221 Sum_probs=26.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcC-CCEEEEeCc
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKESG-LPFVFASGA 238 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e~g-~~~v~is~s 238 (704)
.-|.+.|+||+||||+|+.++..++ .+++..+..
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~ 38 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRY 38 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCE
Confidence 4578889999999999999999985 445544433
No 460
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.14 E-value=0.012 Score=65.05 Aligned_cols=67 Identities=24% Similarity=0.332 Sum_probs=43.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcC-----CCEEEEeCc-ccc------------chhhhhHHHHHHHHHHHhhCCCeEEE
Q 005285 206 GVLLSGPPGTGKTLFARTLAKESG-----LPFVFASGA-EFT------------DSEKSGAARINEMFSIARRNAPAFVF 267 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~g-----~~~v~is~s-~~~------------~~~~~g~~~vr~lF~~Ak~~~P~ILf 267 (704)
.+|++||+|+||||+++++..... ..++.+--. ++. ...+........+...+....|.+|+
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~ 230 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIG 230 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEEe
Confidence 578999999999999999987662 334433211 111 00111112345566677778999999
Q ss_pred Eccch
Q 005285 268 VDEID 272 (704)
Q Consensus 268 IDEiD 272 (704)
+.|+-
T Consensus 231 vGEiR 235 (372)
T TIGR02525 231 VGEIR 235 (372)
T ss_pred eCCCC
Confidence 99995
No 461
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.13 E-value=0.011 Score=64.09 Aligned_cols=82 Identities=21% Similarity=0.326 Sum_probs=53.5
Q ss_pred ccc-ceecCcccHHHHHHHHHHhCCchhhhhcCC-ccCceEEEEcCCCChHHHHHHHHHHHcC-CCEEEEeCccccch-h
Q 005285 169 MYK-EVVLGGDVWDLLDELMIYMGNPMQYYERGV-QFVRGVLLSGPPGTGKTLFARTLAKESG-LPFVFASGAEFTDS-E 244 (704)
Q Consensus 169 ~f~-dVvG~~~~k~~L~elv~~l~~p~~~~~~g~-~~p~gvLL~GPPGTGKT~LAraiA~e~g-~~~v~is~s~~~~~-~ 244 (704)
.|+ ++.|.+ +.|.++|++++.. ..|. ..-+-++|.||+|+|||+|++.+.+-+. .+++.+..+-..+. .
T Consensus 58 ~f~~~~~G~~---~~i~~lV~~fk~A----A~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm~e~PL 130 (358)
T PF08298_consen 58 FFEDEFYGME---ETIERLVNYFKSA----AQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPMHEEPL 130 (358)
T ss_pred CccccccCcH---HHHHHHHHHHHHH----HhccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCccccChh
Confidence 355 677766 5678888887765 2232 3456678999999999999999977552 36666654444443 3
Q ss_pred hhhHHHHHHHHHH
Q 005285 245 KSGAARINEMFSI 257 (704)
Q Consensus 245 ~~g~~~vr~lF~~ 257 (704)
......+|..|..
T Consensus 131 ~L~P~~~r~~~~~ 143 (358)
T PF08298_consen 131 HLFPKELRREFED 143 (358)
T ss_pred hhCCHhHHHHHHH
Confidence 3334556665543
No 462
>PRK10867 signal recognition particle protein; Provisional
Probab=96.12 E-value=0.027 Score=63.52 Aligned_cols=72 Identities=19% Similarity=0.196 Sum_probs=46.6
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHc----CCCEEEEeCccccchhh---------------------hhHHHHHHHHH
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKES----GLPFVFASGAEFTDSEK---------------------SGAARINEMFS 256 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~----g~~~v~is~s~~~~~~~---------------------~g~~~vr~lF~ 256 (704)
..|.-++++||+|+||||++..+|..+ |..+..+++..+..... ......+....
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~ 177 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALE 177 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHH
Confidence 457889999999999999887777643 67777777764432100 01112334455
Q ss_pred HHhhCCCeEEEEccchh
Q 005285 257 IARRNAPAFVFVDEIDA 273 (704)
Q Consensus 257 ~Ak~~~P~ILfIDEiDa 273 (704)
.++.....+|+||=.-.
T Consensus 178 ~a~~~~~DvVIIDTaGr 194 (433)
T PRK10867 178 EAKENGYDVVIVDTAGR 194 (433)
T ss_pred HHHhcCCCEEEEeCCCC
Confidence 56666667899887643
No 463
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.11 E-value=0.018 Score=63.29 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHc
Q 005285 206 GVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
-++|+||||||||++++.+|+..
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i 157 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAV 157 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 36999999999999999998865
No 464
>PRK14526 adenylate kinase; Provisional
Probab=96.11 E-value=0.0051 Score=62.73 Aligned_cols=34 Identities=29% Similarity=0.559 Sum_probs=28.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCcccc
Q 005285 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~ 241 (704)
.++|.||||+|||++++.+|+.++.+++ +..++.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~i--s~G~ll 35 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHI--STGDLF 35 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcee--ecChHH
Confidence 3889999999999999999999887664 445543
No 465
>PLN02199 shikimate kinase
Probab=96.10 E-value=0.0091 Score=63.57 Aligned_cols=32 Identities=31% Similarity=0.480 Sum_probs=29.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCCCEEEEe
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is 236 (704)
++|+|.|.+|+|||++++.+|+.+|.+|+..+
T Consensus 103 ~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 103 RSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 48999999999999999999999999998543
No 466
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.08 E-value=0.029 Score=65.82 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=24.1
Q ss_pred CccCceEEEEcCCCChHHHHHHHHHHHc
Q 005285 201 VQFVRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
+++..-+.|.||+|+|||||++.+++..
T Consensus 373 i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 373 LPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4455679999999999999999998865
No 467
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.05 E-value=0.0087 Score=60.36 Aligned_cols=23 Identities=39% Similarity=0.625 Sum_probs=17.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHc
Q 005285 206 GVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
-.++.||||||||+++.+++..+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 37899999999998777776654
No 468
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.05 E-value=0.012 Score=65.79 Aligned_cols=37 Identities=30% Similarity=0.409 Sum_probs=30.7
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCcc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAE 239 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~ 239 (704)
..+.|.|.|++|||||||++++|..+|.+.+.--+.+
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~ 254 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGRE 254 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHH
Confidence 4577999999999999999999999998876543333
No 469
>PLN02459 probable adenylate kinase
Probab=96.04 E-value=0.0068 Score=63.60 Aligned_cols=35 Identities=29% Similarity=0.546 Sum_probs=28.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCcccc
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~ 241 (704)
..++|.||||+|||++|+.+|..+|++.+ +..++.
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~~~~i--s~gdll 64 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLGVPHI--ATGDLV 64 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEE--eCcHHH
Confidence 45888999999999999999999986654 555544
No 470
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.04 E-value=0.034 Score=56.31 Aligned_cols=116 Identities=18% Similarity=0.307 Sum_probs=66.5
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHH---cCCCEEEEeCcc----------------------------------ccc
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAE----------------------------------FTD 242 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e---~g~~~v~is~s~----------------------------------~~~ 242 (704)
|++.+.-+++.|+.|||||.|...++-- -|....+++... +..
T Consensus 24 GiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~~ 103 (235)
T COG2874 24 GIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPVNW 103 (235)
T ss_pred CCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEeccccccc
Confidence 3555566788899999999999999642 133333332211 111
Q ss_pred hhhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCC
Q 005285 243 SEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNR 322 (704)
Q Consensus 243 ~~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~ 322 (704)
........+..+.+..+.+...||+||-+..+.... ..+.+.+++..+..+.... . +||. |-+
T Consensus 104 ~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~------~~~~vl~fm~~~r~l~d~g---------K-vIil-Tvh 166 (235)
T COG2874 104 GRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD------SEDAVLNFMTFLRKLSDLG---------K-VIIL-TVH 166 (235)
T ss_pred ChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc------cHHHHHHHHHHHHHHHhCC---------C-EEEE-EeC
Confidence 111223335566665666667899999999997431 1223444555444433221 1 3333 556
Q ss_pred CCCCcccccC
Q 005285 323 PDELDLEFVR 332 (704)
Q Consensus 323 p~~LD~aLlR 332 (704)
|..++.+++-
T Consensus 167 p~~l~e~~~~ 176 (235)
T COG2874 167 PSALDEDVLT 176 (235)
T ss_pred hhhcCHHHHH
Confidence 7888887765
No 471
>PTZ00494 tuzin-like protein; Provisional
Probab=96.02 E-value=0.89 Score=51.05 Aligned_cols=183 Identities=14% Similarity=0.135 Sum_probs=103.9
Q ss_pred hcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccc---------------hhhhhHHHHHHHHHHHhhC-
Q 005285 198 ERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD---------------SEKSGAARINEMFSIARRN- 261 (704)
Q Consensus 198 ~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~---------------~~~~g~~~vr~lF~~Ak~~- 261 (704)
++....|+-+.|.|..|+||++++|.--..-++|.++++...-.+ .-|.-...+.+.|..|+..
T Consensus 389 qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~paV~VDVRg~EDtLrsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~ 468 (664)
T PTZ00494 389 QMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGVALVHVDVGGTEDTLRSVVRALGVSNVEVCGDLLGFVEEAMRGATVKA 468 (664)
T ss_pred hccCCCCcEEEEecCCCCCchHHHHHHHHHcCCCeEEEEecCCcchHHHHHHHhCCCChhhhccHHHHHHHHHHHHHHhc
Confidence 334568999999999999999999988888899988776432111 1122234567778888751
Q ss_pred --CCeEEE--EccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCc--ccccCCCc
Q 005285 262 --APAFVF--VDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELD--LEFVRPGR 335 (704)
Q Consensus 262 --~P~ILf--IDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD--~aLlRpgR 335 (704)
.+-+|+ |-|=+.| .+..|..+..--... -.. +|+- -..+.|. ...+. |
T Consensus 469 ~g~~P~lVlkLREGssL-----------~RVYnE~vaLacDrR----------lCH-vv~E--VplESLT~~n~~LP--R 522 (664)
T PTZ00494 469 SDGVPFLVMRLREGSDL-----------GRVYGEVVSLVSDCQ----------ACH-IVLA--VPMKALTPLNVSSR--R 522 (664)
T ss_pred CCCCCEEEEEeccCCcH-----------HHHHHHHHHHHccch----------hhe-eeee--chHhhhchhhccCc--c
Confidence 122333 3444433 234455443321110 011 2221 1122222 22333 8
Q ss_pred cceeeeeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Q 005285 336 IDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQ 415 (704)
Q Consensus 336 fd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al~~~ 415 (704)
+|. ..+|.-+.++-.+..++.+. .+++..+.. +.|.+..||..|+- +..-.+-....-|.+-+.+|+.+.
T Consensus 523 LDF-y~VPnFSr~QAf~YtqH~lD------al~l~~Fve-vvGTnSnDlDEL~A--Av~qRrvs~~~YTnqkLlkAMRqL 592 (664)
T PTZ00494 523 LDF-YCIPPFSRRQAFAYAEHTLD------ALDLVCFVE-VVGTRSSDVDELCA--ALRQRGVDPVTYTSLMLARAMRRL 592 (664)
T ss_pred cee-EecCCcCHHHHHHHHhcccc------hhhhhhhhh-hhcCCcccHHHHHH--HHHHcCCCHHHHhHHHHHHHHHHH
Confidence 884 56788888887777665443 334444443 57888889998874 222222222334667777887764
Q ss_pred H
Q 005285 416 L 416 (704)
Q Consensus 416 ~ 416 (704)
.
T Consensus 593 q 593 (664)
T PTZ00494 593 Q 593 (664)
T ss_pred H
Confidence 3
No 472
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.01 E-value=0.016 Score=56.22 Aligned_cols=39 Identities=28% Similarity=0.472 Sum_probs=32.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccccc
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTD 242 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~~ 242 (704)
|..|.|+|.||+|||++|+++...+ |.+.+.+++..+..
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~ 43 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRH 43 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhh
Confidence 4568899999999999999998765 89999999887654
No 473
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.01 E-value=0.019 Score=57.43 Aligned_cols=25 Identities=32% Similarity=0.276 Sum_probs=21.8
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHH
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e 227 (704)
...-+.|.||+|+|||+|++.+++.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4456899999999999999999973
No 474
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=96.00 E-value=0.01 Score=62.82 Aligned_cols=39 Identities=21% Similarity=0.158 Sum_probs=26.5
Q ss_pred HHHhCCchhhhhcC-CccCceEEEEcCCCChHHHHHHHHH
Q 005285 187 MIYMGNPMQYYERG-VQFVRGVLLSGPPGTGKTLFARTLA 225 (704)
Q Consensus 187 v~~l~~p~~~~~~g-~~~p~gvLL~GPPGTGKT~LAraiA 225 (704)
..+|++......++ ...|--.++|||.|+|||.|.|.+-
T Consensus 69 ~~~L~~dG~~~SLN~~~qP~I~~VYGPTG~GKSqLlRNLi 108 (369)
T PF02456_consen 69 SPYLRPDGSCPSLNYGLQPFIGVVYGPTGSGKSQLLRNLI 108 (369)
T ss_pred HHhcCcCCcccccccCCCceEEEEECCCCCCHHHHHHHhh
Confidence 33454433333332 3457777899999999999999884
No 475
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.98 E-value=0.022 Score=62.99 Aligned_cols=42 Identities=19% Similarity=0.396 Sum_probs=30.6
Q ss_pred ccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc
Q 005285 178 DVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 178 ~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
+.+..+..+++.+.+ ..|..+++.||.|||||++.+++...+
T Consensus 5 eQ~~~~~~v~~~~~~---------~~~~~~fv~G~~GtGKs~l~~~i~~~~ 46 (364)
T PF05970_consen 5 EQRRVFDTVIEAIEN---------EEGLNFFVTGPAGTGKSFLIKAIIDYL 46 (364)
T ss_pred HHHHHHHHHHHHHHc---------cCCcEEEEEcCCCCChhHHHHHHHHHh
Confidence 344455555554433 356789999999999999999997765
No 476
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.97 E-value=0.0078 Score=59.09 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=24.7
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcC
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKESG 229 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~g 229 (704)
..|.-++|.|+||+|||++|+++++.+.
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3567899999999999999999998875
No 477
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.97 E-value=0.036 Score=62.25 Aligned_cols=39 Identities=23% Similarity=0.281 Sum_probs=31.0
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccc
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEF 240 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~ 240 (704)
..|.-++|+|++|+||||++..+|..+ |..+..+++..+
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~ 139 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTF 139 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCccc
Confidence 347788999999999999999998755 667777766443
No 478
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.96 E-value=0.039 Score=62.16 Aligned_cols=71 Identities=21% Similarity=0.229 Sum_probs=46.3
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHH----cCCCEEEEeCccccchh-------h--------------hhHHHHHHHHH
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKE----SGLPFVFASGAEFTDSE-------K--------------SGAARINEMFS 256 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e----~g~~~v~is~s~~~~~~-------~--------------~g~~~vr~lF~ 256 (704)
..|..++++|++|+|||+++..+|.. .|..+..++|..+.... + ..........+
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 35788999999999999998888765 36677777776543210 0 00112234555
Q ss_pred HHhhCCCeEEEEccch
Q 005285 257 IARRNAPAFVFVDEID 272 (704)
Q Consensus 257 ~Ak~~~P~ILfIDEiD 272 (704)
.++.....+|+||=.-
T Consensus 177 ~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 177 YAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHhcCCCEEEEeCCC
Confidence 5655666788888654
No 479
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.94 E-value=0.068 Score=53.41 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=23.1
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHc
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
.+..-+.|.||+|+|||+|++++++..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 345568999999999999999999863
No 480
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.93 E-value=0.037 Score=59.99 Aligned_cols=37 Identities=30% Similarity=0.355 Sum_probs=28.6
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCc
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGA 238 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s 238 (704)
..|.-++|.||+|+||||++..+|..+ |..+..+++.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D 151 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGD 151 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 456788999999999999999998765 4455555543
No 481
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=95.91 E-value=0.032 Score=66.96 Aligned_cols=28 Identities=32% Similarity=0.356 Sum_probs=23.7
Q ss_pred CccCceEEEEcCCCChHHHHHHHHHHHc
Q 005285 201 VQFVRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
+++...+.+.||+|+|||||++.+++..
T Consensus 502 i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 529 (710)
T TIGR03796 502 LQPGQRVALVGGSGSGKSTIAKLVAGLY 529 (710)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445669999999999999999998854
No 482
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=95.91 E-value=0.021 Score=59.85 Aligned_cols=40 Identities=30% Similarity=0.471 Sum_probs=30.4
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc----CCCEEEEeCcc
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES----GLPFVFASGAE 239 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e~----g~~~v~is~s~ 239 (704)
|..+..-++|.|+||.|||+++..+|..+ +.+++++|...
T Consensus 15 G~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm 58 (259)
T PF03796_consen 15 GLRPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEM 58 (259)
T ss_dssp SB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS
T ss_pred CCCcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCC
Confidence 44555567889999999999999997643 68899988653
No 483
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.91 E-value=0.068 Score=54.97 Aligned_cols=105 Identities=16% Similarity=0.150 Sum_probs=57.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHH-H----cCCCE--------------EEEeCccccch----hhhhHHHHHHHHHHHhh
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAK-E----SGLPF--------------VFASGAEFTDS----EKSGAARINEMFSIARR 260 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~-e----~g~~~--------------v~is~s~~~~~----~~~g~~~vr~lF~~Ak~ 260 (704)
.+-++|.||.|+|||++.+.++. . .|.++ ..+...+-... +..-..++..+++.+.
T Consensus 31 g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~- 109 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSNCT- 109 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHHHHHHHHHHHhCC-
Confidence 45689999999999999999987 2 23321 11222221111 1112233555555543
Q ss_pred CCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCc
Q 005285 261 NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELD 327 (704)
Q Consensus 261 ~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD 327 (704)
.+++++|||+.+= ....+.......+++.+.... +..+|++|...+..+
T Consensus 110 -~~sLvllDE~~~g-----T~~~d~~~i~~~il~~l~~~~------------~~~~i~~TH~~~l~~ 158 (222)
T cd03287 110 -SRSLVILDELGRG-----TSTHDGIAIAYATLHYLLEEK------------KCLVLFVTHYPSLGE 158 (222)
T ss_pred -CCeEEEEccCCCC-----CChhhHHHHHHHHHHHHHhcc------------CCeEEEEcccHHHHH
Confidence 5789999998531 111122223345555554321 146777888876543
No 484
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.90 E-value=0.047 Score=57.91 Aligned_cols=38 Identities=29% Similarity=0.383 Sum_probs=29.4
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCcc
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAE 239 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~ 239 (704)
..|+-++|.||+|+|||+++..+|..+ |..+..+++..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~ 110 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT 110 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 457888999999999999999998755 55566665543
No 485
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=95.90 E-value=0.061 Score=55.82 Aligned_cols=104 Identities=19% Similarity=0.250 Sum_probs=58.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH-----cCCC--------------EEEEeCccccch----hhhhHHHHHHHHHHHhh
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKE-----SGLP--------------FVFASGAEFTDS----EKSGAARINEMFSIARR 260 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e-----~g~~--------------~v~is~s~~~~~----~~~g~~~vr~lF~~Ak~ 260 (704)
.+.++|+||...|||++.|++|-. +|.+ +..+...+-... +..-..++..+++.+..
T Consensus 43 ~~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~~~i~~~d~I~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~ 122 (235)
T PF00488_consen 43 SRIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAESAEIPIFDRIFTRIGDDDSIESGLSTFMAEMKRLSSILRNATE 122 (235)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSEEEEE--SEEEEEES---SSTTSSSHHHHHHHHHHHHHHH--T
T ss_pred eeEEEEeCCCccchhhHHHHHHHHhhhhhcCceeeecccccccccEEEeecccccccccccccHHHhHHHHHhhhhhccc
Confidence 467999999999999999999753 3422 112222221111 22233456677776653
Q ss_pred CCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCC
Q 005285 261 NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDEL 326 (704)
Q Consensus 261 ~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~L 326 (704)
.++|+|||+-. +....+.......+++.+.... +..+|++|+..+..
T Consensus 123 --~sLvliDE~g~-----gT~~~eg~ai~~aile~l~~~~------------~~~~i~~TH~~~l~ 169 (235)
T PF00488_consen 123 --KSLVLIDELGR-----GTNPEEGIAIAIAILEYLLEKS------------GCFVIIATHFHELA 169 (235)
T ss_dssp --TEEEEEESTTT-----TSSHHHHHHHHHHHHHHHHHTT------------T-EEEEEES-GGGG
T ss_pred --ceeeecccccC-----CCChhHHHHHHHHHHHHHHHhc------------cccEEEEeccchhH
Confidence 47999999842 1233444555566666665311 14778899887643
No 486
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.89 E-value=0.015 Score=57.53 Aligned_cols=26 Identities=27% Similarity=0.176 Sum_probs=22.4
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
....+.|.||+|+|||+|++.+++..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44568899999999999999999854
No 487
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.88 E-value=0.061 Score=55.29 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=20.7
Q ss_pred cCceEEEEcCCCChHHHHHHHHHH
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAK 226 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~ 226 (704)
...-+-+.||+|+|||||...++.
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 344588999999999999999976
No 488
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=95.87 E-value=0.14 Score=53.02 Aligned_cols=184 Identities=17% Similarity=0.150 Sum_probs=95.9
Q ss_pred CccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccc---cchhhh---hHHHHHHHHHHHhh------CCC-eEEE
Q 005285 201 VQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF---TDSEKS---GAARINEMFSIARR------NAP-AFVF 267 (704)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~---~~~~~~---g~~~vr~lF~~Ak~------~~P-~ILf 267 (704)
.+.|.-|||=|+||+|||++|.-+|.++|+.-+.- ...+ +..... ....-...|..-+. ..| +.=|
T Consensus 86 ~~~p~IILIGGasGVGkStIA~ElA~rLgI~~vis-TD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~piiaGF 164 (299)
T COG2074 86 MKRPLIILIGGASGVGKSTIAGELARRLGIRSVIS-TDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENPIIAGF 164 (299)
T ss_pred cCCCeEEEecCCCCCChhHHHHHHHHHcCCceeec-chHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcchhhhH
Confidence 35688899999999999999999999999975421 1111 111000 00011122322221 112 1123
Q ss_pred EccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCH
Q 005285 268 VDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDA 347 (704)
Q Consensus 268 IDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~ 347 (704)
.|....+.. ..+..+..-+.+ | .++++=+.-=-|..+++..+. --...+.+-.+|+
T Consensus 165 ~dqa~~V~~-------GI~~VI~RAi~e--G-------------~~lIIEGvHlVPg~i~~~~~~--~n~~~~~l~i~de 220 (299)
T COG2074 165 EDQASAVMV-------GIEAVIERAIEE--G-------------EDLIIEGVHLVPGLIKEEALG--NNVFMFMLYIADE 220 (299)
T ss_pred HHHhHHHHH-------HHHHHHHHHHhc--C-------------cceEEEeeeeccccccHhhhc--cceEEEEEEeCCH
Confidence 344433321 011222222221 1 113333333346777766652 2234566777777
Q ss_pred HHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Q 005285 348 KQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQL 416 (704)
Q Consensus 348 ~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al~~~~ 416 (704)
+.-+.-|-........... ....+.. -.++..+-......|...|-..|..+|+.+++++++
T Consensus 221 e~Hr~RF~~R~~~t~~~rp--~~Ryl~y-----f~EiR~I~Dyl~~~Are~gVPvI~n~di~etv~~il 282 (299)
T COG2074 221 ELHRERFYDRIRYTHASRP--GGRYLEY-----FKEIRTIHDYLVERAREHGVPVIENDDIDETVDRIL 282 (299)
T ss_pred HHHHHHHHHHHHHHhccCc--hhHHHHH-----HHHHHHHHHHHHHHHHhcCCCeeccccHHHHHHHHH
Confidence 7655554433322211111 1222222 235666666677777788889999999999999876
No 489
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.86 E-value=0.012 Score=59.45 Aligned_cols=39 Identities=23% Similarity=0.261 Sum_probs=30.5
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcC-CCEEEEeCcccc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESG-LPFVFASGAEFT 241 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g-~~~v~is~s~~~ 241 (704)
.|.-|.|.||+|+|||||+++|++.++ ..+..++..++.
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~ 44 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYY 44 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccc
Confidence 466789999999999999999999884 345556655543
No 490
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=95.84 E-value=0.049 Score=54.03 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=19.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHc
Q 005285 206 GVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
-..++||.|+|||.+..|+.--+
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~ 46 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVL 46 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 46799999999999999995433
No 491
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.83 E-value=0.015 Score=61.55 Aligned_cols=71 Identities=18% Similarity=0.285 Sum_probs=43.7
Q ss_pred cCce-EEEEcCCCChHHHHHHHHHHHcCC--CEEEEeCccccc-----------h--hhhhHHHHHHHHHHHhhCCCeEE
Q 005285 203 FVRG-VLLSGPPGTGKTLFARTLAKESGL--PFVFASGAEFTD-----------S--EKSGAARINEMFSIARRNAPAFV 266 (704)
Q Consensus 203 ~p~g-vLL~GPPGTGKT~LAraiA~e~g~--~~v~is~s~~~~-----------~--~~~g~~~vr~lF~~Ak~~~P~IL 266 (704)
.|+| ||+.||.|+|||+..-++-...|. +...++..+-.+ . .|.....+....+.|....|.||
T Consensus 123 ~~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVI 202 (353)
T COG2805 123 SPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVI 202 (353)
T ss_pred CCCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEE
Confidence 3556 466799999999999998877653 222223233222 2 12222224444556667789999
Q ss_pred EEccchh
Q 005285 267 FVDEIDA 273 (704)
Q Consensus 267 fIDEiDa 273 (704)
++=|+-.
T Consensus 203 lvGEmRD 209 (353)
T COG2805 203 LVGEMRD 209 (353)
T ss_pred EEecccc
Confidence 9999853
No 492
>PRK12338 hypothetical protein; Provisional
Probab=95.83 E-value=0.0087 Score=64.53 Aligned_cols=31 Identities=23% Similarity=0.340 Sum_probs=27.5
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCEE
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFV 233 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v 233 (704)
.|.-+++.|+||+|||++|+++|..+|...+
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~ 33 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKHL 33 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeEE
Confidence 4678999999999999999999999998653
No 493
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.82 E-value=0.071 Score=53.85 Aligned_cols=27 Identities=33% Similarity=0.495 Sum_probs=22.8
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHc
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
+...-+.|.||+|+|||+|++.+++..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345568899999999999999999853
No 494
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=95.80 E-value=0.018 Score=62.99 Aligned_cols=69 Identities=28% Similarity=0.376 Sum_probs=45.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCC--CEEEEeC-cccc-------ch-------hhhhHHHHHHHHHHHhhCCCeEE
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESGL--PFVFASG-AEFT-------DS-------EKSGAARINEMFSIARRNAPAFV 266 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g~--~~v~is~-s~~~-------~~-------~~~g~~~vr~lF~~Ak~~~P~IL 266 (704)
.+++++.|++|+|||++++++.+...- ..+.+.. .++. .. .+.+.-.+.+++..+....|..|
T Consensus 178 ~~~ili~G~tGsGKTTll~al~~~i~~~~riv~iEd~~El~~~~~~~~~l~~r~~~~~g~~~~t~~~ll~~aLR~~PD~I 257 (340)
T TIGR03819 178 RLAFLISGGTGSGKTTLLSALLALVAPDERIVLVEDAAELRPDHPHVVRLEARPANVEGAGAVTLTDLVRQALRMRPDRI 257 (340)
T ss_pred CCeEEEECCCCCCHHHHHHHHHccCCCCCcEEEECCcceecCCCCCeeeEEeccccccCcCccCHHHHHHHHhccCCCeE
Confidence 468999999999999999999876531 1221111 1111 00 01122346678888888999999
Q ss_pred EEccch
Q 005285 267 FVDEID 272 (704)
Q Consensus 267 fIDEiD 272 (704)
++.|+-
T Consensus 258 ivGEiR 263 (340)
T TIGR03819 258 VVGEVR 263 (340)
T ss_pred EEeCcC
Confidence 999984
No 495
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.78 E-value=0.024 Score=62.40 Aligned_cols=66 Identities=17% Similarity=0.186 Sum_probs=41.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcC------CCEEEEeCccccch----------------hhhhHHHHHHHHHHHhhCC
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKESG------LPFVFASGAEFTDS----------------EKSGAARINEMFSIARRNA 262 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e~g------~~~v~is~s~~~~~----------------~~~g~~~vr~lF~~Ak~~~ 262 (704)
..++++||+|+||||++++++++.. ..++.+ .+-.+. ..............+....
T Consensus 135 glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~--EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~~ 212 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTY--EAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRRK 212 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEe--CCCceEeccccccccceeeeeeccccccCHHHHHHHHhccC
Confidence 4588999999999999999998752 223221 211111 0000112344455566788
Q ss_pred CeEEEEccch
Q 005285 263 PAFVFVDEID 272 (704)
Q Consensus 263 P~ILfIDEiD 272 (704)
|.++++.|+-
T Consensus 213 Pd~i~vGEiR 222 (358)
T TIGR02524 213 PHAILVGEAR 222 (358)
T ss_pred CCEEeeeeeC
Confidence 9999999974
No 496
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=95.76 E-value=0.046 Score=65.45 Aligned_cols=28 Identities=29% Similarity=0.380 Sum_probs=24.0
Q ss_pred CccCceEEEEcCCCChHHHHHHHHHHHc
Q 005285 201 VQFVRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
+++...+.+.||+|+|||||++.+++..
T Consensus 476 i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 503 (686)
T TIGR03797 476 IEPGEFVAIVGPSGSGKSTLLRLLLGFE 503 (686)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4456679999999999999999998854
No 497
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.73 E-value=0.013 Score=57.36 Aligned_cols=36 Identities=36% Similarity=0.492 Sum_probs=28.4
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGA 238 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s 238 (704)
.+..+.|.|+||+|||++|+++++.+ |..+..+++.
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D 41 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGD 41 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCc
Confidence 35578899999999999999999876 4456666554
No 498
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.73 E-value=0.053 Score=54.49 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=23.0
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHH
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e 227 (704)
.+...+.|.||+|+|||+|.+.+++.
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 24 KKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34567899999999999999999986
No 499
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.71 E-value=0.01 Score=59.01 Aligned_cols=29 Identities=24% Similarity=0.476 Sum_probs=24.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCCCEE
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKESGLPFV 233 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e~g~~~v 233 (704)
..+.|.||+|+||||+++.+++..+.+++
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~ 31 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLL 31 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEE
Confidence 45889999999999999999998776543
No 500
>PRK14529 adenylate kinase; Provisional
Probab=95.71 E-value=0.0079 Score=61.86 Aligned_cols=34 Identities=24% Similarity=0.428 Sum_probs=28.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCcccc
Q 005285 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~ 241 (704)
.|+|.||||+|||++++.+|..++.+.+ +..++.
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~i--s~gdll 35 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHI--ESGAIF 35 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCc--ccchhh
Confidence 3889999999999999999999998765 434443
Done!