Query 005285
Match_columns 704
No_of_seqs 605 out of 4029
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 20:56:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005285.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005285hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ce7_A Cell division protein F 100.0 3.9E-83 1.3E-87 717.5 47.4 443 165-642 10-458 (476)
2 2dhr_A FTSH; AAA+ protein, hex 100.0 4.6E-81 1.6E-85 704.4 44.2 458 145-646 9-472 (499)
3 4b4t_J 26S protease regulatory 100.0 2.2E-51 7.6E-56 448.1 26.4 246 163-417 140-391 (405)
4 4b4t_I 26S protease regulatory 100.0 3.5E-50 1.2E-54 439.8 28.4 246 163-417 174-425 (437)
5 4b4t_H 26S protease regulatory 100.0 1.9E-49 6.5E-54 437.8 26.3 246 163-417 201-452 (467)
6 4b4t_L 26S protease subunit RP 100.0 3.7E-49 1.3E-53 436.6 27.4 245 163-416 173-423 (437)
7 4b4t_M 26S protease regulatory 100.0 4E-49 1.4E-53 436.0 25.5 245 163-416 173-423 (434)
8 4b4t_K 26S protease regulatory 100.0 2.3E-48 7.7E-53 429.6 27.5 245 163-416 164-415 (428)
9 2di4_A Zinc protease, cell div 100.0 3.7E-48 1.3E-52 394.4 18.6 207 431-655 6-213 (238)
10 3cf2_A TER ATPase, transitiona 100.0 2.1E-43 7.1E-48 415.4 6.0 227 163-398 469-701 (806)
11 3cf2_A TER ATPase, transitiona 100.0 3.7E-41 1.3E-45 396.2 23.0 243 164-415 197-459 (806)
12 1lv7_A FTSH; alpha/beta domain 100.0 8.5E-37 2.9E-41 315.6 27.8 244 164-416 5-253 (257)
13 2x8a_A Nuclear valosin-contain 100.0 4.7E-37 1.6E-41 322.2 21.6 243 164-415 3-264 (274)
14 3cf0_A Transitional endoplasmi 100.0 2.4E-36 8.1E-41 320.6 21.1 242 164-414 8-280 (301)
15 2qz4_A Paraplegin; AAA+, SPG7, 100.0 6.7E-36 2.3E-40 308.1 21.3 243 166-417 1-251 (262)
16 3h4m_A Proteasome-activating n 100.0 1E-34 3.5E-39 303.8 27.9 244 164-416 10-259 (285)
17 1ixz_A ATP-dependent metallopr 100.0 1.1E-34 3.9E-39 299.1 26.5 240 164-412 9-253 (254)
18 1xwi_A SKD1 protein; VPS4B, AA 100.0 9.5E-35 3.3E-39 311.4 25.8 224 164-398 5-233 (322)
19 3eie_A Vacuolar protein sortin 100.0 9.5E-35 3.3E-39 311.0 19.7 226 163-399 10-239 (322)
20 3hu3_A Transitional endoplasmi 100.0 6.3E-34 2.1E-38 320.9 25.9 227 166-401 199-428 (489)
21 1iy2_A ATP-dependent metallopr 100.0 1.3E-33 4.5E-38 295.6 26.5 254 146-412 19-277 (278)
22 2qp9_X Vacuolar protein sortin 100.0 2E-33 6.7E-38 305.2 23.5 224 164-398 44-271 (355)
23 2r62_A Cell division protease 100.0 9.9E-36 3.4E-40 309.0 3.6 244 164-415 4-253 (268)
24 2zan_A Vacuolar protein sortin 100.0 3.4E-32 1.2E-36 303.9 20.8 224 164-398 127-355 (444)
25 3d8b_A Fidgetin-like protein 1 100.0 2.2E-30 7.5E-35 281.3 24.4 243 164-416 77-335 (357)
26 3b9p_A CG5977-PA, isoform A; A 100.0 2.3E-30 7.8E-35 272.6 20.9 242 164-414 14-271 (297)
27 1ypw_A Transitional endoplasmi 100.0 1.4E-32 4.8E-37 327.4 -1.7 228 163-399 469-702 (806)
28 3vfd_A Spastin; ATPase, microt 100.0 2.7E-29 9.2E-34 275.6 21.3 242 164-415 108-365 (389)
29 3t15_A Ribulose bisphosphate c 100.0 1.6E-30 5.3E-35 275.1 9.2 182 200-387 32-223 (293)
30 1ypw_A Transitional endoplasmi 99.9 3.9E-27 1.3E-31 280.5 23.7 229 164-401 197-428 (806)
31 2c9o_A RUVB-like 1; hexameric 99.9 1.3E-25 4.5E-30 251.4 1.6 203 164-390 30-262 (456)
32 3uk6_A RUVB-like 2; hexameric 99.9 3.9E-22 1.3E-26 215.6 18.5 219 165-414 38-329 (368)
33 3syl_A Protein CBBX; photosynt 99.9 1.3E-21 4.5E-26 206.4 16.4 224 169-409 28-280 (309)
34 3pfi_A Holliday junction ATP-d 99.9 2.3E-20 7.9E-25 199.7 21.8 224 164-414 22-253 (338)
35 1d2n_A N-ethylmaleimide-sensit 99.8 1.3E-19 4.4E-24 188.4 18.2 203 170-392 32-246 (272)
36 1hqc_A RUVB; extended AAA-ATPa 99.8 3.4E-19 1.2E-23 189.0 19.0 224 165-414 6-237 (324)
37 1ofh_A ATP-dependent HSL prote 99.8 2.1E-19 7.2E-24 188.8 15.7 241 171-414 15-298 (310)
38 1g41_A Heat shock protein HSLU 99.8 6.6E-20 2.3E-24 203.1 4.8 169 171-356 15-190 (444)
39 3m6a_A ATP-dependent protease 99.8 4.1E-19 1.4E-23 202.9 11.0 232 167-414 77-340 (543)
40 2v1u_A Cell division control p 99.8 1.5E-17 5E-22 179.6 20.3 222 168-415 16-276 (387)
41 2r44_A Uncharacterized protein 99.8 3.5E-18 1.2E-22 182.5 14.3 221 168-417 24-299 (331)
42 2chg_A Replication factor C sm 99.8 2.7E-17 9.3E-22 162.5 18.6 206 165-413 11-224 (226)
43 3hws_A ATP-dependent CLP prote 99.7 7.6E-18 2.6E-22 182.6 15.5 225 173-399 17-326 (363)
44 3u61_B DNA polymerase accessor 99.7 5.1E-18 1.8E-22 180.5 13.6 205 163-414 18-236 (324)
45 3pvs_A Replication-associated 99.7 1.1E-17 3.6E-22 186.8 16.6 206 164-414 19-243 (447)
46 3bos_A Putative DNA replicatio 99.7 2.4E-17 8.2E-22 165.9 16.9 209 166-413 23-241 (242)
47 2z4s_A Chromosomal replication 99.7 1.8E-17 6.2E-22 184.7 17.4 220 165-414 99-331 (440)
48 1g8p_A Magnesium-chelatase 38 99.7 2.2E-17 7.4E-22 176.8 17.2 227 164-417 17-324 (350)
49 1l8q_A Chromosomal replication 99.7 2.5E-17 8.7E-22 175.4 16.8 199 165-394 5-214 (324)
50 1njg_A DNA polymerase III subu 99.7 1.6E-16 5.4E-21 158.7 19.9 204 164-412 16-248 (250)
51 4fcw_A Chaperone protein CLPB; 99.7 3.3E-17 1.1E-21 172.6 14.3 210 171-395 17-278 (311)
52 2qby_B CDC6 homolog 3, cell di 99.7 6E-17 2E-21 175.4 16.3 212 169-415 18-270 (384)
53 1sxj_A Activator 1 95 kDa subu 99.7 6.9E-17 2.4E-21 183.5 13.9 222 164-414 32-273 (516)
54 1in4_A RUVB, holliday junction 99.7 9.8E-16 3.3E-20 164.5 22.1 223 166-415 20-250 (334)
55 2qby_A CDC6 homolog 1, cell di 99.7 5E-16 1.7E-20 167.3 19.7 222 167-416 16-273 (386)
56 1sxj_D Activator 1 41 kDa subu 99.7 2.6E-16 8.7E-21 168.5 16.7 211 164-413 30-261 (353)
57 1jbk_A CLPB protein; beta barr 99.7 4.2E-17 1.4E-21 157.4 8.6 157 167-354 18-194 (195)
58 1fnn_A CDC6P, cell division co 99.7 9.2E-16 3.2E-20 165.9 20.1 221 168-415 14-274 (389)
59 1r6b_X CLPA protein; AAA+, N-t 99.7 7.1E-16 2.4E-20 182.8 20.5 220 166-415 181-433 (758)
60 1um8_A ATP-dependent CLP prote 99.7 4.2E-16 1.4E-20 169.6 15.9 236 172-410 22-360 (376)
61 3pxi_A Negative regulator of g 99.6 5.5E-16 1.9E-20 183.9 14.9 171 170-359 490-676 (758)
62 3pxg_A Negative regulator of g 99.6 4.8E-16 1.6E-20 174.5 13.3 207 165-415 174-406 (468)
63 1r6b_X CLPA protein; AAA+, N-t 99.6 8.1E-16 2.8E-20 182.3 15.5 170 171-359 458-667 (758)
64 2chq_A Replication factor C sm 99.6 6.1E-16 2.1E-20 162.8 12.9 207 163-412 9-223 (319)
65 3te6_A Regulatory protein SIR3 99.6 5.5E-16 1.9E-20 165.1 11.2 137 202-360 43-213 (318)
66 1jr3_A DNA polymerase III subu 99.6 6.3E-15 2.2E-19 158.8 18.6 204 164-412 9-241 (373)
67 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 7.7E-16 2.6E-20 173.6 11.8 210 172-409 23-280 (500)
68 1iqp_A RFCS; clamp loader, ext 99.6 7.9E-15 2.7E-19 154.8 18.4 202 164-412 18-231 (327)
69 1sxj_B Activator 1 37 kDa subu 99.6 4.7E-15 1.6E-19 156.3 16.5 203 164-413 14-229 (323)
70 1qvr_A CLPB protein; coiled co 99.6 1.6E-15 5.3E-20 182.2 13.7 202 166-398 165-395 (854)
71 2p65_A Hypothetical protein PF 99.6 7.9E-16 2.7E-20 148.3 8.9 151 167-346 18-187 (187)
72 3pxi_A Negative regulator of g 99.6 2.4E-15 8.3E-20 178.3 13.5 190 165-399 174-389 (758)
73 2bjv_A PSP operon transcriptio 99.6 5.1E-15 1.7E-19 153.0 14.0 212 168-408 3-250 (265)
74 3f9v_A Minichromosome maintena 99.6 3.2E-16 1.1E-20 180.8 3.3 195 205-415 328-587 (595)
75 1qvr_A CLPB protein; coiled co 99.6 1.2E-14 3.9E-19 174.7 14.6 211 170-395 557-819 (854)
76 1sxj_C Activator 1 40 kDa subu 99.5 3.7E-14 1.3E-18 152.1 15.2 206 164-412 18-236 (340)
77 1ojl_A Transcriptional regulat 99.5 3E-14 1E-18 151.0 11.5 207 172-408 3-245 (304)
78 1sxj_E Activator 1 40 kDa subu 99.5 7.8E-14 2.7E-18 149.6 13.7 193 163-394 6-243 (354)
79 1w5s_A Origin recognition comp 99.4 5.4E-12 1.8E-16 137.5 21.2 226 169-414 20-292 (412)
80 3k1j_A LON protease, ATP-depen 99.4 1.4E-12 4.7E-17 150.8 14.2 224 164-414 34-374 (604)
81 1a5t_A Delta prime, HOLB; zinc 99.4 7.4E-12 2.5E-16 134.2 18.1 158 202-390 22-207 (334)
82 3co5_A Putative two-component 99.4 1.1E-13 3.9E-18 130.1 2.9 112 172-323 5-116 (143)
83 3n70_A Transport activator; si 99.4 1.1E-12 3.7E-17 123.5 9.6 112 172-323 2-116 (145)
84 3kw6_A 26S protease regulatory 99.4 2.3E-12 8E-17 108.8 9.5 74 343-416 1-74 (78)
85 2krk_A 26S protease regulatory 99.3 4.4E-12 1.5E-16 109.3 8.9 76 341-416 7-82 (86)
86 3cmw_A Protein RECA, recombina 99.3 8E-12 2.7E-16 156.6 10.5 150 164-323 1013-1218(1706)
87 2gno_A DNA polymerase III, gam 99.2 4.7E-11 1.6E-15 126.6 13.6 125 204-358 18-152 (305)
88 4akg_A Glutathione S-transfera 99.2 4.5E-11 1.6E-15 155.8 14.9 146 203-359 1266-1432(2695)
89 3vlf_B 26S protease regulatory 99.2 3.1E-11 1.1E-15 104.4 8.3 71 346-416 2-72 (88)
90 3ec2_A DNA replication protein 99.2 4.4E-11 1.5E-15 116.1 8.6 133 166-324 5-144 (180)
91 3aji_B S6C, proteasome (prosom 99.1 1.8E-10 6E-15 98.3 8.2 71 346-416 2-72 (83)
92 2w58_A DNAI, primosome compone 99.0 4.6E-10 1.6E-14 110.7 7.2 102 166-274 20-127 (202)
93 2dzn_B 26S protease regulatory 99.0 1.9E-10 6.6E-15 98.0 3.1 69 348-416 1-69 (82)
94 1ny5_A Transcriptional regulat 98.9 2.7E-09 9.2E-14 116.7 11.7 214 170-412 136-384 (387)
95 3f8t_A Predicted ATPase involv 98.9 1.9E-09 6.7E-14 119.1 10.5 216 173-415 215-483 (506)
96 2fna_A Conserved hypothetical 98.9 1.5E-07 5.1E-12 99.7 21.3 185 168-390 10-252 (357)
97 2kjq_A DNAA-related protein; s 98.9 1.1E-08 3.8E-13 96.8 11.2 59 203-275 35-96 (149)
98 2qen_A Walker-type ATPase; unk 98.8 2.4E-07 8.3E-12 97.9 21.9 189 167-389 8-247 (350)
99 2vhj_A Ntpase P4, P4; non- hyd 98.8 2.7E-09 9.3E-14 113.1 4.9 119 200-330 119-242 (331)
100 2qgz_A Helicase loader, putati 98.8 7.5E-09 2.6E-13 109.7 7.5 100 167-274 120-226 (308)
101 3dzd_A Transcriptional regulat 98.8 2.7E-08 9.4E-13 108.0 12.1 198 171-395 129-361 (368)
102 1svm_A Large T antigen; AAA+ f 98.7 1.3E-08 4.3E-13 110.9 7.2 120 199-344 164-284 (377)
103 4akg_A Glutathione S-transfera 98.7 1.4E-07 4.8E-12 123.4 17.3 191 204-414 645-856 (2695)
104 2r2a_A Uncharacterized protein 98.6 3.6E-08 1.2E-12 98.0 7.2 131 203-350 4-158 (199)
105 3cmu_A Protein RECA, recombina 98.4 2.7E-07 9.1E-12 117.4 8.7 105 200-304 1423-1554(2050)
106 1tue_A Replication protein E1; 98.4 3.2E-07 1.1E-11 91.2 6.3 32 201-232 55-86 (212)
107 1jr3_D DNA polymerase III, del 98.3 4.2E-06 1.4E-10 89.3 12.6 176 203-414 17-208 (343)
108 3vkg_A Dynein heavy chain, cyt 98.2 2.4E-06 8.2E-11 112.7 11.9 144 204-358 1304-1469(3245)
109 1u0j_A DNA replication protein 98.1 8.9E-06 3E-10 84.1 9.7 28 203-230 103-130 (267)
110 2c9o_A RUVB-like 1; hexameric 98.1 8.7E-06 3E-10 90.7 10.3 126 263-414 296-436 (456)
111 3vkg_A Dynein heavy chain, cyt 98.0 1.2E-05 4.2E-10 106.2 12.3 174 204-394 604-799 (3245)
112 1ye8_A Protein THEP1, hypothet 97.9 4.4E-05 1.5E-09 74.2 11.2 28 206-233 2-29 (178)
113 1n0w_A DNA repair protein RAD5 97.9 4.8E-05 1.6E-09 76.1 10.8 77 200-276 20-133 (243)
114 2cvh_A DNA repair and recombin 97.8 2.7E-05 9.2E-10 76.8 7.4 40 200-239 16-55 (220)
115 1xp8_A RECA protein, recombina 97.8 6.3E-05 2.2E-09 81.4 10.9 77 200-276 70-166 (366)
116 2zr9_A Protein RECA, recombina 97.8 4.7E-05 1.6E-09 81.9 8.7 77 200-276 57-153 (349)
117 2w0m_A SSO2452; RECA, SSPF, un 97.8 0.00015 5.3E-09 71.6 11.8 40 200-239 19-61 (235)
118 2ehv_A Hypothetical protein PH 97.7 0.00018 6.1E-09 72.2 12.0 129 200-344 26-207 (251)
119 2z43_A DNA repair and recombin 97.7 6E-05 2E-09 80.0 8.9 100 200-299 103-243 (324)
120 3hr8_A Protein RECA; alpha and 97.7 0.00014 4.6E-09 78.5 11.1 77 200-276 57-153 (356)
121 1z6t_A APAF-1, apoptotic prote 97.6 0.0011 3.8E-08 75.5 18.1 172 169-387 122-327 (591)
122 4a74_A DNA repair and recombin 97.6 0.00023 7.9E-09 70.4 10.9 40 200-239 21-69 (231)
123 1u94_A RECA protein, recombina 97.6 0.0001 3.4E-09 79.6 8.5 77 200-276 59-155 (356)
124 3cmu_A Protein RECA, recombina 97.6 8.3E-05 2.8E-09 94.9 8.3 77 200-276 1077-1173(2050)
125 1v5w_A DMC1, meiotic recombina 97.5 0.00019 6.4E-09 76.9 9.4 99 200-298 118-258 (343)
126 2dr3_A UPF0273 protein PH0284; 97.5 0.00049 1.7E-08 68.7 11.4 40 200-239 19-61 (247)
127 2zts_A Putative uncharacterize 97.5 0.00055 1.9E-08 68.4 11.1 40 200-239 26-69 (251)
128 1qhx_A CPT, protein (chloramph 97.4 8.7E-05 3E-09 70.8 4.4 37 204-240 3-39 (178)
129 3io5_A Recombination and repai 97.4 0.0003 1E-08 74.4 8.7 72 206-277 30-126 (333)
130 1g41_A Heat shock protein HSLU 97.4 0.0012 4.1E-08 73.1 13.5 100 251-355 241-346 (444)
131 2r8r_A Sensor protein; KDPD, P 97.4 0.0026 8.9E-08 64.1 14.8 34 205-238 7-43 (228)
132 2orw_A Thymidine kinase; TMTK, 97.3 9.8E-05 3.3E-09 72.0 3.8 69 205-274 4-88 (184)
133 2i1q_A DNA repair and recombin 97.3 0.00026 8.8E-09 74.8 7.3 100 200-299 94-244 (322)
134 3sfz_A APAF-1, apoptotic pepti 97.3 0.0024 8.4E-08 78.5 17.0 173 169-386 122-326 (1249)
135 1pzn_A RAD51, DNA repair and r 97.3 0.00053 1.8E-08 73.6 9.7 40 200-239 127-175 (349)
136 3lda_A DNA repair protein RAD5 97.3 0.0006 2E-08 74.6 10.0 77 200-276 174-287 (400)
137 3upu_A ATP-dependent DNA helic 97.3 0.00036 1.2E-08 77.6 8.4 63 163-237 16-82 (459)
138 3cmw_A Protein RECA, recombina 97.3 0.00039 1.3E-08 87.9 9.2 77 200-276 728-824 (1706)
139 3trf_A Shikimate kinase, SK; a 97.3 0.00018 6.2E-09 69.1 4.8 32 204-235 5-36 (185)
140 1nlf_A Regulatory protein REPA 97.3 0.00078 2.7E-08 69.5 9.6 40 201-240 27-79 (279)
141 2rhm_A Putative kinase; P-loop 97.2 0.00022 7.5E-09 68.7 5.1 34 201-234 2-35 (193)
142 2p5t_B PEZT; postsegregational 97.2 0.00053 1.8E-08 69.9 8.1 58 179-240 11-68 (253)
143 3vaa_A Shikimate kinase, SK; s 97.1 0.0003 1E-08 68.9 4.8 33 203-235 24-56 (199)
144 2r6a_A DNAB helicase, replicat 97.1 0.001 3.5E-08 73.8 9.0 40 200-239 199-242 (454)
145 1gvn_B Zeta; postsegregational 97.1 0.00033 1.1E-08 73.1 4.5 41 201-241 30-70 (287)
146 2a5y_B CED-4; apoptosis; HET: 97.1 0.0083 2.9E-07 68.0 16.4 164 174-379 131-329 (549)
147 1zp6_A Hypothetical protein AT 97.0 0.00034 1.2E-08 67.4 4.0 40 201-240 6-45 (191)
148 2iyv_A Shikimate kinase, SK; t 97.0 0.00045 1.5E-08 66.3 4.4 30 205-234 3-32 (184)
149 3kb2_A SPBC2 prophage-derived 97.0 0.00046 1.6E-08 65.0 4.3 31 206-236 3-33 (173)
150 1via_A Shikimate kinase; struc 97.0 0.00045 1.5E-08 65.9 4.0 29 206-234 6-34 (175)
151 1kag_A SKI, shikimate kinase I 97.0 0.00046 1.6E-08 65.3 4.0 30 204-233 4-33 (173)
152 3iij_A Coilin-interacting nucl 96.9 0.00053 1.8E-08 65.6 4.4 33 203-235 10-42 (180)
153 2b8t_A Thymidine kinase; deoxy 96.9 0.0015 5.2E-08 65.7 7.9 69 206-274 14-101 (223)
154 2cdn_A Adenylate kinase; phosp 96.9 0.00072 2.5E-08 66.0 5.2 34 202-235 18-51 (201)
155 2iut_A DNA translocase FTSK; n 96.9 0.0076 2.6E-07 68.5 14.1 74 264-355 345-420 (574)
156 1y63_A LMAJ004144AAA protein; 96.9 0.00042 1.4E-08 66.9 3.4 32 203-234 9-41 (184)
157 1tev_A UMP-CMP kinase; ploop, 96.9 0.0006 2.1E-08 65.5 4.3 31 204-234 3-33 (196)
158 2q6t_A DNAB replication FORK h 96.9 0.0023 7.7E-08 70.9 9.3 40 200-239 196-239 (444)
159 1ly1_A Polynucleotide kinase; 96.9 0.00048 1.6E-08 65.4 3.3 30 204-233 2-32 (181)
160 1qf9_A UMP/CMP kinase, protein 96.9 0.00074 2.5E-08 64.7 4.7 33 203-235 5-37 (194)
161 1zuh_A Shikimate kinase; alpha 96.9 0.00072 2.5E-08 63.9 4.6 30 205-234 8-37 (168)
162 3a4m_A L-seryl-tRNA(SEC) kinas 96.8 0.0019 6.6E-08 66.0 7.9 38 204-241 4-44 (260)
163 3t61_A Gluconokinase; PSI-biol 96.8 0.00083 2.8E-08 65.6 4.7 31 204-234 18-48 (202)
164 2ze6_A Isopentenyl transferase 96.8 0.00069 2.3E-08 69.3 4.1 32 206-237 3-34 (253)
165 3bh0_A DNAB-like replicative h 96.8 0.0032 1.1E-07 66.4 9.4 40 200-239 64-106 (315)
166 1cr0_A DNA primase/helicase; R 96.8 0.004 1.4E-07 64.6 10.0 39 200-238 31-73 (296)
167 3be4_A Adenylate kinase; malar 96.8 0.00077 2.6E-08 66.9 4.4 32 204-235 5-36 (217)
168 3umf_A Adenylate kinase; rossm 96.8 0.00071 2.4E-08 67.8 4.1 39 201-241 26-64 (217)
169 2vli_A Antibiotic resistance p 96.8 0.00062 2.1E-08 65.0 3.5 30 204-233 5-34 (183)
170 1aky_A Adenylate kinase; ATP:A 96.8 0.00083 2.8E-08 66.6 4.5 32 203-234 3-34 (220)
171 2c95_A Adenylate kinase 1; tra 96.8 0.00087 3E-08 64.6 4.5 33 203-235 8-40 (196)
172 1zd8_A GTP:AMP phosphotransfer 96.8 0.00083 2.9E-08 67.0 4.3 34 202-235 5-38 (227)
173 3cm0_A Adenylate kinase; ATP-b 96.8 0.00074 2.5E-08 64.7 3.7 30 204-233 4-33 (186)
174 2fz4_A DNA repair protein RAD2 96.7 0.0024 8.3E-08 64.4 7.5 33 206-238 110-142 (237)
175 3lw7_A Adenylate kinase relate 96.7 0.00087 3E-08 62.8 3.9 29 206-235 3-31 (179)
176 2ius_A DNA translocase FTSK; n 96.7 0.0085 2.9E-07 67.4 12.6 75 263-355 297-374 (512)
177 1e6c_A Shikimate kinase; phosp 96.7 0.00095 3.3E-08 63.0 4.2 30 205-234 3-32 (173)
178 2bwj_A Adenylate kinase 5; pho 96.7 0.00083 2.8E-08 64.9 3.8 32 203-234 11-42 (199)
179 2pez_A Bifunctional 3'-phospho 96.7 0.0015 5.2E-08 62.4 5.2 36 203-238 4-42 (179)
180 3dl0_A Adenylate kinase; phosp 96.7 0.0011 3.9E-08 65.2 4.4 30 206-235 2-31 (216)
181 1kht_A Adenylate kinase; phosp 96.7 0.00094 3.2E-08 64.0 3.7 26 204-229 3-28 (192)
182 3tlx_A Adenylate kinase 2; str 96.6 0.0012 4.1E-08 66.9 4.5 33 203-235 28-60 (243)
183 1ukz_A Uridylate kinase; trans 96.6 0.0013 4.4E-08 64.1 4.5 33 203-235 14-46 (203)
184 1ak2_A Adenylate kinase isoenz 96.6 0.0013 4.4E-08 66.0 4.6 31 204-234 16-46 (233)
185 3fb4_A Adenylate kinase; psych 96.6 0.0013 4.3E-08 64.8 4.4 30 206-235 2-31 (216)
186 1knq_A Gluconate kinase; ALFA/ 96.6 0.0014 4.9E-08 62.2 4.5 30 204-233 8-37 (175)
187 2pt5_A Shikimate kinase, SK; a 96.6 0.0014 4.8E-08 61.6 4.3 29 206-234 2-30 (168)
188 1zak_A Adenylate kinase; ATP:A 96.6 0.001 3.5E-08 66.0 3.4 31 203-233 4-34 (222)
189 4eun_A Thermoresistant glucoki 96.6 0.0015 5.1E-08 63.8 4.5 36 203-240 28-63 (200)
190 2i3b_A HCR-ntpase, human cance 96.5 0.00076 2.6E-08 66.1 2.2 23 206-228 3-25 (189)
191 3dm5_A SRP54, signal recogniti 96.5 0.022 7.6E-07 62.8 14.1 70 203-272 99-192 (443)
192 3crm_A TRNA delta(2)-isopenten 96.5 0.0016 5.5E-08 69.1 4.3 38 203-240 4-41 (323)
193 1g5t_A COB(I)alamin adenosyltr 96.5 0.012 4.2E-07 57.8 10.2 100 206-323 30-163 (196)
194 3sr0_A Adenylate kinase; phosp 96.4 0.0017 5.8E-08 64.4 4.0 34 206-241 2-35 (206)
195 1tf7_A KAIC; homohexamer, hexa 96.4 0.021 7.1E-07 64.5 13.0 96 200-297 277-404 (525)
196 1e4v_A Adenylate kinase; trans 96.4 0.0021 7.3E-08 63.3 4.3 30 206-235 2-31 (214)
197 2pbr_A DTMP kinase, thymidylat 96.4 0.0026 9E-08 60.9 4.8 31 206-236 2-35 (195)
198 1vma_A Cell division protein F 96.4 0.012 4.1E-07 61.9 10.1 72 201-272 101-196 (306)
199 3jvv_A Twitching mobility prot 96.3 0.0043 1.5E-07 66.8 6.7 67 206-272 125-206 (356)
200 1cke_A CK, MSSA, protein (cyti 96.3 0.0024 8.2E-08 63.1 4.4 30 204-233 5-34 (227)
201 3e1s_A Exodeoxyribonuclease V, 96.3 0.0023 7.9E-08 73.2 4.8 33 205-237 205-240 (574)
202 2v54_A DTMP kinase, thymidylat 96.3 0.0026 9E-08 61.6 4.4 33 204-236 4-37 (204)
203 2eyu_A Twitching motility prot 96.3 0.0032 1.1E-07 64.7 5.2 69 203-272 24-108 (261)
204 3bgw_A DNAB-like replicative h 96.3 0.0086 2.9E-07 66.3 9.0 40 200-239 193-235 (444)
205 4gp7_A Metallophosphoesterase; 96.3 0.0078 2.7E-07 57.4 7.5 21 203-223 8-28 (171)
206 3uie_A Adenylyl-sulfate kinase 96.3 0.0028 9.6E-08 61.8 4.5 37 203-239 24-63 (200)
207 2ewv_A Twitching motility prot 96.3 0.0059 2E-07 66.1 7.4 72 201-272 133-219 (372)
208 1q57_A DNA primase/helicase; d 96.3 0.0088 3E-07 67.1 9.1 40 200-239 238-281 (503)
209 3kl4_A SRP54, signal recogniti 96.3 0.028 9.6E-07 61.9 12.9 70 203-272 96-189 (433)
210 2jaq_A Deoxyguanosine kinase; 96.2 0.0025 8.7E-08 61.5 3.7 29 206-234 2-30 (205)
211 1nks_A Adenylate kinase; therm 96.2 0.0017 5.7E-08 62.2 2.4 31 206-236 3-36 (194)
212 2xb4_A Adenylate kinase; ATP-b 96.2 0.0027 9.3E-08 63.2 4.0 29 206-234 2-30 (223)
213 1tf7_A KAIC; homohexamer, hexa 96.2 0.011 3.7E-07 66.8 9.4 112 201-326 36-188 (525)
214 2if2_A Dephospho-COA kinase; a 96.2 0.0028 9.5E-08 61.7 3.9 29 206-235 3-31 (204)
215 3ake_A Cytidylate kinase; CMP 96.2 0.0039 1.3E-07 60.6 4.9 30 206-235 4-33 (208)
216 2z0h_A DTMP kinase, thymidylat 96.2 0.0039 1.3E-07 60.0 4.7 30 207-236 3-35 (197)
217 1uj2_A Uridine-cytidine kinase 96.1 0.004 1.4E-07 63.2 5.0 40 203-242 21-68 (252)
218 2wwf_A Thymidilate kinase, put 96.1 0.0024 8.2E-08 62.3 3.2 30 203-232 9-38 (212)
219 1uf9_A TT1252 protein; P-loop, 96.1 0.004 1.4E-07 60.2 4.6 31 203-234 7-37 (203)
220 2bbw_A Adenylate kinase 4, AK4 96.1 0.0035 1.2E-07 63.2 4.3 30 204-233 27-56 (246)
221 1nn5_A Similar to deoxythymidy 96.1 0.0025 8.7E-08 62.2 3.1 27 203-229 8-34 (215)
222 1jjv_A Dephospho-COA kinase; P 96.1 0.0034 1.1E-07 61.3 3.9 29 205-234 3-31 (206)
223 3r20_A Cytidylate kinase; stru 96.1 0.0039 1.3E-07 63.1 4.4 31 203-233 8-38 (233)
224 2plr_A DTMP kinase, probable t 96.0 0.0055 1.9E-07 59.5 5.2 32 204-235 4-37 (213)
225 3nwj_A ATSK2; P loop, shikimat 95.9 0.0039 1.3E-07 63.7 3.6 31 204-234 48-78 (250)
226 2pt7_A CAG-ALFA; ATPase, prote 95.9 0.0037 1.3E-07 66.5 3.4 71 203-273 170-251 (330)
227 3foz_A TRNA delta(2)-isopenten 95.8 0.0048 1.6E-07 65.0 3.9 40 203-242 9-48 (316)
228 4a1f_A DNAB helicase, replicat 95.8 0.037 1.3E-06 59.0 10.5 40 200-239 42-84 (338)
229 3a8t_A Adenylate isopentenyltr 95.8 0.0044 1.5E-07 66.1 3.3 38 203-240 39-76 (339)
230 1ltq_A Polynucleotide kinase; 95.7 0.005 1.7E-07 63.8 3.7 30 204-233 2-32 (301)
231 2grj_A Dephospho-COA kinase; T 95.7 0.0063 2.1E-07 59.6 4.0 30 205-234 13-42 (192)
232 1vht_A Dephospho-COA kinase; s 95.7 0.0068 2.3E-07 59.7 4.2 31 204-235 4-34 (218)
233 2h92_A Cytidylate kinase; ross 95.7 0.0069 2.4E-07 59.6 4.2 31 204-234 3-33 (219)
234 2yvu_A Probable adenylyl-sulfa 95.7 0.008 2.7E-07 57.7 4.5 35 203-237 12-49 (186)
235 1q3t_A Cytidylate kinase; nucl 95.6 0.008 2.7E-07 60.2 4.6 33 202-234 14-46 (236)
236 3c8u_A Fructokinase; YP_612366 95.6 0.0077 2.6E-07 59.1 4.4 42 181-229 6-47 (208)
237 2qt1_A Nicotinamide riboside k 95.6 0.0057 1.9E-07 59.8 3.3 31 203-233 20-51 (207)
238 2px0_A Flagellar biosynthesis 95.6 0.045 1.5E-06 57.2 10.3 37 203-239 104-144 (296)
239 1m7g_A Adenylylsulfate kinase; 95.6 0.0063 2.1E-07 59.9 3.5 38 203-240 24-65 (211)
240 1rz3_A Hypothetical protein rb 95.6 0.022 7.5E-07 55.6 7.4 39 202-240 20-61 (201)
241 4e22_A Cytidylate kinase; P-lo 95.5 0.0088 3E-07 60.8 4.4 30 204-233 27-56 (252)
242 3gfo_A Cobalt import ATP-bindi 95.5 0.081 2.8E-06 54.7 11.8 25 204-228 34-58 (275)
243 2ga8_A Hypothetical 39.9 kDa p 95.5 0.0051 1.7E-07 66.0 2.7 31 205-235 25-55 (359)
244 2qor_A Guanylate kinase; phosp 95.5 0.0072 2.5E-07 59.1 3.6 29 201-229 9-37 (204)
245 1w4r_A Thymidine kinase; type 95.5 0.033 1.1E-06 54.7 8.1 69 204-274 20-103 (195)
246 2f6r_A COA synthase, bifunctio 95.4 0.0088 3E-07 62.0 4.2 30 204-234 75-104 (281)
247 1kgd_A CASK, peripheral plasma 95.4 0.0095 3.3E-07 57.1 3.9 26 204-229 5-30 (180)
248 3nh6_A ATP-binding cassette SU 95.3 0.031 1.1E-06 58.7 8.0 27 202-228 78-104 (306)
249 3b6e_A Interferon-induced heli 95.3 0.055 1.9E-06 52.3 9.3 23 205-227 49-71 (216)
250 2j41_A Guanylate kinase; GMP, 95.3 0.01 3.5E-07 57.5 3.8 26 203-228 5-30 (207)
251 3d3q_A TRNA delta(2)-isopenten 95.3 0.0092 3.1E-07 63.7 3.7 33 205-237 8-40 (340)
252 3zvl_A Bifunctional polynucleo 95.3 0.0072 2.5E-07 66.3 2.9 31 203-233 257-287 (416)
253 3exa_A TRNA delta(2)-isopenten 95.2 0.0092 3.1E-07 63.0 3.4 38 204-241 3-40 (322)
254 2xxa_A Signal recognition part 95.2 0.081 2.8E-06 58.3 11.0 70 202-271 98-192 (433)
255 3tau_A Guanylate kinase, GMP k 95.2 0.011 3.7E-07 58.2 3.7 27 203-229 7-33 (208)
256 3fdi_A Uncharacterized protein 95.1 0.014 4.6E-07 57.5 4.1 29 205-233 7-35 (201)
257 3asz_A Uridine kinase; cytidin 95.1 0.011 3.9E-07 57.7 3.5 27 203-229 5-31 (211)
258 2j37_W Signal recognition part 95.1 0.056 1.9E-06 60.7 9.5 36 202-237 99-137 (504)
259 2bdt_A BH3686; alpha-beta prot 95.1 0.014 4.7E-07 56.0 4.0 33 206-239 4-36 (189)
260 1zu4_A FTSY; GTPase, signal re 95.1 0.062 2.1E-06 56.8 9.4 38 201-238 102-142 (320)
261 2oap_1 GSPE-2, type II secreti 94.9 0.019 6.4E-07 64.7 5.2 69 204-272 260-343 (511)
262 2qmh_A HPR kinase/phosphorylas 94.9 0.013 4.4E-07 57.9 3.3 32 204-236 34-65 (205)
263 3tr0_A Guanylate kinase, GMP k 94.8 0.016 5.6E-07 56.0 3.7 33 204-238 7-39 (205)
264 1ex7_A Guanylate kinase; subst 94.8 0.021 7.1E-07 55.7 4.4 28 205-232 2-29 (186)
265 3a00_A Guanylate kinase, GMP k 94.8 0.016 5.3E-07 55.8 3.4 25 205-229 2-26 (186)
266 3eph_A TRNA isopentenyltransfe 94.7 0.015 5.2E-07 63.4 3.6 37 204-240 2-38 (409)
267 1xx6_A Thymidine kinase; NESG, 94.7 0.058 2E-06 52.7 7.4 69 205-274 9-93 (191)
268 3qf4_B Uncharacterized ABC tra 94.6 0.1 3.5E-06 59.9 10.4 28 201-228 378-405 (598)
269 3p32_A Probable GTPase RV1496/ 94.6 0.12 4.3E-06 55.0 10.3 34 203-236 78-114 (355)
270 1c9k_A COBU, adenosylcobinamid 94.6 0.022 7.5E-07 55.3 3.9 32 207-239 2-33 (180)
271 1j8m_F SRP54, signal recogniti 94.6 0.11 3.7E-06 54.3 9.5 36 204-239 98-136 (297)
272 4a82_A Cystic fibrosis transme 94.6 0.086 3E-06 60.1 9.5 27 202-228 365-391 (578)
273 1x6v_B Bifunctional 3'-phospho 94.5 0.028 9.6E-07 64.7 5.1 37 203-239 51-90 (630)
274 2yhs_A FTSY, cell division pro 94.4 0.11 3.9E-06 58.0 9.8 28 201-228 290-317 (503)
275 3thx_B DNA mismatch repair pro 94.4 0.11 3.8E-06 62.4 10.4 25 202-226 671-695 (918)
276 1p9r_A General secretion pathw 94.4 0.1 3.4E-06 57.3 9.3 66 206-271 169-245 (418)
277 4f4c_A Multidrug resistance pr 94.4 0.12 4.1E-06 64.7 11.1 29 201-229 441-469 (1321)
278 3gmt_A Adenylate kinase; ssgci 94.3 0.024 8.3E-07 57.1 3.8 29 206-234 10-38 (230)
279 2gxq_A Heat resistant RNA depe 94.3 0.11 3.7E-06 50.0 8.4 18 205-222 39-56 (207)
280 1lvg_A Guanylate kinase, GMP k 94.3 0.022 7.5E-07 55.6 3.2 26 204-229 4-29 (198)
281 3tui_C Methionine import ATP-b 94.2 0.15 5.1E-06 54.8 9.9 26 203-228 53-78 (366)
282 1vt4_I APAF-1 related killer D 94.2 0.12 4.2E-06 62.5 10.0 43 174-227 131-173 (1221)
283 3ney_A 55 kDa erythrocyte memb 94.1 0.032 1.1E-06 54.8 3.9 27 203-229 18-44 (197)
284 1ls1_A Signal recognition part 94.0 0.12 4E-06 53.9 8.5 70 203-272 97-190 (295)
285 4b3f_X DNA-binding protein smu 94.0 0.083 2.8E-06 61.1 8.0 33 206-238 207-242 (646)
286 1htw_A HI0065; nucleotide-bind 94.0 0.037 1.3E-06 52.3 4.1 26 203-228 32-57 (158)
287 3qf4_A ABC transporter, ATP-bi 94.0 0.12 4.1E-06 59.1 9.1 27 202-228 367-393 (587)
288 1znw_A Guanylate kinase, GMP k 93.9 0.034 1.1E-06 54.4 3.7 27 203-229 19-45 (207)
289 3hdt_A Putative kinase; struct 93.9 0.036 1.2E-06 55.5 3.9 30 205-234 15-44 (223)
290 2jeo_A Uridine-cytidine kinase 93.8 0.036 1.2E-06 55.8 3.9 29 203-231 24-52 (245)
291 2v3c_C SRP54, signal recogniti 93.8 0.06 2E-06 59.3 6.0 36 203-238 98-136 (432)
292 3b60_A Lipid A export ATP-bind 93.8 0.2 7E-06 57.1 10.5 27 202-228 367-393 (582)
293 1z6g_A Guanylate kinase; struc 93.8 0.033 1.1E-06 55.3 3.4 26 203-228 22-47 (218)
294 1gtv_A TMK, thymidylate kinase 93.7 0.017 5.9E-07 56.2 1.3 24 206-229 2-25 (214)
295 1a7j_A Phosphoribulokinase; tr 93.7 0.028 9.4E-07 58.6 2.9 39 204-242 5-46 (290)
296 2axn_A 6-phosphofructo-2-kinas 93.7 0.039 1.3E-06 62.3 4.3 37 203-239 34-73 (520)
297 2gza_A Type IV secretion syste 93.7 0.042 1.4E-06 59.0 4.5 70 203-272 174-262 (361)
298 3b5x_A Lipid A export ATP-bind 93.7 0.21 7.3E-06 56.9 10.5 27 202-228 367-393 (582)
299 2j9r_A Thymidine kinase; TK1, 93.7 0.11 3.8E-06 51.7 7.1 66 207-274 31-113 (214)
300 4eaq_A DTMP kinase, thymidylat 93.7 0.059 2E-06 54.0 5.2 33 203-235 25-59 (229)
301 3thx_A DNA mismatch repair pro 93.7 0.2 6.9E-06 60.3 10.6 23 204-226 662-684 (934)
302 2lna_A AFG3-like protein 2; st 93.6 0.088 3E-06 45.9 5.4 57 35-92 15-76 (99)
303 3lnc_A Guanylate kinase, GMP k 93.6 0.019 6.6E-07 57.1 1.4 26 203-228 26-52 (231)
304 1vec_A ATP-dependent RNA helic 93.6 0.15 5E-06 49.1 7.7 18 205-222 41-58 (206)
305 2v9p_A Replication protein E1; 93.5 0.042 1.4E-06 57.7 3.9 29 200-228 122-150 (305)
306 3b9q_A Chloroplast SRP recepto 93.5 0.066 2.2E-06 56.1 5.4 28 201-228 97-124 (302)
307 2ffh_A Protein (FFH); SRP54, s 93.5 0.28 9.6E-06 53.8 10.5 36 203-238 97-135 (425)
308 1s96_A Guanylate kinase, GMP k 93.3 0.049 1.7E-06 54.3 3.8 28 202-229 14-41 (219)
309 3tqf_A HPR(Ser) kinase; transf 93.3 0.057 1.9E-06 52.1 4.0 28 204-232 16-43 (181)
310 1odf_A YGR205W, hypothetical 3 93.2 0.09 3.1E-06 54.7 5.8 28 202-229 29-56 (290)
311 2og2_A Putative signal recogni 93.2 0.081 2.8E-06 56.8 5.5 28 201-228 154-181 (359)
312 2pl3_A Probable ATP-dependent 93.2 0.22 7.6E-06 49.1 8.4 53 167-221 24-79 (236)
313 3iuy_A Probable ATP-dependent 93.1 0.19 6.5E-06 49.4 7.7 57 164-222 15-75 (228)
314 1wb9_A DNA mismatch repair pro 93.0 0.38 1.3E-05 57.0 11.5 25 203-227 606-630 (800)
315 1m8p_A Sulfate adenylyltransfe 92.9 0.065 2.2E-06 61.2 4.5 36 203-238 395-434 (573)
316 1sq5_A Pantothenate kinase; P- 92.9 0.046 1.6E-06 57.3 3.1 27 203-229 79-105 (308)
317 2ocp_A DGK, deoxyguanosine kin 92.9 0.066 2.3E-06 53.6 4.1 26 204-229 2-27 (241)
318 3tqc_A Pantothenate kinase; bi 92.7 0.11 3.9E-06 54.8 5.8 28 202-229 90-117 (321)
319 1np6_A Molybdopterin-guanine d 92.7 0.069 2.4E-06 51.3 3.7 26 203-228 5-30 (174)
320 1p5z_B DCK, deoxycytidine kina 92.6 0.031 1.1E-06 56.8 1.3 26 203-228 23-48 (263)
321 3cr8_A Sulfate adenylyltranfer 92.6 0.12 4.1E-06 58.7 6.1 38 203-240 368-409 (552)
322 3aez_A Pantothenate kinase; tr 92.5 0.069 2.4E-06 56.2 3.8 27 202-228 88-114 (312)
323 3e70_C DPA, signal recognition 92.3 0.12 4E-06 54.8 5.2 27 202-228 127-153 (328)
324 2qm8_A GTPase/ATPase; G protei 92.2 0.24 8.3E-06 52.5 7.5 26 203-228 54-79 (337)
325 1rj9_A FTSY, signal recognitio 92.1 0.085 2.9E-06 55.3 3.9 26 203-228 101-126 (304)
326 4f4c_A Multidrug resistance pr 92.1 0.29 9.8E-06 61.3 9.1 26 203-228 1104-1129(1321)
327 3fe2_A Probable ATP-dependent 92.1 0.41 1.4E-05 47.5 8.7 56 165-222 26-84 (242)
328 3def_A T7I23.11 protein; chlor 92.0 0.55 1.9E-05 47.5 9.7 25 204-228 36-60 (262)
329 3lxx_A GTPase IMAP family memb 91.9 0.42 1.4E-05 47.4 8.6 24 204-227 29-52 (239)
330 1ewq_A DNA mismatch repair pro 91.9 0.43 1.5E-05 56.2 9.9 24 204-227 576-599 (765)
331 1xjc_A MOBB protein homolog; s 91.9 0.099 3.4E-06 50.1 3.6 33 204-236 4-39 (169)
332 3kta_A Chromosome segregation 91.8 0.1 3.6E-06 49.3 3.8 24 206-229 28-51 (182)
333 1bif_A 6-phosphofructo-2-kinas 91.6 0.051 1.7E-06 60.4 1.5 28 203-230 38-65 (469)
334 2p67_A LAO/AO transport system 91.6 0.4 1.4E-05 50.8 8.4 26 203-228 55-80 (341)
335 2orv_A Thymidine kinase; TP4A 91.6 0.91 3.1E-05 45.6 10.4 67 205-274 20-102 (234)
336 4edh_A DTMP kinase, thymidylat 91.6 0.18 6E-06 50.0 5.2 33 204-236 6-41 (213)
337 3b85_A Phosphate starvation-in 91.5 0.072 2.4E-06 52.7 2.3 24 204-227 22-45 (208)
338 2pcj_A ABC transporter, lipopr 91.5 0.066 2.2E-06 53.5 2.1 26 203-228 29-54 (224)
339 2xau_A PRE-mRNA-splicing facto 91.5 0.28 9.7E-06 57.9 7.8 24 204-227 109-132 (773)
340 2onk_A Molybdate/tungstate ABC 91.4 0.084 2.9E-06 53.4 2.8 26 202-228 23-48 (240)
341 3tif_A Uncharacterized ABC tra 91.4 0.075 2.6E-06 53.5 2.4 26 203-228 30-55 (235)
342 3oiy_A Reverse gyrase helicase 91.3 0.15 5.2E-06 54.9 4.9 20 205-224 37-56 (414)
343 4i1u_A Dephospho-COA kinase; s 91.3 0.13 4.3E-06 51.1 3.9 31 205-236 10-40 (210)
344 2cbz_A Multidrug resistance-as 91.3 0.077 2.6E-06 53.4 2.4 26 203-228 30-55 (237)
345 3g5u_A MCG1178, multidrug resi 91.3 0.34 1.2E-05 60.5 8.6 27 202-228 414-440 (1284)
346 2ged_A SR-beta, signal recogni 91.3 0.25 8.7E-06 46.6 5.9 27 202-228 46-72 (193)
347 2www_A Methylmalonic aciduria 91.3 0.26 8.8E-06 52.5 6.5 25 204-228 74-98 (349)
348 3dz8_A RAS-related protein RAB 91.3 0.61 2.1E-05 44.1 8.6 24 205-228 24-47 (191)
349 1sky_E F1-ATPase, F1-ATP synth 91.2 0.33 1.1E-05 53.8 7.4 22 206-227 153-174 (473)
350 2f9l_A RAB11B, member RAS onco 91.1 0.11 3.8E-06 49.8 3.2 23 205-227 6-28 (199)
351 1oix_A RAS-related protein RAB 91.0 0.11 3.8E-06 49.7 3.1 23 206-228 31-53 (191)
352 1r8s_A ADP-ribosylation factor 91.0 1.6 5.3E-05 39.6 10.9 22 206-227 2-23 (164)
353 3lv8_A DTMP kinase, thymidylat 91.0 0.13 4.4E-06 51.9 3.6 29 203-231 26-57 (236)
354 3ozx_A RNAse L inhibitor; ATP 90.9 0.71 2.4E-05 52.2 10.0 26 203-228 293-318 (538)
355 1b0u_A Histidine permease; ABC 90.8 0.091 3.1E-06 53.8 2.3 25 204-228 32-56 (262)
356 3v9p_A DTMP kinase, thymidylat 90.8 0.19 6.6E-06 50.3 4.7 33 204-236 25-64 (227)
357 3lxw_A GTPase IMAP family memb 90.8 0.51 1.7E-05 47.4 7.9 24 204-227 21-44 (247)
358 3sop_A Neuronal-specific septi 90.8 0.12 4.2E-06 53.1 3.3 23 206-228 4-26 (270)
359 1mv5_A LMRA, multidrug resista 90.8 0.091 3.1E-06 53.1 2.2 26 203-228 27-52 (243)
360 2zj8_A DNA helicase, putative 90.8 0.9 3.1E-05 52.9 11.1 20 203-222 38-57 (720)
361 1g8f_A Sulfate adenylyltransfe 90.7 0.12 3.9E-06 58.2 3.2 27 204-230 395-421 (511)
362 2dyk_A GTP-binding protein; GT 90.7 0.14 4.9E-06 46.5 3.4 22 206-227 3-24 (161)
363 2j0s_A ATP-dependent RNA helic 90.7 0.93 3.2E-05 48.3 10.3 58 166-225 35-95 (410)
364 1lw7_A Transcriptional regulat 90.7 0.13 4.5E-06 55.0 3.5 28 204-231 170-197 (365)
365 1g6h_A High-affinity branched- 90.6 0.092 3.1E-06 53.5 2.2 25 204-228 33-57 (257)
366 2d2e_A SUFC protein; ABC-ATPas 90.6 0.11 3.7E-06 52.7 2.7 25 203-227 28-52 (250)
367 2zu0_C Probable ATP-dependent 90.6 0.12 3.9E-06 53.2 2.9 25 203-227 45-69 (267)
368 1nrj_B SR-beta, signal recogni 90.5 0.16 5.5E-06 49.2 3.8 25 204-228 12-36 (218)
369 1sgw_A Putative ABC transporte 90.5 0.089 3E-06 52.3 1.9 25 204-228 35-59 (214)
370 2pze_A Cystic fibrosis transme 90.5 0.098 3.4E-06 52.4 2.2 26 203-228 33-58 (229)
371 3tmk_A Thymidylate kinase; pho 90.5 0.26 8.9E-06 49.0 5.2 32 204-235 5-36 (216)
372 2gk6_A Regulator of nonsense t 90.5 0.14 4.6E-06 59.1 3.6 33 206-238 197-233 (624)
373 2ff7_A Alpha-hemolysin translo 90.4 0.099 3.4E-06 53.0 2.2 26 203-228 34-59 (247)
374 2ghi_A Transport protein; mult 90.4 0.1 3.6E-06 53.3 2.4 26 203-228 45-70 (260)
375 1ji0_A ABC transporter; ATP bi 90.4 0.1 3.5E-06 52.6 2.2 25 204-228 32-56 (240)
376 2olj_A Amino acid ABC transpor 90.4 0.11 3.6E-06 53.4 2.3 26 203-228 49-74 (263)
377 1z2a_A RAS-related protein RAB 90.3 0.15 5.2E-06 46.6 3.2 24 204-227 5-28 (168)
378 2f1r_A Molybdopterin-guanine d 90.3 0.11 3.7E-06 49.8 2.1 24 205-228 3-26 (171)
379 2ixe_A Antigen peptide transpo 90.3 0.11 3.7E-06 53.5 2.4 26 203-228 44-69 (271)
380 3fvq_A Fe(3+) IONS import ATP- 90.2 0.12 4.3E-06 55.4 2.8 25 204-228 30-54 (359)
381 2qi9_C Vitamin B12 import ATP- 90.1 0.11 3.7E-06 52.9 2.2 26 203-228 25-50 (249)
382 2va8_A SSO2462, SKI2-type heli 90.1 1.3 4.3E-05 51.6 11.5 22 202-223 44-65 (715)
383 2yz2_A Putative ABC transporte 90.0 0.12 4E-06 53.0 2.4 26 203-228 32-57 (266)
384 1w36_D RECD, exodeoxyribonucle 90.0 0.15 5.3E-06 58.5 3.6 23 205-227 165-187 (608)
385 1vpl_A ABC transporter, ATP-bi 90.0 0.12 4E-06 52.8 2.3 26 203-228 40-65 (256)
386 3e2i_A Thymidine kinase; Zn-bi 90.0 0.38 1.3E-05 47.9 5.9 68 206-274 30-113 (219)
387 2ce2_X GTPase HRAS; signaling 89.9 0.17 5.7E-06 46.0 3.1 22 206-227 5-26 (166)
388 4g1u_C Hemin import ATP-bindin 89.9 0.11 3.7E-06 53.4 2.0 26 203-228 36-61 (266)
389 1kao_A RAP2A; GTP-binding prot 89.9 0.17 5.9E-06 46.0 3.2 23 205-227 4-26 (167)
390 2wsm_A Hydrogenase expression/ 89.8 0.23 7.8E-06 48.3 4.2 26 204-229 30-55 (221)
391 2nq2_C Hypothetical ABC transp 89.8 0.12 4E-06 52.7 2.1 26 203-228 30-55 (253)
392 3eiq_A Eukaryotic initiation f 89.8 0.65 2.2E-05 49.4 8.1 56 166-223 38-96 (414)
393 1svi_A GTP-binding protein YSX 89.8 0.12 4.1E-06 49.0 2.1 25 203-227 22-46 (195)
394 3vkw_A Replicase large subunit 89.7 0.11 3.9E-06 57.1 2.1 24 203-226 160-183 (446)
395 2ihy_A ABC transporter, ATP-bi 89.7 0.12 4.1E-06 53.5 2.2 27 203-229 46-72 (279)
396 2it1_A 362AA long hypothetical 89.7 0.15 5E-06 54.9 2.9 25 204-228 29-53 (362)
397 2yyz_A Sugar ABC transporter, 89.7 0.15 5E-06 54.8 2.9 25 204-228 29-53 (359)
398 1z47_A CYSA, putative ABC-tran 89.7 0.14 4.8E-06 54.9 2.7 25 204-228 41-65 (355)
399 1u8z_A RAS-related protein RAL 89.6 0.19 6.4E-06 45.8 3.2 23 205-227 5-27 (168)
400 1ek0_A Protein (GTP-binding pr 89.5 0.19 6.5E-06 45.9 3.2 23 205-227 4-26 (170)
401 1v43_A Sugar-binding transport 89.5 0.15 5.2E-06 54.9 2.9 25 204-228 37-61 (372)
402 3rlf_A Maltose/maltodextrin im 89.5 0.15 5.3E-06 55.1 2.9 25 204-228 29-53 (381)
403 3d31_A Sulfate/molybdate ABC t 89.4 0.13 4.5E-06 54.9 2.3 25 204-228 26-50 (348)
404 2wji_A Ferrous iron transport 89.4 0.18 6.3E-06 46.7 3.0 23 205-227 4-26 (165)
405 1z0j_A RAB-22, RAS-related pro 89.4 0.19 6.6E-06 46.0 3.2 24 205-228 7-30 (170)
406 2o8b_B DNA mismatch repair pro 89.3 1.1 3.8E-05 54.5 10.5 22 204-225 789-810 (1022)
407 1g16_A RAS-related protein SEC 89.3 0.2 6.7E-06 46.0 3.1 23 205-227 4-26 (170)
408 2zej_A Dardarin, leucine-rich 89.3 0.16 5.4E-06 48.1 2.5 21 206-226 4-24 (184)
409 1g29_1 MALK, maltose transport 89.3 0.16 5.3E-06 54.9 2.7 25 204-228 29-53 (372)
410 2gks_A Bifunctional SAT/APS ki 89.3 0.28 9.7E-06 55.5 5.0 35 204-238 372-409 (546)
411 3szr_A Interferon-induced GTP- 89.3 0.29 9.9E-06 56.2 5.1 26 201-227 43-68 (608)
412 1wms_A RAB-9, RAB9, RAS-relate 89.2 0.2 6.9E-06 46.4 3.2 24 204-227 7-30 (177)
413 1z08_A RAS-related protein RAB 89.2 0.2 7E-06 45.9 3.2 24 204-227 6-29 (170)
414 2nzj_A GTP-binding protein REM 89.1 0.2 6.8E-06 46.3 3.0 23 205-227 5-27 (175)
415 1yrb_A ATP(GTP)binding protein 89.1 0.42 1.4E-05 47.8 5.6 35 202-236 12-48 (262)
416 2lkc_A Translation initiation 89.0 0.22 7.7E-06 46.1 3.3 24 203-226 7-30 (178)
417 2pjz_A Hypothetical protein ST 89.0 0.15 5E-06 52.4 2.1 25 204-228 30-54 (263)
418 1r2q_A RAS-related protein RAB 89.0 0.22 7.5E-06 45.5 3.2 24 204-227 6-29 (170)
419 1upt_A ARL1, ADP-ribosylation 89.0 0.27 9.3E-06 45.1 3.8 24 204-227 7-30 (171)
420 1ky3_A GTP-binding protein YPT 89.0 0.22 7.5E-06 46.2 3.2 24 204-227 8-31 (182)
421 2wjg_A FEOB, ferrous iron tran 88.9 0.19 6.4E-06 47.3 2.7 23 205-227 8-30 (188)
422 1c1y_A RAS-related protein RAP 88.8 0.23 7.8E-06 45.3 3.2 23 205-227 4-26 (167)
423 1wp9_A ATP-dependent RNA helic 88.8 1.9 6.6E-05 46.0 11.1 33 206-238 25-61 (494)
424 2erx_A GTP-binding protein DI- 88.8 0.19 6.5E-06 46.0 2.7 23 205-227 4-26 (172)
425 2p5s_A RAS and EF-hand domain 88.7 0.25 8.6E-06 47.2 3.5 25 203-227 27-51 (199)
426 3bc1_A RAS-related protein RAB 88.7 0.23 7.9E-06 46.5 3.2 24 204-227 11-34 (195)
427 3q85_A GTP-binding protein REM 88.7 0.22 7.7E-06 45.7 3.0 21 206-226 4-24 (169)
428 1oxx_K GLCV, glucose, ABC tran 88.6 0.13 4.6E-06 55.0 1.6 25 204-228 31-55 (353)
429 3q72_A GTP-binding protein RAD 88.6 0.21 7.2E-06 45.7 2.8 21 206-226 4-24 (166)
430 2p6r_A Afuhel308 helicase; pro 88.5 0.64 2.2E-05 54.0 7.5 18 205-222 41-58 (702)
431 2y8e_A RAB-protein 6, GH09086P 88.5 0.24 8.1E-06 45.8 3.1 23 205-227 15-37 (179)
432 3ld9_A DTMP kinase, thymidylat 88.5 0.28 9.5E-06 49.0 3.7 32 203-234 20-55 (223)
433 3ly5_A ATP-dependent RNA helic 88.5 1.1 3.8E-05 45.2 8.4 18 205-222 92-109 (262)
434 3g5u_A MCG1178, multidrug resi 88.4 1 3.4E-05 56.3 9.5 26 203-228 1058-1083(1284)
435 1oyw_A RECQ helicase, ATP-depe 88.4 0.64 2.2E-05 52.2 7.1 20 205-224 41-60 (523)
436 2wjy_A Regulator of nonsense t 88.4 0.23 8E-06 58.8 3.6 31 206-236 373-407 (800)
437 2hxs_A RAB-26, RAS-related pro 88.4 0.22 7.6E-06 46.1 2.8 23 204-226 6-28 (178)
438 3gd7_A Fusion complex of cysti 88.4 0.2 6.8E-06 54.4 2.8 26 203-228 46-71 (390)
439 1z0f_A RAB14, member RAS oncog 88.4 0.25 8.7E-06 45.6 3.2 24 204-227 15-38 (179)
440 2bbs_A Cystic fibrosis transme 88.3 0.18 6.1E-06 52.5 2.3 26 203-228 63-88 (290)
441 3iby_A Ferrous iron transport 88.3 0.63 2.2E-05 47.2 6.3 22 206-227 3-24 (256)
442 4dsu_A GTPase KRAS, isoform 2B 88.2 0.26 8.8E-06 46.1 3.2 23 205-227 5-27 (189)
443 2fn4_A P23, RAS-related protei 88.2 0.25 8.7E-06 45.7 3.1 23 205-227 10-32 (181)
444 3con_A GTPase NRAS; structural 88.2 0.26 9E-06 46.4 3.2 23 205-227 22-44 (190)
445 1m7b_A RND3/RHOE small GTP-bin 88.1 0.26 8.8E-06 46.5 3.1 24 204-227 7-30 (184)
446 2vp4_A Deoxynucleoside kinase; 88.1 0.28 9.5E-06 48.7 3.4 24 204-227 20-43 (230)
447 2a9k_A RAS-related protein RAL 88.1 0.27 9.3E-06 45.8 3.2 23 205-227 19-41 (187)
448 1ko7_A HPR kinase/phosphatase; 88.0 0.32 1.1E-05 51.2 3.9 29 204-233 144-172 (314)
449 2efe_B Small GTP-binding prote 88.0 0.27 9.3E-06 45.7 3.2 24 204-227 12-35 (181)
450 2gj8_A MNME, tRNA modification 88.0 0.25 8.5E-06 46.4 2.9 23 205-227 5-27 (172)
451 3clv_A RAB5 protein, putative; 88.0 0.32 1.1E-05 45.8 3.7 24 204-227 7-30 (208)
452 2oil_A CATX-8, RAS-related pro 88.0 0.27 9.3E-06 46.5 3.2 24 204-227 25-48 (193)
453 1dek_A Deoxynucleoside monopho 87.9 0.45 1.5E-05 48.1 4.9 27 206-232 3-29 (241)
454 3t1o_A Gliding protein MGLA; G 87.9 0.27 9.2E-06 46.2 3.1 25 204-228 14-38 (198)
455 2bme_A RAB4A, RAS-related prot 87.9 0.27 9.3E-06 46.0 3.1 24 204-227 10-33 (186)
456 1knx_A Probable HPR(Ser) kinas 87.8 0.29 9.8E-06 51.5 3.5 30 204-234 147-176 (312)
457 1pui_A ENGB, probable GTP-bind 87.8 0.13 4.4E-06 49.6 0.7 25 203-227 25-49 (210)
458 4ag6_A VIRB4 ATPase, type IV s 87.8 0.51 1.7E-05 50.7 5.6 25 203-227 34-58 (392)
459 2atv_A RERG, RAS-like estrogen 87.7 0.33 1.1E-05 46.2 3.6 24 204-227 28-51 (196)
460 3tw8_B RAS-related protein RAB 87.7 0.26 9E-06 45.6 2.8 23 204-226 9-31 (181)
461 2hf9_A Probable hydrogenase ni 87.6 0.33 1.1E-05 47.3 3.6 25 204-228 38-62 (226)
462 2npi_A Protein CLP1; CLP1-PCF1 87.5 0.29 1E-05 54.3 3.5 26 203-228 137-162 (460)
463 1mh1_A RAC1; GTP-binding, GTPa 87.5 0.33 1.1E-05 45.2 3.4 23 205-227 6-28 (186)
464 3t34_A Dynamin-related protein 87.4 2.1 7E-05 45.4 10.0 22 206-227 36-57 (360)
465 2g6b_A RAS-related protein RAB 87.4 0.31 1.1E-05 45.2 3.2 25 203-227 9-33 (180)
466 3kkq_A RAS-related protein M-R 87.4 0.31 1.1E-05 45.5 3.2 24 204-227 18-41 (183)
467 2gf9_A RAS-related protein RAB 87.3 0.32 1.1E-05 45.9 3.2 23 205-227 23-45 (189)
468 2obl_A ESCN; ATPase, hydrolase 87.3 0.44 1.5E-05 50.8 4.6 28 204-231 71-98 (347)
469 1f2t_A RAD50 ABC-ATPase; DNA d 87.3 0.34 1.2E-05 44.9 3.3 23 206-228 25-47 (149)
470 3ch4_B Pmkase, phosphomevalona 87.2 0.5 1.7E-05 46.5 4.6 38 202-239 9-47 (202)
471 3tbk_A RIG-I helicase domain; 87.2 3.8 0.00013 45.0 12.5 34 205-238 20-61 (555)
472 1nij_A Hypothetical protein YJ 87.2 0.46 1.6E-05 49.8 4.7 23 206-228 6-28 (318)
473 3b1v_A Ferrous iron uptake tra 87.1 0.83 2.8E-05 46.8 6.4 23 205-227 4-26 (272)
474 3tkl_A RAS-related protein RAB 87.1 0.33 1.1E-05 45.8 3.2 24 204-227 16-39 (196)
475 1m2o_B GTP-binding protein SAR 87.1 0.35 1.2E-05 46.0 3.4 23 205-227 24-46 (190)
476 2cxx_A Probable GTP-binding pr 87.1 0.3 1E-05 45.8 2.9 22 206-227 3-24 (190)
477 4tmk_A Protein (thymidylate ki 87.0 0.36 1.2E-05 47.8 3.5 24 205-228 4-27 (213)
478 2b6h_A ADP-ribosylation factor 86.9 0.42 1.4E-05 45.5 3.9 24 203-226 28-51 (192)
479 3ice_A Transcription terminati 86.9 0.44 1.5E-05 51.7 4.3 24 204-227 174-197 (422)
480 1u0l_A Probable GTPase ENGC; p 86.9 0.38 1.3E-05 50.0 3.8 25 205-229 170-194 (301)
481 2xzl_A ATP-dependent helicase 86.9 0.3 1E-05 58.0 3.3 33 206-238 377-413 (802)
482 1moz_A ARL1, ADP-ribosylation 86.9 0.37 1.3E-05 44.9 3.3 24 203-226 17-40 (183)
483 2bov_A RAla, RAS-related prote 86.8 0.35 1.2E-05 46.1 3.2 23 205-227 15-37 (206)
484 1x3s_A RAS-related protein RAB 86.8 0.35 1.2E-05 45.5 3.2 24 204-227 15-38 (195)
485 3pqc_A Probable GTP-binding pr 86.8 0.28 9.7E-06 46.1 2.5 23 205-227 24-46 (195)
486 3c5c_A RAS-like protein 12; GD 86.8 0.35 1.2E-05 45.8 3.2 23 205-227 22-44 (187)
487 3k53_A Ferrous iron transport 86.7 0.31 1E-05 49.6 2.9 23 205-227 4-26 (271)
488 1vg8_A RAS-related protein RAB 86.7 0.35 1.2E-05 46.1 3.2 24 204-227 8-31 (207)
489 3sqw_A ATP-dependent RNA helic 86.7 1.6 5.4E-05 49.4 9.1 56 165-220 14-76 (579)
490 2yv5_A YJEQ protein; hydrolase 86.7 0.54 1.9E-05 48.9 4.8 23 205-228 166-188 (302)
491 1tq4_A IIGP1, interferon-induc 86.6 0.34 1.2E-05 52.9 3.4 23 205-227 70-92 (413)
492 2fg5_A RAB-22B, RAS-related pr 86.6 0.35 1.2E-05 45.9 3.1 24 204-227 23-46 (192)
493 3ihw_A Centg3; RAS, centaurin, 86.6 0.36 1.2E-05 45.8 3.2 23 205-227 21-43 (184)
494 3bwd_D RAC-like GTP-binding pr 86.6 0.43 1.5E-05 44.3 3.7 24 204-227 8-31 (182)
495 3t5g_A GTP-binding protein RHE 86.6 0.36 1.2E-05 45.0 3.1 24 204-227 6-29 (181)
496 1zd9_A ADP-ribosylation factor 86.5 0.37 1.3E-05 45.6 3.2 24 204-227 22-45 (188)
497 3reg_A RHO-like small GTPase; 86.5 0.37 1.3E-05 45.7 3.2 24 204-227 23-46 (194)
498 1z06_A RAS-related protein RAB 86.5 0.37 1.3E-05 45.4 3.2 23 205-227 21-43 (189)
499 2iwr_A Centaurin gamma 1; ANK 86.4 0.28 9.7E-06 45.6 2.2 23 205-227 8-30 (178)
500 2bcg_Y Protein YP2, GTP-bindin 86.3 0.37 1.3E-05 46.2 3.1 24 204-227 8-31 (206)
No 1
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=3.9e-83 Score=717.52 Aligned_cols=443 Identities=33% Similarity=0.574 Sum_probs=374.4
Q ss_pred CCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccch-
Q 005285 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS- 243 (704)
Q Consensus 165 ~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~- 243 (704)
.++++|+||+|.+++++++++++.++++|..|...|.+.|+|+||+||||||||++|+++|++++.||+.++++++.+.
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCC----CCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEE
Q 005285 244 EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHA----RKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICA 319 (704)
Q Consensus 244 ~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~----~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaa 319 (704)
.+.+..+++.+|..|+..+||||||||+|+++.++. +.+++..+++++|+.+|+++... .+++||+|
T Consensus 90 ~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~---------~~viVIaa 160 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK---------EGIIVMAA 160 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG---------GTEEEEEE
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC---------CCEEEEEe
Confidence 577888899999999999999999999999976543 34567788999999999986543 35999999
Q ss_pred cCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Q 005285 320 TNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKG 399 (704)
Q Consensus 320 TN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r~~ 399 (704)
||+++.||++++||||||+.|.++.|+.++|.+|++.|+++.++..++++..++..|+||+|+||.++|++|++.|.+++
T Consensus 161 Tn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~ 240 (476)
T 2ce7_A 161 TNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREG 240 (476)
T ss_dssp ESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999888888999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHHhccccccchhhhhhhccchhhHHHHHHHHHHHHHHHHHhhcCCCcccceeeeccCC-ceeeE
Q 005285 400 HSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGG-KETAI 478 (704)
Q Consensus 400 ~~~It~~dl~~Al~~~~~~~~g~~~~~~~~~~~~~~~~~~~k~~~A~HEaGhalva~~~p~~~~~~~~~i~p~~-~~~~~ 478 (704)
...|+.+|+.+|+++++. |. .+....+++++++.+||||+|||++++.+|+.++.++++|.|+| .++|+
T Consensus 241 ~~~I~~~dl~~al~~v~~---~~-------~~~~~~~~~~e~~~~a~~e~G~a~~~~~l~~~~~~~~~~i~prg~~alg~ 310 (476)
T 2ce7_A 241 RDKITMKDFEEAIDRVIA---GP-------ARKSLLISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKALGY 310 (476)
T ss_dssp CSSBCHHHHHHHHHHHC------------------CCCHHHHHHHHHHHHHHHHHHHHSTTCCCCCEEECC---------
T ss_pred CCeecHHHHHHHHHHHhc---Cc-------cccchhhhcchhhhhHHHHhhhHHHhhccCCccccceeeeecCcccccce
Confidence 899999999999998753 21 22345678889999999999999999999999999999999999 89999
Q ss_pred EEecccccccccccccHHHHHHHHHHHhhhhHHHHhHcCCCCCCCCchhHHHHHHHHHHHHhcccccccCcccccccccc
Q 005285 479 SVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDDVTDGGKDDLEKITKIAREMVISPQNARLGLAGLTRRVGL 558 (704)
Q Consensus 479 t~~~p~e~~~~~~~~t~~~l~~~i~v~LgGRaAEelvfG~~vttGas~DL~~AT~iA~~MV~~~~~~~~g~~~~~~~~g~ 558 (704)
|+++|.+|.+ ++||.+|+++|+++|||||||+++||+ +||||+|||++||+||+.||++| ||++++|+
T Consensus 311 ~~~~p~~~~~---~~~~~~l~~~i~~~l~Gr~ae~~~~g~-~~~ga~~Dl~~at~~a~~mv~~~--------gm~~~~g~ 378 (476)
T 2ce7_A 311 TLHLPEEDKY---LVSRNELLDKLTALLGGRAAEEVVFGD-VTSGAANDIERATEIARNMVCQL--------GMSEELGP 378 (476)
T ss_dssp --------CC---SCBHHHHHHHHHHHTHHHHHHHHHHSS-CCGGGHHHHHHHHHHHHHHHHTS--------CCCTTTCS
T ss_pred EEEcCccccc---ccCHHHHHHHHHHHHhHHHHHhhhcCC-CCcccHHHHHHHHHHHHHHHHHh--------CCCCcCCc
Confidence 9999998753 569999999999999999999999994 99999999999999999999994 45555666
Q ss_pred cCCCCCCCCccccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhcccCHHHHHH
Q 005285 559 LDRPDSSDGDLIKYRWDDPQVIPTDMTLELSELFTRELTRYIEETEELAMNGLRDNKHILEIIAKELLENSRITGLEVEE 638 (704)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~a~~iD~Ev~~il~~ay~~A~~lL~~nr~~L~~lA~~LlekEtL~g~ei~~ 638 (704)
+.+.....+.|++.++ ...++||++|++.||+||+++|++||++|++||++||+.|++||++|+|+|||+++||++
T Consensus 379 ~~~~~~~~~~~~~~~~----~~~~~~s~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~ 454 (476)
T 2ce7_A 379 LAWGKEEQEVFLGKEI----TRLRNYSEEVASKIDEEVKKIVTNCYERAKEIIRKYRKQLDNIVEILLEKETIEGDELRR 454 (476)
T ss_dssp CCCCC-----------------CCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHH
T ss_pred eeecCCCccccccccc----cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHHH
Confidence 6655444445555432 235789999999999999999999999999999999999999999999999999999999
Q ss_pred HHcC
Q 005285 639 KLQG 642 (704)
Q Consensus 639 il~~ 642 (704)
|+..
T Consensus 455 ~~~~ 458 (476)
T 2ce7_A 455 ILSE 458 (476)
T ss_dssp HTC-
T ss_pred Hhcc
Confidence 9975
No 2
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=4.6e-81 Score=704.39 Aligned_cols=458 Identities=35% Similarity=0.574 Sum_probs=398.9
Q ss_pred hhhhhhhhhcccccCCCcccCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHH
Q 005285 145 NQLFDMAYAENFILPVGYVSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTL 224 (704)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LArai 224 (704)
++.|+|++++++++.. . ++++|+||+|.+++++.+++++.+++++..|...|.+.|+|+||+||||||||+||+++
T Consensus 9 ~~~~~~~~~~~~~~~~---~-~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraI 84 (499)
T 2dhr_A 9 DSAFSFTKSRARVLTE---A-PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAV 84 (499)
T ss_dssp ---------CCEEECS---C-CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHH
T ss_pred CCCCCcccCcceeecc---C-CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHH
Confidence 4578899999876642 3 78999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCEEEEeCccccch-hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCC----CCChhHHHHHHHHHHHhcCC
Q 005285 225 AKESGLPFVFASGAEFTDS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHA----RKDPRRRATFEALIAQLDGD 299 (704)
Q Consensus 225 A~e~g~~~v~is~s~~~~~-~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~----~~~~e~~~~ln~LL~~ld~~ 299 (704)
|++++.+|++++++++.+. .+.+..+++.+|+.++...|||+||||||.++.++. +.+++..+++++++.+|+++
T Consensus 85 a~~~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~ 164 (499)
T 2dhr_A 85 AGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 164 (499)
T ss_dssp HHHTTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGC
T ss_pred HHHhCCCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccc
Confidence 9999999999999999887 566778899999999888899999999999976543 23567788999999999987
Q ss_pred cccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCC
Q 005285 300 KERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGF 379 (704)
Q Consensus 300 ~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~ 379 (704)
.... .++++++||+|+.||++++||||||++|.|+.|+.++|.+||+.|+++.++..++++..++..++|+
T Consensus 165 ~~~~---------~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~ 235 (499)
T 2dhr_A 165 EKDT---------AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGF 235 (499)
T ss_dssp CSSC---------CCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSC
T ss_pred ccCc---------cEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCC
Confidence 5433 4899999999999999999999999999999999999999999999888888899999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhccccccchhhhhhhccchhhHHHHHHHHHHHHHHHHHhhcC
Q 005285 380 SGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFP 459 (704)
Q Consensus 380 sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al~~~~~~~~g~~~~~~~~~~~~~~~~~~~k~~~A~HEaGhalva~~~p 459 (704)
+|+||+++|++|++.|.+++...|+.+|+.+|+++++.. . ++....+++++++.+||||+|||++++++|
T Consensus 236 ~gadL~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v~~~---~-------~~~~~~~~~~e~~~~a~~e~g~av~~~~l~ 305 (499)
T 2dhr_A 236 VGADLENLLNEAALLAAREGRRKITMKDLEEAADRVMML---P-------AKKSLVLSPRDRRITAYHEAGHALAAHFLE 305 (499)
T ss_dssp CHHHHHHHHHHHHHHHTTTCCSSCCSHHHHHHHHHHTTC---S-------SSSCCCCCTTHHHHHHHHHHHHHHHHCCSS
T ss_pred CHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhcc---c-------ccccchhhHHHHhhhHHHHHHHHHHHhhcC
Confidence 999999999999999999888899999999999987632 1 223456788889999999999999999999
Q ss_pred CCcccceeeeccCCceeeEEEeccc-ccccccccccHHHHHHHHHHHhhhhHHHHhHcCCCCCCCCchhHHHHHHHHHHH
Q 005285 460 RFDWHAFSQLLPGGKETAISVFYPR-EDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDDVTDGGKDDLEKITKIAREM 538 (704)
Q Consensus 460 ~~~~~~~~~i~p~~~~~~~t~~~p~-e~~~~~~~~t~~~l~~~i~v~LgGRaAEelvfG~~vttGas~DL~~AT~iA~~M 538 (704)
+.+++++++|.|+++++|+++ |. ++++ ++|+.+|+++|+++|||||||+++|| ++||||+|||++||+||+.|
T Consensus 306 ~~~~v~~~~i~pr~~~~g~~~--p~q~~~~---~~t~~~l~~~i~~~lgGr~ae~~~~g-~~~~ga~~Dl~~at~~a~~m 379 (499)
T 2dhr_A 306 HADGVHKVTIVPRGRALGFMM--PRREDML---HWSRKRLLDQIAVALAGRAAEEIVFD-DVTTGAENDFRQATELARRM 379 (499)
T ss_dssp SCCCCCCEESCCSSCTTCSSH--HHHTTCC---CCCHHHHHHHHHHHHHHHHHHHHHSC-SCCBCCCHHHHHHHHHHHHH
T ss_pred CCCeeeEEEeecCCCcCcccc--cchhhhh---ccCHHHHHHHHHHHhhhHhHHHhhhc-ccCcccHHHHHHHHHHHHHH
Confidence 999999999999999888887 87 6643 46999999999999999999999999 59999999999999999999
Q ss_pred HhcccccccCcccccccccccCCCCCCCCccccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHH
Q 005285 539 VISPQNARLGLAGLTRRVGLLDRPDSSDGDLIKYRWDDPQVIPTDMTLELSELFTRELTRYIEETEELAMNGLRDNKHIL 618 (704)
Q Consensus 539 V~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~a~~iD~Ev~~il~~ay~~A~~lL~~nr~~L 618 (704)
|++| ||++++|++.+....+ .|++ ++. .++||++|+..||+||+++|++||++|++||++||+.|
T Consensus 380 v~~~--------gm~~~~g~~~~~~~~~-~~~~-~~~-----~~~~s~~~~~~i~~~v~~~~~~~~~~~~~~l~~~~~~l 444 (499)
T 2dhr_A 380 ITEW--------GMHPEFGPVAYAVRED-TYLG-GYD-----VRQYSEETAKRIDEAVRRLIEEQYQRVKALLLEKREVL 444 (499)
T ss_dssp HTTS--------CCCSSSCSCCCCCCCC-CSSC-CCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHh--------CCCCCCCceeecCCCc-cccc-ccc-----ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9994 4555556655543333 4444 221 46899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCHHHHHHHHcCCCCC
Q 005285 619 EIIAKELLENSRITGLEVEEKLQGLSPV 646 (704)
Q Consensus 619 ~~lA~~LlekEtL~g~ei~~il~~~~~~ 646 (704)
++||++|+|+|||+++||++|+....+.
T Consensus 445 ~~~a~~l~~~e~l~~~~~~~~~~~~~~~ 472 (499)
T 2dhr_A 445 ERVAETLLERETLTAEEFQRVVEGLPLE 472 (499)
T ss_dssp HHHHHHHHHHSEECHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHhCeeCHHHHHHHhccCCCC
Confidence 9999999999999999999999875443
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-51 Score=448.11 Aligned_cols=246 Identities=32% Similarity=0.521 Sum_probs=231.3
Q ss_pred ccCCCccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCcccc
Q 005285 163 VSDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (704)
Q Consensus 163 ~~~~~~~f~dVvG~~~~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~ 241 (704)
.+.|+++|+||.|.+++|++|++.+.+ +++|+.|..+|+++|+|+|||||||||||++|+|+|++++.+|+.++++++.
T Consensus 140 ~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 219 (405)
T 4b4t_J 140 EKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELV 219 (405)
T ss_dssp ECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGS
T ss_pred cCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhh
Confidence 467899999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred ch-hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCC----ChhHHHHHHHHHHHhcCCcccCCccccccCccEEE
Q 005285 242 DS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK----DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (704)
Q Consensus 242 ~~-~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~----~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (704)
.+ .|.++..++.+|..|+..+||||||||||++++++..+ +.+..+++++||.+||++.... +|+|
T Consensus 220 sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~---------~V~v 290 (405)
T 4b4t_J 220 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSK---------NIKI 290 (405)
T ss_dssp CSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCC---------CEEE
T ss_pred ccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCC---------CeEE
Confidence 98 58899999999999999999999999999998776432 3456779999999999976544 4999
Q ss_pred EEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 005285 317 ICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSV 396 (704)
Q Consensus 317 IaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~ 396 (704)
|+|||+|+.|||||+||||||++|+|++||.++|.+||+.|+++.++..++|+..||..|.||||+||+++|++|++.|+
T Consensus 291 IaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Ai 370 (405)
T 4b4t_J 291 IMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYAL 370 (405)
T ss_dssp EEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHH
T ss_pred EeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCcccHHHHHHHHHHHHH
Q 005285 397 RKGHSKIQQQDIVDVLDKQLL 417 (704)
Q Consensus 397 r~~~~~It~~dl~~Al~~~~~ 417 (704)
++++..|+++||..|+++++.
T Consensus 371 r~~~~~vt~~Df~~Al~~v~~ 391 (405)
T 4b4t_J 371 RERRIHVTQEDFELAVGKVMN 391 (405)
T ss_dssp HTTCSBCCHHHHHHHHHHHHH
T ss_pred HcCCCCcCHHHHHHHHHHHhC
Confidence 999999999999999999863
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-50 Score=439.79 Aligned_cols=246 Identities=32% Similarity=0.532 Sum_probs=231.2
Q ss_pred ccCCCccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCcccc
Q 005285 163 VSDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (704)
Q Consensus 163 ~~~~~~~f~dVvG~~~~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~ 241 (704)
++.++++|+||+|.+++|++|++.+.+ +++|+.|...|+++|+|||||||||||||++|+|+|++++.+|+.++++++.
T Consensus 174 ~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~ 253 (437)
T 4b4t_I 174 DKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELI 253 (437)
T ss_dssp ESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGC
T ss_pred ccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhh
Confidence 467899999999999999999999987 9999999999999999999999999999999999999999999999999999
Q ss_pred ch-hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCC----CChhHHHHHHHHHHHhcCCcccCCccccccCccEEE
Q 005285 242 DS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR----KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (704)
Q Consensus 242 ~~-~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~----~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (704)
.+ .+.++..++.+|..|+..+||||||||+|++++++.. ++.+...++++||.+||++.... +|+|
T Consensus 254 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~---------~ViV 324 (437)
T 4b4t_I 254 QKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRG---------DVKV 324 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSS---------SEEE
T ss_pred hccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCC---------CEEE
Confidence 98 5888999999999999999999999999999887632 34456789999999999976544 4999
Q ss_pred EEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 005285 317 ICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSV 396 (704)
Q Consensus 317 IaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~ 396 (704)
|+|||+|+.||+||+||||||++|+|++||.++|.+||+.|+++.++..++|+..||..|.||||+||+++|++|++.|+
T Consensus 325 IaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Ai 404 (437)
T 4b4t_I 325 IMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLAL 404 (437)
T ss_dssp EEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHH
T ss_pred EEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCcccHHHHHHHHHHHHH
Q 005285 397 RKGHSKIQQQDIVDVLDKQLL 417 (704)
Q Consensus 397 r~~~~~It~~dl~~Al~~~~~ 417 (704)
++++..|+++||.+|+++++.
T Consensus 405 r~~~~~It~eDf~~Al~rv~~ 425 (437)
T 4b4t_I 405 RERRMQVTAEDFKQAKERVMK 425 (437)
T ss_dssp HTTCSCBCHHHHHHHHHHHHH
T ss_pred HcCCCccCHHHHHHHHHHHhC
Confidence 999999999999999998763
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-49 Score=437.80 Aligned_cols=246 Identities=32% Similarity=0.551 Sum_probs=230.6
Q ss_pred ccCCCccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCcccc
Q 005285 163 VSDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (704)
Q Consensus 163 ~~~~~~~f~dVvG~~~~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~ 241 (704)
++.|+++|+||+|.+++|++|++.+.+ +++|+.|..+|+++|+|||||||||||||++|+|+|++++++|+.++++++.
T Consensus 201 ~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~ 280 (467)
T 4b4t_H 201 EEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELV 280 (467)
T ss_dssp ESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhh
Confidence 467899999999999999999999887 9999999999999999999999999999999999999999999999999999
Q ss_pred ch-hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCC----ChhHHHHHHHHHHHhcCCcccCCccccccCccEEE
Q 005285 242 DS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK----DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (704)
Q Consensus 242 ~~-~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~----~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (704)
++ .|.++..++.+|..|+..+||||||||+|+++.+|... +.....+++++|.+||++.... +|+|
T Consensus 281 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~---------~ViV 351 (467)
T 4b4t_H 281 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG---------NIKV 351 (467)
T ss_dssp CCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT---------TEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC---------cEEE
Confidence 98 68899999999999999999999999999998776432 2345678999999999976543 4999
Q ss_pred EEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 005285 317 ICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSV 396 (704)
Q Consensus 317 IaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~ 396 (704)
|+|||+|+.||+||+||||||++|+|++|+.++|.+||+.|+++.++..++|+..||..|.||||+||+++|++|++.|+
T Consensus 352 IaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Ai 431 (467)
T 4b4t_H 352 MFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAI 431 (467)
T ss_dssp EEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHH
T ss_pred EeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCcccHHHHHHHHHHHHH
Q 005285 397 RKGHSKIQQQDIVDVLDKQLL 417 (704)
Q Consensus 397 r~~~~~It~~dl~~Al~~~~~ 417 (704)
++++..|+++||.+|+++++.
T Consensus 432 r~~~~~it~~Df~~Al~kV~~ 452 (467)
T 4b4t_H 432 RARRKVATEKDFLKAVDKVIS 452 (467)
T ss_dssp HHTCSSBCHHHHHHHHHHHHH
T ss_pred HcCCCccCHHHHHHHHHHHhc
Confidence 999999999999999999874
No 6
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-49 Score=436.58 Aligned_cols=245 Identities=35% Similarity=0.588 Sum_probs=230.0
Q ss_pred ccCCCccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCcccc
Q 005285 163 VSDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (704)
Q Consensus 163 ~~~~~~~f~dVvG~~~~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~ 241 (704)
.+.++++|+||+|.+++|++|++.+.+ +++|..|...|+++|+|||||||||||||++|+|+|+++|++|+.++++++.
T Consensus 173 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~ 252 (437)
T 4b4t_L 173 FEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIV 252 (437)
T ss_dssp EESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTC
T ss_pred ccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhc
Confidence 467899999999999999999999987 9999999999999999999999999999999999999999999999999999
Q ss_pred ch-hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCC----CChhHHHHHHHHHHHhcCCcccCCccccccCccEEE
Q 005285 242 DS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR----KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (704)
Q Consensus 242 ~~-~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~----~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (704)
++ .+.+...++.+|..|+.++||||||||+|++++++.. .+.+...++++||.+||++.... +|+|
T Consensus 253 sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~---------~viv 323 (437)
T 4b4t_L 253 DKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG---------QTKI 323 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTT---------SSEE
T ss_pred cccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCC---------CeEE
Confidence 98 5888999999999999999999999999999877632 23456788999999999976543 4899
Q ss_pred EEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 005285 317 ICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSV 396 (704)
Q Consensus 317 IaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~ 396 (704)
|+|||+|+.|||||+||||||++|+|++||.++|.+||+.|+++.++..++|+..||..|.||||+||+++|++|++.|+
T Consensus 324 I~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~ai 403 (437)
T 4b4t_L 324 IMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAI 403 (437)
T ss_dssp EEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHH
T ss_pred EEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCcccHHHHHHHHHHHH
Q 005285 397 RKGHSKIQQQDIVDVLDKQL 416 (704)
Q Consensus 397 r~~~~~It~~dl~~Al~~~~ 416 (704)
++++..|+.+||.+|++++.
T Consensus 404 r~~~~~i~~~d~~~Al~~v~ 423 (437)
T 4b4t_L 404 RDDRDHINPDDLMKAVRKVA 423 (437)
T ss_dssp HTTCSSBCHHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999875
No 7
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-49 Score=435.96 Aligned_cols=245 Identities=31% Similarity=0.526 Sum_probs=228.4
Q ss_pred ccCCCccccceecCcccHHHHHHHHH-HhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCcccc
Q 005285 163 VSDTKSMYKEVVLGGDVWDLLDELMI-YMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (704)
Q Consensus 163 ~~~~~~~f~dVvG~~~~k~~L~elv~-~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~ 241 (704)
++.++++|+||+|.+++|+.|++.+. ++++|..|...|+++|+|||||||||||||++|+|+|++++.+|+.++++++.
T Consensus 173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhh
Confidence 46789999999999999999998765 59999999999999999999999999999999999999999999999999999
Q ss_pred ch-hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCC----CChhHHHHHHHHHHHhcCCcccCCccccccCccEEE
Q 005285 242 DS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR----KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (704)
Q Consensus 242 ~~-~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~----~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (704)
.+ .|.+...++.+|..|+..+||||||||+|++++++.. ++.+...++++||.+||++.... +|+|
T Consensus 253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~---------~ViV 323 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDD---------RVKV 323 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSC---------SSEE
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCC---------CEEE
Confidence 98 5888999999999999999999999999999887643 23456778999999999976543 4899
Q ss_pred EEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 005285 317 ICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSV 396 (704)
Q Consensus 317 IaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~ 396 (704)
|+|||+|+.|||||+||||||++|+|++||.++|.+||+.|+++.++..++|+..||..|.||||+||+++|++|++.|+
T Consensus 324 IaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~ 403 (434)
T 4b4t_M 324 LAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIAL 403 (434)
T ss_dssp EEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHH
T ss_pred EEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCcccHHHHHHHHHHHH
Q 005285 397 RKGHSKIQQQDIVDVLDKQL 416 (704)
Q Consensus 397 r~~~~~It~~dl~~Al~~~~ 416 (704)
+++...|+++||.+|++++.
T Consensus 404 r~~~~~i~~~Df~~Al~~v~ 423 (434)
T 4b4t_M 404 RNGQSSVKHEDFVEGISEVQ 423 (434)
T ss_dssp HHTCSSBCHHHHHHHHHSCS
T ss_pred HcCCCCcCHHHHHHHHHHHh
Confidence 99999999999999998753
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-48 Score=429.65 Aligned_cols=245 Identities=32% Similarity=0.521 Sum_probs=229.2
Q ss_pred ccCCCccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCcccc
Q 005285 163 VSDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (704)
Q Consensus 163 ~~~~~~~f~dVvG~~~~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~ 241 (704)
.+.++++|+||+|.+++|+.|++.+.+ +++|..|...|+++|+|+|||||||||||++|+|+|++++++|+.++++++.
T Consensus 164 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~ 243 (428)
T 4b4t_K 164 NEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFV 243 (428)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTC
T ss_pred CCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhh
Confidence 467899999999999999999998875 9999999999999999999999999999999999999999999999999999
Q ss_pred ch-hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCC----CCChhHHHHHHHHHHHhcCCcccCCccccccCccEEE
Q 005285 242 DS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHA----RKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (704)
Q Consensus 242 ~~-~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~----~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (704)
++ .|.+...++.+|..|+..+||||||||+|++++++. +++.+..+++++||.+||++.... +|+|
T Consensus 244 ~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~---------~v~v 314 (428)
T 4b4t_K 244 HKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQST---------NVKV 314 (428)
T ss_dssp CSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSC---------SEEE
T ss_pred ccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCC---------CEEE
Confidence 88 588899999999999999999999999999997763 234566789999999999976544 4999
Q ss_pred EEEcCCCCCCcccccCCCccceeeeeC-CCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 005285 317 ICATNRPDELDLEFVRPGRIDRRLYIG-LPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMS 395 (704)
Q Consensus 317 IaaTN~p~~LD~aLlRpgRfd~~I~v~-~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A 395 (704)
|+|||+|+.|||||+||||||++|+|| +|+.++|.+||+.|+++.++..++|+..||..|.||||+||+++|++|++.|
T Consensus 315 I~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a 394 (428)
T 4b4t_K 315 IMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRA 394 (428)
T ss_dssp EEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred EEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999996 8999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCcccHHHHHHHHHHHH
Q 005285 396 VRKGHSKIQQQDIVDVLDKQL 416 (704)
Q Consensus 396 ~r~~~~~It~~dl~~Al~~~~ 416 (704)
+++++..|+++||.+|+.+++
T Consensus 395 ~r~~~~~i~~~d~~~A~~~~~ 415 (428)
T 4b4t_K 395 VRKNRYVILQSDLEEAYATQV 415 (428)
T ss_dssp HHTTCSSBCHHHHHHHHHHHS
T ss_pred HHCCCCCCCHHHHHHHHHHhh
Confidence 999999999999999998764
No 9
>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1
Probab=100.00 E-value=3.7e-48 Score=394.36 Aligned_cols=207 Identities=27% Similarity=0.341 Sum_probs=156.8
Q ss_pred hhccchhhHHHHHHHHHHHHHHHHHhhcCCCcccceeeeccCCceeeEEEecccccccccccccHHHHHHHHHHHhhhhH
Q 005285 431 KCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRC 510 (704)
Q Consensus 431 ~~~~~~~~~~k~~~A~HEaGhalva~~~p~~~~~~~~~i~p~~~~~~~t~~~p~e~~~~~~~~t~~~l~~~i~v~LgGRa 510 (704)
+++..+++++|+++|||||||||||+++|+.+|+++++|+|||+++|+|+++|.+|+ .++||++|+++|+|+|||||
T Consensus 6 kk~~~~s~~ek~~vAyHEAGHAlva~~l~~~~pV~KVTIiPRG~alG~t~~~P~ed~---~~~tk~~l~~~i~v~LgGRa 82 (238)
T 2di4_A 6 GSHMTISPKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIPRGMALGVTQQLPIEDK---HIYDKKDLYNKILVLLGGRA 82 (238)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHHHHCSSCCCCCCEECC----------------C---CCCBHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEeecCCcceEEEeCCcccc---cccCHHHHHHHHHHHHhHHH
Confidence 445688999999999999999999999999999999999999999999999999875 35699999999999999999
Q ss_pred HHHhHcC-CCCCCCCchhHHHHHHHHHHHHhcccccccCcccccccccccCCCCCCCCccccccCCCCCCCCCCCCHHHH
Q 005285 511 AERLVFG-DDVTDGGKDDLEKITKIAREMVISPQNARLGLAGLTRRVGLLDRPDSSDGDLIKYRWDDPQVIPTDMTLELS 589 (704)
Q Consensus 511 AEelvfG-~~vttGas~DL~~AT~iA~~MV~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~a 589 (704)
||+|+|| +++||||+|||++||+||+.||++| |||+++|++.+..... .|++ ++. ..++||++|+
T Consensus 83 AEelifG~g~vttGA~~Dl~~AT~iAr~MV~~~--------GMs~~lG~v~~~~~~~-~flg-~~~----~~~~~Se~ta 148 (238)
T 2di4_A 83 AEEVFFGKDGITTGAENDLQRATDLAYRMVSMW--------GMSDKVGPIAIRRVAN-PFLG-GMT----TAVDTSPDLL 148 (238)
T ss_dssp HHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHTS--------CCCTTTCSCCCCC----------------CCCSCCHHHH
T ss_pred HHHHHhCCCCcccChHhHHHHHHHHHHHHHHHh--------CCCCCCCceeecCCcc-cccc-ccc----cccccCHHHH
Confidence 9999994 2599999999999999999999994 4555566666554333 4555 331 2478999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhcccCHHHHHHHHcCCCCCCcccccccc
Q 005285 590 ELFTRELTRYIEETEELAMNGLRDNKHILEIIAKELLENSRITGLEVEEKLQGLSPVMFEDFVKPF 655 (704)
Q Consensus 590 ~~iD~Ev~~il~~ay~~A~~lL~~nr~~L~~lA~~LlekEtL~g~ei~~il~~~~~~~~~~~~~~~ 655 (704)
+.||+||++||++||++|++||++||+.|++||++|+++|||+++||.+|++.. +..++|..+..
T Consensus 149 ~~iD~Ev~~il~~ay~~a~~iL~~nr~~L~~lA~~Lle~EtL~~~ei~~il~~~-~~~~~~~~~~~ 213 (238)
T 2di4_A 149 REIDEEVKRIITEQYEKAKAIVEEYKEPLKAVVKKLLEKETITCEEFVEVFKLY-GIELKDKCKKE 213 (238)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHHHH-TCCCCCCCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHHccC-CCCchhHHHhH
Confidence 999999999999999999999999999999999999999999999999999865 34445555543
No 10
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2.1e-43 Score=415.36 Aligned_cols=227 Identities=34% Similarity=0.566 Sum_probs=182.5
Q ss_pred ccCCCccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCcccc
Q 005285 163 VSDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (704)
Q Consensus 163 ~~~~~~~f~dVvG~~~~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~ 241 (704)
...++++|+||.|.+++|+.|++.+.+ +++|..|.+.|.++|+|+|||||||||||++|+|+|.+++.+|+.++++++.
T Consensus 469 ~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~ 548 (806)
T 3cf2_A 469 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 548 (806)
T ss_dssp CBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhh
Confidence 356789999999999999999999987 7899999999999999999999999999999999999999999999999999
Q ss_pred ch-hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCC----CChhHHHHHHHHHHHhcCCcccCCccccccCccEEE
Q 005285 242 DS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR----KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (704)
Q Consensus 242 ~~-~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~----~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (704)
++ .+.+++.++.+|..|++.+||||||||||+++++|+. ++...++++++||.+||++.... +|+|
T Consensus 549 s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~---------~V~v 619 (806)
T 3cf2_A 549 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK---------NVFI 619 (806)
T ss_dssp TTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSS---------SEEE
T ss_pred ccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCC---------CEEE
Confidence 98 5788999999999999999999999999999877642 23345678999999999976543 4999
Q ss_pred EEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 005285 317 ICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSV 396 (704)
Q Consensus 317 IaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~ 396 (704)
|+|||+|+.||+|++||||||++|+|++||.++|.+||+.|+++.++..++|+..||+.|.||||+||+++|++|++.|+
T Consensus 620 i~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~ 699 (806)
T 3cf2_A 620 IGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAI 699 (806)
T ss_dssp ECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHH
T ss_pred EEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hh
Q 005285 397 RK 398 (704)
Q Consensus 397 r~ 398 (704)
++
T Consensus 700 r~ 701 (806)
T 3cf2_A 700 RE 701 (806)
T ss_dssp HH
T ss_pred HH
Confidence 86
No 11
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=3.7e-41 Score=396.25 Aligned_cols=243 Identities=34% Similarity=0.573 Sum_probs=222.0
Q ss_pred cCCCccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccc
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~ 242 (704)
..+.++|+||.|.+++++.|++++.+ +++|..|..+|+++|+|||||||||||||+|||++|+++|.+|+.++++++.+
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred cCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhc
Confidence 35679999999999999999999987 99999999999999999999999999999999999999999999999999998
Q ss_pred h-hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCC-CChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEc
Q 005285 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR-KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (704)
Q Consensus 243 ~-~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~-~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (704)
. .+.++..++.+|+.|+.++||||||||||+|++++.+ .++....++++|+.+||++.... +|+||+||
T Consensus 277 k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~---------~V~VIaaT 347 (806)
T 3cf2_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA---------HVIVMAAT 347 (806)
T ss_dssp SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGG---------CEEEEEEC
T ss_pred ccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccC---------CEEEEEec
Confidence 8 6888999999999999999999999999999987654 34455778999999999976543 49999999
Q ss_pred CCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCC
Q 005285 321 NRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGH 400 (704)
Q Consensus 321 N~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r~~~ 400 (704)
|+++.||++|+||||||++|+++.||.++|.+||+.|+++..+..++|+..||..|.||+|+||.++|++|++.|.++..
T Consensus 348 N~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~ 427 (806)
T 3cf2_A 348 NRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKM 427 (806)
T ss_dssp SSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987632
Q ss_pred -----------------CcccHHHHHHHHHHH
Q 005285 401 -----------------SKIQQQDIVDVLDKQ 415 (704)
Q Consensus 401 -----------------~~It~~dl~~Al~~~ 415 (704)
..|+.+|+..|+...
T Consensus 428 ~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~ 459 (806)
T 3cf2_A 428 DLIDLEDETIDAEVMNSLAVTMDDFRWALSQS 459 (806)
T ss_dssp HHGGGTCCCCSHHHHHHCEECTTHHHHHHSSS
T ss_pred ccccccccccchhhhccceeeHHHHHHHHHhC
Confidence 236777888887654
No 12
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=8.5e-37 Score=315.57 Aligned_cols=244 Identities=36% Similarity=0.649 Sum_probs=217.5
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccch
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS 243 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~ 243 (704)
+.++.+|+||+|.+++++.+.+++.++.++..|...|...|+++||+||||||||++|+++|++++.|++.++++++...
T Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~ 84 (257)
T 1lv7_A 5 DQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 84 (257)
T ss_dssp CSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTS
T ss_pred cCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHH
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred -hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCC----CCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEE
Q 005285 244 -EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHA----RKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFIC 318 (704)
Q Consensus 244 -~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~----~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIa 318 (704)
.+.+...++.+|+.+....|+++||||+|.+..++. ++..+....+++++..+++.... .+++||+
T Consensus 85 ~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~---------~~~~vI~ 155 (257)
T 1lv7_A 85 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN---------EGIIVIA 155 (257)
T ss_dssp CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS---------SCEEEEE
T ss_pred hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC---------CCEEEEE
Confidence 456677899999999998999999999999986543 23445567899999999986533 3489999
Q ss_pred EcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 005285 319 ATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRK 398 (704)
Q Consensus 319 aTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r~ 398 (704)
|||+++.+|++++|||||++.+.++.|+.++|.+|++.+++..++..++++..++..++||+++||.++|++|+..|.++
T Consensus 156 ~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~ 235 (257)
T 1lv7_A 156 ATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG 235 (257)
T ss_dssp EESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred eeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998888888889999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHH
Q 005285 399 GHSKIQQQDIVDVLDKQL 416 (704)
Q Consensus 399 ~~~~It~~dl~~Al~~~~ 416 (704)
+...|+.+|+..|++++.
T Consensus 236 ~~~~i~~~~~~~a~~~~~ 253 (257)
T 1lv7_A 236 NKRVVSMVEFEKAKDKIM 253 (257)
T ss_dssp TCSSBCHHHHHHHHHHHT
T ss_pred CCCcccHHHHHHHHHHHh
Confidence 999999999999999865
No 13
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=4.7e-37 Score=322.17 Aligned_cols=243 Identities=31% Similarity=0.552 Sum_probs=200.9
Q ss_pred cCCCccccceecCcccHHHHHHH-HHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccc
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDEL-MIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~el-v~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~ 242 (704)
+.++++|+||+|.+++|+.|++. +..+.++..|...+...|+|++|+||||||||+|++++|++++.+++.+++.++..
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 34678999999999999999984 56789999999999999999999999999999999999999999999999999877
Q ss_pred h-hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCC-ChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEc
Q 005285 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK-DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (704)
Q Consensus 243 ~-~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~-~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (704)
. .+.....++.+|+.++...|||+|+||+|.++..+... .......+++++.+|++..... .++++++|
T Consensus 83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~---------~~i~ia~t 153 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQ---------QVFIMAAT 153 (274)
T ss_dssp STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTT---------CEEEEEEE
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccC---------CEEEEeec
Confidence 6 46667789999999998999999999999987543221 1122356799999999875443 38999999
Q ss_pred CCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcC---CCccccccHHHHHHhc--cCCCHHHHHHHHHHHHHHH
Q 005285 321 NRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAG---KQLAEDVNFEELVFRT--VGFSGADIRNLVNESGIMS 395 (704)
Q Consensus 321 N~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~---~~l~~dvdl~~La~~t--~G~sgadL~~Lv~eA~~~A 395 (704)
|+|+.||++++||||||+.|++++|+.++|.+||+.++++ .++..++|+..+|..+ .||||+||.++|++|++.|
T Consensus 154 n~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a 233 (274)
T 2x8a_A 154 NRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICA 233 (274)
T ss_dssp SCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHH
T ss_pred CChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999854 3456789999999875 5999999999999999999
Q ss_pred HHhC-----------CCcccHHHHHHHHHHH
Q 005285 396 VRKG-----------HSKIQQQDIVDVLDKQ 415 (704)
Q Consensus 396 ~r~~-----------~~~It~~dl~~Al~~~ 415 (704)
.++. ...|+++|+.+|+.++
T Consensus 234 ~~~~~~~~~~~~~~~~~~i~~~df~~al~~~ 264 (274)
T 2x8a_A 234 LRQEMARQKSGNEKGELKVSHKHFEEAFKKV 264 (274)
T ss_dssp HHHHC-----------CCBCHHHHHHHHTTC
T ss_pred HHHHHhhccccccccCCeecHHHHHHHHHHh
Confidence 8752 2369999999998864
No 14
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=2.4e-36 Score=320.58 Aligned_cols=242 Identities=32% Similarity=0.543 Sum_probs=212.6
Q ss_pred cCCCccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccc
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~ 242 (704)
+.+.++|+||+|.+++++.|++.+.+ ++.|..|...|..+++++||+||||||||++|+++|++++.+|+.++|+++..
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~ 87 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 87 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHh
Confidence 56789999999999999999999876 88999999999999999999999999999999999999999999999999877
Q ss_pred h-hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCC----ChhHHHHHHHHHHHhcCCcccCCccccccCccEEEE
Q 005285 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK----DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (704)
Q Consensus 243 ~-~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~----~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (704)
. .+.....++.+|..|+...||||||||+|.+...+... .......+++|+..|++.... .+|+||
T Consensus 88 ~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~---------~~v~vi 158 (301)
T 3cf0_A 88 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK---------KNVFII 158 (301)
T ss_dssp HHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTT---------SSEEEE
T ss_pred hhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCC---------CCEEEE
Confidence 6 45666779999999999999999999999997654221 123345788999999976432 349999
Q ss_pred EEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 005285 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVR 397 (704)
Q Consensus 318 aaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r 397 (704)
+|||+++.||++++|||||++.++++.|+.++|.+||+.+++...+..++++..++..+.||+|+||.++|++|++.|.+
T Consensus 159 ~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~ 238 (301)
T 3cf0_A 159 GATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIR 238 (301)
T ss_dssp EEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred EecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988887889999999999999999999999999998876
Q ss_pred hCC-------------------------CcccHHHHHHHHHH
Q 005285 398 KGH-------------------------SKIQQQDIVDVLDK 414 (704)
Q Consensus 398 ~~~-------------------------~~It~~dl~~Al~~ 414 (704)
+.. ..|+.+|+..|+.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~ 280 (301)
T 3cf0_A 239 ESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRF 280 (301)
T ss_dssp HHHHHHC--------------------CCCBCHHHHHHHHTT
T ss_pred HHHHhhhhhhhhcccccccccccccccCCccCHHHHHHHHHH
Confidence 421 25788888888865
No 15
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=100.00 E-value=6.7e-36 Score=308.07 Aligned_cols=243 Identities=34% Similarity=0.609 Sum_probs=194.5
Q ss_pred CCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccch-h
Q 005285 166 TKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-E 244 (704)
Q Consensus 166 ~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~-~ 244 (704)
++++|+||+|.+++++.|++++.+++.|..|...|...|+++||+||||||||++|+++|++++.+++.++++++... .
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 357899999999999999999999999999999999999999999999999999999999999999999999998876 4
Q ss_pred hhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCC-----ChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEE
Q 005285 245 KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK-----DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICA 319 (704)
Q Consensus 245 ~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~-----~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaa 319 (704)
+.+...++.+|..+....|+||||||+|.+..++... +.+....++.++..+++.... .+++||+|
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~---------~~~~vi~~ 151 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTT---------DHVIVLAS 151 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTT---------CCEEEEEE
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCC---------CCEEEEec
Confidence 5667788999999999999999999999997654321 234456789999999875432 35899999
Q ss_pred cCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccc--cHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 005285 320 TNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDV--NFEELVFRTVGFSGADIRNLVNESGIMSVR 397 (704)
Q Consensus 320 TN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dv--dl~~La~~t~G~sgadL~~Lv~eA~~~A~r 397 (704)
||.++.+|++++|||||++.++++.|+.++|.+|++.++....+..+. .+..++..+.|++++||.+++++|+..|.+
T Consensus 152 tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~ 231 (262)
T 2qz4_A 152 TNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAR 231 (262)
T ss_dssp ESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC---
T ss_pred CCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998776655443 347899999999999999999999999999
Q ss_pred hCCCcccHHHHHHHHHHHHH
Q 005285 398 KGHSKIQQQDIVDVLDKQLL 417 (704)
Q Consensus 398 ~~~~~It~~dl~~Al~~~~~ 417 (704)
++...|+.+|+..|+.++..
T Consensus 232 ~~~~~i~~~d~~~a~~~~~~ 251 (262)
T 2qz4_A 232 EGHTSVHTLNFEYAVERVLA 251 (262)
T ss_dssp -----CCBCCHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHhcc
Confidence 88899999999999998753
No 16
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1e-34 Score=303.77 Aligned_cols=244 Identities=34% Similarity=0.582 Sum_probs=221.1
Q ss_pred cCCCccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccc
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~ 242 (704)
..++.+|++++|.+++++.|.+.+.. +..+..|...|...++++||+||||||||++|+++|++++.+++.++++++..
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 89 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK 89 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHH
Confidence 56778999999999999999888765 88999999999999999999999999999999999999999999999999887
Q ss_pred h-hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCC----CChhHHHHHHHHHHHhcCCcccCCccccccCccEEEE
Q 005285 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR----KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (704)
Q Consensus 243 ~-~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~----~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (704)
. .+.....++.+|..++...|+||||||+|.+..++.. .+.+....+..++..+++.... .+++||
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~---------~~~~vI 160 (285)
T 3h4m_A 90 KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR---------GDVKII 160 (285)
T ss_dssp CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS---------SSEEEE
T ss_pred hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC---------CCEEEE
Confidence 7 5667778999999999999999999999999866533 2345567888899998875443 348999
Q ss_pred EEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 005285 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVR 397 (704)
Q Consensus 318 aaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r 397 (704)
+|||.++.+|++++|++||++.+.++.|+.++|.+||+.++....+..++++..++..+.|++++||.++|++|...|.+
T Consensus 161 ~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~ 240 (285)
T 3h4m_A 161 GATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIR 240 (285)
T ss_dssp EECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888888888999999999999999999999999999999
Q ss_pred hCCCcccHHHHHHHHHHHH
Q 005285 398 KGHSKIQQQDIVDVLDKQL 416 (704)
Q Consensus 398 ~~~~~It~~dl~~Al~~~~ 416 (704)
++...|+.+|+.+|+.++.
T Consensus 241 ~~~~~I~~~d~~~al~~~~ 259 (285)
T 3h4m_A 241 ELRDYVTMDDFRKAVEKIM 259 (285)
T ss_dssp TTCSSBCHHHHHHHHHHHH
T ss_pred hccCcCCHHHHHHHHHHHH
Confidence 9999999999999999875
No 17
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=100.00 E-value=1.1e-34 Score=299.09 Aligned_cols=240 Identities=41% Similarity=0.732 Sum_probs=213.9
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccch
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS 243 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~ 243 (704)
..++.+|+|++|.++++..++++..++.++..+...+...|+|++|+||||||||++++++|+.++.+++.+++.++...
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~ 88 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 88 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHH
Confidence 56789999999999999999999999988889999999999999999999999999999999999999999999887665
Q ss_pred -hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCC----CChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEE
Q 005285 244 -EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR----KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFIC 318 (704)
Q Consensus 244 -~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~----~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIa 318 (704)
.+.....++.+|+.+....|+++||||+|.++.++.. ...+....+++++.+|++..... .+++++
T Consensus 89 ~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~---------~~i~~a 159 (254)
T 1ixz_A 89 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT---------AIVVMA 159 (254)
T ss_dssp CTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTC---------CEEEEE
T ss_pred HhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCC---------CEEEEE
Confidence 4555667889999998888999999999999765432 34556778899999999865432 389999
Q ss_pred EcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 005285 319 ATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRK 398 (704)
Q Consensus 319 aTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r~ 398 (704)
+||+|+.||++++|+|||++.++++.|+.++|.+||+.++++..+..++++..++..+.|++|+||.++|++|+..|.++
T Consensus 160 ~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~ 239 (254)
T 1ixz_A 160 ATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE 239 (254)
T ss_dssp EESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred ccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998888888899999999999999999999999999999998
Q ss_pred CCCcccHHHHHHHH
Q 005285 399 GHSKIQQQDIVDVL 412 (704)
Q Consensus 399 ~~~~It~~dl~~Al 412 (704)
+...|+.+|+.+|+
T Consensus 240 ~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 240 GRRKITMKDLEEAA 253 (254)
T ss_dssp TCSSBCHHHHHHHT
T ss_pred cCCCcCHHHHHHHh
Confidence 88899999998875
No 18
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=9.5e-35 Score=311.42 Aligned_cols=224 Identities=29% Similarity=0.500 Sum_probs=196.6
Q ss_pred cCCCccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc-CCCEEEEeCcccc
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-GLPFVFASGAEFT 241 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~-g~~~v~is~s~~~ 241 (704)
+.++++|+||+|.+++|+.|++.+.+ ++.|..|.. +..+|+++|||||||||||++|+++|+++ +.+|+.++++++.
T Consensus 5 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 5 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 83 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSC
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHH
Confidence 46789999999999999999998865 777777663 46678999999999999999999999999 8999999999998
Q ss_pred ch-hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCC-ChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEE
Q 005285 242 DS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK-DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICA 319 (704)
Q Consensus 242 ~~-~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~-~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaa 319 (704)
.. .+.....++.+|..++..+||||||||+|++.+++... .......+++|+..|++.... ..+++||+|
T Consensus 84 ~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~--------~~~v~vI~a 155 (322)
T 1xwi_A 84 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD--------NDGILVLGA 155 (322)
T ss_dssp CSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSC--------CTTEEEEEE
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccccc--------CCCEEEEEe
Confidence 87 46677889999999999999999999999998765433 344567889999999986432 235999999
Q ss_pred cCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 005285 320 TNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSVRK 398 (704)
Q Consensus 320 TN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r~ 398 (704)
||+++.+|++++| ||++.+++++|+.++|.+||+.++...+.. .+.++..|+..|.||||+||.++|++|++.|.++
T Consensus 156 tn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~ 233 (322)
T 1xwi_A 156 TNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRK 233 (322)
T ss_dssp ESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHH
T ss_pred cCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999999877653 5778999999999999999999999999998875
No 19
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=9.5e-35 Score=310.99 Aligned_cols=226 Identities=28% Similarity=0.490 Sum_probs=194.4
Q ss_pred ccCCCccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCcccc
Q 005285 163 VSDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (704)
Q Consensus 163 ~~~~~~~f~dVvG~~~~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~ 241 (704)
.+.++++|+||+|.+++++.|++.+.+ ++.|..|.. +..+++++|||||||||||++|+++|++++.+|+.++++++.
T Consensus 10 ~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~ 88 (322)
T 3eie_A 10 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 88 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHH
T ss_pred ecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHh
Confidence 357789999999999999999998765 556655554 667889999999999999999999999999999999999988
Q ss_pred ch-hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCC-CChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEE
Q 005285 242 DS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR-KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICA 319 (704)
Q Consensus 242 ~~-~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~-~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaa 319 (704)
.. .+.....++.+|..++...|+||||||||.+..++.. .........++++..|++.... ..+++||+|
T Consensus 89 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~--------~~~v~vi~a 160 (322)
T 3eie_A 89 SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND--------SQGVLVLGA 160 (322)
T ss_dssp TTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTS--------CCCEEEEEE
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccccc--------CCceEEEEe
Confidence 77 5677888999999999999999999999999865432 2334466789999999986422 235999999
Q ss_pred cCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 005285 320 TNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSVRK 398 (704)
Q Consensus 320 TN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r~ 398 (704)
||+++.||++++| ||+..++++.|+.++|.+||+.++...... .+.++..|+..+.||+|+||.++|++|++.|.++
T Consensus 161 tn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~ 238 (322)
T 3eie_A 161 TNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 238 (322)
T ss_dssp ESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHH
T ss_pred cCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999999877643 5678999999999999999999999999999886
Q ss_pred C
Q 005285 399 G 399 (704)
Q Consensus 399 ~ 399 (704)
.
T Consensus 239 ~ 239 (322)
T 3eie_A 239 I 239 (322)
T ss_dssp H
T ss_pred H
Confidence 3
No 20
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=6.3e-34 Score=320.94 Aligned_cols=227 Identities=35% Similarity=0.607 Sum_probs=206.1
Q ss_pred CCccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccch-
Q 005285 166 TKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS- 243 (704)
Q Consensus 166 ~~~~f~dVvG~~~~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~- 243 (704)
...+|++|+|.+.+++.|.+.+.. +++|..|..+|+..|+++||+||||||||++|+++|++++.+|+.++|+++...
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 457899999999999999998876 899999999999999999999999999999999999999999999999999877
Q ss_pred hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCC-ChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCC
Q 005285 244 EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK-DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNR 322 (704)
Q Consensus 244 ~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~-~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~ 322 (704)
.+.....++.+|..|....||||||||||.+.+++... .+.....+++|+..|++.... .+++||+|||+
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~---------~~v~vIaaTn~ 349 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR---------AHVIVMAATNR 349 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTT---------SCEEEEEEESC
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccC---------CceEEEEecCC
Confidence 56677789999999999999999999999998765433 444567889999999976443 34999999999
Q ss_pred CCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCC
Q 005285 323 PDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHS 401 (704)
Q Consensus 323 p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r~~~~ 401 (704)
++.||++++|+|||++.++++.|+.++|.+||+.+++...+..++++..++..+.||+++||.+||++|++.|.++...
T Consensus 350 ~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~ 428 (489)
T 3hu3_A 350 PNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428 (489)
T ss_dssp GGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTT
T ss_pred ccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999888888899999999999999999999999999999988654
No 21
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=100.00 E-value=1.3e-33 Score=295.56 Aligned_cols=254 Identities=40% Similarity=0.707 Sum_probs=216.3
Q ss_pred hhhhhhhhcccccCCCcccCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHH
Q 005285 146 QLFDMAYAENFILPVGYVSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLA 225 (704)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA 225 (704)
..+.+.+++..+.. ..++.+|+|++|.+++++.+++++..+.++..+...+...|+|++|+||||||||+|++++|
T Consensus 19 ~~~~~~~~~~~~~~----~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~ 94 (278)
T 1iy2_A 19 SAFSFTKSRARVLT----EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVA 94 (278)
T ss_dssp -------CCCCCBC----CCCCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHH
T ss_pred Cccccccccccccc----CCCCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHH
Confidence 34555555543332 34789999999999999999999999999989999999999999999999999999999999
Q ss_pred HHcCCCEEEEeCccccch-hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCC----CChhHHHHHHHHHHHhcCCc
Q 005285 226 KESGLPFVFASGAEFTDS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR----KDPRRRATFEALIAQLDGDK 300 (704)
Q Consensus 226 ~e~g~~~v~is~s~~~~~-~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~----~~~e~~~~ln~LL~~ld~~~ 300 (704)
+.++.+++.+++.++... .+.....++.+|+.+....|+++|+||+|.++..+.. ...+....+++++.+|++..
T Consensus 95 ~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~ 174 (278)
T 1iy2_A 95 GEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 174 (278)
T ss_dssp HHTTCCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCC
T ss_pred HHcCCCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCC
Confidence 999999999999887665 3455667889999998888999999999999755422 24556778899999999865
Q ss_pred ccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCC
Q 005285 301 ERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFS 380 (704)
Q Consensus 301 ~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~s 380 (704)
... .++++++||+|+.||++++|++||++.|+++.|+.++|.+||+.+++...+..++++..++..++|++
T Consensus 175 ~~~---------~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~ 245 (278)
T 1iy2_A 175 KDT---------AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFV 245 (278)
T ss_dssp TTC---------CEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCC
T ss_pred CCC---------CEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCC
Confidence 432 38999999999999999999999999999999999999999999998888888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 005285 381 GADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (704)
Q Consensus 381 gadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al 412 (704)
|+||.++|++|+..|.+++...|+.+|+.+|+
T Consensus 246 ~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 246 GADLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 99999999999999999888899999998875
No 22
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=2e-33 Score=305.15 Aligned_cols=224 Identities=28% Similarity=0.501 Sum_probs=189.3
Q ss_pred cCCCccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccc
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~ 242 (704)
..++++|+||+|.+++++.|.+.+.+ ++.|..|.. +..+++++||+||||||||++|+++|++++.+|+.++++++..
T Consensus 44 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~ 122 (355)
T 2qp9_X 44 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 122 (355)
T ss_dssp ---CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHS
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhh
Confidence 56789999999999999999988765 677777765 6678899999999999999999999999999999999999877
Q ss_pred h-hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCC-CChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEc
Q 005285 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR-KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (704)
Q Consensus 243 ~-~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~-~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (704)
. .+.....++.+|..++...|+||||||+|.+...+.. ........+++|+..|++.... ..+|+||+||
T Consensus 123 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~--------~~~v~vI~at 194 (355)
T 2qp9_X 123 KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND--------SQGVLVLGAT 194 (355)
T ss_dssp CC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC-----------CCEEEEEEE
T ss_pred hhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccccc--------CCCeEEEeec
Confidence 7 4666778999999999999999999999999865432 3334466789999999976432 2359999999
Q ss_pred CCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 005285 321 NRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSVRK 398 (704)
Q Consensus 321 N~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r~ 398 (704)
|+++.||++++| ||++.+++++|+.++|.+||+.++...+.. .+.++..|+..|.||+|+||.++|++|++.|.++
T Consensus 195 n~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~ 271 (355)
T 2qp9_X 195 NIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 271 (355)
T ss_dssp SCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999 999999999999999999999999877643 5778999999999999999999999999999876
No 23
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=100.00 E-value=9.9e-36 Score=308.99 Aligned_cols=244 Identities=35% Similarity=0.657 Sum_probs=212.1
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccch
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS 243 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~ 243 (704)
+.++.+|+|++|.+++++.|.+++.++..|..|...|...|+++||+||||||||++|+++|++++.+++.++++++...
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 83 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM 83 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTS
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred -hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCC-----CChhHHHHHHHHHHHhcCCcccCCccccccCccEEEE
Q 005285 244 -EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR-----KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (704)
Q Consensus 244 -~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~-----~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (704)
.+.+...++.+|..+....|+||||||+|.+..++.. .+....+.+++|+..+++.... ..+++||
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~--------~~~v~vi 155 (268)
T 2r62_A 84 FVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSE--------NAPVIVL 155 (268)
T ss_dssp CSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCS--------CSCCEEE
T ss_pred hcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccC--------CCCEEEE
Confidence 3555566788999999999999999999999765321 1222334567888888765422 2348999
Q ss_pred EEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 005285 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVR 397 (704)
Q Consensus 318 aaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r 397 (704)
+|||.++.+|++++|+|||+..++++.|+.++|.+||+.+++...+..++++..++..+.|++|+||.++|++|+..|.+
T Consensus 156 ~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~ 235 (268)
T 2r62_A 156 AATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGR 235 (268)
T ss_dssp ECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSS
T ss_pred EecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888777788899999999999999999999999999988
Q ss_pred hCCCcccHHHHHHHHHHH
Q 005285 398 KGHSKIQQQDIVDVLDKQ 415 (704)
Q Consensus 398 ~~~~~It~~dl~~Al~~~ 415 (704)
++...|+.+|+.+|+.+.
T Consensus 236 ~~~~~i~~~~~~~a~~~~ 253 (268)
T 2r62_A 236 NNQKEVRQQHLKEAVERG 253 (268)
T ss_dssp SCCCSCCHHHHHTSCTTC
T ss_pred hccCCcCHHHHHHHHHHH
Confidence 888899999998887654
No 24
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=3.4e-32 Score=303.91 Aligned_cols=224 Identities=30% Similarity=0.507 Sum_probs=188.1
Q ss_pred cCCCccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc-CCCEEEEeCcccc
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-GLPFVFASGAEFT 241 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~-g~~~v~is~s~~~ 241 (704)
..++++|+||+|.+++++.|.+.+.+ ++.|..|.. +..+++++||+||||||||++|+++|.++ +.+|+.++++++.
T Consensus 127 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~ 205 (444)
T 2zan_A 127 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 205 (444)
T ss_dssp CCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHH
Confidence 56789999999999999999987754 667766653 35678999999999999999999999999 8999999999988
Q ss_pred ch-hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCC-CChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEE
Q 005285 242 DS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR-KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICA 319 (704)
Q Consensus 242 ~~-~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~-~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaa 319 (704)
.. .+.....++.+|..++...|+||||||||.+.+++.. ........+++|+..|++.... ..+|+||+|
T Consensus 206 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~--------~~~v~vI~a 277 (444)
T 2zan_A 206 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD--------NDGILVLGA 277 (444)
T ss_dssp ------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCC--------CSSCEEEEE
T ss_pred hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccC--------CCCEEEEec
Confidence 77 4556677999999999999999999999999765543 3344567889999999986431 235899999
Q ss_pred cCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 005285 320 TNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSVRK 398 (704)
Q Consensus 320 TN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r~ 398 (704)
||+++.||++++| ||++.+++++|+.++|.+||+.++...+.. .+.++..|+..|.||||+||.++|++|++.|+++
T Consensus 278 tn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~ 355 (444)
T 2zan_A 278 TNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRK 355 (444)
T ss_dssp ESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHH
T ss_pred CCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999999876653 5678999999999999999999999999988875
No 25
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.97 E-value=2.2e-30 Score=281.28 Aligned_cols=243 Identities=28% Similarity=0.450 Sum_probs=203.2
Q ss_pred cCCCccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccc
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~ 242 (704)
..++.+|+||+|.+++++.|.+.+.+ +..|..|...+ ..++++||+||||||||++|+++|.+++.+|+.++++++..
T Consensus 77 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~ 155 (357)
T 3d8b_A 77 HGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 155 (357)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhc
Confidence 45678999999999999999998875 67777665543 67899999999999999999999999999999999999988
Q ss_pred h-hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCC-CChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEc
Q 005285 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR-KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (704)
Q Consensus 243 ~-~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~-~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (704)
. .+.....++.+|..++...|+||||||||.+...+.. .+......+++++..+++.... ...+++||+||
T Consensus 156 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~-------~~~~v~vI~at 228 (357)
T 3d8b_A 156 KWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTS-------SEDRILVVGAT 228 (357)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC-----------CCCCEEEEEEE
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhccccc-------CCCCEEEEEec
Confidence 7 4667778999999999999999999999999865432 2344567889999999976432 12458999999
Q ss_pred CCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Q 005285 321 NRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKG 399 (704)
Q Consensus 321 N~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r~~ 399 (704)
|+++.||++++| ||+..++++.|+.++|.+|++.++...... .+.++..++..+.||+++||.++|++|+..+.++.
T Consensus 229 n~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l 306 (357)
T 3d8b_A 229 NRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSL 306 (357)
T ss_dssp SCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHC
T ss_pred CChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHh
Confidence 999999999999 999999999999999999999888665432 45678999999999999999999999999988753
Q ss_pred ------------CCcccHHHHHHHHHHHH
Q 005285 400 ------------HSKIQQQDIVDVLDKQL 416 (704)
Q Consensus 400 ------------~~~It~~dl~~Al~~~~ 416 (704)
...|+.+|+..|+.++.
T Consensus 307 ~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 335 (357)
T 3d8b_A 307 QTADIATITPDQVRPIAYIDFENAFRTVR 335 (357)
T ss_dssp CC----------CCCBCHHHHHHHHHHHG
T ss_pred hhhhhccccccccCCcCHHHHHHHHHhcC
Confidence 25699999999998763
No 26
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.97 E-value=2.3e-30 Score=272.59 Aligned_cols=242 Identities=26% Similarity=0.461 Sum_probs=199.2
Q ss_pred cCCCccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccc
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~ 242 (704)
+.++.+|+|++|.+++++.|.+.+.. +..|..|...+ .+++++||+||||||||++|+++|++++.+|+.++++++..
T Consensus 14 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~ 92 (297)
T 3b9p_A 14 GGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTS 92 (297)
T ss_dssp CSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSS
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhh
Confidence 56788999999999999999887754 55666665544 46899999999999999999999999999999999999887
Q ss_pred h-hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCC-ChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEc
Q 005285 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK-DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (704)
Q Consensus 243 ~-~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~-~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (704)
. .+.+...++.+|..+....|+||||||+|.+...+... ........+.|+..+++..... ...+++||++|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~------~~~~v~vi~~t 166 (297)
T 3b9p_A 93 KYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNP------DGDRIVVLAAT 166 (297)
T ss_dssp SSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------------CEEEEEEE
T ss_pred cccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccC------CCCcEEEEeec
Confidence 6 45667788999999999999999999999997654322 2223556788999998865421 12348999999
Q ss_pred CCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCc-cccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Q 005285 321 NRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQL-AEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKG 399 (704)
Q Consensus 321 N~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l-~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r~~ 399 (704)
|+++.+|++++| ||+..++++.|+.++|..|++.++..... ..+.++..++..+.|++++||.++|++|+..|.++.
T Consensus 167 n~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~ 244 (297)
T 3b9p_A 167 NRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIREL 244 (297)
T ss_dssp SCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTC
T ss_pred CChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 99999999999999999999998876543 234578899999999999999999999999998874
Q ss_pred C------------CcccHHHHHHHHHH
Q 005285 400 H------------SKIQQQDIVDVLDK 414 (704)
Q Consensus 400 ~------------~~It~~dl~~Al~~ 414 (704)
. ..|+.+|+..|+.+
T Consensus 245 ~~~~~~~~~~~~~~~i~~~d~~~a~~~ 271 (297)
T 3b9p_A 245 NVEQVKCLDISAMRAITEQDFHSSLKR 271 (297)
T ss_dssp C--------CCCCCCCCHHHHHHHTTS
T ss_pred hhhhcccccccccCCcCHHHHHHHHHH
Confidence 2 46899999888765
No 27
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.97 E-value=1.4e-32 Score=327.38 Aligned_cols=228 Identities=34% Similarity=0.563 Sum_probs=198.8
Q ss_pred ccCCCccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCcccc
Q 005285 163 VSDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (704)
Q Consensus 163 ~~~~~~~f~dVvG~~~~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~ 241 (704)
...+.++|+|++|.+++|+.|.+++.+ ++.+..|...+..+++++||+||||||||++|+++|++++.+|+.++++++.
T Consensus 469 ~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~ 548 (806)
T 1ypw_A 469 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 548 (806)
T ss_dssp CCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSST
T ss_pred ccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhh
Confidence 356788999999999999999998875 6778888888999999999999999999999999999999999999999998
Q ss_pred ch-hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCC----hhHHHHHHHHHHHhcCCcccCCccccccCccEEE
Q 005285 242 DS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKD----PRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (704)
Q Consensus 242 ~~-~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~----~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (704)
.. .+.....++.+|+.|+...||||||||||.++..+.+.. .....++++||.+|++.... .+|+|
T Consensus 549 ~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~---------~~v~v 619 (806)
T 1ypw_A 549 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK---------KNVFI 619 (806)
T ss_dssp TCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC---------------CCBC
T ss_pred hhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccccc---------CCeEE
Confidence 87 466778899999999999999999999999987654322 24567889999999986543 34899
Q ss_pred EEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 005285 317 ICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSV 396 (704)
Q Consensus 317 IaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~ 396 (704)
|+|||+++.||++++|||||++.|+|+.|+.++|.+||+.+++..++..++++..++..+.||||+||.++|++|+..|.
T Consensus 620 I~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~ 699 (806)
T 1ypw_A 620 IGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAI 699 (806)
T ss_dssp CCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHH
T ss_pred EEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888889999999999999999999999999999998
Q ss_pred HhC
Q 005285 397 RKG 399 (704)
Q Consensus 397 r~~ 399 (704)
++.
T Consensus 700 ~~~ 702 (806)
T 1ypw_A 700 RES 702 (806)
T ss_dssp SCC
T ss_pred HHH
Confidence 875
No 28
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.96 E-value=2.7e-29 Score=275.57 Aligned_cols=242 Identities=26% Similarity=0.449 Sum_probs=194.2
Q ss_pred cCCCccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccc
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~ 242 (704)
..++.+|+||+|.+++++.|.+++.. +..+..|...+ .+++++||+||||||||++|+++|.+++.+|+.++|+++..
T Consensus 108 ~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 186 (389)
T 3vfd_A 108 NGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTS 186 (389)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC--
T ss_pred cCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhc
Confidence 45778999999999999988887754 45565555554 45799999999999999999999999999999999999988
Q ss_pred h-hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCC-CChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEc
Q 005285 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR-KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (704)
Q Consensus 243 ~-~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~-~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (704)
. .+.....++.+|..++...|+||||||||.+..++.. ........++.|+..|++.... ....|+||+||
T Consensus 187 ~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-------~~~~v~vI~at 259 (389)
T 3vfd_A 187 KYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSA-------GDDRVLVMGAT 259 (389)
T ss_dssp -----CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC------------CEEEEEEE
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhccccc-------CCCCEEEEEec
Confidence 7 4566777999999999999999999999999765432 2334566788899999875432 12458999999
Q ss_pred CCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHh-
Q 005285 321 NRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSVRK- 398 (704)
Q Consensus 321 N~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r~- 398 (704)
|+++.||++++| ||+..++++.|+.++|.+||+.++...... .+.++..|+..+.|+++++|.+|++.|+..+.++
T Consensus 260 n~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel 337 (389)
T 3vfd_A 260 NRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIREL 337 (389)
T ss_dssp SCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTS
T ss_pred CCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999 999999999999999999999888764432 3457889999999999999999999999999887
Q ss_pred -----------CCCcccHHHHHHHHHHH
Q 005285 399 -----------GHSKIQQQDIVDVLDKQ 415 (704)
Q Consensus 399 -----------~~~~It~~dl~~Al~~~ 415 (704)
....|+.+|+..++.+.
T Consensus 338 ~~~~~~~~~~~~~~~i~~~d~~~al~~~ 365 (389)
T 3vfd_A 338 KPEQVKNMSASEMRNIRLSDFTESLKKI 365 (389)
T ss_dssp CCC---CCSSSCCCCCCHHHHHHHHHHC
T ss_pred hhhhhhccchhhcCCcCHHHHHHHHHHc
Confidence 33568999999988763
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.96 E-value=1.6e-30 Score=275.06 Aligned_cols=182 Identities=19% Similarity=0.280 Sum_probs=137.9
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccch-hhhhHHHHHHHHHHH----hhCCCeEEEEccchhh
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-EKSGAARINEMFSIA----RRNAPAFVFVDEIDAI 274 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~-~~~g~~~vr~lF~~A----k~~~P~ILfIDEiDal 274 (704)
+.+.|+++|||||||||||++|+++|+++|.+|+.++++++... .+.....++.+|..| +...||||||||||++
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~ 111 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAG 111 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 67889999999999999999999999999999999999998877 566777899999988 5778999999999999
Q ss_pred hccCCCCCh---hHHHHHHHHHHHhcCCcccC--CccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHH
Q 005285 275 AGRHARKDP---RRRATFEALIAQLDGDKERT--GIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQ 349 (704)
Q Consensus 275 ~~~~~~~~~---e~~~~ln~LL~~ld~~~~~~--~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~e 349 (704)
++++.+... ......+.|+..||+..... +........+++||+|||+++.||++++||||||+.|. .|+.++
T Consensus 112 ~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~ 189 (293)
T 3t15_A 112 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 189 (293)
T ss_dssp ------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHH
T ss_pred cCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHH
Confidence 875432221 23456688888888543211 10012234569999999999999999999999999887 579999
Q ss_pred HHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHH
Q 005285 350 RVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNL 387 (704)
Q Consensus 350 R~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~L 387 (704)
|.+|++.++.. .+++...++..+.||++++|..+
T Consensus 190 r~~Il~~~~~~----~~~~~~~l~~~~~~~~~~~l~~~ 223 (293)
T 3t15_A 190 RIGVCTGIFRT----DNVPAEDVVKIVDNFPGQSIDFF 223 (293)
T ss_dssp HHHHHHHHHGG----GCCCHHHHHHHHHHSCSCCHHHH
T ss_pred HHHHHHHhccC----CCCCHHHHHHHhCCCCcccHHHH
Confidence 99999988763 35678899999999999998743
No 30
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.95 E-value=3.9e-27 Score=280.54 Aligned_cols=229 Identities=36% Similarity=0.599 Sum_probs=205.9
Q ss_pred cCCCccccceecCcccHHHHHHHHHH-hCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccc
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~ 242 (704)
..+.++|+||+|.+++++.|.+.+.. +++|..|..+++.+++++||+||||||||++|+++|++++.+++.+++.++..
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~ 276 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh
Confidence 34568999999999999999998876 99999999999999999999999999999999999999999999999999887
Q ss_pred h-hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCC-ChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEc
Q 005285 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK-DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (704)
Q Consensus 243 ~-~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~-~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (704)
. .+.....++.+|+.+....|+|+||||+|.+..++... .......+++|+..|++.... .++++|+||
T Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~---------~~v~vI~at 347 (806)
T 1ypw_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR---------AHVIVMAAT 347 (806)
T ss_dssp SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTT---------SCCEEEEEC
T ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhccc---------ccEEEeccc
Confidence 7 46677889999999999999999999999998765433 344566788999999986544 348999999
Q ss_pred CCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCC
Q 005285 321 NRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGH 400 (704)
Q Consensus 321 N~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r~~~ 400 (704)
|+++.+|+++.|+|||++.+.++.|+.++|.+||+.++....+..+.++..++..+.|++++|+..++++|+..+.++..
T Consensus 348 n~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~ 427 (806)
T 1ypw_A 348 NRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKM 427 (806)
T ss_dssp SCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999988888888999999999999999999999999999887654
Q ss_pred C
Q 005285 401 S 401 (704)
Q Consensus 401 ~ 401 (704)
.
T Consensus 428 ~ 428 (806)
T 1ypw_A 428 D 428 (806)
T ss_dssp T
T ss_pred c
Confidence 3
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.90 E-value=1.3e-25 Score=251.41 Aligned_cols=203 Identities=20% Similarity=0.266 Sum_probs=143.2
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcC--CCEEEEeCcccc
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESG--LPFVFASGAEFT 241 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g--~~~v~is~s~~~ 241 (704)
..+...|++++|++++++.+.+++..++. |..+|+++||+||||||||++|+++|++++ ++|+.++++++.
T Consensus 30 ~~~~~~~~~iiG~~~~~~~l~~~~~~~~~-------~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~ 102 (456)
T 2c9o_A 30 GLAKQAASGLVGQENAREACGVIVELIKS-------KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVY 102 (456)
T ss_dssp SCBCSEETTEESCHHHHHHHHHHHHHHHT-------TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGC
T ss_pred cChhhchhhccCHHHHHHHHHHHHHHHHh-------CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHH
Confidence 34667899999999999999998877654 455789999999999999999999999999 999999999998
Q ss_pred chh-hhhHHHHHHHHHHH---hhCCCeEEEEccchhhhccCCCCChhH-H-------------------HHHHHHHHHhc
Q 005285 242 DSE-KSGAARINEMFSIA---RRNAPAFVFVDEIDAIAGRHARKDPRR-R-------------------ATFEALIAQLD 297 (704)
Q Consensus 242 ~~~-~~g~~~vr~lF~~A---k~~~P~ILfIDEiDal~~~~~~~~~e~-~-------------------~~ln~LL~~ld 297 (704)
..+ +.... ++.+|..| +...||||||||+|++++++....... . ...+.++..++
T Consensus 103 ~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~ 181 (456)
T 2c9o_A 103 STEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQ 181 (456)
T ss_dssp CSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHH
T ss_pred HHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHh
Confidence 874 44444 99999999 788899999999999987653321100 0 11234566665
Q ss_pred CCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccce--eeeeCCCC--HHHHHHHHHHHhcCCCccccccHHHHH
Q 005285 298 GDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDR--RLYIGLPD--AKQRVQIFDVHSAGKQLAEDVNFEELV 373 (704)
Q Consensus 298 ~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~--~I~v~~Pd--~~eR~~Il~~~l~~~~l~~dvdl~~La 373 (704)
..... ....++|++|||+++.+|++++||||||+ .+.++.|+ .++|.+|++.+.. .|++.++
T Consensus 182 ~~~~~-------~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a 247 (456)
T 2c9o_A 182 KERVE-------AGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVAN 247 (456)
T ss_dssp HTTCC-------TTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC
T ss_pred hccCC-------CCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHH
Confidence 32111 12336666899999999999999999999 67777774 5788888775542 2688999
Q ss_pred HhccCCCHHHHHHHHHH
Q 005285 374 FRTVGFSGADIRNLVNE 390 (704)
Q Consensus 374 ~~t~G~sgadL~~Lv~e 390 (704)
..|.| |+||.++|+.
T Consensus 248 ~~t~g--gadl~~l~~~ 262 (456)
T 2c9o_A 248 ARPQG--GQDILSMMGQ 262 (456)
T ss_dssp -----------------
T ss_pred HhCCC--hhHHHHHHhh
Confidence 99999 9999999965
No 32
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.88 E-value=3.9e-22 Score=215.59 Aligned_cols=219 Identities=19% Similarity=0.273 Sum_probs=166.0
Q ss_pred CCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcC--CCEEEEeCccccc
Q 005285 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESG--LPFVFASGAEFTD 242 (704)
Q Consensus 165 ~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g--~~~v~is~s~~~~ 242 (704)
.+..+|++++|++++++.+..+...+... ..+++++||+||||||||++|+++|++++ .|++.+++..+..
T Consensus 38 ~p~~~~~~ivG~~~~~~~l~~l~~~~~~~-------~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 110 (368)
T 3uk6_A 38 EPRQASQGMVGQLAARRAAGVVLEMIREG-------KIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFS 110 (368)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHHHTT-------CCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSC
T ss_pred CcCcchhhccChHHHHHHHHHHHHHHHcC-------CCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhh
Confidence 45566999999999999888888777654 34468999999999999999999999987 4899999876433
Q ss_pred hh--------------------------------------------------hhhHHHHHHHHHHHhh---------CCC
Q 005285 243 SE--------------------------------------------------KSGAARINEMFSIARR---------NAP 263 (704)
Q Consensus 243 ~~--------------------------------------------------~~g~~~vr~lF~~Ak~---------~~P 263 (704)
.. +.....++..|..+.. ..|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~ 190 (368)
T 3uk6_A 111 LEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIP 190 (368)
T ss_dssp SSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CB
T ss_pred cccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccC
Confidence 21 1113345555554432 127
Q ss_pred eEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEc-----------CCCCCCcccccC
Q 005285 264 AFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT-----------NRPDELDLEFVR 332 (704)
Q Consensus 264 ~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT-----------N~p~~LD~aLlR 332 (704)
+||||||+|.+.. ..++.|+..++.... .++++++. |.++.+++++++
T Consensus 191 ~vl~IDEi~~l~~----------~~~~~L~~~le~~~~-----------~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s 249 (368)
T 3uk6_A 191 GVLFIDEVHMLDI----------ESFSFLNRALESDMA-----------PVLIMATNRGITRIRGTSYQSPHGIPIDLLD 249 (368)
T ss_dssp CEEEEESGGGSBH----------HHHHHHHHHTTCTTC-----------CEEEEEESCSEEECBTSSCEEETTCCHHHHT
T ss_pred ceEEEhhccccCh----------HHHHHHHHHhhCcCC-----------CeeeeecccceeeeeccCCCCcccCCHHHHh
Confidence 8999999999842 356777777765322 24444443 357889999999
Q ss_pred CCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHH
Q 005285 333 PGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDV 411 (704)
Q Consensus 333 pgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~A 411 (704)
||.. +.|++|+.+++.+|++.++...... ++..+..++..+.+.+++++.++++.|...|..++...|+.+++.++
T Consensus 250 --R~~~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a 326 (368)
T 3uk6_A 250 --RLLI-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRV 326 (368)
T ss_dssp --TEEE-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred --hccE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 9965 8999999999999999887653322 23347888888885689999999999999999999999999999999
Q ss_pred HHH
Q 005285 412 LDK 414 (704)
Q Consensus 412 l~~ 414 (704)
+..
T Consensus 327 ~~~ 329 (368)
T 3uk6_A 327 YSL 329 (368)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 33
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.87 E-value=1.3e-21 Score=206.41 Aligned_cols=224 Identities=15% Similarity=0.135 Sum_probs=167.1
Q ss_pred ccc-ceecCcccHHHHHHHHHHhCCchhhhhcCCc---cCceEEEEcCCCChHHHHHHHHHHHc-------CCCEEEEeC
Q 005285 169 MYK-EVVLGGDVWDLLDELMIYMGNPMQYYERGVQ---FVRGVLLSGPPGTGKTLFARTLAKES-------GLPFVFASG 237 (704)
Q Consensus 169 ~f~-dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~---~p~gvLL~GPPGTGKT~LAraiA~e~-------g~~~v~is~ 237 (704)
.++ +|+|++++++.|.+++..+..+..+...|.. .+.++||+||||||||++|+++|+.+ ..+++.+++
T Consensus 28 ~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 107 (309)
T 3syl_A 28 ELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR 107 (309)
T ss_dssp HHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred HHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence 344 7999999999999999887767777776654 34579999999999999999999987 349999999
Q ss_pred ccccch-hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEE
Q 005285 238 AEFTDS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (704)
Q Consensus 238 s~~~~~-~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (704)
+++... .+.....++.+|..+ .++||||||+|.+.+.+. .+......++.|+..|+... .+++|
T Consensus 108 ~~l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~-~~~~~~~~~~~Ll~~l~~~~-----------~~~~~ 172 (309)
T 3syl_A 108 DDLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDN-ERDYGQEAIEILLQVMENNR-----------DDLVV 172 (309)
T ss_dssp GGTCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC----CCTHHHHHHHHHHHHHCT-----------TTCEE
T ss_pred HHhhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCC-cccccHHHHHHHHHHHhcCC-----------CCEEE
Confidence 998876 455666778888877 468999999999975432 12234567788888887642 23788
Q ss_pred EEEcCCCC-----CCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcccc-ccHHHHHHh-------ccCCCHHH
Q 005285 317 ICATNRPD-----ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAED-VNFEELVFR-------TVGFSGAD 383 (704)
Q Consensus 317 IaaTN~p~-----~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~d-vdl~~La~~-------t~G~sgad 383 (704)
|++||.++ .++|+|++ ||+..+.|+.|+.+++.+|++.++......-+ ..+..++.. ...-++++
T Consensus 173 i~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~ 250 (309)
T 3syl_A 173 ILAGYADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARS 250 (309)
T ss_dssp EEEECHHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHH
T ss_pred EEeCChHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHH
Confidence 88888654 35799998 99999999999999999999998875544322 224455544 22234899
Q ss_pred HHHHHHHHHHHHHHh----CCCcccHHHHH
Q 005285 384 IRNLVNESGIMSVRK----GHSKIQQQDIV 409 (704)
Q Consensus 384 L~~Lv~eA~~~A~r~----~~~~It~~dl~ 409 (704)
+.++++.|...+..+ ....++.+++.
T Consensus 251 l~~~l~~a~~~~~~r~~~~~~~~~~~~~l~ 280 (309)
T 3syl_A 251 IRNALDRARLRQANRLFTASSGPLDARALS 280 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHC---CEEHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCHHHHh
Confidence 999999998766554 34556666654
No 34
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.85 E-value=2.3e-20 Score=199.69 Aligned_cols=224 Identities=16% Similarity=0.150 Sum_probs=168.7
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccch
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS 243 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~ 243 (704)
+..+.+|++++|.+.+++.+...+...+.+ ...+.++||+||||||||++|+++|++++.+|+.++|..+...
T Consensus 22 ~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~ 94 (338)
T 3pfi_A 22 SLRPSNFDGYIGQESIKKNLNVFIAAAKKR-------NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKS 94 (338)
T ss_dssp -CCCCSGGGCCSCHHHHHHHHHHHHHHHHT-------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCSH
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHHhc-------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccch
Confidence 345568999999999988888877765322 2456789999999999999999999999999999999876432
Q ss_pred hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCc-------cccccCccEEE
Q 005285 244 EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGI-------DRFSLRQAVIF 316 (704)
Q Consensus 244 ~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~-------~~~~~~~~ViV 316 (704)
..+...+.. ...+++|||||||.+.. ...+.|+..|+......-. .......++++
T Consensus 95 -----~~~~~~~~~--~~~~~vl~lDEi~~l~~----------~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T 3pfi_A 95 -----GDLAAILTN--LSEGDILFIDEIHRLSP----------AIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTL 157 (338)
T ss_dssp -----HHHHHHHHT--CCTTCEEEEETGGGCCH----------HHHHHHHHHHHTSCC---------CCCCCCCCCCCEE
T ss_pred -----hHHHHHHHh--ccCCCEEEEechhhcCH----------HHHHHHHHHHHhccchhhcccCccccceecCCCCeEE
Confidence 123333332 24578999999999842 3556677777654321000 00001125899
Q ss_pred EEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 005285 317 ICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMS 395 (704)
Q Consensus 317 IaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A 395 (704)
|++||+...++++|++ ||+..+.+++|+.+++.++++.++...... .+..+..++..+.| +.+.+.++++.+...+
T Consensus 158 i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~a 234 (338)
T 3pfi_A 158 IGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLKRVRDFA 234 (338)
T ss_dssp EEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHHHHHHHH
T ss_pred EEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHHHHHHHH
Confidence 9999999999999999 999999999999999999999887655433 23346777776555 6789999999998888
Q ss_pred HHhCCCcccHHHHHHHHHH
Q 005285 396 VRKGHSKIQQQDIVDVLDK 414 (704)
Q Consensus 396 ~r~~~~~It~~dl~~Al~~ 414 (704)
...+...|+.+++..++..
T Consensus 235 ~~~~~~~i~~~~~~~~~~~ 253 (338)
T 3pfi_A 235 DVNDEEIITEKRANEALNS 253 (338)
T ss_dssp HHTTCSEECHHHHHHHHHH
T ss_pred HhhcCCccCHHHHHHHHHH
Confidence 8888888999999888875
No 35
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.82 E-value=1.3e-19 Score=188.45 Aligned_cols=203 Identities=20% Similarity=0.253 Sum_probs=141.4
Q ss_pred ccceecCcccHHHHHH----HHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccch--
Q 005285 170 YKEVVLGGDVWDLLDE----LMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-- 243 (704)
Q Consensus 170 f~dVvG~~~~k~~L~e----lv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~-- 243 (704)
...++|.+...+.+.. ++..++. .+...++++||+||||||||++|+++|.+++.+|+.+++++....
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~------~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~ 105 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKN------SDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFS 105 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHH------CSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCC
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhc------cCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCc
Confidence 3467777655433333 3333332 234678899999999999999999999999999999998763322
Q ss_pred hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCC
Q 005285 244 EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRP 323 (704)
Q Consensus 244 ~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p 323 (704)
.......++.+|..+....++||||||+|.+.+.+..+.......++.|...+++.... ...++||+|||.+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~--------~~~~~ii~ttn~~ 177 (272)
T 1d2n_A 106 ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQ--------GRKLLIIGTTSRK 177 (272)
T ss_dssp HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCST--------TCEEEEEEEESCH
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCC--------CCCEEEEEecCCh
Confidence 22334568889999988889999999999997654333333445666677766654321 2358899999999
Q ss_pred CCCcc-cccCCCccceeeeeCCCCH-HHHHHHHHHHhcCCCccccccHHHHHHhccCC----CHHHHHHHHHHHH
Q 005285 324 DELDL-EFVRPGRIDRRLYIGLPDA-KQRVQIFDVHSAGKQLAEDVNFEELVFRTVGF----SGADIRNLVNESG 392 (704)
Q Consensus 324 ~~LD~-aLlRpgRfd~~I~v~~Pd~-~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~----sgadL~~Lv~eA~ 392 (704)
+.+++ .+.+ ||+..|.+|.++. ++..+++.. ...+ .+.++..++..+.|+ ..+++.++++.|.
T Consensus 178 ~~l~~~~l~~--rf~~~i~~p~l~~r~~i~~i~~~---~~~~-~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~ 246 (272)
T 1d2n_A 178 DVLQEMEMLN--AFSTTIHVPNIATGEQLLEALEL---LGNF-KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSL 246 (272)
T ss_dssp HHHHHTTCTT--TSSEEEECCCEEEHHHHHHHHHH---HTCS-CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHT
T ss_pred hhcchhhhhc--ccceEEcCCCccHHHHHHHHHHh---cCCC-CHHHHHHHHHHhcCCCccccHHHHHHHHHHHh
Confidence 99988 5555 9998888876655 444555443 2233 345688899998887 4566666666544
No 36
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.81 E-value=3.4e-19 Score=188.98 Aligned_cols=224 Identities=17% Similarity=0.166 Sum_probs=163.1
Q ss_pred CCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccchh
Q 005285 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE 244 (704)
Q Consensus 165 ~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~~ 244 (704)
..+.+|++++|.+.+++.+...+...... ...+.++||+||||||||++|++++++++.+++.++|+.+...
T Consensus 6 ~~p~~~~~~ig~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~- 77 (324)
T 1hqc_A 6 LRPKTLDEYIGQERLKQKLRVYLEAAKAR-------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP- 77 (324)
T ss_dssp CCCCSTTTCCSCHHHHHHHHHHHHHHHHH-------CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSH-
T ss_pred cCcccHHHhhCHHHHHHHHHHHHHHHHcc-------CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCCh-
Confidence 44568999999998888888777654321 1346789999999999999999999999999999999877542
Q ss_pred hhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccC----C---ccccccCccEEEE
Q 005285 245 KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERT----G---IDRFSLRQAVIFI 317 (704)
Q Consensus 245 ~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~----~---~~~~~~~~~ViVI 317 (704)
..+...|..+ ...+++|||||+|.+.. ...+.|+..++...... + ........++++|
T Consensus 78 ----~~l~~~l~~~-~~~~~~l~lDEi~~l~~----------~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i 142 (324)
T 1hqc_A 78 ----GDLAAILANS-LEEGDILFIDEIHRLSR----------QAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLI 142 (324)
T ss_dssp ----HHHHHHHTTT-CCTTCEEEETTTTSCCH----------HHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEE
T ss_pred ----HHHHHHHHHh-ccCCCEEEEECCccccc----------chHHHHHHHHHhhhhHHhccccccccccccCCCCEEEE
Confidence 1122222221 24578999999998842 13445555555432100 0 0000012358999
Q ss_pred EEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 005285 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSV 396 (704)
Q Consensus 318 aaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~ 396 (704)
++||.+..+++++++ ||+..+.+++|+.+++.++++.++...... .+..+..++..+.| +++.+.++++.+...|.
T Consensus 143 ~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~a~ 219 (324)
T 1hqc_A 143 GATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRVRDFAQ 219 (324)
T ss_dssp EEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHHHTTTST
T ss_pred EeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHH
Confidence 999999999999998 998899999999999999999887654332 23346788888766 57899999999888777
Q ss_pred HhCCCcccHHHHHHHHHH
Q 005285 397 RKGHSKIQQQDIVDVLDK 414 (704)
Q Consensus 397 r~~~~~It~~dl~~Al~~ 414 (704)
..+...|+.+++..++..
T Consensus 220 ~~~~~~i~~~~~~~~~~~ 237 (324)
T 1hqc_A 220 VAGEEVITRERALEALAA 237 (324)
T ss_dssp TTSCSCCCHHHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHH
Confidence 667778999998887765
No 37
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.81 E-value=2.1e-19 Score=188.77 Aligned_cols=241 Identities=20% Similarity=0.259 Sum_probs=159.5
Q ss_pred cceecCcccHHHHHHHHHH-hCCchhhhh-cCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccch-h-h-
Q 005285 171 KEVVLGGDVWDLLDELMIY-MGNPMQYYE-RGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-E-K- 245 (704)
Q Consensus 171 ~dVvG~~~~k~~L~elv~~-l~~p~~~~~-~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~-~-~- 245 (704)
++|+|++++++.+...+.. +..+..... .+...|.++||+||||||||++|+++|+.++.+++.++|+++... + +
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 3588999988887766543 121111100 012357899999999999999999999999999999999998763 2 2
Q ss_pred hhHHHHHHHHHHH-----hhCCCeEEEEccchhhhccCCC--CChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEE
Q 005285 246 SGAARINEMFSIA-----RRNAPAFVFVDEIDAIAGRHAR--KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFIC 318 (704)
Q Consensus 246 ~g~~~vr~lF~~A-----k~~~P~ILfIDEiDal~~~~~~--~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIa 318 (704)
.....++.+|..+ ....++||||||+|.+...... .+.......+.|+..|++........ .....++++|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~-~~~~~~~~~i~ 173 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHG-MVKTDHILFIA 173 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTE-EEECTTCEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccc-cccCCcEEEEE
Confidence 1234466666533 1123689999999999754322 12223345778888888642111000 11234578888
Q ss_pred E----cCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHh-------------cCCCc-cccccHHHHHHhcc---
Q 005285 319 A----TNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHS-------------AGKQL-AEDVNFEELVFRTV--- 377 (704)
Q Consensus 319 a----TN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l-------------~~~~l-~~dvdl~~La~~t~--- 377 (704)
+ ++.+..+++++++ ||+..+.|++|+.+++.+|++.+. .+..+ -++..+..|+..+.
T Consensus 174 ~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~ 251 (310)
T 1ofh_A 174 SGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVN 251 (310)
T ss_dssp EECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHH
T ss_pred cCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhc
Confidence 8 5678889999998 999899999999999999998321 11111 12223566666652
Q ss_pred ----CCCHHHHHHHHHHHHHHHHH-----hCCC-cccHHHHHHHHHH
Q 005285 378 ----GFSGADIRNLVNESGIMSVR-----KGHS-KIQQQDIVDVLDK 414 (704)
Q Consensus 378 ----G~sgadL~~Lv~eA~~~A~r-----~~~~-~It~~dl~~Al~~ 414 (704)
+...+.+.++++.+...+.. .+.. .|+.+++.+++..
T Consensus 252 ~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~ 298 (310)
T 1ofh_A 252 EKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGE 298 (310)
T ss_dssp HHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCS
T ss_pred ccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHh
Confidence 45788899998887643321 2222 4899998887754
No 38
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.77 E-value=6.6e-20 Score=203.06 Aligned_cols=169 Identities=18% Similarity=0.178 Sum_probs=78.0
Q ss_pred cceecCcccHHHHHHHHHH-hCCchhhhhcCC-ccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccch--hh-
Q 005285 171 KEVVLGGDVWDLLDELMIY-MGNPMQYYERGV-QFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS--EK- 245 (704)
Q Consensus 171 ~dVvG~~~~k~~L~elv~~-l~~p~~~~~~g~-~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~--~~- 245 (704)
++|+|++++|+.|...+.. .+.+..+..++. ..|+++||+||||||||++|+++|++++.+|+.++++.+.+. .+
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 4789999999988877643 333333333332 357899999999999999999999999999999999998874 34
Q ss_pred hhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEE-cCCCC
Q 005285 246 SGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICA-TNRPD 324 (704)
Q Consensus 246 ~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaa-TN~p~ 324 (704)
.....++.+|..|... +++||+|.+.... .+...++++++|+.+||++..... + +++ ||+++
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~~~~--~~~~e~rvl~~LL~~~dg~~~~~~---------v--~a~~TN~~~ 157 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNRARA--EDVAEERILDALLPPAKNQWGEVE---------N--HDSHSSTRQ 157 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhhccc--hhhHHHHHHHHHHHHhhccccccc---------c--ccccccCHH
Confidence 3577899999998775 3589999875432 233456789999999999754321 2 455 99999
Q ss_pred CCcccccCCCccceeeeeCCCCHH-HHHHHHHH
Q 005285 325 ELDLEFVRPGRIDRRLYIGLPDAK-QRVQIFDV 356 (704)
Q Consensus 325 ~LD~aLlRpgRfd~~I~v~~Pd~~-eR~~Il~~ 356 (704)
.||+||+||||||+.|+|+.|+.. .|.+|+..
T Consensus 158 ~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~~~ 190 (444)
T 1g41_A 158 AFRKKLREGQLDDKEIEIDVSAGVSMGVEIMAP 190 (444)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHcCCCcceEEEEcCCCCccchhhhhcC
Confidence 999999999999999999999988 78888754
No 39
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.77 E-value=4.1e-19 Score=202.90 Aligned_cols=232 Identities=19% Similarity=0.221 Sum_probs=150.7
Q ss_pred CccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccch---
Q 005285 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS--- 243 (704)
Q Consensus 167 ~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~--- 243 (704)
..-.+|++|.+++++.+.+.+...... ... .+..++|+||||||||++|+++|+.++.+++.+++..+...
T Consensus 77 ~~l~~di~G~~~vk~~i~~~~~l~~~~-----~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~ 150 (543)
T 3m6a_A 77 RLLDEEHHGLEKVKERILEYLAVQKLT-----KSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEI 150 (543)
T ss_dssp GTHHHHCSSCHHHHHHHHHHHHHHHHS-----SSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-------
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhc-----ccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhh
Confidence 445678999999998887665432111 011 46689999999999999999999999999999998875431
Q ss_pred -------hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcc----ccccCc
Q 005285 244 -------EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGID----RFSLRQ 312 (704)
Q Consensus 244 -------~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~----~~~~~~ 312 (704)
.+.....+...|..+....| ||||||||.+.... .....+.|+..|+......-.+ ......
T Consensus 151 ~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~------~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~ 223 (543)
T 3m6a_A 151 RGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDF------RGDPSSAMLEVLDPEQNSSFSDHYIEETFDLS 223 (543)
T ss_dssp -------------CHHHHHHTTCSSSE-EEEEEESSSCC---------------CCGGGTCTTTTTBCCCSSSCCCCBCS
T ss_pred hhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhh------ccCHHHHHHHHHhhhhcceeecccCCeeeccc
Confidence 12223446677888776666 99999999996432 1225577888887644322111 111125
Q ss_pred cEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcC-----CCcc------ccccHHHHHHhccC-CC
Q 005285 313 AVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAG-----KQLA------EDVNFEELVFRTVG-FS 380 (704)
Q Consensus 313 ~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~-----~~l~------~dvdl~~La~~t~G-~s 380 (704)
+++||+|||.++.+|++|++ ||+ .|.|+.|+.+++.+|++.|+.. ..+. .+..+..++....+ ..
T Consensus 224 ~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~ 300 (543)
T 3m6a_A 224 KVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAG 300 (543)
T ss_dssp SCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSS
T ss_pred ceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhc
Confidence 68999999999999999999 995 7999999999999999987621 1111 12234555553332 33
Q ss_pred HHH----HHHHHHHHHHHHHHh--CCCcccHHHHHHHHHH
Q 005285 381 GAD----IRNLVNESGIMSVRK--GHSKIQQQDIVDVLDK 414 (704)
Q Consensus 381 gad----L~~Lv~eA~~~A~r~--~~~~It~~dl~~Al~~ 414 (704)
.++ |+++|+.|+..+.+. +...|+.+++.+++..
T Consensus 301 vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~ 340 (543)
T 3m6a_A 301 VRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGK 340 (543)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCS
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCC
Confidence 344 455555555555443 3346899998887753
No 40
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.76 E-value=1.5e-17 Score=179.56 Aligned_cols=222 Identities=14% Similarity=0.117 Sum_probs=158.4
Q ss_pred ccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---------CCCEEEEeCc
Q 005285 168 SMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---------GLPFVFASGA 238 (704)
Q Consensus 168 ~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~---------g~~~v~is~s 238 (704)
..+++++|.++..+.+...+.... ....+.+++|+||||||||++|+++++++ +.++++++|.
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~--------~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPAL--------RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGT--------SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHH--------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 345788998866555554432211 12356789999999999999999999988 8899999998
Q ss_pred cccchhh-----------------h-hHHHHHHHHHHHhh-CCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCC
Q 005285 239 EFTDSEK-----------------S-GAARINEMFSIARR-NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGD 299 (704)
Q Consensus 239 ~~~~~~~-----------------~-g~~~vr~lF~~Ak~-~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~ 299 (704)
....... . .......++..... ..|+||||||+|.+...+ .....+..++..++..
T Consensus 88 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~-----~~~~~l~~l~~~~~~~ 162 (387)
T 2v1u_A 88 HRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP-----GGQDLLYRITRINQEL 162 (387)
T ss_dssp TSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST-----THHHHHHHHHHGGGCC
T ss_pred cCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC-----CCChHHHhHhhchhhc
Confidence 7543210 0 11224445555443 348999999999996421 1345666677666543
Q ss_pred cccCCccccccCccEEEEEEcCCC---CCCcccccCCCccce-eeeeCCCCHHHHHHHHHHHhcC----CCccccccHHH
Q 005285 300 KERTGIDRFSLRQAVIFICATNRP---DELDLEFVRPGRIDR-RLYIGLPDAKQRVQIFDVHSAG----KQLAEDVNFEE 371 (704)
Q Consensus 300 ~~~~~~~~~~~~~~ViVIaaTN~p---~~LD~aLlRpgRfd~-~I~v~~Pd~~eR~~Il~~~l~~----~~l~~dvdl~~ 371 (704)
.. ..++++|++||.+ +.+++++.+ ||.. .+.+++|+.+++.+|++.++.. ..+. +..+..
T Consensus 163 ~~---------~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~ 230 (387)
T 2v1u_A 163 GD---------RVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD-PDVVPL 230 (387)
T ss_dssp --------------CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC-SSHHHH
T ss_pred CC---------CceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC-HHHHHH
Confidence 20 1247899999987 678899988 8875 8999999999999999987653 2233 234667
Q ss_pred HHHhcc---CCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Q 005285 372 LVFRTV---GFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQ 415 (704)
Q Consensus 372 La~~t~---G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al~~~ 415 (704)
++..+. | .++.+.++++.|...|..++...|+.+++..++...
T Consensus 231 l~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 231 CAALAAREHG-DARRALDLLRVAGEIAERRREERVRREHVYSARAEI 276 (387)
T ss_dssp HHHHHHSSSC-CHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred HHHHHHHhcc-CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 777766 5 577888999999999888888899999999998875
No 41
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.76 E-value=3.5e-18 Score=182.54 Aligned_cols=221 Identities=19% Similarity=0.168 Sum_probs=151.0
Q ss_pred ccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccch-hhh
Q 005285 168 SMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-EKS 246 (704)
Q Consensus 168 ~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~-~~~ 246 (704)
..+++++|++++++.+...+.. ..++||+||||||||++|+++|+.++.+++.+++...... ...
T Consensus 24 ~~~~~i~g~~~~~~~l~~~l~~--------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~ 89 (331)
T 2r44_A 24 EVGKVVVGQKYMINRLLIGICT--------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLI 89 (331)
T ss_dssp HHTTTCCSCHHHHHHHHHHHHH--------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHH
T ss_pred HhccceeCcHHHHHHHHHHHHc--------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcC
Confidence 3467889998877655544321 2479999999999999999999999999999998532211 000
Q ss_pred hHHHH---HHHHHHHhhCC---CeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEc
Q 005285 247 GAARI---NEMFSIARRNA---PAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (704)
Q Consensus 247 g~~~v---r~lF~~Ak~~~---P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (704)
+.... ...| ..... .+||||||+|.+.. ...+.|+..|+...............+++||+|+
T Consensus 90 g~~~~~~~~~~~--~~~~g~l~~~vl~iDEi~~~~~----------~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~ 157 (331)
T 2r44_A 90 GTMIYNQHKGNF--EVKKGPVFSNFILADEVNRSPA----------KVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQ 157 (331)
T ss_dssp EEEEEETTTTEE--EEEECTTCSSEEEEETGGGSCH----------HHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEE
T ss_pred CceeecCCCCce--EeccCcccccEEEEEccccCCH----------HHHHHHHHHHhcCceeeCCEEEECCCCEEEEEec
Confidence 00000 0000 00112 37999999998742 3556677766653222111122234457888888
Q ss_pred CCCC-----CCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCC------------------------ccccccHHH
Q 005285 321 NRPD-----ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQ------------------------LAEDVNFEE 371 (704)
Q Consensus 321 N~p~-----~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~------------------------l~~dvdl~~ 371 (704)
|..+ .+++++++ ||+.++.++.|+.+++.+|++.++.... +.++ .+..
T Consensus 158 np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~-~~~~ 234 (331)
T 2r44_A 158 NPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISES-LEKY 234 (331)
T ss_dssp CTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHH-HHHH
T ss_pred CCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHH-HHHH
Confidence 8543 38999999 9998999999999999999998875421 1111 1233
Q ss_pred HHHh-------------------ccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH
Q 005285 372 LVFR-------------------TVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLL 417 (704)
Q Consensus 372 La~~-------------------t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al~~~~~ 417 (704)
++.. ..|.|.+.+.++++.|...|..+++..|+.+|+.+++..++.
T Consensus 235 i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~ 299 (331)
T 2r44_A 235 IIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILN 299 (331)
T ss_dssp HHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhH
Confidence 3221 136699999999999999999999999999999999988763
No 42
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.75 E-value=2.7e-17 Score=162.52 Aligned_cols=206 Identities=18% Similarity=0.191 Sum_probs=142.8
Q ss_pred CCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc-----CCCEEEEeCcc
Q 005285 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-----GLPFVFASGAE 239 (704)
Q Consensus 165 ~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~-----g~~~v~is~s~ 239 (704)
..+.+|++++|.++..+.+.+.+. .. .+.+++|+||||||||++|+++++++ ..+++.++++.
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~---~~---------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 78 (226)
T 2chg_A 11 YRPRTLDEVVGQDEVIQRLKGYVE---RK---------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD 78 (226)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHH---TT---------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTC
T ss_pred cCCCCHHHHcCcHHHHHHHHHHHh---CC---------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccc
Confidence 456789999999877766665543 22 23359999999999999999999875 56788888876
Q ss_pred ccchhhhhHHHHHHHHHH--HhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEE
Q 005285 240 FTDSEKSGAARINEMFSI--ARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (704)
Q Consensus 240 ~~~~~~~g~~~vr~lF~~--Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (704)
...... ....+...... .....++||||||+|.+.. ...+.|+..++... .++.+|
T Consensus 79 ~~~~~~-~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~----------~~~~~l~~~l~~~~-----------~~~~~i 136 (226)
T 2chg_A 79 ERGIDV-VRHKIKEFARTAPIGGAPFKIIFLDEADALTA----------DAQAALRRTMEMYS-----------KSCRFI 136 (226)
T ss_dssp TTCHHH-HHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH----------HHHHHHHHHHHHTT-----------TTEEEE
T ss_pred ccChHH-HHHHHHHHhcccCCCccCceEEEEeChhhcCH----------HHHHHHHHHHHhcC-----------CCCeEE
Confidence 543211 11111111111 1124689999999999842 13445555555422 236888
Q ss_pred EEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 005285 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSV 396 (704)
Q Consensus 318 aaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~ 396 (704)
++||.++.+++++.+ ||. .+.+++|+.+++.++++.++...... .+..+..++..+.| ..+.+.++++.++..+
T Consensus 137 ~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~~- 211 (226)
T 2chg_A 137 LSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAIG- 211 (226)
T ss_dssp EEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHTC-
T ss_pred EEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC-
Confidence 999999999999998 897 89999999999999999877532222 23346778877765 5666777777666543
Q ss_pred HhCCCcccHHHHHHHHH
Q 005285 397 RKGHSKIQQQDIVDVLD 413 (704)
Q Consensus 397 r~~~~~It~~dl~~Al~ 413 (704)
..|+.+++.+++.
T Consensus 212 ----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 212 ----EVVDADTIYQITA 224 (226)
T ss_dssp ----SCBCHHHHHHHHH
T ss_pred ----ceecHHHHHHHhc
Confidence 5799999988774
No 43
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.75 E-value=7.6e-18 Score=182.61 Aligned_cols=225 Identities=19% Similarity=0.258 Sum_probs=147.1
Q ss_pred eecCcccHHHHHHHHHHhCCchhhh---hcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccch--hhhh
Q 005285 173 VVLGGDVWDLLDELMIYMGNPMQYY---ERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS--EKSG 247 (704)
Q Consensus 173 VvG~~~~k~~L~elv~~l~~p~~~~---~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~--~~~g 247 (704)
|+|++++++.+...+.......... ......+.++||+||||||||++|+++|..++.||+.++|+++... .+..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~ 96 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 96 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence 6899999888877664211111000 0112367899999999999999999999999999999999998765 2332
Q ss_pred -HHHHHHHHHHH----hhCCCeEEEEccchhhhccCCCC----ChhHHHHHHHHHHHhcCCcccC---Ccc-------cc
Q 005285 248 -AARINEMFSIA----RRNAPAFVFVDEIDAIAGRHARK----DPRRRATFEALIAQLDGDKERT---GID-------RF 308 (704)
Q Consensus 248 -~~~vr~lF~~A----k~~~P~ILfIDEiDal~~~~~~~----~~e~~~~ln~LL~~ld~~~~~~---~~~-------~~ 308 (704)
...++.+|..+ ....++||||||+|.+...+.+. +......++.|+..|++..... +.. ..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~ 176 (363)
T 3hws_A 97 VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQ 176 (363)
T ss_dssp HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCC
T ss_pred HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEE
Confidence 34567777766 34457899999999997654322 2223347899999999542110 000 01
Q ss_pred ccCccEEEEEEcCCC----------CC-----------------------------------CcccccCCCccceeeeeC
Q 005285 309 SLRQAVIFICATNRP----------DE-----------------------------------LDLEFVRPGRIDRRLYIG 343 (704)
Q Consensus 309 ~~~~~ViVIaaTN~p----------~~-----------------------------------LD~aLlRpgRfd~~I~v~ 343 (704)
-...++++|+++|.. .. ++|+|+. ||+..+.++
T Consensus 177 i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~~ 254 (363)
T 3hws_A 177 VDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATLN 254 (363)
T ss_dssp CCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEECC
T ss_pred EECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeecC
Confidence 122345666666642 11 5677777 999999999
Q ss_pred CCCHHHHHHHHHH----Hh-------cCCCcc---ccccHHHHHH--hccCCCHHHHHHHHHHHHHHHHHhC
Q 005285 344 LPDAKQRVQIFDV----HS-------AGKQLA---EDVNFEELVF--RTVGFSGADIRNLVNESGIMSVRKG 399 (704)
Q Consensus 344 ~Pd~~eR~~Il~~----~l-------~~~~l~---~dvdl~~La~--~t~G~sgadL~~Lv~eA~~~A~r~~ 399 (704)
+|+.+++.+|+.. .+ ...... .+..+..|+. ....+..++|+++++.+...+..+.
T Consensus 255 pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~ 326 (363)
T 3hws_A 255 ELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDL 326 (363)
T ss_dssp CCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHST
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhc
Confidence 9999999999885 11 111111 1222455664 3345556889998888887766543
No 44
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.75 E-value=5.1e-18 Score=180.52 Aligned_cols=205 Identities=17% Similarity=0.205 Sum_probs=135.5
Q ss_pred ccCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccc
Q 005285 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (704)
Q Consensus 163 ~~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~ 242 (704)
++..+.+|++++|++++++.|...+. . ...|..+|++||||||||++|+++|++++.+++.+++++..
T Consensus 18 ~k~rP~~~~~ivg~~~~~~~l~~~l~---~--------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~- 85 (324)
T 3u61_B 18 QKYRPSTIDECILPAFDKETFKSITS---K--------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK- 85 (324)
T ss_dssp HHSCCCSTTTSCCCHHHHHHHHHHHH---T--------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC-
T ss_pred HhhCCCCHHHHhCcHHHHHHHHHHHH---c--------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC-
Confidence 35667899999999988877776655 1 24567889999999999999999999999999999987743
Q ss_pred hhhhhHHHHHHHHHHHhh-----CCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEE
Q 005285 243 SEKSGAARINEMFSIARR-----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (704)
Q Consensus 243 ~~~~g~~~vr~lF~~Ak~-----~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (704)
...++..+..... ..++||||||+|.+.++ ...+.|+..++... .++.+|
T Consensus 86 -----~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~---------~~~~~L~~~le~~~-----------~~~~iI 140 (324)
T 3u61_B 86 -----IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLA---------ESQRHLRSFMEAYS-----------SNCSII 140 (324)
T ss_dssp -----HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGH---------HHHHHHHHHHHHHG-----------GGCEEE
T ss_pred -----HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcH---------HHHHHHHHHHHhCC-----------CCcEEE
Confidence 2234443333222 25789999999999521 23455666555422 236889
Q ss_pred EEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhc---------CCCccccccHHHHHHhccCCCHHHHHHHH
Q 005285 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA---------GKQLAEDVNFEELVFRTVGFSGADIRNLV 388 (704)
Q Consensus 318 aaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~---------~~~l~~dvdl~~La~~t~G~sgadL~~Lv 388 (704)
++||.+..+++++++ ||. .+.|+.|+.++|.+|++.... +..+.+...+..++..+.| |++.++
T Consensus 141 ~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g----d~R~a~ 213 (324)
T 3u61_B 141 ITANNIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFP----DFRKTI 213 (324)
T ss_dssp EEESSGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCS----CTTHHH
T ss_pred EEeCCccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCC----CHHHHH
Confidence 999999999999999 994 799999999998776654321 2223221346677777555 344444
Q ss_pred HHHHHHHHHhCCCcccHHHHHHHHHH
Q 005285 389 NESGIMSVRKGHSKIQQQDIVDVLDK 414 (704)
Q Consensus 389 ~eA~~~A~r~~~~~It~~dl~~Al~~ 414 (704)
+.....+ ....|+.+++..++..
T Consensus 214 ~~L~~~~---~~~~i~~~~v~~~~~~ 236 (324)
T 3u61_B 214 GELDSYS---SKGVLDAGILSLVTND 236 (324)
T ss_dssp HHHHHHG---GGTCBCC---------
T ss_pred HHHHHHh---ccCCCCHHHHHHHhCC
Confidence 4333333 2235888887766543
No 45
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.75 E-value=1.1e-17 Score=186.76 Aligned_cols=206 Identities=18% Similarity=0.246 Sum_probs=148.9
Q ss_pred cCCCccccceecCcccH---HHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccc
Q 005285 164 SDTKSMYKEVVLGGDVW---DLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF 240 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k---~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~ 240 (704)
...+.+|++++|++++. ..|...+.. . ...++||+||||||||++|+++|+.++.+|+.+++...
T Consensus 19 r~rP~~l~~ivGq~~~~~~~~~L~~~i~~---~---------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~ 86 (447)
T 3pvs_A 19 RMRPENLAQYIGQQHLLAAGKPLPRAIEA---G---------HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTS 86 (447)
T ss_dssp HTCCCSTTTCCSCHHHHSTTSHHHHHHHH---T---------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC
T ss_pred HhCCCCHHHhCCcHHHHhchHHHHHHHHc---C---------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC
Confidence 34567899999999877 444444432 2 12589999999999999999999999999999987543
Q ss_pred cchhhhhHHHHHHHHHHHhh----CCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEE
Q 005285 241 TDSEKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (704)
Q Consensus 241 ~~~~~~g~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (704)
+...++.+|..+.. ..++||||||||.+... ..+.|+..++.. .+++
T Consensus 87 ------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~----------~q~~LL~~le~~-------------~v~l 137 (447)
T 3pvs_A 87 ------GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS----------QQDAFLPHIEDG-------------TITF 137 (447)
T ss_dssp ------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC----------------CCHHHHHTT-------------SCEE
T ss_pred ------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH----------HHHHHHHHHhcC-------------ceEE
Confidence 23345566655543 45799999999998432 345677777652 1566
Q ss_pred EEEc--CCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCC-------Cc-cccccHHHHHHhccCCCHHHHHH
Q 005285 317 ICAT--NRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGK-------QL-AEDVNFEELVFRTVGFSGADIRN 386 (704)
Q Consensus 317 IaaT--N~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~-------~l-~~dvdl~~La~~t~G~sgadL~~ 386 (704)
|++| |....++++|++ ||. .+.++.|+.+++.++++..+... .+ ..+..+..|+..+.| ..+.+.+
T Consensus 138 I~att~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln 213 (447)
T 3pvs_A 138 IGATTENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALN 213 (447)
T ss_dssp EEEESSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHH
T ss_pred EecCCCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHH
Confidence 7666 445689999999 885 78899999999999999887651 11 122346778887655 6788889
Q ss_pred HHHHHHHHHHHh--CCCcccHHHHHHHHHH
Q 005285 387 LVNESGIMSVRK--GHSKIQQQDIVDVLDK 414 (704)
Q Consensus 387 Lv~eA~~~A~r~--~~~~It~~dl~~Al~~ 414 (704)
+++.+...+... +...|+.+++.+++.+
T Consensus 214 ~Le~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 214 TLEMMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp HHHHHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred HHHHHHHhcccccCCCCccCHHHHHHHHhh
Confidence 999888877533 4567999999888764
No 46
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.74 E-value=2.4e-17 Score=165.93 Aligned_cols=209 Identities=13% Similarity=0.135 Sum_probs=140.9
Q ss_pred CCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccccc
Q 005285 166 TKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTD 242 (704)
Q Consensus 166 ~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~~ 242 (704)
+..+|+++++.+..+..+..+..+...+ .+.+++|+||||||||++|+++++++ +.+++++++.++..
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~ 93 (242)
T 3bos_A 23 DDETFTSYYPAAGNDELIGALKSAASGD---------GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHAS 93 (242)
T ss_dssp TTCSTTTSCC--CCHHHHHHHHHHHHTC---------SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGG
T ss_pred CCCChhhccCCCCCHHHHHHHHHHHhCC---------CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence 4578999998544455555555554432 46789999999999999999999876 47899999988765
Q ss_pred hhhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccE-EEEEEcC
Q 005285 243 SEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAV-IFICATN 321 (704)
Q Consensus 243 ~~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~V-iVIaaTN 321 (704)
...... . ....+.+|||||+|.+... .. ..+.|+..++..... ..+ +|+++++
T Consensus 94 ~~~~~~-------~--~~~~~~vliiDe~~~~~~~-----~~---~~~~l~~~l~~~~~~---------~~~~ii~~~~~ 147 (242)
T 3bos_A 94 ISTALL-------E--GLEQFDLICIDDVDAVAGH-----PL---WEEAIFDLYNRVAEQ---------KRGSLIVSASA 147 (242)
T ss_dssp SCGGGG-------T--TGGGSSEEEEETGGGGTTC-----HH---HHHHHHHHHHHHHHH---------CSCEEEEEESS
T ss_pred HHHHHH-------H--hccCCCEEEEeccccccCC-----HH---HHHHHHHHHHHHHHc---------CCCeEEEEcCC
Confidence 432111 1 1134789999999998532 11 122333333321111 113 4444444
Q ss_pred CCC---CCcccccCCCccc--eeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 005285 322 RPD---ELDLEFVRPGRID--RRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMS 395 (704)
Q Consensus 322 ~p~---~LD~aLlRpgRfd--~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A 395 (704)
.++ .+++++.+ ||. ..+.+++|+.+++.++++.++...... .+..+..++..+.| +.+++.++++.+...|
T Consensus 148 ~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a 224 (242)
T 3bos_A 148 SPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKAS 224 (242)
T ss_dssp CTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHH
Confidence 443 45678887 886 899999999999999999887643322 22346778887765 7899999999998888
Q ss_pred HHhCCCcccHHHHHHHHH
Q 005285 396 VRKGHSKIQQQDIVDVLD 413 (704)
Q Consensus 396 ~r~~~~~It~~dl~~Al~ 413 (704)
..++ ..|+.+++.+++.
T Consensus 225 ~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 225 MVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp HHHT-CCCCHHHHHHHHT
T ss_pred HHhC-CCCcHHHHHHHhh
Confidence 6555 4699999988763
No 47
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.74 E-value=1.8e-17 Score=184.68 Aligned_cols=220 Identities=14% Similarity=0.219 Sum_probs=149.5
Q ss_pred CCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc-----CCCEEEEeCcc
Q 005285 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-----GLPFVFASGAE 239 (704)
Q Consensus 165 ~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~-----g~~~v~is~s~ 239 (704)
.+..+|++++..++....+..+.....+| .. +.+++|+||||||||+||+++|+++ +.+++++++.+
T Consensus 99 ~~~~tfd~fv~g~~n~~a~~~~~~~a~~~-------~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~ 170 (440)
T 2z4s_A 99 NPDYTFENFVVGPGNSFAYHAALEVAKHP-------GR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_dssp CTTCSGGGCCCCTTTHHHHHHHHHHHHST-------TS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH
T ss_pred CCCCChhhcCCCCchHHHHHHHHHHHhCC-------CC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 45678999884333333444455555554 12 6789999999999999999999988 89999999988
Q ss_pred ccchhhhh-HHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEE
Q 005285 240 FTDSEKSG-AARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFIC 318 (704)
Q Consensus 240 ~~~~~~~g-~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIa 318 (704)
+....... .......|.......++||||||+|.+.++ .. ....|+..++..... ...+||+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~-----~~---~q~~l~~~l~~l~~~---------~~~iIit 233 (440)
T 2z4s_A 171 FLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK-----TG---VQTELFHTFNELHDS---------GKQIVIC 233 (440)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC-----HH---HHHHHHHHHHHHHTT---------TCEEEEE
T ss_pred HHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC-----hH---HHHHHHHHHHHHHHC---------CCeEEEE
Confidence 75432111 111112333333336899999999998632 11 223333333221111 1145555
Q ss_pred EcCCCCC---CcccccCCCccc--eeeeeCCCCHHHHHHHHHHHhcC--CCccccccHHHHHHhccCCCHHHHHHHHHHH
Q 005285 319 ATNRPDE---LDLEFVRPGRID--RRLYIGLPDAKQRVQIFDVHSAG--KQLAEDVNFEELVFRTVGFSGADIRNLVNES 391 (704)
Q Consensus 319 aTN~p~~---LD~aLlRpgRfd--~~I~v~~Pd~~eR~~Il~~~l~~--~~l~~dvdl~~La~~t~G~sgadL~~Lv~eA 391 (704)
+.+.+.. +++++++ ||. ..+.+++|+.++|.+|++..+.. ..+.++ .+..|+..+.| +.+++.++++.+
T Consensus 234 t~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e-~l~~la~~~~g-n~R~l~~~L~~~ 309 (440)
T 2z4s_A 234 SDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEE-VLNFVAENVDD-NLRRLRGAIIKL 309 (440)
T ss_dssp ESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTT-HHHHHHHHCCS-CHHHHHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhcCC-CHHHHHHHHHHH
Confidence 5454554 7889998 996 78999999999999999987753 334433 36788887765 799999999999
Q ss_pred HHHHHHhCCCcccHHHHHHHHHH
Q 005285 392 GIMSVRKGHSKIQQQDIVDVLDK 414 (704)
Q Consensus 392 ~~~A~r~~~~~It~~dl~~Al~~ 414 (704)
...|...+. .|+.+++.+++..
T Consensus 310 ~~~a~~~~~-~It~~~~~~~l~~ 331 (440)
T 2z4s_A 310 LVYKETTGK-EVDLKEAILLLKD 331 (440)
T ss_dssp HHHHHHSSS-CCCHHHHHHHTST
T ss_pred HHHHHHhCC-CCCHHHHHHHHHH
Confidence 988876664 6999998888764
No 48
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.74 E-value=2.2e-17 Score=176.78 Aligned_cols=227 Identities=18% Similarity=0.215 Sum_probs=144.2
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCC-------C-----
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGL-------P----- 231 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~-------~----- 231 (704)
..++.+|++++|++++++.+... ...+ .+.++||+||||||||++|+++|..++. +
T Consensus 17 ~~~~~~f~~i~G~~~~~~~l~~~---~~~~---------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~ 84 (350)
T 1g8p_A 17 TRPVFPFSAIVGQEDMKLALLLT---AVDP---------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPN 84 (350)
T ss_dssp -CCCCCGGGSCSCHHHHHHHHHH---HHCG---------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSS
T ss_pred CCCCCCchhccChHHHHHHHHHH---hhCC---------CCceEEEECCCCccHHHHHHHHHHhCccccccccccccccc
Confidence 34567899999998876553221 1121 2346999999999999999999998862 2
Q ss_pred ---------------------EEEEeCccccchhhhhHHHHHHHHHHHh---------hCCCeEEEEccchhhhccCCCC
Q 005285 232 ---------------------FVFASGAEFTDSEKSGAARINEMFSIAR---------RNAPAFVFVDEIDAIAGRHARK 281 (704)
Q Consensus 232 ---------------------~v~is~s~~~~~~~~g~~~vr~lF~~Ak---------~~~P~ILfIDEiDal~~~~~~~ 281 (704)
++.+..+...... .+...+...|..+. ...++||||||+|.+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~----- 158 (350)
T 1g8p_A 85 VEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRV-VGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLED----- 158 (350)
T ss_dssp GGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHH-HCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH-----
T ss_pred cccccchhhhhccccccCCCcccccCCCcchhhh-eeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCH-----
Confidence 2221111100000 00000122222221 11368999999999842
Q ss_pred ChhHHHHHHHHHHHhcCCc---ccCCccccccCccEEEEEEcCCCC-CCcccccCCCccceeeeeCCC-CHHHHHHHHHH
Q 005285 282 DPRRRATFEALIAQLDGDK---ERTGIDRFSLRQAVIFICATNRPD-ELDLEFVRPGRIDRRLYIGLP-DAKQRVQIFDV 356 (704)
Q Consensus 282 ~~e~~~~ln~LL~~ld~~~---~~~~~~~~~~~~~ViVIaaTN~p~-~LD~aLlRpgRfd~~I~v~~P-d~~eR~~Il~~ 356 (704)
..++.|+..|+... ...+ ........+++|+|||..+ .++++|++ ||+.++.++.| +.+++.+|++.
T Consensus 159 -----~~~~~Ll~~le~~~~~~~~~g-~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~ 230 (350)
T 1g8p_A 159 -----HIVDLLLDVAQSGENVVERDG-LSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRR 230 (350)
T ss_dssp -----HHHHHHHHHHHHSEEEECCTT-CCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHH
T ss_pred -----HHHHHHHHHHhcCceEEEecc-eEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHH
Confidence 24556666655421 1111 1112233689999999755 89999999 99999999999 67788788865
Q ss_pred Hhc-------------------------------CCCccccccHHHHHHhccC---CCHHHHHHHHHHHHHHHHHhCCCc
Q 005285 357 HSA-------------------------------GKQLAEDVNFEELVFRTVG---FSGADIRNLVNESGIMSVRKGHSK 402 (704)
Q Consensus 357 ~l~-------------------------------~~~l~~dvdl~~La~~t~G---~sgadL~~Lv~eA~~~A~r~~~~~ 402 (704)
++. ...+.+ ..+..|+....+ -+.+.+.++++.|...|..+++..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~-~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~ 309 (350)
T 1g8p_A 231 RDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPN-TALYDCAALCIALGSDGLRGELTLLRSARALAALEGATA 309 (350)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCH-HHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSB
T ss_pred HHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCc
Confidence 311 112222 223444444332 267999999999999998888889
Q ss_pred ccHHHHHHHHHHHHH
Q 005285 403 IQQQDIVDVLDKQLL 417 (704)
Q Consensus 403 It~~dl~~Al~~~~~ 417 (704)
|+.+|+.+|+..++.
T Consensus 310 v~~~~v~~a~~~~l~ 324 (350)
T 1g8p_A 310 VGRDHLKRVATMALS 324 (350)
T ss_dssp CCHHHHHHHHHHHHG
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999988764
No 49
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.73 E-value=2.5e-17 Score=175.42 Aligned_cols=199 Identities=17% Similarity=0.248 Sum_probs=131.5
Q ss_pred CCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCcccc
Q 005285 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFT 241 (704)
Q Consensus 165 ~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~ 241 (704)
.+..+|++++...+.......+...+..+ ...+.+++|+||||||||++|+++++++ +.+++++++.++.
T Consensus 5 ~~~~~f~~fv~g~~~~~a~~~~~~~~~~~-------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~ 77 (324)
T 1l8q_A 5 NPKYTLENFIVGEGNRLAYEVVKEALENL-------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA 77 (324)
T ss_dssp CTTCCSSSCCCCTTTHHHHHHHHHHHHTT-------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCCCCcccCCCCCcHHHHHHHHHHHHhCc-------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH
Confidence 34678999983333333334444444444 1346789999999999999999999988 8999999998875
Q ss_pred chhhhh-HHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEc
Q 005285 242 DSEKSG-AARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (704)
Q Consensus 242 ~~~~~g-~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (704)
...... .......|..... .++||||||+|.+.++ ....+.+..++..+.. . ...+|++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~~-----~~~~~~l~~~l~~~~~---~---------~~~iii~~~ 139 (324)
T 1l8q_A 78 QAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSGK-----ERTQIEFFHIFNTLYL---L---------EKQIILASD 139 (324)
T ss_dssp HHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTTC-----HHHHHHHHHHHHHHHH---T---------TCEEEEEES
T ss_pred HHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccCC-----hHHHHHHHHHHHHHHH---C---------CCeEEEEec
Confidence 542111 1111122333222 3789999999998532 1122222233332211 1 125667777
Q ss_pred CCCC---CCcccccCCCccc--eeeeeCCCCHHHHHHHHHHHhcCCC--ccccccHHHHHHhccCCCHHHHHHHHHHHHH
Q 005285 321 NRPD---ELDLEFVRPGRID--RRLYIGLPDAKQRVQIFDVHSAGKQ--LAEDVNFEELVFRTVGFSGADIRNLVNESGI 393 (704)
Q Consensus 321 N~p~---~LD~aLlRpgRfd--~~I~v~~Pd~~eR~~Il~~~l~~~~--l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~ 393 (704)
+.+. .++++|++ ||+ ..+.+++ +.+++.+|++.++.... +.+ ..+..|+..+ -..+++.++++.+..
T Consensus 140 ~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~-~~l~~l~~~~--g~~r~l~~~l~~~~~ 213 (324)
T 1l8q_A 140 RHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRK-EVIDYLLENT--KNVREIEGKIKLIKL 213 (324)
T ss_dssp SCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCH-HHHHHHHHHC--SSHHHHHHHHHHHHH
T ss_pred CChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHhC--CCHHHHHHHHHHHHH
Confidence 7666 68899998 996 6789999 99999999998876433 333 3477888887 467888888887765
Q ss_pred H
Q 005285 394 M 394 (704)
Q Consensus 394 ~ 394 (704)
.
T Consensus 214 ~ 214 (324)
T 1l8q_A 214 K 214 (324)
T ss_dssp H
T ss_pred c
Confidence 5
No 50
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.72 E-value=1.6e-16 Score=158.68 Aligned_cols=204 Identities=21% Similarity=0.282 Sum_probs=146.1
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC------------
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP------------ 231 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~------------ 231 (704)
+..+.+|++++|.++..+.|...+..- ..+..++|+||||||||+++++++++++..
T Consensus 16 ~~~p~~~~~~~g~~~~~~~l~~~l~~~-----------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~ 84 (250)
T 1njg_A 16 KWRPQTFADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 84 (250)
T ss_dssp HTCCCSGGGCCSCHHHHHHHHHHHHHT-----------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSH
T ss_pred ccCCccHHHHhCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 345567999999988777776665431 235689999999999999999999877432
Q ss_pred ------------EEEEeCccccchhhhhHHHHHHHHHHHh----hCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHH
Q 005285 232 ------------FVFASGAEFTDSEKSGAARINEMFSIAR----RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQ 295 (704)
Q Consensus 232 ------------~v~is~s~~~~~~~~g~~~vr~lF~~Ak----~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ 295 (704)
++.++... ......++.++..+. ...|.+|+|||+|.+.. ..++.|+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~----------~~~~~l~~~ 149 (250)
T 1njg_A 85 NCREIEQGRFVDLIEIDAAS-----RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR----------HSFNALLKT 149 (250)
T ss_dssp HHHHHHTTCCSSEEEEETTC-----GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH----------HHHHHHHHH
T ss_pred HHHHHhccCCcceEEecCcc-----cccHHHHHHHHHHhhhchhcCCceEEEEECcccccH----------HHHHHHHHH
Confidence 22222221 122334556665543 23579999999998732 256677777
Q ss_pred hcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHH
Q 005285 296 LDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVF 374 (704)
Q Consensus 296 ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~ 374 (704)
++... .++.+|++||.+..+++++++ |+ ..+.+++|+.++..++++.++...... ++..+..++.
T Consensus 150 l~~~~-----------~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~ 215 (250)
T 1njg_A 150 LEEPP-----------EHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLAR 215 (250)
T ss_dssp HHSCC-----------TTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHH
T ss_pred HhcCC-----------CceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 76532 237889999999999999988 76 689999999999999999887543322 2334678888
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 005285 375 RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (704)
Q Consensus 375 ~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al 412 (704)
.+.| +++.+.++++.|... +...|+.+++.+++
T Consensus 216 ~~~G-~~~~~~~~~~~~~~~----~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 216 AAEG-SLRDALSLTDQAIAS----GDGQVSTQAVSAML 248 (250)
T ss_dssp HHTT-CHHHHHHHHHHHHTT----TTSSBCHHHHHHHS
T ss_pred HcCC-CHHHHHHHHHHHHhc----cCceecHHHHHHHh
Confidence 8877 788999999887543 33479999987764
No 51
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.72 E-value=3.3e-17 Score=172.61 Aligned_cols=210 Identities=19% Similarity=0.227 Sum_probs=137.9
Q ss_pred cceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccccchhhh-
Q 005285 171 KEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKS- 246 (704)
Q Consensus 171 ~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~~~~~~- 246 (704)
++++|++.+++.+...+........+ ..++..++||+||||||||++|+++|+.+ +.+++.++|+.+......
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~---~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKD---PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSC---TTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCC---CCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence 35788988877777766543211000 12234579999999999999999999987 668999999887653210
Q ss_pred ----------hHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEE
Q 005285 247 ----------GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (704)
Q Consensus 247 ----------g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (704)
+......+.........+||||||+|.+.. ..++.|+..|+...............++++
T Consensus 94 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~----------~~~~~Ll~~le~~~~~~~~~~~~~~~~~ii 163 (311)
T 4fcw_A 94 RLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHP----------DVFNILLQMLDDGRLTDSHGRTVDFRNTVI 163 (311)
T ss_dssp HHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCH----------HHHHHHHHHHHHSEEECTTSCEEECTTEEE
T ss_pred HhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCH----------HHHHHHHHHHhcCEEEcCCCCEEECCCcEE
Confidence 000012233333444568999999998842 356777777765432211111112235789
Q ss_pred EEEcCC--------------------------CCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCC---------
Q 005285 317 ICATNR--------------------------PDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGK--------- 361 (704)
Q Consensus 317 IaaTN~--------------------------p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~--------- 361 (704)
|+|||. ...++++|++ ||+..+.+++|+.+++.+|++.++...
T Consensus 164 I~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~ 241 (311)
T 4fcw_A 164 IMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRI 241 (311)
T ss_dssp EEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTC
T ss_pred EEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 999998 4467888887 999999999999999999999876531
Q ss_pred Cc-cccccHHHHHHhcc--CCCHHHHHHHHHHHHHHH
Q 005285 362 QL-AEDVNFEELVFRTV--GFSGADIRNLVNESGIMS 395 (704)
Q Consensus 362 ~l-~~dvdl~~La~~t~--G~sgadL~~Lv~eA~~~A 395 (704)
.. ..+..+..|+.... ..+.++|.++++.+...+
T Consensus 242 ~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~ 278 (311)
T 4fcw_A 242 SLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETP 278 (311)
T ss_dssp EEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHH
T ss_pred EEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHH
Confidence 11 11223456666544 456788888888766554
No 52
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.71 E-value=6e-17 Score=175.40 Aligned_cols=212 Identities=16% Similarity=0.187 Sum_probs=150.6
Q ss_pred cccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc-----------CCCEEEEeC
Q 005285 169 MYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-----------GLPFVFASG 237 (704)
Q Consensus 169 ~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~-----------g~~~v~is~ 237 (704)
.+++++|.++..+.+...+...... ..+++++|+||||||||++|+++++++ +.++++++|
T Consensus 18 ~p~~l~gr~~~~~~l~~~l~~~~~~--------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~ 89 (384)
T 2qby_B 18 VFKEIPFREDILRDAAIAIRYFVKN--------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC 89 (384)
T ss_dssp HCSSCTTCHHHHHHHHHHHHHHHTT--------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcC--------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC
Confidence 3478999987777776665432221 356799999999999999999999987 999999998
Q ss_pred cccc-chhhh-------------------hHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHH-HHHHHHHh
Q 005285 238 AEFT-DSEKS-------------------GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRAT-FEALIAQL 296 (704)
Q Consensus 238 s~~~-~~~~~-------------------g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~-ln~LL~~l 296 (704)
.... ..... ....+..++..+.... +||||||+|.+.... . ... +..|+...
T Consensus 90 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~vlilDEi~~l~~~~---~---~~~~l~~l~~~~ 162 (384)
T 2qby_B 90 REVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIR-AIIYLDEVDTLVKRR---G---GDIVLYQLLRSD 162 (384)
T ss_dssp HHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSC-EEEEEETTHHHHHST---T---SHHHHHHHHTSS
T ss_pred ccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCC-CEEEEECHHHhccCC---C---CceeHHHHhcCC
Confidence 7654 21100 0122444455454444 499999999996431 0 122 34443322
Q ss_pred cCCcccCCccccccCccEEEEEEcCCC---CCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcC----CCccccccH
Q 005285 297 DGDKERTGIDRFSLRQAVIFICATNRP---DELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAG----KQLAEDVNF 369 (704)
Q Consensus 297 d~~~~~~~~~~~~~~~~ViVIaaTN~p---~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~----~~l~~dvdl 369 (704)
.++.+|++||.+ +.+++++++ ||...+.|++|+.+++.+|++.++.. ..+. +..+
T Consensus 163 ---------------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~ 224 (384)
T 2qby_B 163 ---------------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD-DEIL 224 (384)
T ss_dssp ---------------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC-SHHH
T ss_pred ---------------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC-HHHH
Confidence 237899999987 678999988 98889999999999999999987652 2233 3346
Q ss_pred HHHHHhccC--CCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Q 005285 370 EELVFRTVG--FSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQ 415 (704)
Q Consensus 370 ~~La~~t~G--~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al~~~ 415 (704)
..++..+.+ -..+.+.++++.|...|. +...|+.+++..++++.
T Consensus 225 ~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~ 270 (384)
T 2qby_B 225 SYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDY 270 (384)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHH
Confidence 677777662 245667788888888875 56789999999998875
No 53
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.69 E-value=6.9e-17 Score=183.45 Aligned_cols=222 Identities=19% Similarity=0.269 Sum_probs=142.2
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhC--CchhhhhcCC---ccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCc
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMG--NPMQYYERGV---QFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGA 238 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~--~p~~~~~~g~---~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s 238 (704)
+..+.+|+|++|++++++.|.+.+.... .+..|...|. ..++++||+||||||||++|+++|+++|.+++.++++
T Consensus 32 kyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s 111 (516)
T 1sxj_A 32 KYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNAS 111 (516)
T ss_dssp HTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTT
T ss_pred ccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 5567799999999987777766654211 1112222232 3678999999999999999999999999999999999
Q ss_pred cccchhh-hh-H------HHHHHHHHHH-----hhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCc
Q 005285 239 EFTDSEK-SG-A------ARINEMFSIA-----RRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGI 305 (704)
Q Consensus 239 ~~~~~~~-~g-~------~~vr~lF~~A-----k~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~ 305 (704)
++..... .. . ..++.+|..+ ....++||||||+|.+... ... .++.|+..++...
T Consensus 112 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~----~~~---~l~~L~~~l~~~~----- 179 (516)
T 1sxj_A 112 DVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGG----DRG---GVGQLAQFCRKTS----- 179 (516)
T ss_dssp SCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTT----STT---HHHHHHHHHHHCS-----
T ss_pred CcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchh----hHH---HHHHHHHHHHhcC-----
Confidence 8765421 10 0 0123344433 2356899999999999642 111 2344554444311
Q ss_pred cccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcC--CCccccccHHHHHHhccCCCHHH
Q 005285 306 DRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAG--KQLAEDVNFEELVFRTVGFSGAD 383 (704)
Q Consensus 306 ~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~--~~l~~dvdl~~La~~t~G~sgad 383 (704)
..+++|+++.....+++ +. |+...+.|++|+.+++.+++...+.. ..+.++ .+..|+..+.| |
T Consensus 180 ------~~iIli~~~~~~~~l~~-l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~-~l~~la~~s~G----d 244 (516)
T 1sxj_A 180 ------TPLILICNERNLPKMRP-FD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPN-VIDRLIQTTRG----D 244 (516)
T ss_dssp ------SCEEEEESCTTSSTTGG-GT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTT-HHHHHHHHTTT----C
T ss_pred ------CCEEEEEcCCCCccchh-hH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC----c
Confidence 12455544443344543 44 44468999999999999999876543 334433 47788887655 5
Q ss_pred HHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Q 005285 384 IRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414 (704)
Q Consensus 384 L~~Lv~eA~~~A~r~~~~~It~~dl~~Al~~ 414 (704)
++.+++.....+. +...|+.+++.+++..
T Consensus 245 iR~~i~~L~~~~~--~~~~It~~~v~~~~~~ 273 (516)
T 1sxj_A 245 IRQVINLLSTIST--TTKTINHENINEISKA 273 (516)
T ss_dssp HHHHHHHHTHHHH--HSSCCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCCCCchHHHHHHHHh
Confidence 5555555444333 3456888888777653
No 54
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.69 E-value=9.8e-16 Score=164.46 Aligned_cols=223 Identities=19% Similarity=0.190 Sum_probs=156.8
Q ss_pred CCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccchhh
Q 005285 166 TKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEK 245 (704)
Q Consensus 166 ~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~~~ 245 (704)
...+|++++|++.+++.+...+..-+.+ ...+..++|+||||||||+||+++|++++.++...++..+...
T Consensus 20 r~~~l~~~~g~~~~~~~l~~~i~~~~~~-------~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~-- 90 (334)
T 1in4_A 20 RPKSLDEFIGQENVKKKLSLALEAAKMR-------GEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ-- 90 (334)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHHHHHH-------TCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSH--
T ss_pred CCccHHHccCcHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCH--
Confidence 3458999999987777766655432211 2346789999999999999999999999999988887655432
Q ss_pred hhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCccc----CCcc--c-cccCccEEEEE
Q 005285 246 SGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKER----TGID--R-FSLRQAVIFIC 318 (704)
Q Consensus 246 ~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~----~~~~--~-~~~~~~ViVIa 318 (704)
..+..++.. ...++|+||||+|.+.. . ..+.|+..+...... .+.. . ......+.+++
T Consensus 91 ---~~l~~~~~~--~~~~~v~~iDE~~~l~~-------~---~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~ 155 (334)
T 1in4_A 91 ---GDMAAILTS--LERGDVLFIDEIHRLNK-------A---VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG 155 (334)
T ss_dssp ---HHHHHHHHH--CCTTCEEEEETGGGCCH-------H---HHHHHHHHHHTSCCCC---------------CCCEEEE
T ss_pred ---HHHHHHHHH--ccCCCEEEEcchhhcCH-------H---HHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE
Confidence 112333322 23467999999998842 1 223333333322100 0000 0 00112467788
Q ss_pred EcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 005285 319 ATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSVR 397 (704)
Q Consensus 319 aTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r 397 (704)
+|+++..|++++++ ||...+.+++|+.+++.+|++......... ++..+..++.++.| +++++.++++.+...|..
T Consensus 156 at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~~~~a~~ 232 (334)
T 1in4_A 156 ATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRVRDMLTV 232 (334)
T ss_dssp EESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHHHHHHHH
T ss_pred ecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHH
Confidence 99999999999999 998889999999999999999776543332 22346788888777 578899999999988888
Q ss_pred hCCCcccHHHHHHHHHHH
Q 005285 398 KGHSKIQQQDIVDVLDKQ 415 (704)
Q Consensus 398 ~~~~~It~~dl~~Al~~~ 415 (704)
++...|+.+++.++++..
T Consensus 233 ~~~~~It~~~v~~al~~~ 250 (334)
T 1in4_A 233 VKADRINTDIVLKTMEVL 250 (334)
T ss_dssp HTCSSBCHHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHh
Confidence 888889999999999874
No 55
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.69 E-value=5e-16 Score=167.29 Aligned_cols=222 Identities=16% Similarity=0.158 Sum_probs=154.6
Q ss_pred CccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc------CCCEEEEeCccc
Q 005285 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES------GLPFVFASGAEF 240 (704)
Q Consensus 167 ~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~------g~~~v~is~s~~ 240 (704)
...+++++|.++..+.|.+ ++.... ....+..++|+||||||||++++++++++ +.++++++|...
T Consensus 16 ~~~p~~~~gr~~e~~~l~~---~l~~~~-----~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 16 DYIPDELPHREDQIRKIAS---ILAPLY-----REEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp SCCCSCCTTCHHHHHHHHH---SSGGGG-----GTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred ccCCCCCCChHHHHHHHHH---HHHHHH-----cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 3456888998865555444 333210 01356789999999999999999999988 899999998754
Q ss_pred cchh-----------------h-hhHHHHHHHHHHHhhCC-CeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcc
Q 005285 241 TDSE-----------------K-SGAARINEMFSIARRNA-PAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKE 301 (704)
Q Consensus 241 ~~~~-----------------~-~g~~~vr~lF~~Ak~~~-P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~ 301 (704)
.... + ........++....... |+||+|||+|.+..... ...+..++..++...
T Consensus 88 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~------~~~l~~l~~~~~~~~- 160 (386)
T 2qby_A 88 DTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN------DDILYKLSRINSEVN- 160 (386)
T ss_dssp CSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC------STHHHHHHHHHHSCC-
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc------CHHHHHHhhchhhcC-
Confidence 3210 0 01222444555444433 89999999999964311 125667777765431
Q ss_pred cCCccccccCccEEEEEEcCCC---CCCcccccCCCccc-eeeeeCCCCHHHHHHHHHHHhcC----CCccccccHHHHH
Q 005285 302 RTGIDRFSLRQAVIFICATNRP---DELDLEFVRPGRID-RRLYIGLPDAKQRVQIFDVHSAG----KQLAEDVNFEELV 373 (704)
Q Consensus 302 ~~~~~~~~~~~~ViVIaaTN~p---~~LD~aLlRpgRfd-~~I~v~~Pd~~eR~~Il~~~l~~----~~l~~dvdl~~La 373 (704)
..++.+|++||.+ +.+++.+.+ ||. +.+.+++++.++..+|++.++.. ..+. +..+..++
T Consensus 161 ---------~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~l~ 228 (386)
T 2qby_A 161 ---------KSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP-DNVIKLCA 228 (386)
T ss_dssp ---------C--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC-HHHHHHHH
T ss_pred ---------CCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC-HHHHHHHH
Confidence 1247889999887 467788877 775 58999999999999999976542 2222 22356666
Q ss_pred Hhcc---CCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Q 005285 374 FRTV---GFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQL 416 (704)
Q Consensus 374 ~~t~---G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al~~~~ 416 (704)
..+. | .++.+.++++.|...|..++...|+.+++..|+....
T Consensus 229 ~~~~~~~G-~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 229 ALAAREHG-DARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp HHHHHTTC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred HHHHHhcC-CHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh
Confidence 6665 5 5677778999999998888888999999999988753
No 56
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.69 E-value=2.6e-16 Score=168.45 Aligned_cols=211 Identities=15% Similarity=0.165 Sum_probs=145.9
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcC------CCEEEEeC
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESG------LPFVFASG 237 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g------~~~v~is~ 237 (704)
+..+.+|++++|++++++.|... +... . +.++||+||||||||++|+++|++++ ..++.+++
T Consensus 30 k~~p~~~~~i~g~~~~~~~l~~~---l~~~--------~-~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 97 (353)
T 1sxj_D 30 KYRPKNLDEVTAQDHAVTVLKKT---LKSA--------N-LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNA 97 (353)
T ss_dssp HTCCSSTTTCCSCCTTHHHHHHH---TTCT--------T-CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECS
T ss_pred hcCCCCHHHhhCCHHHHHHHHHH---HhcC--------C-CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcc
Confidence 56678899999999887666554 3332 1 23499999999999999999998753 56888888
Q ss_pred ccccchhhhhHHHHHHHHHHH-------------hhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCC
Q 005285 238 AEFTDSEKSGAARINEMFSIA-------------RRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTG 304 (704)
Q Consensus 238 s~~~~~~~~g~~~vr~lF~~A-------------k~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~ 304 (704)
++...... -...+.. |... ....+.||||||+|.+.. ...+.|+..|+....
T Consensus 98 ~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~----------~~~~~Ll~~le~~~~--- 162 (353)
T 1sxj_D 98 SDERGISI-VREKVKN-FARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA----------DAQSALRRTMETYSG--- 162 (353)
T ss_dssp SSCCCHHH-HTTHHHH-HHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH----------HHHHHHHHHHHHTTT---
T ss_pred ccccchHH-HHHHHHH-HhhhcccccchhhcccCCCCCceEEEEECCCccCH----------HHHHHHHHHHHhcCC---
Confidence 77532210 0011111 1111 112457999999999843 234666666665322
Q ss_pred ccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHH
Q 005285 305 IDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGAD 383 (704)
Q Consensus 305 ~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgad 383 (704)
.+.+|++||.++.+++++++ ||. .+.+++|+.++..++++..+....+. ++..+..++..+.| ..+.
T Consensus 163 --------~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~ 230 (353)
T 1sxj_D 163 --------VTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAG-DLRR 230 (353)
T ss_dssp --------TEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS-CHHH
T ss_pred --------CceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHH
Confidence 25677788999999999998 885 79999999999999999877544322 23347788888776 4666
Q ss_pred HHHHHHHHHHHHHHhCCC-cccHHHHHHHHH
Q 005285 384 IRNLVNESGIMSVRKGHS-KIQQQDIVDVLD 413 (704)
Q Consensus 384 L~~Lv~eA~~~A~r~~~~-~It~~dl~~Al~ 413 (704)
+.++++.++..+.+.+.. .|+.+++.+++.
T Consensus 231 ~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 231 GITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 777777777766554433 699999876654
No 57
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.68 E-value=4.2e-17 Score=157.41 Aligned_cols=157 Identities=15% Similarity=0.271 Sum_probs=111.3
Q ss_pred CccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc----------CCCEEEEe
Q 005285 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES----------GLPFVFAS 236 (704)
Q Consensus 167 ~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~----------g~~~v~is 236 (704)
+.+|++++|.++. ++.+...+.. ..+.+++|+||||||||++|+++++++ +.+++.++
T Consensus 18 ~~~~~~~~g~~~~---~~~l~~~l~~---------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (195)
T 1jbk_A 18 QGKLDPVIGRDEE---IRRTIQVLQR---------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 85 (195)
T ss_dssp TTCSCCCCSCHHH---HHHHHHHHTS---------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEEC
T ss_pred hccccccccchHH---HHHHHHHHhc---------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEee
Confidence 4578999998864 4444445444 246789999999999999999999986 78999999
Q ss_pred Cccccch---hhhhHHHHHHHHHHHh-hCCCeEEEEccchhhhccCCC-CChhHHHHHHHHHHHhcCCcccCCccccccC
Q 005285 237 GAEFTDS---EKSGAARINEMFSIAR-RNAPAFVFVDEIDAIAGRHAR-KDPRRRATFEALIAQLDGDKERTGIDRFSLR 311 (704)
Q Consensus 237 ~s~~~~~---~~~g~~~vr~lF~~Ak-~~~P~ILfIDEiDal~~~~~~-~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~ 311 (704)
+..+... .+.....++.++..+. ...++||||||+|.+...+.. ........+..++ +.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~---~~------------- 149 (195)
T 1jbk_A 86 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL---AR------------- 149 (195)
T ss_dssp HHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHH---HT-------------
T ss_pred HHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhh---cc-------------
Confidence 8877532 3344556777777654 456899999999999643211 1111122233332 22
Q ss_pred ccEEEEEEcCCCC-----CCcccccCCCccceeeeeCCCCHHHHHHHH
Q 005285 312 QAVIFICATNRPD-----ELDLEFVRPGRIDRRLYIGLPDAKQRVQIF 354 (704)
Q Consensus 312 ~~ViVIaaTN~p~-----~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il 354 (704)
.++.+|++||.++ .+++++++ ||+ .+.++.|+.+++.+||
T Consensus 150 ~~~~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 150 GELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp TSCCEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred CCeEEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 1267888888876 78999999 998 6999999999999875
No 58
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.68 E-value=9.2e-16 Score=165.94 Aligned_cols=221 Identities=14% Similarity=0.101 Sum_probs=154.6
Q ss_pred ccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCc--eEEEEcCCCChHHHHHHHHHHHc----CCCEEEEeCcccc
Q 005285 168 SMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVR--GVLLSGPPGTGKTLFARTLAKES----GLPFVFASGAEFT 241 (704)
Q Consensus 168 ~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~--gvLL~GPPGTGKT~LAraiA~e~----g~~~v~is~s~~~ 241 (704)
..+++++|.++..+.+...+...... ..+. .++|+||||||||++++++++.+ +.++++++|....
T Consensus 14 ~~p~~l~gr~~~~~~l~~~l~~~~~~--------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~ 85 (389)
T 1fnn_A 14 YVPKRLPHREQQLQQLDILLGNWLRN--------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR 85 (389)
T ss_dssp CCCSCCTTCHHHHHHHHHHHHHHHHS--------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCC
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcC--------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCC
Confidence 34578999987766666655432111 1234 89999999999999999999988 6789999987654
Q ss_pred chhh---h---------------hHHHHHHHHHHHh-hCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCccc
Q 005285 242 DSEK---S---------------GAARINEMFSIAR-RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKER 302 (704)
Q Consensus 242 ~~~~---~---------------g~~~vr~lF~~Ak-~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~ 302 (704)
.... . .......+..... ...|.||||||+|.+. ...++.|+..++.....
T Consensus 86 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~----------~~~~~~L~~~~~~~~~~ 155 (389)
T 1fnn_A 86 NFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA----------PDILSTFIRLGQEADKL 155 (389)
T ss_dssp SHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC----------HHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc----------hHHHHHHHHHHHhCCCC
Confidence 3110 0 1111222222222 2458999999999882 23566677666542210
Q ss_pred CCccccccCccEEEEEEcCCC---CCCcccccCCCccce-eeeeCCCCHHHHHHHHHHHhcC---CCccccccHHHHHHh
Q 005285 303 TGIDRFSLRQAVIFICATNRP---DELDLEFVRPGRIDR-RLYIGLPDAKQRVQIFDVHSAG---KQLAEDVNFEELVFR 375 (704)
Q Consensus 303 ~~~~~~~~~~~ViVIaaTN~p---~~LD~aLlRpgRfd~-~I~v~~Pd~~eR~~Il~~~l~~---~~l~~dvdl~~La~~ 375 (704)
...++.+|++||.+ +.+++.+.+ ||.. .+.+++++.++..++++..+.. .....+..+..++..
T Consensus 156 -------~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 226 (389)
T 1fnn_A 156 -------GAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADI 226 (389)
T ss_dssp -------SSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHH
T ss_pred -------CcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Confidence 01247889999988 667888877 8864 8999999999999999877653 112233356778888
Q ss_pred cc--------CCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Q 005285 376 TV--------GFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQ 415 (704)
Q Consensus 376 t~--------G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al~~~ 415 (704)
+. +-..+.+.++++.|...|..++...|+.+++..++...
T Consensus 227 ~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~ 274 (389)
T 1fnn_A 227 TGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEV 274 (389)
T ss_dssp HSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred HhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Confidence 83 22577889999999999988888899999999998765
No 59
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.68 E-value=7.1e-16 Score=182.83 Aligned_cols=220 Identities=17% Similarity=0.191 Sum_probs=154.5
Q ss_pred CCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc----------CCCEEEE
Q 005285 166 TKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES----------GLPFVFA 235 (704)
Q Consensus 166 ~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~----------g~~~v~i 235 (704)
.+.+|++++|.++.. +.++..+... .+.++||+||||||||++|+++|..+ +..++.+
T Consensus 181 ~~~~~d~~iGr~~~i---~~l~~~l~~~---------~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~ 248 (758)
T 1r6b_X 181 RVGGIDPLIGREKEL---ERAIQVLCRR---------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_dssp HTTCSCCCCSCHHHH---HHHHHHHTSS---------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEEC
T ss_pred hcCCCCCccCCHHHH---HHHHHHHhcc---------CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEE
Confidence 345799999998544 4444454433 46789999999999999999999876 6678888
Q ss_pred eCccccch---hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCc
Q 005285 236 SGAEFTDS---EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQ 312 (704)
Q Consensus 236 s~s~~~~~---~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~ 312 (704)
+++.+... .+....+++.+|..+....++||||||+|.+.+.+.... ......+.|...++ . .
T Consensus 249 ~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~-~~~~~~~~L~~~l~----~---------~ 314 (758)
T 1r6b_X 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASG-GQVDAANLIKPLLS----S---------G 314 (758)
T ss_dssp CCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSS-CHHHHHHHHSSCSS----S---------C
T ss_pred cHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCc-chHHHHHHHHHHHh----C---------C
Confidence 87777632 355677899999999888899999999999976533211 11222222222221 1 2
Q ss_pred cEEEEEEcCCCC-----CCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcC------CCccccccHHHHHHhccC---
Q 005285 313 AVIFICATNRPD-----ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAG------KQLAEDVNFEELVFRTVG--- 378 (704)
Q Consensus 313 ~ViVIaaTN~p~-----~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~------~~l~~dvdl~~La~~t~G--- 378 (704)
.+.+|++||.++ .+|++|.| ||+ .+.|+.|+.+++.+||+.+... ..+. +..+..++..+.+
T Consensus 315 ~~~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~-~~al~~~~~~s~~~i~ 390 (758)
T 1r6b_X 315 KIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYT-AKAVRAAVELAVKYIN 390 (758)
T ss_dssp CCEEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHHHHCT
T ss_pred CeEEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHhhhhcc
Confidence 378899988653 57899999 997 6999999999999999876542 2222 2234555555443
Q ss_pred --CCHHHHHHHHHHHHHHHHH----hCCCcccHHHHHHHHHHH
Q 005285 379 --FSGADIRNLVNESGIMSVR----KGHSKIQQQDIVDVLDKQ 415 (704)
Q Consensus 379 --~sgadL~~Lv~eA~~~A~r----~~~~~It~~dl~~Al~~~ 415 (704)
+.+..+..++++|+..+.. .+...|+.+|+.+++.+.
T Consensus 391 ~~~lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~ 433 (758)
T 1r6b_X 391 DRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARI 433 (758)
T ss_dssp TSCTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHH
T ss_pred cccCchHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHh
Confidence 5667888899988876654 245679999999999875
No 60
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.67 E-value=4.2e-16 Score=169.60 Aligned_cols=236 Identities=19% Similarity=0.247 Sum_probs=142.3
Q ss_pred ceecCcccHHHHHHHHH-HhCCchhh-----------------hhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEE
Q 005285 172 EVVLGGDVWDLLDELMI-YMGNPMQY-----------------YERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFV 233 (704)
Q Consensus 172 dVvG~~~~k~~L~elv~-~l~~p~~~-----------------~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v 233 (704)
+|+|++++|+.|...+. .++..... .......+.++||+||||||||++|+++|+.++.+|+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 58999999998887662 11111100 0112345678999999999999999999999999999
Q ss_pred EEeCccccchh--hhh-HHHHHHHHHHHh----hCCCeEEEEccchhhhccCCCC----ChhHHHHHHHHHHHhcCCcc-
Q 005285 234 FASGAEFTDSE--KSG-AARINEMFSIAR----RNAPAFVFVDEIDAIAGRHARK----DPRRRATFEALIAQLDGDKE- 301 (704)
Q Consensus 234 ~is~s~~~~~~--~~g-~~~vr~lF~~Ak----~~~P~ILfIDEiDal~~~~~~~----~~e~~~~ln~LL~~ld~~~~- 301 (704)
.++|..+.... +.. ...+..+|..+. ...++||||||+|.+...+.+. +......++.|+..|++...
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 99999886432 221 233555555432 2357899999999997543211 11223367888888886421
Q ss_pred --cCCcc-------ccccCccEEEEEEcCCCCC------------------------------------------Ccccc
Q 005285 302 --RTGID-------RFSLRQAVIFICATNRPDE------------------------------------------LDLEF 330 (704)
Q Consensus 302 --~~~~~-------~~~~~~~ViVIaaTN~p~~------------------------------------------LD~aL 330 (704)
..+.. ......++++|++||. +. +.|+|
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~-~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l 260 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGAF-DGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPEL 260 (376)
T ss_dssp ---------------CEECTTCEEEEEECC-TTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHH
T ss_pred cccccccccCCcceEEEecCCeEEEecCCH-HHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHH
Confidence 00000 0011245678888772 22 34555
Q ss_pred cCCCccceeeeeCCCCHHHHHHHHHH----H-------h--cCCCcc-ccccHHHHHHhcc--CCCHHHHHHHHHHHHHH
Q 005285 331 VRPGRIDRRLYIGLPDAKQRVQIFDV----H-------S--AGKQLA-EDVNFEELVFRTV--GFSGADIRNLVNESGIM 394 (704)
Q Consensus 331 lRpgRfd~~I~v~~Pd~~eR~~Il~~----~-------l--~~~~l~-~dvdl~~La~~t~--G~sgadL~~Lv~eA~~~ 394 (704)
++ ||+..+.|++++.++..+|+.. . + .+..+. .+..+..|+.... ....+.|.++++.+...
T Consensus 261 ~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~ 338 (376)
T 1um8_A 261 IG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLD 338 (376)
T ss_dssp HT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHH
T ss_pred hc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHH
Confidence 55 8888999999999999999862 1 1 111111 1223556666533 34678889988888776
Q ss_pred HHHhCC------CcccHHHHHH
Q 005285 395 SVRKGH------SKIQQQDIVD 410 (704)
Q Consensus 395 A~r~~~------~~It~~dl~~ 410 (704)
+..+.. ..|+.+++.+
T Consensus 339 ~~~~~~~~~~~~~~i~~~~v~~ 360 (376)
T 1um8_A 339 IMFDLPKLKGSEVRITKDCVLK 360 (376)
T ss_dssp HHHTGGGGTTSEEEECHHHHTT
T ss_pred HHhhccCCCCCEEEEeHHHhcC
Confidence 554322 2477777654
No 61
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.65 E-value=5.5e-16 Score=183.88 Aligned_cols=171 Identities=19% Similarity=0.240 Sum_probs=120.3
Q ss_pred ccceecCcccHHHHHHHHHHhCCchhhhhcCCccCc-eEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccccchhh
Q 005285 170 YKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVR-GVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEK 245 (704)
Q Consensus 170 f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~-gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~~~~~ 245 (704)
.++|+|++++++.+...+...+..... ...|. ++||+||||||||++|+++|..+ +.+|+.++|+++.+...
T Consensus 490 ~~~viGq~~a~~~l~~~i~~~~~~~~~----~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~ 565 (758)
T 3pxi_A 490 HSRVIGQDEAVVAVAKAVRRARAGLKD----PKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHS 565 (758)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHTTTCSC----TTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCC
T ss_pred hCcCcChHHHHHHHHHHHHHHHcccCC----CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccc
Confidence 356889998888777777654422110 11233 69999999999999999999987 78999999999988642
Q ss_pred hhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCC
Q 005285 246 SGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDE 325 (704)
Q Consensus 246 ~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~ 325 (704)
.. ...++...+...++||||||||.+. ...++.|+..|+...............++++|+|||.+..
T Consensus 566 ~~---~~~l~~~~~~~~~~vl~lDEi~~~~----------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~ 632 (758)
T 3pxi_A 566 TS---GGQLTEKVRRKPYSVVLLDAIEKAH----------PDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGAS 632 (758)
T ss_dssp CC------CHHHHHHCSSSEEEEECGGGSC----------HHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTT
T ss_pred cc---cchhhHHHHhCCCeEEEEeCccccC----------HHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChh
Confidence 22 2233344455667899999999883 2367777877776432222222233456899999997554
Q ss_pred ------------CcccccCCCccceeeeeCCCCHHHHHHHHHHHhc
Q 005285 326 ------------LDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA 359 (704)
Q Consensus 326 ------------LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~ 359 (704)
++|+|++ |||..|.|++|+.+++.+|++.++.
T Consensus 633 ~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~ 676 (758)
T 3pxi_A 633 EKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSD 676 (758)
T ss_dssp CCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHH
Confidence 6788887 9999999999999999999987764
No 62
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.65 E-value=4.8e-16 Score=174.52 Aligned_cols=207 Identities=18% Similarity=0.212 Sum_probs=136.9
Q ss_pred CCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc----------CCCEEE
Q 005285 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES----------GLPFVF 234 (704)
Q Consensus 165 ~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~----------g~~~v~ 234 (704)
..+.+|++|+|.++..+.+.. .+... .+.++||+||||||||++|+++|..+ +.+|+.
T Consensus 174 ~r~~~ld~iiGr~~~i~~l~~---~l~r~---------~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 241 (468)
T 3pxg_A 174 AKEDSLDPVIGRSKEIQRVIE---VLSRR---------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT 241 (468)
T ss_dssp TTSSCSCCCCCCHHHHHHHHH---HHHCS---------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC
T ss_pred HhcCCCCCccCcHHHHHHHHH---HHhcc---------CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE
Confidence 345689999999865554444 44332 34689999999999999999999986 888999
Q ss_pred EeCccccchhhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccE
Q 005285 235 ASGAEFTDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAV 314 (704)
Q Consensus 235 is~s~~~~~~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~V 314 (704)
++++ ....+....+++.+|..+....|+||||| +. ....+.|+..|+. ..+
T Consensus 242 l~~~--~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~~---------~~a~~~L~~~L~~-------------g~v 292 (468)
T 3pxg_A 242 LDMG--TKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA---------IDASNILKPSLAR-------------GEL 292 (468)
T ss_dssp C------------CTTHHHHHHHHHTCCCCEEEEC-----C-----------------CCCTTS-------------SSC
T ss_pred eeCC--ccccchHHHHHHHHHHHHHhcCCeEEEEe-----Cc---------hhHHHHHHHhhcC-------------CCE
Confidence 9887 22234455678999999998889999999 11 1123444444432 237
Q ss_pred EEEEEcCCCC-----CCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCC----c-cccccHHHHHHhccCC-----
Q 005285 315 IFICATNRPD-----ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQ----L-AEDVNFEELVFRTVGF----- 379 (704)
Q Consensus 315 iVIaaTN~p~-----~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~----l-~~dvdl~~La~~t~G~----- 379 (704)
.+|++||.++ .+|++++| ||. .|.|+.|+.+++.+||+.++.... . ..+..+..++..+.++
T Consensus 293 ~vI~at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~ 369 (468)
T 3pxg_A 293 QCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRF 369 (468)
T ss_dssp EEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSC
T ss_pred EEEecCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCc
Confidence 9999999987 68999999 997 599999999999999998765421 1 1223355565554443
Q ss_pred CHHHHHHHHHHHHHHHHHhCCC-cccHHHHHHHHHHH
Q 005285 380 SGADIRNLVNESGIMSVRKGHS-KIQQQDIVDVLDKQ 415 (704)
Q Consensus 380 sgadL~~Lv~eA~~~A~r~~~~-~It~~dl~~Al~~~ 415 (704)
.+...-.++.+|+..+..+... .-...++...+++.
T Consensus 370 lp~~ai~ll~~a~~~~~~~~~~~p~~i~~l~~~i~~l 406 (468)
T 3pxg_A 370 LPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEV 406 (468)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTSCCSSTHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 4557778888888766554432 23444555555543
No 63
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.64 E-value=8.1e-16 Score=182.34 Aligned_cols=170 Identities=20% Similarity=0.255 Sum_probs=122.5
Q ss_pred cceecCcccHHHHHHHHHHhCCchhhhhcCC----ccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccchh--
Q 005285 171 KEVVLGGDVWDLLDELMIYMGNPMQYYERGV----QFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE-- 244 (704)
Q Consensus 171 ~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~----~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~~-- 244 (704)
++|+|++++++.+...+...+ .|. ++..++||+||||||||++|+++|..++.+++.++|+++.+..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~-------~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~ 530 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMAR-------AGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHH-------TTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCC
T ss_pred hhccCHHHHHHHHHHHHHHHh-------cccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhH
Confidence 357888887777766654432 222 2334799999999999999999999999999999999986530
Q ss_pred ---------hhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEE
Q 005285 245 ---------KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVI 315 (704)
Q Consensus 245 ---------~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~Vi 315 (704)
..+......+....+...++||||||||.+. ...++.|+..|+......+........+++
T Consensus 531 ~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~----------~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~ 600 (758)
T 1r6b_X 531 SRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH----------PDVFNILLQVMDNGTLTDNNGRKADFRNVV 600 (758)
T ss_dssp SSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSC----------HHHHHHHHHHHHHSEEEETTTEEEECTTEE
T ss_pred hhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCccccC----------HHHHHHHHHHhcCcEEEcCCCCEEecCCeE
Confidence 1222222334455555667999999999873 236788888887532211111112224689
Q ss_pred EEEEcCCCC-------------------------CCcccccCCCccceeeeeCCCCHHHHHHHHHHHhc
Q 005285 316 FICATNRPD-------------------------ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA 359 (704)
Q Consensus 316 VIaaTN~p~-------------------------~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~ 359 (704)
||+|||.+. .++|+|++ |||..|.|++|+.+++.+|++.++.
T Consensus 601 iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~ 667 (758)
T 1r6b_X 601 LVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_dssp EEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred EEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHH
Confidence 999999854 57788888 9999999999999999999998775
No 64
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.64 E-value=6.1e-16 Score=162.77 Aligned_cols=207 Identities=18% Similarity=0.193 Sum_probs=139.4
Q ss_pred ccCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc-----CCCEEEEeC
Q 005285 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-----GLPFVFASG 237 (704)
Q Consensus 163 ~~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~-----g~~~v~is~ 237 (704)
++..+.+|++++|++++++.|... ++.. ..| ++||+||||||||++|+++|+++ +.+++.+++
T Consensus 9 ~k~~p~~~~~~~g~~~~~~~l~~~---l~~~--------~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 76 (319)
T 2chq_A 9 EKYRPRTLDEVVGQDEVIQRLKGY---VERK--------NIP-HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (319)
T ss_dssp TTTSCSSGGGSCSCHHHHHHHHTT---TTTT--------CCC-CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEET
T ss_pred HhcCCCCHHHHhCCHHHHHHHHHH---HhCC--------CCC-eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeC
Confidence 356678899999999776665543 3322 233 39999999999999999999986 456888888
Q ss_pred ccccchhhhhHHHHHHHHHHH-h-hCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEE
Q 005285 238 AEFTDSEKSGAARINEMFSIA-R-RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVI 315 (704)
Q Consensus 238 s~~~~~~~~g~~~vr~lF~~A-k-~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~Vi 315 (704)
++..... .....+....... . ...+.||+|||+|.+.. ...+.|+..++... .+++
T Consensus 77 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~----------~~~~~L~~~le~~~-----------~~~~ 134 (319)
T 2chq_A 77 SDERGID-VVRHKIKEFARTAPIGGAPFKIIFLDEADALTA----------DAQAALRRTMEMYS-----------KSCR 134 (319)
T ss_dssp TSTTCTT-TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH----------HHHHTTGGGTSSSS-----------SSEE
T ss_pred ccccChH-HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH----------HHHHHHHHHHHhcC-----------CCCe
Confidence 7753321 1111122221111 1 13478999999999842 23556666665422 2478
Q ss_pred EEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHH
Q 005285 316 FICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIM 394 (704)
Q Consensus 316 VIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~Lv~eA~~~ 394 (704)
+|++||.+..+++++.+ ||. .+.+++|+.+++.+++..++...... ++..+..++..+.| ..+.+.++++.++..
T Consensus 135 ~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~~~~ 210 (319)
T 2chq_A 135 FILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAI 210 (319)
T ss_dssp EEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHHHHS
T ss_pred EEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHc
Confidence 89999999999999998 885 89999999999999999887654432 22346677766555 445555555544321
Q ss_pred HHHhCCCcccHHHHHHHH
Q 005285 395 SVRKGHSKIQQQDIVDVL 412 (704)
Q Consensus 395 A~r~~~~~It~~dl~~Al 412 (704)
...|+.+++.+++
T Consensus 211 -----~~~i~~~~v~~~~ 223 (319)
T 2chq_A 211 -----GEVVDADTIYQIT 223 (319)
T ss_dssp -----SSCBCHHHHHHHT
T ss_pred -----CCCCCHHHHHHHH
Confidence 3468888876554
No 65
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.63 E-value=5.5e-16 Score=165.08 Aligned_cols=137 Identities=7% Similarity=0.129 Sum_probs=102.3
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHc----------CCCEEEEeCccccchh-----------------hhhHHHHHHH
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKES----------GLPFVFASGAEFTDSE-----------------KSGAARINEM 254 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~----------g~~~v~is~s~~~~~~-----------------~~g~~~vr~l 254 (704)
..|.+++|+||||||||++++++++++ ++.+++++|..+.... +.....++..
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~ 122 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFY 122 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 468899999999999999999999987 4578999998765421 1123457788
Q ss_pred HHHH--hhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCC----Ccc
Q 005285 255 FSIA--RRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDE----LDL 328 (704)
Q Consensus 255 F~~A--k~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~----LD~ 328 (704)
|... ....++||||||+|.+. . ...+..|+..... . ...++||+++|..+. |++
T Consensus 123 f~~~~~~~~~~~ii~lDE~d~l~-~--------q~~L~~l~~~~~~-~----------~s~~~vI~i~n~~d~~~~~L~~ 182 (318)
T 3te6_A 123 ITNVPKAKKRKTLILIQNPENLL-S--------EKILQYFEKWISS-K----------NSKLSIICVGGHNVTIREQINI 182 (318)
T ss_dssp HHHSCGGGSCEEEEEEECCSSSC-C--------THHHHHHHHHHHC-S----------SCCEEEEEECCSSCCCHHHHHT
T ss_pred HHHhhhccCCceEEEEecHHHhh-c--------chHHHHHHhcccc-c----------CCcEEEEEEecCcccchhhcch
Confidence 8875 35668999999999996 1 2356666654322 1 123899999998765 455
Q ss_pred cccCCCccc-eeeeeCCCCHHHHHHHHHHHhcC
Q 005285 329 EFVRPGRID-RRLYIGLPDAKQRVQIFDVHSAG 360 (704)
Q Consensus 329 aLlRpgRfd-~~I~v~~Pd~~eR~~Il~~~l~~ 360 (704)
++++ ||. +.|.|++++.++..+|++..+..
T Consensus 183 ~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 183 MPSL--KAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp CHHH--HTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred hhhc--cCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 6666 886 68999999999999999987754
No 66
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.62 E-value=6.3e-15 Score=158.79 Aligned_cols=204 Identities=20% Similarity=0.262 Sum_probs=146.3
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC------------
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP------------ 231 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~------------ 231 (704)
+..+.+|++++|++++.+.|...+.. .+.+..+||+||||||||++|+++|+.++..
T Consensus 9 k~rp~~~~~~vg~~~~~~~L~~~l~~-----------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 77 (373)
T 1jr3_A 9 KWRPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 (373)
T ss_dssp HTCCCSTTTSCSCHHHHHHHHHHHHH-----------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSH
T ss_pred hhCCCchhhccCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccH
Confidence 44567899999999887777766542 1345689999999999999999999987542
Q ss_pred ------------EEEEeCccccchhhhhHHHHHHHHHHHhh----CCCeEEEEccchhhhccCCCCChhHHHHHHHHHHH
Q 005285 232 ------------FVFASGAEFTDSEKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQ 295 (704)
Q Consensus 232 ------------~v~is~s~~~~~~~~g~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ 295 (704)
++.+++.. ..+...++.++..+.. ..+.||+|||+|.+.. ...+.|+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~----------~~~~~Ll~~ 142 (373)
T 1jr3_A 78 NCREIEQGRFVDLIEIDAAS-----RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR----------HSFNALLKT 142 (373)
T ss_dssp HHHHHHTSCCSSCEEEETTC-----SCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCH----------HHHHHHHHH
T ss_pred HHHHHhccCCCceEEecccc-----cCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcH----------HHHHHHHHH
Confidence 23333221 0122346667766653 3478999999998842 356778887
Q ss_pred hcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHH
Q 005285 296 LDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVF 374 (704)
Q Consensus 296 ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~ 374 (704)
++... .++++|++||.+..+++++++ |+ ..+.+++|+.++..++++.++...... ++..+..++.
T Consensus 143 le~~~-----------~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~ 208 (373)
T 1jr3_A 143 LEEPP-----------EHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLAR 208 (373)
T ss_dssp HHSCC-----------SSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHH
T ss_pred HhcCC-----------CceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 76532 237888889999999999988 87 689999999999999999877543322 2223677888
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 005285 375 RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (704)
Q Consensus 375 ~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al 412 (704)
.+.| +.+++.++++.+...+ ...|+.+++.+++
T Consensus 209 ~~~G-~~r~~~~~l~~~~~~~----~~~i~~~~v~~~~ 241 (373)
T 1jr3_A 209 AAEG-SLRDALSLTDQAIASG----DGQVSTQAVSAML 241 (373)
T ss_dssp HSSS-CHHHHHHHHHHHHHHT----TTCBCHHHHHHHT
T ss_pred HCCC-CHHHHHHHHHHHHHhc----CCcccHHHHHHHh
Confidence 8766 6888888888776443 3568988886654
No 67
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.62 E-value=7.7e-16 Score=173.64 Aligned_cols=210 Identities=19% Similarity=0.189 Sum_probs=133.6
Q ss_pred ceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcC--CCEEEEeCccccch--hh--
Q 005285 172 EVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESG--LPFVFASGAEFTDS--EK-- 245 (704)
Q Consensus 172 dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g--~~~v~is~s~~~~~--~~-- 245 (704)
.|+|++++++.+...+. ...+|||+||||||||++|+++|..++ .+|..+++.-.... .+
T Consensus 23 ~ivGq~~~i~~l~~al~--------------~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~ 88 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAAL--------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 88 (500)
T ss_dssp TCSSCHHHHHHHHHHHH--------------HTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCB
T ss_pred hhHHHHHHHHHHHHHHh--------------cCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcc
Confidence 46788876655443321 134799999999999999999999884 46666666421111 11
Q ss_pred hhHH-HHHHHHHHHhhC---CCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcC
Q 005285 246 SGAA-RINEMFSIARRN---APAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATN 321 (704)
Q Consensus 246 ~g~~-~vr~lF~~Ak~~---~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN 321 (704)
.+.. .-...|..+... .++|||||||+.+. ..+.+.|+..|+................ ++|+|||
T Consensus 89 ~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~----------~~~q~~LL~~lee~~v~i~G~~~~~~~~-~iI~ATN 157 (500)
T 3nbx_X 89 SIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAG----------PAILNTLLTAINERQFRNGAHVEKIPMR-LLVAASN 157 (500)
T ss_dssp C----------CBCCTTSGGGCSEEEEESGGGCC----------HHHHHHHHHHHHSSEEECSSSEEECCCC-EEEEEES
T ss_pred cHHHHhhchhHHhhhccCCCcceeeeHHhHhhhc----------HHHHHHHHHHHHHHhccCCCCcCCcchh-hhhhccc
Confidence 1111 112233323222 46899999998763 2367888888875433222111222233 4677777
Q ss_pred CCCC---CcccccCCCccceeeeeCCCCH-HHHHHHHHHHhcC-------------------------CCccccccHHHH
Q 005285 322 RPDE---LDLEFVRPGRIDRRLYIGLPDA-KQRVQIFDVHSAG-------------------------KQLAEDVNFEEL 372 (704)
Q Consensus 322 ~p~~---LD~aLlRpgRfd~~I~v~~Pd~-~eR~~Il~~~l~~-------------------------~~l~~dvdl~~L 372 (704)
.+.. +.+++++ ||...+.++.|+. +++.+|++.+... ..+.+++ ++.+
T Consensus 158 ~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v-~e~i 234 (500)
T 3nbx_X 158 ELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHV-FELI 234 (500)
T ss_dssp SCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHH-HHHH
T ss_pred cCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHH-HHHH
Confidence 5322 3458888 9999999999987 7889998865421 1111111 2333
Q ss_pred HHh---------ccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHH
Q 005285 373 VFR---------TVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIV 409 (704)
Q Consensus 373 a~~---------t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~ 409 (704)
+.. ..|.|++.+..+++.|...|..+++..|+.+|+.
T Consensus 235 ~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~ 280 (500)
T 3nbx_X 235 FMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI 280 (500)
T ss_dssp HHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG
T ss_pred HHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH
Confidence 332 2588999999999999999999999999999987
No 68
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.62 E-value=7.9e-15 Score=154.80 Aligned_cols=202 Identities=18% Similarity=0.208 Sum_probs=139.4
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcC-----CCEEEEeCc
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESG-----LPFVFASGA 238 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g-----~~~v~is~s 238 (704)
+..+.+|++++|++++++.|...+.. . . +.++||+||||||||++|+++|+.++ .+++.++++
T Consensus 18 k~~p~~~~~~~g~~~~~~~l~~~l~~---~--------~-~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~ 85 (327)
T 1iqp_A 18 KYRPQRLDDIVGQEHIVKRLKHYVKT---G--------S-MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNAS 85 (327)
T ss_dssp HTCCCSTTTCCSCHHHHHHHHHHHHH---T--------C-CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETT
T ss_pred ccCCCCHHHhhCCHHHHHHHHHHHHc---C--------C-CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeecc
Confidence 45677899999999888777766543 1 1 22499999999999999999999863 357888876
Q ss_pred cccchhhhhHHHHHHHHHH-Hh-----hCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCc
Q 005285 239 EFTDSEKSGAARINEMFSI-AR-----RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQ 312 (704)
Q Consensus 239 ~~~~~~~~g~~~vr~lF~~-Ak-----~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~ 312 (704)
+.... ..++..+.. +. ...+.||+|||+|.+.. ...+.|+..++... .
T Consensus 86 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~----------~~~~~L~~~le~~~-----------~ 139 (327)
T 1iqp_A 86 DERGI-----NVIREKVKEFARTKPIGGASFKIIFLDEADALTQ----------DAQQALRRTMEMFS-----------S 139 (327)
T ss_dssp CHHHH-----HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH----------HHHHHHHHHHHHTT-----------T
T ss_pred ccCch-----HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH----------HHHHHHHHHHHhcC-----------C
Confidence 54221 112222111 11 14578999999998842 24566777766532 2
Q ss_pred cEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHH
Q 005285 313 AVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNES 391 (704)
Q Consensus 313 ~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~Lv~eA 391 (704)
++.+|++||.++.+++++.+ |+. .+.+++|+.++..++++..+...... ++..+..++..+.| +.+.+.++++.+
T Consensus 140 ~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~ 215 (327)
T 1iqp_A 140 NVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAA 215 (327)
T ss_dssp TEEEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred CCeEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 36888899999999999988 886 78999999999999999887654432 23346777877655 556666666544
Q ss_pred HHHHHHhCCCcccHHHHHHHH
Q 005285 392 GIMSVRKGHSKIQQQDIVDVL 412 (704)
Q Consensus 392 ~~~A~r~~~~~It~~dl~~Al 412 (704)
+. ....|+.+++..++
T Consensus 216 ~~-----~~~~i~~~~v~~~~ 231 (327)
T 1iqp_A 216 AA-----LDKKITDENVFMVA 231 (327)
T ss_dssp HT-----TCSEECHHHHHHHT
T ss_pred Hh-----cCCCCCHHHHHHHH
Confidence 42 22368887776544
No 69
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.62 E-value=4.7e-15 Score=156.26 Aligned_cols=203 Identities=14% Similarity=0.172 Sum_probs=141.1
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc-----CCCEEEEeCc
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-----GLPFVFASGA 238 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~-----g~~~v~is~s 238 (704)
+..+.+|++++|++++++.|...+. .. ..|. +||+||||||||++|+++|+++ +.+++.++++
T Consensus 14 ~~~p~~~~~~~g~~~~~~~l~~~l~---~~--------~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 81 (323)
T 1sxj_B 14 KYRPQVLSDIVGNKETIDRLQQIAK---DG--------NMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNAS 81 (323)
T ss_dssp HTCCSSGGGCCSCTHHHHHHHHHHH---SC--------CCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTT
T ss_pred hcCCCCHHHHHCCHHHHHHHHHHHH---cC--------CCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCc
Confidence 4556789999999987776666543 21 2344 9999999999999999999985 4568888877
Q ss_pred cccchhhhhHHHHHHHHHHHh-------hCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccC
Q 005285 239 EFTDSEKSGAARINEMFSIAR-------RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLR 311 (704)
Q Consensus 239 ~~~~~~~~g~~~vr~lF~~Ak-------~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~ 311 (704)
+... ...++.++.... ...++||+|||+|.+.. ...+.|+..++...
T Consensus 82 ~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~----------~~~~~L~~~le~~~----------- 135 (323)
T 1sxj_B 82 DDRG-----IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA----------GAQQALRRTMELYS----------- 135 (323)
T ss_dssp SCCS-----HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH----------HHHHTTHHHHHHTT-----------
T ss_pred cccC-----hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH----------HHHHHHHHHHhccC-----------
Confidence 6432 223444444433 23478999999999842 23455666665422
Q ss_pred ccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHH
Q 005285 312 QAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNE 390 (704)
Q Consensus 312 ~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~Lv~e 390 (704)
.++++|++||.+..+++++.+ |+. .+.+++|+.+++.++++.++...... ++..+..++..+.| +.+.+.++++.
T Consensus 136 ~~~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~a~~~l~~ 211 (323)
T 1sxj_B 136 NSTRFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMRQAINNLQS 211 (323)
T ss_dssp TTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred CCceEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 236788889999999999998 875 89999999999999999876533222 22346778887766 45555566655
Q ss_pred HHHHHHHhCCCcccHHHHHHHHH
Q 005285 391 SGIMSVRKGHSKIQQQDIVDVLD 413 (704)
Q Consensus 391 A~~~A~r~~~~~It~~dl~~Al~ 413 (704)
++.. . ..|+.+++.+++.
T Consensus 212 ~~~~---~--~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 212 TVAG---H--GLVNADNVFKIVD 229 (323)
T ss_dssp HHHH---H--SSBCHHHHHHHHT
T ss_pred HHhc---C--CCcCHHHHHHHHC
Confidence 4422 1 4588888776653
No 70
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.61 E-value=1.6e-15 Score=182.23 Aligned_cols=202 Identities=16% Similarity=0.200 Sum_probs=132.3
Q ss_pred CCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc----------CCCEEEE
Q 005285 166 TKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES----------GLPFVFA 235 (704)
Q Consensus 166 ~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~----------g~~~v~i 235 (704)
.+.+|++++|.++. ++.++..+... .+.++||+||||||||++|+++|+.+ +.+++++
T Consensus 165 r~~~ld~viGr~~~---i~~l~~~l~~~---------~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 232 (854)
T 1qvr_A 165 AEGKLDPVIGRDEE---IRRVIQILLRR---------TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSL 232 (854)
T ss_dssp HTTCSCCCCSCHHH---HHHHHHHHHCS---------SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEE
T ss_pred hcCCCcccCCcHHH---HHHHHHHHhcC---------CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEe
Confidence 35689999999854 44444444332 35679999999999999999999987 8899999
Q ss_pred eCccccch---hhhhHHHHHHHHHHHhhC-CCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccC
Q 005285 236 SGAEFTDS---EKSGAARINEMFSIARRN-APAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLR 311 (704)
Q Consensus 236 s~s~~~~~---~~~g~~~vr~lF~~Ak~~-~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~ 311 (704)
+++.+... .+....+++.+|..+... .|+||||||+|.+.+.+... ......+.|...+..
T Consensus 233 ~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~--g~~~~~~~L~~~l~~------------- 297 (854)
T 1qvr_A 233 QMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAE--GAVDAGNMLKPALAR------------- 297 (854)
T ss_dssp CC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC---------------------HHHHHT-------------
T ss_pred ehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCcc--chHHHHHHHHHHHhC-------------
Confidence 99988642 345667789999998875 68999999999997543221 112233344444432
Q ss_pred ccEEEEEEcCCCC----CCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcC------CCccccccHHHHHHh-----c
Q 005285 312 QAVIFICATNRPD----ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAG------KQLAEDVNFEELVFR-----T 376 (704)
Q Consensus 312 ~~ViVIaaTN~p~----~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~------~~l~~dvdl~~La~~-----t 376 (704)
..+.+|++||.++ .+|++|+| ||+. |.|+.|+.+++.+||+.++.. ..+. +..+..++.. +
T Consensus 298 ~~i~~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~-~~al~~~~~ls~r~i~ 373 (854)
T 1qvr_A 298 GELRLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRIS-DSAIIAAATLSHRYIT 373 (854)
T ss_dssp TCCCEEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEEC-HHHHHHHHHHHHHHCC
T ss_pred CCeEEEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCC-HHHHHHHHHHHhhhcc
Confidence 1267888888765 47999999 9985 999999999999999866542 2222 2234445544 3
Q ss_pred cCCCHHHHHHHHHHHHHHHHHh
Q 005285 377 VGFSGADIRNLVNESGIMSVRK 398 (704)
Q Consensus 377 ~G~sgadL~~Lv~eA~~~A~r~ 398 (704)
..|.+.....++.+|+..+..+
T Consensus 374 ~~~lp~kai~lldea~a~~~~~ 395 (854)
T 1qvr_A 374 ERRLPDKAIDLIDEAAARLRMA 395 (854)
T ss_dssp SSCTHHHHHHHHHHHHHHHHHT
T ss_pred cccChHHHHHHHHHHHHHHHhh
Confidence 4567888889999888776554
No 71
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.61 E-value=7.9e-16 Score=148.33 Aligned_cols=151 Identities=19% Similarity=0.252 Sum_probs=105.7
Q ss_pred CccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc----------CCCEEEEe
Q 005285 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES----------GLPFVFAS 236 (704)
Q Consensus 167 ~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~----------g~~~v~is 236 (704)
+.+|++++|.++. ++.+...+... .+.++||+||||||||++|++++.++ +.+++.++
T Consensus 18 ~~~~~~~~g~~~~---~~~l~~~l~~~---------~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (187)
T 2p65_A 18 AGKLDPVIGRDTE---IRRAIQILSRR---------TKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLD 85 (187)
T ss_dssp TTCSCCCCSCHHH---HHHHHHHHTSS---------SSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEEC
T ss_pred ccccchhhcchHH---HHHHHHHHhCC---------CCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEe
Confidence 4578999998854 44455555442 46789999999999999999999986 78899998
Q ss_pred Cccccch---hhhhHHHHHHHHHHHhhC-CCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCc
Q 005285 237 GAEFTDS---EKSGAARINEMFSIARRN-APAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQ 312 (704)
Q Consensus 237 ~s~~~~~---~~~g~~~vr~lF~~Ak~~-~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~ 312 (704)
+..+... .+.....++.++..+... .|++|||||+|.+.+.+.... ......+.|...++. .
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~-~~~~~~~~l~~~~~~-------------~ 151 (187)
T 2p65_A 86 LSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAE-GALDAGNILKPMLAR-------------G 151 (187)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCT-TSCCTHHHHHHHHHT-------------T
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccc-cchHHHHHHHHHHhc-------------C
Confidence 8776532 233445577777776654 689999999999964332111 111123333333332 1
Q ss_pred cEEEEEEcCCCC-----CCcccccCCCccceeeeeCCCC
Q 005285 313 AVIFICATNRPD-----ELDLEFVRPGRIDRRLYIGLPD 346 (704)
Q Consensus 313 ~ViVIaaTN~p~-----~LD~aLlRpgRfd~~I~v~~Pd 346 (704)
.+++|++||.++ .+++++++ ||+. +.++.|+
T Consensus 152 ~~~ii~~~~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 152 ELRCIGATTVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp CSCEEEEECHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred CeeEEEecCHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 268888888765 68999999 9984 9999986
No 72
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.60 E-value=2.4e-15 Score=178.33 Aligned_cols=190 Identities=19% Similarity=0.213 Sum_probs=131.3
Q ss_pred CCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc----------CCCEEE
Q 005285 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES----------GLPFVF 234 (704)
Q Consensus 165 ~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~----------g~~~v~ 234 (704)
..+..|++|+|.++..+.+.++ +..+ .+.++||+||||||||++|+++|..+ +.+++.
T Consensus 174 ~~~~~ld~iiG~~~~i~~l~~~---l~~~---------~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~ 241 (758)
T 3pxi_A 174 AKEDSLDPVIGRSKEIQRVIEV---LSRR---------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT 241 (758)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHH---HHCS---------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC
T ss_pred HhhCCCCCccCchHHHHHHHHH---HhCC---------CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEE
Confidence 3456799999998765555443 3322 45689999999999999999999986 888888
Q ss_pred EeCccccch-hhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCcc
Q 005285 235 ASGAEFTDS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQA 313 (704)
Q Consensus 235 is~s~~~~~-~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ 313 (704)
+++ ... .+....+++.+|..+....|+||||| +. ....+.|+..|+. ..
T Consensus 242 ~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~~---------~~~~~~L~~~l~~-------------~~ 291 (758)
T 3pxi_A 242 LDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA---------IDASNILKPSLAR-------------GE 291 (758)
T ss_dssp C-------------CTTHHHHHHHHHTCCCCEEEEC-----C-----------------CCCTTS-------------SS
T ss_pred ecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----Cc---------hhHHHHHHHHHhc-------------CC
Confidence 887 222 34556679999999999999999999 11 1123444444432 23
Q ss_pred EEEEEEcCCCC-----CCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcc-----ccccHHHHHHh-----ccC
Q 005285 314 VIFICATNRPD-----ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-----EDVNFEELVFR-----TVG 378 (704)
Q Consensus 314 ViVIaaTN~p~-----~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-----~dvdl~~La~~-----t~G 378 (704)
+.+|+|||..+ .+|++++| || ..|.|+.|+.+++.+||+.+....... .+..+..++.. +.+
T Consensus 292 v~~I~at~~~~~~~~~~~d~al~r--Rf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~ 368 (758)
T 3pxi_A 292 LQCIGATTLDEYRKYIEKDAALER--RF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDR 368 (758)
T ss_dssp CEEEEECCTTTTHHHHTTCSHHHH--SE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCS
T ss_pred EEEEeCCChHHHHHHhhccHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccC
Confidence 79999999988 79999999 99 569999999999999999776543221 12224444443 346
Q ss_pred CCHHHHHHHHHHHHHHHHHhC
Q 005285 379 FSGADIRNLVNESGIMSVRKG 399 (704)
Q Consensus 379 ~sgadL~~Lv~eA~~~A~r~~ 399 (704)
+.+.....++.+|+..+..+.
T Consensus 369 ~~p~~ai~ll~~a~~~~~~~~ 389 (758)
T 3pxi_A 369 FLPDKAIDLIDEAGSKVRLRS 389 (758)
T ss_dssp CTTHHHHHHHHHHHHHHHHHT
T ss_pred cCCcHHHHHHHHHHHHHHhhc
Confidence 677888888988877665543
No 73
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.60 E-value=5.1e-15 Score=152.96 Aligned_cols=212 Identities=19% Similarity=0.186 Sum_probs=119.4
Q ss_pred ccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcC---CCEEEEeCccccchh
Q 005285 168 SMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESG---LPFVFASGAEFTDSE 244 (704)
Q Consensus 168 ~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g---~~~v~is~s~~~~~~ 244 (704)
.+|++++|.+.....+.+.+..... .+.++||+||||||||++|++++..++ .||+.++|+.+....
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~----------~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAP----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTT----------SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred cccccceeCCHHHHHHHHHHHHHhC----------CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 4799999998776666555544322 246899999999999999999999874 799999999875431
Q ss_pred hhh----H---------HHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccC
Q 005285 245 KSG----A---------ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLR 311 (704)
Q Consensus 245 ~~g----~---------~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~ 311 (704)
... . ......|..+ .+++|||||+|.+.. .....|+..|+..............
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~~----------~~q~~Ll~~l~~~~~~~~g~~~~~~ 139 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPM----------MVQEKLLRVIEYGELERVGGSQPLQ 139 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSCH----------HHHHHHHHHHHHCEECCCCC--CEE
T ss_pred HHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcCH----------HHHHHHHHHHHhCCeecCCCccccc
Confidence 100 0 0001123333 357999999999842 2345566666542111000011122
Q ss_pred ccEEEEEEcCCC-------CCCcccccCCCccceeeeeCCCCHHH----HHHHHHHHhc----CCCc-----cccccHHH
Q 005285 312 QAVIFICATNRP-------DELDLEFVRPGRIDRRLYIGLPDAKQ----RVQIFDVHSA----GKQL-----AEDVNFEE 371 (704)
Q Consensus 312 ~~ViVIaaTN~p-------~~LD~aLlRpgRfd~~I~v~~Pd~~e----R~~Il~~~l~----~~~l-----~~dvdl~~ 371 (704)
.++.+|+|||.+ ..++++|.+ ||.. +.+..|+..+ ...+++.++. .... -.+..+..
T Consensus 140 ~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~-~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~ 216 (265)
T 2bjv_A 140 VNVRLVCATNADLPAMVNEGTFRADLLD--ALAF-DVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARET 216 (265)
T ss_dssp CCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCS-EEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHH
T ss_pred CCeEEEEecCcCHHHHHHcCCccHHHHH--hhcC-cEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHH
Confidence 357899999984 246677777 8853 4455555443 4444443332 1111 11222445
Q ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHH
Q 005285 372 LVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDI 408 (704)
Q Consensus 372 La~~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl 408 (704)
|.......+.++|.++++.+...+. ...|+.+|+
T Consensus 217 L~~~~~~gn~reL~~~l~~~~~~~~---~~~i~~~~l 250 (265)
T 2bjv_A 217 LLNYRWPGNIRELKNVVERSVYRHG---TSDYPLDDI 250 (265)
T ss_dssp HHHSCCTTHHHHHHHHHHHHHHHHC---CSSSCBCCC
T ss_pred HHhCCCCCCHHHHHHHHHHHHHhCC---CCcCcHHHc
Confidence 5544433456788999988876652 345666554
No 74
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.58 E-value=3.2e-16 Score=180.76 Aligned_cols=195 Identities=13% Similarity=0.137 Sum_probs=130.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCCCEEEE----eCccccchh-h---hhHHH-HHHHHHHHhhCCCeEEEEccchhhh
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFA----SGAEFTDSE-K---SGAAR-INEMFSIARRNAPAFVFVDEIDAIA 275 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e~g~~~v~i----s~s~~~~~~-~---~g~~~-vr~lF~~Ak~~~P~ILfIDEiDal~ 275 (704)
.+|||+||||||||++|+++|+.++..++.. ++..+.... . .+... ....+..| ..+|+||||||.+.
T Consensus 328 ~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A---~~gil~IDEid~l~ 404 (595)
T 3f9v_A 328 IHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVLA---DGGIAVIDEIDKMR 404 (595)
T ss_dssp CCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHHH---SSSEECCTTTTCCC
T ss_pred cceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccccccccccCCeeEec---CCCcEEeehhhhCC
Confidence 3799999999999999999999988766542 222222211 0 00000 01122233 24799999999884
Q ss_pred ccCCCCChhHHHHHHHHHHHhcCCccc--CCccccccCccEEEEEEcCCCC-------------CCcccccCCCccce-e
Q 005285 276 GRHARKDPRRRATFEALIAQLDGDKER--TGIDRFSLRQAVIFICATNRPD-------------ELDLEFVRPGRIDR-R 339 (704)
Q Consensus 276 ~~~~~~~~e~~~~ln~LL~~ld~~~~~--~~~~~~~~~~~ViVIaaTN~p~-------------~LD~aLlRpgRfd~-~ 339 (704)
. ...+.|+..|+..... ..........++.||+|||.+. .|++++++ |||. .
T Consensus 405 ~----------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~ 472 (595)
T 3f9v_A 405 D----------EDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIF 472 (595)
T ss_dssp S----------HHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCE
T ss_pred H----------hHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEE
Confidence 2 2457788888754321 1111223345689999999986 89999999 9985 5
Q ss_pred eeeCCCCHHHHHHHHHHHhcCCC-------cc-------------------ccccHHHHHHh--------------ccCC
Q 005285 340 LYIGLPDAKQRVQIFDVHSAGKQ-------LA-------------------EDVNFEELVFR--------------TVGF 379 (704)
Q Consensus 340 I~v~~Pd~~eR~~Il~~~l~~~~-------l~-------------------~dvdl~~La~~--------------t~G~ 379 (704)
+..+.|+.+ ...|.+..+.... +. .+.....|... +.+.
T Consensus 473 ~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~ 551 (595)
T 3f9v_A 473 ILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILI 551 (595)
T ss_dssp EECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCS
T ss_pred EeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccc
Confidence 556777777 7777776654321 00 11112233332 3578
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Q 005285 380 SGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQ 415 (704)
Q Consensus 380 sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al~~~ 415 (704)
|.+.+.++++.|...|..+++..|+.+|+.+|+.-.
T Consensus 552 s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~ 587 (595)
T 3f9v_A 552 TPRQLEALIRISEAYAKMALKAEVTREDAERAINIM 587 (595)
T ss_dssp STTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999998743
No 75
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.56 E-value=1.2e-14 Score=174.68 Aligned_cols=211 Identities=19% Similarity=0.225 Sum_probs=138.0
Q ss_pred ccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccccchhhh
Q 005285 170 YKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKS 246 (704)
Q Consensus 170 f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~~~~~~ 246 (704)
+++|+|++++.+.+...+...+..... ..++..++||+||||||||++|+++|..+ +.+|+.++|+++.+....
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g~~~---~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~ 633 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAGLKD---PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 633 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGGCSC---SSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG
T ss_pred hcccCCcHHHHHHHHHHHHHHhcccCC---CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHH
Confidence 467889988887777776553221000 01233589999999999999999999988 889999999988764211
Q ss_pred -----------hHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEE
Q 005285 247 -----------GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVI 315 (704)
Q Consensus 247 -----------g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~Vi 315 (704)
|......+....+...++||||||+|.+. ..+++.|+..|+......+........+++
T Consensus 634 s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~----------~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~i 703 (854)
T 1qvr_A 634 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAH----------PDVFNILLQILDDGRLTDSHGRTVDFRNTV 703 (854)
T ss_dssp GGC--------------CHHHHHHHCSSEEEEESSGGGSC----------HHHHHHHHHHHTTTEECCSSSCCEECTTEE
T ss_pred HHHcCCCCCCcCccccchHHHHHHhCCCeEEEEecccccC----------HHHHHHHHHHhccCceECCCCCEeccCCeE
Confidence 22222344445555667999999999873 247788888888643221111122234689
Q ss_pred EEEEcCCC--------------------------CCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCC--------
Q 005285 316 FICATNRP--------------------------DELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGK-------- 361 (704)
Q Consensus 316 VIaaTN~p--------------------------~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~-------- 361 (704)
||+|||.. ..+.|+|+. ||+..+.+.+|+.+++..|++.++...
T Consensus 704 iI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~ 781 (854)
T 1qvr_A 704 IILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKR 781 (854)
T ss_dssp EEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999972 234566666 999999999999999999998776521
Q ss_pred -Ccc-ccccHHHHHHhcc--CCCHHHHHHHHHHHHHHH
Q 005285 362 -QLA-EDVNFEELVFRTV--GFSGADIRNLVNESGIMS 395 (704)
Q Consensus 362 -~l~-~dvdl~~La~~t~--G~sgadL~~Lv~eA~~~A 395 (704)
.+. .+..+..|+.... .+..++|.++++.+...+
T Consensus 782 ~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~ 819 (854)
T 1qvr_A 782 ISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETP 819 (854)
T ss_dssp CEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHH
T ss_pred ceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHH
Confidence 111 1122455555544 456677777777655443
No 76
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.54 E-value=3.7e-14 Score=152.09 Aligned_cols=206 Identities=16% Similarity=0.134 Sum_probs=135.5
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcC-----CCEEEEeCc
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESG-----LPFVFASGA 238 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g-----~~~v~is~s 238 (704)
+..+.+|++++|++++.+.|...+. . ...|. +||+||||||||++|+++|+.+. ..++.++++
T Consensus 18 k~rp~~~~~~~g~~~~~~~L~~~i~---~--------g~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~ 85 (340)
T 1sxj_C 18 KYRPETLDEVYGQNEVITTVRKFVD---E--------GKLPH-LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNAS 85 (340)
T ss_dssp HTCCSSGGGCCSCHHHHHHHHHHHH---T--------TCCCC-EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTT
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHh---c--------CCCce-EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCc
Confidence 5567889999999877776665543 2 13344 99999999999999999999863 246777766
Q ss_pred cccchhhhhHHHHHHHHHHHh------hCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCc
Q 005285 239 EFTDSEKSGAARINEMFSIAR------RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQ 312 (704)
Q Consensus 239 ~~~~~~~~g~~~vr~lF~~Ak------~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~ 312 (704)
+... ...++....... ...+.|++|||+|.+.. ...+.|+..++....
T Consensus 86 ~~~~-----~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~----------~~~~~L~~~le~~~~----------- 139 (340)
T 1sxj_C 86 DDRG-----IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN----------AAQNALRRVIERYTK----------- 139 (340)
T ss_dssp SCCS-----HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH----------HHHHHHHHHHHHTTT-----------
T ss_pred cccc-----HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH----------HHHHHHHHHHhcCCC-----------
Confidence 5322 223333332222 12368999999998842 235667777765332
Q ss_pred cEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcC--CCccccccHHHHHHhccCCCHHHHHHHHHH
Q 005285 313 AVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAG--KQLAEDVNFEELVFRTVGFSGADIRNLVNE 390 (704)
Q Consensus 313 ~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~--~~l~~dvdl~~La~~t~G~sgadL~~Lv~e 390 (704)
.+.+|++||.+..+.+++++ |+. .+.++.++.++..+++...+.. ..+.+ ..+..++..+.| ..+.+.++++.
T Consensus 140 ~~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~-~~~~~i~~~s~G-~~r~~~~~l~~ 214 (340)
T 1sxj_C 140 NTRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSP-NAEKALIELSNG-DMRRVLNVLQS 214 (340)
T ss_dssp TEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCH-HHHHHHHHHHTT-CHHHHHHHTTT
T ss_pred CeEEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHcCC-CHHHHHHHHHH
Confidence 25778889999999999998 885 7899999999999998877743 33332 235667766554 33344444443
Q ss_pred HHHHHHHhCCCcccHHHHHHHH
Q 005285 391 SGIMSVRKGHSKIQQQDIVDVL 412 (704)
Q Consensus 391 A~~~A~r~~~~~It~~dl~~Al 412 (704)
++..+.+.+...|+.+++.+++
T Consensus 215 ~~~~~~~~~~~~it~~~v~~~~ 236 (340)
T 1sxj_C 215 CKATLDNPDEDEISDDVIYECC 236 (340)
T ss_dssp TTTTTCSSSCCCBCHHHHHHHT
T ss_pred HHHhcCCcccccccHHHHHHHh
Confidence 3322222223368888876554
No 77
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.52 E-value=3e-14 Score=151.01 Aligned_cols=207 Identities=21% Similarity=0.246 Sum_probs=125.6
Q ss_pred ceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccccchhhh--
Q 005285 172 EVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKS-- 246 (704)
Q Consensus 172 dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~~~~~~-- 246 (704)
+++|.+...+.+.+.+.... ..+.+|||+||||||||++|++++..+ +.||+.++|+.+......
T Consensus 3 ~iig~s~~~~~~~~~~~~~a----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~ 72 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVA----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESE 72 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHC----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHH
T ss_pred CcEECCHHHHHHHHHHHHHh----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHH
Confidence 57788766665555554432 235689999999999999999999965 689999999987543110
Q ss_pred ----------hH-HHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEE
Q 005285 247 ----------GA-ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVI 315 (704)
Q Consensus 247 ----------g~-~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~Vi 315 (704)
++ ......|..|. .++|||||||.+.. .....|+..|+...............++.
T Consensus 73 lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l~~----------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~r 139 (304)
T 1ojl_A 73 LFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDISP----------LMQVRLLRAIQEREVQRVGSNQTISVDVR 139 (304)
T ss_dssp HTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTCCH----------HHHHHHHHHHHSSBCCBTTBCCCCBCCCE
T ss_pred hcCccccccCchhhhhcCHHHhcC---CCEEEEeccccCCH----------HHHHHHHHHHhcCEeeecCCcccccCCeE
Confidence 00 01223455543 46999999999842 24566777776543211111122334589
Q ss_pred EEEEcCCC-------CCCcccccCCCccceeeeeCCCCHHHH----HHHHHHHhcC---------CCccccccHHHHHHh
Q 005285 316 FICATNRP-------DELDLEFVRPGRIDRRLYIGLPDAKQR----VQIFDVHSAG---------KQLAEDVNFEELVFR 375 (704)
Q Consensus 316 VIaaTN~p-------~~LD~aLlRpgRfd~~I~v~~Pd~~eR----~~Il~~~l~~---------~~l~~dvdl~~La~~ 375 (704)
||+|||.+ ..+++.|.. ||. .+.+..|+..+| ..+++.++.. ..+. +..+..|...
T Consensus 140 iI~atn~~l~~~v~~g~fr~~L~~--Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s-~~a~~~L~~~ 215 (304)
T 1ojl_A 140 LIAATHRDLAEEVSAGRFRQDLYY--RLN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFT-PQAMDLLIHY 215 (304)
T ss_dssp EEEEESSCHHHHHHHTSSCHHHHH--HHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBC-HHHHHHHHHC
T ss_pred EEEecCccHHHHHHhCCcHHHHHh--hcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCC-HHHHHHHHcC
Confidence 99999985 124445555 664 455556655544 3455544321 1122 2235566665
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHH
Q 005285 376 TVGFSGADIRNLVNESGIMSVRKGHSKIQQQDI 408 (704)
Q Consensus 376 t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl 408 (704)
...-+.++|.++++.|...+. ...|+.+|+
T Consensus 216 ~wpGnvReL~~~l~~~~~~~~---~~~i~~~~l 245 (304)
T 1ojl_A 216 DWPGNIRELENAIERAVVLLT---GEYISEREL 245 (304)
T ss_dssp CCSSHHHHHHHHHHHHHHHCC---SSSBCGGGS
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CCcccHHhh
Confidence 533356788888888876652 345666654
No 78
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.51 E-value=7.8e-14 Score=149.60 Aligned_cols=193 Identities=11% Similarity=0.109 Sum_probs=127.3
Q ss_pred ccCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCC------------
Q 005285 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGL------------ 230 (704)
Q Consensus 163 ~~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~------------ 230 (704)
++..+.+|++++|++++.+.++..+. +. .+.|. ++|+||||||||++++++|+++..
T Consensus 6 ~kyrP~~~~~~vg~~~~~~~l~~~~~--~~--------~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~ 74 (354)
T 1sxj_E 6 DKYRPKSLNALSHNEELTNFLKSLSD--QP--------RDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQ 74 (354)
T ss_dssp TTTCCCSGGGCCSCHHHHHHHHTTTT--CT--------TCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC-------
T ss_pred hccCCCCHHHhcCCHHHHHHHHHHHh--hC--------CCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEeccee
Confidence 35677899999999877666554320 21 23455 999999999999999999996411
Q ss_pred -----------------CEEEEeCccccchhhhhHHHHHHHHHHHh--------------hCCCeEEEEccchhhhccCC
Q 005285 231 -----------------PFVFASGAEFTDSEKSGAARINEMFSIAR--------------RNAPAFVFVDEIDAIAGRHA 279 (704)
Q Consensus 231 -----------------~~v~is~s~~~~~~~~g~~~vr~lF~~Ak--------------~~~P~ILfIDEiDal~~~~~ 279 (704)
+++.+++++.... ....++..+..+. ...|.||+|||+|.+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~---- 147 (354)
T 1sxj_E 75 FVTASNRKLELNVVSSPYHLEITPSDMGNN---DRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT---- 147 (354)
T ss_dssp -----------CCEECSSEEEECCC----C---CHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC----
T ss_pred ecccccccceeeeecccceEEecHhhcCCc---chHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC----
Confidence 1233332221100 0012444444432 2357799999999862
Q ss_pred CCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhc
Q 005285 280 RKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA 359 (704)
Q Consensus 280 ~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~ 359 (704)
....+.|+..|+.... ++.+|++||.++.+.+++++ |+ ..+.|++|+.+++.++++..+.
T Consensus 148 ------~~~~~~L~~~le~~~~-----------~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~ 207 (354)
T 1sxj_E 148 ------KDAQAALRRTMEKYSK-----------NIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVT 207 (354)
T ss_dssp ------HHHHHHHHHHHHHSTT-----------TEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHhhcC-----------CCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHH
Confidence 1245666666654321 36888889999999999998 88 7899999999999999998775
Q ss_pred CCCcc-c-cccHHHHHHhccCCCHHHHHHHHHHHHHH
Q 005285 360 GKQLA-E-DVNFEELVFRTVGFSGADIRNLVNESGIM 394 (704)
Q Consensus 360 ~~~l~-~-dvdl~~La~~t~G~sgadL~~Lv~eA~~~ 394 (704)
...+. + +..+..++..+.| +.+++.++++.+...
T Consensus 208 ~~~~~~~~~~~l~~i~~~~~G-~~r~a~~~l~~~~~~ 243 (354)
T 1sxj_E 208 NERIQLETKDILKRIAQASNG-NLRVSLLMLESMALN 243 (354)
T ss_dssp HHTCEECCSHHHHHHHHHHTT-CHHHHHHHHTHHHHT
T ss_pred HcCCCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHHh
Confidence 43332 2 3346788877765 566666777665543
No 79
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.43 E-value=5.4e-12 Score=137.54 Aligned_cols=226 Identities=11% Similarity=0.080 Sum_probs=145.3
Q ss_pred cccceecCcccHHHHHHHH-HHh-CCchhhhhcCCccCceEEE--EcCCCChHHHHHHHHHHHc---------CCCEEEE
Q 005285 169 MYKEVVLGGDVWDLLDELM-IYM-GNPMQYYERGVQFVRGVLL--SGPPGTGKTLFARTLAKES---------GLPFVFA 235 (704)
Q Consensus 169 ~f~dVvG~~~~k~~L~elv-~~l-~~p~~~~~~g~~~p~gvLL--~GPPGTGKT~LAraiA~e~---------g~~~v~i 235 (704)
..++++|.++..+.|.+.+ ... ..+ ...+..++| +||||||||++++++++++ +.+++++
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~-------~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 92 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGA-------GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYV 92 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSS-------CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCC-------CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEE
Confidence 4477899987666666655 432 120 024568999 9999999999999999875 5678899
Q ss_pred eCccccchh-----------------hh-hHHHHHHHHHHHh-hCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHh
Q 005285 236 SGAEFTDSE-----------------KS-GAARINEMFSIAR-RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQL 296 (704)
Q Consensus 236 s~s~~~~~~-----------------~~-g~~~vr~lF~~Ak-~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~l 296 (704)
+|....... +. .......+..... ...|.||+|||+|.+...+. .+ ...+..++..+
T Consensus 93 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~-~~---~~~l~~l~~~~ 168 (412)
T 1w5s_A 93 NAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR-IA---AEDLYTLLRVH 168 (412)
T ss_dssp EGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT-SC---HHHHHHHHTHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC-cc---hHHHHHHHHHH
Confidence 875432110 00 0111222222222 35589999999999953210 11 23445555544
Q ss_pred cCCcccCCccccccCccEEEEEEcCCCC---CCc---ccccCCCccceeeeeCCCCHHHHHHHHHHHhcCC---Cccccc
Q 005285 297 DGDKERTGIDRFSLRQAVIFICATNRPD---ELD---LEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGK---QLAEDV 367 (704)
Q Consensus 297 d~~~~~~~~~~~~~~~~ViVIaaTN~p~---~LD---~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~---~l~~dv 367 (704)
....... ...++.+|++||.++ .++ +.+.+ ||...+.+++++.++..++++.++... ....+.
T Consensus 169 ~~~~~~~------~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~ 240 (412)
T 1w5s_A 169 EEIPSRD------GVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPR 240 (412)
T ss_dssp HHSCCTT------SCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHH
T ss_pred HhcccCC------CCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChH
Confidence 4321000 012478888888765 344 55666 565569999999999999998665321 112233
Q ss_pred cHHHHHHhcc------CCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Q 005285 368 NFEELVFRTV------GFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414 (704)
Q Consensus 368 dl~~La~~t~------G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al~~ 414 (704)
.+..++..+. | .+..+.++++.|...|..++...++.+++..++..
T Consensus 241 ~~~~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~ 292 (412)
T 1w5s_A 241 HLELISDVYGEDKGGDG-SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSE 292 (412)
T ss_dssp HHHHHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 4667777777 6 47788899999988888888888999999888765
No 80
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.39 E-value=1.4e-12 Score=150.84 Aligned_cols=224 Identities=18% Similarity=0.301 Sum_probs=137.8
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCC---EEEEeCccc
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP---FVFASGAEF 240 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~---~v~is~s~~ 240 (704)
+.++.+|++++|++.+.+.+...+. ....++|+||||||||++|+++|+.+... .+.+.+...
T Consensus 34 ~~rp~~l~~i~G~~~~l~~l~~~i~--------------~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~ 99 (604)
T 3k1j_A 34 EVPEKLIDQVIGQEHAVEVIKTAAN--------------QKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPE 99 (604)
T ss_dssp CCCSSHHHHCCSCHHHHHHHHHHHH--------------TTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTT
T ss_pred cccccccceEECchhhHhhcccccc--------------CCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcc
Confidence 4567889999999877665554433 12479999999999999999999987432 222222211
Q ss_pred cch--------hhhh-------------------------------------------------HHHHHHHHHH------
Q 005285 241 TDS--------EKSG-------------------------------------------------AARINEMFSI------ 257 (704)
Q Consensus 241 ~~~--------~~~g-------------------------------------------------~~~vr~lF~~------ 257 (704)
... .+.. ......+|..
T Consensus 100 ~~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~ 179 (604)
T 3k1j_A 100 DENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPF 179 (604)
T ss_dssp CTTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC
T ss_pred cccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechh
Confidence 100 0000 0001122211
Q ss_pred -----------------HhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcc----------cccc
Q 005285 258 -----------------ARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGID----------RFSL 310 (704)
Q Consensus 258 -----------------Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~----------~~~~ 310 (704)
.....+.+|||||+|.+. ....+.|+..|+......... ....
T Consensus 180 ~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l~----------~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~ 249 (604)
T 3k1j_A 180 QSGGLGTPAHERVEPGMIHRAHKGVLFIDEIATLS----------LKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPV 249 (604)
T ss_dssp ----CCCCGGGGEECCHHHHTTTSEEEETTGGGSC----------HHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCE
T ss_pred hcCCccccccccccCceeeecCCCEEEEechhhCC----------HHHHHHHHHHHHcCcEEecccccccccccCCCCcc
Confidence 111245799999999873 224566666666332111000 1122
Q ss_pred CccEEEEEEcCCC--CCCcccccCCCccc---eeeeeCC--C-CHHHHHHHHHHHhc------C-CCccccccHHHHHHh
Q 005285 311 RQAVIFICATNRP--DELDLEFVRPGRID---RRLYIGL--P-DAKQRVQIFDVHSA------G-KQLAEDVNFEELVFR 375 (704)
Q Consensus 311 ~~~ViVIaaTN~p--~~LD~aLlRpgRfd---~~I~v~~--P-d~~eR~~Il~~~l~------~-~~l~~dvdl~~La~~ 375 (704)
...+.||+|||+. +.++++|++ ||+ ..+.++. + +.+....+++.... . ..+. +..+..|.+.
T Consensus 250 p~~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls-~eAl~~Li~~ 326 (604)
T 3k1j_A 250 PCDFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFT-KEAVEEIVRE 326 (604)
T ss_dssp ECCCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBB-HHHHHHHHHH
T ss_pred ceeEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCC-HHHHHHHHHH
Confidence 3458899999986 679999999 996 4555543 2 34555555543322 1 1222 2234455443
Q ss_pred c---cCC------CHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Q 005285 376 T---VGF------SGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414 (704)
Q Consensus 376 t---~G~------sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al~~ 414 (704)
. .|- +.+++.++++.|...|..++...|+.+|+.+|+..
T Consensus 327 ~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 327 AQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 2 553 78999999999999998889999999999999864
No 81
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.38 E-value=7.4e-12 Score=134.18 Aligned_cols=158 Identities=16% Similarity=0.210 Sum_probs=112.4
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCCC------------------------EEEEeCccccchhhhhHHHHHHHHHH
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLP------------------------FVFASGAEFTDSEKSGAARINEMFSI 257 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~g~~------------------------~v~is~s~~~~~~~~g~~~vr~lF~~ 257 (704)
+.|..+||+||||||||++|+++|+.+..+ ++.+++.+- ....+...++.+.+.
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~--~~~~~i~~ir~l~~~ 99 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG--KNTLGVDAVREVTEK 99 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT--CSSBCHHHHHHHHHH
T ss_pred CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc--CCCCCHHHHHHHHHH
Confidence 567899999999999999999999987532 344433210 011234457777777
Q ss_pred Hhh----CCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCC
Q 005285 258 ARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRP 333 (704)
Q Consensus 258 Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRp 333 (704)
+.. ..+.|++|||+|.+.. ...|.|+..|+... .++++|++||.++.+.+++++
T Consensus 100 ~~~~~~~~~~kvviIdead~l~~----------~a~naLLk~lEep~-----------~~~~~Il~t~~~~~l~~ti~S- 157 (334)
T 1a5t_A 100 LNEHARLGGAKVVWVTDAALLTD----------AAANALLKTLEEPP-----------AETWFFLATREPERLLATLRS- 157 (334)
T ss_dssp TTSCCTTSSCEEEEESCGGGBCH----------HHHHHHHHHHTSCC-----------TTEEEEEEESCGGGSCHHHHT-
T ss_pred HhhccccCCcEEEEECchhhcCH----------HHHHHHHHHhcCCC-----------CCeEEEEEeCChHhCcHHHhh-
Confidence 653 2368999999999842 35788999987633 237888889999999999999
Q ss_pred CccceeeeeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHH
Q 005285 334 GRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNE 390 (704)
Q Consensus 334 gRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~e 390 (704)
|+ ..+.|++|+.++..++++... .+ ++..+..++..+.| +.+.+.++++.
T Consensus 158 -Rc-~~~~~~~~~~~~~~~~L~~~~---~~-~~~~~~~l~~~s~G-~~r~a~~~l~~ 207 (334)
T 1a5t_A 158 -RC-RLHYLAPPPEQYAVTWLSREV---TM-SQDALLAALRLSAG-SPGAALALFQG 207 (334)
T ss_dssp -TS-EEEECCCCCHHHHHHHHHHHC---CC-CHHHHHHHHHHTTT-CHHHHHHTTSS
T ss_pred -cc-eeeeCCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCC-CHHHHHHHhcc
Confidence 88 579999999999999998775 22 23345667766555 44445444443
No 82
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.37 E-value=1.1e-13 Score=130.10 Aligned_cols=112 Identities=15% Similarity=0.178 Sum_probs=76.6
Q ss_pred ceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccchhhhhHHHH
Q 005285 172 EVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARI 251 (704)
Q Consensus 172 dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~~~~g~~~v 251 (704)
+++|.++..+.+.+.+.... ..+.+|||+||||||||++|++++..++ +|+.++|+++.... .
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------~ 67 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------P 67 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC------H
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh------h
Confidence 56788777666666654331 2346799999999999999999999888 99999998865432 4
Q ss_pred HHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCC
Q 005285 252 NEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRP 323 (704)
Q Consensus 252 r~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p 323 (704)
..+|..+. +++|||||+|.+.. . ....|+..++... ..++.+|+|||.+
T Consensus 68 ~~~~~~a~---~~~l~lDei~~l~~-------~---~q~~Ll~~l~~~~----------~~~~~iI~~tn~~ 116 (143)
T 3co5_A 68 MELLQKAE---GGVLYVGDIAQYSR-------N---IQTGITFIIGKAE----------RCRVRVIASCSYA 116 (143)
T ss_dssp HHHHHHTT---TSEEEEEECTTCCH-------H---HHHHHHHHHHHHT----------TTTCEEEEEEEEC
T ss_pred hhHHHhCC---CCeEEEeChHHCCH-------H---HHHHHHHHHHhCC----------CCCEEEEEecCCC
Confidence 55666654 46999999999842 1 2344555444321 1236888888864
No 83
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.37 E-value=1.1e-12 Score=123.54 Aligned_cols=112 Identities=15% Similarity=0.189 Sum_probs=77.6
Q ss_pred ceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccccchhhhhH
Q 005285 172 EVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKSGA 248 (704)
Q Consensus 172 dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~~~~~~g~ 248 (704)
+++|.+...+.+.+.+.... ..+.+|||+||||||||++|++++..+ +.||+ ++|+.+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a----------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~----- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS----------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA----- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT----------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS-----
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc-----
Confidence 56788766655555544332 234679999999999999999999986 78999 999987664
Q ss_pred HHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCC
Q 005285 249 ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRP 323 (704)
Q Consensus 249 ~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p 323 (704)
......|..+. .++|||||+|.+.. .....|+..|.... .++.+|+|||.+
T Consensus 66 ~~~~~~~~~a~---~g~l~ldei~~l~~----------~~q~~Ll~~l~~~~-----------~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 PQLNDFIALAQ---GGTLVLSHPEHLTR----------EQQYHLVQLQSQEH-----------RPFRLIGIGDTS 116 (145)
T ss_dssp SCHHHHHHHHT---TSCEEEECGGGSCH----------HHHHHHHHHHHSSS-----------CSSCEEEEESSC
T ss_pred hhhhcHHHHcC---CcEEEEcChHHCCH----------HHHHHHHHHHhhcC-----------CCEEEEEECCcC
Confidence 23445566663 46999999999842 23455666663322 236788999874
No 84
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.35 E-value=2.3e-12 Score=108.80 Aligned_cols=74 Identities=23% Similarity=0.462 Sum_probs=71.2
Q ss_pred CCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Q 005285 343 GLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQL 416 (704)
Q Consensus 343 ~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al~~~~ 416 (704)
|+||.++|.+||+.|+++.++..++|+..||..|.||||+||.++|++|++.|.+++...|+++||..|+++++
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~ 74 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 74 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998888999999999999999999999999999999999999999999999999875
No 85
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.31 E-value=4.4e-12 Score=109.28 Aligned_cols=76 Identities=22% Similarity=0.441 Sum_probs=72.0
Q ss_pred eeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Q 005285 341 YIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQL 416 (704)
Q Consensus 341 ~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al~~~~ 416 (704)
.-.+||.++|.+||+.++++.++..++|+..||..|.||||+||.++|++|++.|++++...|+++||..|++++.
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~ 82 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 82 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4578999999999999999999888999999999999999999999999999999999999999999999999875
No 86
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.25 E-value=8e-12 Score=156.58 Aligned_cols=150 Identities=17% Similarity=0.156 Sum_probs=102.9
Q ss_pred cCCCccccceecCcccHHHHHHHHHHhC-C----------chhhhh------cCCc----------cCce--EEEEcCCC
Q 005285 164 SDTKSMYKEVVLGGDVWDLLDELMIYMG-N----------PMQYYE------RGVQ----------FVRG--VLLSGPPG 214 (704)
Q Consensus 164 ~~~~~~f~dVvG~~~~k~~L~elv~~l~-~----------p~~~~~------~g~~----------~p~g--vLL~GPPG 214 (704)
....++|+||-|.+++|+.+.+.+.+.- . +..|.. .|.. +|+| +|||||||
T Consensus 1013 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g 1092 (1706)
T 3cmw_A 1013 SASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 1092 (1706)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTT
T ss_pred ccCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCC
Confidence 4566899999999999988888776632 2 445555 2333 5566 99999999
Q ss_pred ChHHHHHHHHHHHc---CCCEEEEeCccccch-------------hhh----hHHHHHHHHHHHhhCCCeEEEEccchhh
Q 005285 215 TGKTLFARTLAKES---GLPFVFASGAEFTDS-------------EKS----GAARINEMFSIARRNAPAFVFVDEIDAI 274 (704)
Q Consensus 215 TGKT~LAraiA~e~---g~~~v~is~s~~~~~-------------~~~----g~~~vr~lF~~Ak~~~P~ILfIDEiDal 274 (704)
||||+||+++|.+. |-|.++|+..+.... .+. ++..++.+|..|+..+||+||+|++|+|
T Consensus 1093 ~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al 1172 (1706)
T 3cmw_A 1093 SGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAAL 1172 (1706)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGC
T ss_pred CChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhc
Confidence 99999999998865 678888888775422 123 6778999999999999999999999999
Q ss_pred hccCC-----CC--ChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCC
Q 005285 275 AGRHA-----RK--DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRP 323 (704)
Q Consensus 275 ~~~~~-----~~--~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p 323 (704)
.+++. +. ..-..+.++++|.+|++.....+ |+|| +||+.
T Consensus 1173 ~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~---------v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1173 TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN---------TLLI-FINQI 1218 (1706)
T ss_dssp CCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTT---------CEEE-EEECE
T ss_pred CcccccccccccccccHHHHHHHHHHHHHHhhhccCC---------eEEE-Eeccc
Confidence 87631 11 12345579999999998554333 6666 77874
No 87
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.23 E-value=4.7e-11 Score=126.64 Aligned_cols=125 Identities=12% Similarity=0.086 Sum_probs=97.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc------CCCEEEEeCccccchhhhhHHHHHHHHHHHhhCC----CeEEEEccchh
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKES------GLPFVFASGAEFTDSEKSGAARINEMFSIARRNA----PAFVFVDEIDA 273 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~------g~~~v~is~s~~~~~~~~g~~~vr~lF~~Ak~~~----P~ILfIDEiDa 273 (704)
+..+|||||||+|||++|+++|+.+ ...++.++++.- ..+...+|.+.+.+.... ..|+||||+|.
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~----~~~id~ir~li~~~~~~p~~~~~kvviIdead~ 93 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE----NIGIDDIRTIKDFLNYSPELYTRKYVIVHDCER 93 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS----CBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC----CCCHHHHHHHHHHHhhccccCCceEEEeccHHH
Confidence 4589999999999999999999874 346777765421 123445778887776432 47999999999
Q ss_pred hhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHH
Q 005285 274 IAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQI 353 (704)
Q Consensus 274 l~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~I 353 (704)
+.. ...|.|+..|+.... .+++|++||.+..+.+++++ | .+.|++|+.++..++
T Consensus 94 lt~----------~a~naLLk~LEep~~-----------~t~fIl~t~~~~kl~~tI~S--R---~~~f~~l~~~~i~~~ 147 (305)
T 2gno_A 94 MTQ----------QAANAFLKALEEPPE-----------YAVIVLNTRRWHYLLPTIKS--R---VFRVVVNVPKEFRDL 147 (305)
T ss_dssp BCH----------HHHHHTHHHHHSCCT-----------TEEEEEEESCGGGSCHHHHT--T---SEEEECCCCHHHHHH
T ss_pred hCH----------HHHHHHHHHHhCCCC-----------CeEEEEEECChHhChHHHHc--e---eEeCCCCCHHHHHHH
Confidence 842 357889999986433 36888888889999999999 8 899999999999999
Q ss_pred HHHHh
Q 005285 354 FDVHS 358 (704)
Q Consensus 354 l~~~l 358 (704)
++..+
T Consensus 148 L~~~~ 152 (305)
T 2gno_A 148 VKEKI 152 (305)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98776
No 88
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.21 E-value=4.5e-11 Score=155.76 Aligned_cols=146 Identities=23% Similarity=0.318 Sum_probs=98.8
Q ss_pred cCceEEEEcCCCChHHHHHHH-HHHHcCCCEEEEeCccccchhhhhHHHHHHHHHHH----h-----------hCCCeEE
Q 005285 203 FVRGVLLSGPPGTGKTLFART-LAKESGLPFVFASGAEFTDSEKSGAARINEMFSIA----R-----------RNAPAFV 266 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAra-iA~e~g~~~v~is~s~~~~~~~~g~~~vr~lF~~A----k-----------~~~P~IL 266 (704)
..+++||+||||||||++|+. ++...+.+++.++++..... ..+...++.. + ...++||
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~-----~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~Vl 1340 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTT-----EHILSALHRHTNYVTTSKGLTLLPKSDIKNLVL 1340 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCH-----HHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCH-----HHHHHHHHHHhhhccccCCccccCCCCCceEEE
Confidence 457999999999999999955 55555788888988776543 1233333322 0 1235899
Q ss_pred EEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCC-----CCcccccCCCccceeee
Q 005285 267 FVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPD-----ELDLEFVRPGRIDRRLY 341 (704)
Q Consensus 267 fIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~-----~LD~aLlRpgRfd~~I~ 341 (704)
||||+|.-...+. +.......+.+++ +..++..... ..+..-.++.+|||||.|. .|+++++| || ..+.
T Consensus 1341 FiDEinmp~~d~y-g~q~~lelLRq~l-e~gg~yd~~~-~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~vi~ 1414 (2695)
T 4akg_A 1341 FCDEINLPKLDKY-GSQNVVLFLRQLM-EKQGFWKTPE-NKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-AILY 1414 (2695)
T ss_dssp EEETTTCSCCCSS-SCCHHHHHHHHHH-HTSSEECTTT-CCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-EEEE
T ss_pred Eeccccccccccc-CchhHHHHHHHHH-hcCCEEEcCC-CcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-eEEE
Confidence 9999996533222 2233344555555 2223222111 1122225689999999995 79999999 99 7899
Q ss_pred eCCCCHHHHHHHHHHHhc
Q 005285 342 IGLPDAKQRVQIFDVHSA 359 (704)
Q Consensus 342 v~~Pd~~eR~~Il~~~l~ 359 (704)
++.|+.+++..|+..++.
T Consensus 1415 i~~P~~~~l~~I~~~il~ 1432 (2695)
T 4akg_A 1415 LGYPSGKSLSQIYEIYYK 1432 (2695)
T ss_dssp CCCCTTTHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHH
Confidence 999999999999987764
No 89
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.20 E-value=3.1e-11 Score=104.41 Aligned_cols=71 Identities=23% Similarity=0.466 Sum_probs=68.1
Q ss_pred CHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Q 005285 346 DAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQL 416 (704)
Q Consensus 346 d~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al~~~~ 416 (704)
|.++|.+||+.|+++.++..++|+..||..|.||||+||.++|++|++.|.+++...|+++||..|++++.
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~ 72 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVI 72 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHh
Confidence 56799999999999999999999999999999999999999999999999999999999999999999876
No 90
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.17 E-value=4.4e-11 Score=116.05 Aligned_cols=133 Identities=15% Similarity=0.102 Sum_probs=83.6
Q ss_pred CCccccceecC-cccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc----CCCEEEEeCccc
Q 005285 166 TKSMYKEVVLG-GDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES----GLPFVFASGAEF 240 (704)
Q Consensus 166 ~~~~f~dVvG~-~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~----g~~~v~is~s~~ 240 (704)
.+.+|+++++. ++.++.+..+..++.+. ....+.+++|+||||||||+|++++++.+ |..++++++.++
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~------~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~ 78 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALLTIRVFVHNF------NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDL 78 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHHHHHHHHHSC------CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHH
T ss_pred hhCccccccCCCHHHHHHHHHHHHHHHhc------cccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 45689998874 34455666666665543 22346789999999999999999999876 778888887776
Q ss_pred cchhhhhHH--HHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEE
Q 005285 241 TDSEKSGAA--RINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFIC 318 (704)
Q Consensus 241 ~~~~~~g~~--~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIa 318 (704)
......... ....+.... ..|.+|+|||++... .+......+..++..... .+..+|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~~~~-----~~~~~~~~l~~ll~~~~~-------------~~~~ii~ 138 (180)
T 3ec2_A 79 IFRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLGSER-----LSDWQRELISYIITYRYN-------------NLKSTII 138 (180)
T ss_dssp HHHHHHHHHHTCCSHHHHHH--HTCSEEEEETCSSSC-----CCHHHHHHHHHHHHHHHH-------------TTCEEEE
T ss_pred HHHHHHHhcCchHHHHHHHh--cCCCEEEEeCCCCCc-----CCHHHHHHHHHHHHHHHH-------------cCCCEEE
Confidence 554211100 011122222 257899999998552 234444556666655421 1246777
Q ss_pred EcCCCC
Q 005285 319 ATNRPD 324 (704)
Q Consensus 319 aTN~p~ 324 (704)
|||.+.
T Consensus 139 tsn~~~ 144 (180)
T 3ec2_A 139 TTNYSL 144 (180)
T ss_dssp ECCCCS
T ss_pred EcCCCh
Confidence 888754
No 91
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.10 E-value=1.8e-10 Score=98.32 Aligned_cols=71 Identities=30% Similarity=0.497 Sum_probs=67.6
Q ss_pred CHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Q 005285 346 DAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQL 416 (704)
Q Consensus 346 d~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al~~~~ 416 (704)
|.++|.+||+.|+++.++..++|+..||..|.||||+||.++|++|++.|.+++...|+++||..|+.++.
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ 72 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVI 72 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHc
Confidence 68899999999999999888999999999999999999999999999999999989999999999999864
No 92
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.99 E-value=4.6e-10 Score=110.66 Aligned_cols=102 Identities=17% Similarity=0.236 Sum_probs=66.8
Q ss_pred CCccccceecCc-ccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCcccc
Q 005285 166 TKSMYKEVVLGG-DVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFT 241 (704)
Q Consensus 166 ~~~~f~dVvG~~-~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~ 241 (704)
...+|+++++.+ ..++.+..+..++.+... ...|++++|+||||||||++|++++.++ +.+++++++.++.
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~ 94 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEYEP-----GKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELF 94 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHCCS-----SCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHhhh-----ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHH
Confidence 456899998876 344455555555543310 0134899999999999999999999877 7889999988765
Q ss_pred chhhhh--HHHHHHHHHHHhhCCCeEEEEccchhh
Q 005285 242 DSEKSG--AARINEMFSIARRNAPAFVFVDEIDAI 274 (704)
Q Consensus 242 ~~~~~g--~~~vr~lF~~Ak~~~P~ILfIDEiDal 274 (704)
...... ...+..++..... +.+|||||++..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~ 127 (202)
T 2w58_A 95 RELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAE 127 (202)
T ss_dssp HHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC
T ss_pred HHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCC
Confidence 432110 1112233333332 359999999765
No 93
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.96 E-value=1.9e-10 Score=97.98 Aligned_cols=69 Identities=29% Similarity=0.462 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Q 005285 348 KQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQL 416 (704)
Q Consensus 348 ~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al~~~~ 416 (704)
++|.+||+.|+++.++..++|+..||..|.||||+||.++|++|++.|++++...|+++|+..|+.++.
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~ 69 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQV 69 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHH
Confidence 479999999999988888999999999999999999999999999999999999999999999998764
No 94
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.94 E-value=2.7e-09 Score=116.71 Aligned_cols=214 Identities=21% Similarity=0.239 Sum_probs=121.2
Q ss_pred ccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccccchhhh
Q 005285 170 YKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKS 246 (704)
Q Consensus 170 f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~~~~~~ 246 (704)
|.+++|....-+.+.+.+..+.. ....|||+|++|||||++|+++.... +.||+.++|+.+.+....
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~----------~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISC----------AECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTT----------CCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhcC----------CCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 44567766544444444443322 24568999999999999999998765 469999999987653110
Q ss_pred ------------hH-HHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCcc
Q 005285 247 ------------GA-ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQA 313 (704)
Q Consensus 247 ------------g~-~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ 313 (704)
|+ .....+|+.|. ..+||||||+.+.. .....|+..|+...............+
T Consensus 206 ~elfg~~~g~~tga~~~~~g~~~~a~---~gtlfldei~~l~~----------~~q~~Ll~~l~~~~~~~~g~~~~~~~~ 272 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSSKEGFFELAD---GGTLFLDEIGELSL----------EAQAKLLRVIESGKFYRLGGRKEIEVN 272 (387)
T ss_dssp HHHHCBCTTSSTTCCSCBCCHHHHTT---TSEEEEESGGGCCH----------HHHHHHHHHHHHSEECCBTCCSBEECC
T ss_pred HHhcCCCCCCCCCcccccCCceeeCC---CcEEEEcChhhCCH----------HHHHHHHHHHhcCcEEeCCCCceeecc
Confidence 00 01123455553 35999999999842 245566666654321111111222345
Q ss_pred EEEEEEcCCCCCCcccccCCCccce-------eeeeCCCCHHHH----HHHHHHHhc----CCCcc-ccc---cHHHHHH
Q 005285 314 VIFICATNRPDELDLEFVRPGRIDR-------RLYIGLPDAKQR----VQIFDVHSA----GKQLA-EDV---NFEELVF 374 (704)
Q Consensus 314 ViVIaaTN~p~~LD~aLlRpgRfd~-------~I~v~~Pd~~eR----~~Il~~~l~----~~~l~-~dv---dl~~La~ 374 (704)
+.||+|||.. +.. +.+.|+|.. .+.+..|...+| ..+++.++. ..... ..+ .+..|..
T Consensus 273 ~rii~at~~~--l~~-~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~ 349 (387)
T 1ny5_A 273 VRILAATNRN--IKE-LVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLS 349 (387)
T ss_dssp CEEEEEESSC--HHH-HHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHH
T ss_pred EEEEEeCCCC--HHH-HHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh
Confidence 8899999963 111 222244421 345666666555 333343332 11111 112 2344444
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 005285 375 RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (704)
Q Consensus 375 ~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al 412 (704)
...--+-++|+|+++.|...+ ....|+.+|+...+
T Consensus 350 ~~wpGNvreL~~~i~~~~~~~---~~~~i~~~~l~~~~ 384 (387)
T 1ny5_A 350 YPWYGNVRELKNVIERAVLFS---EGKFIDRGELSCLV 384 (387)
T ss_dssp SCCTTHHHHHHHHHHHHHHHC---CSSEECHHHHHHHC
T ss_pred CCCCcHHHHHHHHHHHHHHhC---CCCcCcHHHCcHhh
Confidence 332224569999999988776 23578888875443
No 95
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.94 E-value=1.9e-09 Score=119.13 Aligned_cols=216 Identities=14% Similarity=0.107 Sum_probs=125.5
Q ss_pred eecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHH-HHHcCCCEEEEeCcc-----ccchh--
Q 005285 173 VVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTL-AKESGLPFVFASGAE-----FTDSE-- 244 (704)
Q Consensus 173 VvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LArai-A~e~g~~~v~is~s~-----~~~~~-- 244 (704)
|.|++++|..|.-.+ .....+ ++..-+|||.|+||| ||++|+++ +.-+.. .+++++.. +....
T Consensus 215 I~G~e~vK~aLll~L--~GG~~k-----~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR-~~ft~g~~ss~~gLt~s~r~ 285 (506)
T 3f8t_A 215 LPGAEEVGKMLALQL--FSCVGK-----NSERLHVLLAGYPVV-CSEILHHVLDHLAPR-GVYVDLRRTELTDLTAVLKE 285 (506)
T ss_dssp STTCHHHHHHHHHHH--TTCCSS-----GGGCCCEEEESCHHH-HHHHHHHHHHHTCSS-EEEEEGGGCCHHHHSEEEEE
T ss_pred cCCCHHHHHHHHHHH--cCCccc-----cCCceeEEEECCCCh-HHHHHHHHHHHhCCC-eEEecCCCCCccCceEEEEc
Confidence 667877765544322 111111 223347999999999 99999999 665543 22333211 11000
Q ss_pred hhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCC
Q 005285 245 KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPD 324 (704)
Q Consensus 245 ~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~ 324 (704)
..|...-...+..|. ..|+|||||+.+. ..++..|++.|+.....-. .. ..+..+.||||+|..+
T Consensus 286 ~tG~~~~~G~l~LAd---gGvl~lDEIn~~~----------~~~qsaLlEaMEe~~VtI~-G~-~lparf~VIAA~NP~~ 350 (506)
T 3f8t_A 286 DRGWALRAGAAVLAD---GGILAVDHLEGAP----------EPHRWALMEAMDKGTVTVD-GI-ALNARCAVLAAINPGE 350 (506)
T ss_dssp SSSEEEEECHHHHTT---TSEEEEECCTTCC----------HHHHHHHHHHHHHSEEEET-TE-EEECCCEEEEEECCCC
T ss_pred CCCcccCCCeeEEcC---CCeeehHhhhhCC----------HHHHHHHHHHHhCCcEEEC-CE-EcCCCeEEEEEeCccc
Confidence 000000011122332 2599999999884 3467788888876543222 11 3345689999999865
Q ss_pred -----------CCcccccCCCccceeee-eCCCCHHH-------------HHHHHHHHhc----CCCcccccc--HHHH-
Q 005285 325 -----------ELDLEFVRPGRIDRRLY-IGLPDAKQ-------------RVQIFDVHSA----GKQLAEDVN--FEEL- 372 (704)
Q Consensus 325 -----------~LD~aLlRpgRfd~~I~-v~~Pd~~e-------------R~~Il~~~l~----~~~l~~dvd--l~~L- 372 (704)
.|++++++ |||..+. ++.|+.+. ..+++. +.+ ...+.+++. +..+
T Consensus 351 ~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~-~ar~~~~~p~ls~ea~~yI~~~y 427 (506)
T 3f8t_A 351 QWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLL-YAIREHPAPELTEEARKRLEHWY 427 (506)
T ss_dssp --CCSCGGGGCCSCHHHHT--TCSEEEETTC--------------CCHHHHHHHHH-HHHHHCSCCEECHHHHHHHHHHH
T ss_pred ccCCCCCccccCCChHHhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHH-HHHhcCCCceeCHHHHHHHHHHH
Confidence 78889999 9987443 46665433 222222 222 122222210 1111
Q ss_pred -----HH--------hccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Q 005285 373 -----VF--------RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQ 415 (704)
Q Consensus 373 -----a~--------~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al~~~ 415 (704)
.. ...|.|++.+..|++-|...|.-+++..++.+|+..|+.-.
T Consensus 428 ~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~ 483 (506)
T 3f8t_A 428 ETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELV 483 (506)
T ss_dssp HHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHH
Confidence 10 24578999999999999999999999999999999998743
No 96
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.86 E-value=1.5e-07 Score=99.69 Aligned_cols=185 Identities=11% Similarity=0.099 Sum_probs=111.2
Q ss_pred ccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCcccc-----c
Q 005285 168 SMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT-----D 242 (704)
Q Consensus 168 ~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~-----~ 242 (704)
.....++|.++ ++..+.. +.. +.++++||+|+|||+|++.++++++.+++++++.... .
T Consensus 10 ~~~~~~~gR~~---el~~L~~-l~~------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (357)
T 2fna_A 10 DNRKDFFDREK---EIEKLKG-LRA------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYIS 73 (357)
T ss_dssp CSGGGSCCCHH---HHHHHHH-TCS------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCC
T ss_pred CCHHHhcChHH---HHHHHHH-hcC------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCC
Confidence 34566788764 4444444 432 3799999999999999999999988888888876531 0
Q ss_pred h---hhh---------------------------------------hHHHHHHHHHHHhhC--CCeEEEEccchhhhccC
Q 005285 243 S---EKS---------------------------------------GAARINEMFSIARRN--APAFVFVDEIDAIAGRH 278 (704)
Q Consensus 243 ~---~~~---------------------------------------g~~~vr~lF~~Ak~~--~P~ILfIDEiDal~~~~ 278 (704)
. ... ....+..++...... .|.+|+|||+|.+....
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~ 153 (357)
T 2fna_A 74 YKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLR 153 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCT
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccC
Confidence 0 000 011234444444332 38999999999985310
Q ss_pred CCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCc---------ccccCCCccceeeeeCCCCHHH
Q 005285 279 ARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELD---------LEFVRPGRIDRRLYIGLPDAKQ 349 (704)
Q Consensus 279 ~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD---------~aLlRpgRfd~~I~v~~Pd~~e 349 (704)
+......+..+..... ++.+|++++....+. ..+ .||+...+.+++.+.++
T Consensus 154 ---~~~~~~~l~~~~~~~~---------------~~~~i~~g~~~~~l~~~l~~~~~~~~l--~~r~~~~i~l~~l~~~e 213 (357)
T 2fna_A 154 ---GVNLLPALAYAYDNLK---------------RIKFIMSGSEMGLLYDYLRVEDPESPL--FGRAFSTVELKPFSREE 213 (357)
T ss_dssp ---TCCCHHHHHHHHHHCT---------------TEEEEEEESSHHHHHHHTTTTCTTSTT--TTCCCEEEEECCCCHHH
T ss_pred ---chhHHHHHHHHHHcCC---------------CeEEEEEcCchHHHHHHHhccCCCCcc--ccCccceeecCCCCHHH
Confidence 1122223333333211 255666655432111 112 24666789999999999
Q ss_pred HHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHH
Q 005285 350 RVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNE 390 (704)
Q Consensus 350 R~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~Lv~e 390 (704)
..+++...+.......+ +...+...+.|+ +.-+..++..
T Consensus 214 ~~~~l~~~~~~~~~~~~-~~~~i~~~t~G~-P~~l~~~~~~ 252 (357)
T 2fna_A 214 AIEFLRRGFQEADIDFK-DYEVVYEKIGGI-PGWLTYFGFI 252 (357)
T ss_dssp HHHHHHHHHHHHTCCCC-CHHHHHHHHCSC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCC-cHHHHHHHhCCC-HHHHHHHHHH
Confidence 99999876542222222 237888888886 5556666543
No 97
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.85 E-value=1.1e-08 Score=96.81 Aligned_cols=59 Identities=14% Similarity=0.277 Sum_probs=48.1
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccccchhhhhHHHHHHHHHHHhhCCCeEEEEccchhhh
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIA 275 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~~~~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~ 275 (704)
....++|+||+|+|||+|++++++.+ |..++++++.++... +....|.+|+|||++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~--------------~~~~~~~lLilDE~~~~~ 96 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT--------------DAAFEAEYLAVDQVEKLG 96 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC--------------GGGGGCSEEEEESTTCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH--------------HHHhCCCEEEEeCccccC
Confidence 34679999999999999999999977 778999998887654 112357899999998763
No 98
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.83 E-value=2.4e-07 Score=97.86 Aligned_cols=189 Identities=18% Similarity=0.111 Sum_probs=108.6
Q ss_pred CccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCcccc-----
Q 005285 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT----- 241 (704)
Q Consensus 167 ~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~----- 241 (704)
...-..++|.++..+.|.+.+.. | +.++|+||+|+|||+|++.++++.+ ++++++....
T Consensus 8 ~~~~~~~~gR~~el~~L~~~l~~----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~ 71 (350)
T 2qen_A 8 KTRREDIFDREEESRKLEESLEN----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGH 71 (350)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHH----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTC
T ss_pred CCChHhcCChHHHHHHHHHHHhc----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccC
Confidence 33445678887655555544331 1 5799999999999999999999886 7777765431
Q ss_pred -ch--h-h---h-------------------h------HHHHHHHHH----HHhhCCCeEEEEccchhhhccCCCCChhH
Q 005285 242 -DS--E-K---S-------------------G------AARINEMFS----IARRNAPAFVFVDEIDAIAGRHARKDPRR 285 (704)
Q Consensus 242 -~~--~-~---~-------------------g------~~~vr~lF~----~Ak~~~P~ILfIDEiDal~~~~~~~~~e~ 285 (704)
.. . . . + ...+..++. .+....|.+|+|||+|.+.......+...
T Consensus 72 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~ 151 (350)
T 2qen_A 72 ITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKEL 151 (350)
T ss_dssp BCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHH
T ss_pred CCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhH
Confidence 00 0 0 0 0 011222332 23323489999999999853100011222
Q ss_pred HHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCc---------ccccCCCccceeeeeCCCCHHHHHHHHHH
Q 005285 286 RATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELD---------LEFVRPGRIDRRLYIGLPDAKQRVQIFDV 356 (704)
Q Consensus 286 ~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD---------~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~ 356 (704)
...+..++... .++.+|+++.....+. ..+. ||+...+.+++.+.++..+++..
T Consensus 152 ~~~L~~~~~~~---------------~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~~ 214 (350)
T 2qen_A 152 LALFAYAYDSL---------------PNLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSVEFLKR 214 (350)
T ss_dssp HHHHHHHHHHC---------------TTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhc---------------CCeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHHHHHHH
Confidence 22333332221 1255565554321111 1222 46667899999999999999987
Q ss_pred HhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHH
Q 005285 357 HSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVN 389 (704)
Q Consensus 357 ~l~~~~l~-~dvdl~~La~~t~G~sgadL~~Lv~ 389 (704)
.+...... .+..+..+...+.|+ +.-+..++.
T Consensus 215 ~~~~~~~~~~~~~~~~i~~~tgG~-P~~l~~~~~ 247 (350)
T 2qen_A 215 GFREVNLDVPENEIEEAVELLDGI-PGWLVVFGV 247 (350)
T ss_dssp HHHTTTCCCCHHHHHHHHHHHTTC-HHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHHhCCC-HHHHHHHHH
Confidence 66433222 233567788888886 455665554
No 99
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.79 E-value=2.7e-09 Score=113.11 Aligned_cols=119 Identities=13% Similarity=0.150 Sum_probs=71.3
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeC--ccccchh-hhhHHHHHHHHHHHhhCCCeEEEEccchhhhc
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASG--AEFTDSE-KSGAARINEMFSIARRNAPAFVFVDEIDAIAG 276 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~--s~~~~~~-~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~ 276 (704)
|....+.++|+||||||||+||.++|.+.|.++++++. .+..... ......+..+++...... +||||+++++..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~ 196 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIG 196 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccc
Confidence 44455667999999999999999999876555444443 3322221 223334555566565554 999999999954
Q ss_pred cCCC--CChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCcccc
Q 005285 277 RHAR--KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEF 330 (704)
Q Consensus 277 ~~~~--~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aL 330 (704)
...+ ......+.+.+++..|.++.... ++.+|+++| +...|+++
T Consensus 197 ~~~~~s~~G~v~~~lrqlL~~L~~~~k~~---------gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 197 AAGGNTTSGGISRGAFDLLSDIGAMAASR---------GCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHH---------TCEEEEECC-CSSCSSSH
T ss_pred ccccccccchHHHHHHHHHHHHHHHHhhC---------CCEEEEEeC-CcccchhH
Confidence 3221 01112345667777776643322 367888888 56666654
No 100
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.77 E-value=7.5e-09 Score=109.72 Aligned_cols=100 Identities=15% Similarity=0.253 Sum_probs=62.5
Q ss_pred CccccceecCc-ccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc----CCCEEEEeCcccc
Q 005285 167 KSMYKEVVLGG-DVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES----GLPFVFASGAEFT 241 (704)
Q Consensus 167 ~~~f~dVvG~~-~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~----g~~~v~is~s~~~ 241 (704)
+.+|+++++.+ ..+..+..+..|+.+.. ...+.+++|+||||||||+||+++|.++ |.+++++++.++.
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~~------~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~ 193 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQYP------SAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHCS------CSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhcc------ccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHH
Confidence 46899998765 33344444555554321 1135799999999999999999998754 5889999888765
Q ss_pred chhhh--hHHHHHHHHHHHhhCCCeEEEEccchhh
Q 005285 242 DSEKS--GAARINEMFSIARRNAPAFVFVDEIDAI 274 (704)
Q Consensus 242 ~~~~~--g~~~vr~lF~~Ak~~~P~ILfIDEiDal 274 (704)
..... ........+.... .+.+|||||++..
T Consensus 194 ~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 194 IDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp HHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred HHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 43211 0111112222222 3469999999765
No 101
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.76 E-value=2.7e-08 Score=108.01 Aligned_cols=198 Identities=20% Similarity=0.239 Sum_probs=111.1
Q ss_pred cceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCC--CEEEEeCccccchhhhhH
Q 005285 171 KEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGL--PFVFASGAEFTDSEKSGA 248 (704)
Q Consensus 171 ~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~--~~v~is~s~~~~~~~~g~ 248 (704)
.+++|.......+.+.+..+.. ....+|++|++||||+++|+++....+. +|+.++|+.+.+......
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~----------~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAK----------SKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHT----------SCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred ccccccchHHHHHHhhhhhhhc----------cchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 3566776555555555443322 2345999999999999999999887654 399999998765421110
Q ss_pred -------------HHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEE
Q 005285 249 -------------ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVI 315 (704)
Q Consensus 249 -------------~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~Vi 315 (704)
......|+.|.. ..||||||+.+.. .....|+..++..............-.+.
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l~~----------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~r 265 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELADQ---GTLFLDEVGELDQ----------RVQAKLLRVLETGSFTRLGGNQKIEVDIR 265 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHTTT---SEEEEETGGGSCH----------HHHHHHHHHHHHSEECCBTCCCBEECCCE
T ss_pred hcCccccccCCcccccCChHhhcCC---CeEEecChhhCCH----------HHHHHHHHHHHhCCcccCCCCcceeeeeE
Confidence 011234555533 4899999999942 34566676665432211111112233578
Q ss_pred EEEEcCCCCCCcccccCCCccce-------eeeeCCCCHHHH----HHHHHHHhcC----C--C---ccccccHHHHHHh
Q 005285 316 FICATNRPDELDLEFVRPGRIDR-------RLYIGLPDAKQR----VQIFDVHSAG----K--Q---LAEDVNFEELVFR 375 (704)
Q Consensus 316 VIaaTN~p~~LD~aLlRpgRfd~-------~I~v~~Pd~~eR----~~Il~~~l~~----~--~---l~~dvdl~~La~~ 375 (704)
+|+|||.. +.. ....|+|.. .+.+..|...+| ..+++.++.. . . +. +..+..|...
T Consensus 266 ii~at~~~--l~~-~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~-~~a~~~L~~~ 341 (368)
T 3dzd_A 266 VISATNKN--LEE-EIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELS-EETKEYLMKQ 341 (368)
T ss_dssp EEEEESSC--HHH-HHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBC-HHHHHHHHTC
T ss_pred EEEecCCC--HHH-HHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcC-HHHHHHHHhC
Confidence 99999852 222 222244422 445555555444 4444444321 1 1 22 1224455544
Q ss_pred ccCCCHHHHHHHHHHHHHHH
Q 005285 376 TVGFSGADIRNLVNESGIMS 395 (704)
Q Consensus 376 t~G~sgadL~~Lv~eA~~~A 395 (704)
.---+-++|.|+++.|...+
T Consensus 342 ~wpGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 342 EWKGNVRELKNLIERAVILC 361 (368)
T ss_dssp CCTTHHHHHHHHHHHHHHTC
T ss_pred CCCcHHHHHHHHHHHHHHhC
Confidence 42234578888888877654
No 102
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.71 E-value=1.3e-08 Score=110.92 Aligned_cols=120 Identities=17% Similarity=0.150 Sum_probs=79.4
Q ss_pred cCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccchhhhhHHHHHHHHHHHhhCCCeEEEEccchhhhc-c
Q 005285 199 RGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAG-R 277 (704)
Q Consensus 199 ~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~-~ 277 (704)
.+++.+..++|+||||+|||++++++++..+..++.+...+- .. ...+.. ....+++|+||++.+.. .
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~--~~---~~~lg~------~~q~~~~l~dd~~~~~~~~ 232 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD--RL---NFELGV------AIDQFLVVFEDVKGTGGES 232 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT--TH---HHHHGG------GTTCSCEEETTCCCSTTTT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch--hH---HHHHHH------hcchhHHHHHHHHHHHHHH
Confidence 467788899999999999999999999988776654332210 00 001111 12346789999998864 1
Q ss_pred CCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCC
Q 005285 278 HARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGL 344 (704)
Q Consensus 278 ~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~ 344 (704)
+.............+...++|. +.|+++||+++.+ +++++|||++..+....
T Consensus 233 r~l~~~~~~~~~~~l~~~ldG~--------------v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 233 RDLPSGQGINNLDNLRDYLDGS--------------VKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTCCCCSHHHHHHTTHHHHHCS--------------SCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred hhccccCcchHHHHHHHHhcCC--------------CeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 1111111111334555666652 4678889999999 79999999998777654
No 103
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.69 E-value=1.4e-07 Score=123.39 Aligned_cols=191 Identities=18% Similarity=0.218 Sum_probs=120.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccchhhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCCh
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDP 283 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~ 283 (704)
..|+++.||||||||.+++++|+.+|.+++.++|++-.... .+..+|..+... ++.+++||++.+. .
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~-----~lg~~~~g~~~~-Gaw~~~DE~nr~~-------~ 711 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQ-----VLSRLLVGITQI-GAWGCFDEFNRLD-------E 711 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHH-----HHHHHHHHHHHH-TCEEEEETTTSSC-------H
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChh-----HhhHHHHHHHhc-CCEeeehhhhhcC-------h
Confidence 46899999999999999999999999999999999876642 245566666554 3799999999773 2
Q ss_pred hHHHHHHHHHHH----hcCCcc--cCCccccccCccEEEEEEcCC----CCCCcccccCCCccceeeeeCCCCHHHHHHH
Q 005285 284 RRRATFEALIAQ----LDGDKE--RTGIDRFSLRQAVIFICATNR----PDELDLEFVRPGRIDRRLYIGLPDAKQRVQI 353 (704)
Q Consensus 284 e~~~~ln~LL~~----ld~~~~--~~~~~~~~~~~~ViVIaaTN~----p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~I 353 (704)
+....+++.+.. +..... ...+..........|++|.|. ...|++++++ || +.|.+..||.+...+|
T Consensus 712 evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~~i~ei 788 (2695)
T 4akg_A 712 KVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSGTIAEM 788 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHHHHHHH
Confidence 334444333332 211110 001112333455778888883 4578999998 99 8899999999998888
Q ss_pred HHHHhcCCCcccc-----ccHHHHHH-h-----ccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Q 005285 354 FDVHSAGKQLAED-----VNFEELVF-R-----TVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414 (704)
Q Consensus 354 l~~~l~~~~l~~d-----vdl~~La~-~-----t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al~~ 414 (704)
+-... +...+.. +.+-.+++ . ...|.-+.+..+++.|........ -....+.+|+..
T Consensus 789 ~l~s~-Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~lkr~~~---~e~~~l~~al~~ 856 (2695)
T 4akg_A 789 ILQIM-GFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPLISEFG---EGEKTVVESLKR 856 (2695)
T ss_dssp HHHHH-HCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHHHHHSC---SSHHHHHHHHHH
T ss_pred HHHhc-CCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHhhccCC---cHHHHHHHHHHH
Confidence 54322 1111111 11111221 1 234778899999988765543321 223344455544
No 104
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.63 E-value=3.6e-08 Score=98.02 Aligned_cols=131 Identities=20% Similarity=0.265 Sum_probs=82.6
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHH--------cC-CCEEEEeCccccchhh-----------hhHH--HHHHHHHHH--
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKE--------SG-LPFVFASGAEFTDSEK-----------SGAA--RINEMFSIA-- 258 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e--------~g-~~~v~is~s~~~~~~~-----------~g~~--~vr~lF~~A-- 258 (704)
.+...|++|+||||||++|.+.+.. .| .+++..++.++..... .... ....+++.+
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 83 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKK 83 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTS
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhc
Confidence 3456899999999999999886433 45 7777777665532110 0000 112344432
Q ss_pred hhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccce
Q 005285 259 RRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDR 338 (704)
Q Consensus 259 k~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~ 338 (704)
.....+||+|||++.+.+.+....+. ..++..+.... ..++-+|.+|+.++.|+.++++ |++.
T Consensus 84 ~~~~~~vliIDEAq~l~~~~~~~~e~-----~rll~~l~~~r----------~~~~~iil~tq~~~~l~~~lr~--ri~~ 146 (199)
T 2r2a_A 84 PENIGSIVIVDEAQDVWPARSAGSKI-----PENVQWLNTHR----------HQGIDIFVLTQGPKLLDQNLRT--LVRK 146 (199)
T ss_dssp GGGTTCEEEETTGGGTSBCCCTTCCC-----CHHHHGGGGTT----------TTTCEEEEEESCGGGBCHHHHT--TEEE
T ss_pred cccCceEEEEEChhhhccCccccchh-----HHHHHHHHhcC----------cCCeEEEEECCCHHHHhHHHHH--Hhhe
Confidence 23347899999999996543211111 12444443321 2236778888889999999888 9999
Q ss_pred eeeeCCCCHHHH
Q 005285 339 RLYIGLPDAKQR 350 (704)
Q Consensus 339 ~I~v~~Pd~~eR 350 (704)
++++..|....+
T Consensus 147 ~~~l~~~~~~~~ 158 (199)
T 2r2a_A 147 HYHIASNKMGMR 158 (199)
T ss_dssp EEEEEECSSCCE
T ss_pred EEEEcCcccCcc
Confidence 999988755433
No 105
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.42 E-value=2.7e-07 Score=117.39 Aligned_cols=105 Identities=19% Similarity=0.293 Sum_probs=75.8
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccccch-----hh------------hhHHHHHHHHHHHh
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDS-----EK------------SGAARINEMFSIAR 259 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~~~-----~~------------~g~~~vr~lF~~Ak 259 (704)
|++.+++++|+||||||||+||.+++.++ |..+.+++..+.... .+ .++..++.++..++
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 47788999999999999999999997764 667888887754322 11 22355677778888
Q ss_pred hCCCeEEEEccchhhhccC-----CCC-Ch-hHHHHHHHHHHHhcCCcccCC
Q 005285 260 RNAPAFVFVDEIDAIAGRH-----ARK-DP-RRRATFEALIAQLDGDKERTG 304 (704)
Q Consensus 260 ~~~P~ILfIDEiDal~~~~-----~~~-~~-e~~~~ln~LL~~ld~~~~~~~ 304 (704)
..+|++||||+++++.+.. .+. +. ...+.++++|.+|.+.....+
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~ 1554 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN 1554 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTT
T ss_pred cCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCC
Confidence 8999999999999887532 111 11 135677888888887655443
No 106
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.38 E-value=3.2e-07 Score=91.17 Aligned_cols=32 Identities=19% Similarity=0.271 Sum_probs=26.8
Q ss_pred CccCceEEEEcCCCChHHHHHHHHHHHcCCCE
Q 005285 201 VQFVRGVLLSGPPGTGKTLFARTLAKESGLPF 232 (704)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~ 232 (704)
.+..+++|||||||||||++|.++|+.++-.+
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i 86 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQGAV 86 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHTCEE
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 33446899999999999999999999986544
No 107
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.27 E-value=4.2e-06 Score=89.32 Aligned_cols=176 Identities=12% Similarity=0.087 Sum_probs=112.2
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc---CC-CEEEEeCccccchhhhhHHHHHHHHHHHhh----CCCeEEEEccchh-
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES---GL-PFVFASGAEFTDSEKSGAARINEMFSIARR----NAPAFVFVDEIDA- 273 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~---g~-~~v~is~s~~~~~~~~g~~~vr~lF~~Ak~----~~P~ILfIDEiDa- 273 (704)
.+..+|||||+|+||+..++++++.+ +. ++..+... . ...++.+.+.+.. ....|++|||+|.
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~-----~~~~~~l~~~~~~~plf~~~kvvii~~~~~k 88 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID---P-----NTDWNAIFSLCQAMSLFASRQTLLLLLPENG 88 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC---T-----TCCHHHHHHHHHHHHHCCSCEEEEEECCSSC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec---C-----CCCHHHHHHHhcCcCCccCCeEEEEECCCCC
Confidence 56689999999999999999998754 32 32222111 1 1224455544432 3457999999997
Q ss_pred hhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCC------CCCcccccCCCccceeeeeCCCCH
Q 005285 274 IAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRP------DELDLEFVRPGRIDRRLYIGLPDA 347 (704)
Q Consensus 274 l~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p------~~LD~aLlRpgRfd~~I~v~~Pd~ 347 (704)
+.. ...+.|+..++..... +++|.+|+.+ ..+.+++.+ |+ ..+.+.+++.
T Consensus 89 l~~----------~~~~aLl~~le~p~~~-----------~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~ 144 (343)
T 1jr3_D 89 PNA----------AINEQLLTLTGLLHDD-----------LLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQ 144 (343)
T ss_dssp CCT----------THHHHHHHHHTTCBTT-----------EEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCT
T ss_pred CCh----------HHHHHHHHHHhcCCCC-----------eEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCH
Confidence 632 1457788888754322 4455444443 346677777 66 5789999999
Q ss_pred HHHHHHHHHHhcCCCcccc-ccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Q 005285 348 KQRVQIFDVHSAGKQLAED-VNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414 (704)
Q Consensus 348 ~eR~~Il~~~l~~~~l~~d-vdl~~La~~t~G~sgadL~~Lv~eA~~~A~r~~~~~It~~dl~~Al~~ 414 (704)
.+..+.++..+....+.-+ ..+..|+..+.| +.+++.+.++..+.++ +...||.+++.+.+..
T Consensus 145 ~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~l~~---~~~~It~e~V~~~~~~ 208 (343)
T 1jr3_D 145 AQLPRWVAARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLSLLW---PDGKLTLPRVEQAVND 208 (343)
T ss_dssp THHHHHHHHHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHHHHC---TTCEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHHHhc---CCCCCCHHHHHHHHhh
Confidence 9999888877765554322 235566665444 5555555555555443 3457999998877654
No 108
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.25 E-value=2.4e-06 Score=112.72 Aligned_cols=144 Identities=22% Similarity=0.316 Sum_probs=91.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHH-HcCCCEEEEeCccccchhhhhHHHHHHHHHHH----h------------hCCCeEE
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAK-ESGLPFVFASGAEFTDSEKSGAARINEMFSIA----R------------RNAPAFV 266 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~-e~g~~~v~is~s~~~~~~~~g~~~vr~lF~~A----k------------~~~P~IL 266 (704)
.++|||+||||||||.+++.... ..+.+++.++++.-... ..+...++.. + ....+|+
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta-----~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~Vl 1378 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTP-----ELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVV 1378 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCH-----HHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCH-----HHHHHHHhhcceEEeccCCCcccCCCcCCceEEE
Confidence 46799999999999987765544 44667888888875543 1222333210 0 1223699
Q ss_pred EEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCC-----CCcccccCCCccceeee
Q 005285 267 FVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPD-----ELDLEFVRPGRIDRRLY 341 (704)
Q Consensus 267 fIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~-----~LD~aLlRpgRfd~~I~ 341 (704)
||||++.-.... -+.......+.+++.. .++..... ..+..-.++.+|||+|.|. .|+++++| || ..+.
T Consensus 1379 FiDDiNmp~~D~-yGtQ~~ielLrqlld~-~g~yd~~~-~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F-~vi~ 1452 (3245)
T 3vkg_A 1379 FCDEINLPSTDK-YGTQRVITFIRQMVEK-GGFWRTSD-HTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HA-PILL 1452 (3245)
T ss_dssp EETTTTCCCCCT-TSCCHHHHHHHHHHHH-SEEEETTT-TEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TC-CEEE
T ss_pred EecccCCCCccc-cccccHHHHHHHHHHc-CCeEECCC-CeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hc-eEEE
Confidence 999998532111 2222334455555543 12222111 1122335789999999883 58999999 99 4699
Q ss_pred eCCCCHHHHHHHHHHHh
Q 005285 342 IGLPDAKQRVQIFDVHS 358 (704)
Q Consensus 342 v~~Pd~~eR~~Il~~~l 358 (704)
++.|+.+....|+..++
T Consensus 1453 i~~ps~esL~~If~til 1469 (3245)
T 3vkg_A 1453 VDFPSTSSLTQIYGTFN 1469 (3245)
T ss_dssp CCCCCHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 99999999999977543
No 109
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.08 E-value=8.9e-06 Score=84.10 Aligned_cols=28 Identities=32% Similarity=0.385 Sum_probs=24.6
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCC
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESGL 230 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g~ 230 (704)
+..+++||||||||||++|+|+|+..+.
T Consensus 103 ~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 103 KRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 3468999999999999999999997654
No 110
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.07 E-value=8.7e-06 Score=90.68 Aligned_cols=126 Identities=15% Similarity=0.287 Sum_probs=96.5
Q ss_pred CeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEE---------cC---CCCCCcccc
Q 005285 263 PAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICA---------TN---RPDELDLEF 330 (704)
Q Consensus 263 P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaa---------TN---~p~~LD~aL 330 (704)
|.|+||||+|.+. ....+.|+..|+.... .++|+++ |+ .++.|++.+
T Consensus 296 ~~VliIDEa~~l~----------~~a~~aLlk~lEe~~~-----------~~~il~tn~~~~~i~~~~~~~~~~~l~~~i 354 (456)
T 2c9o_A 296 PGVLFVDEVHMLD----------IECFTYLHRALESSIA-----------PIVIFASNRGNCVIRGTEDITSPHGIPLDL 354 (456)
T ss_dssp ECEEEEESGGGCB----------HHHHHHHHHHTTSTTC-----------CEEEEEECCSEEECBTTSSCEEETTCCHHH
T ss_pred ceEEEEechhhcC----------HHHHHHHHHHhhccCC-----------CEEEEecCCccccccccccccccccCChhH
Confidence 4699999999994 3478899998876432 2444444 32 267889999
Q ss_pred cCCCccceeeeeCCCCHHHHHHHHHHHhcC--CCccccccHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHhCCCcccHHH
Q 005285 331 VRPGRIDRRLYIGLPDAKQRVQIFDVHSAG--KQLAEDVNFEELVFRT-VGFSGADIRNLVNESGIMSVRKGHSKIQQQD 407 (704)
Q Consensus 331 lRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~--~~l~~dvdl~~La~~t-~G~sgadL~~Lv~eA~~~A~r~~~~~It~~d 407 (704)
++ ||.. +.|++|+.++..++++..+.. ..+. +..+..++... .| +++..-++++.|...|..++...|+.+|
T Consensus 355 ~s--R~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~-~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~~~~~v~~~~ 429 (456)
T 2c9o_A 355 LD--RVMI-IRTMLYTPQEMKQIIKIRAQTEGINIS-EEALNHLGEIGTKT-TLRYSVQLLTPANLLAKINGKDSIEKEH 429 (456)
T ss_dssp HT--TEEE-EECCCCCHHHHHHHHHHHHHHHTCCBC-HHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHTTCSSBCHHH
T ss_pred Hh--hcce-eeCCCCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhhcCCCccCHHH
Confidence 99 9965 699999999999999977642 2233 22356677766 44 7888899999999999999999999999
Q ss_pred HHHHHHH
Q 005285 408 IVDVLDK 414 (704)
Q Consensus 408 l~~Al~~ 414 (704)
+.+|+.-
T Consensus 430 v~~~~~~ 436 (456)
T 2c9o_A 430 VEEISEL 436 (456)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998865
No 111
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.05 E-value=1.2e-05 Score=106.20 Aligned_cols=174 Identities=20% Similarity=0.200 Sum_probs=109.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccchhhhhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCCh
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDP 283 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~~~~~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~ 283 (704)
..|..+.||+|||||.+++.+|+.+|.+++.++|++-.... .+..+|.-+... .+..++||++.+- .
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~-----~~g~i~~G~~~~-GaW~cfDEfNrl~-------~ 670 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQ-----AMSRIFVGLCQC-GAWGCFDEFNRLE-------E 670 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHH-----HHHHHHHHHHHH-TCEEEEETTTSSC-------H
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHH-----HHHHHHhhHhhc-CcEEEehhhhcCC-------H
Confidence 36788999999999999999999999999999999866543 234455544443 3688999999872 2
Q ss_pred hHHHHHHHHHHHh----cCCcccCC---ccccccCccEEEEEEcCC----CCCCcccccCCCccceeeeeCCCCHHHHHH
Q 005285 284 RRRATFEALIAQL----DGDKERTG---IDRFSLRQAVIFICATNR----PDELDLEFVRPGRIDRRLYIGLPDAKQRVQ 352 (704)
Q Consensus 284 e~~~~ln~LL~~l----d~~~~~~~---~~~~~~~~~ViVIaaTN~----p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~ 352 (704)
+.-..+.+.+..+ ......-. +.......+..|++|.|. ...|+++|.. || |.|.+..||.+...+
T Consensus 671 ~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~~i~e 747 (3245)
T 3vkg_A 671 RILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDREMIAQ 747 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHHHHHH
Confidence 3333333322211 11100000 112334456788888884 4579999998 99 789999999999888
Q ss_pred HHHHHhcCCCcccc-----ccHHHHHHh------ccCCCHHHHHHHHHHHHHH
Q 005285 353 IFDVHSAGKQLAED-----VNFEELVFR------TVGFSGADIRNLVNESGIM 394 (704)
Q Consensus 353 Il~~~l~~~~l~~d-----vdl~~La~~------t~G~sgadL~~Lv~eA~~~ 394 (704)
|+-.- .+..-+.. +.+-.+++. ...|.-+.|..++..|...
T Consensus 748 i~L~s-~Gf~~a~~La~k~~~~~~l~~e~LS~Q~HYDfGLRalKsVL~~AG~l 799 (3245)
T 3vkg_A 748 VMLYS-QGFKTAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSAGGI 799 (3245)
T ss_dssp HHHHT-TTCSCHHHHHHHHHHHHHHHHHSSCCCTTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHH-cccchHHHHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Confidence 85432 12111111 111122221 2346677788888777654
No 112
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.94 E-value=4.4e-05 Score=74.17 Aligned_cols=28 Identities=25% Similarity=0.621 Sum_probs=24.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCEE
Q 005285 206 GVLLSGPPGTGKTLFARTLAKESGLPFV 233 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~g~~~v 233 (704)
.+.|.||+|+|||||++.+++.+++.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~ 29 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAI 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCC
Confidence 4789999999999999999998876543
No 113
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.89 E-value=4.8e-05 Score=76.15 Aligned_cols=77 Identities=17% Similarity=0.077 Sum_probs=51.8
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHH--c-------CCCEEEEeCccccch---------hhh---------------
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE--S-------GLPFVFASGAEFTDS---------EKS--------------- 246 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e--~-------g~~~v~is~s~~~~~---------~~~--------------- 246 (704)
|++...-++|+||||+|||+|++.+|.. . +...+++++.+.... .+.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 4556677899999999999999999985 2 456888887662100 000
Q ss_pred -hH---HHHHHHHHHHhhCCCeEEEEccchhhhc
Q 005285 247 -GA---ARINEMFSIARRNAPAFVFVDEIDAIAG 276 (704)
Q Consensus 247 -g~---~~vr~lF~~Ak~~~P~ILfIDEiDal~~ 276 (704)
.. ..+..+...+....|.+|+|||+..+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 00 1122234444556799999999998864
No 114
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.82 E-value=2.7e-05 Score=76.76 Aligned_cols=40 Identities=23% Similarity=0.185 Sum_probs=34.0
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCcc
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAE 239 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~ 239 (704)
|++...-++|+||||+|||+|++.+|...+.++++++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4555667899999999999999999987688888888765
No 115
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.81 E-value=6.3e-05 Score=81.42 Aligned_cols=77 Identities=25% Similarity=0.319 Sum_probs=52.6
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccccchh-----h------------hhHHHHHHHHHHHh
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSE-----K------------SGAARINEMFSIAR 259 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~~~~-----~------------~g~~~vr~lF~~Ak 259 (704)
|++....++|+||||+|||+||..+|.++ |.++++++...-.... + .....+..+....+
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 45666789999999999999999998754 6788889876533221 0 01111222222334
Q ss_pred hCCCeEEEEccchhhhc
Q 005285 260 RNAPAFVFVDEIDAIAG 276 (704)
Q Consensus 260 ~~~P~ILfIDEiDal~~ 276 (704)
...+.+|+||.+..+..
T Consensus 150 ~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTP 166 (366)
T ss_dssp TTCCSEEEEECTTTCCC
T ss_pred cCCCCEEEEeChHHhcc
Confidence 46789999999999974
No 116
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.76 E-value=4.7e-05 Score=81.92 Aligned_cols=77 Identities=22% Similarity=0.298 Sum_probs=52.4
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccccchh-----h------------hhHHHHHHHHHHHh
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSE-----K------------SGAARINEMFSIAR 259 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~~~~-----~------------~g~~~vr~lF~~Ak 259 (704)
|++...-++|+||||+|||+||..+|..+ |.++++++...-.... + .....+..+...++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 45566779999999999999999998654 6788888876533211 1 01111222223344
Q ss_pred hCCCeEEEEccchhhhc
Q 005285 260 RNAPAFVFVDEIDAIAG 276 (704)
Q Consensus 260 ~~~P~ILfIDEiDal~~ 276 (704)
...|.+|+||++.++..
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 56799999999999863
No 117
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.75 E-value=0.00015 Score=71.57 Aligned_cols=40 Identities=33% Similarity=0.586 Sum_probs=30.6
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCcc
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAE 239 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~ 239 (704)
|++....++|+||||+|||+|++.++... +.++++++...
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~ 61 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE 61 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence 34555678999999999999999998653 56777766543
No 118
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.73 E-value=0.00018 Score=72.22 Aligned_cols=129 Identities=25% Similarity=0.259 Sum_probs=72.5
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHH--HH--cCCCEEEEeCccccchh-------h-----------------------
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLA--KE--SGLPFVFASGAEFTDSE-------K----------------------- 245 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA--~e--~g~~~v~is~s~~~~~~-------~----------------------- 245 (704)
|++...-+.|.||+|+|||+|++.++ .. .+...++++........ +
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 105 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVG 105 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccc
Confidence 34556679999999999999999998 32 35566666654321100 0
Q ss_pred -------------hhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCc
Q 005285 246 -------------SGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQ 312 (704)
Q Consensus 246 -------------~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~ 312 (704)
........+........|.+|+|||.-++.... .........+..++..+...
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~-~d~~~~~~~l~~l~~~l~~~------------- 171 (251)
T 2ehv_A 106 LPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRL-EEERKIREVLLKLNTILLEM------------- 171 (251)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHS-SSGGGHHHHHHHHHHHHHHH-------------
T ss_pred cccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhc-CCHHHHHHHHHHHHHHHHHC-------------
Confidence 001112223333445789999999998886421 11223444566777666321
Q ss_pred cEEEEEEcCCCCCCc-----ccccCCCcc-ceeeeeCC
Q 005285 313 AVIFICATNRPDELD-----LEFVRPGRI-DRRLYIGL 344 (704)
Q Consensus 313 ~ViVIaaTN~p~~LD-----~aLlRpgRf-d~~I~v~~ 344 (704)
++.||.+|+..+... +.+.. -+ |+.+.+..
T Consensus 172 g~tii~vtH~~~~~~~~~~~~~i~~--~~aD~vi~l~~ 207 (251)
T 2ehv_A 172 GVTTILTTEAPDPQHGKLSRYGIEE--FIARGVIVLDL 207 (251)
T ss_dssp CCEEEEEECCC----CCSSSSSCGG--GGCSEEEEEEE
T ss_pred CCeEEEEECCCCCCcccccccChhh--EeeeEEEEEee
Confidence 246677777655442 22222 45 77666643
No 119
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.73 E-value=6e-05 Score=80.05 Aligned_cols=100 Identities=14% Similarity=0.167 Sum_probs=62.6
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---------CCCEEEEeCccc--cc-------hhhh---------------
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---------GLPFVFASGAEF--TD-------SEKS--------------- 246 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e~---------g~~~v~is~s~~--~~-------~~~~--------------- 246 (704)
|++...-++|+||||+|||+||..+|..+ +.++++++...- .+ ..+.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 45666779999999999999999999875 567888887763 11 0000
Q ss_pred -hH---HHHHHHHHHHhh-CCCeEEEEccchhhhccCCC--CC-hhHHHHHHHHHHHhcCC
Q 005285 247 -GA---ARINEMFSIARR-NAPAFVFVDEIDAIAGRHAR--KD-PRRRATFEALIAQLDGD 299 (704)
Q Consensus 247 -g~---~~vr~lF~~Ak~-~~P~ILfIDEiDal~~~~~~--~~-~e~~~~ln~LL~~ld~~ 299 (704)
.. ..+..+....+. ..+.+|+||.+.++...... ++ .++.+.+.+++..|...
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~l 243 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRL 243 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHH
Confidence 01 112233444455 67899999999999642111 11 12233456666665543
No 120
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.70 E-value=0.00014 Score=78.47 Aligned_cols=77 Identities=22% Similarity=0.254 Sum_probs=52.2
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccccchh-----------------hhhHHHHHHHHHHHh
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSE-----------------KSGAARINEMFSIAR 259 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~~~~-----------------~~g~~~vr~lF~~Ak 259 (704)
|++...-++|+||||+|||+|+..+|..+ +.++++++........ ......+..+....+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 45556678999999999999999998764 6788888877633210 001111222222333
Q ss_pred hCCCeEEEEccchhhhc
Q 005285 260 RNAPAFVFVDEIDAIAG 276 (704)
Q Consensus 260 ~~~P~ILfIDEiDal~~ 276 (704)
...|.+++||.+.++.+
T Consensus 137 ~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp TSCCSEEEEECTTTCCC
T ss_pred hcCCCeEEehHhhhhcC
Confidence 46789999999998864
No 121
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.63 E-value=0.0011 Score=75.55 Aligned_cols=172 Identities=10% Similarity=0.075 Sum_probs=91.4
Q ss_pred cccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHH-------cCCCEEEEeCcccc
Q 005285 169 MYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKE-------SGLPFVFASGAEFT 241 (704)
Q Consensus 169 ~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e-------~g~~~v~is~s~~~ 241 (704)
....++|.++..+. +...+... ...++.|+|+||+|+|||+||+.++.. ....++.++.+...
T Consensus 122 ~~~~~vGR~~~l~~---L~~~L~~~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~ 191 (591)
T 1z6t_A 122 RPVVFVTRKKLVNA---IQQKLSKL-------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQD 191 (591)
T ss_dssp CCSSCCCCHHHHHH---HHHHHTTS-------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCC
T ss_pred CCCeecccHHHHHH---HHHHHhcc-------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCc
Confidence 34567888755444 44444432 123567899999999999999999642 11224444433221
Q ss_pred ch-----hh-----------------hhHHHHHH-HHHHHhh-CCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhc
Q 005285 242 DS-----EK-----------------SGAARINE-MFSIARR-NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLD 297 (704)
Q Consensus 242 ~~-----~~-----------------~g~~~vr~-lF~~Ak~-~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld 297 (704)
.. .. .....+.. +...... ..|++|+||+++... .+..+
T Consensus 192 ~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~----------------~l~~l- 254 (591)
T 1z6t_A 192 KSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW----------------VLKAF- 254 (591)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH----------------HHHTT-
T ss_pred hHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH----------------HHHHh-
Confidence 00 00 00011111 2222222 268999999997431 11211
Q ss_pred CCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeee---CCCCHHHHHHHHHHHhcCCCccccccHHHHHH
Q 005285 298 GDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYI---GLPDAKQRVQIFDVHSAGKQLAEDVNFEELVF 374 (704)
Q Consensus 298 ~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v---~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~ 374 (704)
. .+..||+||........ . . + ..+.+ +..+.++-.++|..+..............|++
T Consensus 255 --~-----------~~~~ilvTsR~~~~~~~-~-~-~---~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~ 315 (591)
T 1z6t_A 255 --D-----------SQCQILLTTRDKSVTDS-V-M-G---PKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIK 315 (591)
T ss_dssp --C-----------SSCEEEEEESCGGGGTT-C-C-S---CEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHH
T ss_pred --c-----------CCCeEEEECCCcHHHHh-c-C-C---CceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHH
Confidence 1 12466777765432211 1 1 1 22333 46788999999988765422222334678999
Q ss_pred hccCCCHHHHHHH
Q 005285 375 RTVGFSGADIRNL 387 (704)
Q Consensus 375 ~t~G~sgadL~~L 387 (704)
.+.|. +--|..+
T Consensus 316 ~~~G~-PLal~~~ 327 (591)
T 1z6t_A 316 ECKGS-PLVVSLI 327 (591)
T ss_dssp HHTTC-HHHHHHH
T ss_pred HhCCC-cHHHHHH
Confidence 98886 4444443
No 122
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.63 E-value=0.00023 Score=70.44 Aligned_cols=40 Identities=25% Similarity=0.255 Sum_probs=31.0
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHcC---------CCEEEEeCcc
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKESG---------LPFVFASGAE 239 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e~g---------~~~v~is~s~ 239 (704)
|++...-+.|.||+|+|||+|++.+++..- -..++++...
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 455566789999999999999999998542 2377777654
No 123
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.61 E-value=0.0001 Score=79.58 Aligned_cols=77 Identities=23% Similarity=0.335 Sum_probs=52.8
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccccchh-----hh-----------hHHHHHHHHH-HHh
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSE-----KS-----------GAARINEMFS-IAR 259 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~~~~-----~~-----------g~~~vr~lF~-~Ak 259 (704)
|++....++|+||||+|||+||..+|.++ |.++++++...-.... +. ....+..+.. .++
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 45667789999999999999999998753 7789999885432211 00 1112223333 233
Q ss_pred hCCCeEEEEccchhhhc
Q 005285 260 RNAPAFVFVDEIDAIAG 276 (704)
Q Consensus 260 ~~~P~ILfIDEiDal~~ 276 (704)
...+.+|+||.+..+..
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 56789999999999864
No 124
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.58 E-value=8.3e-05 Score=94.94 Aligned_cols=77 Identities=23% Similarity=0.334 Sum_probs=57.9
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHH---cCCCEEEEeCccccchhhh-----------------hHHHHHHHHHHHh
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEFTDSEKS-----------------GAARINEMFSIAR 259 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e---~g~~~v~is~s~~~~~~~~-----------------g~~~vr~lF~~Ak 259 (704)
|++..+.++|+||||||||+||.+++.+ .|.+.++++..+..+.... +....+......+
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~ 1156 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1156 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHH
Confidence 4667888999999999999999999764 4889999999886654211 1122334444555
Q ss_pred hCCCeEEEEccchhhhc
Q 005285 260 RNAPAFVFVDEIDAIAG 276 (704)
Q Consensus 260 ~~~P~ILfIDEiDal~~ 276 (704)
..+|++|+||++.++..
T Consensus 1157 ~~~~dlvVIDsl~~L~~ 1173 (2050)
T 3cmu_A 1157 SGAVDVIVVDSVAALTP 1173 (2050)
T ss_dssp HTCCSEEEESCGGGCCC
T ss_pred hCCCCEEEECCcccccc
Confidence 67799999999999954
No 125
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.54 E-value=0.00019 Score=76.93 Aligned_cols=99 Identities=15% Similarity=0.181 Sum_probs=60.3
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---------CCCEEEEeCccccch---------hhh---------------
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---------GLPFVFASGAEFTDS---------EKS--------------- 246 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e~---------g~~~v~is~s~~~~~---------~~~--------------- 246 (704)
|++...-++|+||||+|||+||..+|..+ +.++++++....... .+.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 45555668999999999999999999863 567888887763110 000
Q ss_pred -hH---HHHHHHHHHHhh--CCCeEEEEccchhhhccCCC--CC-hhHHHHHHHHHHHhcC
Q 005285 247 -GA---ARINEMFSIARR--NAPAFVFVDEIDAIAGRHAR--KD-PRRRATFEALIAQLDG 298 (704)
Q Consensus 247 -g~---~~vr~lF~~Ak~--~~P~ILfIDEiDal~~~~~~--~~-~e~~~~ln~LL~~ld~ 298 (704)
.. ..+..+....+. ..+.+|+||.+.++...... ++ ..+.+.+.+++..|..
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~ 258 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQK 258 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 00 112223344445 67899999999998743111 11 1223345565555544
No 126
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.50 E-value=0.00049 Score=68.74 Aligned_cols=40 Identities=40% Similarity=0.602 Sum_probs=31.4
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHH---cCCCEEEEeCcc
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAE 239 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e---~g~~~v~is~s~ 239 (704)
|++....++|+||||+|||+|+..+|.. .+.++++++...
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 4555667899999999999999988754 367788877654
No 127
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.46 E-value=0.00055 Score=68.44 Aligned_cols=40 Identities=43% Similarity=0.507 Sum_probs=31.5
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHH----cCCCEEEEeCcc
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE----SGLPFVFASGAE 239 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e----~g~~~v~is~s~ 239 (704)
|.+...-++++|+||+|||+||..+|.+ .+.++++++...
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~ 69 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccC
Confidence 4556667899999999999999887643 477888888654
No 128
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.42 E-value=8.7e-05 Score=70.79 Aligned_cols=37 Identities=22% Similarity=0.303 Sum_probs=32.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccc
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF 240 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~ 240 (704)
++.|+|+|+||+||||+++++|..++.+++.++...+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~ 39 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSL 39 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchH
Confidence 4679999999999999999999999999887765443
No 129
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.41 E-value=0.0003 Score=74.41 Aligned_cols=72 Identities=17% Similarity=0.267 Sum_probs=47.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHc-----CCCEEEEeCccccch-----hhhhHH--------HHHHH----HHH---Hhh
Q 005285 206 GVLLSGPPGTGKTLFARTLAKES-----GLPFVFASGAEFTDS-----EKSGAA--------RINEM----FSI---ARR 260 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~-----g~~~v~is~s~~~~~-----~~~g~~--------~vr~l----F~~---Ak~ 260 (704)
-++++||||+|||+|+..++.++ |..++++++.+-... .+.... ....+ .+. .+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~ 109 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIER 109 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhc
Confidence 46899999999999988876543 677889998763321 010000 11122 222 355
Q ss_pred CCCeEEEEccchhhhcc
Q 005285 261 NAPAFVFVDEIDAIAGR 277 (704)
Q Consensus 261 ~~P~ILfIDEiDal~~~ 277 (704)
..|.+|+||-|.++.++
T Consensus 110 ~~~~lvVIDSI~aL~~~ 126 (333)
T 3io5_A 110 GEKVVVFIDSLGNLASK 126 (333)
T ss_dssp TCCEEEEEECSTTCBCC
T ss_pred cCceEEEEecccccccc
Confidence 67999999999999743
No 130
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.38 E-value=0.0012 Score=73.06 Aligned_cols=100 Identities=23% Similarity=0.351 Sum_probs=69.1
Q ss_pred HHHHHHHHhhCCCeEEEEccchhhhccCC--CCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEc----CCCC
Q 005285 251 INEMFSIARRNAPAFVFVDEIDAIAGRHA--RKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT----NRPD 324 (704)
Q Consensus 251 vr~lF~~Ak~~~P~ILfIDEiDal~~~~~--~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT----N~p~ 324 (704)
.+...+.|..+ .|||+||||.++.+.. +++...+...+.||..|++...+.... .....+|++|+|. +.|.
T Consensus 241 ~~~ai~~ae~~--~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~-~~d~~~ilfI~~gaf~~~~~~ 317 (444)
T 1g41_A 241 KQKAIDAVEQN--GIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHG-MVKTDHILFIASGAFQVARPS 317 (444)
T ss_dssp HHHHHHHHHHH--CEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTE-EEECTTCEEEEEECCSSCCGG
T ss_pred HHHHHHHhccC--CeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccc-eecCCcEEEEeccccccCChh
Confidence 44555555444 4999999999975432 334444567789999999865443211 1234568999887 2344
Q ss_pred CCcccccCCCccceeeeeCCCCHHHHHHHHH
Q 005285 325 ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFD 355 (704)
Q Consensus 325 ~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~ 355 (704)
.+-|.|+. ||+.+|.++.++.++..+|+.
T Consensus 318 dlipel~~--R~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 318 DLIPELQG--RLPIRVELTALSAADFERILT 346 (444)
T ss_dssp GSCHHHHT--TCCEEEECCCCCHHHHHHHHH
T ss_pred hcchHHhc--ccceeeeCCCCCHHHHHHHHH
Confidence 44477876 999999999999999999984
No 131
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.38 E-value=0.0026 Score=64.07 Aligned_cols=34 Identities=26% Similarity=0.332 Sum_probs=27.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCc
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGA 238 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s 238 (704)
..|++.|+||+|||+++-.+|..+ |..++.+...
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D 43 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVE 43 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeC
Confidence 468999999999999999998754 7777666553
No 132
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.35 E-value=9.8e-05 Score=72.02 Aligned_cols=69 Identities=17% Similarity=0.134 Sum_probs=39.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH---cCCCEEEEeCccc--------cchhhh-----hHHHHHHHHHHHhhCCCeEEEE
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEF--------TDSEKS-----GAARINEMFSIARRNAPAFVFV 268 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e---~g~~~v~is~s~~--------~~~~~~-----g~~~vr~lF~~Ak~~~P~ILfI 268 (704)
.-++++||||+|||+++..++.. .|..++.+....- ....+. .......+++.+. ..+.+|+|
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~-~~~dvviI 82 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIE-EDTRGVFI 82 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGCC-TTEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHhc-CCCCEEEE
Confidence 35789999999999999777654 3666555432210 000000 0011223333332 24679999
Q ss_pred ccchhh
Q 005285 269 DEIDAI 274 (704)
Q Consensus 269 DEiDal 274 (704)
||++.+
T Consensus 83 DE~Q~~ 88 (184)
T 2orw_A 83 DEVQFF 88 (184)
T ss_dssp CCGGGS
T ss_pred ECcccC
Confidence 999987
No 133
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.34 E-value=0.00026 Score=74.82 Aligned_cols=100 Identities=14% Similarity=0.159 Sum_probs=60.5
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---------------C----CCEEEEeCccc--cch-------hhh-----
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---------------G----LPFVFASGAEF--TDS-------EKS----- 246 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e~---------------g----~~~v~is~s~~--~~~-------~~~----- 246 (704)
|++...-++|+||||+|||+||..+|..+ | .++++++...- .+. .+.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~ 173 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV 173 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence 45566678999999999999999998753 3 57888887763 110 000
Q ss_pred -----------hH---HHHHHHHHHHhh-CCCeEEEEccchhhhccCCC--CC-hhHHHHHHHHHHHhcCC
Q 005285 247 -----------GA---ARINEMFSIARR-NAPAFVFVDEIDAIAGRHAR--KD-PRRRATFEALIAQLDGD 299 (704)
Q Consensus 247 -----------g~---~~vr~lF~~Ak~-~~P~ILfIDEiDal~~~~~~--~~-~e~~~~ln~LL~~ld~~ 299 (704)
.. ..+..+....+. ..+.+|+||.+..+...... ++ .++.+.+.+++..|...
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~l 244 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKL 244 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHH
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHH
Confidence 00 012223334444 56899999999999642111 11 12333456666655543
No 134
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.33 E-value=0.0024 Score=78.46 Aligned_cols=173 Identities=9% Similarity=0.018 Sum_probs=96.4
Q ss_pred cccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc-------CCCEEEEeCcccc
Q 005285 169 MYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-------GLPFVFASGAEFT 241 (704)
Q Consensus 169 ~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~-------g~~~v~is~s~~~ 241 (704)
.-..++|.++..+.|.+ .|... ...++-|.|+|++|+|||+||+.++... ...++.++.+...
T Consensus 122 ~~~~~vgR~~~~~~l~~---~l~~~-------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~ 191 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQ---KLWKL-------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQD 191 (1249)
T ss_dssp CCSSCCCCHHHHHHHHH---HHHTT-------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCC
T ss_pred CCceeccHHHHHHHHHH---HHhhc-------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcC
Confidence 34567888755544444 44322 1235678999999999999999997652 1234455544421
Q ss_pred ch--h--------------------hhhHHHHHHHHHHHhh--CCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhc
Q 005285 242 DS--E--------------------KSGAARINEMFSIARR--NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLD 297 (704)
Q Consensus 242 ~~--~--------------------~~g~~~vr~lF~~Ak~--~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld 297 (704)
.. . ......+...+..... ..+.+|+||+++... .+.
T Consensus 192 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~-------------------~~~ 252 (1249)
T 3sfz_A 192 KSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW-------------------VLK 252 (1249)
T ss_dssp HHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH-------------------HHT
T ss_pred chHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH-------------------HHH
Confidence 10 0 0011112222222222 337899999998431 122
Q ss_pred CCcccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCC-CCHHHHHHHHHHHhcCCCccccccHHHHHHhc
Q 005285 298 GDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGL-PDAKQRVQIFDVHSAGKQLAEDVNFEELVFRT 376 (704)
Q Consensus 298 ~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~-Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t 376 (704)
.+. .+..||.||..+...... . .....+.++. .+.++-.++|..+.....-.......+|++..
T Consensus 253 ~~~-----------~~~~ilvTtR~~~~~~~~-~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~ 317 (1249)
T 3sfz_A 253 AFD-----------NQCQILLTTRDKSVTDSV-M---GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKEC 317 (1249)
T ss_dssp TTC-----------SSCEEEEEESSTTTTTTC-C---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHT
T ss_pred hhc-----------CCCEEEEEcCCHHHHHhh-c---CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHh
Confidence 221 124677788765443211 1 1234677775 88888899998776443322223467888888
Q ss_pred cCCCHHHHHH
Q 005285 377 VGFSGADIRN 386 (704)
Q Consensus 377 ~G~sgadL~~ 386 (704)
.|+ +-.|+.
T Consensus 318 ~gl-PLal~~ 326 (1249)
T 3sfz_A 318 KGS-PLVVSL 326 (1249)
T ss_dssp TTC-HHHHHH
T ss_pred CCC-HHHHHH
Confidence 886 433443
No 135
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.33 E-value=0.00053 Score=73.62 Aligned_cols=40 Identities=25% Similarity=0.267 Sum_probs=32.2
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---------CCCEEEEeCcc
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---------GLPFVFASGAE 239 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e~---------g~~~v~is~s~ 239 (704)
|++...-+.|+||||+|||+|++.++... +-.+++++..+
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 45666778999999999999999999876 23567888765
No 136
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.32 E-value=0.0006 Score=74.62 Aligned_cols=77 Identities=17% Similarity=0.107 Sum_probs=50.0
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---------CCCEEEEeCccccch---------hhh---------------
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---------GLPFVFASGAEFTDS---------EKS--------------- 246 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e~---------g~~~v~is~s~~~~~---------~~~--------------- 246 (704)
|+....-++|+||||+|||+|++.+|... +...++++..+.... .+.
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 56666778999999999999999776433 344888887663111 000
Q ss_pred -h---HHHHHHHHHHHhhCCCeEEEEccchhhhc
Q 005285 247 -G---AARINEMFSIARRNAPAFVFVDEIDAIAG 276 (704)
Q Consensus 247 -g---~~~vr~lF~~Ak~~~P~ILfIDEiDal~~ 276 (704)
. ...+..+...+....|.+|+||++-++..
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~ 287 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYR 287 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCc
Confidence 0 01122223334456799999999998864
No 137
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.31 E-value=0.00036 Score=77.58 Aligned_cols=63 Identities=16% Similarity=0.299 Sum_probs=43.1
Q ss_pred ccCCCccccceecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHc---CC-CEEEEeC
Q 005285 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GL-PFVFASG 237 (704)
Q Consensus 163 ~~~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~-~~v~is~ 237 (704)
++..+.+|+++ .++.++.+..+..++... ...++|.|+||||||+++.+++..+ +. .++.+..
T Consensus 16 ~~~~p~~~~~L--n~~Q~~av~~~~~~i~~~----------~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~ 82 (459)
T 3upu_A 16 PRGSHMTFDDL--TEGQKNAFNIVMKAIKEK----------KHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAP 82 (459)
T ss_dssp -----CCSSCC--CHHHHHHHHHHHHHHHSS----------SCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred cccCCCccccC--CHHHHHHHHHHHHHHhcC----------CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecC
Confidence 35677888886 556677777777776654 1379999999999999999998765 44 4554443
No 138
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.29 E-value=0.00039 Score=87.90 Aligned_cols=77 Identities=21% Similarity=0.291 Sum_probs=55.7
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccccchh-----hh--------hHHHHHHHHHHHh----
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSE-----KS--------GAARINEMFSIAR---- 259 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~~~~-----~~--------g~~~vr~lF~~Ak---- 259 (704)
|+.+...++|+||||+|||+||..+|.++ |.++++++..+..... +. ....+..++..++
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~ 807 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHH
Confidence 56778889999999999999999998764 5689999887654321 10 0112334444443
Q ss_pred hCCCeEEEEccchhhhc
Q 005285 260 RNAPAFVFVDEIDAIAG 276 (704)
Q Consensus 260 ~~~P~ILfIDEiDal~~ 276 (704)
...|.+|+||.+..+..
T Consensus 808 ~~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 808 SGAVDVIVVDSVAALTP 824 (1706)
T ss_dssp HTCCSEEEESCSTTCCC
T ss_pred ccCCCEEEEechhhhcc
Confidence 57899999999999973
No 139
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.28 E-value=0.00018 Score=69.10 Aligned_cols=32 Identities=28% Similarity=0.282 Sum_probs=29.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCEEEE
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~i 235 (704)
++.|+|.||||+|||++++.+|..+|.+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 56799999999999999999999999998743
No 140
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.25 E-value=0.00078 Score=69.52 Aligned_cols=40 Identities=25% Similarity=0.351 Sum_probs=30.5
Q ss_pred CccCceEEEEcCCCChHHHHHHHHHHHc--C-----------CCEEEEeCccc
Q 005285 201 VQFVRGVLLSGPPGTGKTLFARTLAKES--G-----------LPFVFASGAEF 240 (704)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAraiA~e~--g-----------~~~v~is~s~~ 240 (704)
++...-++|+||||+|||+|++.+|..+ | .++++++..+.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~ 79 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP 79 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCC
Confidence 4455678999999999999999998643 2 46777776653
No 141
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.25 E-value=0.00022 Score=68.70 Aligned_cols=34 Identities=32% Similarity=0.511 Sum_probs=29.9
Q ss_pred CccCceEEEEcCCCChHHHHHHHHHHHcCCCEEE
Q 005285 201 VQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (704)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~ 234 (704)
...|.-|+|.|+||+||||+++.++..+|.+++.
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 3456789999999999999999999999988765
No 142
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.25 E-value=0.00053 Score=69.93 Aligned_cols=58 Identities=24% Similarity=0.269 Sum_probs=41.6
Q ss_pred cHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccc
Q 005285 179 VWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF 240 (704)
Q Consensus 179 ~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~ 240 (704)
.+..++.++..+.... .....|..++|.||||+||||+++.++..++.+++.+++..+
T Consensus 11 ~~~~~~~~~~~~~~~~----~~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 11 FKHALARNLRSLTRGK----KSSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp HHHHHHHHHHHHHTTC----CCCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred HHHHHHHHHHHHHccC----CcccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 3444555544433321 134567789999999999999999999999877777777665
No 143
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.15 E-value=0.0003 Score=68.86 Aligned_cols=33 Identities=27% Similarity=0.530 Sum_probs=29.3
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCEEEE
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~i 235 (704)
..+.|+|.||||+||||+++++|+.+|.+++..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 456799999999999999999999999998743
No 144
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.09 E-value=0.001 Score=73.83 Aligned_cols=40 Identities=25% Similarity=0.303 Sum_probs=32.4
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHH----cCCCEEEEeCcc
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE----SGLPFVFASGAE 239 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e----~g~~~v~is~s~ 239 (704)
|..+..-++|.|+||+|||+|+..+|.. .|.++++++...
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~ 242 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM 242 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 5666677899999999999999999764 367888888653
No 145
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.06 E-value=0.00033 Score=73.11 Aligned_cols=41 Identities=27% Similarity=0.440 Sum_probs=33.0
Q ss_pred CccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCcccc
Q 005285 201 VQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (704)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~ 241 (704)
...|..++|.||||+||||+++.++.+++..++++++..+.
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R 70 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFK 70 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhH
Confidence 34577899999999999999999999886566777764443
No 146
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.06 E-value=0.0083 Score=68.04 Aligned_cols=164 Identities=12% Similarity=0.054 Sum_probs=87.8
Q ss_pred ecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHH----HcCCC---EEEEeCcccc-----
Q 005285 174 VLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAK----ESGLP---FVFASGAEFT----- 241 (704)
Q Consensus 174 vG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~----e~g~~---~v~is~s~~~----- 241 (704)
+|.++.++.|.+.+.. . +...++.|.|+|++|+|||+||+.+++ ...-. .+.++.+...
T Consensus 131 ~GR~~~~~~l~~~L~~---~------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~ 201 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDE---M------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTF 201 (549)
T ss_dssp CCCHHHHHHHHHHHHH---H------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHH
T ss_pred CCchHHHHHHHHHHhc---c------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHH
Confidence 3777555554444322 1 112357789999999999999999997 22222 2333433321
Q ss_pred c-------hhhh-------------hHHHHHHHHHHHhhC-CCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCc
Q 005285 242 D-------SEKS-------------GAARINEMFSIARRN-APAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDK 300 (704)
Q Consensus 242 ~-------~~~~-------------g~~~vr~lF~~Ak~~-~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~ 300 (704)
. ..+. ....+...+...-.. .+++|+||+++... +. .+...
T Consensus 202 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~-----------~~---~~~~~---- 263 (549)
T 2a5y_B 202 DLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE-----------TI---RWAQE---- 263 (549)
T ss_dssp HHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH-----------HH---HHHHH----
T ss_pred HHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch-----------hh---ccccc----
Confidence 0 0000 001122233333334 37999999998541 11 11111
Q ss_pred ccCCccccccCccEEEEEEcCCCCCCcccccCCCccceeeeeCCCCHHHHHHHHHHHhcCCCcccc--ccHHHHHHhccC
Q 005285 301 ERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAED--VNFEELVFRTVG 378 (704)
Q Consensus 301 ~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~d--vdl~~La~~t~G 378 (704)
. +..||.||....... .. +..+..+.++..+.++-.++|..+........+ ....+|++...|
T Consensus 264 --~---------gs~ilvTTR~~~v~~-~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~G 328 (549)
T 2a5y_B 264 --L---------RLRCLVTTRDVEISN-AA---SQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSG 328 (549)
T ss_dssp --T---------TCEEEEEESBGGGGG-GC---CSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTT
T ss_pred --C---------CCEEEEEcCCHHHHH-Hc---CCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCC
Confidence 1 136777776533221 11 113356889999999999999987543322111 124567777777
Q ss_pred C
Q 005285 379 F 379 (704)
Q Consensus 379 ~ 379 (704)
.
T Consensus 329 l 329 (549)
T 2a5y_B 329 N 329 (549)
T ss_dssp C
T ss_pred C
Confidence 5
No 147
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.03 E-value=0.00034 Score=67.42 Aligned_cols=40 Identities=35% Similarity=0.447 Sum_probs=33.1
Q ss_pred CccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccc
Q 005285 201 VQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF 240 (704)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~ 240 (704)
+..+..+.|.||||+||||+++.+++..+.+.+.+++.++
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 4456678999999999999999999988778777776543
No 148
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.99 E-value=0.00045 Score=66.33 Aligned_cols=30 Identities=37% Similarity=0.584 Sum_probs=27.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCCCEEE
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e~g~~~v~ 234 (704)
..|+|.|+||+|||++|+.+|..+|.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLD 32 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 348999999999999999999999999864
No 149
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.99 E-value=0.00046 Score=64.98 Aligned_cols=31 Identities=32% Similarity=0.396 Sum_probs=27.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCEEEEe
Q 005285 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~g~~~v~is 236 (704)
-|+|.||||+||||+++.+++.+|.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5889999999999999999999998886443
No 150
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.95 E-value=0.00045 Score=65.92 Aligned_cols=29 Identities=38% Similarity=0.581 Sum_probs=26.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCEEE
Q 005285 206 GVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~g~~~v~ 234 (704)
.++|.||||+|||++++++|..+|.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 58999999999999999999999988764
No 151
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.95 E-value=0.00046 Score=65.34 Aligned_cols=30 Identities=37% Similarity=0.698 Sum_probs=26.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCEE
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFV 233 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g~~~v 233 (704)
+..+.|.||||+||||+++.+|+.++.+++
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 356999999999999999999999997655
No 152
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.95 E-value=0.00053 Score=65.65 Aligned_cols=33 Identities=39% Similarity=0.788 Sum_probs=28.8
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCEEEE
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~i 235 (704)
.++.|+|+|+||+|||++++++|..+|.+++..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 356799999999999999999999999887643
No 153
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.94 E-value=0.0015 Score=65.66 Aligned_cols=69 Identities=12% Similarity=0.133 Sum_probs=44.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCcc-------ccchhhhh-----HHHHHHHHHHHhh----CCCeEE
Q 005285 206 GVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAE-------FTDSEKSG-----AARINEMFSIARR----NAPAFV 266 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~-------~~~~~~~g-----~~~vr~lF~~Ak~----~~P~IL 266 (704)
-++++||||+|||+++..++..+ |..++.++... +.+..+.. ......+++.++. ..+.+|
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvV 93 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKVI 93 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCEE
Confidence 45778999999999999887654 66777665332 11111110 0112356666554 347899
Q ss_pred EEccchhh
Q 005285 267 FVDEIDAI 274 (704)
Q Consensus 267 fIDEiDal 274 (704)
+|||+..+
T Consensus 94 iIDEaQ~l 101 (223)
T 2b8t_A 94 GIDEVQFF 101 (223)
T ss_dssp EECSGGGS
T ss_pred EEecCccC
Confidence 99999876
No 154
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.92 E-value=0.00072 Score=65.98 Aligned_cols=34 Identities=41% Similarity=0.560 Sum_probs=29.5
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEE
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~i 235 (704)
..|..|+|.|+||+||||+|+.+|..+|.+++.+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 3466799999999999999999999999887644
No 155
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.91 E-value=0.0076 Score=68.51 Aligned_cols=74 Identities=18% Similarity=0.205 Sum_probs=51.6
Q ss_pred eEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCC--CCcccccCCCccceeee
Q 005285 264 AFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPD--ELDLEFVRPGRIDRRLY 341 (704)
Q Consensus 264 ~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~--~LD~aLlRpgRfd~~I~ 341 (704)
.+|+|||++.+.... ..+....+..+...- . .-+|.+|++|.+|. .|+..++. -|...|.
T Consensus 345 ivvVIDE~~~L~~~~---~~~~~~~L~~Iar~G----R---------a~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~ 406 (574)
T 2iut_A 345 IVVVVDEFADMMMIV---GKKVEELIARIAQKA----R---------AAGIHLILATQRPSVDVITGLIKA--NIPTRIA 406 (574)
T ss_dssp EEEEESCCTTHHHHT---CHHHHHHHHHHHHHC----T---------TTTEEEEEEESCCCTTTSCHHHHH--TCCEEEE
T ss_pred EEEEEeCHHHHhhhh---hHHHHHHHHHHHHHH----h---------hCCeEEEEEecCcccccccHHHHh--hhccEEE
Confidence 589999999886421 122333334443321 1 23589999999987 78877776 7888889
Q ss_pred eCCCCHHHHHHHHH
Q 005285 342 IGLPDAKQRVQIFD 355 (704)
Q Consensus 342 v~~Pd~~eR~~Il~ 355 (704)
+...+..+...||.
T Consensus 407 lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 407 FQVSSKIDSRTILD 420 (574)
T ss_dssp ECCSCHHHHHHHHS
T ss_pred EEcCCHHHHHHhcC
Confidence 99999888888864
No 156
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.90 E-value=0.00042 Score=66.94 Aligned_cols=32 Identities=38% Similarity=0.577 Sum_probs=27.7
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHH-cCCCEEE
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKE-SGLPFVF 234 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e-~g~~~v~ 234 (704)
.+..|+|+|+||+|||++++.+|.. +|.+++.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 3457999999999999999999999 7877764
No 157
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.89 E-value=0.0006 Score=65.45 Aligned_cols=31 Identities=23% Similarity=0.336 Sum_probs=27.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCEEE
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~ 234 (704)
|.-|+|.|+||+||||+|+.++..+|.+++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 5679999999999999999999999987653
No 158
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.87 E-value=0.0023 Score=70.87 Aligned_cols=40 Identities=25% Similarity=0.222 Sum_probs=32.5
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHH----cCCCEEEEeCcc
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE----SGLPFVFASGAE 239 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e----~g~~~v~is~s~ 239 (704)
|..+..-++|.|+||+|||+||..+|.. .|.++++++...
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~ 239 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEM 239 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 5666677899999999999999999764 367888888753
No 159
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.87 E-value=0.00048 Score=65.38 Aligned_cols=30 Identities=30% Similarity=0.533 Sum_probs=24.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHH-HcCCCEE
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAK-ESGLPFV 233 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~-e~g~~~v 233 (704)
|.-|+|.|+||+||||+|+.++. ..|.+++
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 56789999999999999999998 4554433
No 160
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.87 E-value=0.00074 Score=64.68 Aligned_cols=33 Identities=24% Similarity=0.343 Sum_probs=28.6
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCEEEE
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~i 235 (704)
.++-|+|.|+||+|||++++.++..+|.+++..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 466799999999999999999999999776543
No 161
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.86 E-value=0.00072 Score=63.90 Aligned_cols=30 Identities=27% Similarity=0.329 Sum_probs=27.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCCCEEE
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e~g~~~v~ 234 (704)
..|+|.|+||+|||++++.+|..+|.+++.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id 37 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLD 37 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 479999999999999999999999999874
No 162
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.84 E-value=0.0019 Score=66.04 Aligned_cols=38 Identities=26% Similarity=0.519 Sum_probs=31.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH---cCCCEEEEeCcccc
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEFT 241 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e---~g~~~v~is~s~~~ 241 (704)
+.-|+|.|+||+|||++|+.++.. .|.+++.++...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 456899999999999999999987 78998877665543
No 163
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.81 E-value=0.00083 Score=65.58 Aligned_cols=31 Identities=26% Similarity=0.580 Sum_probs=27.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCEEE
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~ 234 (704)
++-|+|.|+||+||||+++.+++.+|.+++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 5679999999999999999999999887764
No 164
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.80 E-value=0.00069 Score=69.27 Aligned_cols=32 Identities=38% Similarity=0.490 Sum_probs=28.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCEEEEeC
Q 005285 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFASG 237 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~ 237 (704)
-++|.||||+|||++|+++|+.++.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 57899999999999999999999998876654
No 165
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.80 E-value=0.0032 Score=66.39 Aligned_cols=40 Identities=30% Similarity=0.221 Sum_probs=32.2
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCcc
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAE 239 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~ 239 (704)
|..+..-++|.|+||+|||+||..+|..+ |.++++++...
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~ 106 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM 106 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCC
Confidence 55666679999999999999999998653 56888888653
No 166
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.80 E-value=0.004 Score=64.61 Aligned_cols=39 Identities=23% Similarity=0.253 Sum_probs=30.3
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc----CCCEEEEeCc
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES----GLPFVFASGA 238 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e~----g~~~v~is~s 238 (704)
|+....-++|.||||+|||+|++.+|... |.++++++..
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE 73 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence 44556678999999999999999998754 5567766643
No 167
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.80 E-value=0.00077 Score=66.87 Aligned_cols=32 Identities=31% Similarity=0.521 Sum_probs=28.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCEEEE
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~i 235 (704)
+..|+|.|+||+||||+++.+|..+|.+++..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 45689999999999999999999999877644
No 168
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.80 E-value=0.00071 Score=67.83 Aligned_cols=39 Identities=18% Similarity=0.352 Sum_probs=31.7
Q ss_pred CccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCcccc
Q 005285 201 VQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (704)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~ 241 (704)
.+.|+-|+|.||||+||+|.|+.||..+|++.+ +..++.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI--stGdll 64 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL--SSGDLL 64 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEE--CHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCceE--cHHHHH
Confidence 356788999999999999999999999987754 444443
No 169
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.79 E-value=0.00062 Score=64.99 Aligned_cols=30 Identities=37% Similarity=0.422 Sum_probs=23.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCEE
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFV 233 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g~~~v 233 (704)
|.-|+|.|+||+||||+|+.++..++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 467899999999999999999999999987
No 170
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.79 E-value=0.00083 Score=66.59 Aligned_cols=32 Identities=28% Similarity=0.343 Sum_probs=28.1
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCEEE
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~ 234 (704)
.+..|+|.|+||+||||+++.+|..++.+++.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 34 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLA 34 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 35679999999999999999999999987654
No 171
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.78 E-value=0.00087 Score=64.62 Aligned_cols=33 Identities=18% Similarity=0.353 Sum_probs=28.5
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCEEEE
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~i 235 (704)
.+.-|+|.|+||+||||+++.+|..+|.+++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 346799999999999999999999999886643
No 172
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.76 E-value=0.00083 Score=66.98 Aligned_cols=34 Identities=18% Similarity=0.325 Sum_probs=28.3
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCCCEEEE
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~i 235 (704)
..+.-|+|.|+||+||||+++.+|..+|.+++..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 3456799999999999999999999999876643
No 173
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.76 E-value=0.00074 Score=64.72 Aligned_cols=30 Identities=40% Similarity=0.628 Sum_probs=26.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCEE
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFV 233 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g~~~v 233 (704)
+..|+|.|+||+||||+++.+|..+|.+++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 346899999999999999999999997765
No 174
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.73 E-value=0.0024 Score=64.45 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=28.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCc
Q 005285 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFASGA 238 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s 238 (704)
.++++||+|+|||.++.+++...+.+++.+...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 489999999999999999999888887777655
No 175
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.72 E-value=0.00087 Score=62.77 Aligned_cols=29 Identities=41% Similarity=0.750 Sum_probs=25.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCEEEE
Q 005285 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~g~~~v~i 235 (704)
-|+|.||||+||||+|+.+ ..+|.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5889999999999999999 8889887653
No 176
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.72 E-value=0.0085 Score=67.40 Aligned_cols=75 Identities=24% Similarity=0.313 Sum_probs=49.9
Q ss_pred Ce-EEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCCC--CCcccccCCCcccee
Q 005285 263 PA-FVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPD--ELDLEFVRPGRIDRR 339 (704)
Q Consensus 263 P~-ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~--~LD~aLlRpgRfd~~ 339 (704)
|. +|+|||+..+.... ...+..++..+-.... .-++.+|.+|.+|. .++..++. .|...
T Consensus 297 P~ivlvIDE~~~ll~~~-------~~~~~~~l~~Lar~gR---------a~GI~LIlaTQrp~~dvl~~~i~~--n~~~R 358 (512)
T 2ius_A 297 PYIVVLVDEFADLMMTV-------GKKVEELIARLAQKAR---------AAGIHLVLATQRPSVDVITGLIKA--NIPTR 358 (512)
T ss_dssp CEEEEEEETHHHHHHHH-------HHHHHHHHHHHHHHCG---------GGTEEEEEEESCCCTTTSCHHHHH--HCCEE
T ss_pred CcEEEEEeCHHHHHhhh-------hHHHHHHHHHHHHHhh---------hCCcEEEEEecCCccccccHHHHh--hcCCe
Confidence 54 89999998876320 1122333333322111 12488899999987 67777766 78888
Q ss_pred eeeCCCCHHHHHHHHH
Q 005285 340 LYIGLPDAKQRVQIFD 355 (704)
Q Consensus 340 I~v~~Pd~~eR~~Il~ 355 (704)
|.+...+..+...|+.
T Consensus 359 I~lrv~s~~dsr~ilg 374 (512)
T 2ius_A 359 IAFTVSSKIDSRTILD 374 (512)
T ss_dssp EEECCSSHHHHHHHHS
T ss_pred EEEEcCCHHHHHHhcC
Confidence 8999999999888874
No 177
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.72 E-value=0.00095 Score=63.04 Aligned_cols=30 Identities=33% Similarity=0.538 Sum_probs=27.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCCCEEE
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e~g~~~v~ 234 (704)
+.|+|.|+||+|||++++.+|..+|.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 358999999999999999999999988764
No 178
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.72 E-value=0.00083 Score=64.91 Aligned_cols=32 Identities=22% Similarity=0.415 Sum_probs=27.9
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCEEE
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~ 234 (704)
.+.-|+|.|+||+||||+|+.+|..+|.+++.
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 42 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLS 42 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 45679999999999999999999999976653
No 179
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.66 E-value=0.0015 Score=62.38 Aligned_cols=36 Identities=31% Similarity=0.374 Sum_probs=31.2
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGA 238 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s 238 (704)
.+..+.|.|++|+||||+++.++..+ |.+++.+++.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~ 42 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 42 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECCh
Confidence 45668899999999999999999987 9999888743
No 180
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.66 E-value=0.0011 Score=65.20 Aligned_cols=30 Identities=27% Similarity=0.583 Sum_probs=26.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCEEEE
Q 005285 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~g~~~v~i 235 (704)
.|+|.||||+||||+|+.+|.++|.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 388999999999999999999999887644
No 181
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.66 E-value=0.00094 Score=63.96 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=23.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcC
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESG 229 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g 229 (704)
+.-|+|.|+||+||||+++.++..++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35689999999999999999999887
No 182
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.64 E-value=0.0012 Score=66.93 Aligned_cols=33 Identities=21% Similarity=0.213 Sum_probs=28.9
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCEEEE
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~i 235 (704)
.|.-|+|.||||+||||+|+.++..+|.+++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 567899999999999999999999998776643
No 183
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.63 E-value=0.0013 Score=64.07 Aligned_cols=33 Identities=27% Similarity=0.382 Sum_probs=28.5
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCEEEE
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~i 235 (704)
.++-|+|.|+||+||||+++.++..+|.+++..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 456789999999999999999999999876643
No 184
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.63 E-value=0.0013 Score=66.03 Aligned_cols=31 Identities=35% Similarity=0.396 Sum_probs=27.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCEEE
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~ 234 (704)
+..|+|.|+||+||||+|+.+|..++.+++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 46 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLA 46 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 4579999999999999999999999987654
No 185
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.62 E-value=0.0013 Score=64.84 Aligned_cols=30 Identities=27% Similarity=0.529 Sum_probs=26.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCEEEE
Q 005285 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~g~~~v~i 235 (704)
.|+|.||||+||||+|+.+|..+|.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 378999999999999999999999887644
No 186
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.60 E-value=0.0014 Score=62.20 Aligned_cols=30 Identities=27% Similarity=0.378 Sum_probs=26.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCEE
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFV 233 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g~~~v 233 (704)
...++|.||||+||||+++.+++.+|.+++
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i 37 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFL 37 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEE
Confidence 456899999999999999999999886654
No 187
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.59 E-value=0.0014 Score=61.62 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=26.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCEEE
Q 005285 206 GVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~g~~~v~ 234 (704)
.|+|.|+||+|||++++.++..+|.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 48899999999999999999999988774
No 188
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.57 E-value=0.001 Score=65.97 Aligned_cols=31 Identities=23% Similarity=0.330 Sum_probs=27.4
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCEE
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFV 233 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v 233 (704)
.|..|+|.||||+||||+++.+|..++.+++
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i 34 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHI 34 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 4567999999999999999999999997654
No 189
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.57 E-value=0.0015 Score=63.85 Aligned_cols=36 Identities=39% Similarity=0.618 Sum_probs=29.0
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF 240 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~ 240 (704)
.+.-+.|.||+|+||||+++.+++.+|..++ ++.++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i--~~d~~ 63 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFA--EADAF 63 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEEE--EGGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeEE--ccccc
Confidence 4567899999999999999999999876544 44444
No 190
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.54 E-value=0.00076 Score=66.06 Aligned_cols=23 Identities=39% Similarity=0.694 Sum_probs=20.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHc
Q 005285 206 GVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
-+.|.||+|+||||+++.+++.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999865
No 191
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.53 E-value=0.022 Score=62.84 Aligned_cols=70 Identities=20% Similarity=0.212 Sum_probs=49.8
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccccch---------------------hhhhHHHHHHHHHHH
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDS---------------------EKSGAARINEMFSIA 258 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~~~---------------------~~~g~~~vr~lF~~A 258 (704)
.|.-+++.|++|+||||++..+|..+ |..+..+++..+... .......++..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 47889999999999999999998754 677777776543211 011223345667778
Q ss_pred hhCCCeEEEEccch
Q 005285 259 RRNAPAFVFVDEID 272 (704)
Q Consensus 259 k~~~P~ILfIDEiD 272 (704)
+...+.+++||..-
T Consensus 179 ~~~~~DvVIIDTaG 192 (443)
T 3dm5_A 179 KSKGVDIIIVDTAG 192 (443)
T ss_dssp HHTTCSEEEEECCC
T ss_pred HhCCCCEEEEECCC
Confidence 77778899999873
No 192
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.48 E-value=0.0016 Score=69.12 Aligned_cols=38 Identities=26% Similarity=0.349 Sum_probs=32.4
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF 240 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~ 240 (704)
.++.++|.||+|+|||++++.+|+.++.+++.++...+
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qv 41 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALPCELISVDSALI 41 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhh
Confidence 35679999999999999999999999988887765543
No 193
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.46 E-value=0.012 Score=57.84 Aligned_cols=100 Identities=16% Similarity=0.146 Sum_probs=59.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHH---cCCCEEEEeCcc---------ccchhh------------------hhHHHHHHHH
Q 005285 206 GVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAE---------FTDSEK------------------SGAARINEMF 255 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e---~g~~~v~is~s~---------~~~~~~------------------~g~~~vr~lF 255 (704)
.|++|+++|.|||++|-++|-. .|..+..+.... +..... ......+..+
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l 109 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVW 109 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHH
Confidence 5889999999999999999764 488888774322 111110 0122344555
Q ss_pred HHHhh----CCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEEcCCC
Q 005285 256 SIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRP 323 (704)
Q Consensus 256 ~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p 323 (704)
..+++ ....+|+|||+-....-+-- ....++..+..... ..-||.|+|.+
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~al~~g~l-------~~~ev~~~l~~Rp~-----------~~~vIlTGr~a 163 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYMVAYDYL-------PLEEVISALNARPG-----------HQTVIITGRGC 163 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHHHHTTSS-------CHHHHHHHHHTSCT-----------TCEEEEECSSC
T ss_pred HHHHHHHhcCCCCEEEEeCCCccccCCCC-------CHHHHHHHHHhCcC-----------CCEEEEECCCC
Confidence 55544 44789999999664321100 12345555544332 25678888764
No 194
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.44 E-value=0.0017 Score=64.44 Aligned_cols=34 Identities=38% Similarity=0.636 Sum_probs=28.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCcccc
Q 005285 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~ 241 (704)
.++|.||||+||+|.|+.||+.+|++.+ |..++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~i--stGdll 35 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHI--STGDIL 35 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEE--cHHHHH
Confidence 3788999999999999999999988765 445544
No 195
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.38 E-value=0.021 Score=64.47 Aligned_cols=96 Identities=18% Similarity=0.163 Sum_probs=60.5
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccccch-----------------------------hhhh
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDS-----------------------------EKSG 247 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~~~-----------------------------~~~g 247 (704)
++.....++|.||||+|||+|++.++... |-++++++..+-... ...+
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 45555668999999999999999998753 556666665432100 0022
Q ss_pred HHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhc
Q 005285 248 AARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLD 297 (704)
Q Consensus 248 ~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld 297 (704)
....+.+...+....|.+|+||=+..+-.. . .+.+....+..++..+.
T Consensus 357 g~~q~~~~a~~l~~~p~llilDp~~~Ld~~-~-~~~~~~~~i~~ll~~l~ 404 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAIDSLSALARG-V-SNNAFRQFVIGVTGYAK 404 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECHHHHTSS-S-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCEEEEcChHHHHhh-C-ChHHHHHHHHHHHHHHH
Confidence 344566677777788999999966666322 1 11223445555666554
No 196
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.37 E-value=0.0021 Score=63.34 Aligned_cols=30 Identities=27% Similarity=0.479 Sum_probs=26.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCEEEE
Q 005285 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~g~~~v~i 235 (704)
.|+|.|+||+||||+++.+|..+|.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 388999999999999999999999887654
No 197
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.37 E-value=0.0026 Score=60.92 Aligned_cols=31 Identities=26% Similarity=0.264 Sum_probs=27.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHc---CCCEEEEe
Q 005285 206 GVLLSGPPGTGKTLFARTLAKES---GLPFVFAS 236 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is 236 (704)
-|.|.|+||+||||+++.++..+ |.+++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 47899999999999999999987 99988765
No 198
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.35 E-value=0.012 Score=61.95 Aligned_cols=72 Identities=25% Similarity=0.231 Sum_probs=45.9
Q ss_pred CccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccccchh-------h--------------hhHHHHHHHHH
Q 005285 201 VQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSE-------K--------------SGAARINEMFS 256 (704)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~~~~-------~--------------~g~~~vr~lF~ 256 (704)
...++-+++.||+|+||||++..+|..+ |..+..+++..+.... . .........+.
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 3457788999999999999999998754 5566655543322110 0 00011223445
Q ss_pred HHhhCCCeEEEEccch
Q 005285 257 IARRNAPAFVFVDEID 272 (704)
Q Consensus 257 ~Ak~~~P~ILfIDEiD 272 (704)
.+....|.+|+||+.-
T Consensus 181 ~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 181 HALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHTTCSEEEEEECC
T ss_pred HHHhcCCCEEEEECCC
Confidence 5566778899999874
No 199
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.34 E-value=0.0043 Score=66.77 Aligned_cols=67 Identities=22% Similarity=0.339 Sum_probs=43.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHc----CCCEEEEeC-cccc--------ch--hhhhHHHHHHHHHHHhhCCCeEEEEcc
Q 005285 206 GVLLSGPPGTGKTLFARTLAKES----GLPFVFASG-AEFT--------DS--EKSGAARINEMFSIARRNAPAFVFVDE 270 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~----g~~~v~is~-s~~~--------~~--~~~g~~~vr~lF~~Ak~~~P~ILfIDE 270 (704)
.+++.||+|+||||+.+++++.. +..++.+.- .++. .. .+.....+...+..|-...|.||++||
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillDE 204 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGE 204 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEESC
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecCC
Confidence 57899999999999999998864 333333221 1111 00 111112345577777788999999999
Q ss_pred ch
Q 005285 271 ID 272 (704)
Q Consensus 271 iD 272 (704)
+-
T Consensus 205 p~ 206 (356)
T 3jvv_A 205 MR 206 (356)
T ss_dssp CC
T ss_pred CC
Confidence 84
No 200
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.33 E-value=0.0024 Score=63.14 Aligned_cols=30 Identities=20% Similarity=0.460 Sum_probs=26.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCEE
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFV 233 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g~~~v 233 (704)
+..|.|.||+|+||||+++.+++.+|++++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 346899999999999999999999998765
No 201
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.32 E-value=0.0023 Score=73.24 Aligned_cols=33 Identities=36% Similarity=0.537 Sum_probs=26.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH---cCCCEEEEeC
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASG 237 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e---~g~~~v~is~ 237 (704)
+.+++.||||||||+++++++.. .|.+++.+..
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap 240 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP 240 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecC
Confidence 57899999999999999999764 4677766543
No 202
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.30 E-value=0.0026 Score=61.65 Aligned_cols=33 Identities=12% Similarity=0.143 Sum_probs=29.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc-CCCEEEEe
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKES-GLPFVFAS 236 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~-g~~~v~is 236 (704)
+.-|.|.|+||+||||+++.++..+ |.+++.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 4568999999999999999999998 68887765
No 203
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.29 E-value=0.0032 Score=64.73 Aligned_cols=69 Identities=17% Similarity=0.334 Sum_probs=43.0
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcC----CCEEEEeCccc----------cch--hhhhHHHHHHHHHHHhhCCCeEE
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESG----LPFVFASGAEF----------TDS--EKSGAARINEMFSIARRNAPAFV 266 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g----~~~v~is~s~~----------~~~--~~~g~~~vr~lF~~Ak~~~P~IL 266 (704)
+..-++|.||+|+||||+++++++... ..++ +.+..+ ... .+.....++..+..+-...|.+|
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~-~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~il 102 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHII-TIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVI 102 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEE-EEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEE
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEE-EcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEE
Confidence 344588999999999999999988542 2222 221111 000 11111235666667766789999
Q ss_pred EEccch
Q 005285 267 FVDEID 272 (704)
Q Consensus 267 fIDEiD 272 (704)
++||.-
T Consensus 103 llDEp~ 108 (261)
T 2eyu_A 103 FVGEMR 108 (261)
T ss_dssp EESCCC
T ss_pred EeCCCC
Confidence 999983
No 204
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.28 E-value=0.0086 Score=66.30 Aligned_cols=40 Identities=30% Similarity=0.221 Sum_probs=32.6
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCcc
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAE 239 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~ 239 (704)
|..+..-++|.|+||+|||+||..+|..+ |.++++++...
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEm 235 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM 235 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 56666678999999999999999997654 77888888654
No 205
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.28 E-value=0.0078 Score=57.36 Aligned_cols=21 Identities=38% Similarity=0.610 Sum_probs=18.2
Q ss_pred cCceEEEEcCCCChHHHHHHH
Q 005285 203 FVRGVLLSGPPGTGKTLFART 223 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAra 223 (704)
.+.-+.|.||+|+|||||+++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 455688999999999999994
No 206
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.28 E-value=0.0028 Score=61.85 Aligned_cols=37 Identities=22% Similarity=0.255 Sum_probs=29.3
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCcc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAE 239 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~ 239 (704)
.+.-+.|.||+|+||||+++++|+.+ |...+++++.+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~ 63 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDN 63 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCch
Confidence 45678899999999999999999987 65545555443
No 207
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.28 E-value=0.0059 Score=66.05 Aligned_cols=72 Identities=18% Similarity=0.355 Sum_probs=44.7
Q ss_pred CccCceEEEEcCCCChHHHHHHHHHHHcC----CCEEEEeCc-cc--------cch--hhhhHHHHHHHHHHHhhCCCeE
Q 005285 201 VQFVRGVLLSGPPGTGKTLFARTLAKESG----LPFVFASGA-EF--------TDS--EKSGAARINEMFSIARRNAPAF 265 (704)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAraiA~e~g----~~~v~is~s-~~--------~~~--~~~g~~~vr~lF~~Ak~~~P~I 265 (704)
......++|.||+|+||||+++++++... -.++.+... ++ ... .+.....++.....+....|.+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~ 212 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDV 212 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSE
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCE
Confidence 34455689999999999999999998642 233332211 11 000 0101123455666666778999
Q ss_pred EEEccch
Q 005285 266 VFVDEID 272 (704)
Q Consensus 266 LfIDEiD 272 (704)
|++||+-
T Consensus 213 illdE~~ 219 (372)
T 2ewv_A 213 IFVGEMR 219 (372)
T ss_dssp EEESCCC
T ss_pred EEECCCC
Confidence 9999983
No 208
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.27 E-value=0.0088 Score=67.10 Aligned_cols=40 Identities=20% Similarity=0.156 Sum_probs=32.8
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc----CCCEEEEeCcc
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES----GLPFVFASGAE 239 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e~----g~~~v~is~s~ 239 (704)
|.....-++|.|+||+|||+||..+|..+ |.++++++...
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~ 281 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE 281 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC
Confidence 56666678999999999999999998754 67888888754
No 209
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.27 E-value=0.028 Score=61.92 Aligned_cols=70 Identities=20% Similarity=0.211 Sum_probs=46.6
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccccchh---------------------hhhHHHHHHHHHHH
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSE---------------------KSGAARINEMFSIA 258 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~~~~---------------------~~g~~~vr~lF~~A 258 (704)
.|+-+++.||+|+||||++..+|..+ |..+..+++..+.... .......+.....+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 47788999999999999999998654 6677666654322110 00111234455666
Q ss_pred hhCCCeEEEEccch
Q 005285 259 RRNAPAFVFVDEID 272 (704)
Q Consensus 259 k~~~P~ILfIDEiD 272 (704)
+...+.+|+||...
T Consensus 176 ~~~~~DvvIIDTaG 189 (433)
T 3kl4_A 176 VKNKMDIIIVDTAG 189 (433)
T ss_dssp TTTTCSEEEEEECC
T ss_pred HhcCCCEEEEECCC
Confidence 66678999999874
No 210
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.21 E-value=0.0025 Score=61.54 Aligned_cols=29 Identities=21% Similarity=0.397 Sum_probs=26.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCEEE
Q 005285 206 GVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~g~~~v~ 234 (704)
-|.|.|+||+||||+++.+|+.++.+++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 47899999999999999999999987663
No 211
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.21 E-value=0.0017 Score=62.16 Aligned_cols=31 Identities=16% Similarity=0.228 Sum_probs=25.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcC---CCEEEEe
Q 005285 206 GVLLSGPPGTGKTLFARTLAKESG---LPFVFAS 236 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~g---~~~v~is 236 (704)
-|+|.|+||+||||+++.++..++ .++..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~ 36 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIIN 36 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEE
Confidence 588999999999999999999765 4455554
No 212
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.19 E-value=0.0027 Score=63.24 Aligned_cols=29 Identities=24% Similarity=0.440 Sum_probs=25.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCEEE
Q 005285 206 GVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~g~~~v~ 234 (704)
-|+|.|+||+||||+++.++..+|.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~ 30 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIE 30 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 37899999999999999999999876543
No 213
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.19 E-value=0.011 Score=66.81 Aligned_cols=112 Identities=23% Similarity=0.243 Sum_probs=65.7
Q ss_pred CccCceEEEEcCCCChHHHHHHH--HHHHc--CCCEEEEeCccccch-------hh------------------------
Q 005285 201 VQFVRGVLLSGPPGTGKTLFART--LAKES--GLPFVFASGAEFTDS-------EK------------------------ 245 (704)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAra--iA~e~--g~~~v~is~s~~~~~-------~~------------------------ 245 (704)
++....++|.||+|+|||+|++. +++.. +-..+++++.+.... .+
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~~ 115 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQ 115 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSCC
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccchh
Confidence 44566799999999999999999 44432 455677766542100 00
Q ss_pred ------hhHHHHHHHHHHHhhCCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccCccEEEEEE
Q 005285 246 ------SGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICA 319 (704)
Q Consensus 246 ------~g~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~ln~LL~~ld~~~~~~~~~~~~~~~~ViVIaa 319 (704)
.-...............|.+|+|||+-++... .+.+......+..++..+.. .++.||.+
T Consensus 116 ~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~-~~lD~~~~~~l~~ll~~l~~-------------~g~tvl~i 181 (525)
T 1tf7_A 116 EVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQ-YDASSVVRRELFRLVARLKQ-------------IGATTVMT 181 (525)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTT-TCCHHHHHHHHHHHHHHHHH-------------HTCEEEEE
T ss_pred hhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHh-cCCHHHHHHHHHHHHHHHHH-------------CCCEEEEE
Confidence 00111223333444456889999999876432 11223344556666666643 12567777
Q ss_pred cCCCCCC
Q 005285 320 TNRPDEL 326 (704)
Q Consensus 320 TN~p~~L 326 (704)
|++.+.+
T Consensus 182 tH~~~~~ 188 (525)
T 1tf7_A 182 TERIEEY 188 (525)
T ss_dssp EECSSSS
T ss_pred ecCCCCc
Confidence 8777665
No 214
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.18 E-value=0.0028 Score=61.73 Aligned_cols=29 Identities=28% Similarity=0.328 Sum_probs=25.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCEEEE
Q 005285 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~g~~~v~i 235 (704)
.|.|.|++|+||||+++.+|+ +|++++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~ 31 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDA 31 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence 488999999999999999999 88777654
No 215
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.17 E-value=0.0039 Score=60.55 Aligned_cols=30 Identities=33% Similarity=0.629 Sum_probs=27.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCEEEE
Q 005285 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~g~~~v~i 235 (704)
.|.|.|++|+|||++++.+|+.+|++++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 688999999999999999999999888743
No 216
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.15 E-value=0.0039 Score=59.98 Aligned_cols=30 Identities=23% Similarity=0.377 Sum_probs=26.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHc---CCCEEEEe
Q 005285 207 VLLSGPPGTGKTLFARTLAKES---GLPFVFAS 236 (704)
Q Consensus 207 vLL~GPPGTGKT~LAraiA~e~---g~~~v~is 236 (704)
|.|.|++|+||||+++.++..+ |.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 7899999999999999999988 99988654
No 217
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.15 E-value=0.004 Score=63.16 Aligned_cols=40 Identities=20% Similarity=0.157 Sum_probs=33.2
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCC--------EEEEeCccccc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESGLP--------FVFASGAEFTD 242 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g~~--------~v~is~s~~~~ 242 (704)
.|.-|.|.|+||+||||+|+.++..+|.+ ++.++..++..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 45679999999999999999999999876 44677777654
No 218
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.13 E-value=0.0024 Score=62.34 Aligned_cols=30 Identities=13% Similarity=0.051 Sum_probs=25.5
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCE
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPF 232 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g~~~ 232 (704)
.+.-|.|.|+||+||||+++.++..++.+.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~ 38 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNN 38 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 456799999999999999999999875443
No 219
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.11 E-value=0.004 Score=60.23 Aligned_cols=31 Identities=26% Similarity=0.290 Sum_probs=27.1
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCEEE
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~ 234 (704)
.|..|.|.|++|+|||++++.+|+. |.+++.
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~-g~~~id 37 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW-GYPVLD 37 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT-TCCEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC-CCEEEc
Confidence 3567899999999999999999998 888764
No 220
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.10 E-value=0.0035 Score=63.21 Aligned_cols=30 Identities=30% Similarity=0.637 Sum_probs=27.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCEE
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFV 233 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g~~~v 233 (704)
|.-+.|.||||+||||+++.+|..+|...+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 577999999999999999999999987654
No 221
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.10 E-value=0.0025 Score=62.22 Aligned_cols=27 Identities=22% Similarity=0.197 Sum_probs=23.8
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcC
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESG 229 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g 229 (704)
.|.-|+|.|+||+||||+++.++..++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356799999999999999999998764
No 222
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.07 E-value=0.0034 Score=61.32 Aligned_cols=29 Identities=38% Similarity=0.461 Sum_probs=25.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCCCEEE
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e~g~~~v~ 234 (704)
..+.|.||+|+||||+++.+|+ +|.+++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 3578999999999999999998 8888763
No 223
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.07 E-value=0.0039 Score=63.14 Aligned_cols=31 Identities=35% Similarity=0.525 Sum_probs=27.1
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCEE
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFV 233 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v 233 (704)
.|..+.|.||||+|||++++.+|+.+|.+++
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~ 38 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYL 38 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 3567899999999999999999999997765
No 224
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.03 E-value=0.0055 Score=59.51 Aligned_cols=32 Identities=22% Similarity=0.164 Sum_probs=26.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCC--EEEE
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESGLP--FVFA 235 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g~~--~v~i 235 (704)
+.-|+|.|+||+||||+++.++..++.. ++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~ 37 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLT 37 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEe
Confidence 4568999999999999999999988763 5443
No 225
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.91 E-value=0.0039 Score=63.73 Aligned_cols=31 Identities=32% Similarity=0.488 Sum_probs=28.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCEEE
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~ 234 (704)
...|.|.|++|+||||+++.+|+.+|.+|+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d 78 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFD 78 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEe
Confidence 4579999999999999999999999998775
No 226
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.88 E-value=0.0037 Score=66.51 Aligned_cols=71 Identities=15% Similarity=0.274 Sum_probs=49.3
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcC--CCEEEEeCcc-cc-----chh-hh--hHHHHHHHHHHHhhCCCeEEEEccc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESG--LPFVFASGAE-FT-----DSE-KS--GAARINEMFSIARRNAPAFVFVDEI 271 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g--~~~v~is~s~-~~-----~~~-~~--g~~~vr~lF~~Ak~~~P~ILfIDEi 271 (704)
....++|.||+|+|||||++++++... .-.+.+.+.. +. ... .. +....+.....|....|.+|++||.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~ 249 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGEL 249 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCC
Confidence 345799999999999999999998753 2345555432 11 110 01 3345677778888889999999997
Q ss_pred hh
Q 005285 272 DA 273 (704)
Q Consensus 272 Da 273 (704)
-.
T Consensus 250 ~~ 251 (330)
T 2pt7_A 250 RS 251 (330)
T ss_dssp CS
T ss_pred Ch
Confidence 53
No 227
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.83 E-value=0.0048 Score=65.01 Aligned_cols=40 Identities=25% Similarity=0.371 Sum_probs=33.1
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccccc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~~ 242 (704)
.|+-++|.||+|+|||+||..+|...+.++++.+...+..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~ 48 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYK 48 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccccc
Confidence 4667899999999999999999999988877766555443
No 228
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.76 E-value=0.037 Score=59.03 Aligned_cols=40 Identities=18% Similarity=0.123 Sum_probs=32.4
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHH---cCCCEEEEeCcc
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAE 239 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e---~g~~~v~is~s~ 239 (704)
|..+..-++|.|+||+|||+||..+|.. .|.++++++...
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEm 84 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEM 84 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 4555667899999999999999999875 478888887654
No 229
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.75 E-value=0.0044 Score=66.09 Aligned_cols=38 Identities=24% Similarity=0.286 Sum_probs=32.0
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF 240 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~ 240 (704)
.++-|+|.||+|+|||+|+..+|+.++.+++..+...+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qv 76 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQV 76 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEccccccc
Confidence 34578999999999999999999999988877665543
No 230
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.75 E-value=0.005 Score=63.79 Aligned_cols=30 Identities=30% Similarity=0.542 Sum_probs=25.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc-CCCEE
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKES-GLPFV 233 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~-g~~~v 233 (704)
|.-|+|.|+||+||||+++.++... |.+++
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 4678999999999999999999874 55444
No 231
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.71 E-value=0.0063 Score=59.61 Aligned_cols=30 Identities=27% Similarity=0.316 Sum_probs=26.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCCCEEE
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e~g~~~v~ 234 (704)
..|.|.|++|+||||+++.++..+|++++.
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid 42 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVN 42 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEE
Confidence 457899999999999999999988988764
No 232
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.69 E-value=0.0068 Score=59.72 Aligned_cols=31 Identities=32% Similarity=0.385 Sum_probs=26.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCEEEE
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~i 235 (704)
|.-|.|.|++|+||||+++.++. +|.+++..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 45689999999999999999998 88776643
No 233
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.67 E-value=0.0069 Score=59.58 Aligned_cols=31 Identities=29% Similarity=0.500 Sum_probs=27.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCEEE
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~ 234 (704)
|..+.|.|++|+|||++++.+|..+|.+++.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~ 33 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVD 33 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 4568999999999999999999999988764
No 234
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.66 E-value=0.008 Score=57.65 Aligned_cols=35 Identities=37% Similarity=0.399 Sum_probs=27.9
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeC
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASG 237 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~ 237 (704)
.+..++|.|+||+|||++++.+|..+ |.++..+++
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 45678999999999999999999876 445555553
No 235
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.64 E-value=0.008 Score=60.23 Aligned_cols=33 Identities=24% Similarity=0.485 Sum_probs=28.4
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCCCEEE
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~ 234 (704)
..+..|.|.|++|+|||++++.+|+.+|++++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 345568999999999999999999999987753
No 236
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.64 E-value=0.0077 Score=59.11 Aligned_cols=42 Identities=26% Similarity=0.323 Sum_probs=30.6
Q ss_pred HHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHHcC
Q 005285 181 DLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESG 229 (704)
Q Consensus 181 ~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e~g 229 (704)
+.+.++++.+... .+.+.-+.|.||+|+|||||++.+++.+.
T Consensus 6 ~~~~~~~~~~~~~-------~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 6 ALCQGVLERLDPR-------QPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHHSCTT-------CCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-------CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3455555555432 23455678999999999999999998764
No 237
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.62 E-value=0.0057 Score=59.80 Aligned_cols=31 Identities=26% Similarity=0.280 Sum_probs=25.5
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc-CCCEE
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES-GLPFV 233 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~-g~~~v 233 (704)
.+.-+.|.|+||+||||+++.+++.+ +++++
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i 51 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHLPNCSVI 51 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTSTTEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcEEE
Confidence 34567899999999999999999987 55544
No 238
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.60 E-value=0.045 Score=57.18 Aligned_cols=37 Identities=24% Similarity=0.287 Sum_probs=29.8
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHH----cCCCEEEEeCcc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKE----SGLPFVFASGAE 239 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e----~g~~~v~is~s~ 239 (704)
.+..++|.||+|+||||++..+|.. .|..+..+++..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 4678899999999999999999864 366777776654
No 239
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.59 E-value=0.0063 Score=59.86 Aligned_cols=38 Identities=18% Similarity=0.194 Sum_probs=30.5
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc----CCCEEEEeCccc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES----GLPFVFASGAEF 240 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~----g~~~v~is~s~~ 240 (704)
.+.-++|.|+||+||||+++.+++.+ |.+++.+++..+
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 45678999999999999999999865 567887775443
No 240
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.57 E-value=0.022 Score=55.56 Aligned_cols=39 Identities=18% Similarity=0.168 Sum_probs=30.1
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccc
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEF 240 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~ 240 (704)
..+.-+.|.||+|+||||+++.+++.+ +.+++..+...+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~ 61 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH 61 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcc
Confidence 345668899999999999999999865 667766654433
No 241
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.52 E-value=0.0088 Score=60.80 Aligned_cols=30 Identities=23% Similarity=0.482 Sum_probs=26.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCEE
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFV 233 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g~~~v 233 (704)
...|.|.||+|+||||+++.+|+.+|.+++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 346889999999999999999999998765
No 242
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.51 E-value=0.081 Score=54.66 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=21.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
..-+.|.||.|+|||||++++++-.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4458899999999999999998743
No 243
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.51 E-value=0.0051 Score=66.02 Aligned_cols=31 Identities=29% Similarity=0.417 Sum_probs=27.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCCCEEEE
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e~g~~~v~i 235 (704)
..++|.||||+|||++++++|+.++.+|+.+
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l 55 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHTF 55 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeeee
Confidence 4699999999999999999999998887543
No 244
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.51 E-value=0.0072 Score=59.07 Aligned_cols=29 Identities=21% Similarity=0.424 Sum_probs=25.2
Q ss_pred CccCceEEEEcCCCChHHHHHHHHHHHcC
Q 005285 201 VQFVRGVLLSGPPGTGKTLFARTLAKESG 229 (704)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAraiA~e~g 229 (704)
...++-++|.||||+||||+++.++..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 34567799999999999999999999874
No 245
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.47 E-value=0.033 Score=54.72 Aligned_cols=69 Identities=17% Similarity=0.155 Sum_probs=43.0
Q ss_pred CceEEEEcCCCChHH-HHHHHHHH--HcCCCEEEEeCc---cccchh--hhh-------HHHHHHHHHHHhhCCCeEEEE
Q 005285 204 VRGVLLSGPPGTGKT-LFARTLAK--ESGLPFVFASGA---EFTDSE--KSG-------AARINEMFSIARRNAPAFVFV 268 (704)
Q Consensus 204 p~gvLL~GPPGTGKT-~LAraiA~--e~g~~~v~is~s---~~~~~~--~~g-------~~~vr~lF~~Ak~~~P~ILfI 268 (704)
.+-.++|||.|+||| .|.+++.+ +.+..++.++.. .+.... ..+ .....++++..+ ...+|+|
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~--~~DvIlI 97 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEAL--GVAVIGI 97 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHH--TCSEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhcc--CCCEEEE
Confidence 345688999999999 88888865 457888888754 222110 001 011223333332 2469999
Q ss_pred ccchhh
Q 005285 269 DEIDAI 274 (704)
Q Consensus 269 DEiDal 274 (704)
||+.-+
T Consensus 98 DEaQFf 103 (195)
T 1w4r_A 98 DEGQFF 103 (195)
T ss_dssp SSGGGC
T ss_pred Echhhh
Confidence 999987
No 246
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.44 E-value=0.0088 Score=61.97 Aligned_cols=30 Identities=27% Similarity=0.328 Sum_probs=25.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCEEE
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~ 234 (704)
|.-|.|.|+||+||||+|+.++ ++|.+++.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id 104 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIID 104 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEe
Confidence 5668999999999999999999 67877654
No 247
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.38 E-value=0.0095 Score=57.11 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=22.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcC
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESG 229 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g 229 (704)
.+-+.|.||+|+|||||++.+++...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45688999999999999999998753
No 248
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.32 E-value=0.031 Score=58.72 Aligned_cols=27 Identities=30% Similarity=0.365 Sum_probs=22.9
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHc
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
+...-+.|.||+|+|||||++.+++..
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 445568999999999999999998754
No 249
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.32 E-value=0.055 Score=52.31 Aligned_cols=23 Identities=35% Similarity=0.625 Sum_probs=19.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e 227 (704)
+.+++.+|+|+|||+++-..+..
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999998877664
No 250
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.27 E-value=0.01 Score=57.50 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=23.1
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
.+.-+.|.||+|+||||+++.+++..
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45678999999999999999999876
No 251
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.27 E-value=0.0092 Score=63.68 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=27.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeC
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFASG 237 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~ 237 (704)
+-|+|.||+|+|||++|+.+|..++..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 568999999999999999999999866555443
No 252
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.26 E-value=0.0072 Score=66.28 Aligned_cols=31 Identities=29% Similarity=0.378 Sum_probs=27.1
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCCEE
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFV 233 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g~~~v 233 (704)
.|.-|+|+|+||+||||+|+.++..++..++
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~i 287 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHV 287 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCEEC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcEEE
Confidence 4677899999999999999999999876654
No 253
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.22 E-value=0.0092 Score=62.99 Aligned_cols=38 Identities=24% Similarity=0.231 Sum_probs=29.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCcccc
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~~ 241 (704)
++-++|.||+|+|||+|+..+|..++..+++.+...+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvY 40 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVY 40 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGB
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcccce
Confidence 34688999999999999999999988766655544333
No 254
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.17 E-value=0.081 Score=58.30 Aligned_cols=70 Identities=21% Similarity=0.180 Sum_probs=47.7
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHc----CCCEEEEeCccccchhh---------------------hhHHHHHHHHH
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKES----GLPFVFASGAEFTDSEK---------------------SGAARINEMFS 256 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~----g~~~v~is~s~~~~~~~---------------------~g~~~vr~lF~ 256 (704)
..|+.+++.|++|+||||++-.+|..+ |..+..+++.-+..... .....++..+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 457889999999999999999998643 77888888765432100 00122355666
Q ss_pred HHhhCCCeEEEEccc
Q 005285 257 IARRNAPAFVFVDEI 271 (704)
Q Consensus 257 ~Ak~~~P~ILfIDEi 271 (704)
.++.....+++||=.
T Consensus 178 ~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEECC
Confidence 666555578998874
No 255
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.17 E-value=0.011 Score=58.16 Aligned_cols=27 Identities=30% Similarity=0.397 Sum_probs=23.6
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcC
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESG 229 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g 229 (704)
.+.-+.|.||+|+|||++++.+++...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 355688999999999999999999864
No 256
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.11 E-value=0.014 Score=57.50 Aligned_cols=29 Identities=24% Similarity=0.384 Sum_probs=27.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCCCEE
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKESGLPFV 233 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e~g~~~v 233 (704)
.-|.|.|++|||||++++.+|+.+|.+|+
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~ 35 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLY 35 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEE
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEE
Confidence 36889999999999999999999999988
No 257
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.09 E-value=0.011 Score=57.66 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=24.0
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcC
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESG 229 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g 229 (704)
.+.-+.|.||+|+||||+++.+++.++
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 445688999999999999999999877
No 258
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.08 E-value=0.056 Score=60.70 Aligned_cols=36 Identities=22% Similarity=0.225 Sum_probs=28.4
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeC
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASG 237 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~ 237 (704)
..|+.|+|.|+||+||||++..+|..+ |..+..+++
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 357789999999999999999998654 677776766
No 259
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.07 E-value=0.014 Score=56.04 Aligned_cols=33 Identities=24% Similarity=0.421 Sum_probs=24.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCcc
Q 005285 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFASGAE 239 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~ 239 (704)
-+.|.||+|+||||+++.+++..+. .+.+++.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~ 36 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDI 36 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC-eEEEcccc
Confidence 4789999999999999999985542 24444433
No 260
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.06 E-value=0.062 Score=56.76 Aligned_cols=38 Identities=26% Similarity=0.288 Sum_probs=29.9
Q ss_pred CccCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCc
Q 005285 201 VQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGA 238 (704)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s 238 (704)
...++.+++.||+|+||||++..+|..+ |..+..+++.
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3567789999999999999999998754 5666666543
No 261
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.94 E-value=0.019 Score=64.75 Aligned_cols=69 Identities=16% Similarity=0.222 Sum_probs=45.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcC--CCEEEEeCcc-ccch------------hhhhHHHHHHHHHHHhhCCCeEEEE
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESG--LPFVFASGAE-FTDS------------EKSGAARINEMFSIARRNAPAFVFV 268 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g--~~~v~is~s~-~~~~------------~~~g~~~vr~lF~~Ak~~~P~ILfI 268 (704)
..++++.||+|+||||+++++++... ...+.+.... +.-. .+.+...+..+...+....|.++++
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iiv 339 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIV 339 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEe
Confidence 45799999999999999999998763 3455554432 2100 0001112445556666778999999
Q ss_pred ccch
Q 005285 269 DEID 272 (704)
Q Consensus 269 DEiD 272 (704)
+|+-
T Consensus 340 gEir 343 (511)
T 2oap_1 340 GEVR 343 (511)
T ss_dssp SCCC
T ss_pred CCcC
Confidence 9973
No 262
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.94 E-value=0.013 Score=57.89 Aligned_cols=32 Identities=28% Similarity=0.409 Sum_probs=26.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCEEEEe
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is 236 (704)
.++++|.||+|+|||++|..++...+ +++..+
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 57899999999999999999998765 555433
No 263
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.80 E-value=0.016 Score=55.96 Aligned_cols=33 Identities=30% Similarity=0.373 Sum_probs=25.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCc
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGA 238 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s 238 (704)
+.-+.|.||+|+||||+++.+++... -+.++..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~~--~~~~~~~ 39 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKALA--EIKISIS 39 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSS--SEEECCC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC--CeEEece
Confidence 44578999999999999999999853 3444443
No 264
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.79 E-value=0.021 Score=55.70 Aligned_cols=28 Identities=39% Similarity=0.656 Sum_probs=23.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCCCE
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKESGLPF 232 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e~g~~~ 232 (704)
|.|+|+||+|+|||+|++.+..+..-.|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 4589999999999999999988764333
No 265
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.75 E-value=0.016 Score=55.83 Aligned_cols=25 Identities=40% Similarity=0.689 Sum_probs=22.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcC
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKESG 229 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e~g 229 (704)
+-+.|.||+|+||||+++.+++...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999998753
No 266
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.74 E-value=0.015 Score=63.36 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=29.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCEEEEeCccc
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF 240 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~~ 240 (704)
++-|+|.||+|+|||+|+..+|..++..+++.+...+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~Qv 38 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQV 38 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCccce
Confidence 3467899999999999999999999877665544333
No 267
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.69 E-value=0.058 Score=52.69 Aligned_cols=69 Identities=10% Similarity=0.049 Sum_probs=41.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccc--------cchhhh-----hHHHHHHHHHHHhhCCCeEEEE
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEF--------TDSEKS-----GAARINEMFSIARRNAPAFVFV 268 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~--------~~~~~~-----g~~~vr~lF~~Ak~~~P~ILfI 268 (704)
+-.+++||+|+|||+.+-.++..+ |..++.+...-. .+..+. ......++++.+.. ...+|+|
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~~-~~dvViI 87 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFEE-DTEVIAI 87 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCCT-TCSEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHhc-cCCEEEE
Confidence 456889999999999988887654 776665542211 111110 00112355555543 3579999
Q ss_pred ccchhh
Q 005285 269 DEIDAI 274 (704)
Q Consensus 269 DEiDal 274 (704)
||+..+
T Consensus 88 DEaqfl 93 (191)
T 1xx6_A 88 DEVQFF 93 (191)
T ss_dssp CSGGGS
T ss_pred ECCCCC
Confidence 999876
No 268
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.64 E-value=0.1 Score=59.85 Aligned_cols=28 Identities=32% Similarity=0.439 Sum_probs=23.4
Q ss_pred CccCceEEEEcCCCChHHHHHHHHHHHc
Q 005285 201 VQFVRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
+++..-+.|.||+|+|||||++.+++..
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 3445668999999999999999998854
No 269
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.57 E-value=0.12 Score=55.03 Aligned_cols=34 Identities=24% Similarity=0.317 Sum_probs=26.2
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEe
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFAS 236 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is 236 (704)
.+.-|.|.|+||+|||+++.+++..+ |..+..++
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 34568999999999999999998764 55544443
No 270
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.57 E-value=0.022 Score=55.28 Aligned_cols=32 Identities=19% Similarity=0.422 Sum_probs=28.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHcCCCEEEEeCcc
Q 005285 207 VLLSGPPGTGKTLFARTLAKESGLPFVFASGAE 239 (704)
Q Consensus 207 vLL~GPPGTGKT~LAraiA~e~g~~~v~is~s~ 239 (704)
+|++|++|+|||++|..+|.. +.+.+++..+.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 789999999999999999988 88998888755
No 271
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.57 E-value=0.11 Score=54.31 Aligned_cols=36 Identities=31% Similarity=0.280 Sum_probs=29.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCcc
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAE 239 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~ 239 (704)
+..+++.|++|+|||+++..+|..+ |..+..+++.-
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 6778899999999999999998755 66777776553
No 272
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.56 E-value=0.086 Score=60.15 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=22.8
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHc
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
++..-+.|.||+|+|||||++.+++..
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 344568899999999999999998854
No 273
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.45 E-value=0.028 Score=64.71 Aligned_cols=37 Identities=30% Similarity=0.372 Sum_probs=32.3
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCcc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAE 239 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~ 239 (704)
.+.-|+|.|+||+||||+|++++..+ |.+++.+++..
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~ 90 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 90 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHH
Confidence 45678999999999999999999998 99999886443
No 274
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.45 E-value=0.11 Score=57.96 Aligned_cols=28 Identities=29% Similarity=0.265 Sum_probs=24.0
Q ss_pred CccCceEEEEcCCCChHHHHHHHHHHHc
Q 005285 201 VQFVRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
+..+.-+.|.||+|+||||+++.||+.+
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 4456678999999999999999999864
No 275
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=94.44 E-value=0.11 Score=62.40 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=21.4
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHH
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAK 226 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~ 226 (704)
.....++|.||.|+||||+.|.++.
T Consensus 671 ~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 671 DSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp TSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCchHHHHHHHHH
Confidence 3456689999999999999999974
No 276
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.44 E-value=0.1 Score=57.27 Aligned_cols=66 Identities=24% Similarity=0.323 Sum_probs=39.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCC---CEEEEeCc-ccc-c-----hhh-hhHHHHHHHHHHHhhCCCeEEEEccc
Q 005285 206 GVLLSGPPGTGKTLFARTLAKESGL---PFVFASGA-EFT-D-----SEK-SGAARINEMFSIARRNAPAFVFVDEI 271 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~g~---~~v~is~s-~~~-~-----~~~-~g~~~vr~lF~~Ak~~~P~ILfIDEi 271 (704)
.+++.||+|+||||+++++++.... .++.+.-. ++. . ... ...-........+-...|.++++.|+
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEi 245 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEI 245 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCC
T ss_pred eEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCc
Confidence 4789999999999999999997642 34333211 111 0 000 00011233344445567999999985
No 277
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.42 E-value=0.12 Score=64.71 Aligned_cols=29 Identities=28% Similarity=0.315 Sum_probs=24.2
Q ss_pred CccCceEEEEcCCCChHHHHHHHHHHHcC
Q 005285 201 VQFVRGVLLSGPPGTGKTLFARTLAKESG 229 (704)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAraiA~e~g 229 (704)
+++..-+.|+||+|+|||||++.+.++..
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 34456689999999999999999998763
No 278
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.34 E-value=0.024 Score=57.13 Aligned_cols=29 Identities=31% Similarity=0.566 Sum_probs=25.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCEEE
Q 005285 206 GVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~g~~~v~ 234 (704)
-+-|.||||+||||+|+.+|..+|++.++
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is 38 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIS 38 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEEC
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeee
Confidence 36789999999999999999999988763
No 279
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=94.31 E-value=0.11 Score=50.04 Aligned_cols=18 Identities=33% Similarity=0.429 Sum_probs=15.4
Q ss_pred ceEEEEcCCCChHHHHHH
Q 005285 205 RGVLLSGPPGTGKTLFAR 222 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAr 222 (704)
+.+++.+|+|+|||+.+-
T Consensus 39 ~~~li~~~TGsGKT~~~~ 56 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFA 56 (207)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 579999999999998643
No 280
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.27 E-value=0.022 Score=55.59 Aligned_cols=26 Identities=42% Similarity=0.707 Sum_probs=22.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcC
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESG 229 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g 229 (704)
++-+.|.||+|+|||||++.+++...
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 45689999999999999999998753
No 281
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.21 E-value=0.15 Score=54.85 Aligned_cols=26 Identities=19% Similarity=0.164 Sum_probs=21.8
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
...-+-|.||+|+|||||+|++++-.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 34457899999999999999998743
No 282
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=94.20 E-value=0.12 Score=62.53 Aligned_cols=43 Identities=23% Similarity=0.280 Sum_probs=30.5
Q ss_pred ecCcccHHHHHHHHHHhCCchhhhhcCCccCceEEEEcCCCChHHHHHHHHHHH
Q 005285 174 VLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 174 vG~~~~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAraiA~e 227 (704)
+|.++..+.|.+.+. .. ...+-|.|+||+|.|||+||+.++..
T Consensus 131 VGRe~eLeeL~elL~---~~--------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALL---EL--------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHH---HC--------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHh---cc--------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 677755555555443 21 12467899999999999999999863
No 283
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.05 E-value=0.032 Score=54.84 Aligned_cols=27 Identities=19% Similarity=0.352 Sum_probs=23.6
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcC
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESG 229 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g 229 (704)
.++-+.|.||+|+|||+|++++++...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 356788999999999999999998764
No 284
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.04 E-value=0.12 Score=53.87 Aligned_cols=70 Identities=23% Similarity=0.165 Sum_probs=44.4
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCccccchhh---------------------hhHHHHHHHHHHH
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEK---------------------SGAARINEMFSIA 258 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~~~~~~~---------------------~g~~~vr~lF~~A 258 (704)
.++.+.+.|++|+|||++++.+|..+ +..+..+++.-...... ......+.....+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 46678889999999999999998754 55666555432111000 0011234555666
Q ss_pred hhCCCeEEEEccch
Q 005285 259 RRNAPAFVFVDEID 272 (704)
Q Consensus 259 k~~~P~ILfIDEiD 272 (704)
+...+.+|+||+--
T Consensus 177 ~~~~~D~viiDtpp 190 (295)
T 1ls1_A 177 RLEARDLILVDTAG 190 (295)
T ss_dssp HHHTCCEEEEECCC
T ss_pred HhCCCCEEEEeCCC
Confidence 55567899999863
No 285
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=94.02 E-value=0.083 Score=61.08 Aligned_cols=33 Identities=30% Similarity=0.534 Sum_probs=22.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHH---cCCCEEEEeCc
Q 005285 206 GVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGA 238 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e---~g~~~v~is~s 238 (704)
-.|++||||||||+++-.+... .|..++.++.+
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T 242 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 242 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence 4689999999999765544332 36666666544
No 286
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.02 E-value=0.037 Score=52.33 Aligned_cols=26 Identities=31% Similarity=0.356 Sum_probs=22.9
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
...-+.|.||.|+|||||+|++++..
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34458899999999999999999986
No 287
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.98 E-value=0.12 Score=59.10 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=23.0
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHc
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
++..-+-|.||+|+|||||++.+++..
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 445568899999999999999998854
No 288
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.87 E-value=0.034 Score=54.43 Aligned_cols=27 Identities=37% Similarity=0.503 Sum_probs=23.4
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcC
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESG 229 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g 229 (704)
...-+.|.||+|+|||||++++++...
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 445688999999999999999999864
No 289
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=93.87 E-value=0.036 Score=55.53 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=27.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCCCEEE
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e~g~~~v~ 234 (704)
.-|.+.|++|||||++++.+|..+|.+|+.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 467899999999999999999999999863
No 290
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.83 E-value=0.036 Score=55.80 Aligned_cols=29 Identities=17% Similarity=0.126 Sum_probs=24.5
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCCC
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESGLP 231 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g~~ 231 (704)
.+.-+-|.||+|+||||+++.+++.+|..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 34457899999999999999999988754
No 291
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.83 E-value=0.06 Score=59.33 Aligned_cols=36 Identities=33% Similarity=0.356 Sum_probs=29.5
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGA 238 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s 238 (704)
.|+.|++.|+||+|||+++..+|..+ |..+..+++.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 46789999999999999999998764 5667767654
No 292
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=93.78 E-value=0.2 Score=57.08 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=22.7
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHc
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
++..-+.|.||+|+|||||++.+++..
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 344568899999999999999998854
No 293
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.76 E-value=0.033 Score=55.25 Aligned_cols=26 Identities=27% Similarity=0.515 Sum_probs=22.9
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
...-+.|.||+|+|||||++.+++..
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34568899999999999999999976
No 294
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.74 E-value=0.017 Score=56.21 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=21.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcC
Q 005285 206 GVLLSGPPGTGKTLFARTLAKESG 229 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~g 229 (704)
-|.|.|++|+||||+++.++..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999874
No 295
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.74 E-value=0.028 Score=58.58 Aligned_cols=39 Identities=18% Similarity=0.254 Sum_probs=27.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcC---CCEEEEeCccccc
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESG---LPFVFASGAEFTD 242 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g---~~~v~is~s~~~~ 242 (704)
+.-|.|.||+|+||||+|+.++..+| ..+..+++.++..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR 46 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence 34588999999999999999998765 5566677666653
No 296
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.73 E-value=0.039 Score=62.27 Aligned_cols=37 Identities=24% Similarity=0.381 Sum_probs=28.7
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCcc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAE 239 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s~ 239 (704)
.|.-|+|.|.||+|||++|+.+|..+ +++...++..+
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~ 73 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGE 73 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccH
Confidence 35678999999999999999999987 44554555333
No 297
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.73 E-value=0.042 Score=58.96 Aligned_cols=70 Identities=19% Similarity=0.323 Sum_probs=45.4
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcC--CCEEEEeCc-ccc-----c---hh-----hh---hHHHHHHHHHHHhhCCC
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESG--LPFVFASGA-EFT-----D---SE-----KS---GAARINEMFSIARRNAP 263 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g--~~~v~is~s-~~~-----~---~~-----~~---g~~~vr~lF~~Ak~~~P 263 (704)
....++|.||+|+|||||++++++... .-.+.+... ++. . .. .. ....++.....+....|
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~p 253 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKP 253 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCC
Confidence 445799999999999999999998753 234444422 111 0 00 00 12235666777777789
Q ss_pred eEEEEccch
Q 005285 264 AFVFVDEID 272 (704)
Q Consensus 264 ~ILfIDEiD 272 (704)
.+++++|+.
T Consensus 254 d~~l~~e~r 262 (361)
T 2gza_A 254 TRILLAELR 262 (361)
T ss_dssp SEEEESCCC
T ss_pred CEEEEcCch
Confidence 999999975
No 298
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=93.70 E-value=0.21 Score=56.91 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=22.6
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHc
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
++..-+.|.||+|+|||||++.+++..
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344568899999999999999998753
No 299
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.69 E-value=0.11 Score=51.66 Aligned_cols=66 Identities=9% Similarity=0.054 Sum_probs=38.5
Q ss_pred EEEEcCCCChHHHHHHHHHHH---cCCCEEEEeCccccchhhh--hHHH------------HHHHHHHHhhCCCeEEEEc
Q 005285 207 VLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEFTDSEKS--GAAR------------INEMFSIARRNAPAFVFVD 269 (704)
Q Consensus 207 vLL~GPPGTGKT~LAraiA~e---~g~~~v~is~s~~~~~~~~--g~~~------------vr~lF~~Ak~~~P~ILfID 269 (704)
.+++||.|+|||+.+-.++.. .|..++.+...--.. ++. ..++ ..++++.+.. ...+|+||
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R-~ge~~i~s~~g~~~~a~~~~~~~~~~~~~~~-~~dvViID 108 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNR-YSEEDVVSHNGLKVKAVPVSASKDIFKHITE-EMDVIAID 108 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC------------------CCEEECSSGGGGGGGCCS-SCCEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCc-chHHHHHhhcCCeeEEeecCCHHHHHHHHhc-CCCEEEEE
Confidence 458899999999988888654 477777765432211 111 0111 1233333332 35699999
Q ss_pred cchhh
Q 005285 270 EIDAI 274 (704)
Q Consensus 270 EiDal 274 (704)
|+.-+
T Consensus 109 EaQF~ 113 (214)
T 2j9r_A 109 EVQFF 113 (214)
T ss_dssp CGGGS
T ss_pred CcccC
Confidence 99987
No 300
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.69 E-value=0.059 Score=53.97 Aligned_cols=33 Identities=18% Similarity=0.315 Sum_probs=26.4
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcC--CCEEEE
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESG--LPFVFA 235 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g--~~~v~i 235 (704)
.+.-|.|.||||+||||+++.+++.++ .+++..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 345678899999999999999999875 465543
No 301
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=93.67 E-value=0.2 Score=60.26 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHH
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAK 226 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~ 226 (704)
..-++|.||.|+||||+.|.+|.
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999953
No 302
>2lna_A AFG3-like protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, MPP, hydrolase; NMR {Homo sapiens}
Probab=93.60 E-value=0.088 Score=45.92 Aligned_cols=57 Identities=12% Similarity=0.123 Sum_probs=42.2
Q ss_pred CCccchHHHH-HhhccCCccEEEEEcCeeEEEEEEecCce----eEEEEeCCCChhHHHHHHh
Q 005285 35 RPKLPYTYFL-EKLDSSEVAAVVFTEDLKRLYVTMKEGFP----LEYVVDIPLDPYLFETIAS 92 (704)
Q Consensus 35 ~~~~~y~~f~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~l~~ 92 (704)
..+|+|++|. ++|++|.|++|++.++ ..+.+.++.+.. ..|.+.++.-+.|.+.|.+
T Consensus 15 ~~eIs~~eF~~~~L~kG~V~kI~V~nk-~~v~V~l~~~a~~~~~~~~~f~IGSvd~FE~~Le~ 76 (99)
T 2lna_A 15 GREITWKDFVNNYLSKGVVDRLEVVNK-RFVRVTFTPGKTPVDGQYVWFNIGSVDTFERNLET 76 (99)
T ss_dssp SEECCHHHHHHHTGGGTCEEEEEEETT-TEEEEEECTTTSCSTTCCEEEECSCHHHHHHHHHH
T ss_pred CcccCHHHHHHHHhhCCCceEEEEEcC-CEEEEEEcCCCcCCCCceEEEEeCCHHHHHHHHHH
Confidence 4579999999 7999999999988744 467777876541 2367778765666666654
No 303
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.59 E-value=0.019 Score=57.10 Aligned_cols=26 Identities=38% Similarity=0.466 Sum_probs=16.5
Q ss_pred cCceEEEEcCCCChHHHHHHHHH-HHc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLA-KES 228 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA-~e~ 228 (704)
...-+.|.||+|+||||+++.++ +..
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34568899999999999999999 765
No 304
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=93.59 E-value=0.15 Score=49.12 Aligned_cols=18 Identities=33% Similarity=0.349 Sum_probs=15.4
Q ss_pred ceEEEEcCCCChHHHHHH
Q 005285 205 RGVLLSGPPGTGKTLFAR 222 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAr 222 (704)
+.+++.+|+|+|||+.+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 679999999999997544
No 305
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.54 E-value=0.042 Score=57.74 Aligned_cols=29 Identities=28% Similarity=0.512 Sum_probs=25.3
Q ss_pred CCccCceEEEEcCCCChHHHHHHHHHHHc
Q 005285 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
.+++...+.|+||+|+|||||++.|++..
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 45556678999999999999999999986
No 306
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.53 E-value=0.066 Score=56.10 Aligned_cols=28 Identities=25% Similarity=0.253 Sum_probs=24.2
Q ss_pred CccCceEEEEcCCCChHHHHHHHHHHHc
Q 005285 201 VQFVRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
...+.-+.|.||+|+||||+++.+|+.+
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4456778999999999999999999864
No 307
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.45 E-value=0.28 Score=53.81 Aligned_cols=36 Identities=28% Similarity=0.181 Sum_probs=28.8
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGA 238 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s 238 (704)
.|..+++.|++|+||||++..+|..+ |..+..+++.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D 135 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecc
Confidence 56778899999999999999998754 5566666653
No 308
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.29 E-value=0.049 Score=54.27 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=23.5
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcC
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKESG 229 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~g 229 (704)
+...-+.|.||+|+|||||++++++...
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3455688999999999999999999764
No 309
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.29 E-value=0.057 Score=52.10 Aligned_cols=28 Identities=29% Similarity=0.497 Sum_probs=23.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCE
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESGLPF 232 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g~~~ 232 (704)
.+|+||.|++|+|||++|.++... |..+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~l 43 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQL 43 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeE
Confidence 579999999999999999999874 5443
No 310
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.24 E-value=0.09 Score=54.71 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=24.4
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcC
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKESG 229 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~g 229 (704)
..|.-|.|.||+|+||||+++.+++.++
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4567788999999999999999998765
No 311
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.17 E-value=0.081 Score=56.81 Aligned_cols=28 Identities=25% Similarity=0.253 Sum_probs=24.4
Q ss_pred CccCceEEEEcCCCChHHHHHHHHHHHc
Q 005285 201 VQFVRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
...+.-+.|.||+|+||||+++.+|+.+
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4566778999999999999999999864
No 312
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=93.16 E-value=0.22 Score=49.14 Aligned_cols=53 Identities=19% Similarity=0.142 Sum_probs=30.8
Q ss_pred CccccceecCcccHHHHHHHHHHhCCchhhhhcC---CccCceEEEEcCCCChHHHHH
Q 005285 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERG---VQFVRGVLLSGPPGTGKTLFA 221 (704)
Q Consensus 167 ~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g---~~~p~gvLL~GPPGTGKT~LA 221 (704)
..+|+++-..+.+.+.|.+. ....|..++... +...+.+++.+|+|+|||+.+
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEA--QYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAF 79 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHT--TCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHH
Confidence 35688875455444444431 133343343321 112367999999999999854
No 313
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=93.07 E-value=0.19 Score=49.38 Aligned_cols=57 Identities=16% Similarity=0.148 Sum_probs=32.1
Q ss_pred cCCCccccceecC-cccHHHHHHHHHHhCCchhhhhcCC---ccCceEEEEcCCCChHHHHHH
Q 005285 164 SDTKSMYKEVVLG-GDVWDLLDELMIYMGNPMQYYERGV---QFVRGVLLSGPPGTGKTLFAR 222 (704)
Q Consensus 164 ~~~~~~f~dVvG~-~~~k~~L~elv~~l~~p~~~~~~g~---~~p~gvLL~GPPGTGKT~LAr 222 (704)
.++..+|+|..+. +++.+.|.+. ....|..++...+ ...+.+++.+|+|+|||+.+-
T Consensus 15 p~p~~~f~~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 15 PKPTCRFKDAFQQYPDLLKSIIRV--GILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp CCCCCSHHHHHTTCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred CCChhhHhhhhccCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHH
Confidence 3556678885333 3333333322 2334444443221 124679999999999997543
No 314
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=93.05 E-value=0.38 Score=56.97 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=21.7
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHH
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e 227 (704)
....++|.||.|+||||+.|.++.-
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH
Confidence 3456899999999999999999864
No 315
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.94 E-value=0.065 Score=61.21 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=30.3
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcC----CCEEEEeCc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESG----LPFVFASGA 238 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g----~~~v~is~s 238 (704)
.+..|+|.|+||+||||+|++++..++ .+++.+++.
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D 434 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGD 434 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcH
Confidence 356789999999999999999999875 788877643
No 316
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.93 E-value=0.046 Score=57.25 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=23.5
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcC
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESG 229 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g 229 (704)
.+.-+.|.||+|+|||||++.+++.++
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345688999999999999999999765
No 317
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.90 E-value=0.066 Score=53.56 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=23.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcC
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESG 229 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g 229 (704)
|+-|.|.|++|+||||+++.++..++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45689999999999999999999983
No 318
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.73 E-value=0.11 Score=54.79 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=24.3
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcC
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKESG 229 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~g 229 (704)
..|.-+.|.||+|+||||+++.+++.++
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3466788999999999999999998765
No 319
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.68 E-value=0.069 Score=51.31 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=22.2
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
...-+.|.||+|+|||++++.++..+
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 34568999999999999999998763
No 320
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.64 E-value=0.031 Score=56.79 Aligned_cols=26 Identities=19% Similarity=0.372 Sum_probs=23.4
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
.+.-|.|.|++|+||||+++.++..+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45678899999999999999999987
No 321
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.60 E-value=0.12 Score=58.73 Aligned_cols=38 Identities=26% Similarity=0.273 Sum_probs=29.5
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcC----CCEEEEeCccc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESG----LPFVFASGAEF 240 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g----~~~v~is~s~~ 240 (704)
.+..+.|.|++|+||||+++++|+.++ ..+..+++..+
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 445688999999999999999999874 34555665544
No 322
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.54 E-value=0.069 Score=56.17 Aligned_cols=27 Identities=22% Similarity=0.139 Sum_probs=23.3
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHc
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
+.+.-+.|.||+|+|||||++.|++.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 445667899999999999999999865
No 323
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.29 E-value=0.12 Score=54.83 Aligned_cols=27 Identities=26% Similarity=0.208 Sum_probs=23.8
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHc
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
..|.-+.|.||+|+||||+++.+|+.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 457788999999999999999999864
No 324
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.15 E-value=0.24 Score=52.48 Aligned_cols=26 Identities=27% Similarity=0.294 Sum_probs=22.0
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
...-+.|.||||+|||||.+++++..
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 34567899999999999999998754
No 325
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.14 E-value=0.085 Score=55.29 Aligned_cols=26 Identities=35% Similarity=0.304 Sum_probs=23.1
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
.+.-+.|.||+|+||||+++.+|+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46678999999999999999999865
No 326
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.07 E-value=0.29 Score=61.34 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=21.8
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
+..-|-|+||+|+|||||++.+.+-.
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCc
Confidence 34558899999999999999998743
No 327
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=92.05 E-value=0.41 Score=47.54 Aligned_cols=56 Identities=18% Similarity=0.185 Sum_probs=31.5
Q ss_pred CCCccccceecCcccHHHHHHHHHHhCCchhhhhcC---CccCceEEEEcCCCChHHHHHH
Q 005285 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERG---VQFVRGVLLSGPPGTGKTLFAR 222 (704)
Q Consensus 165 ~~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g---~~~p~gvLL~GPPGTGKT~LAr 222 (704)
.+-.+|+++-..+.+.+.+.+. ....|..++..- +...+.+++.+|+|+|||+.+-
T Consensus 26 ~~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 26 KPVLNFYEANFPANVMDVIARQ--NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp CCCSSTTTTTCCHHHHHHHHTT--TCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHH
T ss_pred CccCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHH
Confidence 4456787764444443333321 133343333321 1124679999999999998643
No 328
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=91.99 E-value=0.55 Score=47.49 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=21.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
+..|+|.|.+|+|||+|+.++.+.-
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4569999999999999999998643
No 329
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=91.93 E-value=0.42 Score=47.38 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=21.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e 227 (704)
+..|+|.|++|+|||+|..++.+.
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHcCC
Confidence 456999999999999999999864
No 330
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=91.93 E-value=0.43 Score=56.24 Aligned_cols=24 Identities=38% Similarity=0.458 Sum_probs=21.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e 227 (704)
...++|.||.|+||||+.|.+++-
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 456899999999999999999863
No 331
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.86 E-value=0.099 Score=50.10 Aligned_cols=33 Identities=15% Similarity=0.112 Sum_probs=25.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEe
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKES---GLPFVFAS 236 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is 236 (704)
.+.+.|.|++|+|||+++..++..+ |..+..+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 3468899999999999999998764 55555444
No 332
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.82 E-value=0.1 Score=49.35 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=21.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcC
Q 005285 206 GVLLSGPPGTGKTLFARTLAKESG 229 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~g 229 (704)
-.+|+||.|+|||++++||+..++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 468999999999999999998765
No 333
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=91.63 E-value=0.051 Score=60.36 Aligned_cols=28 Identities=21% Similarity=0.403 Sum_probs=24.4
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcCC
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESGL 230 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g~ 230 (704)
.+..|+|.|.||+|||++++.+|..++.
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~ 65 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNF 65 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 3567999999999999999999998653
No 334
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.59 E-value=0.4 Score=50.75 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=22.1
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
....+.|.|+||+|||+++.+++..+
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999998754
No 335
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=91.57 E-value=0.91 Score=45.64 Aligned_cols=67 Identities=16% Similarity=0.028 Sum_probs=38.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHH---HcCCCEEEEeCccccchhh-hhHH------------HHHHHHHHHhhCCCeEEEE
Q 005285 205 RGVLLSGPPGTGKTLFARTLAK---ESGLPFVFASGAEFTDSEK-SGAA------------RINEMFSIARRNAPAFVFV 268 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~---e~g~~~v~is~s~~~~~~~-~g~~------------~vr~lF~~Ak~~~P~ILfI 268 (704)
.-.+++||.|+|||+.+-..+. ..|..++.+...--.. ++ ...+ ...++++.+ ....+|+|
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~R-yg~~i~sr~G~~~~a~~i~~~~di~~~~--~~~dvViI 96 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTR-YSSSFCTHDRNTMEALPACLLRDVAQEA--LGVAVIGI 96 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCC-C-----------CEEEEESSGGGGHHHH--TTCSEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCcc-chHHHHhhcCCeeEEEecCCHHHHHHHh--ccCCEEEE
Confidence 4457789999999977766654 4466766665321111 11 0000 112344444 33569999
Q ss_pred ccchhh
Q 005285 269 DEIDAI 274 (704)
Q Consensus 269 DEiDal 274 (704)
||+.-+
T Consensus 97 DEaQF~ 102 (234)
T 2orv_A 97 DEGQFF 102 (234)
T ss_dssp SSGGGC
T ss_pred Echhhh
Confidence 999977
No 336
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.56 E-value=0.18 Score=50.03 Aligned_cols=33 Identities=30% Similarity=0.369 Sum_probs=26.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEe
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKES---GLPFVFAS 236 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is 236 (704)
+.-|.|.|++|+||||+++.++..+ |.+++...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 3457788999999999999998865 56665443
No 337
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.54 E-value=0.072 Score=52.67 Aligned_cols=24 Identities=38% Similarity=0.425 Sum_probs=21.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e 227 (704)
..-+.|.||.|+|||||++++++.
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 345889999999999999999975
No 338
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.51 E-value=0.066 Score=53.45 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=22.0
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
...-+.|.||.|+|||||++.+++-.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34457899999999999999999854
No 339
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=91.51 E-value=0.28 Score=57.93 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=19.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e 227 (704)
...+++.||+|+|||+++..++.+
T Consensus 109 ~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 109 NQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 356999999999999987777554
No 340
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.44 E-value=0.084 Score=53.38 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=22.5
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHc
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
+. .-+.|.||.|+|||||.+.+++-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 44 568899999999999999999854
No 341
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.41 E-value=0.075 Score=53.48 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=22.2
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
...-+.|.||.|+|||||++.+++-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34458899999999999999999854
No 342
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=91.34 E-value=0.15 Score=54.87 Aligned_cols=20 Identities=30% Similarity=0.557 Sum_probs=16.3
Q ss_pred ceEEEEcCCCChHHHHHHHH
Q 005285 205 RGVLLSGPPGTGKTLFARTL 224 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LArai 224 (704)
+.+++.+|+|+|||+.+-..
T Consensus 37 ~~~lv~apTGsGKT~~~l~~ 56 (414)
T 3oiy_A 37 KSFTMVAPTGVGKTTFGMMT 56 (414)
T ss_dssp CCEECCSCSSSSHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHH
Confidence 57999999999999854444
No 343
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=91.34 E-value=0.13 Score=51.10 Aligned_cols=31 Identities=32% Similarity=0.398 Sum_probs=26.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcCCCEEEEe
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e~g~~~v~is 236 (704)
-.|-|+|..|||||++++.++. +|+|++..+
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 3588999999999999999998 899987443
No 344
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.33 E-value=0.077 Score=53.45 Aligned_cols=26 Identities=27% Similarity=0.213 Sum_probs=22.2
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
...-+.|.||.|+|||||++.+++..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568899999999999999998853
No 345
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=91.30 E-value=0.34 Score=60.50 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=23.0
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHc
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
++..-+-|.||+|+|||||++.+++..
T Consensus 414 ~~G~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 414 KSGQTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp CTTCEEEEECCSSSSHHHHHHHTTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345568899999999999999998865
No 346
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.28 E-value=0.25 Score=46.64 Aligned_cols=27 Identities=26% Similarity=0.594 Sum_probs=23.0
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHc
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
.....|++.|++|+|||+|+.++.+..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345579999999999999999998753
No 347
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=91.28 E-value=0.26 Score=52.54 Aligned_cols=25 Identities=44% Similarity=0.619 Sum_probs=21.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
..-|.|.|+||+|||||..++++..
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3457899999999999999998753
No 348
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.27 E-value=0.61 Score=44.09 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHc
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
-.|+|.|++|+|||+|++++.+..
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 459999999999999999998754
No 349
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=91.18 E-value=0.33 Score=53.82 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=19.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 005285 206 GVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e 227 (704)
.++|+||||+|||+|++.++..
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhh
Confidence 5899999999999999988764
No 350
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.11 E-value=0.11 Score=49.84 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e 227 (704)
.-+.|.|++|+|||+|.+++++.
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999999985
No 351
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.04 E-value=0.11 Score=49.73 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHc
Q 005285 206 GVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
-+.|.|++|+|||+|++.+++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999999854
No 352
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.00 E-value=1.6 Score=39.60 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=19.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 005285 206 GVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e 227 (704)
.|++.|++|+|||+|+.++...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999999764
No 353
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.98 E-value=0.13 Score=51.91 Aligned_cols=29 Identities=17% Similarity=0.362 Sum_probs=24.3
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc---CCC
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLP 231 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~---g~~ 231 (704)
.+.-|.|.|++|+||||+++.++..+ |.+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~ 57 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGID 57 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 35668899999999999999998765 556
No 354
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=90.89 E-value=0.71 Score=52.17 Aligned_cols=26 Identities=42% Similarity=0.471 Sum_probs=21.9
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
...-+-|.||.|+|||||++++++..
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34457899999999999999999853
No 355
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.81 E-value=0.091 Score=53.77 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=21.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
..-+.|.||.|+|||||++++++-.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3457899999999999999999854
No 356
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=90.80 E-value=0.19 Score=50.34 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=23.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc-------CCCEEEEe
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKES-------GLPFVFAS 236 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~-------g~~~v~is 236 (704)
..-|.|.||+|+||||+++.++..+ |.+++...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 3457888999999999999999876 67766543
No 357
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=90.79 E-value=0.51 Score=47.43 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=21.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e 227 (704)
+..|+|.|.||+|||+|..++.+.
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCcHHHHHHHHhCC
Confidence 456999999999999999999753
No 358
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.77 E-value=0.12 Score=53.10 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=21.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHc
Q 005285 206 GVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
.+.|.||+|+|||||.+++++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999865
No 359
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.76 E-value=0.091 Score=53.07 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=22.2
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
...-+.|.||.|+|||||++.+++..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34458899999999999999999854
No 360
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=90.75 E-value=0.9 Score=52.90 Aligned_cols=20 Identities=40% Similarity=0.506 Sum_probs=17.3
Q ss_pred cCceEEEEcCCCChHHHHHH
Q 005285 203 FVRGVLLSGPPGTGKTLFAR 222 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAr 222 (704)
..+.+++.||+|+|||+.+-
T Consensus 38 ~~~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 38 EGKNALISIPTASGKTLIAE 57 (720)
T ss_dssp GTCEEEEECCGGGCHHHHHH
T ss_pred CCCcEEEEcCCccHHHHHHH
Confidence 35789999999999998773
No 361
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=90.73 E-value=0.12 Score=58.23 Aligned_cols=27 Identities=7% Similarity=-0.031 Sum_probs=24.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCC
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESGL 230 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g~ 230 (704)
+..|.|.|.+|+||||+++++|..++.
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 457889999999999999999999874
No 362
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.67 E-value=0.14 Score=46.54 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=20.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 005285 206 GVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e 227 (704)
.|++.|++|+|||+|++++++.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
No 363
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=90.67 E-value=0.93 Score=48.28 Aligned_cols=58 Identities=19% Similarity=0.193 Sum_probs=33.9
Q ss_pred CCccccceecCcccHHHHHHHHHHhCCchhhhhcCC---ccCceEEEEcCCCChHHHHHHHHH
Q 005285 166 TKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGV---QFVRGVLLSGPPGTGKTLFARTLA 225 (704)
Q Consensus 166 ~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g~---~~p~gvLL~GPPGTGKT~LAraiA 225 (704)
...+|+++-..+.+.+.|... -+..|..++...+ ...+.+++.+|+|+|||+.+-..+
T Consensus 35 ~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~ 95 (410)
T 2j0s_A 35 VTPTFDTMGLREDLLRGIYAY--GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISV 95 (410)
T ss_dssp CCCSGGGGCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHH
T ss_pred CCCCHhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHH
Confidence 345788875555444444331 1334444443321 123679999999999997655433
No 364
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=90.67 E-value=0.13 Score=54.96 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=24.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCC
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESGLP 231 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g~~ 231 (704)
..-+.|.||+|+|||||++.+++.....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4568999999999999999999986543
No 365
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.64 E-value=0.092 Score=53.52 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=21.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
..-+.|.||.|+|||||.+.+++-.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3457899999999999999999865
No 366
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.60 E-value=0.11 Score=52.72 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=21.7
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHH
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e 227 (704)
...-+.|.||.|+|||||++.+++-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3445889999999999999999985
No 367
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.57 E-value=0.12 Score=53.16 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=21.8
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHH
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e 227 (704)
...-+.|.||.|+|||||++.+++-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3445889999999999999999985
No 368
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.53 E-value=0.16 Score=49.25 Aligned_cols=25 Identities=28% Similarity=0.571 Sum_probs=22.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
...|+|.|++|+|||+|+.++++..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4569999999999999999998854
No 369
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.51 E-value=0.089 Score=52.28 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=21.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
..-+.|.||.|+|||||++++++-.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3458899999999999999999854
No 370
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.46 E-value=0.098 Score=52.35 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=22.4
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
...-+.|.||.|+|||||.+.+++..
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34568899999999999999999864
No 371
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=90.45 E-value=0.26 Score=49.00 Aligned_cols=32 Identities=25% Similarity=0.179 Sum_probs=26.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCEEEE
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~i 235 (704)
++-|.|.|++|+||||+++.++..++.+...+
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~ 36 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQPNCKLL 36 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCSSEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccceEE
Confidence 45688899999999999999999988754433
No 372
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=90.45 E-value=0.14 Score=59.09 Aligned_cols=33 Identities=33% Similarity=0.538 Sum_probs=23.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHc----CCCEEEEeCc
Q 005285 206 GVLLSGPPGTGKTLFARTLAKES----GLPFVFASGA 238 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~----g~~~v~is~s 238 (704)
.+++.||||||||+++..++..+ +..++.+..+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~t 233 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPS 233 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESS
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 57899999999999888776543 4455555433
No 373
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.42 E-value=0.099 Score=53.01 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=22.3
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
...-+.|.||.|+|||||++.+++-.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568899999999999999999864
No 374
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.41 E-value=0.1 Score=53.25 Aligned_cols=26 Identities=27% Similarity=0.279 Sum_probs=22.4
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
...-+.|.||.|+|||||++.+++..
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 44568899999999999999999864
No 375
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.37 E-value=0.1 Score=52.64 Aligned_cols=25 Identities=32% Similarity=0.262 Sum_probs=21.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
..-+.|.||.|+|||||.+.+++-.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3457899999999999999999864
No 376
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.36 E-value=0.11 Score=53.41 Aligned_cols=26 Identities=35% Similarity=0.473 Sum_probs=22.1
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
...-+.|.||.|+|||||++.+++-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 34458899999999999999999864
No 377
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.31 E-value=0.15 Score=46.63 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=21.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e 227 (704)
.-.|++.|++|+|||+|++++.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346899999999999999999874
No 378
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.26 E-value=0.11 Score=49.80 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=21.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHc
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
+.+.|.||+|+|||||++.+++.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999999875
No 379
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.25 E-value=0.11 Score=53.48 Aligned_cols=26 Identities=31% Similarity=0.335 Sum_probs=22.4
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
...-+.|.||.|+|||||++.+++..
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34558899999999999999999864
No 380
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=90.17 E-value=0.12 Score=55.37 Aligned_cols=25 Identities=32% Similarity=0.380 Sum_probs=21.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
..-+.|.||+|+|||||.|+||+-.
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3457899999999999999999854
No 381
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.12 E-value=0.11 Score=52.87 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=22.2
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
...-+.|.||.|+|||||.+.+++..
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34457899999999999999999864
No 382
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=90.10 E-value=1.3 Score=51.57 Aligned_cols=22 Identities=41% Similarity=0.569 Sum_probs=18.3
Q ss_pred ccCceEEEEcCCCChHHHHHHH
Q 005285 202 QFVRGVLLSGPPGTGKTLFART 223 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAra 223 (704)
...+.+++.||+|+|||+.+-.
T Consensus 44 ~~~~~~lv~apTGsGKT~~~~l 65 (715)
T 2va8_A 44 LEGNRLLLTSPTGSGKTLIAEM 65 (715)
T ss_dssp TTTCCEEEECCTTSCHHHHHHH
T ss_pred cCCCcEEEEcCCCCcHHHHHHH
Confidence 3467899999999999998743
No 383
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.03 E-value=0.12 Score=53.04 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=22.1
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
...-+.|.||.|+|||||++.+++-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34457899999999999999999864
No 384
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=90.02 E-value=0.15 Score=58.48 Aligned_cols=23 Identities=43% Similarity=0.559 Sum_probs=19.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e 227 (704)
+.+++.||||||||+++.++...
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~ 187 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAA 187 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHH
Confidence 46899999999999998877543
No 385
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.01 E-value=0.12 Score=52.82 Aligned_cols=26 Identities=31% Similarity=0.235 Sum_probs=22.1
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
...-+.|.||.|+|||||++.+++-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34458899999999999999999854
No 386
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=89.98 E-value=0.38 Score=47.90 Aligned_cols=68 Identities=15% Similarity=0.116 Sum_probs=36.8
Q ss_pred eEEEEcCCCChHHH-HHHHH--HHHcCCCEEEEeCcccc--------chhhhh-----HHHHHHHHHHHhhCCCeEEEEc
Q 005285 206 GVLLSGPPGTGKTL-FARTL--AKESGLPFVFASGAEFT--------DSEKSG-----AARINEMFSIARRNAPAFVFVD 269 (704)
Q Consensus 206 gvLL~GPPGTGKT~-LArai--A~e~g~~~v~is~s~~~--------~~~~~g-----~~~vr~lF~~Ak~~~P~ILfID 269 (704)
-.+++||.|+|||+ |.+.+ +.+.|..++.+...--. +..+.. .....+++... .....+|+||
T Consensus 30 I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~~di~~~i-~~~~dvV~ID 108 (219)
T 3e2i_A 30 IECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMTHD-LTNVDVIGID 108 (219)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-----------CBTTBCCEEEEESSGGGGGGSC-CTTCSEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCHHHHHHHH-hcCCCEEEEe
Confidence 35788999999999 55554 23446666655432111 000100 01112333332 2346799999
Q ss_pred cchhh
Q 005285 270 EIDAI 274 (704)
Q Consensus 270 EiDal 274 (704)
|+.-+
T Consensus 109 EaQFf 113 (219)
T 3e2i_A 109 EVQFF 113 (219)
T ss_dssp CGGGS
T ss_pred chhcC
Confidence 99977
No 387
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.92 E-value=0.17 Score=45.98 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=20.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 005285 206 GVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e 227 (704)
.|++.|++|+|||+|+.++.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 388
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.90 E-value=0.11 Score=53.39 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=22.3
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
...-+.|.||.|+|||||++++++-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34558899999999999999999854
No 389
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=89.88 E-value=0.17 Score=46.02 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e 227 (704)
-.|++.|++|+|||+|+.++...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 390
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=89.83 E-value=0.23 Score=48.34 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=22.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcC
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESG 229 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g 229 (704)
...+++.|++|+|||+|+.+++..+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 45789999999999999999998753
No 391
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.81 E-value=0.12 Score=52.72 Aligned_cols=26 Identities=19% Similarity=0.111 Sum_probs=22.3
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
...-+.|.||.|+|||||.+.+++..
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34458899999999999999999864
No 392
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=89.80 E-value=0.65 Score=49.38 Aligned_cols=56 Identities=16% Similarity=0.141 Sum_probs=31.5
Q ss_pred CCccccceecCcccHHHHHHHHHHhCCchhhhhcC---CccCceEEEEcCCCChHHHHHHH
Q 005285 166 TKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERG---VQFVRGVLLSGPPGTGKTLFART 223 (704)
Q Consensus 166 ~~~~f~dVvG~~~~k~~L~elv~~l~~p~~~~~~g---~~~p~gvLL~GPPGTGKT~LAra 223 (704)
...+|+++...+...+.|... -...|..++... +...+.+++.+|+|+|||+.+-.
T Consensus 38 ~~~~f~~~~l~~~~~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~ 96 (414)
T 3eiq_A 38 IVDSFDDMNLSESLLRGIYAY--GFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAI 96 (414)
T ss_dssp CCCCGGGGCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHH
T ss_pred hhcCHhhCCCCHHHHHHHHHc--CCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHH
Confidence 345677765455444444331 133343333321 11245699999999999987443
No 393
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=89.79 E-value=0.12 Score=49.00 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=21.6
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHH
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e 227 (704)
....|++.|++|+|||+|..++.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999754
No 394
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=89.75 E-value=0.11 Score=57.13 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=20.2
Q ss_pred cCceEEEEcCCCChHHHHHHHHHH
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAK 226 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~ 226 (704)
..+-.++.|+||||||++...++.
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHCC
T ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Confidence 445678999999999999988875
No 395
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.73 E-value=0.12 Score=53.45 Aligned_cols=27 Identities=26% Similarity=0.194 Sum_probs=22.6
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHcC
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKESG 229 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~g 229 (704)
...-+.|.||.|+|||||++.+++...
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 344588999999999999999998653
No 396
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=89.69 E-value=0.15 Score=54.90 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=21.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
..-+.|.||+|+|||||.|++|+-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3457899999999999999999864
No 397
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=89.68 E-value=0.15 Score=54.80 Aligned_cols=25 Identities=40% Similarity=0.297 Sum_probs=21.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
..-+.|.||+|+|||||.|.+|+-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCC
Confidence 3457899999999999999999864
No 398
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=89.67 E-value=0.14 Score=54.88 Aligned_cols=25 Identities=40% Similarity=0.440 Sum_probs=21.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
..-+.|.||+|+|||||.|.||+-.
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3457899999999999999999864
No 399
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=89.61 E-value=0.19 Score=45.81 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e 227 (704)
..|++.|++|+|||+|++++.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999874
No 400
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.51 E-value=0.19 Score=45.95 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e 227 (704)
-.|++.|++|+|||+|+.++.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999864
No 401
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=89.51 E-value=0.15 Score=54.93 Aligned_cols=25 Identities=36% Similarity=0.418 Sum_probs=21.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
..-+.|.||+|+|||||.|.+|+-.
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3457899999999999999999864
No 402
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=89.49 E-value=0.15 Score=55.08 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=21.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
..-+-|.||+|+|||||.|.||+-.
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCC
Confidence 3457899999999999999999865
No 403
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=89.45 E-value=0.13 Score=54.94 Aligned_cols=25 Identities=36% Similarity=0.513 Sum_probs=21.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
..-+.|.||+|+|||||.|.+|+-.
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCccHHHHHHHHHcCC
Confidence 3457899999999999999999864
No 404
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.43 E-value=0.18 Score=46.73 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e 227 (704)
.-+.|.|+||+|||+|.+++++.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999863
No 405
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=89.43 E-value=0.19 Score=46.00 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHc
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
-.|++.|++|+|||+|++++.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998753
No 406
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=89.34 E-value=1.1 Score=54.47 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=19.8
Q ss_pred CceEEEEcCCCChHHHHHHHHH
Q 005285 204 VRGVLLSGPPGTGKTLFARTLA 225 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA 225 (704)
...++|.||.|+||||+.|.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 4678999999999999999994
No 407
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=89.31 E-value=0.2 Score=45.97 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e 227 (704)
..|++.|++|+|||+|+.++.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 408
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.31 E-value=0.16 Score=48.13 Aligned_cols=21 Identities=33% Similarity=0.619 Sum_probs=19.4
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 005285 206 GVLLSGPPGTGKTLFARTLAK 226 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~ 226 (704)
-|+|.|++|+|||+|++.+++
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999986
No 409
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=89.28 E-value=0.16 Score=54.88 Aligned_cols=25 Identities=36% Similarity=0.429 Sum_probs=21.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
..-+.|.||+|+|||||.|.||+-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCC
Confidence 3457899999999999999999854
No 410
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=89.28 E-value=0.28 Score=55.54 Aligned_cols=35 Identities=31% Similarity=0.357 Sum_probs=28.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc---CCCEEEEeCc
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGA 238 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~---g~~~v~is~s 238 (704)
+..|+|.|+||+|||++|+.++..+ |.++..+++.
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D 409 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGD 409 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECch
Confidence 5678999999999999999999865 4566666543
No 411
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=89.26 E-value=0.29 Score=56.20 Aligned_cols=26 Identities=15% Similarity=0.282 Sum_probs=22.2
Q ss_pred CccCceEEEEcCCCChHHHHHHHHHHH
Q 005285 201 VQFVRGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAraiA~e 227 (704)
+..|. +.|.||+|+|||||.+++++.
T Consensus 43 l~lp~-iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 43 LALPA-IAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp CCCCC-EECCCCTTSCHHHHHHHHHSC
T ss_pred ccCCe-EEEECCCCChHHHHHHHHhCC
Confidence 34455 889999999999999999875
No 412
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=89.24 E-value=0.2 Score=46.39 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e 227 (704)
...|++.|++|+|||+|..++.+.
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 346899999999999999999864
No 413
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=89.22 E-value=0.2 Score=45.93 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=21.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e 227 (704)
.-.|++.|++|+|||+|++++.+.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346899999999999999999865
No 414
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=89.10 E-value=0.2 Score=46.25 Aligned_cols=23 Identities=43% Similarity=0.609 Sum_probs=20.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e 227 (704)
-.|++.|+||+|||+|++++.+.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 45999999999999999999753
No 415
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=89.08 E-value=0.42 Score=47.80 Aligned_cols=35 Identities=17% Similarity=0.285 Sum_probs=27.2
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHc--CCCEEEEe
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKES--GLPFVFAS 236 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~--g~~~v~is 236 (704)
..+..+++.|.+|+|||+++..+|..+ |..+..++
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 345668899999999999999998664 55565555
No 416
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=89.04 E-value=0.22 Score=46.11 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=21.2
Q ss_pred cCceEEEEcCCCChHHHHHHHHHH
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAK 226 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~ 226 (704)
.+..|++.|++|+|||+|+.++.+
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 355699999999999999999976
No 417
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=89.02 E-value=0.15 Score=52.37 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=22.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
..-+.|.||.|+|||||.+.+++..
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458899999999999999999875
No 418
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=88.99 E-value=0.22 Score=45.53 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=21.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e 227 (704)
+..|++.|++|+|||+|+.++.+.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 346899999999999999999863
No 419
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=88.96 E-value=0.27 Score=45.11 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=21.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e 227 (704)
+..|++.|++|+|||+|+.++...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 456999999999999999999763
No 420
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=88.96 E-value=0.22 Score=46.20 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=21.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e 227 (704)
...|++.|++|+|||+|+.++.+.
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 456999999999999999999874
No 421
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=88.88 E-value=0.19 Score=47.31 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e 227 (704)
.-|.|.|++|+|||+|.+++++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999873
No 422
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=88.83 E-value=0.23 Score=45.34 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e 227 (704)
-.|++.|++|+|||+|.+++.+.
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999874
No 423
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=88.82 E-value=1.9 Score=46.05 Aligned_cols=33 Identities=30% Similarity=0.402 Sum_probs=25.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHc----CCCEEEEeCc
Q 005285 206 GVLLSGPPGTGKTLFARTLAKES----GLPFVFASGA 238 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~----g~~~v~is~s 238 (704)
++++.+|+|+|||+.+-+++... +.+++.+...
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~ 61 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPT 61 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 79999999999999888876654 6666666554
No 424
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=88.82 E-value=0.19 Score=46.04 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e 227 (704)
-.|++.|++|+|||+|+.++.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999863
No 425
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=88.70 E-value=0.25 Score=47.24 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=21.4
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHH
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e 227 (704)
....|+|.|++|+|||+|+.++.+.
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 4567999999999999999999864
No 426
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=88.70 E-value=0.23 Score=46.51 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=21.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e 227 (704)
+..|+|.|++|+|||+|+.++.+.
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456999999999999999999873
No 427
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=88.66 E-value=0.22 Score=45.68 Aligned_cols=21 Identities=38% Similarity=0.612 Sum_probs=19.0
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 005285 206 GVLLSGPPGTGKTLFARTLAK 226 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~ 226 (704)
-|++.|+||+|||+|+.++.+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999964
No 428
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=88.63 E-value=0.13 Score=55.00 Aligned_cols=25 Identities=36% Similarity=0.501 Sum_probs=21.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
..-+.|.||+|+|||||.|.+|+-.
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3457899999999999999999854
No 429
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=88.60 E-value=0.21 Score=45.74 Aligned_cols=21 Identities=48% Similarity=0.782 Sum_probs=19.0
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 005285 206 GVLLSGPPGTGKTLFARTLAK 226 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~ 226 (704)
-|+|.|+||+|||+|++++.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 489999999999999999964
No 430
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=88.53 E-value=0.64 Score=53.99 Aligned_cols=18 Identities=44% Similarity=0.748 Sum_probs=16.1
Q ss_pred ceEEEEcCCCChHHHHHH
Q 005285 205 RGVLLSGPPGTGKTLFAR 222 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAr 222 (704)
+.+++.||+|+|||+.+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (702)
T 2p6r_A 41 KNLLLAMPTAAGKTLLAE 58 (702)
T ss_dssp SCEEEECSSHHHHHHHHH
T ss_pred CcEEEEcCCccHHHHHHH
Confidence 579999999999999874
No 431
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=88.51 E-value=0.24 Score=45.81 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e 227 (704)
..|++.|++|+|||+|+.++...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999999863
No 432
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=88.49 E-value=0.28 Score=49.05 Aligned_cols=32 Identities=28% Similarity=0.229 Sum_probs=25.0
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc----CCCEEE
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES----GLPFVF 234 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~----g~~~v~ 234 (704)
.+.-|.|.|++|+|||++++.++..+ |.+++.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 34567888999999999999999865 445554
No 433
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=88.48 E-value=1.1 Score=45.18 Aligned_cols=18 Identities=39% Similarity=0.521 Sum_probs=15.4
Q ss_pred ceEEEEcCCCChHHHHHH
Q 005285 205 RGVLLSGPPGTGKTLFAR 222 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAr 222 (704)
+.+++.+|+|+|||+.+-
T Consensus 92 ~~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp CCCEECCCTTSCHHHHHH
T ss_pred CcEEEEccCCCCchHHHH
Confidence 569999999999998644
No 434
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=88.44 E-value=1 Score=56.29 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=21.9
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
+..-+-|.||+|+|||+|++.+++..
T Consensus 1058 ~Ge~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A 1058 KGQTLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp SSSEEEEECSSSTTHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 34558899999999999999998743
No 435
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=88.43 E-value=0.64 Score=52.18 Aligned_cols=20 Identities=35% Similarity=0.504 Sum_probs=16.1
Q ss_pred ceEEEEcCCCChHHHHHHHH
Q 005285 205 RGVLLSGPPGTGKTLFARTL 224 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LArai 224 (704)
+.+|+.+|+|+|||+.+..-
T Consensus 41 ~d~lv~apTGsGKTl~~~lp 60 (523)
T 1oyw_A 41 RDCLVVMPTGGGKSLCYQIP 60 (523)
T ss_dssp CCEEEECSCHHHHHHHHHHH
T ss_pred CCEEEECCCCcHHHHHHHHH
Confidence 46999999999999855433
No 436
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=88.42 E-value=0.23 Score=58.84 Aligned_cols=31 Identities=35% Similarity=0.578 Sum_probs=22.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHc----CCCEEEEe
Q 005285 206 GVLLSGPPGTGKTLFARTLAKES----GLPFVFAS 236 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~----g~~~v~is 236 (704)
..++.||||||||+++..++..+ +..++.+.
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a 407 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCA 407 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEE
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEc
Confidence 57899999999999888776543 34454443
No 437
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=88.41 E-value=0.22 Score=46.14 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHH
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAK 226 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~ 226 (704)
.-.|++.|++|+|||+|++++.+
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHG
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 34689999999999999999975
No 438
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=88.37 E-value=0.2 Score=54.38 Aligned_cols=26 Identities=23% Similarity=0.233 Sum_probs=22.3
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
...-+.|.||+|+|||||.++||+-.
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCC
Confidence 44568899999999999999999853
No 439
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=88.37 E-value=0.25 Score=45.61 Aligned_cols=24 Identities=17% Similarity=0.387 Sum_probs=21.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e 227 (704)
...|++.|++|+|||+|++++.+.
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 356999999999999999999874
No 440
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=88.35 E-value=0.18 Score=52.50 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=21.9
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
...-+.|.||.|+|||||++.+++..
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34458899999999999999999853
No 441
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=88.30 E-value=0.63 Score=47.16 Aligned_cols=22 Identities=36% Similarity=0.533 Sum_probs=20.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 005285 206 GVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e 227 (704)
.|.|.|.||+|||+|..++.+.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5889999999999999999864
No 442
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=88.22 E-value=0.26 Score=46.10 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e 227 (704)
-.|++.|++|+|||+|+.++.+.
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999874
No 443
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=88.21 E-value=0.25 Score=45.71 Aligned_cols=23 Identities=17% Similarity=0.394 Sum_probs=20.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e 227 (704)
..|++.|++|+|||+|++++.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999875
No 444
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=88.17 E-value=0.26 Score=46.43 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=20.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e 227 (704)
..|++.|++|+|||+|+.+++..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999875
No 445
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=88.14 E-value=0.26 Score=46.46 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e 227 (704)
...|++.|++|+|||+|++++.+.
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 345899999999999999999874
No 446
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.10 E-value=0.28 Score=48.71 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=21.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e 227 (704)
+.-+.|.||.|+||||+++.+++.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 445778899999999999999987
No 447
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=88.06 E-value=0.27 Score=45.78 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e 227 (704)
..|++.|++|+|||+|++++...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 46999999999999999999874
No 448
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=88.03 E-value=0.32 Score=51.22 Aligned_cols=29 Identities=41% Similarity=0.549 Sum_probs=24.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCEE
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFV 233 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g~~~v 233 (704)
.+|++|.|++|+|||++|.++... |..++
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv 172 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR-GHRLV 172 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc-CCcee
Confidence 468999999999999999999875 54443
No 449
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=88.02 E-value=0.27 Score=45.68 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=21.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e 227 (704)
+..|++.|++|+|||+|++++.+.
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346899999999999999999864
No 450
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=88.00 E-value=0.25 Score=46.35 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e 227 (704)
.-|.|.|+||+|||+|.+++++.
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999874
No 451
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=87.99 E-value=0.32 Score=45.77 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e 227 (704)
+-.|++.|++|+|||+|+.++.+.
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456999999999999999999875
No 452
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=87.98 E-value=0.27 Score=46.51 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=21.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e 227 (704)
...|+|.|++|+|||+|+.++.+.
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 346999999999999999999874
No 453
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=87.93 E-value=0.45 Score=48.09 Aligned_cols=27 Identities=22% Similarity=0.164 Sum_probs=24.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCCE
Q 005285 206 GVLLSGPPGTGKTLFARTLAKESGLPF 232 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~g~~~ 232 (704)
-|.|+|++|+|||++++.++..+|.++
T Consensus 3 ~i~ltG~~~sGK~tv~~~l~~~~g~~~ 29 (241)
T 1dek_A 3 LIFLSGVKRSGKDTTADFIMSNYSAVK 29 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 477999999999999999999888775
No 454
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=87.91 E-value=0.27 Score=46.25 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=21.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
..-|+|.|++|+|||+|++.+.+..
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhc
Confidence 3458999999999999999887753
No 455
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=87.91 E-value=0.27 Score=45.99 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=21.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e 227 (704)
...|++.|++|+|||+|++++.+.
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 346899999999999999999864
No 456
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=87.84 E-value=0.29 Score=51.48 Aligned_cols=30 Identities=40% Similarity=0.442 Sum_probs=24.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCCEEE
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g~~~v~ 234 (704)
.+||||.|++|+|||++|.++.. .|..++.
T Consensus 147 g~gvli~G~sG~GKStlal~l~~-~G~~lv~ 176 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLIN-KNHLFVG 176 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT-TTCEEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH-cCCEEEe
Confidence 57999999999999999988864 4655543
No 457
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=87.81 E-value=0.13 Score=49.56 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=21.1
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHH
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e 227 (704)
...-+.|.|++|+|||+|.+++++.
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3445899999999999999999754
No 458
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=87.81 E-value=0.51 Score=50.71 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=21.7
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHH
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e 227 (704)
...++++.||+|+|||++++.++..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999864
No 459
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=87.67 E-value=0.33 Score=46.22 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=21.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e 227 (704)
...|++.|++|+|||+|++++...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456999999999999999999874
No 460
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=87.66 E-value=0.26 Score=45.60 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=20.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHH
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAK 226 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~ 226 (704)
...|++.|++|+|||+|+.++.+
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999964
No 461
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=87.60 E-value=0.33 Score=47.32 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=21.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHc
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
+.-++|.|.+|+|||+|+..++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3568888999999999999998875
No 462
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=87.53 E-value=0.29 Score=54.25 Aligned_cols=26 Identities=35% Similarity=0.364 Sum_probs=22.3
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHHc
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
...-+.|.||.|+|||||+|.+++-.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 34458999999999999999999853
No 463
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=87.48 E-value=0.33 Score=45.19 Aligned_cols=23 Identities=17% Similarity=0.237 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e 227 (704)
-.|++.|++|+|||+|++++...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999999864
No 464
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=87.44 E-value=2.1 Score=45.39 Aligned_cols=22 Identities=14% Similarity=0.348 Sum_probs=20.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 005285 206 GVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e 227 (704)
-|.+.|++|+|||+|..++.+.
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6889999999999999999873
No 465
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=87.44 E-value=0.31 Score=45.20 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=21.6
Q ss_pred cCceEEEEcCCCChHHHHHHHHHHH
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~e 227 (704)
.+..|++.|++|+|||+|+.++.+.
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3456999999999999999999864
No 466
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=87.37 E-value=0.31 Score=45.47 Aligned_cols=24 Identities=17% Similarity=0.350 Sum_probs=21.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e 227 (704)
...|+|.|++|+|||+|+.++...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999864
No 467
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=87.29 E-value=0.32 Score=45.94 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e 227 (704)
..|+|.|++|+|||+|+.++.+.
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999874
No 468
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=87.27 E-value=0.44 Score=50.76 Aligned_cols=28 Identities=11% Similarity=0.168 Sum_probs=23.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHcCCC
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKESGLP 231 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e~g~~ 231 (704)
..-+.|.||+|+|||+|.+.+++.....
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 3458899999999999999999987544
No 469
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=87.26 E-value=0.34 Score=44.93 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=19.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHc
Q 005285 206 GVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
-.+|+||.|+|||++..|+.--+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999997543
No 470
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=87.25 E-value=0.5 Score=46.48 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=28.2
Q ss_pred ccCceEEEEcCCCChHHHHHHHHHHHcCCC-EEEEeCcc
Q 005285 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLP-FVFASGAE 239 (704)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAraiA~e~g~~-~v~is~s~ 239 (704)
.++.-|+|+|.||+||+++|+.+...+|.. +..++.++
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD 47 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSG 47 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccH
Confidence 466778999999999999999998877532 33344444
No 471
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=87.20 E-value=3.8 Score=45.04 Aligned_cols=34 Identities=21% Similarity=0.425 Sum_probs=24.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHc--------CCCEEEEeCc
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKES--------GLPFVFASGA 238 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e~--------g~~~v~is~s 238 (704)
+.+++.+|+|+|||+.+-..+.+. +..++.+...
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~ 61 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQ 61 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSS
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 469999999999998866665443 5556666544
No 472
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=87.19 E-value=0.46 Score=49.75 Aligned_cols=23 Identities=39% Similarity=0.527 Sum_probs=20.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHc
Q 005285 206 GVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
-++|.|+.|+||||+.+.+++..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 57899999999999999999754
No 473
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=87.12 E-value=0.83 Score=46.80 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e 227 (704)
.-|.|.|+||+|||+|..++.+.
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 35899999999999999999864
No 474
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=87.10 E-value=0.33 Score=45.81 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e 227 (704)
+..|+|.|++|+|||+|++++.+.
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346999999999999999999874
No 475
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=87.09 E-value=0.35 Score=46.05 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e 227 (704)
.-|++.|++|+|||+|.+++.+.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999873
No 476
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=87.08 E-value=0.3 Score=45.77 Aligned_cols=22 Identities=18% Similarity=0.430 Sum_probs=19.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 005285 206 GVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e 227 (704)
.|++.|++|+|||+|+.++.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4899999999999999999763
No 477
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=87.05 E-value=0.36 Score=47.78 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=21.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHc
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
+-|.|.|++|+||||.++.++..+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 457889999999999999998865
No 478
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=86.95 E-value=0.42 Score=45.55 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=20.8
Q ss_pred cCceEEEEcCCCChHHHHHHHHHH
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAK 226 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~ 226 (704)
....|++.|++|+|||+|+.++..
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 345699999999999999999964
No 479
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=86.92 E-value=0.44 Score=51.66 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=21.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e 227 (704)
..-++|.||||+|||+|++.+|+.
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHH
Confidence 446999999999999999999875
No 480
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=86.92 E-value=0.38 Score=50.04 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=21.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHcC
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKESG 229 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e~g 229 (704)
.-+.|.||+|+|||+|.+++++...
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CeEEEECCCCCcHHHHHHHhccccc
Confidence 3578999999999999999987543
No 481
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=86.87 E-value=0.3 Score=57.99 Aligned_cols=33 Identities=30% Similarity=0.470 Sum_probs=23.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHH----cCCCEEEEeCc
Q 005285 206 GVLLSGPPGTGKTLFARTLAKE----SGLPFVFASGA 238 (704)
Q Consensus 206 gvLL~GPPGTGKT~LAraiA~e----~g~~~v~is~s 238 (704)
.+|+.||||||||+++..+... .+..++.+..+
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~t 413 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPS 413 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCc
Confidence 4789999999999887766543 34555555433
No 482
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.86 E-value=0.37 Score=44.92 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=21.0
Q ss_pred cCceEEEEcCCCChHHHHHHHHHH
Q 005285 203 FVRGVLLSGPPGTGKTLFARTLAK 226 (704)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAraiA~ 226 (704)
.+..|++.|++|+|||+|..++..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 456799999999999999999873
No 483
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=86.81 E-value=0.35 Score=46.05 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e 227 (704)
..|+|.|++|+|||+|+.++.+.
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 484
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=86.80 E-value=0.35 Score=45.49 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=21.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e 227 (704)
...|+|.|++|+|||+|+.++.+.
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 346999999999999999999874
No 485
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=86.79 E-value=0.28 Score=46.07 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e 227 (704)
.-|++.|++|+|||+|+.++.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45999999999999999999764
No 486
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=86.77 E-value=0.35 Score=45.84 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e 227 (704)
--|+|.|++|+|||+|++.+.+.
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 35899999999999999999864
No 487
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=86.72 E-value=0.31 Score=49.62 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e 227 (704)
..|.|.|+||+|||+|..++.+.
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999764
No 488
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=86.69 E-value=0.35 Score=46.12 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=21.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e 227 (704)
...|++.|++|+|||+|+.++.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456999999999999999999875
No 489
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=86.66 E-value=1.6 Score=49.37 Aligned_cols=56 Identities=13% Similarity=0.147 Sum_probs=30.4
Q ss_pred CCCccccceecCcccHHHHHHHHHH--hCCchhhhhcCCc-----cCceEEEEcCCCChHHHH
Q 005285 165 DTKSMYKEVVLGGDVWDLLDELMIY--MGNPMQYYERGVQ-----FVRGVLLSGPPGTGKTLF 220 (704)
Q Consensus 165 ~~~~~f~dVvG~~~~k~~L~elv~~--l~~p~~~~~~g~~-----~p~gvLL~GPPGTGKT~L 220 (704)
....+|+++.........+.+.+.. ...|..++..-++ ..+.+++.+|+|+|||+.
T Consensus 14 ~~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 14 SKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFA 76 (579)
T ss_dssp CCCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHH
T ss_pred CCCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHH
Confidence 4456777775332222333333322 2233333332211 356899999999999984
No 490
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=86.65 E-value=0.54 Score=48.92 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHc
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKES 228 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e~ 228 (704)
.-+.|.||+|+|||||.++++ ..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 357899999999999999999 54
No 491
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=86.65 E-value=0.34 Score=52.91 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e 227 (704)
.-+.|.||+|+|||||.+++++.
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCcHHHHHHHHhCC
Confidence 35779999999999999999984
No 492
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=86.65 E-value=0.35 Score=45.94 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e 227 (704)
...|++.|++|+|||+|+.++.+.
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 346999999999999999999864
No 493
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=86.62 E-value=0.36 Score=45.76 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=20.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e 227 (704)
--|+|.|++|+|||+|++.+...
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999988764
No 494
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=86.58 E-value=0.43 Score=44.28 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=21.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e 227 (704)
...|++.|++|+|||+|++++...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456999999999999999999864
No 495
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=86.57 E-value=0.36 Score=44.98 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=20.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e 227 (704)
...|+|.|++|+|||+|+.++...
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 356899999999999999999853
No 496
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=86.53 E-value=0.37 Score=45.57 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=21.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e 227 (704)
...|++.|++|+|||+|+.++.+.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 345899999999999999999864
No 497
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=86.52 E-value=0.37 Score=45.68 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=21.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e 227 (704)
.-.|+|.|++|+|||+|++++.+.
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 346999999999999999999875
No 498
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=86.46 E-value=0.37 Score=45.45 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e 227 (704)
..|+|.|++|+|||+|+.++...
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999763
No 499
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=86.38 E-value=0.28 Score=45.57 Aligned_cols=23 Identities=13% Similarity=0.169 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 005285 205 RGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 205 ~gvLL~GPPGTGKT~LAraiA~e 227 (704)
--|++.|++|+|||+|++.+.+.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999874
No 500
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=86.34 E-value=0.37 Score=46.18 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=21.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 005285 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (704)
Q Consensus 204 p~gvLL~GPPGTGKT~LAraiA~e 227 (704)
...|+|.|++|+|||+|+.++.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999864
Done!