Query 005286
Match_columns 704
No_of_seqs 272 out of 1850
Neff 3.8
Searched_HMMs 46136
Date Thu Mar 28 21:03:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005286.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005286hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.6 1.3E-15 2.7E-20 162.3 4.1 70 634-703 204-277 (348)
2 PF13639 zf-RING_2: Ring finge 99.4 2.1E-14 4.6E-19 110.0 1.2 44 657-700 1-44 (44)
3 COG5540 RING-finger-containing 99.2 5.6E-12 1.2E-16 132.0 2.5 49 655-703 322-371 (374)
4 PF12678 zf-rbx1: RING-H2 zinc 99.2 1.8E-11 3.9E-16 104.3 3.6 46 655-700 18-73 (73)
5 PHA02929 N1R/p28-like protein; 99.1 3E-11 6.5E-16 123.8 4.6 69 635-703 148-226 (238)
6 COG5243 HRD1 HRD ubiquitin lig 99.0 1.9E-10 4E-15 123.3 3.3 51 653-703 284-344 (491)
7 cd00162 RING RING-finger (Real 98.9 9.3E-10 2E-14 81.0 3.5 44 658-703 1-45 (45)
8 PLN03208 E3 ubiquitin-protein 98.8 2.5E-09 5.3E-14 106.9 4.8 47 655-704 17-79 (193)
9 PF13920 zf-C3HC4_3: Zinc fing 98.8 1.8E-09 3.8E-14 85.1 2.9 46 656-704 2-48 (50)
10 KOG0317 Predicted E3 ubiquitin 98.8 2.4E-09 5.2E-14 111.9 2.4 45 656-703 239-283 (293)
11 PF13923 zf-C3HC4_2: Zinc fing 98.8 3.3E-09 7.2E-14 79.8 2.3 39 659-699 1-39 (39)
12 KOG0823 Predicted E3 ubiquitin 98.8 4E-09 8.7E-14 107.4 3.6 49 653-704 44-95 (230)
13 KOG0802 E3 ubiquitin ligase [P 98.8 2.5E-09 5.5E-14 120.1 1.9 48 655-702 290-339 (543)
14 smart00504 Ubox Modified RING 98.7 2.7E-08 6E-13 80.3 4.6 45 657-704 2-46 (63)
15 smart00184 RING Ring finger. E 98.6 2.9E-08 6.3E-13 70.5 3.5 38 659-699 1-39 (39)
16 KOG0320 Predicted E3 ubiquitin 98.6 1.5E-08 3.1E-13 100.2 2.5 48 656-704 131-178 (187)
17 PHA02926 zinc finger-like prot 98.6 2E-08 4.4E-13 102.3 3.3 49 655-703 169-229 (242)
18 PF12861 zf-Apc11: Anaphase-pr 98.6 2.6E-08 5.7E-13 88.3 2.7 48 656-703 21-81 (85)
19 PF00097 zf-C3HC4: Zinc finger 98.5 4E-08 8.6E-13 73.9 1.8 39 659-699 1-41 (41)
20 PF14634 zf-RING_5: zinc-RING 98.5 7E-08 1.5E-12 74.7 3.2 44 658-701 1-44 (44)
21 PF15227 zf-C3HC4_4: zinc fing 98.5 5.4E-08 1.2E-12 75.3 2.4 38 659-699 1-42 (42)
22 TIGR00599 rad18 DNA repair pro 98.5 9.8E-08 2.1E-12 104.4 3.6 46 655-703 25-70 (397)
23 COG5194 APC11 Component of SCF 98.3 7.1E-07 1.5E-11 78.7 3.6 46 657-702 32-79 (88)
24 KOG2164 Predicted E3 ubiquitin 98.2 4.7E-07 1E-11 100.8 1.1 46 656-704 186-236 (513)
25 PF13445 zf-RING_UBOX: RING-ty 98.1 1.4E-06 3.1E-11 68.3 2.6 38 659-697 1-43 (43)
26 KOG1734 Predicted RING-contain 98.1 8E-07 1.7E-11 92.8 1.0 49 655-703 223-280 (328)
27 COG5574 PEX10 RING-finger-cont 98.1 1.3E-06 2.7E-11 91.1 2.3 45 656-703 215-261 (271)
28 KOG0828 Predicted E3 ubiquitin 98.1 1.1E-06 2.3E-11 97.6 1.6 48 656-703 571-633 (636)
29 smart00744 RINGv The RING-vari 98.1 2.9E-06 6.4E-11 67.9 3.3 42 658-700 1-49 (49)
30 KOG1493 Anaphase-promoting com 98.1 1.2E-06 2.6E-11 76.7 1.2 49 655-703 19-80 (84)
31 PF04564 U-box: U-box domain; 98.0 2.7E-06 5.8E-11 72.4 2.3 46 656-704 4-50 (73)
32 COG5219 Uncharacterized conser 98.0 1.5E-06 3.3E-11 101.7 -0.4 47 656-704 1469-1523(1525)
33 KOG0287 Postreplication repair 97.9 2.6E-06 5.6E-11 91.3 1.1 46 656-704 23-68 (442)
34 KOG2930 SCF ubiquitin ligase, 97.8 9.9E-06 2.1E-10 74.5 2.2 27 676-702 80-106 (114)
35 COG5432 RAD18 RING-finger-cont 97.8 9.7E-06 2.1E-10 85.6 2.2 44 656-702 25-68 (391)
36 KOG4445 Uncharacterized conser 97.8 7.7E-06 1.7E-10 86.7 1.3 49 655-703 114-185 (368)
37 KOG0804 Cytoplasmic Zn-finger 97.8 9.1E-06 2E-10 89.7 1.6 46 656-703 175-221 (493)
38 PF11793 FANCL_C: FANCL C-term 97.7 1.4E-05 3E-10 68.2 1.1 49 656-704 2-66 (70)
39 KOG1039 Predicted E3 ubiquitin 97.6 3E-05 6.5E-10 83.9 2.0 50 654-703 159-220 (344)
40 KOG0825 PHD Zn-finger protein 97.4 1.9E-05 4.1E-10 91.5 -1.5 48 656-703 123-170 (1134)
41 KOG4265 Predicted E3 ubiquitin 97.3 0.00013 2.8E-09 79.0 3.2 46 655-703 289-335 (349)
42 KOG0311 Predicted E3 ubiquitin 97.2 3.4E-05 7.5E-10 83.3 -2.5 46 656-703 43-89 (381)
43 KOG0978 E3 ubiquitin ligase in 97.0 0.00019 4E-09 83.6 0.5 45 656-703 643-688 (698)
44 KOG4172 Predicted E3 ubiquitin 96.9 0.00015 3.3E-09 60.3 -0.7 45 656-703 7-53 (62)
45 KOG4159 Predicted E3 ubiquitin 96.7 0.00064 1.4E-08 75.1 1.9 46 655-703 83-128 (398)
46 KOG1428 Inhibitor of type V ad 96.6 0.0011 2.3E-08 81.1 2.8 51 654-704 3484-3544(3738)
47 KOG1941 Acetylcholine receptor 96.5 0.00062 1.4E-08 74.7 0.1 46 656-701 365-413 (518)
48 KOG1785 Tyrosine kinase negati 96.5 0.00083 1.8E-08 73.9 0.9 44 657-703 370-415 (563)
49 PF14835 zf-RING_6: zf-RING of 96.5 0.00078 1.7E-08 57.6 0.3 43 657-703 8-50 (65)
50 KOG0297 TNF receptor-associate 96.4 0.0016 3.4E-08 71.6 2.5 47 655-703 20-66 (391)
51 PF10367 Vps39_2: Vacuolar sor 96.3 0.0048 1E-07 54.2 4.4 31 656-687 78-108 (109)
52 KOG2660 Locus-specific chromos 96.3 0.0011 2.4E-08 71.3 0.1 48 654-703 13-60 (331)
53 PF11789 zf-Nse: Zinc-finger o 96.2 0.0019 4.1E-08 53.6 1.1 42 655-698 10-53 (57)
54 KOG2879 Predicted E3 ubiquitin 96.2 0.0042 9.1E-08 65.8 3.9 48 654-703 237-286 (298)
55 KOG3970 Predicted E3 ubiquitin 95.9 0.0052 1.1E-07 63.7 2.7 51 652-703 46-104 (299)
56 PF05883 Baculo_RING: Baculovi 95.8 0.0034 7.3E-08 60.4 0.8 35 656-690 26-66 (134)
57 KOG1814 Predicted E3 ubiquitin 95.7 0.0053 1.1E-07 68.0 1.9 46 656-701 184-237 (445)
58 PHA03096 p28-like protein; Pro 95.3 0.0081 1.8E-07 64.0 1.7 45 657-701 179-231 (284)
59 KOG3039 Uncharacterized conser 95.1 0.017 3.7E-07 60.7 3.2 48 656-703 221-269 (303)
60 COG5152 Uncharacterized conser 95.0 0.01 2.2E-07 60.7 1.3 44 656-702 196-239 (259)
61 PF12906 RINGv: RING-variant d 94.9 0.014 3.1E-07 46.5 1.6 40 659-699 1-47 (47)
62 KOG1571 Predicted E3 ubiquitin 94.8 0.017 3.7E-07 63.1 2.5 46 652-703 301-346 (355)
63 KOG0801 Predicted E3 ubiquitin 94.8 0.011 2.3E-07 59.0 0.7 29 656-684 177-205 (205)
64 PF15295 CCDC50_N: Coiled-coil 94.5 0.025 5.5E-07 54.4 2.7 42 478-519 80-123 (132)
65 KOG4692 Predicted E3 ubiquitin 94.5 0.02 4.3E-07 62.7 2.2 47 654-703 420-466 (489)
66 KOG1002 Nucleotide excision re 94.3 0.014 3.1E-07 66.4 0.4 47 655-704 535-586 (791)
67 PF04641 Rtf2: Rtf2 RING-finge 94.1 0.044 9.6E-07 57.1 3.5 48 655-703 112-160 (260)
68 KOG0827 Predicted E3 ubiquitin 93.9 0.003 6.5E-08 69.4 -5.4 48 656-703 196-244 (465)
69 KOG0826 Predicted E3 ubiquitin 93.7 0.072 1.6E-06 57.9 4.4 59 642-703 286-345 (357)
70 COG5222 Uncharacterized conser 93.6 0.033 7.1E-07 60.0 1.6 42 656-700 274-317 (427)
71 KOG1813 Predicted E3 ubiquitin 93.6 0.027 5.9E-07 60.4 0.9 45 656-703 241-285 (313)
72 KOG1952 Transcription factor N 93.3 0.037 8.1E-07 65.9 1.7 46 655-700 190-243 (950)
73 PF14570 zf-RING_4: RING/Ubox 93.0 0.054 1.2E-06 44.1 1.6 44 659-703 1-47 (48)
74 COG5236 Uncharacterized conser 92.8 0.075 1.6E-06 58.3 2.8 47 653-702 58-106 (493)
75 KOG1001 Helicase-like transcri 92.6 0.044 9.6E-07 64.5 0.9 43 657-703 455-499 (674)
76 PHA02825 LAP/PHD finger-like p 92.5 0.1 2.3E-06 51.8 3.2 46 655-702 7-57 (162)
77 KOG4275 Predicted E3 ubiquitin 92.1 0.03 6.5E-07 60.1 -1.2 41 656-703 300-341 (350)
78 KOG2932 E3 ubiquitin ligase in 90.8 0.095 2.1E-06 56.8 0.9 41 658-702 92-132 (389)
79 KOG1940 Zn-finger protein [Gen 89.9 0.13 2.9E-06 54.9 1.1 46 656-701 158-204 (276)
80 KOG2114 Vacuolar assembly/sort 89.8 0.16 3.4E-06 60.9 1.7 41 657-702 841-881 (933)
81 PF08746 zf-RING-like: RING-li 89.7 0.11 2.5E-06 40.8 0.3 41 659-699 1-43 (43)
82 KOG3268 Predicted E3 ubiquitin 89.6 0.2 4.3E-06 50.9 2.0 51 654-704 163-228 (234)
83 KOG2034 Vacuolar sorting prote 89.4 0.16 3.5E-06 60.9 1.5 35 655-690 816-850 (911)
84 KOG0298 DEAD box-containing he 88.7 0.1 2.2E-06 64.6 -0.8 42 657-701 1154-1196(1394)
85 PF14447 Prok-RING_4: Prokaryo 88.3 0.23 5E-06 41.6 1.2 43 656-703 7-49 (55)
86 KOG3002 Zn finger protein [Gen 87.0 0.4 8.7E-06 51.7 2.4 42 656-704 48-91 (299)
87 KOG1100 Predicted E3 ubiquitin 85.5 0.4 8.7E-06 49.1 1.5 38 659-703 161-199 (207)
88 COG5175 MOT2 Transcriptional r 85.4 0.52 1.1E-05 51.9 2.3 51 652-702 10-62 (480)
89 KOG1609 Protein involved in mR 84.4 0.44 9.6E-06 49.3 1.2 47 656-702 78-132 (323)
90 PF10272 Tmpp129: Putative tra 83.9 1.3 2.7E-05 49.2 4.4 27 677-703 311-350 (358)
91 KOG0309 Conserved WD40 repeat- 83.5 0.54 1.2E-05 56.0 1.5 28 671-698 1042-1069(1081)
92 KOG0825 PHD Zn-finger protein 82.8 0.56 1.2E-05 56.1 1.3 47 656-702 96-152 (1134)
93 KOG2817 Predicted E3 ubiquitin 82.4 1 2.2E-05 50.3 3.0 47 656-702 334-383 (394)
94 KOG3053 Uncharacterized conser 81.8 0.64 1.4E-05 49.5 1.2 48 655-702 19-80 (293)
95 KOG1812 Predicted E3 ubiquitin 78.1 0.85 1.8E-05 50.6 0.7 38 655-692 145-183 (384)
96 KOG1829 Uncharacterized conser 76.2 0.98 2.1E-05 52.7 0.5 41 656-699 511-556 (580)
97 PF14446 Prok-RING_1: Prokaryo 75.6 3.6 7.9E-05 34.5 3.5 39 656-698 5-44 (54)
98 KOG4362 Transcriptional regula 70.6 1 2.2E-05 53.4 -1.1 45 656-703 21-68 (684)
99 KOG2066 Vacuolar assembly/sort 68.0 2.3 4.9E-05 51.2 1.0 43 656-699 784-830 (846)
100 KOG1815 Predicted E3 ubiquitin 66.8 3.4 7.3E-05 46.5 2.0 37 654-692 68-104 (444)
101 PF03854 zf-P11: P-11 zinc fin 66.3 2.6 5.5E-05 34.8 0.7 41 658-703 4-45 (50)
102 PF02891 zf-MIZ: MIZ/SP-RING z 63.9 1.8 4E-05 35.0 -0.5 42 658-702 4-50 (50)
103 COG5183 SSM4 Protein involved 63.2 4.7 0.0001 48.8 2.4 48 656-703 12-65 (1175)
104 KOG0802 E3 ubiquitin ligase [P 61.4 2.8 6E-05 48.3 0.1 42 655-703 478-519 (543)
105 PF13901 DUF4206: Domain of un 60.9 5.7 0.00012 40.4 2.2 40 656-700 152-196 (202)
106 PF05290 Baculo_IE-1: Baculovi 60.3 6.3 0.00014 38.7 2.3 46 655-703 79-131 (140)
107 KOG1812 Predicted E3 ubiquitin 56.2 5.5 0.00012 44.4 1.3 44 656-699 306-351 (384)
108 KOG3899 Uncharacterized conser 55.1 6 0.00013 43.2 1.3 27 677-703 325-364 (381)
109 smart00132 LIM Zinc-binding do 52.7 14 0.00031 26.4 2.6 36 659-703 2-37 (39)
110 KOG4718 Non-SMC (structural ma 50.9 6.4 0.00014 41.3 0.7 42 656-699 181-222 (235)
111 COG5109 Uncharacterized conser 47.4 12 0.00026 41.4 2.0 45 656-700 336-383 (396)
112 smart00249 PHD PHD zinc finger 45.5 12 0.00026 27.6 1.3 31 658-688 1-31 (47)
113 KOG3039 Uncharacterized conser 45.3 13 0.00029 39.9 2.0 33 656-691 43-75 (303)
114 PF04710 Pellino: Pellino; In 40.9 9 0.0002 43.3 0.0 29 671-702 303-337 (416)
115 KOG3005 GIY-YIG type nuclease 39.9 12 0.00025 40.5 0.6 48 656-703 182-242 (276)
116 KOG0269 WD40 repeat-containing 38.9 19 0.00041 43.6 2.2 40 658-698 781-820 (839)
117 KOG0824 Predicted E3 ubiquitin 33.9 13 0.00028 40.8 -0.2 46 656-703 105-150 (324)
118 PF01363 FYVE: FYVE zinc finge 32.7 17 0.00037 30.2 0.4 38 653-690 6-44 (69)
119 KOG2807 RNA polymerase II tran 32.4 32 0.00069 38.4 2.4 47 656-702 330-376 (378)
120 PF00628 PHD: PHD-finger; Int 32.3 22 0.00048 27.8 0.9 43 658-700 1-49 (51)
121 KOG3842 Adaptor protein Pellin 31.8 32 0.00069 38.2 2.3 48 656-703 341-413 (429)
122 PF15295 CCDC50_N: Coiled-coil 29.6 44 0.00096 32.8 2.7 18 475-492 103-120 (132)
123 KOG2068 MOT2 transcription fac 28.3 43 0.00094 37.2 2.6 47 656-703 249-297 (327)
124 KOG3579 Predicted E3 ubiquitin 26.8 34 0.00073 37.6 1.5 37 656-693 268-306 (352)
125 PF04710 Pellino: Pellino; In 26.2 22 0.00048 40.3 0.0 48 656-703 328-400 (416)
126 smart00064 FYVE Protein presen 26.0 30 0.00064 28.7 0.7 38 654-691 8-46 (68)
127 PF06844 DUF1244: Protein of u 25.8 36 0.00079 30.0 1.2 12 680-691 11-22 (68)
128 KOG3113 Uncharacterized conser 25.5 53 0.0012 35.6 2.6 46 656-703 111-157 (293)
129 KOG4185 Predicted E3 ubiquitin 24.4 15 0.00032 38.7 -1.7 46 656-701 207-264 (296)
130 PF14311 DUF4379: Domain of un 22.7 49 0.0011 26.9 1.4 22 677-699 34-55 (55)
131 PF04423 Rad50_zn_hook: Rad50 22.2 25 0.00054 28.5 -0.4 20 685-704 8-31 (54)
132 KOG1729 FYVE finger containing 20.6 16 0.00035 39.6 -2.3 37 656-692 214-250 (288)
133 KOG4218 Nuclear hormone recept 20.4 37 0.0008 38.2 0.3 48 653-701 12-75 (475)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.3e-15 Score=162.26 Aligned_cols=70 Identities=44% Similarity=0.963 Sum_probs=61.6
Q ss_pred CCCCCHHHHhcCCcceeecCCCCC---cccccCCCCCCCCccEEeccCCccchhhHHHHHhcC-CCCCccCCCC
Q 005286 634 QSGASANQINSLPLSTVQTDNFEE---ACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRR-PSCPVCKSSI 703 (704)
Q Consensus 634 ~~GaS~e~I~sLP~sti~~d~~ee---tCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k-~SCPVCR~eI 703 (704)
...+.+..+.++|..++.....+. +|+||||+|..|+++++|||+|.||..||++||.+. ..||+||.++
T Consensus 204 ~~r~~k~~l~~~p~~~f~~~~~~~~~~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di 277 (348)
T KOG4628|consen 204 RNRLIKRLLKKLPVRTFTKGDDEDATDTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDI 277 (348)
T ss_pred hhhhHHHHHhhCCcEEeccccccCCCceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcC
Confidence 347788899999999988665443 999999999999999999999999999999999987 5599999875
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.44 E-value=2.1e-14 Score=110.04 Aligned_cols=44 Identities=48% Similarity=1.190 Sum_probs=40.6
Q ss_pred CcccccCCCCCCCCccEEeccCCccchhhHHHHHhcCCCCCccC
Q 005286 657 EACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCK 700 (704)
Q Consensus 657 etCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR 700 (704)
++|+||+++|..++.+..|+|+|+||.+||.+||+.+.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 46999999999899999999999999999999999999999997
No 3
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=5.6e-12 Score=132.02 Aligned_cols=49 Identities=45% Similarity=1.004 Sum_probs=46.2
Q ss_pred CCCcccccCCCCCCCCccEEeccCCccchhhHHHHHh-cCCCCCccCCCC
Q 005286 655 FEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLS-RRPSCPVCKSSI 703 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk-~k~SCPVCR~eI 703 (704)
...+|+|||++|..++.+++|||.|.||..||.+||. .+..||+||.+|
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~i 371 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAI 371 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCC
Confidence 4678999999999999999999999999999999998 789999999986
No 4
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.16 E-value=1.8e-11 Score=104.31 Aligned_cols=46 Identities=37% Similarity=0.859 Sum_probs=37.2
Q ss_pred CCCcccccCCCCCCC----------CccEEeccCCccchhhHHHHHhcCCCCCccC
Q 005286 655 FEEACAICLDNPSIG----------DSIRHLPCLHKFHKDCIDPWLSRRPSCPVCK 700 (704)
Q Consensus 655 ~eetCsICLEeF~~G----------d~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR 700 (704)
.++.|+||++.|... -.+...+|+|.||..||.+||+.+.+||+||
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 456799999999322 2455668999999999999999999999998
No 5
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.14 E-value=3e-11 Score=123.81 Aligned_cols=69 Identities=23% Similarity=0.596 Sum_probs=53.4
Q ss_pred CCCCHHHHhcCCcceee-----cCCCCCcccccCCCCCCCC----ccEE-eccCCccchhhHHHHHhcCCCCCccCCCC
Q 005286 635 SGASANQINSLPLSTVQ-----TDNFEEACAICLDNPSIGD----SIRH-LPCLHKFHKDCIDPWLSRRPSCPVCKSSI 703 (704)
Q Consensus 635 ~GaS~e~I~sLP~sti~-----~d~~eetCsICLEeF~~Gd----~Vrv-LPCgHvFH~dCI~~WLk~k~SCPVCR~eI 703 (704)
.+.+...+..+|..... ....+.+|+||++.+.... .+.+ ++|+|.||..||.+|++.+.+||+||..+
T Consensus 148 ~~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~ 226 (238)
T PHA02929 148 GKNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPF 226 (238)
T ss_pred cchhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEe
Confidence 45578888888876532 1233688999999986543 1234 46999999999999999999999999876
No 6
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=1.9e-10 Score=123.28 Aligned_cols=51 Identities=33% Similarity=0.948 Sum_probs=43.6
Q ss_pred CCCCCcccccCCC-CCCCC---------ccEEeccCCccchhhHHHHHhcCCCCCccCCCC
Q 005286 653 DNFEEACAICLDN-PSIGD---------SIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSI 703 (704)
Q Consensus 653 d~~eetCsICLEe-F~~Gd---------~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~eI 703 (704)
.+.+..|.|||++ |..+. +...|||||+||.+|++.|+.++.+||+||.+|
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence 3457899999999 44442 357899999999999999999999999999985
No 7
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.91 E-value=9.3e-10 Score=81.01 Aligned_cols=44 Identities=41% Similarity=1.107 Sum_probs=37.3
Q ss_pred cccccCCCCCCCCccEEeccCCccchhhHHHHHhc-CCCCCccCCCC
Q 005286 658 ACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSR-RPSCPVCKSSI 703 (704)
Q Consensus 658 tCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~-k~SCPVCR~eI 703 (704)
+|+||++.+ .+.+..++|+|.||..|+..|+.. ...||+||..+
T Consensus 1 ~C~iC~~~~--~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEF--REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhh--hCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 599999998 344555569999999999999997 78899999865
No 8
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.84 E-value=2.5e-09 Score=106.90 Aligned_cols=47 Identities=38% Similarity=0.737 Sum_probs=39.6
Q ss_pred CCCcccccCCCCCCCCccEEeccCCccchhhHHHHHhc----------------CCCCCccCCCCC
Q 005286 655 FEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSR----------------RPSCPVCKSSIT 704 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~----------------k~SCPVCR~eIS 704 (704)
.+.+|+||++.+... ++++|||.||..||.+||.. ...||+||..|+
T Consensus 17 ~~~~CpICld~~~dP---VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 17 GDFDCNICLDQVRDP---VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred CccCCccCCCcCCCc---EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 467899999998655 67889999999999999852 357999999875
No 9
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.83 E-value=1.8e-09 Score=85.13 Aligned_cols=46 Identities=39% Similarity=1.019 Sum_probs=39.4
Q ss_pred CCcccccCCCCCCCCccEEeccCCc-cchhhHHHHHhcCCCCCccCCCCC
Q 005286 656 EEACAICLDNPSIGDSIRHLPCLHK-FHKDCIDPWLSRRPSCPVCKSSIT 704 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCgHv-FH~dCI~~WLk~k~SCPVCR~eIS 704 (704)
+..|.||++.+.. +..+||||. |+..|+.+|+.....||+||.+|+
T Consensus 2 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCc---eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 4679999998553 678899999 999999999999999999999885
No 10
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=2.4e-09 Score=111.91 Aligned_cols=45 Identities=36% Similarity=0.882 Sum_probs=40.4
Q ss_pred CCcccccCCCCCCCCccEEeccCCccchhhHHHHHhcCCCCCccCCCC
Q 005286 656 EEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSI 703 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~eI 703 (704)
...|.||||..... ..+||||+||..||..|+..+..||+||.++
T Consensus 239 ~~kC~LCLe~~~~p---SaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~ 283 (293)
T KOG0317|consen 239 TRKCSLCLENRSNP---SATPCGHIFCWSCILEWCSEKAECPLCREKF 283 (293)
T ss_pred CCceEEEecCCCCC---CcCcCcchHHHHHHHHHHccccCCCcccccC
Confidence 46799999987655 6889999999999999999999999999875
No 11
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.77 E-value=3.3e-09 Score=79.85 Aligned_cols=39 Identities=46% Similarity=1.125 Sum_probs=33.8
Q ss_pred ccccCCCCCCCCccEEeccCCccchhhHHHHHhcCCCCCcc
Q 005286 659 CAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVC 699 (704)
Q Consensus 659 CsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k~SCPVC 699 (704)
|+||++.+.. .+..++|||.|+..||.+|++.+..||+|
T Consensus 1 C~iC~~~~~~--~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC--cCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 8999998875 56788999999999999999999999998
No 12
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=4e-09 Score=107.44 Aligned_cols=49 Identities=35% Similarity=0.654 Sum_probs=40.0
Q ss_pred CCCCCcccccCCCCCCCCccEEeccCCccchhhHHHHHhc---CCCCCccCCCCC
Q 005286 653 DNFEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSR---RPSCPVCKSSIT 704 (704)
Q Consensus 653 d~~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~---k~SCPVCR~eIS 704 (704)
+....+|.|||+.-++. +++.|||+||+.||.+||.. +..|||||..|+
T Consensus 44 ~~~~FdCNICLd~akdP---VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDP---VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVS 95 (230)
T ss_pred CCCceeeeeeccccCCC---EEeecccceehHHHHHHHhhcCCCeeCCccccccc
Confidence 34578899999985544 56669999999999999984 567999999875
No 13
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=2.5e-09 Score=120.13 Aligned_cols=48 Identities=38% Similarity=1.034 Sum_probs=43.8
Q ss_pred CCCcccccCCCCCCCCc--cEEeccCCccchhhHHHHHhcCCCCCccCCC
Q 005286 655 FEEACAICLDNPSIGDS--IRHLPCLHKFHKDCIDPWLSRRPSCPVCKSS 702 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~--VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~e 702 (704)
.+..|+||+|++..+.. ...|||+|+||..|+..||+++++||+||..
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~ 339 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTV 339 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhh
Confidence 37889999999988765 7899999999999999999999999999984
No 14
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.65 E-value=2.7e-08 Score=80.27 Aligned_cols=45 Identities=24% Similarity=0.408 Sum_probs=40.4
Q ss_pred CcccccCCCCCCCCccEEeccCCccchhhHHHHHhcCCCCCccCCCCC
Q 005286 657 EACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSIT 704 (704)
Q Consensus 657 etCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~eIS 704 (704)
..|+||++.+... +.++|||+|++.||.+|+..+..||+|+..++
T Consensus 2 ~~Cpi~~~~~~~P---v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMKDP---VILPSGQTYERRAIEKWLLSHGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCCCC---EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCC
Confidence 4699999998875 67899999999999999999999999998764
No 15
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.62 E-value=2.9e-08 Score=70.55 Aligned_cols=38 Identities=42% Similarity=1.096 Sum_probs=33.4
Q ss_pred ccccCCCCCCCCccEEeccCCccchhhHHHHHh-cCCCCCcc
Q 005286 659 CAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLS-RRPSCPVC 699 (704)
Q Consensus 659 CsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk-~k~SCPVC 699 (704)
|+||++. ......++|+|.||..||..|+. ....||+|
T Consensus 1 C~iC~~~---~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEE---LKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccC---CCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 8899988 34568889999999999999998 67789998
No 16
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=1.5e-08 Score=100.23 Aligned_cols=48 Identities=35% Similarity=0.673 Sum_probs=40.9
Q ss_pred CCcccccCCCCCCCCccEEeccCCccchhhHHHHHhcCCCCCccCCCCC
Q 005286 656 EEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSIT 704 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~eIS 704 (704)
-..|+|||+.|..... .-..|||+||+.||+..|+....||+|++.|+
T Consensus 131 ~~~CPiCl~~~sek~~-vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt 178 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVP-VSTKCGHVFCSQCIKDALKNTNKCPTCRKKIT 178 (187)
T ss_pred ccCCCceecchhhccc-cccccchhHHHHHHHHHHHhCCCCCCcccccc
Confidence 3679999999875433 34679999999999999999999999998875
No 17
>PHA02926 zinc finger-like protein; Provisional
Probab=98.61 E-value=2e-08 Score=102.30 Aligned_cols=49 Identities=33% Similarity=0.781 Sum_probs=37.7
Q ss_pred CCCcccccCCCCCCC----C-ccEEe-ccCCccchhhHHHHHhcC------CCCCccCCCC
Q 005286 655 FEEACAICLDNPSIG----D-SIRHL-PCLHKFHKDCIDPWLSRR------PSCPVCKSSI 703 (704)
Q Consensus 655 ~eetCsICLEeF~~G----d-~VrvL-PCgHvFH~dCI~~WLk~k------~SCPVCR~eI 703 (704)
.+.+|+||||..... + ....| +|+|.||..||..|...+ .+||+||..+
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f 229 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRF 229 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCccee
Confidence 468899999986322 1 23455 599999999999999753 4699999865
No 18
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.58 E-value=2.6e-08 Score=88.28 Aligned_cols=48 Identities=35% Similarity=0.834 Sum_probs=37.6
Q ss_pred CCcccccCCCCCC--------CC--ccEEeccCCccchhhHHHHHhc---CCCCCccCCCC
Q 005286 656 EEACAICLDNPSI--------GD--SIRHLPCLHKFHKDCIDPWLSR---RPSCPVCKSSI 703 (704)
Q Consensus 656 eetCsICLEeF~~--------Gd--~VrvLPCgHvFH~dCI~~WLk~---k~SCPVCR~eI 703 (704)
++.|.||...|.. |+ .+..-.|+|.||..||.+||.. +..||+||++.
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w 81 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPW 81 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCee
Confidence 7889999988862 22 2333359999999999999984 57899999863
No 19
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.51 E-value=4e-08 Score=73.90 Aligned_cols=39 Identities=41% Similarity=1.042 Sum_probs=34.3
Q ss_pred ccccCCCCCCCCccEEeccCCccchhhHHHHHh--cCCCCCcc
Q 005286 659 CAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLS--RRPSCPVC 699 (704)
Q Consensus 659 CsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk--~k~SCPVC 699 (704)
|+||++.+... +..++|+|.|+..||.+|+. ....||+|
T Consensus 1 C~iC~~~~~~~--~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDP--VILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSE--EEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCC--CEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 89999998765 35889999999999999999 56789998
No 20
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.51 E-value=7e-08 Score=74.66 Aligned_cols=44 Identities=27% Similarity=0.707 Sum_probs=39.0
Q ss_pred cccccCCCCCCCCccEEeccCCccchhhHHHHHhcCCCCCccCC
Q 005286 658 ACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKS 701 (704)
Q Consensus 658 tCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~ 701 (704)
.|.||++.|........|+|||+|+..||..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 49999999966667888899999999999999977789999985
No 21
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.50 E-value=5.4e-08 Score=75.34 Aligned_cols=38 Identities=39% Similarity=0.849 Sum_probs=30.0
Q ss_pred ccccCCCCCCCCccEEeccCCccchhhHHHHHhcC----CCCCcc
Q 005286 659 CAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRR----PSCPVC 699 (704)
Q Consensus 659 CsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k----~SCPVC 699 (704)
|+||++-|... +.|+|||.|+..||..|.+.. ..||+|
T Consensus 1 CpiC~~~~~~P---v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP---VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE---EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc---cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999877 789999999999999999753 479998
No 22
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.45 E-value=9.8e-08 Score=104.40 Aligned_cols=46 Identities=33% Similarity=0.671 Sum_probs=40.7
Q ss_pred CCCcccccCCCCCCCCccEEeccCCccchhhHHHHHhcCCCCCccCCCC
Q 005286 655 FEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSI 703 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~eI 703 (704)
....|+||++.|... ++++|+|.||..||..||.....||+||..+
T Consensus 25 ~~l~C~IC~d~~~~P---vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~ 70 (397)
T TIGR00599 25 TSLRCHICKDFFDVP---VLTSCSHTFCSLCIRRCLSNQPKCPLCRAED 70 (397)
T ss_pred cccCCCcCchhhhCc---cCCCCCCchhHHHHHHHHhCCCCCCCCCCcc
Confidence 467899999998755 4789999999999999999888999999875
No 23
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.26 E-value=7.1e-07 Score=78.67 Aligned_cols=46 Identities=30% Similarity=0.719 Sum_probs=34.2
Q ss_pred CcccccCCCCCCCCccEEe--ccCCccchhhHHHHHhcCCCCCccCCC
Q 005286 657 EACAICLDNPSIGDSIRHL--PCLHKFHKDCIDPWLSRRPSCPVCKSS 702 (704)
Q Consensus 657 etCsICLEeF~~Gd~VrvL--PCgHvFH~dCI~~WLk~k~SCPVCR~e 702 (704)
.+|+-|......++...+. -|.|.||..||.+||..++.||+||++
T Consensus 32 ~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~ 79 (88)
T COG5194 32 GTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQT 79 (88)
T ss_pred CcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCce
Confidence 4455555545555543222 499999999999999999999999975
No 24
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=4.7e-07 Score=100.78 Aligned_cols=46 Identities=39% Similarity=0.831 Sum_probs=37.5
Q ss_pred CCcccccCCCCCCCCccEEeccCCccchhhHHHHHhc-----CCCCCccCCCCC
Q 005286 656 EEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSR-----RPSCPVCKSSIT 704 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~-----k~SCPVCR~eIS 704 (704)
+..|+|||+..... ..+.|||+||..||.+++.. -..||+||..|+
T Consensus 186 ~~~CPICL~~~~~p---~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~ 236 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP---VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTIT 236 (513)
T ss_pred CCcCCcccCCCCcc---cccccCceeeHHHHHHHHhhhcccCCccCCchhhhcc
Confidence 67899999997765 44459999999999998864 357999998763
No 25
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.13 E-value=1.4e-06 Score=68.30 Aligned_cols=38 Identities=39% Similarity=0.811 Sum_probs=22.9
Q ss_pred ccccCCCCCC-CCccEEeccCCccchhhHHHHHhc----CCCCC
Q 005286 659 CAICLDNPSI-GDSIRHLPCLHKFHKDCIDPWLSR----RPSCP 697 (704)
Q Consensus 659 CsICLEeF~~-Gd~VrvLPCgHvFH~dCI~~WLk~----k~SCP 697 (704)
|+||+| |.. .+.-++|+|||+|+.+||.+|++. ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 865 345688999999999999999984 34687
No 26
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=8e-07 Score=92.83 Aligned_cols=49 Identities=31% Similarity=0.800 Sum_probs=41.9
Q ss_pred CCCcccccCCCCCCCC-------ccEEeccCCccchhhHHHHHh--cCCCCCccCCCC
Q 005286 655 FEEACAICLDNPSIGD-------SIRHLPCLHKFHKDCIDPWLS--RRPSCPVCKSSI 703 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd-------~VrvLPCgHvFH~dCI~~WLk--~k~SCPVCR~eI 703 (704)
.+..|+||-..+.... +..+|.|+|+||..||+-|.. .+.+||.|+..|
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekV 280 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKV 280 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHh
Confidence 4678999999887655 678999999999999999965 688999998754
No 27
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=1.3e-06 Score=91.05 Aligned_cols=45 Identities=29% Similarity=0.907 Sum_probs=38.8
Q ss_pred CCcccccCCCCCCCCccEEeccCCccchhhHHH-HHhcCCC-CCccCCCC
Q 005286 656 EEACAICLDNPSIGDSIRHLPCLHKFHKDCIDP-WLSRRPS-CPVCKSSI 703 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~-WLk~k~S-CPVCR~eI 703 (704)
+..|.||++..... ..+||||+||..||.. |-+.+.- ||+||..+
T Consensus 215 d~kC~lC~e~~~~p---s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~ 261 (271)
T COG5574 215 DYKCFLCLEEPEVP---SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKV 261 (271)
T ss_pred ccceeeeecccCCc---ccccccchhhHHHHHHHHHhhccccCchhhhhc
Confidence 67899999986544 7889999999999999 9887766 99999865
No 28
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=1.1e-06 Score=97.57 Aligned_cols=48 Identities=31% Similarity=0.932 Sum_probs=38.0
Q ss_pred CCcccccCCCCCC---CCc-----------cEEeccCCccchhhHHHHHh-cCCCCCccCCCC
Q 005286 656 EEACAICLDNPSI---GDS-----------IRHLPCLHKFHKDCIDPWLS-RRPSCPVCKSSI 703 (704)
Q Consensus 656 eetCsICLEeF~~---Gd~-----------VrvLPCgHvFH~dCI~~WLk-~k~SCPVCR~eI 703 (704)
...|+|||..... +.. -...||.|+||..|+.+|+. .+-.||+||.+|
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pL 633 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPL 633 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCC
Confidence 4679999987532 222 23459999999999999999 677999999986
No 29
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.07 E-value=2.9e-06 Score=67.89 Aligned_cols=42 Identities=29% Similarity=0.837 Sum_probs=33.3
Q ss_pred cccccCCCCCCCCccEEeccC-----CccchhhHHHHHhc--CCCCCccC
Q 005286 658 ACAICLDNPSIGDSIRHLPCL-----HKFHKDCIDPWLSR--RPSCPVCK 700 (704)
Q Consensus 658 tCsICLEeF~~Gd~VrvLPCg-----HvFH~dCI~~WLk~--k~SCPVCR 700 (704)
.|-||++ +...+...++||. |.||..|+.+||.. +.+||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899999 4444455588984 99999999999964 55899995
No 30
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=1.2e-06 Score=76.68 Aligned_cols=49 Identities=37% Similarity=0.795 Sum_probs=37.4
Q ss_pred CCCcccccCCCCCCCCccEEec----------cCCccchhhHHHHHhc---CCCCCccCCCC
Q 005286 655 FEEACAICLDNPSIGDSIRHLP----------CLHKFHKDCIDPWLSR---RPSCPVCKSSI 703 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvLP----------CgHvFH~dCI~~WLk~---k~SCPVCR~eI 703 (704)
.+++|.||.-.|..--.-.++| |.|.||..||.+||.. +..||+||++.
T Consensus 19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTW 80 (84)
T ss_pred CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence 3568999999886533322332 9999999999999974 56799999863
No 31
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.01 E-value=2.7e-06 Score=72.43 Aligned_cols=46 Identities=22% Similarity=0.405 Sum_probs=37.0
Q ss_pred CCcccccCCCCCCCCccEEeccCCccchhhHHHHHhc-CCCCCccCCCCC
Q 005286 656 EEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSR-RPSCPVCKSSIT 704 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~-k~SCPVCR~eIS 704 (704)
...|+||.+-|.+. +++||||.|.+.||..||.. ...||+|+..|+
T Consensus 4 ~f~CpIt~~lM~dP---Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~ 50 (73)
T PF04564_consen 4 EFLCPITGELMRDP---VILPSGHTYERSAIERWLEQNGGTDPFTRQPLS 50 (73)
T ss_dssp GGB-TTTSSB-SSE---EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-S
T ss_pred ccCCcCcCcHhhCc---eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCC
Confidence 46799999998876 78999999999999999998 899999998774
No 32
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.96 E-value=1.5e-06 Score=101.67 Aligned_cols=47 Identities=47% Similarity=1.094 Sum_probs=36.7
Q ss_pred CCcccccCCCCCCCCccEEec------cCCccchhhHHHHHhc--CCCCCccCCCCC
Q 005286 656 EEACAICLDNPSIGDSIRHLP------CLHKFHKDCIDPWLSR--RPSCPVCKSSIT 704 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLP------CgHvFH~dCI~~WLk~--k~SCPVCR~eIS 704 (704)
-++|+||...+..-+ +.|| |.|.||..|+.+|++. +..||+||.+|+
T Consensus 1469 ~eECaICYsvL~~vd--r~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1469 HEECAICYSVLDMVD--RSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cchhhHHHHHHHHHh--ccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 478999997654111 2333 9999999999999984 678999999875
No 33
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.94 E-value=2.6e-06 Score=91.31 Aligned_cols=46 Identities=37% Similarity=0.803 Sum_probs=41.7
Q ss_pred CCcccccCCCCCCCCccEEeccCCccchhhHHHHHhcCCCCCccCCCCC
Q 005286 656 EEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSIT 704 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~eIS 704 (704)
-..|.||.+-|... .++||+|.||.-||..+|..+..||.|+.+++
T Consensus 23 lLRC~IC~eyf~ip---~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~ 68 (442)
T KOG0287|consen 23 LLRCGICFEYFNIP---MITPCSHTFCSLCIRKFLSYKPQCPTCCVTVT 68 (442)
T ss_pred HHHHhHHHHHhcCc---eeccccchHHHHHHHHHhccCCCCCceecccc
Confidence 35699999999887 78899999999999999999999999998763
No 34
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=9.9e-06 Score=74.53 Aligned_cols=27 Identities=41% Similarity=0.952 Sum_probs=25.1
Q ss_pred ccCCccchhhHHHHHhcCCCCCccCCC
Q 005286 676 PCLHKFHKDCIDPWLSRRPSCPVCKSS 702 (704)
Q Consensus 676 PCgHvFH~dCI~~WLk~k~SCPVCR~e 702 (704)
-|.|.||..||.+||++++.||+|.++
T Consensus 80 ~CNHaFH~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhhcCcCCCcCcc
Confidence 499999999999999999999999764
No 35
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.79 E-value=9.7e-06 Score=85.65 Aligned_cols=44 Identities=36% Similarity=0.678 Sum_probs=40.0
Q ss_pred CCcccccCCCCCCCCccEEeccCCccchhhHHHHHhcCCCCCccCCC
Q 005286 656 EEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSS 702 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~e 702 (704)
-..|-||-+-|... ..++|||.||.-||...|..+..||+||.+
T Consensus 25 ~lrC~IC~~~i~ip---~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~ 68 (391)
T COG5432 25 MLRCRICDCRISIP---CETTCGHTFCSLCIRRHLGTQPFCPVCRED 68 (391)
T ss_pred HHHhhhhhheeecc---eecccccchhHHHHHHHhcCCCCCcccccc
Confidence 45799999998877 677899999999999999999999999986
No 36
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.78 E-value=7.7e-06 Score=86.68 Aligned_cols=49 Identities=29% Similarity=0.649 Sum_probs=41.6
Q ss_pred CCCcccccCCCCCCCCccEEeccCCccchhhHHHHHh-----------------------cCCCCCccCCCC
Q 005286 655 FEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLS-----------------------RRPSCPVCKSSI 703 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk-----------------------~k~SCPVCR~eI 703 (704)
....|.|||..|..++.+.+++|-|.||..|+.++|. .+..|||||..|
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i 185 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERI 185 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhc
Confidence 3567999999999999999999999999999988662 123699999876
No 37
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.76 E-value=9.1e-06 Score=89.67 Aligned_cols=46 Identities=33% Similarity=0.824 Sum_probs=36.7
Q ss_pred CCcccccCCCCCCCC-ccEEeccCCccchhhHHHHHhcCCCCCccCCCC
Q 005286 656 EEACAICLDNPSIGD-SIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSI 703 (704)
Q Consensus 656 eetCsICLEeF~~Gd-~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~eI 703 (704)
-.+|+||||-+.... -+....|.|.||..|+.+| ...+||+||...
T Consensus 175 LPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w--~~~scpvcR~~q 221 (493)
T KOG0804|consen 175 LPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKW--WDSSCPVCRYCQ 221 (493)
T ss_pred CCCcchhHhhcCccccceeeeecccccchHHHhhc--ccCcChhhhhhc
Confidence 368999999987543 3455569999999999999 456899999753
No 38
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.68 E-value=1.4e-05 Score=68.16 Aligned_cols=49 Identities=33% Similarity=0.709 Sum_probs=22.8
Q ss_pred CCcccccCCCCC-CCCc-cEEe---ccCCccchhhHHHHHhc--C---------CCCCccCCCCC
Q 005286 656 EEACAICLDNPS-IGDS-IRHL---PCLHKFHKDCIDPWLSR--R---------PSCPVCKSSIT 704 (704)
Q Consensus 656 eetCsICLEeF~-~Gd~-VrvL---PCgHvFH~dCI~~WLk~--k---------~SCPVCR~eIS 704 (704)
+..|.||+..+. .++. ..+- .|+..||..||.+||.. + ..||.|+.+|+
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 457999999876 3322 1222 39999999999999963 1 24999998874
No 39
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=3e-05 Score=83.92 Aligned_cols=50 Identities=32% Similarity=0.814 Sum_probs=38.5
Q ss_pred CCCCcccccCCCCCCCC----ccEEec-cCCccchhhHHHHH--hc-----CCCCCccCCCC
Q 005286 654 NFEEACAICLDNPSIGD----SIRHLP-CLHKFHKDCIDPWL--SR-----RPSCPVCKSSI 703 (704)
Q Consensus 654 ~~eetCsICLEeF~~Gd----~VrvLP-CgHvFH~dCI~~WL--k~-----k~SCPVCR~eI 703 (704)
..+..|.|||+.....- ...+|| |.|.||..||..|- .+ ..+||.||...
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 34788999999865332 134556 99999999999998 34 57899999865
No 40
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.44 E-value=1.9e-05 Score=91.55 Aligned_cols=48 Identities=23% Similarity=0.519 Sum_probs=43.6
Q ss_pred CCcccccCCCCCCCCccEEeccCCccchhhHHHHHhcCCCCCccCCCC
Q 005286 656 EEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSI 703 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~eI 703 (704)
...|+|||..|.++......+|+|+||..||..|-+...+||+||.++
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF 170 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEF 170 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhh
Confidence 467999999998887777888999999999999999999999999865
No 41
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.00013 Score=78.98 Aligned_cols=46 Identities=28% Similarity=0.732 Sum_probs=38.7
Q ss_pred CCCcccccCCCCCCCCccEEeccCCc-cchhhHHHHHhcCCCCCccCCCC
Q 005286 655 FEEACAICLDNPSIGDSIRHLPCLHK-FHKDCIDPWLSRRPSCPVCKSSI 703 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvLPCgHv-FH~dCI~~WLk~k~SCPVCR~eI 703 (704)
...+|.|||.+-. .+.+|||-|. .|..|.+..--+.+.||+||.+|
T Consensus 289 ~gkeCVIClse~r---dt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi 335 (349)
T KOG4265|consen 289 SGKECVICLSESR---DTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPI 335 (349)
T ss_pred CCCeeEEEecCCc---ceEEecchhhehhHhHHHHHHHhhcCCCccccch
Confidence 4678999999854 4589999998 78899888766789999999986
No 42
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=3.4e-05 Score=83.27 Aligned_cols=46 Identities=33% Similarity=0.709 Sum_probs=37.2
Q ss_pred CCcccccCCCCCCCCccEEeccCCccchhhHHHHHh-cCCCCCccCCCC
Q 005286 656 EEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLS-RRPSCPVCKSSI 703 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk-~k~SCPVCR~eI 703 (704)
+..|+|||+-+... ..+.-|.|-||.+||..-|+ ..+.||.||+.+
T Consensus 43 ~v~c~icl~llk~t--mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l 89 (381)
T KOG0311|consen 43 QVICPICLSLLKKT--MTTKECLHRFCFDCIWKALRSGNNECPTCRKKL 89 (381)
T ss_pred hhccHHHHHHHHhh--cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhc
Confidence 67899999876543 22334999999999999998 588999999864
No 43
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.00019 Score=83.57 Aligned_cols=45 Identities=22% Similarity=0.576 Sum_probs=37.2
Q ss_pred CCcccccCCCCCCCCccEEeccCCccchhhHHHHHh-cCCCCCccCCCC
Q 005286 656 EEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLS-RRPSCPVCKSSI 703 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk-~k~SCPVCR~eI 703 (704)
-..|++|-..|.+. +++.|+|+||..||.+-+. +...||.|...+
T Consensus 643 ~LkCs~Cn~R~Kd~---vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aF 688 (698)
T KOG0978|consen 643 LLKCSVCNTRWKDA---VITKCGHVFCEECVQTRYETRQRKCPKCNAAF 688 (698)
T ss_pred ceeCCCccCchhhH---HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 45799999776653 4556999999999999997 688999998765
No 44
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.00015 Score=60.34 Aligned_cols=45 Identities=24% Similarity=0.592 Sum_probs=34.0
Q ss_pred CCcccccCCCCCCCCccEEeccCCc-cchhhHHH-HHhcCCCCCccCCCC
Q 005286 656 EEACAICLDNPSIGDSIRHLPCLHK-FHKDCIDP-WLSRRPSCPVCKSSI 703 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCgHv-FH~dCI~~-WLk~k~SCPVCR~eI 703 (704)
.++|.||+|...+. +...|||. .|++|-.+ |-..+..||+||.+|
T Consensus 7 ~dECTICye~pvds---VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi 53 (62)
T KOG4172|consen 7 SDECTICYEHPVDS---VLYTCGHMCMCYACGLRLKKALHGCCPICRAPI 53 (62)
T ss_pred ccceeeeccCcchH---HHHHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence 36799999986544 23359997 68899554 544899999999875
No 45
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.00064 Score=75.10 Aligned_cols=46 Identities=28% Similarity=0.683 Sum_probs=40.5
Q ss_pred CCCcccccCCCCCCCCccEEeccCCccchhhHHHHHhcCCCCCccCCCC
Q 005286 655 FEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSI 703 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~eI 703 (704)
.+..|.||+..|... +.+||||.||..||.+-|.....||.||.++
T Consensus 83 sef~c~vc~~~l~~p---v~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l 128 (398)
T KOG4159|consen 83 SEFECCVCSRALYPP---VVTPCGHSFCLECLDRSLDQETECPLCRDEL 128 (398)
T ss_pred chhhhhhhHhhcCCC---ccccccccccHHHHHHHhccCCCCccccccc
Confidence 367899999888766 6779999999999999888899999999875
No 46
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=96.63 E-value=0.0011 Score=81.06 Aligned_cols=51 Identities=31% Similarity=0.700 Sum_probs=41.1
Q ss_pred CCCCcccccCCCCCCCCccEEeccCCccchhhHHHHHhc----------CCCCCccCCCCC
Q 005286 654 NFEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSR----------RPSCPVCKSSIT 704 (704)
Q Consensus 654 ~~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~----------k~SCPVCR~eIS 704 (704)
+.++.|.||+.+--.......|.|+|+||..|...-|.. --+||+|+.+|+
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 347889999988776777889999999999998765542 237999998874
No 47
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.54 E-value=0.00062 Score=74.67 Aligned_cols=46 Identities=33% Similarity=0.807 Sum_probs=39.3
Q ss_pred CCcccccCCCCC-CCCccEEeccCCccchhhHHHHHhc--CCCCCccCC
Q 005286 656 EEACAICLDNPS-IGDSIRHLPCLHKFHKDCIDPWLSR--RPSCPVCKS 701 (704)
Q Consensus 656 eetCsICLEeF~-~Gd~VrvLPCgHvFH~dCI~~WLk~--k~SCPVCR~ 701 (704)
+.-|..|-|.+- ..+.+..|||.|+||..|+..+|.. ..+||-||+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 567999999985 4457889999999999999999975 468999984
No 48
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.52 E-value=0.00083 Score=73.89 Aligned_cols=44 Identities=32% Similarity=0.923 Sum_probs=37.4
Q ss_pred CcccccCCCCCCCCccEEeccCCccchhhHHHHHh--cCCCCCccCCCC
Q 005286 657 EACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLS--RRPSCPVCKSSI 703 (704)
Q Consensus 657 etCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk--~k~SCPVCR~eI 703 (704)
+-|-||-|. ...|.+-||||..|..|+..|-. ..+.||.||.+|
T Consensus 370 eLCKICaen---dKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEI 415 (563)
T KOG1785|consen 370 ELCKICAEN---DKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEI 415 (563)
T ss_pred HHHHHhhcc---CCCcccccccchHHHHHHHhhcccCCCCCCCceeeEe
Confidence 569999986 44677889999999999999974 368999999887
No 49
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=96.47 E-value=0.00078 Score=57.61 Aligned_cols=43 Identities=30% Similarity=0.670 Sum_probs=22.1
Q ss_pred CcccccCCCCCCCCccEEeccCCccchhhHHHHHhcCCCCCccCCCC
Q 005286 657 EACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSI 703 (704)
Q Consensus 657 etCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~eI 703 (704)
..|++|.+-+... |..-.|.|+|+..||..-+.. .||+|+.+.
T Consensus 8 LrCs~C~~~l~~p--v~l~~CeH~fCs~Ci~~~~~~--~CPvC~~Pa 50 (65)
T PF14835_consen 8 LRCSICFDILKEP--VCLGGCEHIFCSSCIRDCIGS--ECPVCHTPA 50 (65)
T ss_dssp TS-SSS-S--SS---B---SSS--B-TTTGGGGTTT--B-SSS--B-
T ss_pred cCCcHHHHHhcCC--ceeccCccHHHHHHhHHhcCC--CCCCcCChH
Confidence 3599999887654 444569999999999886653 499998763
No 50
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.45 E-value=0.0016 Score=71.62 Aligned_cols=47 Identities=28% Similarity=0.647 Sum_probs=40.2
Q ss_pred CCCcccccCCCCCCCCccEEeccCCccchhhHHHHHhcCCCCCccCCCC
Q 005286 655 FEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSI 703 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~eI 703 (704)
.+..|+||...+... +....|+|.||..||..|+..+..||.|+..+
T Consensus 20 ~~l~C~~C~~vl~~p--~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~ 66 (391)
T KOG0297|consen 20 ENLLCPICMSVLRDP--VQTTTCGHRFCAGCLLESLSNHQKCPVCRQEL 66 (391)
T ss_pred ccccCccccccccCC--CCCCCCCCcccccccchhhccCcCCccccccc
Confidence 467899999998766 22257999999999999999999999998775
No 51
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=96.32 E-value=0.0048 Score=54.25 Aligned_cols=31 Identities=26% Similarity=0.596 Sum_probs=26.8
Q ss_pred CCcccccCCCCCCCCccEEeccCCccchhhHH
Q 005286 656 EEACAICLDNPSIGDSIRHLPCLHKFHKDCID 687 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~ 687 (704)
...|+||-..+.. ..+.+.||||+||..|+.
T Consensus 78 ~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 78 STKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence 5679999999876 567788999999999985
No 52
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.26 E-value=0.0011 Score=71.31 Aligned_cols=48 Identities=31% Similarity=0.608 Sum_probs=38.8
Q ss_pred CCCCcccccCCCCCCCCccEEeccCCccchhhHHHHHhcCCCCCccCCCC
Q 005286 654 NFEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSI 703 (704)
Q Consensus 654 ~~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~eI 703 (704)
+.-.+|.+|---|.+.. .+.-|-|.||+.||.+.|...++||.|...|
T Consensus 13 n~~itC~LC~GYliDAT--TI~eCLHTFCkSCivk~l~~~~~CP~C~i~i 60 (331)
T KOG2660|consen 13 NPHITCRLCGGYLIDAT--TITECLHTFCKSCIVKYLEESKYCPTCDIVI 60 (331)
T ss_pred ccceehhhccceeecch--hHHHHHHHHHHHHHHHHHHHhccCCccceec
Confidence 44678999987776652 2234999999999999999999999997654
No 53
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.22 E-value=0.0019 Score=53.59 Aligned_cols=42 Identities=26% Similarity=0.537 Sum_probs=28.7
Q ss_pred CCCcccccCCCCCCCCccEEeccCCccchhhHHHHHh--cCCCCCc
Q 005286 655 FEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLS--RRPSCPV 698 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk--~k~SCPV 698 (704)
....|+|.+..|.. .|+...|+|+|-++.|.+||+ ....||+
T Consensus 10 ~~~~CPiT~~~~~~--PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFED--PVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SS--EEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhC--CcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 35789999999874 466678999999999999994 3567999
No 54
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.0042 Score=65.81 Aligned_cols=48 Identities=23% Similarity=0.509 Sum_probs=37.9
Q ss_pred CCCCcccccCCCCCCCCccEEeccCCccchhhHHHHHhc--CCCCCccCCCC
Q 005286 654 NFEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSR--RPSCPVCKSSI 703 (704)
Q Consensus 654 ~~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~--k~SCPVCR~eI 703 (704)
..+.+|++|-+..+.+ ....+|+|+||+.||..=+.- ..+||.|-.++
T Consensus 237 t~~~~C~~Cg~~PtiP--~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~ 286 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIP--HVIGKCGHIYCYYCIATSRLWDASFTCPLCGENV 286 (298)
T ss_pred cCCceeeccCCCCCCC--eeeccccceeehhhhhhhhcchhhcccCccCCCC
Confidence 3478899999987655 345579999999999987763 57999997654
No 55
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.0052 Score=63.72 Aligned_cols=51 Identities=27% Similarity=0.735 Sum_probs=41.4
Q ss_pred cCCCCCcccccCCCCCCCCccEEeccCCccchhhHHHHHhc--------CCCCCccCCCC
Q 005286 652 TDNFEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSR--------RPSCPVCKSSI 703 (704)
Q Consensus 652 ~d~~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~--------k~SCPVCR~eI 703 (704)
..+....|..|-..+..|+.+ .|-|.|+||.+|+.+|-.. ...||.|-.+|
T Consensus 46 DsDY~pNC~LC~t~La~gdt~-RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei 104 (299)
T KOG3970|consen 46 DSDYNPNCRLCNTPLASGDTT-RLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEI 104 (299)
T ss_pred hcCCCCCCceeCCccccCcce-eehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence 334467799999999988877 6679999999999999752 34799998876
No 56
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=95.76 E-value=0.0034 Score=60.42 Aligned_cols=35 Identities=26% Similarity=0.516 Sum_probs=30.0
Q ss_pred CCcccccCCCCCCCCccEEeccC------CccchhhHHHHH
Q 005286 656 EEACAICLDNPSIGDSIRHLPCL------HKFHKDCIDPWL 690 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCg------HvFH~dCI~~WL 690 (704)
..+|.||++.+...+-|+.++|+ |+||.+|+.+|-
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHH
Confidence 45799999999886678888886 899999999993
No 57
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.0053 Score=67.97 Aligned_cols=46 Identities=28% Similarity=0.646 Sum_probs=38.4
Q ss_pred CCcccccCCCCCCCCccEEeccCCccchhhHHHHHhc--------CCCCCccCC
Q 005286 656 EEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSR--------RPSCPVCKS 701 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~--------k~SCPVCR~ 701 (704)
-..|.||+++.........|||+|+||+.|++.++.. .-.||-|..
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred cccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 3579999999887788999999999999999999963 236887753
No 58
>PHA03096 p28-like protein; Provisional
Probab=95.27 E-value=0.0081 Score=63.96 Aligned_cols=45 Identities=27% Similarity=0.579 Sum_probs=33.5
Q ss_pred CcccccCCCCCC----CCccEEec-cCCccchhhHHHHHhc---CCCCCccCC
Q 005286 657 EACAICLDNPSI----GDSIRHLP-CLHKFHKDCIDPWLSR---RPSCPVCKS 701 (704)
Q Consensus 657 etCsICLEeF~~----Gd~VrvLP-CgHvFH~dCI~~WLk~---k~SCPVCR~ 701 (704)
..|.|||+.... ...-..|+ |.|.||..||..|-.. +.+||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 679999998643 23456777 9999999999999863 345655553
No 59
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.07 E-value=0.017 Score=60.71 Aligned_cols=48 Identities=19% Similarity=0.364 Sum_probs=43.2
Q ss_pred CCcccccCCCCCCCCccEEe-ccCCccchhhHHHHHhcCCCCCccCCCC
Q 005286 656 EEACAICLDNPSIGDSIRHL-PCLHKFHKDCIDPWLSRRPSCPVCKSSI 703 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvL-PCgHvFH~dCI~~WLk~k~SCPVCR~eI 703 (704)
...|+||.+.+.+...+..| ||||+|+++|+.+.+.....||+|-.++
T Consensus 221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~pl 269 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPL 269 (303)
T ss_pred ceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcC
Confidence 46799999999988887777 6999999999999999999999997765
No 60
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=94.99 E-value=0.01 Score=60.72 Aligned_cols=44 Identities=23% Similarity=0.412 Sum_probs=38.0
Q ss_pred CCcccccCCCCCCCCccEEeccCCccchhhHHHHHhcCCCCCccCCC
Q 005286 656 EEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSS 702 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~e 702 (704)
...|.||-++|... ++..|||.||..|...-++....|-+|-..
T Consensus 196 PF~C~iCKkdy~sp---vvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~ 239 (259)
T COG5152 196 PFLCGICKKDYESP---VVTECGHSFCSLCAIRKYQKGDECGVCGKA 239 (259)
T ss_pred ceeehhchhhccch---hhhhcchhHHHHHHHHHhccCCcceecchh
Confidence 56799999999876 577799999999988888888899999653
No 61
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=94.87 E-value=0.014 Score=46.48 Aligned_cols=40 Identities=28% Similarity=0.882 Sum_probs=27.7
Q ss_pred ccccCCCCCCCCccEEeccC-----CccchhhHHHHHh--cCCCCCcc
Q 005286 659 CAICLDNPSIGDSIRHLPCL-----HKFHKDCIDPWLS--RRPSCPVC 699 (704)
Q Consensus 659 CsICLEeF~~Gd~VrvLPCg-----HvFH~dCI~~WLk--~k~SCPVC 699 (704)
|-||++.-...+ ..+.||. -..|..|+.+|+. .+..|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 779999876655 3467863 3789999999998 46789998
No 62
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.80 E-value=0.017 Score=63.12 Aligned_cols=46 Identities=33% Similarity=0.697 Sum_probs=33.4
Q ss_pred cCCCCCcccccCCCCCCCCccEEeccCCccchhhHHHHHhcCCCCCccCCCC
Q 005286 652 TDNFEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSI 703 (704)
Q Consensus 652 ~d~~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~eI 703 (704)
.......|.||++++.. ..-+||||+-| |+.--. .-.+||+||..|
T Consensus 301 ~~~~p~lcVVcl~e~~~---~~fvpcGh~cc--ct~cs~-~l~~CPvCR~rI 346 (355)
T KOG1571|consen 301 ELPQPDLCVVCLDEPKS---AVFVPCGHVCC--CTLCSK-HLPQCPVCRQRI 346 (355)
T ss_pred ccCCCCceEEecCCccc---eeeecCCcEEE--chHHHh-hCCCCchhHHHH
Confidence 33446789999999776 47889999966 655432 234599999765
No 63
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.76 E-value=0.011 Score=58.98 Aligned_cols=29 Identities=45% Similarity=1.024 Sum_probs=26.8
Q ss_pred CCcccccCCCCCCCCccEEeccCCccchh
Q 005286 656 EEACAICLDNPSIGDSIRHLPCLHKFHKD 684 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCgHvFH~d 684 (704)
..+|.||||++..|+.+..|||-.+||+.
T Consensus 177 kGECvICLEdL~~GdtIARLPCLCIYHK~ 205 (205)
T KOG0801|consen 177 KGECVICLEDLEAGDTIARLPCLCIYHKQ 205 (205)
T ss_pred CCcEEEEhhhccCCCceeccceEEEeecC
Confidence 56899999999999999999999999973
No 64
>PF15295 CCDC50_N: Coiled-coil domain-containing protein 50 N-terminus
Probab=94.55 E-value=0.025 Score=54.42 Aligned_cols=42 Identities=40% Similarity=0.461 Sum_probs=33.0
Q ss_pred hhh-hhHHHHHHHHHHHhhcCCCCCc-hhhHHHHHHHhHHHHhh
Q 005286 478 QLE-VDQMLALELQEQLYHESPLFLS-GEIDENLARMLQQEEDA 519 (704)
Q Consensus 478 QiE-~DE~lAReLQEQl~~E~P~~~g-~eIDE~iAwsLQ~eEd~ 519 (704)
+|| .|+.+||+|||+|..+.--..- ++=|+.|||.||++|.-
T Consensus 80 e~Ee~D~e~Ar~iqe~l~r~~e~~r~~Ee~de~iA~~Lqe~e~~ 123 (132)
T PF15295_consen 80 EIEEQDEEYAREIQEELQREAEEQRQQEEEDEEIARRLQEEERQ 123 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 444 8999999999999887553332 68899999999976653
No 65
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.54 E-value=0.02 Score=62.69 Aligned_cols=47 Identities=28% Similarity=0.636 Sum_probs=40.2
Q ss_pred CCCCcccccCCCCCCCCccEEeccCCccchhhHHHHHhcCCCCCccCCCC
Q 005286 654 NFEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSI 703 (704)
Q Consensus 654 ~~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~eI 703 (704)
.++..|+||.-..... +..||+|.=|+.||.+-|...+.|-.|+..+
T Consensus 420 sEd~lCpICyA~pi~A---vf~PC~H~SC~~CI~qHlmN~k~CFfCktTv 466 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINA---VFAPCSHRSCYGCITQHLMNCKRCFFCKTTV 466 (489)
T ss_pred cccccCcceecccchh---hccCCCCchHHHHHHHHHhcCCeeeEeccee
Confidence 4578899999764433 6779999999999999999999999999865
No 66
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=94.27 E-value=0.014 Score=66.40 Aligned_cols=47 Identities=30% Similarity=0.755 Sum_probs=36.9
Q ss_pred CCCcccccCCCCCCCCccEEeccCCccchhhHHHHHh-----cCCCCCccCCCCC
Q 005286 655 FEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLS-----RRPSCPVCKSSIT 704 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk-----~k~SCPVCR~eIS 704 (704)
.+..|.+|-+.- +......|.|+||.-||.++.. .+-+||+|-..|+
T Consensus 535 ~~~~C~lc~d~a---ed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 535 GEVECGLCHDPA---EDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred CceeecccCChh---hhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 467899999863 3345677999999999999985 3568999977664
No 67
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.06 E-value=0.044 Score=57.12 Aligned_cols=48 Identities=19% Similarity=0.376 Sum_probs=38.1
Q ss_pred CCCcccccCCCCCCCCccEEe-ccCCccchhhHHHHHhcCCCCCccCCCC
Q 005286 655 FEEACAICLDNPSIGDSIRHL-PCLHKFHKDCIDPWLSRRPSCPVCKSSI 703 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvL-PCgHvFH~dCI~~WLk~k~SCPVCR~eI 703 (704)
....|+|+..+|......+.| ||||+|...||..- .....||+|-.++
T Consensus 112 ~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f 160 (260)
T PF04641_consen 112 GRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPF 160 (260)
T ss_pred ceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCcc
Confidence 367899999999655555555 89999999999997 2356799997765
No 68
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.95 E-value=0.003 Score=69.43 Aligned_cols=48 Identities=23% Similarity=0.625 Sum_probs=43.1
Q ss_pred CCcccccCCCCCCC-CccEEeccCCccchhhHHHHHhcCCCCCccCCCC
Q 005286 656 EEACAICLDNPSIG-DSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSI 703 (704)
Q Consensus 656 eetCsICLEeF~~G-d~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~eI 703 (704)
...|+||.+.|... +++..+-|||.+|.+||.+||.....||-|+.+|
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel 244 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRREL 244 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhh
Confidence 56799999999866 6778888999999999999999999999999875
No 69
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=93.74 E-value=0.072 Score=57.95 Aligned_cols=59 Identities=19% Similarity=0.255 Sum_probs=42.7
Q ss_pred HhcCCcceeecCCCCCcccccCCCCCCCCccEEec-cCCccchhhHHHHHhcCCCCCccCCCC
Q 005286 642 INSLPLSTVQTDNFEEACAICLDNPSIGDSIRHLP-CLHKFHKDCIDPWLSRRPSCPVCKSSI 703 (704)
Q Consensus 642 I~sLP~sti~~d~~eetCsICLEeF~~Gd~VrvLP-CgHvFH~dCI~~WLk~k~SCPVCR~eI 703 (704)
++.+.............|+||+..-.+. .+|. -|-+||+.||..++...+.|||--.++
T Consensus 286 h~~~~se~e~l~~~~~~CpvClk~r~Np---tvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 286 HKQYNSESELLPPDREVCPVCLKKRQNP---TVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred hhhcccccccCCCccccChhHHhccCCC---ceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 4444444444444567899999986554 2333 599999999999999999999965554
No 70
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.61 E-value=0.033 Score=59.97 Aligned_cols=42 Identities=29% Similarity=0.585 Sum_probs=33.5
Q ss_pred CCcccccCCCCCCCCccEEec-cCCccchhhHHHHHh-cCCCCCccC
Q 005286 656 EEACAICLDNPSIGDSIRHLP-CLHKFHKDCIDPWLS-RRPSCPVCK 700 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLP-CgHvFH~dCI~~WLk-~k~SCPVCR 700 (704)
...|+.|-.-+... ..+| |+|.||.+||..-|. ....||.|-
T Consensus 274 ~LkCplc~~Llrnp---~kT~cC~~~fc~eci~~al~dsDf~CpnC~ 317 (427)
T COG5222 274 SLKCPLCHCLLRNP---MKTPCCGHTFCDECIGTALLDSDFKCPNCS 317 (427)
T ss_pred cccCcchhhhhhCc---ccCccccchHHHHHHhhhhhhccccCCCcc
Confidence 36799998876654 3445 899999999998776 688999994
No 71
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.57 E-value=0.027 Score=60.37 Aligned_cols=45 Identities=22% Similarity=0.312 Sum_probs=39.3
Q ss_pred CCcccccCCCCCCCCccEEeccCCccchhhHHHHHhcCCCCCccCCCC
Q 005286 656 EEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSI 703 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~eI 703 (704)
...|-||...|... ++..|+|.||..|...-|+....|++|-+.+
T Consensus 241 Pf~c~icr~~f~~p---Vvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t 285 (313)
T KOG1813|consen 241 PFKCFICRKYFYRP---VVTKCGHYFCEVCALKPYQKGEKCYVCSQQT 285 (313)
T ss_pred Cccccccccccccc---hhhcCCceeehhhhccccccCCcceeccccc
Confidence 56799999999877 6778999999999998888889999997653
No 72
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=93.34 E-value=0.037 Score=65.86 Aligned_cols=46 Identities=28% Similarity=0.724 Sum_probs=34.7
Q ss_pred CCCcccccCCCCCCCCccEE-eccCCccchhhHHHHHhc-------CCCCCccC
Q 005286 655 FEEACAICLDNPSIGDSIRH-LPCLHKFHKDCIDPWLSR-------RPSCPVCK 700 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~Vrv-LPCgHvFH~dCI~~WLk~-------k~SCPVCR 700 (704)
...+|.||++.+.....+-- -.|.|+||..||.+|-+. .-.||.|.
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cq 243 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQ 243 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCccc
Confidence 35679999999876554322 239999999999999863 12599997
No 73
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=92.98 E-value=0.054 Score=44.08 Aligned_cols=44 Identities=23% Similarity=0.582 Sum_probs=22.3
Q ss_pred ccccCCCCCCCCccEEec--cCCccchhhHHHHHh-cCCCCCccCCCC
Q 005286 659 CAICLDNPSIGDSIRHLP--CLHKFHKDCIDPWLS-RRPSCPVCKSSI 703 (704)
Q Consensus 659 CsICLEeF~~Gd~VrvLP--CgHvFH~dCI~~WLk-~k~SCPVCR~eI 703 (704)
|++|.+++...+ ...+| |++..+..|...-+. ....||-||.+-
T Consensus 1 cp~C~e~~d~~d-~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETD-KDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCC-TT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCC-CccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789999984333 33455 899999999888776 588999999863
No 74
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=92.79 E-value=0.075 Score=58.26 Aligned_cols=47 Identities=26% Similarity=0.659 Sum_probs=37.6
Q ss_pred CCCCCcccccCCCCCCCCccEEeccCCccchhhHHHH--HhcCCCCCccCCC
Q 005286 653 DNFEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPW--LSRRPSCPVCKSS 702 (704)
Q Consensus 653 d~~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~W--Lk~k~SCPVCR~e 702 (704)
+.+...|.||-+..+- +..+||+|..|.-|-.+. |-.++.||+||.+
T Consensus 58 DEen~~C~ICA~~~TY---s~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE 106 (493)
T COG5236 58 DEENMNCQICAGSTTY---SARYPCGHQICHACAVRLRALYMQKGCPLCRTE 106 (493)
T ss_pred ccccceeEEecCCceE---EEeccCCchHHHHHHHHHHHHHhccCCCccccc
Confidence 3346779999987653 478999999999997654 5578999999975
No 75
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=92.56 E-value=0.044 Score=64.49 Aligned_cols=43 Identities=30% Similarity=0.749 Sum_probs=35.7
Q ss_pred CcccccCCCCCCCCccEEeccCCccchhhHHHHHhc--CCCCCccCCCC
Q 005286 657 EACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSR--RPSCPVCKSSI 703 (704)
Q Consensus 657 etCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~--k~SCPVCR~eI 703 (704)
..|.||++ .+.....+|+|.||.+|+.+-+.. ...||+||..+
T Consensus 455 ~~c~ic~~----~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l 499 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVL 499 (674)
T ss_pred cccccccc----cccceeecccchHHHHHHHhccccccCCCCcHHHHHH
Confidence 78999999 466678889999999999998874 34699998654
No 76
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=92.55 E-value=0.1 Score=51.78 Aligned_cols=46 Identities=26% Similarity=0.806 Sum_probs=32.1
Q ss_pred CCCcccccCCCCCCCCccEEeccCC---ccchhhHHHHHhc--CCCCCccCCC
Q 005286 655 FEEACAICLDNPSIGDSIRHLPCLH---KFHKDCIDPWLSR--RPSCPVCKSS 702 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvLPCgH---vFH~dCI~~WLk~--k~SCPVCR~e 702 (704)
.+..|-||.++... ...--.|.. .-|.+|+.+|+.. ...||+|+.+
T Consensus 7 ~~~~CRIC~~~~~~--~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~ 57 (162)
T PHA02825 7 MDKCCWICKDEYDV--VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGP 57 (162)
T ss_pred CCCeeEecCCCCCC--ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCe
Confidence 46789999988532 111001334 5699999999974 5689999875
No 77
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.08 E-value=0.03 Score=60.05 Aligned_cols=41 Identities=34% Similarity=0.781 Sum_probs=30.7
Q ss_pred CCcccccCCCCCCCCccEEeccCCc-cchhhHHHHHhcCCCCCccCCCC
Q 005286 656 EEACAICLDNPSIGDSIRHLPCLHK-FHKDCIDPWLSRRPSCPVCKSSI 703 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCgHv-FH~dCI~~WLk~k~SCPVCR~eI 703 (704)
..-|.||++... ...-|+|||. -|..|-+. -+.|||||+.|
T Consensus 300 ~~LC~ICmDaP~---DCvfLeCGHmVtCt~CGkr----m~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDAPR---DCVFLECGHMVTCTKCGKR----MNECPICRQYI 341 (350)
T ss_pred HHHHHHHhcCCc---ceEEeecCcEEeehhhccc----cccCchHHHHH
Confidence 567999998754 4578999996 46777443 34899999754
No 78
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=90.79 E-value=0.095 Score=56.80 Aligned_cols=41 Identities=29% Similarity=0.617 Sum_probs=28.3
Q ss_pred cccccCCCCCCCCccEEeccCCccchhhHHHHHhcCCCCCccCCC
Q 005286 658 ACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSS 702 (704)
Q Consensus 658 tCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~e 702 (704)
.|.-|-.. ..-.-+.+||.|+||.+|.. +...+.||.|-..
T Consensus 92 fCd~Cd~P--I~IYGRmIPCkHvFCl~CAr--~~~dK~Cp~C~d~ 132 (389)
T KOG2932|consen 92 FCDRCDFP--IAIYGRMIPCKHVFCLECAR--SDSDKICPLCDDR 132 (389)
T ss_pred eecccCCc--ceeeecccccchhhhhhhhh--cCccccCcCcccH
Confidence 35555433 33345889999999999954 3457799999543
No 79
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=89.94 E-value=0.13 Score=54.88 Aligned_cols=46 Identities=26% Similarity=0.626 Sum_probs=38.7
Q ss_pred CCcccccCCCCCCCC-ccEEeccCCccchhhHHHHHhcCCCCCccCC
Q 005286 656 EEACAICLDNPSIGD-SIRHLPCLHKFHKDCIDPWLSRRPSCPVCKS 701 (704)
Q Consensus 656 eetCsICLEeF~~Gd-~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~ 701 (704)
...|+||.+.+.... .+..|+|||.-|..|..........||+|..
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 455999999876544 6778899999999999998887799999976
No 80
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.83 E-value=0.16 Score=60.88 Aligned_cols=41 Identities=24% Similarity=0.801 Sum_probs=32.7
Q ss_pred CcccccCCCCCCCCccEEeccCCccchhhHHHHHhcCCCCCccCCC
Q 005286 657 EACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSS 702 (704)
Q Consensus 657 etCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~e 702 (704)
..|.+|--.+..+ .+..-|||.||..|+. .....||-|+.+
T Consensus 841 skCs~C~~~LdlP--~VhF~CgHsyHqhC~e---~~~~~CP~C~~e 881 (933)
T KOG2114|consen 841 SKCSACEGTLDLP--FVHFLCGHSYHQHCLE---DKEDKCPKCLPE 881 (933)
T ss_pred eeecccCCccccc--eeeeecccHHHHHhhc---cCcccCCccchh
Confidence 5799998776654 4566799999999998 456789999864
No 81
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=89.67 E-value=0.11 Score=40.85 Aligned_cols=41 Identities=27% Similarity=0.788 Sum_probs=23.8
Q ss_pred ccccCCCCCCCCccEEeccCCccchhhHHHHHhcCC--CCCcc
Q 005286 659 CAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRP--SCPVC 699 (704)
Q Consensus 659 CsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k~--SCPVC 699 (704)
|.+|-+-...|..-....|+=.+|..|+..+++... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 678888877773332224888999999999998654 79998
No 82
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.59 E-value=0.2 Score=50.89 Aligned_cols=51 Identities=31% Similarity=0.746 Sum_probs=34.8
Q ss_pred CCCCcccccCCCCCCCC----ccEEeccCCccchhhHHHHHhc----C-------CCCCccCCCCC
Q 005286 654 NFEEACAICLDNPSIGD----SIRHLPCLHKFHKDCIDPWLSR----R-------PSCPVCKSSIT 704 (704)
Q Consensus 654 ~~eetCsICLEeF~~Gd----~VrvLPCgHvFH~dCI~~WLk~----k-------~SCPVCR~eIS 704 (704)
++-..|.||..--..|. ..--..||.-||.-|+..||+. . ..||.|-.+|+
T Consensus 163 d~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 163 DELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred hhhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 33457999985322332 1223459999999999999962 1 25999988874
No 83
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.44 E-value=0.16 Score=60.93 Aligned_cols=35 Identities=29% Similarity=0.606 Sum_probs=28.6
Q ss_pred CCCcccccCCCCCCCCccEEeccCCccchhhHHHHH
Q 005286 655 FEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWL 690 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WL 690 (704)
..+.|.||...+... ...+.||||.||.+||.+-.
T Consensus 816 p~d~C~~C~~~ll~~-pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 816 PQDSCDHCGRPLLIK-PFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred CccchHHhcchhhcC-cceeeeccchHHHHHHHHHH
Confidence 368899999877643 66788999999999998753
No 84
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=88.69 E-value=0.1 Score=64.57 Aligned_cols=42 Identities=38% Similarity=0.748 Sum_probs=36.3
Q ss_pred CcccccCCCCC-CCCccEEeccCCccchhhHHHHHhcCCCCCccCC
Q 005286 657 EACAICLDNPS-IGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKS 701 (704)
Q Consensus 657 etCsICLEeF~-~Gd~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~ 701 (704)
..|.||++.+. .+ .+..|||.||..|+..|+..+..||+|+.
T Consensus 1154 ~~c~ic~dil~~~~---~I~~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1154 FVCEICLDILRNQG---GIAGCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred cchHHHHHHHHhcC---CeeeechhHhhhHHHHHHHHhccCcchhh
Confidence 47999999876 33 46679999999999999999999999974
No 85
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=88.34 E-value=0.23 Score=41.60 Aligned_cols=43 Identities=30% Similarity=0.689 Sum_probs=32.0
Q ss_pred CCcccccCCCCCCCCccEEeccCCccchhhHHHHHhcCCCCCccCCCC
Q 005286 656 EEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSI 703 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~eI 703 (704)
...|..|... +..-.++||+|+.+..|..- .+-+-||+|-.++
T Consensus 7 ~~~~~~~~~~---~~~~~~~pCgH~I~~~~f~~--~rYngCPfC~~~~ 49 (55)
T PF14447_consen 7 EQPCVFCGFV---GTKGTVLPCGHLICDNCFPG--ERYNGCPFCGTPF 49 (55)
T ss_pred ceeEEEcccc---ccccccccccceeeccccCh--hhccCCCCCCCcc
Confidence 4567777765 33447899999999999554 4677899997765
No 86
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=86.96 E-value=0.4 Score=51.72 Aligned_cols=42 Identities=24% Similarity=0.539 Sum_probs=34.8
Q ss_pred CCcccccCCCCCCCCccEEecc--CCccchhhHHHHHhcCCCCCccCCCCC
Q 005286 656 EEACAICLDNPSIGDSIRHLPC--LHKFHKDCIDPWLSRRPSCPVCKSSIT 704 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPC--gHvFH~dCI~~WLk~k~SCPVCR~eIS 704 (704)
-.+|+||.+.+... ++.| ||+-|..|-. +..+.||.||.+|.
T Consensus 48 lleCPvC~~~l~~P----i~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 48 LLDCPVCFNPLSPP----IFQCDNGHLACSSCRT---KVSNKCPTCRLPIG 91 (299)
T ss_pred hccCchhhccCccc----ceecCCCcEehhhhhh---hhcccCCccccccc
Confidence 46799999998877 7778 7999999965 34788999998874
No 87
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.51 E-value=0.4 Score=49.14 Aligned_cols=38 Identities=29% Similarity=0.717 Sum_probs=28.2
Q ss_pred ccccCCCCCCCCccEEeccCCc-cchhhHHHHHhcCCCCCccCCCC
Q 005286 659 CAICLDNPSIGDSIRHLPCLHK-FHKDCIDPWLSRRPSCPVCKSSI 703 (704)
Q Consensus 659 CsICLEeF~~Gd~VrvLPCgHv-FH~dCI~~WLk~k~SCPVCR~eI 703 (704)
|-+|-+. +-.|..|||.|. +|..|=.. ...||+|+...
T Consensus 161 Cr~C~~~---~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~ 199 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLPCRHLCLCGICDES----LRICPICRSPK 199 (207)
T ss_pred ceecCcC---CceEEeecccceEeccccccc----CccCCCCcChh
Confidence 8888775 556889999865 77788443 55699999764
No 88
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=85.36 E-value=0.52 Score=51.86 Aligned_cols=51 Identities=22% Similarity=0.568 Sum_probs=35.5
Q ss_pred cCCCCCcccccCCCCCCCCc-cEEeccCCccchhhHHHHHh-cCCCCCccCCC
Q 005286 652 TDNFEEACAICLDNPSIGDS-IRHLPCLHKFHKDCIDPWLS-RRPSCPVCKSS 702 (704)
Q Consensus 652 ~d~~eetCsICLEeF~~Gd~-VrvLPCgHvFH~dCI~~WLk-~k~SCPVCR~e 702 (704)
.+++++-|+.|+|.+...++ ..-.|||-..|.-|...--. -+..||-||..
T Consensus 10 sedeed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~ 62 (480)
T COG5175 10 SEDEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRK 62 (480)
T ss_pred cccccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhh
Confidence 44456679999999987774 34456887777777433222 36789999864
No 89
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=84.38 E-value=0.44 Score=49.32 Aligned_cols=47 Identities=28% Similarity=0.757 Sum_probs=36.0
Q ss_pred CCcccccCCCCCCCCc-cEEeccC-----CccchhhHHHHHh--cCCCCCccCCC
Q 005286 656 EEACAICLDNPSIGDS-IRHLPCL-----HKFHKDCIDPWLS--RRPSCPVCKSS 702 (704)
Q Consensus 656 eetCsICLEeF~~Gd~-VrvLPCg-----HvFH~dCI~~WLk--~k~SCPVCR~e 702 (704)
+..|-||.++...... ....||. +..|..|+..|+. .+..|.+|...
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~ 132 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSF 132 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeeccccc
Confidence 4689999998654332 4566763 6689999999998 56789999764
No 90
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=83.88 E-value=1.3 Score=49.21 Aligned_cols=27 Identities=22% Similarity=0.935 Sum_probs=19.9
Q ss_pred cCCccchhhHHHHHhc-------------CCCCCccCCCC
Q 005286 677 CLHKFHKDCIDPWLSR-------------RPSCPVCKSSI 703 (704)
Q Consensus 677 CgHvFH~dCI~~WLk~-------------k~SCPVCR~eI 703 (704)
|-=.+|.+|+-+|+-. +-.||.||+.+
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~F 350 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKF 350 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccc
Confidence 3445678999999842 33699999875
No 91
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=83.46 E-value=0.54 Score=56.01 Aligned_cols=28 Identities=29% Similarity=0.538 Sum_probs=24.0
Q ss_pred ccEEeccCCccchhhHHHHHhcCCCCCc
Q 005286 671 SIRHLPCLHKFHKDCIDPWLSRRPSCPV 698 (704)
Q Consensus 671 ~VrvLPCgHvFH~dCI~~WLk~k~SCPV 698 (704)
......|+|+-|.+|...|+.....||-
T Consensus 1042 s~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1042 SNFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred chhhccccccccHHHHHHHHhcCCcCCC
Confidence 3445669999999999999999999984
No 92
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=82.75 E-value=0.56 Score=56.05 Aligned_cols=47 Identities=13% Similarity=0.289 Sum_probs=34.8
Q ss_pred CCcccccCCCCCCCC-ccEEec---cCCccchhhHHHHHhc------CCCCCccCCC
Q 005286 656 EEACAICLDNPSIGD-SIRHLP---CLHKFHKDCIDPWLSR------RPSCPVCKSS 702 (704)
Q Consensus 656 eetCsICLEeF~~Gd-~VrvLP---CgHvFH~dCI~~WLk~------k~SCPVCR~e 702 (704)
..+|.||..+|...+ ....+| |+|.||..||..|+.+ +-.|++|..-
T Consensus 96 s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~C 152 (1134)
T KOG0825|consen 96 SDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEEC 152 (1134)
T ss_pred ccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHH
Confidence 467888888887632 344556 9999999999999863 4568988653
No 93
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.39 E-value=1 Score=50.30 Aligned_cols=47 Identities=21% Similarity=0.361 Sum_probs=40.2
Q ss_pred CCcccccCCCCCCCCccEEeccCCccchhhHHHHHhc---CCCCCccCCC
Q 005286 656 EEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSR---RPSCPVCKSS 702 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~---k~SCPVCR~e 702 (704)
-..|+|=-+.-...+..+.|.|||+-.++-|.+-.+. ...||.|=.+
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 5689999999888889999999999999999998764 3679999543
No 94
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.81 E-value=0.64 Score=49.51 Aligned_cols=48 Identities=27% Similarity=0.762 Sum_probs=34.0
Q ss_pred CCCcccccCCCCCCCCcc-EEecc-----CCccchhhHHHHHhcC--------CCCCccCCC
Q 005286 655 FEEACAICLDNPSIGDSI-RHLPC-----LHKFHKDCIDPWLSRR--------PSCPVCKSS 702 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~V-rvLPC-----gHvFH~dCI~~WLk~k--------~SCPVCR~e 702 (704)
.+..|=||+..=++.-.. -+-|| .|..|..||..|+..+ -+||.|+.+
T Consensus 19 ~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTE 80 (293)
T KOG3053|consen 19 LERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTE 80 (293)
T ss_pred cceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcch
Confidence 367799999864332211 24476 5999999999999643 269999875
No 95
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.14 E-value=0.85 Score=50.63 Aligned_cols=38 Identities=32% Similarity=0.667 Sum_probs=28.9
Q ss_pred CCCcccccCCCCCCC-CccEEeccCCccchhhHHHHHhc
Q 005286 655 FEEACAICLDNPSIG-DSIRHLPCLHKFHKDCIDPWLSR 692 (704)
Q Consensus 655 ~eetCsICLEeF~~G-d~VrvLPCgHvFH~dCI~~WLk~ 692 (704)
...+|.||+.++... ....++.|+|.||.+|+++.+..
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEV 183 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhh
Confidence 467899999554444 44446679999999999998874
No 96
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=76.18 E-value=0.98 Score=52.73 Aligned_cols=41 Identities=34% Similarity=0.829 Sum_probs=28.5
Q ss_pred CCcccccCCC-----CCCCCccEEeccCCccchhhHHHHHhcCCCCCcc
Q 005286 656 EEACAICLDN-----PSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVC 699 (704)
Q Consensus 656 eetCsICLEe-----F~~Gd~VrvLPCgHvFH~dCI~~WLk~k~SCPVC 699 (704)
...|.||... |......+...|+++||+.|... ....||.|
T Consensus 511 gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r---~s~~CPrC 556 (580)
T KOG1829|consen 511 GFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR---KSPCCPRC 556 (580)
T ss_pred eeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc---cCCCCCch
Confidence 5678899543 44344455667999999999554 34449999
No 97
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=75.62 E-value=3.6 Score=34.53 Aligned_cols=39 Identities=28% Similarity=0.602 Sum_probs=31.4
Q ss_pred CCcccccCCCCCCCCccEEec-cCCccchhhHHHHHhcCCCCCc
Q 005286 656 EEACAICLDNPSIGDSIRHLP-CLHKFHKDCIDPWLSRRPSCPV 698 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLP-CgHvFH~dCI~~WLk~k~SCPV 698 (704)
...|.+|-+.|..++.+++-| |+-.||.+|-.+ ...|-+
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~ 44 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCIN 44 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEe
Confidence 467999999999888888887 999999999544 445544
No 98
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=70.56 E-value=1 Score=53.43 Aligned_cols=45 Identities=33% Similarity=0.675 Sum_probs=36.2
Q ss_pred CCcccccCCCCCCCCccEEeccCCccchhhHHHHHhc---CCCCCccCCCC
Q 005286 656 EEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSR---RPSCPVCKSSI 703 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~---k~SCPVCR~eI 703 (704)
..+|.||++.+... ..+.|.|.|+..|+..-|.. ...||+|+..+
T Consensus 21 ~lEc~ic~~~~~~p---~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~ 68 (684)
T KOG4362|consen 21 ILECPICLEHVKEP---SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDI 68 (684)
T ss_pred hccCCceeEEeecc---chhhhhHHHHhhhhhceeeccCccccchhhhhhh
Confidence 45799999998776 56789999999998876654 45799998643
No 99
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.04 E-value=2.3 Score=51.20 Aligned_cols=43 Identities=33% Similarity=0.671 Sum_probs=32.7
Q ss_pred CCcccccCCCCC-CC---CccEEeccCCccchhhHHHHHhcCCCCCcc
Q 005286 656 EEACAICLDNPS-IG---DSIRHLPCLHKFHKDCIDPWLSRRPSCPVC 699 (704)
Q Consensus 656 eetCsICLEeF~-~G---d~VrvLPCgHvFH~dCI~~WLk~k~SCPVC 699 (704)
+..|+-|.+... .+ +.++++-|+|+||+.|+.--..++. |-.|
T Consensus 784 e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 784 EERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred hhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChh
Confidence 467999998764 23 5788999999999999887765544 6555
No 100
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.82 E-value=3.4 Score=46.50 Aligned_cols=37 Identities=27% Similarity=0.524 Sum_probs=31.5
Q ss_pred CCCCcccccCCCCCCCCccEEeccCCccchhhHHHHHhc
Q 005286 654 NFEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSR 692 (704)
Q Consensus 654 ~~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~ 692 (704)
.....|-||.+.+.. .+..+.|+|.|+..|+...|..
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhh
Confidence 346789999999876 5667889999999999999974
No 101
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=66.32 E-value=2.6 Score=34.83 Aligned_cols=41 Identities=27% Similarity=0.686 Sum_probs=25.5
Q ss_pred cccccCCCCCCCCccEEeccC-CccchhhHHHHHhcCCCCCccCCCC
Q 005286 658 ACAICLDNPSIGDSIRHLPCL-HKFHKDCIDPWLSRRPSCPVCKSSI 703 (704)
Q Consensus 658 tCsICLEeF~~Gd~VrvLPCg-HvFH~dCI~~WLk~k~SCPVCR~eI 703 (704)
.|--|+-... ..+.|. |..+..|+..-|.....||+|..+|
T Consensus 4 nCKsCWf~~k-----~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~L 45 (50)
T PF03854_consen 4 NCKSCWFANK-----GLIKCSDHYLCLNCLTLMLSRSDRCPICGKPL 45 (50)
T ss_dssp ---SS-S--S-----SEEE-SS-EEEHHHHHHT-SSSSEETTTTEE-
T ss_pred cChhhhhcCC-----CeeeecchhHHHHHHHHHhccccCCCcccCcC
Confidence 3556665432 255685 9999999999999999999998765
No 102
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=63.93 E-value=1.8 Score=35.05 Aligned_cols=42 Identities=24% Similarity=0.612 Sum_probs=21.5
Q ss_pred cccccCCCCCCCCccEEeccCCccchhhHHHHHhcC-----CCCCccCCC
Q 005286 658 ACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRR-----PSCPVCKSS 702 (704)
Q Consensus 658 tCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k-----~SCPVCR~e 702 (704)
.|+|....+.. .++-..|.|.-+.+ +..||... -.||+|.++
T Consensus 4 ~CPls~~~i~~--P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 4 RCPLSFQRIRI--PVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp B-TTTSSB-SS--EEEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eCCCCCCEEEe--CccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 57887776654 35666799996655 77888632 359999763
No 103
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=63.15 E-value=4.7 Score=48.84 Aligned_cols=48 Identities=23% Similarity=0.701 Sum_probs=35.3
Q ss_pred CCcccccCCCCCCCCccEEe-ccC---CccchhhHHHHHh--cCCCCCccCCCC
Q 005286 656 EEACAICLDNPSIGDSIRHL-PCL---HKFHKDCIDPWLS--RRPSCPVCKSSI 703 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvL-PCg---HvFH~dCI~~WLk--~k~SCPVCR~eI 703 (704)
...|-||..+=..++.+..- .|. -..|.+|+.+|+. .+..|-+|..++
T Consensus 12 ~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~ 65 (1175)
T COG5183 12 KRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEY 65 (1175)
T ss_pred chhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeeccee
Confidence 57899999987666655321 021 4589999999997 467899998764
No 104
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.42 E-value=2.8 Score=48.34 Aligned_cols=42 Identities=36% Similarity=0.894 Sum_probs=35.7
Q ss_pred CCCcccccCCCCCCCCccEEeccCCccchhhHHHHHhcCCCCCccCCCC
Q 005286 655 FEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSI 703 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~eI 703 (704)
....|.||+++. ..+..+|. |.-|+.+|+..+..||+|+..+
T Consensus 478 ~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~ 519 (543)
T KOG0802|consen 478 PNDVCAICYQEM----SARITPCS---HALCLRKWLYVQEVCPLCHTYM 519 (543)
T ss_pred ccCcchHHHHHH----Hhcccccc---chhHHHhhhhhccccCCCchhh
Confidence 367899999997 45677888 9999999999999999997643
No 105
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=60.90 E-value=5.7 Score=40.40 Aligned_cols=40 Identities=35% Similarity=0.800 Sum_probs=28.3
Q ss_pred CCcccccCCC-----CCCCCccEEeccCCccchhhHHHHHhcCCCCCccC
Q 005286 656 EEACAICLDN-----PSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCK 700 (704)
Q Consensus 656 eetCsICLEe-----F~~Gd~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR 700 (704)
...|-||-.+ |.....++.-.|+-+||..|.. +..||-|-
T Consensus 152 GfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~-----~~~CpkC~ 196 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR-----KKSCPKCA 196 (202)
T ss_pred CCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC-----CCCCCCcH
Confidence 5678999753 4443334444599999999966 27799993
No 106
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=60.29 E-value=6.3 Score=38.66 Aligned_cols=46 Identities=33% Similarity=0.661 Sum_probs=33.6
Q ss_pred CCCcccccCCCCCCCCccEEe-c---cCCccchhhHHHHHh---cCCCCCccCCCC
Q 005286 655 FEEACAICLDNPSIGDSIRHL-P---CLHKFHKDCIDPWLS---RRPSCPVCKSSI 703 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvL-P---CgHvFH~dCI~~WLk---~k~SCPVCR~eI 703 (704)
.-.+|.||.|...+. +-| | ||-..|.-|--...+ ....||+|+.+.
T Consensus 79 ~lYeCnIC~etS~ee---~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSF 131 (140)
T PF05290_consen 79 KLYECNICKETSAEE---RFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSF 131 (140)
T ss_pred CceeccCcccccchh---hcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccc
Confidence 567899999986544 223 3 899999988555443 577899999864
No 107
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.17 E-value=5.5 Score=44.43 Aligned_cols=44 Identities=20% Similarity=0.446 Sum_probs=31.3
Q ss_pred CCcccccCCCCCCCC--ccEEeccCCccchhhHHHHHhcCCCCCcc
Q 005286 656 EEACAICLDNPSIGD--SIRHLPCLHKFHKDCIDPWLSRRPSCPVC 699 (704)
Q Consensus 656 eetCsICLEeF~~Gd--~VrvLPCgHvFH~dCI~~WLk~k~SCPVC 699 (704)
-..|++|.-.+.... ..++-.|+|.|++.|...|...+..|.-|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccCc
Confidence 356888876654333 23333499999999999999888877555
No 108
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.09 E-value=6 Score=43.18 Aligned_cols=27 Identities=19% Similarity=0.721 Sum_probs=21.3
Q ss_pred cCCccchhhHHHHHh-------------cCCCCCccCCCC
Q 005286 677 CLHKFHKDCIDPWLS-------------RRPSCPVCKSSI 703 (704)
Q Consensus 677 CgHvFH~dCI~~WLk-------------~k~SCPVCR~eI 703 (704)
|.-.+|.+|+-+|+. ++-+||.||+.+
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~f 364 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNF 364 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhce
Confidence 667788999999874 345799999864
No 109
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=52.65 E-value=14 Score=26.41 Aligned_cols=36 Identities=22% Similarity=0.480 Sum_probs=25.0
Q ss_pred ccccCCCCCCCCccEEeccCCccchhhHHHHHhcCCCCCccCCCC
Q 005286 659 CAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSI 703 (704)
Q Consensus 659 CsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~eI 703 (704)
|..|-+.+...+.. ...=+..||..| ..|..|...|
T Consensus 2 C~~C~~~i~~~~~~-~~~~~~~~H~~C--------f~C~~C~~~L 37 (39)
T smart00132 2 CAGCGKPIRGGELV-LRALGKVWHPEC--------FKCSKCGKPL 37 (39)
T ss_pred ccccCCcccCCcEE-EEeCCccccccC--------CCCcccCCcC
Confidence 78888877665222 223478999988 5688887766
No 110
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=50.90 E-value=6.4 Score=41.27 Aligned_cols=42 Identities=36% Similarity=0.809 Sum_probs=34.9
Q ss_pred CCcccccCCCCCCCCccEEeccCCccchhhHHHHHhcCCCCCcc
Q 005286 656 EEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVC 699 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k~SCPVC 699 (704)
-..|.+|-+-...| ++.=.|+-.||..||..+|.....||.|
T Consensus 181 lk~Cn~Ch~LvIqg--~rCg~c~i~~h~~c~qty~q~~~~cphc 222 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQG--IRCGSCNIQYHRGCIQTYLQRRDICPHC 222 (235)
T ss_pred HHHHhHhHHHhhee--eccCcccchhhhHHHHHHhcccCcCCch
Confidence 36799999876655 3334588999999999999999999999
No 111
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=47.40 E-value=12 Score=41.42 Aligned_cols=45 Identities=18% Similarity=0.300 Sum_probs=36.4
Q ss_pred CCcccccCCCCCCCCccEEeccCCccchhhHHHHHhc---CCCCCccC
Q 005286 656 EEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSR---RPSCPVCK 700 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~---k~SCPVCR 700 (704)
-..|++--+.-+..+....|.|||+.-+.-+...-+. ...||.|=
T Consensus 336 ~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 336 LFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred eeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 4689998888888888899999999999888775442 45799993
No 112
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.29 E-value=13 Score=39.85 Aligned_cols=33 Identities=15% Similarity=0.177 Sum_probs=28.6
Q ss_pred CCcccccCCCCCCCCccEEeccCCccchhhHHHHHh
Q 005286 656 EEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLS 691 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk 691 (704)
-+.|+.||..+... ++.|=||+|+.+||.+++.
T Consensus 43 FdcCsLtLqPc~dP---vit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 43 FDCCSLTLQPCRDP---VITPDGYLFDREAILEYIL 75 (303)
T ss_pred cceeeeecccccCC---ccCCCCeeeeHHHHHHHHH
Confidence 46799999998876 6778899999999999875
No 114
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=40.90 E-value=9 Score=43.26 Aligned_cols=29 Identities=24% Similarity=0.566 Sum_probs=0.0
Q ss_pred ccEEeccCCccchhhHHHHHhc------CCCCCccCCC
Q 005286 671 SIRHLPCLHKFHKDCIDPWLSR------RPSCPVCKSS 702 (704)
Q Consensus 671 ~VrvLPCgHvFH~dCI~~WLk~------k~SCPVCR~e 702 (704)
.-+.|.|||++.+. .|-.. ...||+||..
T Consensus 303 P~VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 303 PWVYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp --------------------------------------
T ss_pred ceeeccccceeeec---ccccccccccccccCCCcccc
Confidence 34577899998855 88642 4579999863
No 115
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=39.90 E-value=12 Score=40.46 Aligned_cols=48 Identities=25% Similarity=0.486 Sum_probs=34.3
Q ss_pred CCcccccCCCCCCCCccEEe-c---cCCccchhhHHHHHhc---------CCCCCccCCCC
Q 005286 656 EEACAICLDNPSIGDSIRHL-P---CLHKFHKDCIDPWLSR---------RPSCPVCKSSI 703 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvL-P---CgHvFH~dCI~~WLk~---------k~SCPVCR~eI 703 (704)
...|-+|.+++...+..+.. | |.-.+|..|+-.-+.. ...||.|++.+
T Consensus 182 ~~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 182 NVECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred chhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 35799999999544433322 2 8999999999995532 45799998754
No 116
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=38.91 E-value=19 Score=43.64 Aligned_cols=40 Identities=20% Similarity=0.475 Sum_probs=29.0
Q ss_pred cccccCCCCCCCCccEEeccCCccchhhHHHHHhcCCCCCc
Q 005286 658 ACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPV 698 (704)
Q Consensus 658 tCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k~SCPV 698 (704)
.|++|--.+. |..+-.--|+|.-|.+|+.+|+....-||.
T Consensus 781 ~CtVC~~vi~-G~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 781 KCTVCDLVIR-GVDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred Cceeecceee-eeEeecccccccccHHHHHHHHhcCCCCcc
Confidence 5888865432 323323339999999999999998888876
No 117
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.91 E-value=13 Score=40.82 Aligned_cols=46 Identities=26% Similarity=0.671 Sum_probs=37.1
Q ss_pred CCcccccCCCCCCCCccEEeccCCccchhhHHHHHhcCCCCCccCCCC
Q 005286 656 EEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSI 703 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~eI 703 (704)
...|-||..-|......- .|+|.|++.|...|..+.+-||.|+..+
T Consensus 105 ~~~~~~~~g~l~vpt~~q--g~w~qf~~~~p~~~~~~~~~~~d~~~~~ 150 (324)
T KOG0824|consen 105 HDICYICYGKLTVPTRIQ--GCWHQFCYVCPKSNFAMGNDCPDCRGKI 150 (324)
T ss_pred ccceeeeeeeEEeccccc--CceeeeeecCCchhhhhhhccchhhcCc
Confidence 567999998876553221 2999999999999999999999998654
No 118
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=32.74 E-value=17 Score=30.23 Aligned_cols=38 Identities=21% Similarity=0.341 Sum_probs=19.1
Q ss_pred CCCCCcccccCCCCCCCCccEEe-ccCCccchhhHHHHH
Q 005286 653 DNFEEACAICLDNPSIGDSIRHL-PCLHKFHKDCIDPWL 690 (704)
Q Consensus 653 d~~eetCsICLEeF~~Gd~VrvL-PCgHvFH~dCI~~WL 690 (704)
+.....|.+|...|..-..-..- .||++|+..|...++
T Consensus 6 d~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 6 DSEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp GGG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 34467899999999654322222 399999999987554
No 119
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=32.44 E-value=32 Score=38.36 Aligned_cols=47 Identities=21% Similarity=0.374 Sum_probs=32.5
Q ss_pred CCcccccCCCCCCCCccEEeccCCccchhhHHHHHhcCCCCCccCCC
Q 005286 656 EEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSS 702 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~e 702 (704)
...|-.|..+.......+.-.|.++||.+|=.--=..=..||-|-..
T Consensus 330 ~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCeh~ 376 (378)
T KOG2807|consen 330 SRFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCEHK 376 (378)
T ss_pred CcceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcCCC
Confidence 45599998877766666666699999999922111234579999643
No 120
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=32.31 E-value=22 Score=27.80 Aligned_cols=43 Identities=28% Similarity=0.671 Sum_probs=28.9
Q ss_pred cccccCCCCCCCCccEEeccCCccchhhHHHHHh------cCCCCCccC
Q 005286 658 ACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLS------RRPSCPVCK 700 (704)
Q Consensus 658 tCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk------~k~SCPVCR 700 (704)
.|.||......++-+.--.|.-.||..|+..=+. ..-.||.|+
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 3889998444443333335999999999766443 245788885
No 121
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=31.79 E-value=32 Score=38.24 Aligned_cols=48 Identities=23% Similarity=0.592 Sum_probs=32.1
Q ss_pred CCcccccCCC-------------C--CCCCc-cEEeccCCccchhhHHHHHhc---------CCCCCccCCCC
Q 005286 656 EEACAICLDN-------------P--SIGDS-IRHLPCLHKFHKDCIDPWLSR---------RPSCPVCKSSI 703 (704)
Q Consensus 656 eetCsICLEe-------------F--~~Gd~-VrvLPCgHvFH~dCI~~WLk~---------k~SCPVCR~eI 703 (704)
+..|++|+.. | ..|-. -.--||||+--.+-..-|-.. +..||.|-..|
T Consensus 341 ~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L 413 (429)
T KOG3842|consen 341 ERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQL 413 (429)
T ss_pred cCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhh
Confidence 5789999975 1 11111 123479999888888889752 45799997654
No 122
>PF15295 CCDC50_N: Coiled-coil domain-containing protein 50 N-terminus
Probab=29.60 E-value=44 Score=32.78 Aligned_cols=18 Identities=39% Similarity=0.379 Sum_probs=15.5
Q ss_pred HHhhhhhhHHHHHHHHHH
Q 005286 475 IARQLEVDQMLALELQEQ 492 (704)
Q Consensus 475 ~arQiE~DE~lAReLQEQ 492 (704)
..+|.|.||++|+.|||+
T Consensus 103 ~r~~Ee~de~iA~~Lqe~ 120 (132)
T PF15295_consen 103 QRQQEEEDEEIARRLQEE 120 (132)
T ss_pred HHHHHHhhHHHHHHHHHH
Confidence 445689999999999997
No 123
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=28.29 E-value=43 Score=37.15 Aligned_cols=47 Identities=23% Similarity=0.595 Sum_probs=34.6
Q ss_pred CCcccccCCCCCCCCccEEec--cCCccchhhHHHHHhcCCCCCccCCCC
Q 005286 656 EEACAICLDNPSIGDSIRHLP--CLHKFHKDCIDPWLSRRPSCPVCKSSI 703 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLP--CgHvFH~dCI~~WLk~k~SCPVCR~eI 703 (704)
...|+||-+.....+ ...|| |++--|..|...-......||.||++.
T Consensus 249 ~~s~p~~~~~~~~~d-~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~ 297 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTD-SNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPY 297 (327)
T ss_pred CCCCCCCCCcccccc-cccccccccccchhhhhhcccccCCCCCccCCcc
Confidence 467999999874433 22444 777777778777777889999999753
No 124
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.78 E-value=34 Score=37.56 Aligned_cols=37 Identities=19% Similarity=0.388 Sum_probs=28.1
Q ss_pred CCcccccCCCCCCCCccEEec--cCCccchhhHHHHHhcC
Q 005286 656 EEACAICLDNPSIGDSIRHLP--CLHKFHKDCIDPWLSRR 693 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLP--CgHvFH~dCI~~WLk~k 693 (704)
...|.+|.|-+++...| .-| =.|.||..|-.+-++++
T Consensus 268 pLcCTLC~ERLEDTHFV-QCPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 268 PLCCTLCHERLEDTHFV-QCPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred ceeehhhhhhhccCcee-ecCCCcccceecccCHHHHHhh
Confidence 46799999998865333 222 37999999999998854
No 125
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=26.21 E-value=22 Score=40.31 Aligned_cols=48 Identities=19% Similarity=0.554 Sum_probs=0.0
Q ss_pred CCcccccCCC-------------CCCC-C--ccEEeccCCccchhhHHHHHhc---------CCCCCccCCCC
Q 005286 656 EEACAICLDN-------------PSIG-D--SIRHLPCLHKFHKDCIDPWLSR---------RPSCPVCKSSI 703 (704)
Q Consensus 656 eetCsICLEe-------------F~~G-d--~VrvLPCgHvFH~dCI~~WLk~---------k~SCPVCR~eI 703 (704)
..+|++|+.. |... . ...--||||+-=.....-|-+. +..||.|-..|
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L 400 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPL 400 (416)
T ss_dssp -------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcc
Confidence 5679999975 1111 1 1234479999989999999652 34799997765
No 126
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=25.83 E-value=36 Score=29.96 Aligned_cols=12 Identities=25% Similarity=1.046 Sum_probs=8.8
Q ss_pred ccchhhHHHHHh
Q 005286 680 KFHKDCIDPWLS 691 (704)
Q Consensus 680 vFH~dCI~~WLk 691 (704)
-||..|+.+|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999985
No 128
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.46 E-value=53 Score=35.57 Aligned_cols=46 Identities=15% Similarity=0.233 Sum_probs=32.6
Q ss_pred CCcccccCCCCCCCCccEEe-ccCCccchhhHHHHHhcCCCCCccCCCC
Q 005286 656 EEACAICLDNPSIGDSIRHL-PCLHKFHKDCIDPWLSRRPSCPVCKSSI 703 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvL-PCgHvFH~dCI~~WLk~k~SCPVCR~eI 703 (704)
...|+|---+|..--....| +|||+|-..-+.+. ....|++|-...
T Consensus 111 ~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y 157 (293)
T KOG3113|consen 111 RFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAY 157 (293)
T ss_pred eeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcc
Confidence 45698887777644444444 69999998877664 267899997653
No 129
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.37 E-value=15 Score=38.66 Aligned_cols=46 Identities=33% Similarity=0.540 Sum_probs=36.4
Q ss_pred CCcccccCCCCCCC-C--ccEEec--------cCCccchhhHHHHHhcC-CCCCccCC
Q 005286 656 EEACAICLDNPSIG-D--SIRHLP--------CLHKFHKDCIDPWLSRR-PSCPVCKS 701 (704)
Q Consensus 656 eetCsICLEeF~~G-d--~VrvLP--------CgHvFH~dCI~~WLk~k-~SCPVCR~ 701 (704)
...|.||...|... . .-+++. |+|..+..|+..-+.+. -.||.|+.
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~ 264 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTW 264 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccc
Confidence 46799999999832 2 334556 99999999999998754 58999985
No 130
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=22.75 E-value=49 Score=26.87 Aligned_cols=22 Identities=27% Similarity=0.804 Sum_probs=15.2
Q ss_pred cCCccchhhHHHHHhcCCCCCcc
Q 005286 677 CLHKFHKDCIDPWLSRRPSCPVC 699 (704)
Q Consensus 677 CgHvFH~dCI~~WLk~k~SCPVC 699 (704)
|+|.|-.. |..-......||.|
T Consensus 34 Cgh~w~~~-v~~R~~~~~~CP~C 55 (55)
T PF14311_consen 34 CGHEWKAS-VNDRTRRGKGCPYC 55 (55)
T ss_pred CCCeeEcc-HhhhccCCCCCCCC
Confidence 67776655 44444677889998
No 131
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=22.17 E-value=25 Score=28.54 Aligned_cols=20 Identities=15% Similarity=0.712 Sum_probs=9.5
Q ss_pred hHHHHHh---c-CCCCCccCCCCC
Q 005286 685 CIDPWLS---R-RPSCPVCKSSIT 704 (704)
Q Consensus 685 CI~~WLk---~-k~SCPVCR~eIS 704 (704)
-+.+|+. . +..||+|..+|+
T Consensus 8 ~~~k~i~~l~~~~~~CPlC~r~l~ 31 (54)
T PF04423_consen 8 ELKKYIEELKEAKGCCPLCGRPLD 31 (54)
T ss_dssp HHHHHHHHHTT-SEE-TTT--EE-
T ss_pred HHHHHHHHHhcCCCcCCCCCCCCC
Confidence 3455554 2 338999987763
No 132
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=20.60 E-value=16 Score=39.65 Aligned_cols=37 Identities=27% Similarity=0.601 Sum_probs=29.9
Q ss_pred CCcccccCCCCCCCCccEEeccCCccchhhHHHHHhc
Q 005286 656 EEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSR 692 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~ 692 (704)
...|.+|+++|..+.....+-|--+||..|+..|++.
T Consensus 214 ~rvC~~CF~el~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (288)
T KOG1729|consen 214 IRVCDICFEELEKGARGDREDSLPVFHGKCYPNWLTT 250 (288)
T ss_pred ceecHHHHHHHhcccccchhhcccccccccccccccc
Confidence 3489999999987655556666559999999999974
No 133
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=20.40 E-value=37 Score=38.18 Aligned_cols=48 Identities=29% Similarity=0.652 Sum_probs=29.2
Q ss_pred CCCCCcccccCCCCCCCCccEEec---cCCcc--------chhhHHHHH-----hcCCCCCccCC
Q 005286 653 DNFEEACAICLDNPSIGDSIRHLP---CLHKF--------HKDCIDPWL-----SRRPSCPVCKS 701 (704)
Q Consensus 653 d~~eetCsICLEeF~~Gd~VrvLP---CgHvF--------H~dCI~~WL-----k~k~SCPVCR~ 701 (704)
++.++-|++|-+... |=.-..|. |+-.| |+.|+..-- .+.+.||.||+
T Consensus 12 edl~ElCPVCGDkVS-GYHYGLLTCESCKGFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CRF 75 (475)
T KOG4218|consen 12 EDLGELCPVCGDKVS-GYHYGLLTCESCKGFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCRF 75 (475)
T ss_pred cccccccccccCccc-cceeeeeehhhhhhHHHHHhhcCcceecccccccccchHhhccCCchhH
Confidence 345788999987643 22333554 55555 345654421 24567999996
Done!