Query 005287
Match_columns 704
No_of_seqs 406 out of 3264
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 21:04:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005287.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005287hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00993 3a0901s04IAP86 chlor 100.0 9E-220 2E-224 1819.4 59.2 687 2-695 47-756 (763)
2 PF11886 DUF3406: Domain of un 100.0 1E-131 2E-136 1001.1 28.0 273 420-692 1-273 (273)
3 cd01853 Toc34_like Toc34-like 100.0 3.2E-38 6.9E-43 327.4 21.1 242 56-298 8-249 (249)
4 TIGR00991 3a0901s02IAP34 GTP-b 100.0 2.9E-36 6.3E-41 319.2 19.1 251 77-339 36-293 (313)
5 PF04548 AIG1: AIG1 family; I 99.9 6.5E-24 1.4E-28 215.0 11.3 202 80-298 1-206 (212)
6 cd01852 AIG1 AIG1 (avrRpt2-ind 99.9 8.4E-22 1.8E-26 196.2 16.1 157 80-249 1-160 (196)
7 COG1160 Predicted GTPases [Gen 99.9 9.7E-23 2.1E-27 223.1 9.2 200 5-213 78-304 (444)
8 PF02421 FeoB_N: Ferrous iron 99.7 2.1E-17 4.6E-22 160.6 10.3 121 80-214 1-121 (156)
9 COG1159 Era GTPase [General fu 99.7 1.1E-16 2.4E-21 167.8 14.3 125 78-214 5-130 (298)
10 COG0486 ThdF Predicted GTPase 99.7 1.9E-16 4.1E-21 174.4 15.1 159 74-244 212-377 (454)
11 PF01926 MMR_HSR1: 50S ribosom 99.7 9.8E-16 2.1E-20 139.6 13.5 116 81-207 1-116 (116)
12 COG1160 Predicted GTPases [Gen 99.6 8.5E-16 1.8E-20 168.9 13.2 123 80-212 4-126 (444)
13 KOG1547 Septin CDC10 and relat 99.6 3.5E-16 7.7E-21 158.8 8.0 176 75-276 42-268 (336)
14 PF00735 Septin: Septin; Inte 99.6 1.3E-16 2.9E-21 168.7 4.9 127 78-215 3-159 (281)
15 cd01850 CDC_Septin CDC/Septin. 99.6 7.5E-16 1.6E-20 162.6 10.2 127 77-214 2-159 (276)
16 TIGR03594 GTPase_EngA ribosome 99.6 1.5E-15 3.2E-20 168.4 11.7 195 8-211 76-296 (429)
17 PRK00093 GTP-binding protein D 99.6 3.9E-15 8.6E-20 165.5 12.2 194 9-211 79-297 (435)
18 TIGR00436 era GTP-binding prot 99.6 1.4E-14 3.1E-19 151.8 14.7 119 81-211 2-120 (270)
19 COG5019 CDC3 Septin family pro 99.6 2.5E-15 5.5E-20 161.2 8.0 128 77-215 21-179 (373)
20 COG3596 Predicted GTPase [Gene 99.6 1.9E-14 4E-19 149.6 12.5 155 76-240 36-195 (296)
21 PRK03003 GTP-binding protein D 99.6 1E-14 2.2E-19 164.6 10.9 194 9-212 116-336 (472)
22 COG0218 Predicted GTPase [Gene 99.5 7.9E-14 1.7E-18 139.6 14.1 128 76-213 21-150 (200)
23 KOG1191 Mitochondrial GTPase [ 99.5 3.8E-14 8.2E-19 156.2 12.8 137 72-213 261-404 (531)
24 KOG2655 Septin family protein 99.5 3.9E-14 8.5E-19 153.0 12.3 134 75-215 17-175 (366)
25 PRK00089 era GTPase Era; Revie 99.5 1E-13 2.3E-18 146.4 14.9 123 78-211 4-126 (292)
26 cd04164 trmE TrmE (MnmE, ThdF, 99.5 2.4E-13 5.1E-18 127.2 15.0 122 80-214 2-123 (157)
27 cd04163 Era Era subfamily. Er 99.5 3E-13 6.5E-18 126.6 15.5 122 79-211 3-124 (168)
28 PRK09518 bifunctional cytidyla 99.5 3E-14 6.6E-19 168.2 10.6 195 8-212 352-575 (712)
29 TIGR03598 GTPase_YsxC ribosome 99.5 3.2E-13 7E-18 132.3 15.4 127 76-212 15-143 (179)
30 cd01894 EngA1 EngA1 subfamily. 99.5 3E-13 6.5E-18 126.7 13.3 119 83-212 1-119 (157)
31 cd01898 Obg Obg subfamily. Th 99.5 2.4E-13 5.2E-18 130.0 11.9 125 81-212 2-128 (170)
32 TIGR03594 GTPase_EngA ribosome 99.5 3.6E-13 7.7E-18 149.4 14.9 122 81-213 1-122 (429)
33 cd01895 EngA2 EngA2 subfamily. 99.5 8.1E-13 1.8E-17 125.1 14.9 125 79-212 2-127 (174)
34 PRK15494 era GTPase Era; Provi 99.4 1.1E-12 2.4E-17 142.3 14.9 124 77-211 50-173 (339)
35 PRK12298 obgE GTPase CgtA; Rev 99.4 6.7E-13 1.5E-17 146.6 12.6 124 81-211 161-288 (390)
36 KOG1423 Ras-like GTPase ERA [C 99.4 1E-12 2.2E-17 138.0 12.5 131 74-213 67-200 (379)
37 TIGR00450 mnmE_trmE_thdF tRNA 99.4 2.8E-12 6.2E-17 143.8 15.7 125 76-212 200-324 (442)
38 COG1084 Predicted GTPase [Gene 99.4 1.4E-12 3.1E-17 138.5 12.4 127 78-213 167-295 (346)
39 cd01879 FeoB Ferrous iron tran 99.4 1.9E-12 4.1E-17 121.9 11.5 115 84-212 1-115 (158)
40 cd04104 p47_IIGP_like p47 (47- 99.4 2.4E-12 5.2E-17 128.8 12.5 120 79-215 1-124 (197)
41 PRK00093 GTP-binding protein D 99.4 4.1E-12 8.9E-17 141.5 15.1 121 80-211 2-122 (435)
42 PRK03003 GTP-binding protein D 99.4 4.9E-12 1.1E-16 143.0 15.9 122 79-211 38-159 (472)
43 cd01881 Obg_like The Obg-like 99.4 1.5E-12 3.2E-17 124.8 9.8 122 84-212 1-134 (176)
44 TIGR03156 GTP_HflX GTP-binding 99.4 3.8E-12 8.3E-17 138.9 13.7 125 78-211 188-314 (351)
45 cd01897 NOG NOG1 is a nucleola 99.4 7.1E-12 1.5E-16 119.8 13.9 124 81-212 2-127 (168)
46 PRK12299 obgE GTPase CgtA; Rev 99.4 3.8E-12 8.3E-17 138.1 13.5 123 81-212 160-285 (335)
47 PRK05291 trmE tRNA modificatio 99.4 4.8E-12 1E-16 142.3 14.6 124 77-213 213-336 (449)
48 PRK00454 engB GTP-binding prot 99.4 1.3E-11 2.9E-16 121.3 15.1 127 76-212 21-149 (196)
49 PRK04213 GTP-binding protein; 99.3 1.9E-11 4.1E-16 121.4 14.1 124 78-211 8-143 (201)
50 PF05049 IIGP: Interferon-indu 99.3 4.4E-13 9.5E-18 146.4 2.5 223 78-320 34-267 (376)
51 KOG1490 GTP-binding protein CR 99.3 3.7E-12 8E-17 140.6 9.6 129 78-216 167-299 (620)
52 PRK09518 bifunctional cytidyla 99.3 1.5E-11 3.3E-16 145.5 15.5 122 79-211 275-396 (712)
53 cd00880 Era_like Era (E. coli 99.3 1.6E-11 3.6E-16 112.9 12.1 118 84-213 1-119 (163)
54 cd04171 SelB SelB subfamily. 99.3 3.3E-11 7.2E-16 113.9 14.2 114 80-211 1-117 (164)
55 PRK12297 obgE GTPase CgtA; Rev 99.3 1.4E-11 3E-16 137.4 13.4 123 81-210 160-286 (424)
56 TIGR02729 Obg_CgtA Obg family 99.3 1.4E-11 3.1E-16 133.3 13.0 126 80-212 158-287 (329)
57 cd01878 HflX HflX subfamily. 99.3 2.8E-11 6.1E-16 120.6 14.1 126 78-212 40-167 (204)
58 PRK12296 obgE GTPase CgtA; Rev 99.3 2.4E-11 5.3E-16 137.5 14.3 125 80-211 160-297 (500)
59 PRK09554 feoB ferrous iron tra 99.3 2.8E-11 6.1E-16 143.8 15.3 122 79-212 3-126 (772)
60 PRK11058 GTPase HflX; Provisio 99.3 2.1E-11 4.6E-16 136.2 13.4 122 80-211 198-322 (426)
61 cd01876 YihA_EngB The YihA (En 99.3 6E-11 1.3E-15 111.4 13.5 121 82-212 2-124 (170)
62 cd01861 Rab6 Rab6 subfamily. 99.2 1.1E-10 2.4E-15 110.6 14.0 116 80-211 1-118 (161)
63 COG0370 FeoB Fe2+ transport sy 99.2 5.7E-11 1.2E-15 136.3 13.4 125 79-217 3-127 (653)
64 cd01887 IF2_eIF5B IF2/eIF5B (i 99.2 1.5E-10 3.2E-15 110.3 13.0 111 81-211 2-115 (168)
65 cd00881 GTP_translation_factor 99.2 1.2E-10 2.7E-15 112.6 12.6 113 81-212 1-128 (189)
66 cd04119 RJL RJL (RabJ-Like) su 99.2 1.3E-10 2.8E-15 110.1 12.5 117 80-211 1-123 (168)
67 cd00154 Rab Rab family. Rab G 99.2 1.2E-10 2.5E-15 108.3 11.9 117 80-211 1-118 (159)
68 cd01896 DRG The developmentall 99.2 2.3E-10 5E-15 118.1 14.1 87 81-174 2-88 (233)
69 TIGR00231 small_GTP small GTP- 99.2 4.1E-10 8.9E-15 103.6 14.4 118 79-212 1-122 (161)
70 cd04166 CysN_ATPS CysN_ATPS su 99.2 9.4E-11 2E-15 118.3 10.8 113 81-211 1-143 (208)
71 cd04160 Arfrp1 Arfrp1 subfamil 99.2 1.4E-10 3.1E-15 110.7 11.5 115 81-211 1-120 (167)
72 cd01866 Rab2 Rab2 subfamily. 99.2 2.8E-10 6.1E-15 109.8 13.3 118 79-212 4-123 (168)
73 cd04145 M_R_Ras_like M-Ras/R-R 99.2 3.2E-10 7E-15 107.6 13.1 118 79-212 2-121 (164)
74 cd01860 Rab5_related Rab5-rela 99.2 2.8E-10 6E-15 108.1 12.5 118 79-211 1-119 (163)
75 cd01884 EF_Tu EF-Tu subfamily. 99.2 4.6E-10 9.9E-15 113.0 14.6 114 79-211 2-131 (195)
76 cd04140 ARHI_like ARHI subfami 99.2 3.3E-10 7.1E-15 108.9 13.0 118 80-212 2-122 (165)
77 cd01891 TypA_BipA TypA (tyrosi 99.2 9E-10 1.9E-14 109.4 16.4 113 80-211 3-130 (194)
78 smart00175 RAB Rab subfamily o 99.1 5.8E-10 1.3E-14 105.6 13.7 116 80-212 1-119 (164)
79 cd01863 Rab18 Rab18 subfamily. 99.1 4.3E-10 9.4E-15 106.8 12.4 118 80-211 1-119 (161)
80 cd01864 Rab19 Rab19 subfamily. 99.1 5.9E-10 1.3E-14 106.8 13.1 118 79-212 3-122 (165)
81 smart00178 SAR Sar1p-like memb 99.1 7.9E-10 1.7E-14 109.1 14.3 114 78-211 16-131 (184)
82 cd04142 RRP22 RRP22 subfamily. 99.1 5.1E-10 1.1E-14 112.4 13.1 125 80-211 1-129 (198)
83 cd01889 SelB_euk SelB subfamil 99.1 5.1E-10 1.1E-14 111.0 12.6 113 80-211 1-133 (192)
84 cd04113 Rab4 Rab4 subfamily. 99.1 5E-10 1.1E-14 106.5 12.1 117 80-212 1-119 (161)
85 cd04154 Arl2 Arl2 subfamily. 99.1 1.1E-09 2.3E-14 106.3 14.3 115 77-211 12-128 (173)
86 cd01868 Rab11_like Rab11-like. 99.1 9.2E-10 2E-14 105.1 13.6 118 79-212 3-122 (165)
87 PF00350 Dynamin_N: Dynamin fa 99.1 1.8E-10 3.9E-15 110.8 8.7 112 82-208 1-168 (168)
88 cd04138 H_N_K_Ras_like H-Ras/N 99.1 6.2E-10 1.3E-14 104.8 12.0 116 80-212 2-120 (162)
89 PLN03118 Rab family protein; P 99.1 6.4E-10 1.4E-14 112.0 12.8 118 78-212 13-134 (211)
90 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.1 1.2E-09 2.7E-14 104.5 14.1 118 79-212 2-121 (166)
91 cd04136 Rap_like Rap-like subf 99.1 6.9E-10 1.5E-14 105.2 11.9 117 80-212 2-120 (163)
92 cd00876 Ras Ras family. The R 99.1 8E-10 1.7E-14 103.8 12.2 116 81-212 1-118 (160)
93 cd01867 Rab8_Rab10_Rab13_like 99.1 1E-09 2.2E-14 105.7 12.9 116 79-212 3-122 (167)
94 cd04101 RabL4 RabL4 (Rab-like4 99.1 2E-09 4.4E-14 102.5 14.8 116 80-212 1-121 (164)
95 cd01865 Rab3 Rab3 subfamily. 99.1 9.3E-10 2E-14 105.8 12.5 116 80-212 2-120 (165)
96 cd04123 Rab21 Rab21 subfamily. 99.1 9.5E-10 2E-14 103.6 12.3 116 80-212 1-119 (162)
97 cd04157 Arl6 Arl6 subfamily. 99.1 8.9E-10 1.9E-14 104.3 12.1 116 81-211 1-117 (162)
98 cd01890 LepA LepA subfamily. 99.1 1.1E-09 2.3E-14 106.1 12.7 112 81-211 2-132 (179)
99 smart00173 RAS Ras subfamily o 99.1 9.5E-10 2.1E-14 104.7 12.2 117 80-212 1-119 (164)
100 cd01862 Rab7 Rab7 subfamily. 99.1 1.5E-09 3.2E-14 103.8 13.4 118 80-212 1-123 (172)
101 PF00009 GTP_EFTU: Elongation 99.1 6.5E-10 1.4E-14 110.1 11.2 114 79-211 3-135 (188)
102 cd04159 Arl10_like Arl10-like 99.1 1.2E-09 2.6E-14 101.7 12.2 111 82-211 2-114 (159)
103 cd04156 ARLTS1 ARLTS1 subfamil 99.1 1.7E-09 3.7E-14 102.6 13.2 111 81-211 1-114 (160)
104 cd04151 Arl1 Arl1 subfamily. 99.1 1.9E-09 4.1E-14 102.8 13.5 111 81-211 1-113 (158)
105 cd04175 Rap1 Rap1 subgroup. T 99.1 1.6E-09 3.5E-14 103.5 12.9 118 79-212 1-120 (164)
106 cd04106 Rab23_lke Rab23-like s 99.1 2.4E-09 5.2E-14 101.6 13.9 115 80-212 1-120 (162)
107 cd00878 Arf_Arl Arf (ADP-ribos 99.1 1.3E-09 2.8E-14 103.4 12.0 112 81-212 1-114 (158)
108 cd04124 RabL2 RabL2 subfamily. 99.1 1.4E-09 3.1E-14 104.4 12.4 114 80-211 1-117 (161)
109 cd01886 EF-G Elongation factor 99.1 1.3E-09 2.8E-14 115.0 13.2 112 81-211 1-129 (270)
110 cd00157 Rho Rho (Ras homology) 99.1 6.2E-10 1.3E-14 106.4 9.8 117 80-214 1-120 (171)
111 cd04112 Rab26 Rab26 subfamily. 99.1 1.8E-09 3.9E-14 107.0 13.3 117 80-212 1-120 (191)
112 CHL00071 tufA elongation facto 99.1 2.1E-09 4.5E-14 119.7 15.0 118 76-212 9-142 (409)
113 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.0 1.7E-09 3.7E-14 106.6 12.6 115 79-211 3-122 (183)
114 cd01858 NGP_1 NGP-1. Autoanti 99.0 3.3E-10 7.1E-15 109.2 7.3 57 78-137 101-157 (157)
115 TIGR00437 feoB ferrous iron tr 99.0 1.2E-09 2.6E-14 126.9 13.2 113 86-212 1-113 (591)
116 cd00879 Sar1 Sar1 subfamily. 99.0 3.6E-09 7.7E-14 103.9 14.7 114 78-211 18-133 (190)
117 cd04118 Rab24 Rab24 subfamily. 99.0 1.7E-09 3.7E-14 106.5 12.5 116 80-212 1-119 (193)
118 cd04149 Arf6 Arf6 subfamily. 99.0 3.8E-09 8.2E-14 102.8 14.3 114 78-211 8-123 (168)
119 cd04155 Arl3 Arl3 subfamily. 99.0 2.8E-09 6.1E-14 102.5 13.2 115 77-211 12-128 (173)
120 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.0 4E-09 8.7E-14 102.8 14.4 113 79-211 15-129 (174)
121 COG2262 HflX GTPases [General 99.0 1.1E-09 2.3E-14 119.8 11.3 128 78-214 191-320 (411)
122 PF08477 Miro: Miro-like prote 99.0 4E-10 8.8E-15 102.1 6.8 115 81-209 1-119 (119)
123 cd04146 RERG_RasL11_like RERG/ 99.0 1.8E-09 3.8E-14 103.5 11.2 117 81-211 1-119 (165)
124 cd04158 ARD1 ARD1 subfamily. 99.0 3.2E-09 6.9E-14 102.9 13.0 111 81-211 1-113 (169)
125 cd04109 Rab28 Rab28 subfamily. 99.0 3.9E-09 8.4E-14 106.8 14.1 117 80-211 1-122 (215)
126 cd04161 Arl2l1_Arl13_like Arl2 99.0 4.9E-09 1.1E-13 101.6 14.2 111 81-211 1-113 (167)
127 cd04122 Rab14 Rab14 subfamily. 99.0 3.2E-09 7E-14 102.0 12.7 116 79-212 2-121 (166)
128 cd04125 RabA_like RabA-like su 99.0 2.4E-09 5.2E-14 105.4 12.1 116 80-211 1-118 (188)
129 PRK12317 elongation factor 1-a 99.0 1.8E-09 3.9E-14 120.5 12.5 118 77-211 4-152 (425)
130 cd04114 Rab30 Rab30 subfamily. 99.0 5.3E-09 1.1E-13 100.1 14.0 119 78-212 6-126 (169)
131 cd04176 Rap2 Rap2 subgroup. T 99.0 2.5E-09 5.4E-14 101.9 11.7 116 80-211 2-119 (163)
132 cd04139 RalA_RalB RalA/RalB su 99.0 3.1E-09 6.7E-14 100.5 12.1 117 80-212 1-119 (164)
133 KOG3859 Septins (P-loop GTPase 99.0 1.1E-10 2.3E-15 121.3 2.2 132 76-214 39-192 (406)
134 cd04144 Ras2 Ras2 subfamily. 99.0 2.3E-09 5E-14 106.1 11.3 116 81-211 1-119 (190)
135 cd01857 HSR1_MMR1 HSR1/MMR1. 99.0 9.3E-11 2E-15 111.2 1.0 123 4-139 5-140 (141)
136 COG1162 Predicted GTPases [Gen 99.0 1.1E-10 2.3E-15 124.0 1.4 146 14-170 101-261 (301)
137 cd04115 Rab33B_Rab33A Rab33B/R 99.0 6.8E-09 1.5E-13 100.4 13.8 120 79-212 2-123 (170)
138 smart00053 DYNc Dynamin, GTPas 99.0 8.5E-09 1.8E-13 107.2 15.4 125 80-212 27-206 (240)
139 cd04177 RSR1 RSR1 subgroup. R 99.0 4.1E-09 8.9E-14 101.6 12.1 118 79-212 1-120 (168)
140 cd04116 Rab9 Rab9 subfamily. 99.0 5E-09 1.1E-13 100.7 12.6 120 78-211 4-127 (170)
141 TIGR02528 EutP ethanolamine ut 99.0 4.4E-09 9.6E-14 98.3 11.7 100 81-211 2-101 (142)
142 cd01893 Miro1 Miro1 subfamily. 99.0 4.3E-09 9.4E-14 101.4 11.9 113 80-212 1-117 (166)
143 cd04150 Arf1_5_like Arf1-Arf5- 99.0 7.8E-09 1.7E-13 99.5 13.4 112 80-211 1-114 (159)
144 PTZ00133 ADP-ribosylation fact 99.0 9E-09 2E-13 101.6 14.1 113 79-211 17-131 (182)
145 cd00877 Ran Ran (Ras-related n 99.0 2.6E-09 5.6E-14 103.5 10.0 113 80-211 1-117 (166)
146 cd04147 Ras_dva Ras-dva subfam 99.0 4.4E-09 9.5E-14 104.9 11.9 116 81-212 1-118 (198)
147 cd04170 EF-G_bact Elongation f 99.0 5.5E-09 1.2E-13 109.5 13.1 112 81-211 1-129 (268)
148 cd04127 Rab27A Rab27a subfamil 99.0 8.7E-09 1.9E-13 100.0 13.6 117 79-212 4-134 (180)
149 PTZ00369 Ras-like protein; Pro 99.0 5.3E-09 1.1E-13 103.4 12.2 118 78-211 4-123 (189)
150 cd04132 Rho4_like Rho4-like su 99.0 5.7E-09 1.2E-13 102.2 12.2 114 80-212 1-119 (187)
151 cd04178 Nucleostemin_like Nucl 99.0 1.2E-09 2.6E-14 108.0 7.2 58 77-137 115-172 (172)
152 cd04105 SR_beta Signal recogni 99.0 8.5E-09 1.8E-13 104.0 13.5 116 81-212 2-123 (203)
153 smart00177 ARF ARF-like small 99.0 1.2E-08 2.6E-13 99.8 14.1 113 79-211 13-127 (175)
154 cd04107 Rab32_Rab38 Rab38/Rab3 98.9 5.6E-09 1.2E-13 104.2 11.9 116 80-211 1-123 (201)
155 cd00882 Ras_like_GTPase Ras-li 98.9 5E-09 1.1E-13 94.7 10.6 115 84-213 1-117 (157)
156 cd04168 TetM_like Tet(M)-like 98.9 6.3E-09 1.4E-13 107.8 12.6 112 81-211 1-129 (237)
157 TIGR02836 spore_IV_A stage IV 98.9 3.7E-09 8E-14 116.3 11.3 130 77-212 15-194 (492)
158 cd04137 RheB Rheb (Ras Homolog 98.9 7E-09 1.5E-13 100.8 12.2 117 80-212 2-120 (180)
159 cd04110 Rab35 Rab35 subfamily. 98.9 1.4E-08 3.1E-13 101.4 14.2 116 78-211 5-123 (199)
160 PRK09601 GTP-binding protein Y 98.9 4.2E-09 9.1E-14 115.3 11.1 88 80-174 3-107 (364)
161 cd01900 YchF YchF subfamily. 98.9 3E-09 6.4E-14 112.7 9.6 85 82-173 1-102 (274)
162 COG0536 Obg Predicted GTPase [ 98.9 1.8E-09 3.8E-14 115.6 7.9 126 81-213 161-290 (369)
163 PTZ00258 GTP-binding protein; 98.9 4.6E-09 1E-13 116.0 11.4 93 75-174 17-126 (390)
164 PRK15467 ethanolamine utilizat 98.9 4.9E-09 1.1E-13 101.6 10.3 102 81-211 3-104 (158)
165 KOG1489 Predicted GTP-binding 98.9 3.5E-09 7.6E-14 112.3 9.7 125 80-211 197-325 (366)
166 PLN03127 Elongation factor Tu; 98.9 9.1E-09 2E-13 115.9 13.7 118 75-211 57-190 (447)
167 PLN03110 Rab GTPase; Provision 98.9 9.4E-09 2E-13 104.4 12.2 118 78-211 11-130 (216)
168 PRK12735 elongation factor Tu; 98.9 1.2E-08 2.7E-13 113.1 14.0 119 74-211 7-141 (396)
169 cd04162 Arl9_Arfrp2_like Arl9/ 98.9 1.8E-08 3.8E-13 97.6 13.3 111 82-211 2-112 (164)
170 cd04108 Rab36_Rab34 Rab34/Rab3 98.9 1.1E-08 2.3E-13 99.8 11.8 115 81-211 2-119 (170)
171 cd04141 Rit_Rin_Ric Rit/Rin/Ri 98.9 2.2E-08 4.7E-13 97.8 13.8 116 79-211 2-120 (172)
172 cd04169 RF3 RF3 subfamily. Pe 98.9 1.9E-08 4.1E-13 106.1 14.2 113 80-211 3-136 (267)
173 PLN00223 ADP-ribosylation fact 98.9 3.1E-08 6.7E-13 97.9 14.8 114 78-211 16-131 (181)
174 smart00174 RHO Rho (Ras homolo 98.9 6E-09 1.3E-13 100.4 9.5 112 82-212 1-116 (174)
175 cd04148 RGK RGK subfamily. Th 98.9 1.2E-08 2.6E-13 104.1 12.1 118 80-212 1-120 (221)
176 cd01883 EF1_alpha Eukaryotic e 98.9 1.8E-08 3.9E-13 102.7 13.1 115 81-212 1-151 (219)
177 PRK00007 elongation factor G; 98.9 1.8E-08 4E-13 119.2 14.8 115 79-212 10-141 (693)
178 PRK12289 GTPase RsgA; Reviewed 98.9 8.9E-10 1.9E-14 120.4 3.5 59 81-142 174-239 (352)
179 PRK05506 bifunctional sulfate 98.9 1.8E-08 3.9E-13 118.1 14.3 119 76-212 21-171 (632)
180 PRK12736 elongation factor Tu; 98.9 1.5E-08 3.3E-13 112.3 13.0 119 74-211 7-141 (394)
181 cd04117 Rab15 Rab15 subfamily. 98.9 3.1E-08 6.7E-13 95.2 13.5 116 80-212 1-119 (161)
182 PLN03108 Rab family protein; P 98.9 2.2E-08 4.8E-13 101.2 13.1 118 78-211 5-124 (210)
183 TIGR00485 EF-Tu translation el 98.9 3.6E-08 7.7E-13 109.3 15.8 120 74-212 7-142 (394)
184 PLN03071 GTP-binding nuclear p 98.9 1.9E-08 4E-13 102.6 12.5 119 77-211 11-130 (219)
185 cd04111 Rab39 Rab39 subfamily. 98.9 2.2E-08 4.8E-13 101.5 12.9 119 79-212 2-123 (211)
186 TIGR00484 EF-G translation elo 98.9 1.5E-08 3.3E-13 119.8 13.2 113 80-211 11-140 (689)
187 PRK00049 elongation factor Tu; 98.9 2E-08 4.4E-13 111.4 13.4 118 75-211 8-141 (396)
188 PRK05306 infB translation init 98.9 4.2E-08 9E-13 116.9 16.8 116 76-211 287-402 (787)
189 cd04143 Rhes_like Rhes_like su 98.9 2.2E-08 4.7E-13 104.4 12.8 118 80-212 1-127 (247)
190 cd01892 Miro2 Miro2 subfamily. 98.9 4E-08 8.8E-13 95.6 13.8 116 78-211 3-121 (169)
191 PRK12739 elongation factor G; 98.8 1.9E-08 4.2E-13 119.0 13.6 115 79-212 8-139 (691)
192 cd01888 eIF2_gamma eIF2-gamma 98.8 3E-08 6.6E-13 99.8 13.0 115 80-211 1-150 (203)
193 cd04135 Tc10 TC10 subfamily. 98.8 2E-08 4.4E-13 96.7 11.3 113 80-211 1-117 (174)
194 cd01874 Cdc42 Cdc42 subfamily. 98.8 3.3E-08 7.2E-13 96.9 12.7 113 80-211 2-118 (175)
195 TIGR00475 selB selenocysteine- 98.8 2.7E-08 5.9E-13 115.5 13.7 114 80-212 1-117 (581)
196 PLN03126 Elongation factor Tu; 98.8 4.9E-08 1.1E-12 110.9 15.4 119 75-212 77-211 (478)
197 cd01885 EF2 EF2 (for archaea a 98.8 3.8E-08 8.2E-13 101.3 13.2 112 81-211 2-138 (222)
198 PRK09866 hypothetical protein; 98.8 4.2E-08 9.2E-13 112.9 14.7 73 127-211 230-302 (741)
199 cd04167 Snu114p Snu114p subfam 98.8 3.3E-08 7.2E-13 100.0 12.5 113 81-212 2-137 (213)
200 cd01849 YlqF_related_GTPase Yl 98.8 7.1E-09 1.5E-13 99.8 7.2 58 77-137 98-155 (155)
201 cd01870 RhoA_like RhoA-like su 98.8 2.5E-08 5.4E-13 96.2 11.0 114 80-212 2-119 (175)
202 cd04120 Rab12 Rab12 subfamily. 98.8 5.6E-08 1.2E-12 98.4 13.4 114 80-211 1-118 (202)
203 cd04130 Wrch_1 Wrch-1 subfamil 98.8 3.1E-08 6.8E-13 96.0 11.1 115 80-212 1-118 (173)
204 cd04126 Rab20 Rab20 subfamily. 98.8 3.7E-08 7.9E-13 101.1 12.1 113 80-212 1-114 (220)
205 PRK05124 cysN sulfate adenylyl 98.8 7.1E-08 1.5E-12 109.5 15.6 117 77-211 25-173 (474)
206 cd04165 GTPBP1_like GTPBP1-lik 98.8 2E-08 4.4E-13 103.2 9.6 114 81-211 1-151 (224)
207 cd04134 Rho3 Rho3 subfamily. 98.8 2.6E-08 5.6E-13 98.6 10.0 113 81-212 2-118 (189)
208 PRK09563 rbgA GTPase YlqF; Rev 98.8 1.7E-08 3.6E-13 107.4 9.0 136 3-142 17-181 (287)
209 cd01855 YqeH YqeH. YqeH is an 98.8 7.1E-09 1.5E-13 102.8 5.4 57 78-137 126-190 (190)
210 cd01871 Rac1_like Rac1-like su 98.8 8.7E-08 1.9E-12 93.9 12.7 113 80-211 2-118 (174)
211 cd04121 Rab40 Rab40 subfamily. 98.8 1.5E-07 3.3E-12 94.1 14.7 116 78-211 5-123 (189)
212 PRK12288 GTPase RsgA; Reviewed 98.8 1.8E-08 3.9E-13 110.1 8.6 82 81-165 207-297 (347)
213 TIGR00487 IF-2 translation ini 98.8 7E-08 1.5E-12 112.1 13.7 115 77-211 85-200 (587)
214 CHL00189 infB translation init 98.7 7.2E-08 1.6E-12 114.1 13.9 115 77-211 242-360 (742)
215 TIGR03596 GTPase_YlqF ribosome 98.7 2.3E-08 4.9E-13 105.8 8.7 63 77-142 116-178 (276)
216 PF03193 DUF258: Protein of un 98.7 3.4E-09 7.4E-14 103.9 2.2 61 80-143 36-103 (161)
217 TIGR02034 CysN sulfate adenyly 98.7 1.1E-07 2.4E-12 106.0 14.4 114 80-211 1-146 (406)
218 COG1161 Predicted GTPases [Gen 98.7 1.4E-08 3E-13 109.9 7.1 63 77-142 130-192 (322)
219 TIGR00157 ribosome small subun 98.7 2.2E-08 4.9E-13 104.3 7.8 87 80-170 121-216 (245)
220 COG1163 DRG Predicted GTPase [ 98.7 2.2E-08 4.8E-13 106.7 7.5 91 78-175 62-152 (365)
221 cd01851 GBP Guanylate-binding 98.7 3.2E-07 6.9E-12 94.4 15.7 126 80-213 8-149 (224)
222 cd04131 Rnd Rnd subfamily. Th 98.7 1E-07 2.3E-12 94.0 11.6 113 80-211 2-118 (178)
223 TIGR01394 TypA_BipA GTP-bindin 98.7 1.2E-07 2.7E-12 110.2 13.7 112 81-211 3-129 (594)
224 TIGR00483 EF-1_alpha translati 98.7 2.3E-07 4.9E-12 103.8 15.3 118 77-211 5-154 (426)
225 PF10662 PduV-EutP: Ethanolami 98.7 7.6E-08 1.6E-12 92.6 9.9 100 81-211 3-102 (143)
226 cd01856 YlqF YlqF. Proteins o 98.7 4E-08 8.7E-13 96.2 7.4 59 77-138 113-171 (171)
227 PRK09602 translation-associate 98.7 9.5E-08 2.1E-12 106.2 11.0 88 80-174 2-113 (396)
228 PLN00023 GTP-binding protein; 98.7 3.7E-07 8.1E-12 98.7 15.1 124 76-212 18-165 (334)
229 cd04128 Spg1 Spg1p. Spg1p (se 98.7 3.4E-07 7.3E-12 90.7 13.7 113 80-211 1-117 (182)
230 cd01899 Ygr210 Ygr210 subfamil 98.7 1.1E-07 2.3E-12 103.0 10.9 87 82-175 1-111 (318)
231 PRK10512 selenocysteinyl-tRNA- 98.7 2.2E-07 4.7E-12 108.6 14.0 114 80-211 1-117 (614)
232 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.7 2.8E-07 6.1E-12 91.6 12.8 115 78-211 4-122 (182)
233 cd01854 YjeQ_engC YjeQ/EngC. 98.6 1.8E-08 4E-13 107.2 4.3 82 80-164 162-252 (287)
234 TIGR03597 GTPase_YqeH ribosome 98.6 5.8E-08 1.3E-12 106.6 8.2 58 80-140 155-217 (360)
235 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.6 2.9E-07 6.4E-12 95.3 12.9 115 78-211 12-130 (232)
236 PRK10218 GTP-binding protein; 98.6 2.5E-07 5.4E-12 107.8 13.6 113 80-211 6-133 (607)
237 TIGR00491 aIF-2 translation in 98.6 2.5E-07 5.3E-12 107.6 13.3 114 79-212 4-135 (590)
238 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.6 3.7E-07 8.1E-12 93.9 13.1 114 80-212 2-119 (222)
239 cd01875 RhoG RhoG subfamily. 98.6 3.2E-07 6.9E-12 91.2 12.1 114 79-211 3-120 (191)
240 PF00071 Ras: Ras family; Int 98.6 2E-07 4.4E-12 88.5 10.2 115 81-212 1-118 (162)
241 COG1100 GTPase SAR1 and relate 98.6 4.4E-07 9.6E-12 90.9 12.9 118 80-212 6-125 (219)
242 PTZ00141 elongation factor 1- 98.6 9E-07 2E-11 99.9 16.7 118 77-211 5-158 (446)
243 cd01882 BMS1 Bms1. Bms1 is an 98.6 3.6E-07 7.8E-12 93.9 12.4 110 76-212 36-147 (225)
244 TIGR00503 prfC peptide chain r 98.6 4.2E-07 9.2E-12 104.5 14.1 116 77-211 9-145 (527)
245 cd04102 RabL3 RabL3 (Rab-like3 98.6 4.5E-07 9.7E-12 92.0 12.6 118 80-212 1-143 (202)
246 TIGR01393 lepA GTP-binding pro 98.6 3.1E-07 6.7E-12 107.0 12.8 112 81-211 5-135 (595)
247 cd04129 Rho2 Rho2 subfamily. 98.6 4.3E-07 9.4E-12 89.7 11.6 113 80-211 2-118 (187)
248 PRK13351 elongation factor G; 98.6 4.7E-07 1E-11 107.2 13.5 115 78-211 7-138 (687)
249 PF00025 Arf: ADP-ribosylation 98.6 3.5E-07 7.6E-12 90.0 10.3 115 77-211 12-128 (175)
250 PTZ00416 elongation factor 2; 98.6 5.6E-07 1.2E-11 108.7 14.1 114 79-211 19-157 (836)
251 cd04133 Rop_like Rop subfamily 98.6 4.2E-07 9.2E-12 89.9 10.8 114 80-212 2-119 (176)
252 PTZ00132 GTP-binding nuclear p 98.5 1.1E-06 2.3E-11 88.8 13.0 119 77-211 7-126 (215)
253 PRK00098 GTPase RsgA; Reviewed 98.5 2.9E-07 6.2E-12 98.6 9.1 84 79-165 164-256 (298)
254 PRK00741 prfC peptide chain re 98.5 8.9E-07 1.9E-11 101.9 13.5 116 77-211 8-144 (526)
255 cd04103 Centaurin_gamma Centau 98.5 6.7E-07 1.5E-11 86.5 10.6 109 80-211 1-112 (158)
256 PRK13796 GTPase YqeH; Provisio 98.5 1.3E-07 2.9E-12 104.0 6.3 59 79-140 160-223 (365)
257 TIGR03680 eif2g_arch translati 98.5 9.4E-07 2E-11 98.5 12.5 118 78-212 3-148 (406)
258 PRK04004 translation initiatio 98.5 1.1E-06 2.4E-11 102.3 13.3 114 78-211 5-136 (586)
259 PLN00116 translation elongatio 98.5 1.6E-06 3.5E-11 104.9 14.7 115 79-212 19-164 (843)
260 cd01859 MJ1464 MJ1464. This f 98.5 3.9E-07 8.5E-12 87.4 7.4 58 77-137 99-156 (156)
261 PRK05433 GTP-binding protein L 98.4 1.5E-06 3.2E-11 101.5 13.4 113 80-211 8-139 (600)
262 PRK04000 translation initiatio 98.4 1.5E-06 3.2E-11 97.2 12.7 122 74-212 4-153 (411)
263 TIGR00490 aEF-2 translation el 98.4 9.2E-07 2E-11 105.3 11.3 115 79-212 19-152 (720)
264 KOG2486 Predicted GTPase [Gene 98.4 1.4E-06 3E-11 91.5 10.9 126 76-212 133-262 (320)
265 TIGR01425 SRP54_euk signal rec 98.4 5.3E-06 1.1E-10 93.0 16.3 121 78-213 99-254 (429)
266 smart00176 RAN Ran (Ras-relate 98.4 1.7E-06 3.7E-11 87.5 11.3 109 85-211 1-112 (200)
267 PRK07560 elongation factor EF- 98.4 2.3E-06 4.9E-11 102.2 13.3 115 79-212 20-153 (731)
268 PRK14722 flhF flagellar biosyn 98.4 1.7E-06 3.7E-11 95.5 10.5 127 77-212 135-295 (374)
269 PRK12740 elongation factor G; 98.4 2.3E-06 4.9E-11 101.1 12.2 108 85-211 1-125 (668)
270 PF09439 SRPRB: Signal recogni 98.3 1E-06 2.2E-11 88.1 7.6 116 80-212 4-126 (181)
271 PF04670 Gtr1_RagA: Gtr1/RagA 98.3 5.2E-06 1.1E-10 86.2 12.9 123 81-212 1-125 (232)
272 KOG1424 Predicted GTP-binding 98.3 5.4E-07 1.2E-11 100.9 5.8 62 79-143 314-375 (562)
273 PRK12727 flagellar biosynthesi 98.3 2.7E-06 5.9E-11 97.1 11.5 84 7-101 289-372 (559)
274 COG0012 Predicted GTPase, prob 98.3 2.1E-06 4.5E-11 93.7 9.5 91 79-176 2-110 (372)
275 cd01873 RhoBTB RhoBTB subfamil 98.3 5.5E-06 1.2E-10 83.3 11.4 114 79-211 2-133 (195)
276 KOG0073 GTP-binding ADP-ribosy 98.3 1.1E-05 2.4E-10 79.0 12.4 114 78-211 15-130 (185)
277 PF00448 SRP54: SRP54-type pro 98.3 5.6E-07 1.2E-11 90.9 3.4 118 80-212 2-154 (196)
278 PRK11889 flhF flagellar biosyn 98.2 8.5E-06 1.9E-10 90.3 11.9 120 78-212 240-391 (436)
279 COG1419 FlhF Flagellar GTP-bin 98.2 9.3E-06 2E-10 89.7 12.0 119 79-212 203-352 (407)
280 TIGR00092 GTP-binding protein 98.2 5.5E-06 1.2E-10 91.1 9.9 89 80-174 3-108 (368)
281 PLN00043 elongation factor 1-a 98.2 2.7E-05 5.9E-10 88.1 15.2 119 77-211 5-158 (447)
282 KOG0084 GTPase Rab1/YPT1, smal 98.2 1.5E-05 3.3E-10 80.1 11.5 118 77-212 7-128 (205)
283 PRK14721 flhF flagellar biosyn 98.2 1.8E-05 3.9E-10 88.7 12.9 120 78-212 190-340 (420)
284 KOG2484 GTPase [General functi 98.1 7.2E-07 1.6E-11 97.4 1.7 66 75-143 248-313 (435)
285 PRK13768 GTPase; Provisional 98.1 5.6E-06 1.2E-10 86.7 7.5 82 127-214 97-178 (253)
286 PRK01889 GTPase RsgA; Reviewed 98.1 6.3E-07 1.4E-11 98.4 0.4 119 14-142 133-262 (356)
287 PRK12726 flagellar biosynthesi 98.1 1.4E-05 3.1E-10 88.2 10.5 121 77-212 204-356 (407)
288 KOG2485 Conserved ATP/GTP bind 98.1 5.4E-06 1.2E-10 88.4 6.8 69 76-144 140-213 (335)
289 TIGR03348 VI_IcmF type VI secr 98.1 1.7E-05 3.7E-10 99.2 12.1 124 81-211 113-256 (1169)
290 KOG0395 Ras-related GTPase [Ge 98.1 1.1E-05 2.3E-10 81.7 8.5 119 78-212 2-122 (196)
291 PRK14974 cell division protein 98.1 1E-05 2.2E-10 88.2 8.5 121 77-212 138-293 (336)
292 TIGR00064 ftsY signal recognit 98.0 4.2E-05 9.2E-10 81.2 12.7 120 78-212 71-231 (272)
293 PRK14723 flhF flagellar biosyn 98.0 3.2E-05 7E-10 91.9 12.6 121 79-212 185-337 (767)
294 KOG0078 GTP-binding protein SE 98.0 5.3E-05 1.2E-09 76.9 12.4 119 76-212 9-131 (207)
295 KOG1491 Predicted GTP-binding 98.0 1.8E-05 3.9E-10 85.3 9.1 91 77-174 18-125 (391)
296 COG2229 Predicted GTPase [Gene 98.0 6.8E-05 1.5E-09 74.7 12.2 118 78-213 9-136 (187)
297 KOG1954 Endocytosis/signaling 98.0 1.9E-05 4.1E-10 85.7 8.7 131 76-213 55-226 (532)
298 KOG0094 GTPase Rab6/YPT6/Ryh1, 98.0 4.1E-05 8.8E-10 77.0 10.3 118 79-214 22-144 (221)
299 KOG0092 GTPase Rab5/YPT51 and 98.0 1.5E-05 3.3E-10 79.7 6.9 119 78-213 4-125 (200)
300 COG5256 TEF1 Translation elong 98.0 6.4E-05 1.4E-09 83.0 12.1 119 77-212 5-159 (428)
301 KOG0410 Predicted GTP binding 98.0 2.6E-05 5.7E-10 83.6 8.8 128 77-212 176-308 (410)
302 PRK10416 signal recognition pa 97.9 7.7E-05 1.7E-09 81.0 12.3 120 78-212 113-273 (318)
303 KOG1486 GTP-binding protein DR 97.9 1.3E-05 2.9E-10 83.1 5.9 107 78-194 61-167 (364)
304 KOG1707 Predicted Ras related/ 97.9 4.2E-05 9.1E-10 87.1 10.2 122 75-212 5-129 (625)
305 COG4917 EutP Ethanolamine util 97.9 1.8E-05 3.8E-10 74.5 6.0 102 81-212 3-104 (148)
306 PRK09435 membrane ATPase/prote 97.9 6.3E-05 1.4E-09 82.0 10.7 24 77-100 54-77 (332)
307 PTZ00327 eukaryotic translatio 97.9 0.00013 2.8E-09 82.9 13.4 119 77-212 32-185 (460)
308 KOG0447 Dynamin-like GTP bindi 97.9 0.00023 4.9E-09 80.4 14.7 128 79-212 308-493 (980)
309 KOG0448 Mitofusin 1 GTPase, in 97.8 5.2E-05 1.1E-09 87.6 9.5 119 77-212 107-275 (749)
310 PRK05703 flhF flagellar biosyn 97.8 0.00012 2.6E-09 82.4 11.8 119 79-212 221-371 (424)
311 KOG0080 GTPase Rab18, small G 97.8 9.4E-05 2E-09 72.3 8.8 116 78-211 10-130 (209)
312 KOG0394 Ras-related GTPase [Ge 97.8 6.8E-05 1.5E-09 74.8 7.8 116 77-211 7-131 (210)
313 PRK12724 flagellar biosynthesi 97.8 0.00016 3.5E-09 81.0 11.5 119 79-212 223-373 (432)
314 COG0480 FusA Translation elong 97.8 0.0002 4.4E-09 84.9 13.0 116 78-212 9-142 (697)
315 PRK12723 flagellar biosynthesi 97.8 9.1E-05 2E-09 82.4 9.3 120 78-212 173-326 (388)
316 KOG2423 Nucleolar GTPase [Gene 97.7 1.1E-05 2.4E-10 88.0 1.4 63 76-141 304-366 (572)
317 KOG0087 GTPase Rab11/YPT3, sma 97.7 9.7E-05 2.1E-09 75.1 7.6 121 75-212 10-133 (222)
318 KOG0098 GTPase Rab2, small G p 97.7 0.00036 7.9E-09 69.9 11.4 117 79-214 6-127 (216)
319 KOG3883 Ras family small GTPas 97.7 0.00038 8.1E-09 67.7 11.1 126 77-215 7-135 (198)
320 COG3523 IcmF Type VI protein s 97.7 0.00014 3.1E-09 89.7 9.8 126 81-212 127-270 (1188)
321 KOG0095 GTPase Rab30, small G 97.6 0.00045 9.8E-09 66.8 11.0 119 77-213 5-127 (213)
322 PRK06995 flhF flagellar biosyn 97.6 0.00043 9.2E-09 79.0 11.9 24 79-102 256-279 (484)
323 KOG1145 Mitochondrial translat 97.6 0.00055 1.2E-08 77.8 12.5 118 74-211 148-266 (683)
324 PRK06731 flhF flagellar biosyn 97.6 0.00013 2.8E-09 77.5 7.0 119 79-212 75-225 (270)
325 PF03029 ATP_bind_1: Conserved 97.6 0.0001 2.2E-09 76.8 6.2 77 128-212 92-170 (238)
326 cd03112 CobW_like The function 97.6 0.00034 7.4E-09 68.1 9.3 21 82-102 3-23 (158)
327 TIGR00750 lao LAO/AO transport 97.6 0.00032 6.8E-09 75.3 9.8 25 77-101 32-56 (300)
328 KOG1532 GTPase XAB1, interacts 97.5 0.00018 3.8E-09 75.9 6.8 27 75-101 15-41 (366)
329 KOG0075 GTP-binding ADP-ribosy 97.5 0.00029 6.2E-09 68.2 7.2 114 79-211 20-135 (186)
330 PRK00771 signal recognition pa 97.5 0.00043 9.3E-09 78.2 9.9 121 77-212 93-246 (437)
331 KOG0079 GTP-binding protein H- 97.5 0.00042 9E-09 67.1 8.2 113 80-211 9-125 (198)
332 PRK10867 signal recognition pa 97.4 0.00052 1.1E-08 77.5 9.9 120 78-212 99-254 (433)
333 COG0532 InfB Translation initi 97.4 0.00097 2.1E-08 75.9 11.6 114 78-211 4-120 (509)
334 KOG0458 Elongation factor 1 al 97.4 0.0012 2.6E-08 75.6 11.4 118 78-212 176-329 (603)
335 cd03115 SRP The signal recogni 97.3 0.0026 5.6E-08 62.1 12.2 72 126-212 82-153 (173)
336 KOG0781 Signal recognition par 97.3 0.00017 3.6E-09 80.8 3.4 126 76-211 375-543 (587)
337 KOG0093 GTPase Rab3, small G p 97.3 0.0013 2.8E-08 63.7 9.0 117 79-211 21-139 (193)
338 COG1217 TypA Predicted membran 97.3 0.0013 2.8E-08 73.7 10.1 112 81-211 7-133 (603)
339 PF03308 ArgK: ArgK protein; 97.3 0.00034 7.3E-09 73.6 5.2 23 78-100 28-50 (266)
340 KOG0090 Signal recognition par 97.3 0.0017 3.7E-08 66.5 10.0 116 79-213 38-160 (238)
341 COG0552 FtsY Signal recognitio 97.2 0.001 2.2E-08 72.2 7.8 122 76-212 136-298 (340)
342 TIGR00959 ffh signal recogniti 97.2 0.0017 3.7E-08 73.2 9.9 120 78-212 98-253 (428)
343 cd03114 ArgK-like The function 97.1 0.0026 5.6E-08 61.5 9.1 20 82-101 2-21 (148)
344 KOG0462 Elongation factor-type 97.1 0.0024 5.3E-08 72.8 9.9 116 78-212 59-191 (650)
345 PRK14845 translation initiatio 97.0 0.005 1.1E-07 76.1 12.7 103 90-212 472-592 (1049)
346 PF00004 AAA: ATPase family as 97.0 0.0034 7.3E-08 57.3 8.3 103 82-209 1-111 (132)
347 KOG0077 Vesicle coat complex C 96.8 0.0041 8.9E-08 61.5 7.9 114 78-212 19-135 (193)
348 COG1703 ArgK Putative periplas 96.8 0.0034 7.3E-08 67.3 7.8 27 74-100 46-72 (323)
349 COG0541 Ffh Signal recognition 96.8 0.01 2.2E-07 66.4 11.5 122 76-212 97-253 (451)
350 TIGR03499 FlhF flagellar biosy 96.7 0.0014 3E-08 69.9 4.5 25 78-102 193-217 (282)
351 KOG3886 GTP-binding protein [S 96.7 0.0033 7.2E-08 65.1 6.8 126 80-214 5-132 (295)
352 KOG0086 GTPase Rab4, small G p 96.7 0.0081 1.7E-07 58.6 8.7 116 78-212 8-128 (214)
353 KOG0780 Signal recognition par 96.7 0.014 3.1E-07 64.4 11.6 125 74-213 96-255 (483)
354 COG5192 BMS1 GTP-binding prote 96.6 0.011 2.3E-07 67.6 10.5 112 74-212 64-177 (1077)
355 KOG0461 Selenocysteine-specifi 96.6 0.035 7.6E-07 60.6 13.8 114 78-212 6-136 (522)
356 COG3276 SelB Selenocysteine-sp 96.6 0.0082 1.8E-07 67.2 9.3 114 81-213 2-118 (447)
357 KOG0074 GTP-binding ADP-ribosy 96.5 0.019 4.1E-07 55.5 9.8 116 77-212 15-133 (185)
358 KOG0091 GTPase Rab39, small G 96.5 0.01 2.2E-07 58.6 8.0 119 79-213 8-131 (213)
359 KOG0070 GTP-binding ADP-ribosy 96.4 0.0098 2.1E-07 59.5 7.8 114 78-211 16-131 (181)
360 KOG1487 GTP-binding protein DR 96.4 0.0033 7.2E-08 66.1 4.1 105 81-195 61-165 (358)
361 TIGR03263 guanyl_kin guanylate 96.3 0.0021 4.6E-08 62.8 2.3 55 81-137 3-57 (180)
362 COG0194 Gmk Guanylate kinase [ 96.2 0.0023 4.9E-08 64.4 1.9 53 79-134 4-56 (191)
363 KOG0071 GTP-binding ADP-ribosy 96.1 0.063 1.4E-06 52.0 11.1 114 79-212 17-132 (180)
364 COG2895 CysN GTPases - Sulfate 96.1 0.038 8.3E-07 60.6 10.6 117 78-212 5-153 (431)
365 KOG0393 Ras-related small GTPa 96.1 0.008 1.7E-07 61.2 5.1 116 78-211 3-122 (198)
366 COG4108 PrfC Peptide chain rel 96.0 0.028 6E-07 63.1 9.4 114 79-211 12-146 (528)
367 PRK14738 gmk guanylate kinase; 96.0 0.0071 1.5E-07 61.4 4.2 60 74-135 8-67 (206)
368 KOG4252 GTP-binding protein [S 96.0 0.0037 8E-08 62.4 2.0 119 77-213 18-139 (246)
369 KOG1144 Translation initiation 95.9 0.044 9.4E-07 64.6 10.5 113 79-211 475-605 (1064)
370 cd00071 GMPK Guanosine monopho 95.8 0.0073 1.6E-07 57.5 3.5 54 82-137 2-56 (137)
371 PRK14737 gmk guanylate kinase; 95.8 0.0082 1.8E-07 60.3 3.8 53 79-133 4-56 (186)
372 KOG0088 GTPase Rab21, small G 95.7 0.011 2.5E-07 57.9 4.1 119 75-211 9-131 (218)
373 COG0481 LepA Membrane GTPase L 95.7 0.074 1.6E-06 60.3 10.8 114 81-213 11-143 (603)
374 PRK00300 gmk guanylate kinase; 95.6 0.0089 1.9E-07 59.8 3.2 25 79-103 5-29 (205)
375 PF00005 ABC_tran: ABC transpo 95.6 0.01 2.2E-07 55.2 3.4 25 81-105 13-37 (137)
376 COG1341 Predicted GTPase or GT 95.6 0.041 8.8E-07 61.3 8.5 26 76-101 70-95 (398)
377 KOG0467 Translation elongation 95.6 0.044 9.5E-07 64.8 9.0 112 80-211 10-137 (887)
378 PRK08472 fliI flagellum-specif 95.6 0.011 2.5E-07 66.7 4.2 91 78-177 156-259 (434)
379 KOG0468 U5 snRNP-specific prot 95.5 0.036 7.9E-07 64.6 7.9 113 79-211 128-262 (971)
380 PF02263 GBP: Guanylate-bindin 95.5 0.036 7.8E-07 58.5 7.3 61 80-140 22-87 (260)
381 COG3840 ThiQ ABC-type thiamine 95.5 0.0099 2.2E-07 60.0 2.9 24 81-104 27-50 (231)
382 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.4 0.094 2E-06 50.2 9.5 25 80-104 27-51 (144)
383 COG1116 TauB ABC-type nitrate/ 95.4 0.011 2.4E-07 61.9 3.0 26 81-106 31-56 (248)
384 PF02492 cobW: CobW/HypB/UreG, 95.4 0.046 1E-06 54.1 7.3 116 81-212 2-155 (178)
385 PF05673 DUF815: Protein of un 95.4 0.053 1.1E-06 57.0 7.9 26 78-103 51-76 (249)
386 PF13207 AAA_17: AAA domain; P 95.3 0.015 3.2E-07 52.9 3.4 22 81-102 1-22 (121)
387 PTZ00099 rab6; Provisional 95.3 0.056 1.2E-06 53.5 7.7 70 126-211 28-98 (176)
388 KOG0076 GTP-binding ADP-ribosy 95.3 0.033 7.2E-07 55.6 5.9 120 78-211 16-139 (197)
389 KOG2749 mRNA cleavage and poly 95.2 0.13 2.8E-06 56.6 10.5 62 130-211 215-276 (415)
390 COG1136 SalX ABC-type antimicr 95.2 0.013 2.9E-07 60.7 3.0 25 81-105 33-57 (226)
391 cd01983 Fer4_NifH The Fer4_Nif 95.2 0.14 3.1E-06 43.4 9.0 46 82-140 2-47 (99)
392 cd00009 AAA The AAA+ (ATPases 95.1 0.078 1.7E-06 47.9 7.6 25 79-103 19-43 (151)
393 cd03230 ABC_DR_subfamily_A Thi 95.1 0.12 2.5E-06 50.8 9.3 25 80-104 27-51 (173)
394 KOG0097 GTPase Rab14, small G 95.0 0.15 3.2E-06 49.3 9.1 115 79-212 11-130 (215)
395 cd03110 Fer4_NifH_child This p 95.0 0.17 3.7E-06 49.5 10.0 66 125-211 91-156 (179)
396 KOG1534 Putative transcription 95.0 0.014 3E-07 60.0 2.2 76 128-212 99-178 (273)
397 cd03243 ABC_MutS_homologs The 94.9 0.082 1.8E-06 53.2 7.6 22 80-101 30-51 (202)
398 KOG0446 Vacuolar sorting prote 94.8 0.017 3.7E-07 68.5 3.0 126 80-212 30-213 (657)
399 cd01130 VirB11-like_ATPase Typ 94.8 0.021 4.7E-07 56.8 3.1 25 79-103 25-49 (186)
400 cd03111 CpaE_like This protein 94.6 0.29 6.2E-06 44.5 9.8 96 82-207 2-106 (106)
401 cd03225 ABC_cobalt_CbiO_domain 94.6 0.026 5.6E-07 56.8 3.3 24 81-104 29-52 (211)
402 PF13555 AAA_29: P-loop contai 94.6 0.028 6.1E-07 47.0 2.8 19 81-99 25-43 (62)
403 COG1618 Predicted nucleotide k 94.6 0.27 5.8E-06 48.9 10.0 24 78-101 4-27 (179)
404 cd03261 ABC_Org_Solvent_Resist 94.6 0.026 5.7E-07 57.9 3.3 24 81-104 28-51 (235)
405 COG0050 TufB GTPases - transla 94.6 0.32 6.9E-06 52.5 11.2 118 76-212 9-142 (394)
406 PRK11537 putative GTP-binding 94.5 0.22 4.7E-06 54.4 10.2 22 81-102 6-27 (318)
407 cd03222 ABC_RNaseL_inhibitor T 94.5 0.028 6E-07 56.2 3.1 26 79-104 25-50 (177)
408 PF13671 AAA_33: AAA domain; P 94.5 0.031 6.7E-07 52.2 3.2 22 82-103 2-23 (143)
409 KOG1533 Predicted GTPase [Gene 94.5 0.028 6E-07 58.7 3.0 27 81-107 4-36 (290)
410 cd03265 ABC_DrrA DrrA is the A 94.5 0.03 6.5E-07 56.9 3.3 24 80-103 27-50 (220)
411 TIGR02673 FtsE cell division A 94.4 0.031 6.8E-07 56.3 3.3 24 81-104 30-53 (214)
412 smart00382 AAA ATPases associa 94.4 0.035 7.5E-07 49.6 3.2 24 80-103 3-26 (148)
413 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.4 0.032 6.9E-07 56.5 3.3 24 81-104 32-55 (218)
414 TIGR00960 3a0501s02 Type II (G 94.4 0.031 6.8E-07 56.5 3.2 24 80-103 30-53 (216)
415 KOG0464 Elongation factor G [T 94.3 0.033 7.2E-07 61.8 3.4 114 80-212 38-168 (753)
416 TIGR03608 L_ocin_972_ABC putat 94.3 0.033 7.2E-07 55.7 3.3 23 81-103 26-48 (206)
417 cd03264 ABC_drug_resistance_li 94.3 0.03 6.6E-07 56.4 3.0 24 81-104 27-50 (211)
418 TIGR01166 cbiO cobalt transpor 94.3 0.034 7.4E-07 55.2 3.3 24 81-104 20-43 (190)
419 COG5257 GCD11 Translation init 94.3 0.09 2E-06 57.1 6.5 120 77-213 8-155 (415)
420 PRK10078 ribose 1,5-bisphospho 94.3 0.035 7.5E-07 55.2 3.2 23 81-103 4-26 (186)
421 cd03293 ABC_NrtD_SsuB_transpor 94.3 0.035 7.5E-07 56.4 3.3 24 81-104 32-55 (220)
422 cd03238 ABC_UvrA The excision 94.3 0.034 7.3E-07 55.5 3.1 22 80-101 22-43 (176)
423 cd03260 ABC_PstB_phosphate_tra 94.2 0.034 7.4E-07 56.7 3.1 24 80-103 27-50 (227)
424 cd03224 ABC_TM1139_LivF_branch 94.2 0.035 7.6E-07 56.2 3.2 25 80-104 27-51 (222)
425 cd03292 ABC_FtsE_transporter F 94.2 0.036 7.8E-07 55.8 3.3 23 81-103 29-51 (214)
426 cd03226 ABC_cobalt_CbiO_domain 94.2 0.036 7.8E-07 55.7 3.2 25 80-104 27-51 (205)
427 cd03263 ABC_subfamily_A The AB 94.2 0.037 7.9E-07 56.1 3.3 24 81-104 30-53 (220)
428 COG5258 GTPBP1 GTPase [General 94.2 0.068 1.5E-06 59.2 5.4 123 74-213 112-270 (527)
429 cd03259 ABC_Carb_Solutes_like 94.2 0.037 8E-07 55.8 3.3 24 81-104 28-51 (213)
430 COG3839 MalK ABC-type sugar tr 94.2 0.034 7.4E-07 61.0 3.2 25 81-105 31-55 (338)
431 cd03258 ABC_MetN_methionine_tr 94.2 0.037 8E-07 56.6 3.3 25 80-104 32-56 (233)
432 TIGR02211 LolD_lipo_ex lipopro 94.1 0.039 8.4E-07 56.0 3.3 24 81-104 33-56 (221)
433 PRK07261 topology modulation p 94.1 0.038 8.3E-07 54.5 3.2 22 81-102 2-23 (171)
434 TIGR02315 ABC_phnC phosphonate 94.1 0.038 8.2E-07 56.9 3.2 23 81-103 30-52 (243)
435 cd03216 ABC_Carb_Monos_I This 94.1 0.041 8.9E-07 53.6 3.3 25 80-104 27-51 (163)
436 cd03269 ABC_putative_ATPase Th 94.1 0.04 8.7E-07 55.5 3.3 25 80-104 27-51 (210)
437 TIGR02322 phosphon_PhnN phosph 94.1 0.034 7.4E-07 54.5 2.7 22 81-102 3-24 (179)
438 cd03262 ABC_HisP_GlnQ_permease 94.1 0.04 8.8E-07 55.4 3.3 24 81-104 28-51 (213)
439 cd03281 ABC_MSH5_euk MutS5 hom 94.1 0.2 4.3E-06 51.3 8.4 22 80-101 30-51 (213)
440 cd01131 PilT Pilus retraction 94.1 0.034 7.4E-07 56.1 2.7 23 81-103 3-25 (198)
441 cd03218 ABC_YhbG The ABC trans 94.1 0.041 8.8E-07 56.2 3.3 24 81-104 28-51 (232)
442 cd03283 ABC_MutS-like MutS-lik 94.0 0.13 2.7E-06 52.3 6.7 22 81-102 27-48 (199)
443 cd03235 ABC_Metallic_Cations A 94.0 0.04 8.7E-07 55.6 3.1 25 80-104 26-50 (213)
444 PRK15177 Vi polysaccharide exp 94.0 0.043 9.3E-07 55.9 3.2 25 80-104 14-38 (213)
445 cd03256 ABC_PhnC_transporter A 94.0 0.043 9.3E-07 56.3 3.2 23 81-103 29-51 (241)
446 PRK11629 lolD lipoprotein tran 94.0 0.043 9.3E-07 56.3 3.3 23 81-103 37-59 (233)
447 cd03257 ABC_NikE_OppD_transpor 94.0 0.043 9.3E-07 55.7 3.2 24 81-104 33-56 (228)
448 cd03266 ABC_NatA_sodium_export 93.9 0.044 9.5E-07 55.4 3.3 23 81-103 33-55 (218)
449 cd03268 ABC_BcrA_bacitracin_re 93.9 0.045 9.7E-07 55.1 3.3 25 80-104 27-51 (208)
450 TIGR01978 sufC FeS assembly AT 93.9 0.044 9.4E-07 56.3 3.2 24 80-103 27-50 (243)
451 PRK14242 phosphate transporter 93.9 0.043 9.2E-07 57.0 3.2 23 81-103 34-56 (253)
452 TIGR01189 ccmA heme ABC export 93.9 0.046 1E-06 54.7 3.3 24 80-103 27-50 (198)
453 PF13238 AAA_18: AAA domain; P 93.9 0.047 1E-06 49.5 3.0 21 82-102 1-21 (129)
454 PLN02796 D-glycerate 3-kinase 93.9 0.083 1.8E-06 58.2 5.4 27 77-103 98-124 (347)
455 cd03301 ABC_MalK_N The N-termi 93.9 0.046 1E-06 55.1 3.3 24 81-104 28-51 (213)
456 cd03254 ABCC_Glucan_exporter_l 93.9 0.046 9.9E-07 55.7 3.2 24 81-104 31-54 (229)
457 PRK13851 type IV secretion sys 93.9 0.044 9.6E-07 60.4 3.3 25 79-103 162-186 (344)
458 PRK11248 tauB taurine transpor 93.8 0.046 9.9E-07 57.2 3.3 25 80-104 28-52 (255)
459 PRK13539 cytochrome c biogenes 93.8 0.048 1E-06 55.1 3.3 25 80-104 29-53 (207)
460 PRK13541 cytochrome c biogenes 93.8 0.048 1E-06 54.5 3.2 25 80-104 27-51 (195)
461 cd03229 ABC_Class3 This class 93.8 0.049 1.1E-06 53.7 3.3 25 80-104 27-51 (178)
462 cd03219 ABC_Mj1267_LivG_branch 93.8 0.046 9.9E-07 56.0 3.1 23 81-103 28-50 (236)
463 PRK10908 cell division protein 93.8 0.048 1.1E-06 55.4 3.3 25 80-104 29-53 (222)
464 PRK11264 putative amino-acid A 93.8 0.048 1E-06 56.4 3.3 23 81-103 31-53 (250)
465 PRK14269 phosphate ABC transpo 93.8 0.047 1E-06 56.5 3.2 24 80-103 29-52 (246)
466 TIGR02770 nickel_nikD nickel i 93.8 0.048 1E-06 55.9 3.2 24 81-104 14-37 (230)
467 PRK10584 putative ABC transpor 93.8 0.049 1.1E-06 55.6 3.3 24 81-104 38-61 (228)
468 PRK11124 artP arginine transpo 93.8 0.049 1.1E-06 56.1 3.3 24 81-104 30-53 (242)
469 cd03215 ABC_Carb_Monos_II This 93.8 0.051 1.1E-06 53.8 3.2 25 81-105 28-52 (182)
470 cd03231 ABC_CcmA_heme_exporter 93.8 0.051 1.1E-06 54.6 3.3 25 80-104 27-51 (201)
471 PRK14247 phosphate ABC transpo 93.8 0.048 1E-06 56.5 3.2 23 81-103 31-53 (250)
472 PRK05480 uridine/cytidine kina 93.8 0.05 1.1E-06 54.9 3.3 26 77-102 4-29 (209)
473 TIGR00235 udk uridine kinase. 93.8 0.051 1.1E-06 54.9 3.3 25 78-102 5-29 (207)
474 PRK13540 cytochrome c biogenes 93.8 0.051 1.1E-06 54.5 3.3 25 80-104 28-52 (200)
475 PRK13543 cytochrome c biogenes 93.7 0.051 1.1E-06 55.2 3.3 24 81-104 39-62 (214)
476 cd03296 ABC_CysA_sulfate_impor 93.7 0.05 1.1E-06 56.0 3.2 24 81-104 30-53 (239)
477 TIGR03864 PQQ_ABC_ATP ABC tran 93.7 0.051 1.1E-06 55.9 3.3 25 80-104 28-52 (236)
478 PRK14241 phosphate transporter 93.7 0.049 1.1E-06 56.8 3.2 24 80-103 31-54 (258)
479 PRK08118 topology modulation p 93.7 0.052 1.1E-06 53.5 3.2 23 81-103 3-25 (167)
480 KOG1143 Predicted translation 93.7 0.13 2.9E-06 56.7 6.4 119 79-215 167-320 (591)
481 PRK14239 phosphate transporter 93.7 0.051 1.1E-06 56.3 3.2 22 81-102 33-54 (252)
482 cd03297 ABC_ModC_molybdenum_tr 93.7 0.053 1.1E-06 54.9 3.2 25 80-104 24-48 (214)
483 KOG4181 Uncharacterized conser 93.7 2.2 4.7E-05 47.2 15.4 25 79-103 188-212 (491)
484 cd03249 ABC_MTABC3_MDL1_MDL2 M 93.7 0.054 1.2E-06 55.6 3.3 24 80-103 30-53 (238)
485 PRK10895 lipopolysaccharide AB 93.6 0.054 1.2E-06 55.8 3.3 24 80-103 30-53 (241)
486 cd03214 ABC_Iron-Siderophores_ 93.6 0.056 1.2E-06 53.4 3.3 24 80-103 26-49 (180)
487 cd03369 ABCC_NFT1 Domain 2 of 93.6 0.054 1.2E-06 54.5 3.2 24 81-104 36-59 (207)
488 cd03287 ABC_MSH3_euk MutS3 hom 93.6 0.45 9.9E-06 49.3 10.0 22 81-102 33-54 (222)
489 PRK14262 phosphate ABC transpo 93.6 0.053 1.1E-06 56.2 3.2 23 81-103 31-53 (250)
490 COG0410 LivF ABC-type branched 93.6 0.053 1.2E-06 56.4 3.1 26 81-106 31-56 (237)
491 KOG0081 GTPase Rab27, small G 93.6 0.088 1.9E-06 51.9 4.4 21 80-100 10-30 (219)
492 COG1126 GlnQ ABC-type polar am 93.6 0.06 1.3E-06 55.7 3.5 28 80-107 29-56 (240)
493 COG0563 Adk Adenylate kinase a 93.6 0.054 1.2E-06 54.2 3.1 23 80-102 1-23 (178)
494 cd03236 ABC_RNaseL_inhibitor_d 93.6 0.055 1.2E-06 56.9 3.3 27 79-105 26-52 (255)
495 PRK15056 manganese/iron transp 93.6 0.054 1.2E-06 57.1 3.2 25 80-104 34-58 (272)
496 TIGR03410 urea_trans_UrtE urea 93.6 0.056 1.2E-06 55.2 3.2 25 80-104 27-51 (230)
497 smart00072 GuKc Guanylate kina 93.5 0.049 1.1E-06 54.1 2.7 23 81-103 4-26 (184)
498 PRK10744 pstB phosphate transp 93.5 0.055 1.2E-06 56.6 3.2 24 80-103 40-63 (260)
499 TIGR02323 CP_lyasePhnK phospho 93.5 0.059 1.3E-06 55.9 3.4 24 81-104 31-54 (253)
500 PRK14273 phosphate ABC transpo 93.5 0.056 1.2E-06 56.2 3.2 24 81-104 35-58 (254)
No 1
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=100.00 E-value=8.5e-220 Score=1819.43 Aligned_cols=687 Identities=45% Similarity=0.734 Sum_probs=644.6
Q ss_pred CCccccccchhhHHHHHHhhcCCCCchHHHHHHHHHhhhcccccccchhhhhhcccchhHHHHhhccccCCCCCCCCCeE
Q 005287 2 MDPLVKIEDLQVKFLRLLQRFGQSQDNILAVKVLYRLHLATLIRAGESDMKMVNLRSDRTRAIAREQEATGIPDLDFSIR 81 (704)
Q Consensus 2 ~~~~~ki~~~rvk~lrl~~R~G~s~ed~~VaqvL~rl~lae~~~~~~~~~~~~~lg~d~a~~ia~~~~~~~~~~~~~~lr 81 (704)
+++++|||.+|||||||++|+|++|+|.+|||||||++|+++.... ..++++.+..+|++.++.+.+++++.++
T Consensus 47 ~~~~~k~~~~rvkflrl~~Rlg~s~~~~vvaqVlyrl~l~~~~~~~------~~~s~d~a~~~a~~~ea~g~~~Ldfslr 120 (763)
T TIGR00993 47 KEKLEKLQLIRVKFLRLAQRLGQTPENSIAAQVLYRLGLLAGRQGG------GAFSLDAAKAMAEQLEAEGQDPLDFSLN 120 (763)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHhhccCcc------ccccchhhHHHHhhhhhhhccccCcceE
Confidence 3678999999999999999999999999999999999998754332 2356799999999999999999999999
Q ss_pred EEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhc
Q 005287 82 ILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRR 161 (704)
Q Consensus 82 IlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~ 161 (704)
|+|+|+||||||||||+|+|+..+.++...+.|+.+..+...+.|.+++||||||+.++.... ..+..+++.+.+++..
T Consensus 121 IvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq-~~neeILk~Ik~~Lsk 199 (763)
T TIGR00993 121 ILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQ-SKNEKILSSVKKFIKK 199 (763)
T ss_pred EEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccch-HHHHHHHHHHHHHHhc
Confidence 999999999999999999999988888777778888777778899999999999999875443 4567888888889888
Q ss_pred CCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCCCCCCCCCCcchhhhhhhccHHHHHHHHHH
Q 005287 162 SPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPEGSSGYPFSYESYVTQCTDLVQQRIHQA 241 (704)
Q Consensus 162 ~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~pde~~~~~~s~e~~i~q~~~~Lq~~I~q~ 241 (704)
+++|+||||++++..+.+..+..+++.|++.||..+|+++|||||++|.++|+++++.+.+|++|+.++.+.+|+.|++|
T Consensus 200 ~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg~ng~~~tye~fv~~rs~~Lq~~Irq~ 279 (763)
T TIGR00993 200 NPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPPDGPNGTPLSYDVFVAQRSHIVQQAIGQA 279 (763)
T ss_pred CCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCCCCCCCCCcCHHHHHhhChHHHHHHHHHh
Confidence 88999999999987765556888999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCccc-----hhhhhccCCccccCccCcccCCCccchHHHHHhhhhhhhhhhhHHhhhccccccccC-CCC-CCCCC
Q 005287 242 VSDARLEN-----QVLLVENHPQCRRNVKGEQILPNGQIWKSRFLLLCICTKVLGDANALLGFRDSIELG-PLG-NTRVP 314 (704)
Q Consensus 242 ~~d~~~~~-----pv~lVen~p~c~~N~~ge~vLP~~~~W~~~Ll~~c~s~ki~~eA~~~lk~~~~~~~~-~~~-~~~~~ 314 (704)
.++++++| |+.+|||||.|.+|..||++||+++.|+++|+++|++.+++++|+++++.++.+..+ ||. +.|+|
T Consensus 280 ~g~~~l~n~~~~~Pv~lvEN~~~C~~N~~gekVLPnG~~W~p~llllc~~~k~l~~a~~l~~~q~~~~~~~~~~~~~~~~ 359 (763)
T TIGR00993 280 VGDLRLMNPNLMNPVSLVENHPACRKNRAGQKVLPNGQVWKPHLLLLCYSSKILSEANALLKLQENIDGRRPFGFRSRAP 359 (763)
T ss_pred cCcceecccCCCCCEEEEecCCcccCCCCCceeCCCCchhHHHHHHHHHHhhhhccccccccccccccCCCcccccccCC
Confidence 99999988 999999999999999999999999999999999999999999999999999987644 454 34999
Q ss_pred CchHHHHhhhccCCCCCCcc--------ccchhhhhhccC-CCccccccCCCCCcccchHHHHHhhHHhhhhhhchhhHH
Q 005287 315 SMPHLLSSFLRHRSLSSPSE--------AENEIDEILASE-IDEEDEYDQLPPIKILKKSQFERLSKSQKKSYLDELDYR 385 (704)
Q Consensus 315 plp~l~~~~l~~~~~~~~~~--------~~~~~~~~~~~~-~~~e~eyd~lp~~~~l~k~~~~~l~~~~~~~y~~e~~~r 385 (704)
||||||||||++|+|+|+++ +|.|++|++|+| ||+|||||||||||||+|||++||||||||+||||||||
T Consensus 360 plp~~ls~ll~~r~~~k~~~~~~~~~~d~d~~~~~~~d~~~ed~e~eydqlppf~~l~ksq~~kl~k~q~k~y~de~dyr 439 (763)
T TIGR00993 360 PLPYLLSWLLQSRAHPKLPEQQGGDEEDSDIELEDSSDSDEESGEDEYDQLPPFKPLTKAQMAKLSKEQRKAYLEEYDYR 439 (763)
T ss_pred chHHHHHHHhhcCCCCCChhhhcCccccccchhhhccccccccccccccccCCCccccHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999999998 455666766654 445789999999999999999999999999999999999
Q ss_pred HHHHHHhHhHHHHHHHHHhhhccccC------CCCCCC-CCCCCCccccccCCCCCCCCCCCCCcccceeeeccCCceee
Q 005287 386 EILYFKKQLKEESRRRKENKLSKEEC------LPNDST-PDEQTSSEAVMLPDMVVPPSFDPDCLAYRYRCLVTSDQWLV 458 (704)
Q Consensus 386 ~~l~~kkq~~~~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~~~~~~d~~~p~sfd~d~~~~ryr~l~~~~~~~~ 458 (704)
||||||||||||+||+|||||+|+++ ++++++ ++++|++||||||||+||||||||||+||||||++++||||
T Consensus 440 ~kl~~kkq~ke~~~r~k~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~pd~~lp~sFDsD~p~~rYr~l~~~~q~l~ 519 (763)
T TIGR00993 440 VKLLQKKQWREELKRMKMMKKFGKEIGELPDGYSEEVDEENGGPAAVPVPLPDMVLPASFDSDNPAYRYRYLEPSSQLLT 519 (763)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccCCccCcccccccccCCCccccccCccccCCCccCCCCccceeecccCccceeE
Confidence 99999999999999999999999866 333333 77789999999999999999999999999999999999999
Q ss_pred eeecCCCCCCccCCCCccchhhhhhhccccceeEEEEEeecccceeeeeeceeEEeCCCCCeeeeeeeeeccCcceEEEE
Q 005287 459 RPVLDLQGWDHDVGFDGINLETAVEIKSNVFASIAGQITKDKHDFNIHSESAAAYVDPEGPTYCIGLDVQSSGKDMIYTV 538 (704)
Q Consensus 459 rpv~~~~gwdhd~g~dg~~~e~~~~~~~~~~~~~~~q~~kdk~~~~~~~~~~~~~~~~~~~~~~~g~d~q~~~~~~~y~~ 538 (704)
|||||||||||||||||||+|++++|+++||||++||||||||||+||+|||+||||++++|+|+||||||+|||||||+
T Consensus 520 rpvl~~~gWDhd~g~dg~~~e~~~~~~~~~p~s~~~q~~kdkk~~~i~~e~~~s~kh~~~~s~~~g~diQ~~gk~l~yt~ 599 (763)
T TIGR00993 520 RPVLDTHGWDHDCGYDGVNAERSFAVKEKFPASVTVQVTKDKKDFNIHLDSSVSAKHGENGSTMAGFDIQNVGKQLAYTV 599 (763)
T ss_pred eecccCCCCccccCcCcccHHHHHHHHhcCcceEEEEEeechhhceeeeeeeeeeecCCCcceeeeeehhhhchheEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecceecccccccccccceeEeeeCCeeeeeeeeeeeeeecceeEEEEeccceeecCcccccceeEEEeccCCCCCcCccc
Q 005287 539 HGNTKLRNFKHNVTDCGVSLTSFGNKNYVGAKLEDSLLVGKRLKLVMNAGRMGGSGQVAYGGSFEAILRGADYPVRNDNI 618 (704)
Q Consensus 539 ~~~t~~~~~~~n~~~~g~~~t~~g~~~~~g~k~ed~~~~~~~~~~~~~~g~~~~~~~~ayg~~~e~~~~~~~~p~~~~~~ 618 (704)
||||||||||+|||+||+|+||||++|++|+||||+|+|||||+||+|+|+|+++||+||||||||+||++|||++++++
T Consensus 600 r~etk~kn~~~n~t~~g~s~t~lg~~~~~G~K~Ed~~~~gkr~~lv~~~G~~~~~gd~Ayg~~~e~~lr~~dyp~~~~~~ 679 (763)
T TIGR00993 600 RGETKFKNFRRNKTAAGLSVTFLGENVSTGVKLEDQIALGKRLVLVGSTGTMRSQGDSAYGANLEVRLREADFPLGQDQS 679 (763)
T ss_pred eccceecccccccccceeEEEEecceeeeeeeehheeeeccceEEEEecceeeccCcccccceeEEEeecCcCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeeccccceEEeecccceecccCCceeEEEEeeCCCcceeEEEEecCchhhHHHHHHHHHHHHHHHhhhcccC
Q 005287 619 SLTMTALSFNKEVVLTGGFQSEFRPIRGLNMSVNANLNSRKMGQVCIKLNSSAHMEIALLAVFSIFRGLLRRKAAEN 695 (704)
Q Consensus 619 ~~~~s~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~~~~g~~~~~~~s~~~~~~a~~~~~~~~~~~~~~~~~~~ 695 (704)
|||||+|+|||||||||||||||++||+|+|++|||||||++||||||+|||||+||||+|+|||+++||+|++|+.
T Consensus 680 tl~~s~~~w~~~~~l~~n~qsq~~~gr~s~~~~~~~lnn~~~Gqi~ir~~sse~~~ial~~~~~~~~~l~~~~~~~~ 756 (763)
T TIGR00993 680 SLGLSLVDWRGDLALGANIQSQVSIGRSSKLAARAGLNNKGSGQISVRTSSSDQLQIALVAILPLAKKIYKYYYPQT 756 (763)
T ss_pred hhceeeeccccceeeeccceeeecccCCceEEEEecccCcccceEEEEeccHHHHHHHHHHHHHHHHHHHHhcCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999974
No 2
>PF11886 DUF3406: Domain of unknown function (DUF3406); InterPro: IPR024283 This C-terminal domain is found in chloroplast protein import component Toc86/159 [] and homologue Toc90 [], and in some uncharacterised proteins.
Probab=100.00 E-value=9.8e-132 Score=1001.14 Aligned_cols=273 Identities=51% Similarity=0.847 Sum_probs=270.8
Q ss_pred CCCCccccccCCCCCCCCCCCCCcccceeeeccCCceeeeeecCCCCCCccCCCCccchhhhhhhccccceeEEEEEeec
Q 005287 420 EQTSSEAVMLPDMVVPPSFDPDCLAYRYRCLVTSDQWLVRPVLDLQGWDHDVGFDGINLETAVEIKSNVFASIAGQITKD 499 (704)
Q Consensus 420 ~~~~~~~~~~~d~~~p~sfd~d~~~~ryr~l~~~~~~~~rpv~~~~gwdhd~g~dg~~~e~~~~~~~~~~~~~~~q~~kd 499 (704)
+.|++||||||||+||||||||||+|||||||+++|||||||||||||||||||||||+|++++|+++||++++|||+||
T Consensus 1 ~~~~~v~vp~pD~~lP~SFDsD~p~hRYR~Le~~~q~lvRPVld~~GWDHD~G~DGvn~E~~~~l~~~~pas~~~Qv~KD 80 (273)
T PF11886_consen 1 EGPAQVPVPMPDMALPPSFDSDNPAHRYRCLEPTSQWLVRPVLDPHGWDHDCGFDGVNLERSLVLKKKIPASVSGQVTKD 80 (273)
T ss_pred CCCccceecCCcccCCCCcCCCCCceeeEeecCccceeEeecccCCCcccccCccceehhheehhhcCCceEEEEEEEec
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeeeeceeEEeCCCCCeeeeeeeeeccCcceEEEEecceecccccccccccceeEeeeCCeeeeeeeeeeeeeecc
Q 005287 500 KHDFNIHSESAAAYVDPEGPTYCIGLDVQSSGKDMIYTVHGNTKLRNFKHNVTDCGVSLTSFGNKNYVGAKLEDSLLVGK 579 (704)
Q Consensus 500 k~~~~~~~~~~~~~~~~~~~~~~~g~d~q~~~~~~~y~~~~~t~~~~~~~n~~~~g~~~t~~g~~~~~g~k~ed~~~~~~ 579 (704)
||||+||+|||+||||++++|+|+||||||+||||+||+||||||||||+|||+||+|+||||++|++|+||||+|+|||
T Consensus 81 Kkd~~i~~e~s~s~kh~~~~s~~~G~DiQt~gkdLaYt~rgeTkfkn~k~Nkt~~G~S~T~lG~~~~~G~KlED~i~vgk 160 (273)
T PF11886_consen 81 KKDFNIQLESSASYKHGEGGSSMAGFDIQTVGKDLAYTLRGETKFKNFKKNKTTAGLSVTFLGDNVATGLKLEDQISVGK 160 (273)
T ss_pred hhheeEEEeeEEEEEcCCCceEEEEEeeeecCceeEEEEcccceeeccccccccceeEEEEecCeEEEEEeeeeEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEeccceeecCcccccceeEEEeccCCCCCcCccceeeeeeeccccceEEeecccceecccCCceeEEEEeeCCCc
Q 005287 580 RLKLVMNAGRMGGSGQVAYGGSFEAILRGADYPVRNDNISLTMTALSFNKEVVLTGGFQSEFRPIRGLNMSVNANLNSRK 659 (704)
Q Consensus 580 ~~~~~~~~g~~~~~~~~ayg~~~e~~~~~~~~p~~~~~~~~~~s~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~~~ 659 (704)
|+|||+|+|+|+++||+||||||||+||++|||++|+++|||||+|+|||||||||||||||++||+|+|+||||||||+
T Consensus 161 rlklv~s~G~m~~~gd~AYGg~~Ea~lr~kDyPi~~~~~tlglS~m~w~~d~alg~NlqSqf~~gr~skm~v~anlNnk~ 240 (273)
T PF11886_consen 161 RLKLVMSAGAMRGQGDVAYGGNLEATLRGKDYPIGQDQSTLGLSLMKWRGDLALGANLQSQFSVGRGSKMAVRANLNNKG 240 (273)
T ss_pred cEEEEEEccEeeecCceeeceeEEEEeecCCCCCCCcceeeeeEeEecccCeEEeecceEeeecCCCceEEEEecccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEecCchhhHHHHHHHHHHHHHHHhhhc
Q 005287 660 MGQVCIKLNSSAHMEIALLAVFSIFRGLLRRKA 692 (704)
Q Consensus 660 ~g~~~~~~~s~~~~~~a~~~~~~~~~~~~~~~~ 692 (704)
+||||||+|||||+||||+|+|||+++||+|++
T Consensus 241 ~Gqisik~sSSe~lqIALi~~vpi~~~l~~r~~ 273 (273)
T PF11886_consen 241 TGQISIKTSSSEQLQIALIGLVPIARSLLRRLR 273 (273)
T ss_pred cceEEEEecchHhHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999974
No 3
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=100.00 E-value=3.2e-38 Score=327.40 Aligned_cols=242 Identities=52% Similarity=0.900 Sum_probs=218.7
Q ss_pred ccchhHHHHhhccccCCCCCCCCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECC
Q 005287 56 LRSDRTRAIAREQEATGIPDLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTP 135 (704)
Q Consensus 56 lg~d~a~~ia~~~~~~~~~~~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTP 135 (704)
+.++.+...+.+..+...+....+++|+|+|+||||||||+|+|+|...+.++.+.++|+.+..+....+|.+++|||||
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTP 87 (249)
T cd01853 8 FFPDAAQTKALELEAKGKEELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTP 87 (249)
T ss_pred cCcHHHHHHHHHHHHHhhhhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECC
Confidence 34567777778888888888999999999999999999999999999998888888999999988888999999999999
Q ss_pred CCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCCCCC
Q 005287 136 GFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPEG 215 (704)
Q Consensus 136 Gl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~pde 215 (704)
|+.+..... ..+..++..+.+++...++|++|||++++..+.+..|..+++.|.+.||..+|+++|+|+||+|..+|++
T Consensus 88 Gl~~~~~~~-~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~ 166 (249)
T cd01853 88 GLLESVMDQ-RVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDG 166 (249)
T ss_pred CcCcchhhH-HHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCC
Confidence 999874433 4566777888888887789999999999987766788899999999999999999999999999999999
Q ss_pred CCCCCcchhhhhhhccHHHHHHHHHHhcccCccchhhhhccCCccccCccCcccCCCccchHHHHHhhhhhhhhhhhHHh
Q 005287 216 SSGYPFSYESYVTQCTDLVQQRIHQAVSDARLENQVLLVENHPQCRRNVKGEQILPNGQIWKSRFLLLCICTKVLGDANA 295 (704)
Q Consensus 216 ~~~~~~s~e~~i~q~~~~Lq~~I~q~~~d~~~~~pv~lVen~p~c~~N~~ge~vLP~~~~W~~~Ll~~c~s~ki~~eA~~ 295 (704)
.++.|..++.+...+.+..++.+.+..++...++|+.+|+|+|.|.+|..||++||+++.|+++|+++|++.+++.+|+.
T Consensus 167 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pv~lven~~~c~~n~~~~~vlp~g~~w~~~~~~~~~~~~~~~~~~~ 246 (249)
T cd01853 167 LNGTPFSYDRFVAQRSHIVQQAIQQAAGDPRLENPVSLVENHPRCRKNREGEKVLPNGTVWKPQLLLLCYSVKLLSEANI 246 (249)
T ss_pred CCCCcchHHHHHHHHHHHHHHHhhhhccCccccCCEEEEeCCCcccCCCCCCeECCCCCccHHHHHHHHHHHHhcccccc
Confidence 99999999999888888899999988888899999999999999999999999999999999999999999999999887
Q ss_pred hhc
Q 005287 296 LLG 298 (704)
Q Consensus 296 ~lk 298 (704)
+++
T Consensus 247 ~~~ 249 (249)
T cd01853 247 LLD 249 (249)
T ss_pred ccC
Confidence 763
No 4
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=100.00 E-value=2.9e-36 Score=319.23 Aligned_cols=251 Identities=26% Similarity=0.444 Sum_probs=212.7
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
...++|+|+|++|||||||+|+|+|++.+.++.+.++|..+........|.++.||||||+.+.. ..++...+.++
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~----~~~e~~~~~ik 111 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGG----YINDQAVNIIK 111 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchH----HHHHHHHHHHH
Confidence 56899999999999999999999999998888887777776666667799999999999999763 33455566677
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCCCCCCCCCCcchhhhhhhccHHHHH
Q 005287 157 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPEGSSGYPFSYESYVTQCTDLVQQ 236 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~pde~~~~~~s~e~~i~q~~~~Lq~ 236 (704)
.++...++|+||||++++..+.+..|..+++.|.+.||..+|+++|+||||+|.++|++ .+|++|+.++.+.+|+
T Consensus 112 ~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~-----~~~e~fv~~~~~~lq~ 186 (313)
T TIGR00991 112 RFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDG-----LEYNDFFSKRSEALLR 186 (313)
T ss_pred HHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCC-----CCHHHHHHhcHHHHHH
Confidence 77766789999999998876655678999999999999999999999999999998776 5799999999999999
Q ss_pred HHHHHhcccC-----ccchhhhhccCCccccCccCcccCCCccchHHHHHhhhhhhhhhhhHHhhhccccccccC-CCCC
Q 005287 237 RIHQAVSDAR-----LENQVLLVENHPQCRRNVKGEQILPNGQIWKSRFLLLCICTKVLGDANALLGFRDSIELG-PLGN 310 (704)
Q Consensus 237 ~I~q~~~d~~-----~~~pv~lVen~p~c~~N~~ge~vLP~~~~W~~~Ll~~c~s~ki~~eA~~~lk~~~~~~~~-~~~~ 310 (704)
.|+++.++.+ +++|+.+|||||.|.+|..||++||+++.|+++|+..... -+.+..++++-++..+..+ |+..
T Consensus 187 ~i~~~~~~~~~~~~~~~~pv~lven~~~c~~n~~ge~vlp~g~~w~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 265 (313)
T TIGR00991 187 VIHSGAGLKKRDYQDFPIPVALVENSGRCKKNESDEKILPDGTPWIPKLMKEITE-VISNGSKPIHVDKKLIDGPNPNNR 265 (313)
T ss_pred HHHHHhcccccccccccCCEEEEecCCcccCCCCCCeECCCCCccHHHHHHHHHH-HHhCCCCCeEecHHHccCCCCCcc
Confidence 9999999865 4789999999999999999999999999999999988755 3677778888888777743 4333
Q ss_pred -CCCCCchHHHHhhhccCCCCCCccccchh
Q 005287 311 -TRVPSMPHLLSSFLRHRSLSSPSEAENEI 339 (704)
Q Consensus 311 -~~~~plp~l~~~~l~~~~~~~~~~~~~~~ 339 (704)
..+.||-.+.+++|.++++.+ .+..|+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 293 (313)
T TIGR00991 266 GKMFIPLIFAVQYLLVVKPIRR--AIHADI 293 (313)
T ss_pred cccHHHHHHHHHHHhhhHHHHH--HHHHHH
Confidence 278899999999999888876 344444
No 5
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.90 E-value=6.5e-24 Score=214.99 Aligned_cols=202 Identities=26% Similarity=0.359 Sum_probs=141.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCcccc-CCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETD-AFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 158 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs-~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ 158 (704)
|||+|+|+||+||||++|+|+|...+.++ ...++|..+......+.|+.++|||||||.++... +..+.+.+.++
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~----~~~~~~~i~~~ 76 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGS----DEEIIREIKRC 76 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEE----HHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCccc----HHHHHHHHHHH
Confidence 68999999999999999999999998885 56788999999999999999999999999887643 35667777776
Q ss_pred Hhc--CCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCCCCCCCCCCcchhhhhhhcc-HHHH
Q 005287 159 IRR--SPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPEGSSGYPFSYESYVTQCT-DLVQ 235 (704)
Q Consensus 159 ik~--~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~pde~~~~~~s~e~~i~q~~-~~Lq 235 (704)
+.. .++|++|||++++.++ ..+..+++.+.+.||..+|+++|||+|++|.+.+. .+++|+++.. ..++
T Consensus 77 l~~~~~g~ha~llVi~~~r~t--~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~-------~~~~~l~~~~~~~l~ 147 (212)
T PF04548_consen 77 LSLCSPGPHAFLLVIPLGRFT--EEDREVLELLQEIFGEEIWKHTIVVFTHADELEDD-------SLEDYLKKESNEALQ 147 (212)
T ss_dssp HHHTTT-ESEEEEEEETTB-S--HHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTT-------THHHHHHHHHHHHHH
T ss_pred HHhccCCCeEEEEEEecCcch--HHHHHHHHHHHHHccHHHHhHhhHHhhhccccccc-------cHHHHHhccCchhHh
Confidence 654 3789999999988655 37889999999999999999999999999988543 3889998554 6799
Q ss_pred HHHHHHhcccCccchhhhhccCCccccCccCcccCCCccchHHHHHhhhhhhhhhhhHHhhhc
Q 005287 236 QRIHQAVSDARLENQVLLVENHPQCRRNVKGEQILPNGQIWKSRFLLLCICTKVLGDANALLG 298 (704)
Q Consensus 236 ~~I~q~~~d~~~~~pv~lVen~p~c~~N~~ge~vLP~~~~W~~~Ll~~c~s~ki~~eA~~~lk 298 (704)
+.|++|.+.++..+.... ........-...|...+..+..-...||+++++.+++...+
T Consensus 148 ~li~~c~~R~~~f~n~~~----~~~~~~~qv~~Ll~~ie~mv~~n~g~~~~~~~~~~~~~~~~ 206 (212)
T PF04548_consen 148 ELIEKCGGRYHVFNNKTK----DKEKDESQVSELLEKIEEMVQENGGQYYSNEMFEEAEERKE 206 (212)
T ss_dssp HHHHHTTTCEEECCTTHH----HHHHHHHHHHHHHHHHHHHHHHTTTT--B-HHHHHHHHCCH
T ss_pred HHhhhcCCEEEEEecccc----chhhhHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHH
Confidence 999999888765442200 00000000011122223334444467888888888887655
No 6
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.88 E-value=8.4e-22 Score=196.21 Aligned_cols=157 Identities=22% Similarity=0.341 Sum_probs=128.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCcccc-CCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETD-AFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 158 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs-~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ 158 (704)
++|+++|+||||||||+|+|+|++.+.++ ...++|+.+..+...+.|.+++||||||+.+..... ..+...+.++
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~----~~~~~~i~~~ 76 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSP----EQLSKEIVRC 76 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCCh----HHHHHHHHHH
Confidence 58999999999999999999999988775 356789999998888999999999999999875322 3333444444
Q ss_pred Hhc--CCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCCCCCCCCCCcchhhhhhhccHHHHH
Q 005287 159 IRR--SPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPEGSSGYPFSYESYVTQCTDLVQQ 236 (704)
Q Consensus 159 ik~--~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~pde~~~~~~s~e~~i~q~~~~Lq~ 236 (704)
+.. .++|++|||++++..+ ..|..+++.+.+.||..+|+++|+|+|++|.+.+ .++++|+......++.
T Consensus 77 ~~~~~~g~~~illVi~~~~~t--~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~-------~~~~~~~~~~~~~l~~ 147 (196)
T cd01852 77 LSLSAPGPHAFLLVVPLGRFT--EEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEG-------GTLEDYLENSCEALKR 147 (196)
T ss_pred HHhcCCCCEEEEEEEECCCcC--HHHHHHHHHHHHHhChHhHhcEEEEEECccccCC-------CcHHHHHHhccHHHHH
Confidence 432 4789999999887744 4788999999999999999999999999998853 2588999888789999
Q ss_pred HHHHHhcccCccc
Q 005287 237 RIHQAVSDARLEN 249 (704)
Q Consensus 237 ~I~q~~~d~~~~~ 249 (704)
.+.+|.+.+...+
T Consensus 148 l~~~c~~r~~~f~ 160 (196)
T cd01852 148 LLEKCGGRYVAFN 160 (196)
T ss_pred HHHHhCCeEEEEe
Confidence 9999988764443
No 7
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.87 E-value=9.7e-23 Score=223.08 Aligned_cols=200 Identities=20% Similarity=0.207 Sum_probs=160.2
Q ss_pred cccccchhhHHHHHHhhcCCCCchHHHHHHHHHhh--------hcccccccchhhhhhcccchhHHHHhhccccCC----
Q 005287 5 LVKIEDLQVKFLRLLQRFGQSQDNILAVKVLYRLH--------LATLIRAGESDMKMVNLRSDRTRAIAREQEATG---- 72 (704)
Q Consensus 5 ~~ki~~~rvk~lrl~~R~G~s~ed~~VaqvL~rl~--------lae~~~~~~~~~~~~~lg~d~a~~ia~~~~~~~---- 72 (704)
+.=++++++.+|.++.|.|++++|..+|++|++.. |+++........+|+++|++.++.+|+.|+..-
T Consensus 78 ~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLl 157 (444)
T COG1160 78 LIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAEELAYEFYSLGFGEPVPISAEHGRGIGDLL 157 (444)
T ss_pred HHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhhhhHHHHHhcCCCCceEeehhhccCHHHHH
Confidence 34478899999999999999999999999999874 778876677778899999999999999997631
Q ss_pred ---------C---CCC--CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCC
Q 005287 73 ---------I---PDL--DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFL 138 (704)
Q Consensus 73 ---------~---~~~--~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~ 138 (704)
. ... ...++|+|+|+||||||||+|+|+|++++++++.++||++......+++|+++++|||+|+.
T Consensus 158 d~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiR 237 (444)
T COG1160 158 DAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIR 237 (444)
T ss_pred HHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCC
Confidence 0 111 24699999999999999999999999999999999999999999999999999999999998
Q ss_pred Ccccchhh-hhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCCC
Q 005287 139 PSCVRNVK-RNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 213 (704)
Q Consensus 139 d~~~~~~~-~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~p 213 (704)
....-... ..-.+.+.+ +.+ ..+++|++|++.... ...+|..++..+.+. .+++|+|+||||++..
T Consensus 238 rk~ki~e~~E~~Sv~rt~-~aI--~~a~vvllviDa~~~-~~~qD~~ia~~i~~~-----g~~~vIvvNKWDl~~~ 304 (444)
T COG1160 238 RKGKITESVEKYSVARTL-KAI--ERADVVLLVIDATEG-ISEQDLRIAGLIEEA-----GRGIVIVVNKWDLVEE 304 (444)
T ss_pred cccccccceEEEeehhhH-hHH--hhcCEEEEEEECCCC-chHHHHHHHHHHHHc-----CCCeEEEEEccccCCc
Confidence 76432100 001112222 223 267999999776542 224788899888887 6899999999999854
No 8
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.72 E-value=2.1e-17 Score=160.61 Aligned_cols=121 Identities=17% Similarity=0.310 Sum_probs=90.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 159 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~i 159 (704)
++|+++|.||||||||+|+|+|.. +.++.++++|.+.........+.++.+|||||+++.... ...+++ ..+++
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~--s~ee~v---~~~~l 74 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSK--SEEERV---ARDYL 74 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSS--SHHHHH---HHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCC--CcHHHH---HHHHH
Confidence 589999999999999999999999 778889999999999999999999999999999875322 112222 23455
Q ss_pred hcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCCCC
Q 005287 160 RRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPE 214 (704)
Q Consensus 160 k~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~pd 214 (704)
...++|++++|++..... .+..++.++.+. ..|+|+|+||+|.+...
T Consensus 75 ~~~~~D~ii~VvDa~~l~---r~l~l~~ql~e~-----g~P~vvvlN~~D~a~~~ 121 (156)
T PF02421_consen 75 LSEKPDLIIVVVDATNLE---RNLYLTLQLLEL-----GIPVVVVLNKMDEAERK 121 (156)
T ss_dssp HHTSSSEEEEEEEGGGHH---HHHHHHHHHHHT-----TSSEEEEEETHHHHHHT
T ss_pred hhcCCCEEEEECCCCCHH---HHHHHHHHHHHc-----CCCEEEEEeCHHHHHHc
Confidence 556899999998776543 244566666654 58999999999988543
No 9
>COG1159 Era GTPase [General function prediction only]
Probab=99.70 E-value=1.1e-16 Score=167.83 Aligned_cols=125 Identities=18% Similarity=0.227 Sum_probs=105.5
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
.+..|++||+||||||||+|+|+|+..+++|+.+.||+.......+.+..++++|||||+..+.. ..++.+.+.+..
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~---~l~~~m~~~a~~ 81 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKH---ALGELMNKAARS 81 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcch---HHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999988888888899999999999998743 456666666666
Q ss_pred HHhcCCCCEEEEEEeccC-ccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCCCC
Q 005287 158 FIRRSPPDIVLYFERLDL-ISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPE 214 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~-~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~pd 214 (704)
.+. .+|+||||++.+. ++ ..|..+++.+.+. ..|+|+++||+|...++
T Consensus 82 sl~--dvDlilfvvd~~~~~~--~~d~~il~~lk~~-----~~pvil~iNKID~~~~~ 130 (298)
T COG1159 82 ALK--DVDLILFVVDADEGWG--PGDEFILEQLKKT-----KTPVILVVNKIDKVKPK 130 (298)
T ss_pred Hhc--cCcEEEEEEeccccCC--ccHHHHHHHHhhc-----CCCeEEEEEccccCCcH
Confidence 664 7899999988876 44 3677888888873 47999999999988644
No 10
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.69 E-value=1.9e-16 Score=174.38 Aligned_cols=159 Identities=20% Similarity=0.246 Sum_probs=114.2
Q ss_pred CCCCCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHH
Q 005287 74 PDLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIML 153 (704)
Q Consensus 74 ~~~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~ 153 (704)
..+...++|+++|+||||||||+|+|+++++++|+++++||+++.+....++|.++.++||+|++++.. ......+.+
T Consensus 212 ~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d--~VE~iGIeR 289 (454)
T COG0486 212 KILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDD--VVERIGIER 289 (454)
T ss_pred hhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCcc--HHHHHHHHH
Confidence 355678999999999999999999999999999999999999999999999999999999999997632 122233333
Q ss_pred HHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCCCCCCCCC-------Ccchhhh
Q 005287 154 SVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPEGSSGY-------PFSYESY 226 (704)
Q Consensus 154 ~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~pde~~~~-------~~s~e~~ 226 (704)
+. +.++ .+|+||||++..... ...|..++..+. ..+|+++|+||.|+..+...... -..+...
T Consensus 290 s~-~~i~--~ADlvL~v~D~~~~~-~~~d~~~~~~~~------~~~~~i~v~NK~DL~~~~~~~~~~~~~~~~~i~iSa~ 359 (454)
T COG0486 290 AK-KAIE--EADLVLFVLDASQPL-DKEDLALIELLP------KKKPIIVVLNKADLVSKIELESEKLANGDAIISISAK 359 (454)
T ss_pred HH-HHHH--hCCEEEEEEeCCCCC-chhhHHHHHhcc------cCCCEEEEEechhcccccccchhhccCCCceEEEEec
Confidence 32 2232 789999998776531 224555555222 24799999999999865442211 0111111
Q ss_pred hhhccHHHHHHHHHHhcc
Q 005287 227 VTQCTDLVQQRIHQAVSD 244 (704)
Q Consensus 227 i~q~~~~Lq~~I~q~~~d 244 (704)
-.++.+.|.+.|.+....
T Consensus 360 t~~Gl~~L~~~i~~~~~~ 377 (454)
T COG0486 360 TGEGLDALREAIKQLFGK 377 (454)
T ss_pred CccCHHHHHHHHHHHHhh
Confidence 234667788888877654
No 11
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.66 E-value=9.8e-16 Score=139.62 Aligned_cols=116 Identities=22% Similarity=0.256 Sum_probs=86.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHh
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 160 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik 160 (704)
+|+|+|.+|+|||||+|+|++...+.++..+++|+..........+..+.|+||||+.+..... .. ......+.+.+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~-~~-~~~~~~~~~~~- 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQD-ND-GKEIRKFLEQI- 77 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHH-HH-HHHHHHHHHHH-
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhh-HH-HHHHHHHHHHH-
Confidence 6999999999999999999998888888888999999776777899999999999998764322 11 11233344444
Q ss_pred cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEc
Q 005287 161 RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTH 207 (704)
Q Consensus 161 ~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK 207 (704)
..+|+++||++.+.. ....+..+++.|. ..+|+++|+||
T Consensus 78 -~~~d~ii~vv~~~~~-~~~~~~~~~~~l~------~~~~~i~v~NK 116 (116)
T PF01926_consen 78 -SKSDLIIYVVDASNP-ITEDDKNILRELK------NKKPIILVLNK 116 (116)
T ss_dssp -CTESEEEEEEETTSH-SHHHHHHHHHHHH------TTSEEEEEEES
T ss_pred -HHCCEEEEEEECCCC-CCHHHHHHHHHHh------cCCCEEEEEcC
Confidence 367999999886552 1123456666663 25899999998
No 12
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.65 E-value=8.5e-16 Score=168.87 Aligned_cols=123 Identities=17% Similarity=0.103 Sum_probs=100.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 159 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~i 159 (704)
..|+|||+||||||||+|.|+|+..++|++.+++|++.....+.+.+.++.+|||+|+.+.... .....+.++....+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~--~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDED--ELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCch--HHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999999999999999999999999999865421 22344444444455
Q ss_pred hcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 160 RRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 160 k~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
. .+|++|||++.... ....|..+.+.|.+. ++|+|+|+||+|...
T Consensus 82 ~--eADvilfvVD~~~G-it~~D~~ia~~Lr~~-----~kpviLvvNK~D~~~ 126 (444)
T COG1160 82 E--EADVILFVVDGREG-ITPADEEIAKILRRS-----KKPVILVVNKIDNLK 126 (444)
T ss_pred H--hCCEEEEEEeCCCC-CCHHHHHHHHHHHhc-----CCCEEEEEEcccCch
Confidence 3 78999999766431 234788888888854 699999999999873
No 13
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.63 E-value=3.5e-16 Score=158.78 Aligned_cols=176 Identities=28% Similarity=0.420 Sum_probs=117.7
Q ss_pred CCCCCeEEEEEeCCCCcHHHHHHHHhCCCCccccC----C--CCccceEEE--EEeeEcCe--EEEEEECCCCCCcccch
Q 005287 75 DLDFSIRILVLGKTGVGKSATINSIFDQTKTETDA----F--QPATDCIRE--VKGSVNGI--KVTFIDTPGFLPSCVRN 144 (704)
Q Consensus 75 ~~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~----~--~~tT~~~~~--~~~~~~G~--~v~LIDTPGl~d~~~~~ 144 (704)
..++.++|+|||.+|.||||++|+|+.......+. . -+.|+.... ...+.+|+ ++++||||||+|.-..
T Consensus 42 k~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN- 120 (336)
T KOG1547|consen 42 KTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINN- 120 (336)
T ss_pred hccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCc-
Confidence 45789999999999999999999999876554321 1 123443333 23344555 6789999999987432
Q ss_pred hhhhHHHHHHHHHH--------------------HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEE
Q 005287 145 VKRNRKIMLSVKKF--------------------IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILV 204 (704)
Q Consensus 145 ~~~n~~il~~Ik~~--------------------ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVV 204 (704)
+..++-|.+| +.+.+.|||||+++..+...+..|..+++.|.+. .++|.|
T Consensus 121 ----~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v------vNvvPV 190 (336)
T KOG1547|consen 121 ----DNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV------VNVVPV 190 (336)
T ss_pred ----cchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh------heeeee
Confidence 2323322222 2344789999999999888888999999999998 799999
Q ss_pred EEccCCCCCCCCCCCCcchhhhhhhccHHHHHHHHHHhcccC------------ccc---hhhhhccCCccccC------
Q 005287 205 MTHSSSTLPEGSSGYPFSYESYVTQCTDLVQQRIHQAVSDAR------------LEN---QVLLVENHPQCRRN------ 263 (704)
Q Consensus 205 LTK~D~l~pde~~~~~~s~e~~i~q~~~~Lq~~I~q~~~d~~------------~~~---pv~lVen~p~c~~N------ 263 (704)
+.|+|.+.-++ ..++++.|++.+.... .++ ...+-+.+|+.+.+
T Consensus 191 IakaDtlTleE---------------r~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN~kvR~~iPFAVVGsd~e~~ 255 (336)
T KOG1547|consen 191 IAKADTLTLEE---------------RSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLNDKVRESIPFAVVGSDKEIQ 255 (336)
T ss_pred EeecccccHHH---------------HHHHHHHHHHHHHhcCcccccccccccchhHHHHHHHHHhhCCeEEecccceEE
Confidence 99999885332 1223333333321100 000 11345667777665
Q ss_pred ccCcccCCCccch
Q 005287 264 VKGEQILPNGQIW 276 (704)
Q Consensus 264 ~~ge~vLP~~~~W 276 (704)
.+|+.+|.+...|
T Consensus 256 vnG~~vlGRktrW 268 (336)
T KOG1547|consen 256 VNGRRVLGRKTRW 268 (336)
T ss_pred EcCeEeecccccc
Confidence 3578888888888
No 14
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.63 E-value=1.3e-16 Score=168.71 Aligned_cols=127 Identities=27% Similarity=0.432 Sum_probs=80.3
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCcccc-CCC------CccceEEE--EEeeEcC--eEEEEEECCCCCCcccchhh
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETD-AFQ------PATDCIRE--VKGSVNG--IKVTFIDTPGFLPSCVRNVK 146 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs-~~~------~tT~~~~~--~~~~~~G--~~v~LIDTPGl~d~~~~~~~ 146 (704)
..++|+|+|.+|+|||||||+|++....... ... ..|..+.. .....++ .+++|||||||++....
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n--- 79 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDN--- 79 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTH---
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccc---
Confidence 4689999999999999999999998765543 111 12223332 2233344 36889999999986321
Q ss_pred hhHHHHHHHH--------HHHh-----------cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEc
Q 005287 147 RNRKIMLSVK--------KFIR-----------RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTH 207 (704)
Q Consensus 147 ~n~~il~~Ik--------~~ik-----------~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK 207 (704)
...+..+. .++. ..++|+|||+++.........|...|+.|.+. .|+|+|+.|
T Consensus 80 --~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~------vNvIPvIaK 151 (281)
T PF00735_consen 80 --SDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR------VNVIPVIAK 151 (281)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT------SEEEEEEST
T ss_pred --hhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc------ccEEeEEec
Confidence 22222222 2221 23789999999887766556788889888876 899999999
Q ss_pred cCCCCCCC
Q 005287 208 SSSTLPEG 215 (704)
Q Consensus 208 ~D~l~pde 215 (704)
+|.+.+++
T Consensus 152 aD~lt~~e 159 (281)
T PF00735_consen 152 ADTLTPEE 159 (281)
T ss_dssp GGGS-HHH
T ss_pred ccccCHHH
Confidence 99997554
No 15
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.63 E-value=7.5e-16 Score=162.59 Aligned_cols=127 Identities=28% Similarity=0.386 Sum_probs=85.9
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCC-------CCccceE--EEEEeeEcC--eEEEEEECCCCCCcccchh
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAF-------QPATDCI--REVKGSVNG--IKVTFIDTPGFLPSCVRNV 145 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~-------~~tT~~~--~~~~~~~~G--~~v~LIDTPGl~d~~~~~~ 145 (704)
++.++|+|+|.+|+|||||+|+|++......... ...|... .......+| .+++|||||||++....
T Consensus 2 g~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~-- 79 (276)
T cd01850 2 GFQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINN-- 79 (276)
T ss_pred CcEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccc--
Confidence 4679999999999999999999999887655321 1233322 233344556 46899999999986321
Q ss_pred hhhHHHHHHHH--------H------------HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEE
Q 005287 146 KRNRKIMLSVK--------K------------FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVM 205 (704)
Q Consensus 146 ~~n~~il~~Ik--------~------------~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVL 205 (704)
...++.+. . .+...++|+|||++..........|..+++.+.. ..|+|+|+
T Consensus 80 ---~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~------~v~vi~Vi 150 (276)
T cd01850 80 ---SDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK------RVNIIPVI 150 (276)
T ss_pred ---hhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc------cCCEEEEE
Confidence 22222211 1 1223368999999876654444456777887765 37999999
Q ss_pred EccCCCCCC
Q 005287 206 THSSSTLPE 214 (704)
Q Consensus 206 TK~D~l~pd 214 (704)
||+|.+.++
T Consensus 151 nK~D~l~~~ 159 (276)
T cd01850 151 AKADTLTPE 159 (276)
T ss_pred ECCCcCCHH
Confidence 999998543
No 16
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.62 E-value=1.5e-15 Score=168.37 Aligned_cols=195 Identities=19% Similarity=0.184 Sum_probs=131.4
Q ss_pred ccchhhHHHHHHhhcCCCCchHHHHHHHHHhh--------hcccccccchhhhhhcccchhHHHHhhccccC--------
Q 005287 8 IEDLQVKFLRLLQRFGQSQDNILAVKVLYRLH--------LATLIRAGESDMKMVNLRSDRTRAIAREQEAT-------- 71 (704)
Q Consensus 8 i~~~rvk~lrl~~R~G~s~ed~~VaqvL~rl~--------lae~~~~~~~~~~~~~lg~d~a~~ia~~~~~~-------- 71 (704)
++.+++.++.++.+.|+++.+..++++|++.+ +++..........++.+++.....+++.++..
T Consensus 76 ~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~~~~~~~lg~~~~~~vSa~~g~gv~~ll~~i 155 (429)
T TIGR03594 76 IEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAVAAEFYSLGFGEPIPISAEHGRGIGDLLDAI 155 (429)
T ss_pred HhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCcccccHHHHHhcCCCCeEEEeCCcCCChHHHHHHH
Confidence 45566677888888899999999999998865 45544333333345556554333333333221
Q ss_pred -------C--CCCCCCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCccc
Q 005287 72 -------G--IPDLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCV 142 (704)
Q Consensus 72 -------~--~~~~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~ 142 (704)
. .......++|+++|.+|+|||||+|+|++.+...++..+++|.+........++..+.+|||||+.....
T Consensus 156 ~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~ 235 (429)
T TIGR03594 156 LELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGK 235 (429)
T ss_pred HHhcCcccccccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCcccccc
Confidence 0 1112345899999999999999999999999888888888999888888788899999999999976532
Q ss_pred chhhhhHHH-HHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 143 RNVKRNRKI-MLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 143 ~~~~~n~~i-l~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
.. ...+.. .....++++ .+|++++|++.... ....+..++..+.+. .+|+|+|+||+|+.
T Consensus 236 ~~-~~~e~~~~~~~~~~~~--~ad~~ilV~D~~~~-~~~~~~~~~~~~~~~-----~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 236 VT-EGVEKYSVLRTLKAIE--RADVVLLVLDATEG-ITEQDLRIAGLILEA-----GKALVIVVNKWDLV 296 (429)
T ss_pred ch-hhHHHHHHHHHHHHHH--hCCEEEEEEECCCC-ccHHHHHHHHHHHHc-----CCcEEEEEECcccC
Confidence 11 001111 111122343 67999999876532 122455555555443 47999999999987
No 17
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.60 E-value=3.9e-15 Score=165.51 Aligned_cols=194 Identities=19% Similarity=0.178 Sum_probs=126.3
Q ss_pred cchhhHHHHHHhhcCCCCchHHHHHHHHHhh--------hcccccccchhhhhhcccchhHHHHhhccccC---------
Q 005287 9 EDLQVKFLRLLQRFGQSQDNILAVKVLYRLH--------LATLIRAGESDMKMVNLRSDRTRAIAREQEAT--------- 71 (704)
Q Consensus 9 ~~~rvk~lrl~~R~G~s~ed~~VaqvL~rl~--------lae~~~~~~~~~~~~~lg~d~a~~ia~~~~~~--------- 71 (704)
..+++.++.++.+.+.+..+..++++|++.+ +++..........++.+++.....+++.++..
T Consensus 79 ~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSa~~g~gv~~l~~~I~ 158 (435)
T PRK00093 79 EEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEEADAYEFYSLGLGEPYPISAEHGRGIGDLLDAIL 158 (435)
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccchhhHHHHHhcCCCCCEEEEeeCCCCHHHHHHHHH
Confidence 3455556666777788888888889888765 44432222222334444443222222222111
Q ss_pred ------C-CCCCCCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccch
Q 005287 72 ------G-IPDLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRN 144 (704)
Q Consensus 72 ------~-~~~~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~ 144 (704)
. .......++|+|+|++|+|||||+|+|++.+...++..+++|++.........+..+.++||||+.......
T Consensus 159 ~~~~~~~~~~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~ 238 (435)
T PRK00093 159 EELPEEEEEDEEDEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVT 238 (435)
T ss_pred hhCCccccccccccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchh
Confidence 0 011235799999999999999999999999988888888999998888777899999999999997654321
Q ss_pred hhhhHHH-HHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 145 VKRNRKI-MLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 145 ~~~n~~i-l~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
...+.. .....++++ .+|++++|+++.... ...+..++..+.+. .+|+|+|+||+|+.
T Consensus 239 -~~~e~~~~~~~~~~~~--~ad~~ilViD~~~~~-~~~~~~i~~~~~~~-----~~~~ivv~NK~Dl~ 297 (435)
T PRK00093 239 -EGVEKYSVIRTLKAIE--RADVVLLVIDATEGI-TEQDLRIAGLALEA-----GRALVIVVNKWDLV 297 (435)
T ss_pred -hHHHHHHHHHHHHHHH--HCCEEEEEEeCCCCC-CHHHHHHHHHHHHc-----CCcEEEEEECccCC
Confidence 101111 111123343 679999998775432 23455666655543 48999999999987
No 18
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.59 E-value=1.4e-14 Score=151.84 Aligned_cols=119 Identities=22% Similarity=0.253 Sum_probs=88.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHh
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 160 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik 160 (704)
+|+|+|+||||||||+|+|+|...+.++..+++|+.........++.++.|+||||+.+... ..+..+.+....++.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~---~l~~~~~~~~~~~l~ 78 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKH---SLNRLMMKEARSAIG 78 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcc---hHHHHHHHHHHHHHh
Confidence 68999999999999999999999888888888998866655556677899999999976522 222333344444553
Q ss_pred cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 161 RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 161 ~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
.+|+++||++.+.... .+..++..+... ..|+++|+||+|+.
T Consensus 79 --~aDvvl~VvD~~~~~~--~~~~i~~~l~~~-----~~p~ilV~NK~Dl~ 120 (270)
T TIGR00436 79 --GVDLILFVVDSDQWNG--DGEFVLTKLQNL-----KRPVVLTRNKLDNK 120 (270)
T ss_pred --hCCEEEEEEECCCCCc--hHHHHHHHHHhc-----CCCEEEEEECeeCC
Confidence 6799999987765432 223445444432 47999999999986
No 19
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.58 E-value=2.5e-15 Score=161.19 Aligned_cols=128 Identities=25% Similarity=0.400 Sum_probs=93.3
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCcccc---CCCC----ccceEEEEEeeE--cCe--EEEEEECCCCCCcccchh
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETD---AFQP----ATDCIREVKGSV--NGI--KVTFIDTPGFLPSCVRNV 145 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs---~~~~----tT~~~~~~~~~~--~G~--~v~LIDTPGl~d~~~~~~ 145 (704)
+.+++|+++|.+|.||||+||+|++....... ...+ .|..+......+ +|. ++++||||||++.-.
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~id--- 97 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFID--- 97 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccc---
Confidence 57899999999999999999999998433321 1222 233333333333 343 678999999998732
Q ss_pred hhhHHHHHHHHHHH--------------------hcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEE
Q 005287 146 KRNRKIMLSVKKFI--------------------RRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVM 205 (704)
Q Consensus 146 ~~n~~il~~Ik~~i--------------------k~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVL 205 (704)
|...++.|..+| .+.++|+|||++++.+...+..|..+|+.|.+. .++|+|+
T Consensus 98 --Ns~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~------vNlIPVI 169 (373)
T COG5019 98 --NSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKR------VNLIPVI 169 (373)
T ss_pred --ccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcc------cCeeeee
Confidence 233333333332 234799999999998888778899999999987 8999999
Q ss_pred EccCCCCCCC
Q 005287 206 THSSSTLPEG 215 (704)
Q Consensus 206 TK~D~l~pde 215 (704)
.|+|.+.+++
T Consensus 170 ~KaD~lT~~E 179 (373)
T COG5019 170 AKADTLTDDE 179 (373)
T ss_pred eccccCCHHH
Confidence 9999997665
No 20
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.56 E-value=1.9e-14 Score=149.63 Aligned_cols=155 Identities=19% Similarity=0.309 Sum_probs=109.9
Q ss_pred CCCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHH
Q 005287 76 LDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSV 155 (704)
Q Consensus 76 ~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~I 155 (704)
...+++|+++|+||+|||||||+||+.+...++..+.+|..........++..++|+||||+++....+ .+....+
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D----~~~r~~~ 111 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKD----AEHRQLY 111 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhh----HHHHHHH
Confidence 346799999999999999999999988877777665566555555556678899999999999985433 4455555
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCCCCCCCC----C-Ccchhhhhhhc
Q 005287 156 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPEGSSG----Y-PFSYESYVTQC 230 (704)
Q Consensus 156 k~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~pde~~~----~-~~s~e~~i~q~ 230 (704)
..++. +.|+||++++.+..... .|..+++.+.-. ...+++++|+|.+|...|-..+. . ...++.|++++
T Consensus 112 ~d~l~--~~DLvL~l~~~~draL~-~d~~f~~dVi~~---~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k 185 (296)
T COG3596 112 RDYLP--KLDLVLWLIKADDRALG-TDEDFLRDVIIL---GLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEK 185 (296)
T ss_pred HHHhh--hccEEEEeccCCCcccc-CCHHHHHHHHHh---ccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHH
Confidence 66664 66999999887755432 455566555443 22389999999999998743221 1 22466777766
Q ss_pred cHHHHHHHHH
Q 005287 231 TDLVQQRIHQ 240 (704)
Q Consensus 231 ~~~Lq~~I~q 240 (704)
...+.+.|++
T Consensus 186 ~~~~~~~~q~ 195 (296)
T COG3596 186 AEALGRLFQE 195 (296)
T ss_pred HHHHHHHHhh
Confidence 6666666654
No 21
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.56 E-value=1e-14 Score=164.64 Aligned_cols=194 Identities=14% Similarity=0.119 Sum_probs=123.5
Q ss_pred cchhhHHHHHHhhcCCCCchHHHHHHHHHhh--------hcccccccchhhhhhcccchhHHHHhhccccC---------
Q 005287 9 EDLQVKFLRLLQRFGQSQDNILAVKVLYRLH--------LATLIRAGESDMKMVNLRSDRTRAIAREQEAT--------- 71 (704)
Q Consensus 9 ~~~rvk~lrl~~R~G~s~ed~~VaqvL~rl~--------lae~~~~~~~~~~~~~lg~d~a~~ia~~~~~~--------- 71 (704)
..+++.++.++...|.+..+..++..|++.. |++..........++.+++..+..+++.++..
T Consensus 116 ~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~~~~~~~~~g~~~~~~iSA~~g~gi~eL~~~i~ 195 (472)
T PRK03003 116 RTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEADAAALWSLGLGEPHPVSALHGRGVGDLLDAVL 195 (472)
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccchhhHHHHhcCCCCeEEEEcCCCCCcHHHHHHHH
Confidence 3455566666777777877888888887654 44432221122233334443333333333221
Q ss_pred --------CCCCCCCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccc
Q 005287 72 --------GIPDLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVR 143 (704)
Q Consensus 72 --------~~~~~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~ 143 (704)
........++|+++|++|||||||+|+|++.+...++..+++|++.......++|.++.|+||||+......
T Consensus 196 ~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~ 275 (472)
T PRK03003 196 AALPEVPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQ 275 (472)
T ss_pred hhcccccccccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccc
Confidence 001123468999999999999999999999988778888899998887777889999999999999654221
Q ss_pred hhhhhHHHHHHHH--HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 144 NVKRNRKIMLSVK--KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 144 ~~~~n~~il~~Ik--~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
. ...+....++ .++ ..+|++++|++++... ...+..++..+... .+|+|+|+||+|+..
T Consensus 276 ~--~~~e~~~~~~~~~~i--~~ad~vilV~Da~~~~-s~~~~~~~~~~~~~-----~~piIiV~NK~Dl~~ 336 (472)
T PRK03003 276 A--SGHEYYASLRTHAAI--EAAEVAVVLIDASEPI-SEQDQRVLSMVIEA-----GRALVLAFNKWDLVD 336 (472)
T ss_pred c--chHHHHHHHHHHHHH--hcCCEEEEEEeCCCCC-CHHHHHHHHHHHHc-----CCCEEEEEECcccCC
Confidence 1 1112222222 233 2689999998765432 22444555554432 489999999999863
No 22
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.54 E-value=7.9e-14 Score=139.60 Aligned_cols=128 Identities=19% Similarity=0.203 Sum_probs=96.9
Q ss_pred CCCCeEEEEEeCCCCcHHHHHHHHhCCC-CccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 76 LDFSIRILVLGKTGVGKSATINSIFDQT-KTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 76 ~~~~lrIlVVGkTGvGKSTLINsLlG~~-~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
.+...-|+++|++|||||||||+|+|+. .+.+|..|+.|+....+... + .+.+||.||++-..... ...+.+...
T Consensus 21 ~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~--~-~~~lVDlPGYGyAkv~k-~~~e~w~~~ 96 (200)
T COG0218 21 EDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD--D-ELRLVDLPGYGYAKVPK-EVKEKWKKL 96 (200)
T ss_pred CCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec--C-cEEEEeCCCcccccCCH-HHHHHHHHH
Confidence 3356789999999999999999999966 58888888999888876642 2 38999999999876654 444566677
Q ss_pred HHHHHhcC-CCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCCC
Q 005287 155 VKKFIRRS-PPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 213 (704)
Q Consensus 155 Ik~~ik~~-~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~p 213 (704)
+..|+... ....+++++++... ....|.++++++... ..|+++|+||+|.+..
T Consensus 97 i~~YL~~R~~L~~vvlliD~r~~-~~~~D~em~~~l~~~-----~i~~~vv~tK~DKi~~ 150 (200)
T COG0218 97 IEEYLEKRANLKGVVLLIDARHP-PKDLDREMIEFLLEL-----GIPVIVVLTKADKLKK 150 (200)
T ss_pred HHHHHhhchhheEEEEEEECCCC-CcHHHHHHHHHHHHc-----CCCeEEEEEccccCCh
Confidence 77888653 34455555444333 234688899988886 6899999999999854
No 23
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=3.8e-14 Score=156.22 Aligned_cols=137 Identities=22% Similarity=0.262 Sum_probs=102.1
Q ss_pred CCCCCCCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHH
Q 005287 72 GIPDLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKI 151 (704)
Q Consensus 72 ~~~~~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~i 151 (704)
..+.+...+.|+|+|+||||||||+|+|..+++++|++.++||++..+..++++|.+++|+||+|+++..... .....+
T Consensus 261 ~~e~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~-iE~~gI 339 (531)
T KOG1191|consen 261 EIERLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDG-IEALGI 339 (531)
T ss_pred hHHHhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCCh-hHHHhH
Confidence 3456677899999999999999999999999999999999999999999999999999999999999832222 222333
Q ss_pred HHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHh-ccc------ccccEEEEEEccCCCCC
Q 005287 152 MLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVF-GTA------IWFNTILVMTHSSSTLP 213 (704)
Q Consensus 152 l~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~f-G~~------~~k~vIVVLTK~D~l~p 213 (704)
.+.-++ + .++|+|++|+++.... ...|..+.+.|...- |.. ...+.|+|.||.|...+
T Consensus 340 ~rA~k~-~--~~advi~~vvda~~~~-t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 340 ERARKR-I--ERADVILLVVDAEESD-TESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred HHHHHH-H--hhcCEEEEEecccccc-cccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 333332 2 2789999998773321 124555555554431 111 12789999999999876
No 24
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=3.9e-14 Score=153.00 Aligned_cols=134 Identities=25% Similarity=0.349 Sum_probs=92.8
Q ss_pred CCCCCeEEEEEeCCCCcHHHHHHHHhCCCCccc------cCCCCccceEEEEEe--eEcCe--EEEEEECCCCCCcccch
Q 005287 75 DLDFSIRILVLGKTGVGKSATINSIFDQTKTET------DAFQPATDCIREVKG--SVNGI--KVTFIDTPGFLPSCVRN 144 (704)
Q Consensus 75 ~~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~v------s~~~~tT~~~~~~~~--~~~G~--~v~LIDTPGl~d~~~~~ 144 (704)
..++.++++++|.+|.|||||||+||+...... ..-...|..+..... +.+|. +++|||||||+|.-...
T Consensus 17 KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns 96 (366)
T KOG2655|consen 17 KKGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNS 96 (366)
T ss_pred hcCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccc
Confidence 345789999999999999999999999844332 111122444443333 33454 67899999999873221
Q ss_pred hhhhHH----HHHHHHHHH-----------hcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccC
Q 005287 145 VKRNRK----IMLSVKKFI-----------RRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSS 209 (704)
Q Consensus 145 ~~~n~~----il~~Ik~~i-----------k~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D 209 (704)
....- +-.....++ .+.++|+|||++...+...+..|..+|+.+... .|+|.|+.|+|
T Consensus 97 -~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~~------vNiIPVI~KaD 169 (366)
T KOG2655|consen 97 -NCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSKK------VNLIPVIAKAD 169 (366)
T ss_pred -ccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhcc------ccccceeeccc
Confidence 11111 112222332 233799999999988887777899999999987 79999999999
Q ss_pred CCCCCC
Q 005287 210 STLPEG 215 (704)
Q Consensus 210 ~l~pde 215 (704)
.+.+++
T Consensus 170 ~lT~~E 175 (366)
T KOG2655|consen 170 TLTKDE 175 (366)
T ss_pred cCCHHH
Confidence 997665
No 25
>PRK00089 era GTPase Era; Reviewed
Probab=99.53 E-value=1e-13 Score=146.35 Aligned_cols=123 Identities=21% Similarity=0.234 Sum_probs=88.4
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
.+..|+|+|+||||||||+|+|+|...+.++..+.+|+.........++.+++++||||+.+... ..++.+......
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~---~l~~~~~~~~~~ 80 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKR---ALNRAMNKAAWS 80 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchh---HHHHHHHHHHHH
Confidence 35689999999999999999999999888887777777665554444668999999999976532 222333333333
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
.+ ..+|+++||++.+.. ....+..+++.+.. ...|+++|+||+|+.
T Consensus 81 ~~--~~~D~il~vvd~~~~-~~~~~~~i~~~l~~-----~~~pvilVlNKiDl~ 126 (292)
T PRK00089 81 SL--KDVDLVLFVVDADEK-IGPGDEFILEKLKK-----VKTPVILVLNKIDLV 126 (292)
T ss_pred HH--hcCCEEEEEEeCCCC-CChhHHHHHHHHhh-----cCCCEEEEEECCcCC
Confidence 44 367999999877652 12244455555543 247999999999987
No 26
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.52 E-value=2.4e-13 Score=127.20 Aligned_cols=122 Identities=22% Similarity=0.272 Sum_probs=86.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 159 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~i 159 (704)
++|+++|++|+|||||+|+|++...+.++..+++|.+.........+.++.++||||+.+.... ...........++
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~---~~~~~~~~~~~~~ 78 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDE---IEKIGIERAREAI 78 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcch---HHHHHHHHHHHHH
Confidence 6899999999999999999999887666777788888777777778889999999999765321 1111112222333
Q ss_pred hcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCCCC
Q 005287 160 RRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPE 214 (704)
Q Consensus 160 k~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~pd 214 (704)
.++|++++|++++.... ..+..++.. ...+|+++|+||+|+....
T Consensus 79 --~~~~~~v~v~d~~~~~~-~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~ 123 (157)
T cd04164 79 --EEADLVLFVIDASRGLD-EEDLEILEL-------PADKPIIVVLNKSDLLPDS 123 (157)
T ss_pred --hhCCEEEEEEECCCCCC-HHHHHHHHh-------hcCCCEEEEEEchhcCCcc
Confidence 26799999988774321 123333322 2248999999999987543
No 27
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.52 E-value=3e-13 Score=126.58 Aligned_cols=122 Identities=20% Similarity=0.228 Sum_probs=85.4
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHH
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 158 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ 158 (704)
.++|+++|.+|+|||||+|+|+|...+.......+|+..........+..+.++||||+...... ............
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~---~~~~~~~~~~~~ 79 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKK---LGERMVKAAWSA 79 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHH---HHHHHHHHHHHH
Confidence 57899999999999999999999987766655566666655555556788999999999765321 112222222233
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 159 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 159 ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
+ ..+|++++|++..... ...+..+.+.+... ..|.++|+||+|+.
T Consensus 80 ~--~~~d~i~~v~d~~~~~-~~~~~~~~~~~~~~-----~~~~iiv~nK~Dl~ 124 (168)
T cd04163 80 L--KDVDLVLFVVDASEPI-GEGDEFILELLKKS-----KTPVILVLNKIDLV 124 (168)
T ss_pred H--HhCCEEEEEEECCCcc-CchHHHHHHHHHHh-----CCCEEEEEEchhcc
Confidence 3 3679999998776541 22444555555443 47999999999987
No 28
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.51 E-value=3e-14 Score=168.18 Aligned_cols=195 Identities=13% Similarity=0.112 Sum_probs=127.6
Q ss_pred ccchhhHHHHHHhhcCCCCchHHHHHHHHHhh--------hcccccccchhhhhhcccchhHHHHhhccccCC-------
Q 005287 8 IEDLQVKFLRLLQRFGQSQDNILAVKVLYRLH--------LATLIRAGESDMKMVNLRSDRTRAIAREQEATG------- 72 (704)
Q Consensus 8 i~~~rvk~lrl~~R~G~s~ed~~VaqvL~rl~--------lae~~~~~~~~~~~~~lg~d~a~~ia~~~~~~~------- 72 (704)
++.+++.++.++.+.|+++.+..++..|++.+ +++..........++.+++...+.+++.++..-
T Consensus 352 ~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~GI~eLl~~i 431 (712)
T PRK09518 352 VSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEYDAAEFWKLGLGEPYPISAMHGRGVGDLLDEA 431 (712)
T ss_pred HHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchhhHHHHHHcCCCCeEEEECCCCCCchHHHHHH
Confidence 35566777888888899998888888887655 344332222223344444443333333333210
Q ss_pred -------CC-----CCCCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCc
Q 005287 73 -------IP-----DLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPS 140 (704)
Q Consensus 73 -------~~-----~~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~ 140 (704)
.. .....++|+++|++|||||||+|+|++.+...++..+++|++.......++|.++.||||||+...
T Consensus 432 ~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~ 511 (712)
T PRK09518 432 LDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRR 511 (712)
T ss_pred HHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccC
Confidence 00 012358999999999999999999999988778888899998887777889999999999999754
Q ss_pred ccchhhhhHHHHHHHH--HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 141 CVRNVKRNRKIMLSVK--KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 141 ~~~~~~~n~~il~~Ik--~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
.... ...+....++ .++ ..+|++++|++..... ...+..++..+.+. .+|+|+|+||+|+..
T Consensus 512 ~~~~--~~~e~~~~~r~~~~i--~~advvilViDat~~~-s~~~~~i~~~~~~~-----~~piIiV~NK~DL~~ 575 (712)
T PRK09518 512 QHKL--TGAEYYSSLRTQAAI--ERSELALFLFDASQPI-SEQDLKVMSMAVDA-----GRALVLVFNKWDLMD 575 (712)
T ss_pred cccc--hhHHHHHHHHHHHHh--hcCCEEEEEEECCCCC-CHHHHHHHHHHHHc-----CCCEEEEEEchhcCC
Confidence 3211 1112222221 223 3679999998765432 22445555544432 489999999999863
No 29
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.51 E-value=3.2e-13 Score=132.31 Aligned_cols=127 Identities=19% Similarity=0.237 Sum_probs=86.1
Q ss_pred CCCCeEEEEEeCCCCcHHHHHHHHhCCC-CccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 76 LDFSIRILVLGKTGVGKSATINSIFDQT-KTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 76 ~~~~lrIlVVGkTGvGKSTLINsLlG~~-~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
....++|+|+|.+|+|||||+|+|++.. ...++...++|.++..+.. + ..+.+|||||+....... .........
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~liDtpG~~~~~~~~-~~~~~~~~~ 90 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N-DGFRLVDLPGYGYAKVSK-EEKEKWQKL 90 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C-CcEEEEeCCCCccccCCh-hHHHHHHHH
Confidence 3567899999999999999999999986 5556666777877765543 2 379999999997654322 112233333
Q ss_pred HHHHHhcC-CCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 155 VKKFIRRS-PPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 155 Ik~~ik~~-~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
+..+++.. .+|++++|++.... ....+..+++.+... .+|+++|+||+|+..
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~-~~~~~~~~~~~~~~~-----~~pviiv~nK~D~~~ 143 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHP-LKELDLEMLEWLRER-----GIPVLIVLTKADKLK 143 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCC-CCHHHHHHHHHHHHc-----CCCEEEEEECcccCC
Confidence 34455432 56899999776542 222444455555432 589999999999873
No 30
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.49 E-value=3e-13 Score=126.73 Aligned_cols=119 Identities=18% Similarity=0.164 Sum_probs=85.1
Q ss_pred EEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcC
Q 005287 83 LVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRS 162 (704)
Q Consensus 83 lVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~ 162 (704)
+++|.+|||||||+|+|++.....++..+++|.+.........+..+.++||||+.+... .....+......+++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~---~~~~~~~~~~~~~~~-- 75 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE---GISKEIREQAELAIE-- 75 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchh---HHHHHHHHHHHHHHH--
Confidence 489999999999999999987666666778888777777778899999999999976521 112223333333343
Q ss_pred CCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 163 PPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 163 ~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
.+|++++|++..... ...+..+.+.+.+. ..|+++|+||+|+..
T Consensus 76 ~~d~ii~v~d~~~~~-~~~~~~~~~~~~~~-----~~piiiv~nK~D~~~ 119 (157)
T cd01894 76 EADVILFVVDGREGL-TPADEEIAKYLRKS-----KKPVILVVNKVDNIK 119 (157)
T ss_pred hCCEEEEEEeccccC-CccHHHHHHHHHhc-----CCCEEEEEECcccCC
Confidence 679999997764321 12344555555543 489999999999874
No 31
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.48 E-value=2.4e-13 Score=130.03 Aligned_cols=125 Identities=12% Similarity=0.041 Sum_probs=79.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCe-EEEEEECCCCCCcccchhhhhHHHHHHHHHHH
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI-KVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 159 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~-~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~i 159 (704)
+|+++|++|||||||+|+|.+... .++..+++|...........+. ++.++||||+.+..... ..+.....+.+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~----~~~~~~~~~~~ 76 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP-KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEG----KGLGHRFLRHI 76 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc-cccCCCccccCCcceEEEcCCCCeEEEEecCcccCccccc----CCchHHHHHHH
Confidence 689999999999999999998764 4555556676665555556666 99999999996542211 11112222222
Q ss_pred hcCCCCEEEEEEeccCc-cCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 160 RRSPPDIVLYFERLDLI-SMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 160 k~~~~dvVL~Vi~ld~~-t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
. .+|++++|+++... ..-.....+.+.+.+.......+|+++|+||+|+..
T Consensus 77 ~--~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~ 128 (170)
T cd01898 77 E--RTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLD 128 (170)
T ss_pred H--hCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCC
Confidence 2 57999999876543 110011233344443321123589999999999864
No 32
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.48 E-value=3.6e-13 Score=149.42 Aligned_cols=122 Identities=17% Similarity=0.162 Sum_probs=93.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHh
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 160 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik 160 (704)
+|+|+|++|||||||+|+|++...+.++..+++|++.......+.|..+.||||||+.... + .....+......+++
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~--~-~~~~~~~~~~~~~~~ 77 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDD--D-GLDKQIREQAEIAIE 77 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcc--h-hHHHHHHHHHHHHHh
Confidence 4899999999999999999999988888888999999988888999999999999996431 1 122333344444554
Q ss_pred cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCCC
Q 005287 161 RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 213 (704)
Q Consensus 161 ~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~p 213 (704)
.+|++++|++.... ....+..+.+.+.+. .+|+++|+||+|....
T Consensus 78 --~ad~vl~vvD~~~~-~~~~d~~i~~~l~~~-----~~piilVvNK~D~~~~ 122 (429)
T TIGR03594 78 --EADVILFVVDGREG-LTPEDEEIAKWLRKS-----GKPVILVANKIDGKKE 122 (429)
T ss_pred --hCCEEEEEEeCCCC-CCHHHHHHHHHHHHh-----CCCEEEEEECccCCcc
Confidence 67999999776432 223456677777654 5899999999998743
No 33
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.47 E-value=8.1e-13 Score=125.15 Aligned_cols=125 Identities=23% Similarity=0.235 Sum_probs=85.4
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHH-HHHHH
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIM-LSVKK 157 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il-~~Ik~ 157 (704)
+++|+++|.+|+|||||+|+|++.........+++|...........+..+.+|||||+.+..... ...+... .....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~-~~~e~~~~~~~~~ 80 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVE-EGIEKYSVLRTLK 80 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchh-ccHHHHHHHHHHH
Confidence 589999999999999999999998876666667777777766777788899999999997653211 1111110 11112
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
++ ..+|++++|++...... ..+..++..+... ..|+++|+||+|+..
T Consensus 81 ~~--~~~d~vi~v~d~~~~~~-~~~~~~~~~~~~~-----~~~~iiv~nK~Dl~~ 127 (174)
T cd01895 81 AI--ERADVVLLVIDATEGIT-EQDLRIAGLILEE-----GKALVIVVNKWDLVE 127 (174)
T ss_pred HH--hhcCeEEEEEeCCCCcc-hhHHHHHHHHHhc-----CCCEEEEEeccccCC
Confidence 22 36799999987654322 2333444433322 479999999999874
No 34
>PRK15494 era GTPase Era; Provisional
Probab=99.44 E-value=1.1e-12 Score=142.32 Aligned_cols=124 Identities=15% Similarity=0.187 Sum_probs=87.5
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
...++|+++|.+|||||||+|+|+|...+.+++.+.+|++........++.++.||||||+.+... .....+.+...
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~---~l~~~~~r~~~ 126 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKG---SLEKAMVRCAW 126 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcc---cHHHHHHHHHH
Confidence 345799999999999999999999998887777777888776666778899999999999965422 12223333333
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 157 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
.++. .+|++++|++.... ....+..++..+... ..|.|+|+||+|+.
T Consensus 127 ~~l~--~aDvil~VvD~~~s-~~~~~~~il~~l~~~-----~~p~IlViNKiDl~ 173 (339)
T PRK15494 127 SSLH--SADLVLLIIDSLKS-FDDITHNILDKLRSL-----NIVPIFLLNKIDIE 173 (339)
T ss_pred HHhh--hCCEEEEEEECCCC-CCHHHHHHHHHHHhc-----CCCEEEEEEhhcCc
Confidence 3343 67999999764331 112333455555432 35788999999974
No 35
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.43 E-value=6.7e-13 Score=146.61 Aligned_cols=124 Identities=13% Similarity=0.086 Sum_probs=85.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC-eEEEEEECCCCCCcccchhhhhHHHHHHHHHHH
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG-IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 159 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G-~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~i 159 (704)
.|+|||+||||||||+|+|++... +++..+.||+..........+ .+++|+||||+.............+ .+++
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~----l~~i 235 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRF----LKHL 235 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc-cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHH----HHHH
Confidence 699999999999999999999774 778888999988888777664 5799999999987543221122223 2344
Q ss_pred hcCCCCEEEEEEeccCcc-CC--CCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 160 RRSPPDIVLYFERLDLIS-MG--FSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 160 k~~~~dvVL~Vi~ld~~t-~~--~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
. +++++++|+++.... .. .....+++.+...-..-..+|.|+|+||+|+.
T Consensus 236 ~--radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~ 288 (390)
T PRK12298 236 E--RCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLL 288 (390)
T ss_pred H--hCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccC
Confidence 3 569999998765321 10 11223444444321111247999999999976
No 36
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.42 E-value=1e-12 Score=138.03 Aligned_cols=131 Identities=19% Similarity=0.203 Sum_probs=101.3
Q ss_pred CCCCCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHH
Q 005287 74 PDLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIML 153 (704)
Q Consensus 74 ~~~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~ 153 (704)
++....++|+|||.||||||||.|.++|..++.++.-..||+.......+-+..+++|+||||+...... +.....+.
T Consensus 67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~--r~~~l~~s 144 (379)
T KOG1423|consen 67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMH--RRHHLMMS 144 (379)
T ss_pred hhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchh--hhHHHHHH
Confidence 3456789999999999999999999999999999988888988888888888999999999999877432 22222222
Q ss_pred ---HHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCCC
Q 005287 154 ---SVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 213 (704)
Q Consensus 154 ---~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~p 213 (704)
...+.+. .+|+|++++++.. +.......++..+.+.. ..|.|+|+||.|...+
T Consensus 145 ~lq~~~~a~q--~AD~vvVv~Das~-tr~~l~p~vl~~l~~ys----~ips~lvmnkid~~k~ 200 (379)
T KOG1423|consen 145 VLQNPRDAAQ--NADCVVVVVDASA-TRTPLHPRVLHMLEEYS----KIPSILVMNKIDKLKQ 200 (379)
T ss_pred hhhCHHHHHh--hCCEEEEEEeccC-CcCccChHHHHHHHHHh----cCCceeeccchhcchh
Confidence 2223332 6899999987765 34456667888888773 3789999999998854
No 37
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.41 E-value=2.8e-12 Score=143.81 Aligned_cols=125 Identities=23% Similarity=0.290 Sum_probs=89.6
Q ss_pred CCCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHH
Q 005287 76 LDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSV 155 (704)
Q Consensus 76 ~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~I 155 (704)
....++|+++|+||||||||+|+|++...+.++..+++|++.......++|.++.++||||+.+.... .....+ ...
T Consensus 200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~--ie~~gi-~~~ 276 (442)
T TIGR00450 200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADF--VERLGI-EKS 276 (442)
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhH--HHHHHH-HHH
Confidence 34568999999999999999999999988888888999999888888889999999999999764210 000111 111
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 156 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 156 k~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
..+++ .+|++++|++.+.... ..+. ++..+.. ..+|+|+|+||+|+..
T Consensus 277 ~~~~~--~aD~il~V~D~s~~~s-~~~~-~l~~~~~-----~~~piIlV~NK~Dl~~ 324 (442)
T TIGR00450 277 FKAIK--QADLVIYVLDASQPLT-KDDF-LIIDLNK-----SKKPFILVLNKIDLKI 324 (442)
T ss_pred HHHHh--hCCEEEEEEECCCCCC-hhHH-HHHHHhh-----CCCCEEEEEECccCCC
Confidence 23333 6799999987754321 1222 3333221 2479999999999864
No 38
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.41 E-value=1.4e-12 Score=138.45 Aligned_cols=127 Identities=20% Similarity=0.223 Sum_probs=95.0
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
...+|+|.|.||||||||+++|++.+ ..+.+++-||+.+....++.++.++.+|||||+.|...++ .|.--.+++.
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~Ak-pEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~E--rN~IE~qAi~- 242 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAK-PEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEE--RNEIERQAIL- 242 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCC-CccCCCCccccceeEeeeecCCceEEEecCCcccCCChHH--hcHHHHHHHH-
Confidence 45699999999999999999999876 4456788899999999999999999999999999986643 3322223322
Q ss_pred HHhcCCCCEEEEEEeccCccCC--CCcHHHHHHHHHHhcccccccEEEEEEccCCCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMG--FSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 213 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~--~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~p 213 (704)
+++ .-.++|||+++.+....- .....+++.+...|. .|+++|+||+|...+
T Consensus 243 AL~-hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~----~p~v~V~nK~D~~~~ 295 (346)
T COG1084 243 ALR-HLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK----APIVVVINKIDIADE 295 (346)
T ss_pred HHH-HhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC----CCeEEEEecccccch
Confidence 221 123789999877643311 134467888888874 799999999998743
No 39
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.40 E-value=1.9e-12 Score=121.92 Aligned_cols=115 Identities=15% Similarity=0.285 Sum_probs=79.4
Q ss_pred EEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCC
Q 005287 84 VLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSP 163 (704)
Q Consensus 84 VVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~ 163 (704)
|+|.+|||||||+|+|++.. +.++..+++|.+.......+.+..+.+|||||+.+..... ....+. ..++....
T Consensus 1 l~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~--~~~~~~---~~~~~~~~ 74 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYS--EDEKVA---RDFLLGEK 74 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCC--hhHHHH---HHHhcCCC
Confidence 58999999999999999976 5556667778877777777788999999999997643211 111221 22332247
Q ss_pred CCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 164 PDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 164 ~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
+|++++|++..... ........+.+ ..+|+++|+||+|+..
T Consensus 75 ~d~vi~v~d~~~~~---~~~~~~~~~~~-----~~~~~iiv~NK~Dl~~ 115 (158)
T cd01879 75 PDLIVNVVDATNLE---RNLYLTLQLLE-----LGLPVVVALNMIDEAE 115 (158)
T ss_pred CcEEEEEeeCCcch---hHHHHHHHHHH-----cCCCEEEEEehhhhcc
Confidence 89999997765432 23333333333 2489999999999864
No 40
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.39 E-value=2.4e-12 Score=128.81 Aligned_cols=120 Identities=20% Similarity=0.185 Sum_probs=77.5
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCcccc----CCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETD----AFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs----~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
+++|+|+|++|||||||+|+|+|....... ....+|.....+.. .....+.++||||+.+.... .+.+++.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~l~DtpG~~~~~~~----~~~~l~~ 75 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH-PKFPNVTLWDLPGIGSTAFP----PDDYLEE 75 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec-CCCCCceEEeCCCCCcccCC----HHHHHHH
Confidence 478999999999999999999996533221 11123433333321 12457899999999875321 1233222
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCCCCC
Q 005287 155 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPEG 215 (704)
Q Consensus 155 Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~pde 215 (704)
+.....|++++|.+ +.. ...+..+++.+.+. .+++++|+||+|...+.+
T Consensus 76 ----~~~~~~d~~l~v~~-~~~--~~~d~~~~~~l~~~-----~~~~ilV~nK~D~~~~~~ 124 (197)
T cd04104 76 ----MKFSEYDFFIIISS-TRF--SSNDVKLAKAIQCM-----GKKFYFVRTKVDRDLSNE 124 (197)
T ss_pred ----hCccCcCEEEEEeC-CCC--CHHHHHHHHHHHHh-----CCCEEEEEecccchhhhh
Confidence 22236788888843 222 34677788877775 478999999999986543
No 41
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.38 E-value=4.1e-12 Score=141.47 Aligned_cols=121 Identities=18% Similarity=0.168 Sum_probs=91.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 159 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~i 159 (704)
.+|+|+|++|||||||+|+|++...+.++..+++|++.......+.|..+.||||||+.+... .....+......++
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~---~~~~~~~~~~~~~~ 78 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDD---GFEKQIREQAELAI 78 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcch---hHHHHHHHHHHHHH
Confidence 479999999999999999999999888888888999988888888999999999999986311 11122333333344
Q ss_pred hcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 160 RRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 160 k~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
. .+|+++||++.... ....+..+.+.+.+. .+|+|+|+||+|..
T Consensus 79 ~--~ad~il~vvd~~~~-~~~~~~~~~~~l~~~-----~~piilv~NK~D~~ 122 (435)
T PRK00093 79 E--EADVILFVVDGRAG-LTPADEEIAKILRKS-----NKPVILVVNKVDGP 122 (435)
T ss_pred H--hCCEEEEEEECCCC-CCHHHHHHHHHHHHc-----CCcEEEEEECccCc
Confidence 3 67999999876542 122455666666654 58999999999954
No 42
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.38 E-value=4.9e-12 Score=142.99 Aligned_cols=122 Identities=19% Similarity=0.242 Sum_probs=91.3
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHH
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 158 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ 158 (704)
..+|+|||++|||||||+|+|++...+.++..+++|++.......+.|..+.||||||+..... .....+......+
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~---~~~~~~~~~~~~~ 114 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAK---GLQASVAEQAEVA 114 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcch---hHHHHHHHHHHHH
Confidence 3689999999999999999999988777877888898888888888999999999999863211 1122333333344
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 159 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 159 ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
++ .+|++|+|++..... ...+..+...+... .+|+|+|+||+|+.
T Consensus 115 ~~--~aD~il~VvD~~~~~-s~~~~~i~~~l~~~-----~~piilV~NK~Dl~ 159 (472)
T PRK03003 115 MR--TADAVLFVVDATVGA-TATDEAVARVLRRS-----GKPVILAANKVDDE 159 (472)
T ss_pred HH--hCCEEEEEEECCCCC-CHHHHHHHHHHHHc-----CCCEEEEEECccCC
Confidence 44 679999998776432 12355566666542 58999999999975
No 43
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.38 E-value=1.5e-12 Score=124.79 Aligned_cols=122 Identities=17% Similarity=0.130 Sum_probs=77.5
Q ss_pred EEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEc-CeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcC
Q 005287 84 VLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVN-GIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRS 162 (704)
Q Consensus 84 VVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~-G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~ 162 (704)
++|++|||||||+|+|++.+. .++..+++|.++......+. +.++.|+||||+.+..... +.+...+...++
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~----~~~~~~~~~~~~-- 73 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEG----RGLGNQFLAHIR-- 73 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcC----CCccHHHHHHHh--
Confidence 589999999999999999876 45566677777766666677 8999999999996532211 111112222332
Q ss_pred CCCEEEEEEeccCcc-----CCCCcH-HHHHHHHHHhcc-----cccccEEEEEEccCCCC
Q 005287 163 PPDIVLYFERLDLIS-----MGFSDF-PLLKLMTEVFGT-----AIWFNTILVMTHSSSTL 212 (704)
Q Consensus 163 ~~dvVL~Vi~ld~~t-----~~~~D~-~lLk~L~~~fG~-----~~~k~vIVVLTK~D~l~ 212 (704)
.+|++++|++..... ....+. .....+...... ...+|+++|+||+|+..
T Consensus 74 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 134 (176)
T cd01881 74 RADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDD 134 (176)
T ss_pred ccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCc
Confidence 579999998765431 101111 122223222111 13589999999999874
No 44
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.37 E-value=3.8e-12 Score=138.87 Aligned_cols=125 Identities=17% Similarity=0.126 Sum_probs=82.2
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeE-cCeEEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSV-NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~-~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
..++|+++|.||||||||+|+|++.+ +.+.+.+++|.+.......+ +|.++.|+||||+...... ...+.+...+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~--~lie~f~~tl- 263 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPH--ELVAAFRATL- 263 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCH--HHHHHHHHHH-
Confidence 45899999999999999999999987 55566677888877666666 6789999999999432111 1111121111
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHH-HHHHHHHHhcccccccEEEEEEccCCC
Q 005287 157 KFIRRSPPDIVLYFERLDLISMGFSDFP-LLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~t~~~~D~~-lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
..+ ..+|++++|++++.... ..+.. +...+.. ++. ..+|+|+|+||+|+.
T Consensus 264 e~~--~~ADlil~VvD~s~~~~-~~~~~~~~~~L~~-l~~-~~~piIlV~NK~Dl~ 314 (351)
T TIGR03156 264 EEV--READLLLHVVDASDPDR-EEQIEAVEKVLEE-LGA-EDIPQLLVYNKIDLL 314 (351)
T ss_pred HHH--HhCCEEEEEEECCCCch-HHHHHHHHHHHHH-hcc-CCCCEEEEEEeecCC
Confidence 223 26799999987754321 11211 2233333 221 247999999999986
No 45
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.37 E-value=7.1e-12 Score=119.82 Aligned_cols=124 Identities=19% Similarity=0.220 Sum_probs=78.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHh
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 160 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik 160 (704)
+|+++|.+|||||||+|+|++... .++..+.+|..+........+.++.|+||||+.+..... .+.-....+. .+.
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~~~~-~~~ 77 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKP-EVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEE--RNTIEMQAIT-ALA 77 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCC-ccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccC--CchHHHHHHH-HHH
Confidence 799999999999999999999764 333445567766666656678899999999996542211 1100011111 111
Q ss_pred cCCCCEEEEEEeccCccC-C-CCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 161 RSPPDIVLYFERLDLISM-G-FSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 161 ~~~~dvVL~Vi~ld~~t~-~-~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
...|++++|+++..... . .....+++.+...+ ...|+|+|+||+|+..
T Consensus 78 -~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~---~~~pvilv~NK~Dl~~ 127 (168)
T cd01897 78 -HLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF---KNKPVIVVLNKIDLLT 127 (168)
T ss_pred -hccCcEEEEEeCCcccccchHHHHHHHHHHHhhc---CcCCeEEEEEccccCc
Confidence 13588999977654321 1 11123444554433 2479999999999864
No 46
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.37 E-value=3.8e-12 Score=138.06 Aligned_cols=123 Identities=14% Similarity=0.145 Sum_probs=85.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeE-cCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHH
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSV-NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 159 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~-~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~i 159 (704)
.|+|||.||||||||+|+|++.. ..+++++.+|..+......+ ++.+++|+||||+.+..... ..+...+.+++
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~-~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~----~gLg~~flrhi 234 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEG----AGLGHRFLKHI 234 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCC-CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCcc----ccHHHHHHHHh
Confidence 68999999999999999999865 44677788898888777776 56789999999998654322 22333333444
Q ss_pred hcCCCCEEEEEEeccCccCCCCcH-HHHHHHHHHhccc-ccccEEEEEEccCCCC
Q 005287 160 RRSPPDIVLYFERLDLISMGFSDF-PLLKLMTEVFGTA-IWFNTILVMTHSSSTL 212 (704)
Q Consensus 160 k~~~~dvVL~Vi~ld~~t~~~~D~-~lLk~L~~~fG~~-~~k~vIVVLTK~D~l~ 212 (704)
+ +.+++++|++++.... ..+. .+...|... ... ..+|+++|+||+|+..
T Consensus 235 e--~a~vlI~ViD~s~~~s-~e~~~~~~~EL~~~-~~~L~~kp~IIV~NKiDL~~ 285 (335)
T PRK12299 235 E--RTRLLLHLVDIEAVDP-VEDYKTIRNELEKY-SPELADKPRILVLNKIDLLD 285 (335)
T ss_pred h--hcCEEEEEEcCCCCCC-HHHHHHHHHHHHHh-hhhcccCCeEEEEECcccCC
Confidence 3 5689999987764321 1222 233334332 221 3589999999999863
No 47
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.37 E-value=4.8e-12 Score=142.29 Aligned_cols=124 Identities=21% Similarity=0.234 Sum_probs=88.2
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
...++|+++|.||||||||+|+|++.+.+.++..+++|++.......++|.++.++||||+.+.... .....+... .
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~--ie~~gi~~~-~ 289 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDE--VEKIGIERS-R 289 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccH--HHHHHHHHH-H
Confidence 3468999999999999999999999988888888899999888888889999999999999754210 111111111 1
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCCC
Q 005287 157 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 213 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~p 213 (704)
.++ ..+|++++|++.+.... ..+..++ .. ....|+++|+||+|+..+
T Consensus 290 ~~~--~~aD~il~VvD~s~~~s-~~~~~~l---~~----~~~~piiiV~NK~DL~~~ 336 (449)
T PRK05291 290 EAI--EEADLVLLVLDASEPLT-EEDDEIL---EE----LKDKPVIVVLNKADLTGE 336 (449)
T ss_pred HHH--HhCCEEEEEecCCCCCC-hhHHHHH---Hh----cCCCCcEEEEEhhhcccc
Confidence 223 26799999987754321 1232222 22 224799999999998754
No 48
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.36 E-value=1.3e-11 Score=121.28 Aligned_cols=127 Identities=19% Similarity=0.235 Sum_probs=81.3
Q ss_pred CCCCeEEEEEeCCCCcHHHHHHHHhCCC-CccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 76 LDFSIRILVLGKTGVGKSATINSIFDQT-KTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 76 ~~~~lrIlVVGkTGvGKSTLINsLlG~~-~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
.+..++|+|+|.+|||||||+|+|++.. ...++...++|..+..+.. +.++.||||||+....... .........
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~-~~~~~~~~~ 96 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSK-EEKEKWQKL 96 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCc-hHHHHHHHH
Confidence 3456899999999999999999999975 5555656667766654442 4789999999987543221 111222233
Q ss_pred HHHHHhcC-CCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 155 VKKFIRRS-PPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 155 Ik~~ik~~-~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
+..+++.. ..+++++|++.+.. ....+..+++.+.. ...++++|+||+|++.
T Consensus 97 ~~~~~~~~~~~~~~~~v~d~~~~-~~~~~~~i~~~l~~-----~~~~~iiv~nK~Dl~~ 149 (196)
T PRK00454 97 IEEYLRTRENLKGVVLLIDSRHP-LKELDLQMIEWLKE-----YGIPVLIVLTKADKLK 149 (196)
T ss_pred HHHHHHhCccceEEEEEEecCCC-CCHHHHHHHHHHHH-----cCCcEEEEEECcccCC
Confidence 33444322 45677777654432 11233344555433 2478999999999873
No 49
>PRK04213 GTP-binding protein; Provisional
Probab=99.32 E-value=1.9e-11 Score=121.39 Aligned_cols=124 Identities=14% Similarity=0.134 Sum_probs=76.0
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
..++|+++|.+|||||||+|+|++.. +.++..+++|.....+. .. ++.+|||||++....-.....+.+...+..
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~t~~~~~~~--~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKK-VRVGKRPGVTRKPNHYD--WG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVR 82 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCceeeCceEEe--ec--ceEEEeCCccccccccCHHHHHHHHHHHHH
Confidence 46899999999999999999999976 44555556666554433 22 689999999864322110112233333333
Q ss_pred HHhc--CCCCEEEEEEeccCccC---C-------CCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 158 FIRR--SPPDIVLYFERLDLISM---G-------FSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 158 ~ik~--~~~dvVL~Vi~ld~~t~---~-------~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
++.. ..++++++|++.+.... . ..+..++..+.. ...|+++|+||+|+.
T Consensus 83 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~p~iiv~NK~Dl~ 143 (201)
T PRK04213 83 YIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE-----LGIPPIVAVNKMDKI 143 (201)
T ss_pred HHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH-----cCCCeEEEEECcccc
Confidence 3331 25688888876643210 0 012233433332 247999999999975
No 50
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.32 E-value=4.4e-13 Score=146.42 Aligned_cols=223 Identities=17% Similarity=0.129 Sum_probs=122.4
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCC-----CCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQ-----TKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIM 152 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~-----~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il 152 (704)
.+++|+|+|.+|+|||||||+|.|- ..+.++ ...+|.+...|.. ..-.++++||.||++..... ...++
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tG-v~etT~~~~~Y~~-p~~pnv~lWDlPG~gt~~f~----~~~Yl 107 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTG-VVETTMEPTPYPH-PKFPNVTLWDLPGIGTPNFP----PEEYL 107 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SS-SHSCCTS-EEEE--SS-TTEEEEEE--GGGSS------HHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCC-CCcCCCCCeeCCC-CCCCCCeEEeCCCCCCCCCC----HHHHH
Confidence 4699999999999999999999773 222222 2346777777763 23346899999999877543 24454
Q ss_pred HHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCCCCCCCCCCcchhhhhhhccH
Q 005287 153 LSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPEGSSGYPFSYESYVTQCTD 232 (704)
Q Consensus 153 ~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~pde~~~~~~s~e~~i~q~~~ 232 (704)
+.+. -...|+++++. .++++ ..|..+++.+.+. .+++++|-||.|.-...+....|..+.+ ++...
T Consensus 108 ~~~~----~~~yD~fiii~-s~rf~--~ndv~La~~i~~~-----gK~fyfVRTKvD~Dl~~~~~~~p~~f~~--e~~L~ 173 (376)
T PF05049_consen 108 KEVK----FYRYDFFIIIS-SERFT--ENDVQLAKEIQRM-----GKKFYFVRTKVDSDLYNERRRKPRTFNE--EKLLQ 173 (376)
T ss_dssp HHTT----GGG-SEEEEEE-SSS----HHHHHHHHHHHHT-----T-EEEEEE--HHHHHHHHHCC-STT--H--HTHHH
T ss_pred HHcc----ccccCEEEEEe-CCCCc--hhhHHHHHHHHHc-----CCcEEEEEecccccHhhhhccCCcccCH--HHHHH
Confidence 4432 23678877663 34444 3788888888886 6899999999996211111112222211 11123
Q ss_pred HHHHHHHHHhcccCccchh-hhhccCCcc-----ccCccCcccCCCccchHHHHHhhhhhhhhhhhHHhhhccccccccC
Q 005287 233 LVQQRIHQAVSDARLENQV-LLVENHPQC-----RRNVKGEQILPNGQIWKSRFLLLCICTKVLGDANALLGFRDSIELG 306 (704)
Q Consensus 233 ~Lq~~I~q~~~d~~~~~pv-~lVen~p~c-----~~N~~ge~vLP~~~~W~~~Ll~~c~s~ki~~eA~~~lk~~~~~~~~ 306 (704)
.+++.+.+......+..|. -+|.+...+ .-...-++.||....-.-.+.+..++..++++....++.+.+....
T Consensus 174 ~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~~fllsLp~is~~~I~kKk~~lk~~Iw~~Al 253 (376)
T PF05049_consen 174 EIRENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRHAFLLSLPNISEAAIEKKKESLKQKIWLEAL 253 (376)
T ss_dssp HHHHHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHHHHHHHS---SHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555543 334443221 1112234567877766777778888889999999999998876654
Q ss_pred CCCCCCCCCchHHH
Q 005287 307 PLGNTRVPSMPHLL 320 (704)
Q Consensus 307 ~~~~~~~~plp~l~ 320 (704)
..+...+.|+|++.
T Consensus 254 ~s~~~a~iP~~g~~ 267 (376)
T PF05049_consen 254 KSAAVATIPVPGLS 267 (376)
T ss_dssp HT--BSS-CCCSS-
T ss_pred HHHHhccCCCcccc
Confidence 54555677777765
No 51
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.32 E-value=3.7e-12 Score=140.59 Aligned_cols=129 Identities=24% Similarity=0.275 Sum_probs=91.2
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHH-
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK- 156 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik- 156 (704)
..-+++|+|-|||||||++|.+.-.+ ..+.+++.||+......+...-..+.+|||||+.+....+ ..+.+ +..|.
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vtrad-vevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEd-rN~IE-mqsITA 243 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVTRAD-DEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEED-RNIIE-MQIITA 243 (620)
T ss_pred CcCeEEEecCCCCCcHhhcccccccc-cccCCcccccchhhhhhhhhheeeeeecCCccccCcchhh-hhHHH-HHHHHH
Confidence 34589999999999999999987655 3445666777777766666777789999999999886543 22222 22222
Q ss_pred -HHHhcCCCCEEEEEEeccCccCC--CCcHHHHHHHHHHhcccccccEEEEEEccCCCCCCCC
Q 005287 157 -KFIRRSPPDIVLYFERLDLISMG--FSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPEGS 216 (704)
Q Consensus 157 -~~ik~~~~dvVL~Vi~ld~~t~~--~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~pde~ 216 (704)
.+++ -+||||++++..-.. .....+...|...|. .+++|+|+||+|.+.|+++
T Consensus 244 LAHLr----aaVLYfmDLSe~CGySva~QvkLfhsIKpLFa---NK~~IlvlNK~D~m~~edL 299 (620)
T KOG1490|consen 244 LAHLR----SAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA---NKVTILVLNKIDAMRPEDL 299 (620)
T ss_pred HHHhh----hhheeeeechhhhCCCHHHHHHHHHHhHHHhc---CCceEEEeecccccCcccc
Confidence 2222 589999888743211 234567777777774 5789999999999988764
No 52
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.32 E-value=1.5e-11 Score=145.46 Aligned_cols=122 Identities=14% Similarity=0.193 Sum_probs=92.3
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHH
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 158 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ 158 (704)
..+|+|+|++|||||||+|+|+|...+.++..+++|++.......+.+..+.+|||||+..... .....+......+
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~---~~~~~~~~~~~~~ 351 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVE---GIDSAIASQAQIA 351 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCc---cHHHHHHHHHHHH
Confidence 3589999999999999999999998888888889999988888888999999999999874311 1223333444444
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 159 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 159 ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
+. .+|++|+|++.... ....+..+.+.+... .+|+|+|+||+|+.
T Consensus 352 ~~--~aD~iL~VvDa~~~-~~~~d~~i~~~Lr~~-----~~pvIlV~NK~D~~ 396 (712)
T PRK09518 352 VS--LADAVVFVVDGQVG-LTSTDERIVRMLRRA-----GKPVVLAVNKIDDQ 396 (712)
T ss_pred HH--hCCEEEEEEECCCC-CCHHHHHHHHHHHhc-----CCCEEEEEECcccc
Confidence 44 67999999876432 122455566666543 58999999999975
No 53
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.31 E-value=1.6e-11 Score=112.88 Aligned_cols=118 Identities=22% Similarity=0.237 Sum_probs=79.0
Q ss_pred EEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEc-CeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcC
Q 005287 84 VLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVN-GIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRS 162 (704)
Q Consensus 84 VVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~-G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~ 162 (704)
|+|++|+|||||+|+|++......+...++|........... +..+.++||||+.+..... .........++.
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~----~~~~~~~~~~~~-- 74 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLG----REREELARRVLE-- 74 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccch----hhHHHHHHHHHH--
Confidence 589999999999999999887766666677777666665554 7799999999998764322 111122233333
Q ss_pred CCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCCC
Q 005287 163 PPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 213 (704)
Q Consensus 163 ~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~p 213 (704)
.+|++++|++....... ....+...... ...|+++|+||+|...+
T Consensus 75 ~~d~il~v~~~~~~~~~-~~~~~~~~~~~-----~~~~~ivv~nK~D~~~~ 119 (163)
T cd00880 75 RADLILFVVDADLRADE-EEEKLLELLRE-----RGKPVLLVLNKIDLLPE 119 (163)
T ss_pred hCCEEEEEEeCCCCCCH-HHHHHHHHHHh-----cCCeEEEEEEccccCCh
Confidence 67999999776654321 11111222211 25899999999998743
No 54
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.31 E-value=3.3e-11 Score=113.92 Aligned_cols=114 Identities=18% Similarity=0.145 Sum_probs=72.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCcccc--CCCCccceEEEEEeeEc-CeEEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETD--AFQPATDCIREVKGSVN-GIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs--~~~~tT~~~~~~~~~~~-G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
+.|+++|.+|||||||+|+|.+....... ..+.+|.+.......+. +..+.+|||||.... ...+.
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~-----------~~~~~ 69 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKF-----------IKNML 69 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHH-----------HHHHH
Confidence 36899999999999999999986533222 12344555554455555 789999999997321 12222
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 157 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
.++ ..+|++++|++++.... ......+..+.. .+ .+|+++|+||+|+.
T Consensus 70 ~~~--~~ad~ii~V~d~~~~~~-~~~~~~~~~~~~-~~---~~~~ilv~NK~Dl~ 117 (164)
T cd04171 70 AGA--GGIDLVLLVVAADEGIM-PQTREHLEILEL-LG---IKRGLVVLTKADLV 117 (164)
T ss_pred hhh--hcCCEEEEEEECCCCcc-HhHHHHHHHHHH-hC---CCcEEEEEECcccc
Confidence 233 26799999987753211 122233333222 22 24899999999986
No 55
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.31 E-value=1.4e-11 Score=137.37 Aligned_cols=123 Identities=12% Similarity=0.089 Sum_probs=84.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEc-CeEEEEEECCCCCCcccchhhhhHHHHHHHHHHH
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVN-GIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 159 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~-G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~i 159 (704)
.|+|||.||||||||||+|++... .+++++.+|..+......+. +.+++|+||||+....... ..+...+.+++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~-kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~----~gLg~~fLrhi 234 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKP-KIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEG----VGLGHQFLRHI 234 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCC-ccccCCcceeceEEEEEEEeCCceEEEEECCCCccccccc----chHHHHHHHHH
Confidence 799999999999999999998774 45667788888877766666 7899999999998643221 22333333344
Q ss_pred hcCCCCEEEEEEeccCc-cCCC-Cc-HHHHHHHHHHhcccccccEEEEEEccCC
Q 005287 160 RRSPPDIVLYFERLDLI-SMGF-SD-FPLLKLMTEVFGTAIWFNTILVMTHSSS 210 (704)
Q Consensus 160 k~~~~dvVL~Vi~ld~~-t~~~-~D-~~lLk~L~~~fG~~~~k~vIVVLTK~D~ 210 (704)
. +.+++++|++++.. .... .+ ..+.+.|.........+|.|||+||+|+
T Consensus 235 e--r~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL 286 (424)
T PRK12297 235 E--RTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDL 286 (424)
T ss_pred h--hCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCC
Confidence 3 56999999887543 1111 11 2344444443222235899999999996
No 56
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.30 E-value=1.4e-11 Score=133.29 Aligned_cols=126 Identities=13% Similarity=0.111 Sum_probs=84.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC-eEEEEEECCCCCCcccchhhhhHHHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG-IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 158 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G-~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ 158 (704)
..|+|||.||||||||+|+|.+.. ..++.++.+|..+......+.+ .++.|+||||+.+..... ..+...+.++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~-~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~----~gLg~~flrh 232 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEG----AGLGHRFLKH 232 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCC-ccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCccc----ccHHHHHHHH
Confidence 379999999999999999999875 3466677788887777767766 899999999997653221 1222233344
Q ss_pred HhcCCCCEEEEEEeccCccC--CCCcH-HHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 159 IRRSPPDIVLYFERLDLISM--GFSDF-PLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 159 ik~~~~dvVL~Vi~ld~~t~--~~~D~-~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
+. +++++++|++++.... ...+. .+.+.+...-..-..+|+++|+||+|+..
T Consensus 233 ie--rad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~ 287 (329)
T TIGR02729 233 IE--RTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLD 287 (329)
T ss_pred HH--hhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCC
Confidence 43 5689999987764311 01111 23333333211113589999999999863
No 57
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.30 E-value=2.8e-11 Score=120.58 Aligned_cols=126 Identities=17% Similarity=0.099 Sum_probs=76.1
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCe-EEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI-KVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~-~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
..++|+|+|.+|||||||+|.|++...... ....+|...........+. .+.||||||+.+.... .........+
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~~- 115 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADVYAE-DQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPH--QLVEAFRSTL- 115 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchhccC-CccceeccceeEEEEecCCceEEEeCCCccccCCCH--HHHHHHHHHH-
Confidence 357999999999999999999999764322 2234454444444444444 8999999999654211 1111111111
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcH-HHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 157 KFIRRSPPDIVLYFERLDLISMGFSDF-PLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~t~~~~D~-~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
..+ ..+|++++|++++.... ..+. .+.+.+... +. ...|+++|+||+|+..
T Consensus 116 ~~~--~~~d~ii~v~D~~~~~~-~~~~~~~~~~l~~~-~~-~~~~viiV~NK~Dl~~ 167 (204)
T cd01878 116 EEV--AEADLLLHVVDASDPDY-EEQIETVEKVLKEL-GA-EDIPMILVLNKIDLLD 167 (204)
T ss_pred HHH--hcCCeEEEEEECCCCCh-hhHHHHHHHHHHHc-Cc-CCCCEEEEEEccccCC
Confidence 122 26799999987654321 1222 223333332 21 2479999999999874
No 58
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.29 E-value=2.4e-11 Score=137.46 Aligned_cols=125 Identities=14% Similarity=0.149 Sum_probs=86.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 159 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~i 159 (704)
..|+|||.||||||||+|+|++... .++.++.+|..+........+.+++|+||||+.+..... ..+...+.+++
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akp-kIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g----~gLg~~fLrhi 234 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKP-KIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEG----KGLGLDFLRHI 234 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCc-cccccCcccccceEEEEEECCeEEEEEECCCCccccchh----hHHHHHHHHHH
Confidence 4799999999999999999999764 456778889888888888888999999999998653222 22222333344
Q ss_pred hcCCCCEEEEEEeccCcc--C-CCCcHH-HHHHHHHHhc---------ccccccEEEEEEccCCC
Q 005287 160 RRSPPDIVLYFERLDLIS--M-GFSDFP-LLKLMTEVFG---------TAIWFNTILVMTHSSST 211 (704)
Q Consensus 160 k~~~~dvVL~Vi~ld~~t--~-~~~D~~-lLk~L~~~fG---------~~~~k~vIVVLTK~D~l 211 (704)
. +++++++|+++.... . ...+.. +.+.|..... .-..+|.|||+||+|+.
T Consensus 235 e--radvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~ 297 (500)
T PRK12296 235 E--RCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVP 297 (500)
T ss_pred H--hcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccch
Confidence 3 569999998775321 1 112222 2334433321 12358999999999975
No 59
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.29 E-value=2.8e-11 Score=143.82 Aligned_cols=122 Identities=16% Similarity=0.203 Sum_probs=88.4
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchh--hhhHHHHHHHH
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNV--KRNRKIMLSVK 156 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~--~~n~~il~~Ik 156 (704)
.++|+++|.||||||||+|+|+|... .+++.+++|.+.+.......+.++.+|||||+.+...... ...+.+ .+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i---~~ 78 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQI---AC 78 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHH---HH
Confidence 57899999999999999999999864 6777889999888888888899999999999986532100 111222 23
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 157 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
.++....+|++++|++.+... ....+...+.+. ..|+++|+||+|...
T Consensus 79 ~~l~~~~aD~vI~VvDat~le---r~l~l~~ql~e~-----giPvIvVlNK~Dl~~ 126 (772)
T PRK09554 79 HYILSGDADLLINVVDASNLE---RNLYLTLQLLEL-----GIPCIVALNMLDIAE 126 (772)
T ss_pred HHHhccCCCEEEEEecCCcch---hhHHHHHHHHHc-----CCCEEEEEEchhhhh
Confidence 344445789999997765432 123334444432 589999999999864
No 60
>PRK11058 GTPase HflX; Provisional
Probab=99.29 E-value=2.1e-11 Score=136.23 Aligned_cols=122 Identities=17% Similarity=0.173 Sum_probs=79.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCe-EEEEEECCCCCCcccchhhhhHHHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI-KVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 158 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~-~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ 158 (704)
.+|+|+|.||||||||+|+|++.+.+ +.+.+++|.+.......+.+. ++.++||||+.... . ......+...
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~l-p-----~~lve~f~~t 270 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDVADVGETVLADTVGFIRHL-P-----HDLVAAFKAT 270 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEeCCCCeEEEEecCcccccC-C-----HHHHHHHHHH
Confidence 58999999999999999999998866 555667787776666666554 89999999995421 1 1112222222
Q ss_pred Hh-cCCCCEEEEEEeccCccCCCCcHHH-HHHHHHHhcccccccEEEEEEccCCC
Q 005287 159 IR-RSPPDIVLYFERLDLISMGFSDFPL-LKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 159 ik-~~~~dvVL~Vi~ld~~t~~~~D~~l-Lk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
+. ...+|++++|++.+.... ..+... .+.+... +. ...|+|+|+||+|+.
T Consensus 271 l~~~~~ADlIL~VvDaS~~~~-~e~l~~v~~iL~el-~~-~~~pvIiV~NKiDL~ 322 (426)
T PRK11058 271 LQETRQATLLLHVVDAADVRV-QENIEAVNTVLEEI-DA-HEIPTLLVMNKIDML 322 (426)
T ss_pred HHHhhcCCEEEEEEeCCCccH-HHHHHHHHHHHHHh-cc-CCCCEEEEEEcccCC
Confidence 22 137899999987654321 112221 2233332 21 247999999999986
No 61
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.27 E-value=6e-11 Score=111.44 Aligned_cols=121 Identities=20% Similarity=0.226 Sum_probs=76.0
Q ss_pred EEEEeCCCCcHHHHHHHHhCC-CCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHh
Q 005287 82 ILVLGKTGVGKSATINSIFDQ-TKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 160 (704)
Q Consensus 82 IlVVGkTGvGKSTLINsLlG~-~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik 160 (704)
|+++|.+|+|||||+|+|++. .....+...++|.....+.. . ..++++||||+....... .........+..++.
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~~~D~~g~~~~~~~~-~~~~~~~~~~~~~~~ 77 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNV--N-DKFRLVDLPGYGYAKVSK-EVKEKWGKLIEEYLE 77 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEc--c-CeEEEecCCCccccccCH-HHHHHHHHHHHHHHH
Confidence 799999999999999999953 33334444455555444332 2 389999999998753311 112223333444544
Q ss_pred cC-CCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 161 RS-PPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 161 ~~-~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
.. ..++++++++.+.... ..+..+++.+... ..|+++|+||+|...
T Consensus 78 ~~~~~~~~~~v~d~~~~~~-~~~~~~~~~l~~~-----~~~vi~v~nK~D~~~ 124 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPT-EIDLEMLDWLEEL-----GIPFLVVLTKADKLK 124 (170)
T ss_pred hChhhhEEEEEEEcCcCCC-HhHHHHHHHHHHc-----CCCEEEEEEchhcCC
Confidence 32 4677888866653321 2344556666543 378999999999874
No 62
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.24 E-value=1.1e-10 Score=110.60 Aligned_cols=116 Identities=14% Similarity=0.108 Sum_probs=72.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
.+|+++|++|||||||+|++++...... ..+..|.+........++ .++.++||||.... . ..+..
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~--------~---~~~~~ 68 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQ-YQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERF--------R---SLIPS 68 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcc-CCCceeeeEEEEEEEECCEEEEEEEEECCCcHHH--------H---HHHHH
Confidence 3799999999999999999999875442 222334444444444555 46899999995321 1 12233
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
+++ .+|++++|.+++....-......+..+....+. ..|+++|.||+|+.
T Consensus 69 ~~~--~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilv~nK~D~~ 118 (161)
T cd01861 69 YIR--DSSVAVVVYDITNRQSFDNTDKWIDDVRDERGN--DVIIVLVGNKTDLS 118 (161)
T ss_pred Hhc--cCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCEEEEEEEChhcc
Confidence 343 679999998776432100112333333333221 47999999999986
No 63
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.23 E-value=5.7e-11 Score=136.33 Aligned_cols=125 Identities=17% Similarity=0.301 Sum_probs=95.6
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHH
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 158 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ 158 (704)
..+|+++|.|||||||++|+|+|.+ ..++..+++|.+.++......|.++.+||.||.++-..- ..++.+ .+++
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~-q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~--S~DE~V---ar~~ 76 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGAN-QKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAY--SEDEKV---ARDF 76 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccC-ceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCC--CchHHH---HHHH
Confidence 4579999999999999999999987 678889999999999999999999999999999876432 122333 4567
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCCCCCCC
Q 005287 159 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPEGSS 217 (704)
Q Consensus 159 ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~pde~~ 217 (704)
+.+.++|+++-|++.....+ +-.-+++ +.+. ..|+|+++|++|.....+..
T Consensus 77 ll~~~~D~ivnVvDAtnLeR--nLyltlQ-LlE~-----g~p~ilaLNm~D~A~~~Gi~ 127 (653)
T COG0370 77 LLEGKPDLIVNVVDATNLER--NLYLTLQ-LLEL-----GIPMILALNMIDEAKKRGIR 127 (653)
T ss_pred HhcCCCCEEEEEcccchHHH--HHHHHHH-HHHc-----CCCeEEEeccHhhHHhcCCc
Confidence 77779999999966554432 2222232 3332 58999999999998766543
No 64
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.21 E-value=1.5e-10 Score=110.32 Aligned_cols=111 Identities=20% Similarity=0.186 Sum_probs=72.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEc---CeEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVN---GIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~---G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
.|+|+|.+|+|||||+|+|++...... ...++|.+......... +..+.+|||||.... .... ..
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~--------~~~~---~~ 69 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAG-EAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAF--------TNMR---AR 69 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccc-cCCCeEEeeccEEEecccCCcceEEEEeCCCcHHH--------HHHH---HH
Confidence 589999999999999999998764432 23345555544444443 789999999997432 1111 12
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
++ ..+|++++|++.+.... ......+..+.. ...|+++|+||+|+.
T Consensus 70 ~~--~~~d~il~v~d~~~~~~-~~~~~~~~~~~~-----~~~p~ivv~NK~Dl~ 115 (168)
T cd01887 70 GA--SLTDIAILVVAADDGVM-PQTIEAIKLAKA-----ANVPFIVALNKIDKP 115 (168)
T ss_pred HH--hhcCEEEEEEECCCCcc-HHHHHHHHHHHH-----cCCCEEEEEEceecc
Confidence 22 26799999987754221 123334444433 247999999999976
No 65
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.21 E-value=1.2e-10 Score=112.58 Aligned_cols=113 Identities=15% Similarity=0.041 Sum_probs=74.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCccccC---------------CCCccceEEEEEeeEcCeEEEEEECCCCCCcccchh
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTETDA---------------FQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNV 145 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~vs~---------------~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~ 145 (704)
+|+|+|.+|+|||||+|+|++........ ..+.|...........+..+.||||||..+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~----- 75 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDF----- 75 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHH-----
Confidence 58999999999999999999876544321 1223444444445566889999999998532
Q ss_pred hhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 146 KRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 146 ~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
. .....+++ .+|++++|++...... ..+...+..+.. ...|+++|+||+|+..
T Consensus 76 ---~---~~~~~~~~--~~d~~i~v~d~~~~~~-~~~~~~~~~~~~-----~~~~i~iv~nK~D~~~ 128 (189)
T cd00881 76 ---S---SEVIRGLS--VSDGAILVVDANEGVQ-PQTREHLRIARE-----GGLPIIVAINKIDRVG 128 (189)
T ss_pred ---H---HHHHHHHH--hcCEEEEEEECCCCCc-HHHHHHHHHHHH-----CCCCeEEEEECCCCcc
Confidence 1 11222332 5799999977653221 233344444433 2589999999999885
No 66
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.21 E-value=1.3e-10 Score=110.14 Aligned_cols=117 Identities=21% Similarity=0.192 Sum_probs=71.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCc-cceEEEEEeeE--cCeEEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPA-TDCIREVKGSV--NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~t-T~~~~~~~~~~--~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
++|+++|.+|||||||+|++++...... ..++ +.+........ ....+.++||||.... ..+. .
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~~---~ 67 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSK--YLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEY--------LEVR---N 67 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC--CCCccceeEEEEEEEECCeEEEEEEEECCccHHH--------HHHH---H
Confidence 5899999999999999999998764332 1121 11221222222 3457889999998422 1111 2
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc---cccccEEEEEEccCCC
Q 005287 157 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT---AIWFNTILVMTHSSST 211 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~---~~~k~vIVVLTK~D~l 211 (704)
.++ ..+|++++|.+++....-......+..+.+.... ....|+++|.||+|+.
T Consensus 68 ~~~--~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 123 (168)
T cd04119 68 EFY--KDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT 123 (168)
T ss_pred HHh--ccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcc
Confidence 233 2679999998766432101122344445444332 1357999999999986
No 67
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.21 E-value=1.2e-10 Score=108.28 Aligned_cols=117 Identities=17% Similarity=0.097 Sum_probs=70.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCcccc-CCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETD-AFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 158 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs-~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ 158 (704)
++|+++|.+|||||||+|.+++....... ...+.+..............+.++||||.... .. ....+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------~~---~~~~~ 69 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERF--------RS---ITPSY 69 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHH--------HH---HHHHH
Confidence 58999999999999999999987755441 11111122222222224468899999998321 11 22233
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 159 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 159 ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
++ .+|++++|++++....-.....++..+..... ...|+++|+||+|..
T Consensus 70 ~~--~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~ 118 (159)
T cd00154 70 YR--GAHGAILVYDITNRESFENLDKWLKELKEYAP--ENIPIILVGNKIDLE 118 (159)
T ss_pred hc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEEccccc
Confidence 43 57999999877643210011223333333311 247999999999986
No 68
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.19 E-value=2.3e-10 Score=118.07 Aligned_cols=87 Identities=21% Similarity=0.305 Sum_probs=63.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHh
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 160 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik 160 (704)
+|+++|.+|+|||||+|+|+|.. ..++.++.+|.++......+.+.++.++||||+.+..... ......+..+++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~-~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~----~~~~~~~l~~~~ 76 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK-SEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADG----KGRGRQVIAVAR 76 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-ccccCCCCccccceEEEEEECCeEEEEEECCCcccccccc----hhHHHHHHHhhc
Confidence 68999999999999999999976 3455677788888777777899999999999997643211 122222223332
Q ss_pred cCCCCEEEEEEecc
Q 005287 161 RSPPDIVLYFERLD 174 (704)
Q Consensus 161 ~~~~dvVL~Vi~ld 174 (704)
.+|++++|++..
T Consensus 77 --~ad~il~V~D~t 88 (233)
T cd01896 77 --TADLILMVLDAT 88 (233)
T ss_pred --cCCEEEEEecCC
Confidence 678898887654
No 69
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.19 E-value=4.1e-10 Score=103.60 Aligned_cols=118 Identities=19% Similarity=0.139 Sum_probs=71.9
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
.++|+++|.+|+|||||+|+|++.. ......+.+|.+........++ ..+.++||||..+. ......
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~--------~~~~~~-- 69 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDY--------RAIRRL-- 69 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccc--------hHHHHH--
Confidence 3799999999999999999999988 5555555566666665556677 78899999995432 111111
Q ss_pred HHHhcCCCCEEEEEEeccCc-c-CCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 157 KFIRRSPPDIVLYFERLDLI-S-MGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~-t-~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
+.+ ..+.++++.++... . ...........+...... ..|+++|+||+|...
T Consensus 70 -~~~--~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~ 122 (161)
T TIGR00231 70 -YYR--AVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES--NVPIILVGNKIDLRD 122 (161)
T ss_pred -HHh--hhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc--CCcEEEEEEcccCCc
Confidence 111 23444444433322 1 100111233333333211 579999999999873
No 70
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.18 E-value=9.4e-11 Score=118.35 Aligned_cols=113 Identities=16% Similarity=0.104 Sum_probs=74.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCccccC------------------------------CCCccceEEEEEeeEcCeEEE
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTETDA------------------------------FQPATDCIREVKGSVNGIKVT 130 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~vs~------------------------------~~~tT~~~~~~~~~~~G~~v~ 130 (704)
||+|+|++|+|||||+|+|+....++++. ..+.|.+.......+.+.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 58999999999999999998765443310 145677777777778899999
Q ss_pred EEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCC
Q 005287 131 FIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSS 210 (704)
Q Consensus 131 LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~ 210 (704)
|+||||..+. ...+...++ .+|++++|++...... ..+......+. .++ .+++|+|+||+|.
T Consensus 81 liDTpG~~~~-----------~~~~~~~~~--~ad~~llVvD~~~~~~-~~~~~~~~~~~-~~~---~~~iIvviNK~D~ 142 (208)
T cd04166 81 IADTPGHEQY-----------TRNMVTGAS--TADLAILLVDARKGVL-EQTRRHSYILS-LLG---IRHVVVAVNKMDL 142 (208)
T ss_pred EEECCcHHHH-----------HHHHHHhhh--hCCEEEEEEECCCCcc-HhHHHHHHHHH-HcC---CCcEEEEEEchhc
Confidence 9999997321 111222332 6799999987653211 12333333332 222 2457889999997
Q ss_pred C
Q 005287 211 T 211 (704)
Q Consensus 211 l 211 (704)
.
T Consensus 143 ~ 143 (208)
T cd04166 143 V 143 (208)
T ss_pred c
Confidence 6
No 71
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.18 E-value=1.4e-10 Score=110.71 Aligned_cols=115 Identities=12% Similarity=0.089 Sum_probs=71.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCcc---ccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTE---TDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~---vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
+|+|+|.+|+|||||+|.|++..... ......+|.........+++..+.++||||.... ... ...
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~---~~~ 69 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESL--------RSL---WDK 69 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhh--------HHH---HHH
Confidence 58999999999999999998753221 1111123444334445567899999999998532 111 122
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc--cccccEEEEEEccCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSST 211 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~--~~~k~vIVVLTK~D~l 211 (704)
++ ..+|++++|++..... ........+...+.. ....|+++|+||+|..
T Consensus 70 ~~--~~~~~~v~vvd~~~~~---~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~ 120 (167)
T cd04160 70 YY--AECHAIIYVIDSTDRE---RFEESKSALEKVLRNEALEGVPLLILANKQDLP 120 (167)
T ss_pred Hh--CCCCEEEEEEECchHH---HHHHHHHHHHHHHhChhhcCCCEEEEEEccccc
Confidence 33 2679999997764322 111233333333221 1247999999999975
No 72
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.18 E-value=2.8e-10 Score=109.83 Aligned_cols=118 Identities=15% Similarity=0.116 Sum_probs=70.7
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
-++|+|+|.+|||||||+|++++......... ..+.+.........+ ..+.|+||||... ......
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~~~ 71 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMITIDGKQIKLQIWDTAGQES-----------FRSITR 71 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCC-ccceeEEEEEEEECCEEEEEEEEECCCcHH-----------HHHHHH
Confidence 48999999999999999999998765443221 112222222223333 5789999999521 111123
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 157 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
.+++ .+|++++|.++.....-..-..++..+.... ....|+++|.||.|+..
T Consensus 72 ~~~~--~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~pvivv~nK~Dl~~ 123 (168)
T cd01866 72 SYYR--GAAGALLVYDITRRETFNHLTSWLEDARQHS--NSNMTIMLIGNKCDLES 123 (168)
T ss_pred HHhc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCcEEEEEECccccc
Confidence 3443 6799999987763221001112233333321 12478999999999873
No 73
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.17 E-value=3.2e-10 Score=107.56 Aligned_cols=118 Identities=17% Similarity=0.159 Sum_probs=72.0
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
.++|+++|.+|||||||+|++++... +....+++.........+.+ ..+.++||||..+. ..+ ..
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--------~~~---~~ 68 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYF--VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEF--------SAM---RE 68 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceEEEEEEECCEEEEEEEEECCCCcch--------hHH---HH
Confidence 47999999999999999999998653 23344554433333334555 46788999997432 111 12
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 157 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
.+++ ..|++++|.+++....-..-......+..... ....|+++|.||+|+..
T Consensus 69 ~~~~--~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~Dl~~ 121 (164)
T cd04145 69 QYMR--TGEGFLLVFSVTDRGSFEEVDKFHTQILRVKD-RDEFPMILVGNKADLEH 121 (164)
T ss_pred HHHh--hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCCEEEEeeCccccc
Confidence 3333 56999999877543210011122233333211 12469999999999863
No 74
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.17 E-value=2.8e-10 Score=108.10 Aligned_cols=118 Identities=15% Similarity=0.106 Sum_probs=70.8
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCcccc-CCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETD-AFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs-~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
.++|+|+|++|||||||+|++++.+..... ...+.+...........+..+.++||||.... ... ...
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~--------~~~---~~~ 69 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERY--------RSL---APM 69 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHH--------HHH---HHH
Confidence 379999999999999999999998754421 11111111223333333467889999995211 111 112
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
+++ .+|++++|++++....-......+..+..... ...|+++|.||.|+.
T Consensus 70 ~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~ 119 (163)
T cd01860 70 YYR--GAAAAIVVYDITSEESFEKAKSWVKELQRNAS--PNIIIALVGNKADLE 119 (163)
T ss_pred Hhc--cCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECcccc
Confidence 332 57999999877643211122233444444322 347899999999976
No 75
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.17 E-value=4.6e-10 Score=112.98 Aligned_cols=114 Identities=12% Similarity=0.049 Sum_probs=77.1
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCC------CCcccc---------CCCCccceEEEEEeeEcCeEEEEEECCCCCCcccc
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQ------TKTETD---------AFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVR 143 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~------~~a~vs---------~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~ 143 (704)
.++|+++|.+|+|||||+|+|++. ...... ...+.|.+.....++.++.+++|+||||+.+
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~---- 77 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD---- 77 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHH----
Confidence 479999999999999999999864 111000 1245566666666677889999999999842
Q ss_pred hhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccccccc-EEEEEEccCCC
Q 005287 144 NVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFN-TILVMTHSSST 211 (704)
Q Consensus 144 ~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~-vIVVLTK~D~l 211 (704)
+...+...+. .+|++++|++....- ...+..++..+.+. ..| +|+++||+|+.
T Consensus 78 -------~~~~~~~~~~--~~D~~ilVvda~~g~-~~~~~~~~~~~~~~-----~~~~iIvviNK~D~~ 131 (195)
T cd01884 78 -------YIKNMITGAA--QMDGAILVVSATDGP-MPQTREHLLLARQV-----GVPYIVVFLNKADMV 131 (195)
T ss_pred -------HHHHHHHHhh--hCCEEEEEEECCCCC-cHHHHHHHHHHHHc-----CCCcEEEEEeCCCCC
Confidence 2223333343 679999998765421 22455566655543 344 78999999986
No 76
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.16 E-value=3.3e-10 Score=108.88 Aligned_cols=118 Identities=20% Similarity=0.189 Sum_probs=71.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccce--EEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDC--IREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~--~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
++|+++|.+|||||||+|++++...... ..+++.. ............+.++||||..... .+.. .
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~--~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~~~---~ 68 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRES--YIPTIEDTYRQVISCSKNICTLQITDTTGSHQFP--------AMQR---L 68 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCC--cCCcchheEEEEEEECCEEEEEEEEECCCCCcch--------HHHH---H
Confidence 7899999999999999999998663221 1122211 1222222344678899999985431 1111 1
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccc-ccccEEEEEEccCCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA-IWFNTILVMTHSSSTL 212 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~-~~k~vIVVLTK~D~l~ 212 (704)
++ ..+|++++|.+++....-.....+++.+.+..+.. ...|+++|.||+|+..
T Consensus 69 ~~--~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 122 (165)
T cd04140 69 SI--SKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH 122 (165)
T ss_pred Hh--hcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc
Confidence 22 26789999987764321111233445555544332 3579999999999863
No 77
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.16 E-value=9e-10 Score=109.36 Aligned_cols=113 Identities=18% Similarity=0.190 Sum_probs=71.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCC-cccc--------------CCCCccceEEEEEeeEcCeEEEEEECCCCCCcccch
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTK-TETD--------------AFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRN 144 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~-a~vs--------------~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~ 144 (704)
-+|+++|.+|||||||+|+|++... +... ...+.|...........+..+.++||||..+.
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~---- 78 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADF---- 78 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHH----
Confidence 3799999999999999999996321 1110 01234444555556677889999999998532
Q ss_pred hhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 145 VKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 145 ~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
......+++ .+|++++|++...... .....++..+.. ...|+++|+||+|+.
T Consensus 79 -------~~~~~~~~~--~~d~~ilV~d~~~~~~-~~~~~~~~~~~~-----~~~p~iiv~NK~Dl~ 130 (194)
T cd01891 79 -------GGEVERVLS--MVDGVLLLVDASEGPM-PQTRFVLKKALE-----LGLKPIVVINKIDRP 130 (194)
T ss_pred -------HHHHHHHHH--hcCEEEEEEECCCCcc-HHHHHHHHHHHH-----cCCCEEEEEECCCCC
Confidence 112233443 6799999987654211 112223333222 247899999999986
No 78
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.15 E-value=5.8e-10 Score=105.63 Aligned_cols=116 Identities=22% Similarity=0.198 Sum_probs=70.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
++|+++|++|||||||+|++++...... ..+..+.+.........+ ..+.++||||.... . .....
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~--------~---~~~~~ 68 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQ-YKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERF--------R---SITSS 68 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCceeeEEEEEEEEECCEEEEEEEEECCChHHH--------H---HHHHH
Confidence 5899999999999999999998764222 112222233333444555 47889999995321 1 12223
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCc-HHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSD-FPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D-~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
+++ .+|++++|+++..... ..+ ..++..+..... ...|+++|.||+|+..
T Consensus 69 ~~~--~~d~~ilv~d~~~~~s-~~~~~~~l~~~~~~~~--~~~pivvv~nK~D~~~ 119 (164)
T smart00175 69 YYR--GAVGALLVYDITNRES-FENLKNWLKELREYAD--PNVVIMLVGNKSDLED 119 (164)
T ss_pred HhC--CCCEEEEEEECCCHHH-HHHHHHHHHHHHHhCC--CCCeEEEEEEchhccc
Confidence 332 6799999987754321 111 112233322211 2579999999999763
No 79
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.14 E-value=4.3e-10 Score=106.76 Aligned_cols=118 Identities=19% Similarity=0.144 Sum_probs=69.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccc-cCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTET-DAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 158 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~v-s~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ 158 (704)
++|+++|++|||||||+|+|++...... ....+.+.....+........+.++||||.... .. ....+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------~~---~~~~~ 69 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERF--------RT---LTSSY 69 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhh--------hh---hhHHH
Confidence 5899999999999999999998764332 111112222222222222357899999996322 11 11223
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 159 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 159 ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
++ .+|++++|.+++....-......+..+.+. ......|+++|.||+|+.
T Consensus 70 ~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 70 YR--GAQGVILVYDVTRRDTFTNLETWLNELETY-STNNDIVKMLVGNKIDKE 119 (161)
T ss_pred hC--CCCEEEEEEECCCHHHHHhHHHHHHHHHHh-CCCCCCcEEEEEECCccc
Confidence 33 579999998765432100111233333333 223357899999999987
No 80
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.13 E-value=5.9e-10 Score=106.77 Aligned_cols=118 Identities=15% Similarity=0.113 Sum_probs=71.0
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
.++|+|+|.+|+|||||+|++.+........ +..+.+.......+++ ..+.|+||||.... .. ...
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~--------~~---~~~ 70 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQG-NTIGVDFTMKTLEIEGKRVKLQIWDTAGQERF--------RT---ITQ 70 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCC-CccceEEEEEEEEECCEEEEEEEEECCChHHH--------HH---HHH
Confidence 4899999999999999999998754332211 1111223223334455 47899999995211 11 122
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 157 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
.+++ .+|++++|++++....-......+..+.... ....|+++|.||+|+..
T Consensus 71 ~~~~--~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~Dl~~ 122 (165)
T cd01864 71 SYYR--SANGAIIAYDITRRSSFESVPHWIEEVEKYG--ASNVVLLLIGNKCDLEE 122 (165)
T ss_pred HHhc--cCCEEEEEEECcCHHHHHhHHHHHHHHHHhC--CCCCcEEEEEECccccc
Confidence 3332 5799999987765321011223444444321 22468999999999863
No 81
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.13 E-value=7.9e-10 Score=109.12 Aligned_cols=114 Identities=13% Similarity=0.157 Sum_probs=73.5
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
..++|+++|.+|||||||+|.+.+.....+ .+|...........+.++.++||||.... ...+ ..
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~D~~G~~~~--------~~~~---~~ 80 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQH----QPTQHPTSEELAIGNIKFTTFDLGGHQQA--------RRLW---KD 80 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCccc----CCccccceEEEEECCEEEEEEECCCCHHH--------HHHH---HH
Confidence 458999999999999999999998764432 12333333444567889999999998432 1122 23
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc--cccccEEEEEEccCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSST 211 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~--~~~k~vIVVLTK~D~l 211 (704)
++. .+|+++||+++..... -......+.+.+.. ....|+++|+||.|+.
T Consensus 81 ~~~--~ad~ii~vvD~~~~~~---~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~ 131 (184)
T smart00178 81 YFP--EVNGIVYLVDAYDKER---FAESKRELDALLSDEELATVPFLILGNKIDAP 131 (184)
T ss_pred HhC--CCCEEEEEEECCcHHH---HHHHHHHHHHHHcChhhcCCCEEEEEeCcccc
Confidence 333 6799999977643221 11222233333321 1247999999999974
No 82
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.13 E-value=5.1e-10 Score=112.43 Aligned_cols=125 Identities=15% Similarity=0.124 Sum_probs=73.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccc-eEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATD-CIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~-~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
++|+|+|.+|||||||+|.+++.+.... ..+++. +.......++| ..+.|+||||....... ...+......
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~--~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~---~~~e~~~~~~ 75 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEE--YIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGT---AGQEWMDPRF 75 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcc--cCCccccccceeEEEECCEEEEEEEEeCCCcccCCcc---chhHHHHHHH
Confidence 4899999999999999999998764332 334443 33323344566 46789999998643211 1112221112
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhc-ccccccEEEEEEccCCC
Q 005287 157 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFG-TAIWFNTILVMTHSSST 211 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG-~~~~k~vIVVLTK~D~l 211 (704)
.++ ..+|++++|.+++....-.....+.+.+..... .....|+++|.||+|+.
T Consensus 76 ~~~--~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~ 129 (198)
T cd04142 76 RGL--RNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQ 129 (198)
T ss_pred hhh--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccc
Confidence 223 367999999877543210011122333333321 12347999999999986
No 83
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.12 E-value=5.1e-10 Score=110.95 Aligned_cols=113 Identities=16% Similarity=0.168 Sum_probs=69.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCC------CccccCCCCccceEEEEEeeEc--------------CeEEEEEECCCCCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQT------KTETDAFQPATDCIREVKGSVN--------------GIKVTFIDTPGFLP 139 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~------~a~vs~~~~tT~~~~~~~~~~~--------------G~~v~LIDTPGl~d 139 (704)
++|+++|.+|+|||||+|+|++.. .......+++|.+.......+. +..+.+|||||...
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 589999999999999999999742 1111222345655544444333 67999999999831
Q ss_pred cccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 140 SCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 140 ~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
+...+.... ..+|++++|++...... ..+...+.. .... ..|+++|+||+|+.
T Consensus 81 -----------~~~~~~~~~--~~~d~vi~VvD~~~~~~-~~~~~~~~~-~~~~----~~~~iiv~NK~Dl~ 133 (192)
T cd01889 81 -----------LIRTIIGGA--QIIDLMLLVVDATKGIQ-TQTAECLVI-GEIL----CKKLIVVLNKIDLI 133 (192)
T ss_pred -----------HHHHHHHHH--hhCCEEEEEEECCCCcc-HHHHHHHHH-HHHc----CCCEEEEEECcccC
Confidence 122222222 25799999977653211 122222222 2222 46999999999986
No 84
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.12 E-value=5e-10 Score=106.52 Aligned_cols=117 Identities=17% Similarity=0.136 Sum_probs=69.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
++|+|+|.+|||||||+|+|++........ +..+.+........++ ..+.++||||.... .. ....
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~--------~~---~~~~ 68 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQ-HTIGVEFGSKIIRVGGKRVKLQIWDTAGQERF--------RS---VTRS 68 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCC-CceeeeEEEEEEEECCEEEEEEEEECcchHHH--------HH---hHHH
Confidence 589999999999999999999876433211 1112222222233334 46789999997322 11 1223
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
+++ .+|++++|++++....-..-...+..+.... ....|+++|.||+|+..
T Consensus 69 ~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~iivv~nK~D~~~ 119 (161)
T cd04113 69 YYR--GAAGALLVYDITNRTSFEALPTWLSDARALA--SPNIVVILVGNKSDLAD 119 (161)
T ss_pred Hhc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEEchhcch
Confidence 333 6799999987765321111122333333332 22478999999999864
No 85
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.12 E-value=1.1e-09 Score=106.27 Aligned_cols=115 Identities=14% Similarity=0.179 Sum_probs=72.7
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
...++|+++|.+|||||||+|+|++...... .+ |..........++..+.++||||.... ... ..
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~---~~-t~g~~~~~~~~~~~~l~l~D~~G~~~~--------~~~---~~ 76 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDIDTI---SP-TLGFQIKTLEYEGYKLNIWDVGGQKTL--------RPY---WR 76 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCCc---CC-ccccceEEEEECCEEEEEEECCCCHHH--------HHH---HH
Confidence 3568999999999999999999998754322 22 222222333456889999999997421 111 22
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc--cccccEEEEEEccCCC
Q 005287 157 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSST 211 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~--~~~k~vIVVLTK~D~l 211 (704)
.+++ .+|++++|++.+.... .......+...+.. ....|+++|+||+|+.
T Consensus 77 ~~~~--~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 128 (173)
T cd04154 77 NYFE--STDALIWVVDSSDRLR---LDDCKRELKELLQEERLAGATLLILANKQDLP 128 (173)
T ss_pred HHhC--CCCEEEEEEECCCHHH---HHHHHHHHHHHHhChhhcCCCEEEEEECcccc
Confidence 3343 6799999977654321 11222333333221 1357999999999986
No 86
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.12 E-value=9.2e-10 Score=105.12 Aligned_cols=118 Identities=19% Similarity=0.118 Sum_probs=70.3
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
-++|+++|.+|||||||+|++++....... .+..+.+.........+ ..+.++||||.... ... ..
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------~~~---~~ 70 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDS-KSTIGVEFATRSIQIDGKTIKAQIWDTAGQERY--------RAI---TS 70 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCccceEEEEEEEEECCEEEEEEEEeCCChHHH--------HHH---HH
Confidence 379999999999999999999987644332 22223333333334445 46889999996321 111 12
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 157 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
.+++ .++++++|.++.....-..-...+..+.+.. ....|+++|.||+|+..
T Consensus 71 ~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~pi~vv~nK~Dl~~ 122 (165)
T cd01868 71 AYYR--GAVGALLVYDITKKQTFENVERWLKELRDHA--DSNIVIMLVGNKSDLRH 122 (165)
T ss_pred HHHC--CCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEECccccc
Confidence 2333 5688999977653221001112233333321 11379999999999763
No 87
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.11 E-value=1.8e-10 Score=110.83 Aligned_cols=112 Identities=22% Similarity=0.313 Sum_probs=68.4
Q ss_pred EEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEee--------------------------------------
Q 005287 82 ILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGS-------------------------------------- 123 (704)
Q Consensus 82 IlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~-------------------------------------- 123 (704)
|+|+|..++|||||||+|+|.+...++. .++|..+..+...
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~-~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGV-GPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSI 79 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSS-SSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccc-cccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhcccccc
Confidence 7899999999999999999998766543 3555433222100
Q ss_pred ------------------EcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHH
Q 005287 124 ------------------VNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPL 185 (704)
Q Consensus 124 ------------------~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~l 185 (704)
.....+.||||||+.+..... . ..+.+++ ...|++|||.+...... ..+...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~----~---~~~~~~~--~~~d~vi~V~~~~~~~~-~~~~~~ 149 (168)
T PF00350_consen 80 EGKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEH----T---EITEEYL--PKADVVIFVVDANQDLT-ESDMEF 149 (168)
T ss_dssp HTSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTT----S---HHHHHHH--STTEEEEEEEETTSTGG-GHHHHH
T ss_pred cccccccccceeEEeeccccccceEEEeCCccccchhhh----H---HHHHHhh--ccCCEEEEEeccCcccc-hHHHHH
Confidence 011358999999997743221 2 3344556 36799999987765321 123333
Q ss_pred HHHHHHHhcccccccEEEEEEcc
Q 005287 186 LKLMTEVFGTAIWFNTILVMTHS 208 (704)
Q Consensus 186 Lk~L~~~fG~~~~k~vIVVLTK~ 208 (704)
+....+. ....+|+|+||+
T Consensus 150 l~~~~~~----~~~~~i~V~nk~ 168 (168)
T PF00350_consen 150 LKQMLDP----DKSRTIFVLNKA 168 (168)
T ss_dssp HHHHHTT----TCSSEEEEEE-G
T ss_pred HHHHhcC----CCCeEEEEEcCC
Confidence 3333222 235599999985
No 88
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.11 E-value=6.2e-10 Score=104.82 Aligned_cols=116 Identities=17% Similarity=0.247 Sum_probs=70.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCe--EEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~--~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
++|+++|.+|||||||+|++++..... ...+++.........+++. .+.++||||.... ..+. ..
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--------~~l~---~~ 68 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVD--EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY--------SAMR---DQ 68 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcC--CcCCcchheEEEEEEECCEEEEEEEEECCCCcch--------HHHH---HH
Confidence 689999999999999999999875332 2334444333333344553 4678999997432 1121 22
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcH-HHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSDF-PLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D~-~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
+++ ..|++++|.+++.... ..+. .....+.+.. .....|+++|.||+|+..
T Consensus 69 ~~~--~~~~~i~v~~~~~~~s-~~~~~~~~~~i~~~~-~~~~~piivv~nK~Dl~~ 120 (162)
T cd04138 69 YMR--TGEGFLCVFAINSRKS-FEDIHTYREQIKRVK-DSDDVPMVLVGNKCDLAA 120 (162)
T ss_pred HHh--cCCEEEEEEECCCHHH-HHHHHHHHHHHHHhc-CCCCCCEEEEEECccccc
Confidence 443 5688888877664321 1111 1223333321 123579999999999863
No 89
>PLN03118 Rab family protein; Provisional
Probab=99.11 E-value=6.4e-10 Score=111.98 Aligned_cols=118 Identities=21% Similarity=0.311 Sum_probs=70.3
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCcc-ceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPAT-DCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT-~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
..++|+|+|.+|||||||+|+|++....... +++ .+.......+++ ..+.|+||||.... ...
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~---~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~--------~~~--- 78 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVEDLA---PTIGVDFKIKQLTVGGKRLKLTIWDTAGQERF--------RTL--- 78 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCcC---CCceeEEEEEEEEECCEEEEEEEEECCCchhh--------HHH---
Confidence 4689999999999999999999987643222 222 222222233343 57899999997432 111
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcH-HHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 155 VKKFIRRSPPDIVLYFERLDLISMGFSDF-PLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 155 Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~-~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
...+++ .+|++++|.+++.... ..+. .....+...+......++++|.||+|+..
T Consensus 79 ~~~~~~--~~d~~vlv~D~~~~~s-f~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~ 134 (211)
T PLN03118 79 TSSYYR--NAQGIILVYDVTRRET-FTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRES 134 (211)
T ss_pred HHHHHh--cCCEEEEEEECCCHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 123333 6799999987654321 1111 11111222222233468899999999863
No 90
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.11 E-value=1.2e-09 Score=104.54 Aligned_cols=118 Identities=20% Similarity=0.170 Sum_probs=69.9
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
.++|+++|.+|||||||+|++++...... ..+..+.+.........+ ..+.++||||.... .. ...
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--------~~---~~~ 69 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTES-YISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF--------RT---ITS 69 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCccceeEEEEEEEECCEEEEEEEEECCCcHhH--------HH---HHH
Confidence 37999999999999999999998654322 112222233333334444 46889999996321 11 122
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 157 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
.+++ .+|++++|.+++....-..-...+..+.... ....|+++|.||+|+..
T Consensus 70 ~~~~--~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~--~~~~~~iiv~nK~Dl~~ 121 (166)
T cd01869 70 SYYR--GAHGIIIVYDVTDQESFNNVKQWLQEIDRYA--SENVNKLLVGNKCDLTD 121 (166)
T ss_pred HHhC--cCCEEEEEEECcCHHHHHhHHHHHHHHHHhC--CCCCcEEEEEEChhccc
Confidence 3332 6799999987654321001112233333221 12479999999999763
No 91
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.10 E-value=6.9e-10 Score=105.20 Aligned_cols=117 Identities=19% Similarity=0.155 Sum_probs=71.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
++|+++|.+|||||||+|++++..... ...+++.+........++ ..+.|+||||..... .+. ..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~~---~~ 68 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVE--KYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFT--------AMR---DL 68 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc--ccCCchhhhEEEEEEECCEEEEEEEEECCCccccc--------hHH---HH
Confidence 689999999999999999999765332 234444433333344455 456789999975331 111 12
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
+++ .+|++++|.+++....-......+..+.+... ....|+++|.||+|+..
T Consensus 69 ~~~--~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 120 (163)
T cd04136 69 YIK--NGQGFVLVYSITSQSSFNDLQDLREQILRVKD-TENVPMVLVGNKCDLED 120 (163)
T ss_pred Hhh--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence 232 57999999877543210111223334433322 23579999999999763
No 92
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.10 E-value=8e-10 Score=103.84 Aligned_cols=116 Identities=19% Similarity=0.146 Sum_probs=73.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHHHHH
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 158 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ 158 (704)
+|+++|++|||||||+|++++.. ......+++.+.........+ ..+.++||||.... ... ...+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------~~~---~~~~ 67 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEF--------SAM---RDLY 67 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHH--------HHH---HHHH
Confidence 58999999999999999999876 233445555555444455553 57889999997432 111 1223
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 159 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 159 ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
++ ..|++++|.+++....-..-..+...+....+ ....|+++|.||+|...
T Consensus 68 ~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~ 118 (160)
T cd00876 68 IR--QGDGFILVYSITDRESFEEIKGYREQILRVKD-DEDIPIVLVGNKCDLEN 118 (160)
T ss_pred Hh--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECCcccc
Confidence 33 56999999776543210011223333333322 13589999999999874
No 93
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.09 E-value=1e-09 Score=105.68 Aligned_cols=116 Identities=18% Similarity=0.215 Sum_probs=69.3
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCcc-ceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHH
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPAT-DCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 155 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT-~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~I 155 (704)
.++|+++|.+|||||||+|++.+...... ..+++ .+.........+ ..+.++||||.... ... .
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~--~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~--------~~~---~ 69 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPS--FISTIGIDFKIRTIELDGKKIKLQIWDTAGQERF--------RTI---T 69 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcc--cccCccceEEEEEEEECCEEEEEEEEeCCchHHH--------HHH---H
Confidence 58999999999999999999998653221 11221 122222223344 47889999996321 111 1
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCc-HHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 156 KKFIRRSPPDIVLYFERLDLISMGFSD-FPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 156 k~~ik~~~~dvVL~Vi~ld~~t~~~~D-~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
..+++ .+|++++|.+++.... ..+ ...+..+.... ....|+++|.||+|+..
T Consensus 70 ~~~~~--~ad~~i~v~d~~~~~s-~~~~~~~~~~i~~~~--~~~~p~iiv~nK~Dl~~ 122 (167)
T cd01867 70 TAYYR--GAMGIILVYDITDEKS-FENIRNWMRNIEEHA--SEDVERMLVGNKCDMEE 122 (167)
T ss_pred HHHhC--CCCEEEEEEECcCHHH-HHhHHHHHHHHHHhC--CCCCcEEEEEECccccc
Confidence 23333 6799999987754221 111 12333333321 23479999999999873
No 94
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.09 E-value=2e-09 Score=102.48 Aligned_cols=116 Identities=14% Similarity=0.129 Sum_probs=68.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCC-CccccCCCCcc-ceEEEEEeeE---cCeEEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQT-KTETDAFQPAT-DCIREVKGSV---NGIKVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~-~a~vs~~~~tT-~~~~~~~~~~---~G~~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
++|+++|.+|||||||+|++.+.. .+. ....+++ .++....... ...++.++||||.... ...
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~--- 68 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFP-KNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELY--------SDM--- 68 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcC-ccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHH--------HHH---
Confidence 589999999999999999998642 222 2223333 1222222222 3368899999996211 122
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 155 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 155 Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
...+++ .+|++++|.+++....-......+..+... ....|+|+|.||+|+..
T Consensus 69 ~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~---~~~~p~ilv~nK~Dl~~ 121 (164)
T cd04101 69 VSNYWE--SPSVFILVYDVSNKASFENCSRWVNKVRTA---SKHMPGVLVGNKMDLAD 121 (164)
T ss_pred HHHHhC--CCCEEEEEEECcCHHHHHHHHHHHHHHHHh---CCCCCEEEEEECccccc
Confidence 223443 679999998775432100111233333322 13479999999999863
No 95
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.09 E-value=9.3e-10 Score=105.77 Aligned_cols=116 Identities=16% Similarity=0.073 Sum_probs=67.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCcc-ceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPAT-DCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT-~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
++|+++|.+|||||||+|++.+...... ..+++ .+........++ ..+.++||||.... .... .
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~--------~~~~---~ 68 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSA--FVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERY--------RTIT---T 68 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCceeeEEEEEEEEECCEEEEEEEEECCChHHH--------HHHH---H
Confidence 6899999999999999999998764322 12221 112111222233 57899999996422 1111 2
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 157 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
.++ ..+|++++|.++.....-..-...++.+.... ....|+++|.||+|+..
T Consensus 69 ~~~--~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piivv~nK~Dl~~ 120 (165)
T cd01865 69 AYY--RGAMGFILMYDITNEESFNAVQDWSTQIKTYS--WDNAQVILVGNKCDMED 120 (165)
T ss_pred HHc--cCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCCEEEEEECcccCc
Confidence 233 36799999977654321001112233333221 12468999999999863
No 96
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.09 E-value=9.5e-10 Score=103.56 Aligned_cols=116 Identities=14% Similarity=0.161 Sum_probs=69.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCcc-ceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPAT-DCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT-~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
++|+++|.+|||||||+|++++....... .+++ ...........+ ..+.++||||.... .... .
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~---~ 67 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKH--ESTTQASFFQKTVNIGGKRIDLAIWDTAGQERY--------HALG---P 67 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCc--CCccceeEEEEEEEECCEEEEEEEEECCchHHH--------HHhh---H
Confidence 48999999999999999999987654321 2222 222222233333 46889999995321 1111 1
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 157 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
.++ ..+|++++|++++....-..-...++.+...... ..|+++|+||+|...
T Consensus 68 ~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~nK~D~~~ 119 (162)
T cd04123 68 IYY--RDADGAILVYDITDADSFQKVKKWIKELKQMRGN--NISLVIVGNKIDLER 119 (162)
T ss_pred HHh--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccc
Confidence 223 2679999998765432100111233344444322 579999999999763
No 97
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.09 E-value=8.9e-10 Score=104.33 Aligned_cols=116 Identities=13% Similarity=0.082 Sum_probs=68.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHh
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 160 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik 160 (704)
+|+++|.+|||||||+|+|.+...... ...++ ...........+.++.++||||.... ...+ ..+++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~-~~~~t-~g~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~~---~~~~~ 67 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQ-IIVPT-VGFNVESFEKGNLSFTAFDMSGQGKY--------RGLW---EHYYK 67 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcc-eecCc-cccceEEEEECCEEEEEEECCCCHhh--------HHHH---HHHHc
Confidence 589999999999999999998653221 11122 11222223456789999999997432 1111 22332
Q ss_pred cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhc-ccccccEEEEEEccCCC
Q 005287 161 RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFG-TAIWFNTILVMTHSSST 211 (704)
Q Consensus 161 ~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG-~~~~k~vIVVLTK~D~l 211 (704)
.+|+++||++......-......+..+..... .....|+++|+||+|+.
T Consensus 68 --~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~ 117 (162)
T cd04157 68 --NIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLP 117 (162)
T ss_pred --cCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCcccc
Confidence 67999999776533210001112222222111 11358999999999976
No 98
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.09 E-value=1.1e-09 Score=106.06 Aligned_cols=112 Identities=16% Similarity=0.124 Sum_probs=67.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCcccc-----C---------CCCccceEEEEEee-----EcCeEEEEEECCCCCCcc
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTETD-----A---------FQPATDCIREVKGS-----VNGIKVTFIDTPGFLPSC 141 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~vs-----~---------~~~tT~~~~~~~~~-----~~G~~v~LIDTPGl~d~~ 141 (704)
+|+++|.+|||||||+|+|++...+... . ..+.|......... ..+..+.|+||||..+..
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 6899999999999999999875322110 0 11233333322222 245678899999995431
Q ss_pred cchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 142 VRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 142 ~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
.....+++ .+|++++|+++..... ..+...+..+.. ...|+++|+||+|+.
T Consensus 82 -----------~~~~~~~~--~ad~~i~v~D~~~~~~-~~~~~~~~~~~~-----~~~~iiiv~NK~Dl~ 132 (179)
T cd01890 82 -----------YEVSRSLA--ACEGALLLVDATQGVE-AQTLANFYLALE-----NNLEIIPVINKIDLP 132 (179)
T ss_pred -----------HHHHHHHH--hcCeEEEEEECCCCcc-HhhHHHHHHHHH-----cCCCEEEEEECCCCC
Confidence 12223443 5799999987653211 123333332221 247899999999975
No 99
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.09 E-value=9.5e-10 Score=104.74 Aligned_cols=117 Identities=16% Similarity=0.145 Sum_probs=70.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
++|+|+|.+|||||||+|++++..... ...+++.+........++ ..+.++||||.... ..+. ..
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~--------~~~~---~~ 67 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVD--DYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEF--------SAMR---DQ 67 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCc--ccCCchhhhEEEEEEECCEEEEEEEEECCCcccc--------hHHH---HH
Confidence 489999999999999999999876432 233444443333344444 46778999997543 1111 12
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
+++ ..|++++|.+++....-..-......+.+... ....|+++|.||+|+..
T Consensus 68 ~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~pii~v~nK~Dl~~ 119 (164)
T smart00173 68 YMR--TGEGFLLVYSITDRQSFEEIKKFREQILRVKD-RDDVPIVLVGNKCDLES 119 (164)
T ss_pred HHh--hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence 333 56899999776543210001112223333222 12479999999999763
No 100
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.08 E-value=1.5e-09 Score=103.84 Aligned_cols=118 Identities=14% Similarity=0.174 Sum_probs=67.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
++|+|+|.+|||||||+|++++........ +..+.+.......+.+ ..+.++||||.... ... ...
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~---~~~ 68 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYK-ATIGADFLTKEVTVDDKLVTLQIWDTAGQERF--------QSL---GVA 68 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcC-CccceEEEEEEEEECCEEEEEEEEeCCChHHH--------HhH---HHH
Confidence 589999999999999999999876432211 1112222222233444 45679999996321 111 123
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcH-HHHHHHHHHhcc--cccccEEEEEEccCCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSDF-PLLKLMTEVFGT--AIWFNTILVMTHSSSTL 212 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D~-~lLk~L~~~fG~--~~~k~vIVVLTK~D~l~ 212 (704)
+++ .+|++++|.+++.... .... .+...+...... ....|+++|+||+|+..
T Consensus 69 ~~~--~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (172)
T cd01862 69 FYR--GADCCVLVYDVTNPKS-FESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE 123 (172)
T ss_pred Hhc--CCCEEEEEEECCCHHH-HHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc
Confidence 332 6799999977654321 0111 122222222211 12479999999999974
No 101
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.08 E-value=6.5e-10 Score=110.08 Aligned_cols=114 Identities=18% Similarity=0.208 Sum_probs=77.7
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccc-----------------cCCCCccceEEEEEee--EcCeEEEEEECCCCCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTET-----------------DAFQPATDCIREVKGS--VNGIKVTFIDTPGFLP 139 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~v-----------------s~~~~tT~~~~~~~~~--~~G~~v~LIDTPGl~d 139 (704)
-++|+++|..++|||||+++|++...... ....+.|......... ..+..+++|||||..+
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence 47899999999999999999986542211 0113456666666666 8899999999999732
Q ss_pred cccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 140 SCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 140 ~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
....+.+.+. .+|++++|+++...- .......++.+... ..|+|+|+||+|..
T Consensus 83 -----------f~~~~~~~~~--~~D~ailvVda~~g~-~~~~~~~l~~~~~~-----~~p~ivvlNK~D~~ 135 (188)
T PF00009_consen 83 -----------FIKEMIRGLR--QADIAILVVDANDGI-QPQTEEHLKILREL-----GIPIIVVLNKMDLI 135 (188)
T ss_dssp -----------HHHHHHHHHT--TSSEEEEEEETTTBS-THHHHHHHHHHHHT-----T-SEEEEEETCTSS
T ss_pred -----------eeecccceec--ccccceeeeeccccc-cccccccccccccc-----ccceEEeeeeccch
Confidence 2233334443 679999998775332 12344455555443 47899999999977
No 102
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.08 E-value=1.2e-09 Score=101.74 Aligned_cols=111 Identities=14% Similarity=0.127 Sum_probs=67.8
Q ss_pred EEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhc
Q 005287 82 ILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRR 161 (704)
Q Consensus 82 IlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~ 161 (704)
|+++|++|||||||+|+|.+.+.... .. + |..........++..+.++||||.... .. ....+++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~-~~-~-t~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~---~~~~~~~- 66 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSED-TI-P-TVGFNMRKVTKGNVTLKVWDLGGQPRF--------RS---MWERYCR- 66 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcC-cc-C-CCCcceEEEEECCEEEEEEECCCCHhH--------HH---HHHHHHh-
Confidence 79999999999999999999764322 11 2 222222233456788999999997322 11 1223343
Q ss_pred CCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc--cccccEEEEEEccCCC
Q 005287 162 SPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSST 211 (704)
Q Consensus 162 ~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~--~~~k~vIVVLTK~D~l 211 (704)
.+|++++|+++..... -......+...... ....|+++|+||+|..
T Consensus 67 -~~d~ii~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 114 (159)
T cd04159 67 -GVNAIVYVVDAADRTA---LEAAKNELHDLLEKPSLEGIPLLVLGNKNDLP 114 (159)
T ss_pred -cCCEEEEEEECCCHHH---HHHHHHHHHHHHcChhhcCCCEEEEEeCcccc
Confidence 5799999977654321 11122233332211 1246999999999976
No 103
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.07 E-value=1.7e-09 Score=102.56 Aligned_cols=111 Identities=16% Similarity=0.141 Sum_probs=67.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeE-cCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHH
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSV-NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 159 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~-~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~i 159 (704)
+|+++|.+|||||||+|.+++....... + |.......... ....+.++||||.... ...+ ..++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~---~-t~~~~~~~~~~~~~~~l~i~D~~G~~~~--------~~~~---~~~~ 65 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTI---P-TVGFNVEMLQLEKHLSLTVWDVGGQEKM--------RTVW---KCYL 65 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccccc---C-ccCcceEEEEeCCceEEEEEECCCCHhH--------HHHH---HHHh
Confidence 5899999999999999999988754332 2 22111111122 3568999999997421 1111 2233
Q ss_pred hcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccc--ccccEEEEEEccCCC
Q 005287 160 RRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA--IWFNTILVMTHSSST 211 (704)
Q Consensus 160 k~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~--~~k~vIVVLTK~D~l 211 (704)
. .+|++++|++...... -......+.+.+... ...|+++|+||+|+.
T Consensus 66 ~--~~~~iv~v~D~~~~~~---~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 114 (160)
T cd04156 66 E--NTDGLVYVVDSSDEAR---LDESQKELKHILKNEHIKGVPVVLLANKQDLP 114 (160)
T ss_pred c--cCCEEEEEEECCcHHH---HHHHHHHHHHHHhchhhcCCCEEEEEECcccc
Confidence 2 5799999977654320 112233333332211 257999999999975
No 104
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.07 E-value=1.9e-09 Score=102.76 Aligned_cols=111 Identities=14% Similarity=0.101 Sum_probs=68.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHh
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 160 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik 160 (704)
+|+++|.+|||||||+|+|........ .+ |...........+..+.++||||.... .... ..++.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~---~~-t~~~~~~~~~~~~~~~~i~Dt~G~~~~--------~~~~---~~~~~ 65 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTT---IP-TIGFNVETVTYKNLKFQVWDLGGQTSI--------RPYW---RCYYS 65 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCc---CC-ccCcCeEEEEECCEEEEEEECCCCHHH--------HHHH---HHHhc
Confidence 589999999999999999977654321 12 222222234456789999999998432 1111 23343
Q ss_pred cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc--cccccEEEEEEccCCC
Q 005287 161 RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSST 211 (704)
Q Consensus 161 ~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~--~~~k~vIVVLTK~D~l 211 (704)
.+|++++|++++.... -....+.+...+.. ....|+++|+||+|+.
T Consensus 66 --~~~~ii~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~ 113 (158)
T cd04151 66 --NTDAIIYVVDSTDRDR---LGTAKEELHAMLEEEELKGAVLLVFANKQDMP 113 (158)
T ss_pred --CCCEEEEEEECCCHHH---HHHHHHHHHHHHhchhhcCCcEEEEEeCCCCC
Confidence 6799999987654321 01112223222211 1247999999999975
No 105
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.07 E-value=1.6e-09 Score=103.53 Aligned_cols=118 Identities=18% Similarity=0.138 Sum_probs=71.5
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCe--EEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~--~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
.++|+++|.+|||||||+|+++.... .....+++.+........++. .+.++||||.... ..+..
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~~~--- 67 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF--------TAMRD--- 67 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCC--CcccCCcchheEEEEEEECCEEEEEEEEECCCcccc--------hhHHH---
Confidence 36899999999999999999986432 223345554443344455554 5678999997432 11111
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 157 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
.+++ ..|++++|.+++....-......+..+.... .....|+++|.||+|+..
T Consensus 68 ~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~ 120 (164)
T cd04175 68 LYMK--NGQGFVLVYSITAQSTFNDLQDLREQILRVK-DTEDVPMILVGNKCDLED 120 (164)
T ss_pred HHHh--hCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECCcchh
Confidence 1222 5689999977654321001122333343322 123479999999999863
No 106
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.06 E-value=2.4e-09 Score=101.59 Aligned_cols=115 Identities=17% Similarity=0.100 Sum_probs=67.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCc-cceEEEEEeeE----cCeEEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPA-TDCIREVKGSV----NGIKVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~t-T~~~~~~~~~~----~G~~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
++|+++|.+|+|||||+|.+++...... ..++ +.+........ .+..+.|+||||.... ...
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--------~~~--- 67 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKD--YKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEF--------DAI--- 67 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHH--------HHh---
Confidence 4899999999999999999998653221 1122 12222222222 2467899999995221 111
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 155 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 155 Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
...+++ .+|++++|.+++....-..-...+..+... ....|+++|.||+|+..
T Consensus 68 ~~~~~~--~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~---~~~~p~iiv~nK~Dl~~ 120 (162)
T cd04106 68 TKAYYR--GAQACILVFSTTDRESFEAIESWKEKVEAE---CGDIPMVLVQTKIDLLD 120 (162)
T ss_pred HHHHhc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHh---CCCCCEEEEEEChhccc
Confidence 123343 679999997765432100111222223221 12479999999999874
No 107
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.06 E-value=1.3e-09 Score=103.36 Aligned_cols=112 Identities=13% Similarity=0.089 Sum_probs=69.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHh
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 160 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik 160 (704)
+|+++|.+|||||||+|++++...... ..|.........+.+..+.++||||.... .... ..+++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~G~~~~--------~~~~---~~~~~ 65 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTT----IPTIGFNVETVEYKNVSFTVWDVGGQDKI--------RPLW---KHYYE 65 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCC----CCCcCcceEEEEECCEEEEEEECCCChhh--------HHHH---HHHhc
Confidence 589999999999999999999873222 11222222334456789999999997532 1111 22333
Q ss_pred cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc--cccccEEEEEEccCCCC
Q 005287 161 RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSSTL 212 (704)
Q Consensus 161 ~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~--~~~k~vIVVLTK~D~l~ 212 (704)
.+|++++|+++..... -......+...+.. ....|+++|+||+|...
T Consensus 66 --~~~~~i~v~D~~~~~~---~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 114 (158)
T cd00878 66 --NTNGIIFVVDSSDRER---IEEAKEELHKLLNEEELKGVPLLIFANKQDLPG 114 (158)
T ss_pred --cCCEEEEEEECCCHHH---HHHHHHHHHHHHhCcccCCCcEEEEeeccCCcc
Confidence 5699999977654311 11122223222221 22579999999999864
No 108
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.06 E-value=1.4e-09 Score=104.37 Aligned_cols=114 Identities=15% Similarity=0.123 Sum_probs=67.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCcc-ceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPAT-DCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT-~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
++|+++|.+|||||||+|++++....... .++. ..........++ ..+.++||||.... .. ...
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--------~~---~~~ 67 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQ--LSTYALTLYKHNAKFEGKTILVDFWDTAGQERF--------QT---MHA 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCc--CCceeeEEEEEEEEECCEEEEEEEEeCCCchhh--------hh---hhH
Confidence 58999999999999999999876532221 1111 112222223333 46789999996421 11 122
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 157 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
.+++ .+|++++|++++...........+..+.+.. ...|+++|.||+|+.
T Consensus 68 ~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~p~ivv~nK~Dl~ 117 (161)
T cd04124 68 SYYH--KAHACILVFDVTRKITYKNLSKWYEELREYR---PEIPCIVVANKIDLD 117 (161)
T ss_pred HHhC--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEECccCc
Confidence 3343 6799999987654321001123344443321 247999999999974
No 109
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.06 E-value=1.3e-09 Score=115.04 Aligned_cols=112 Identities=16% Similarity=0.085 Sum_probs=75.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCC-----cccc------------CCCCccceEEEEEeeEcCeEEEEEECCCCCCcccc
Q 005287 81 RILVLGKTGVGKSATINSIFDQTK-----TETD------------AFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVR 143 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~-----a~vs------------~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~ 143 (704)
+|+++|++|+|||||+|+|+.... ..+. ...+.|.+.....+.+.+.++.+|||||..+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df--- 77 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDF--- 77 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHH---
Confidence 589999999999999999973211 1111 12345666666777889999999999998542
Q ss_pred hhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 144 NVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 144 ~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
...+.++++ .+|++++|++....- ...+..+++.+... .+|+++++||+|..
T Consensus 78 --------~~~~~~~l~--~aD~ailVVDa~~g~-~~~t~~~~~~~~~~-----~~p~ivviNK~D~~ 129 (270)
T cd01886 78 --------TIEVERSLR--VLDGAVAVFDAVAGV-EPQTETVWRQADRY-----NVPRIAFVNKMDRT 129 (270)
T ss_pred --------HHHHHHHHH--HcCEEEEEEECCCCC-CHHHHHHHHHHHHc-----CCCEEEEEECCCCC
Confidence 122334443 569999997664321 12344555555443 47999999999976
No 110
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.06 E-value=6.2e-10 Score=106.35 Aligned_cols=117 Identities=19% Similarity=0.109 Sum_probs=70.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEc--CeEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVN--GIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~--G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
++|+++|.+|||||||+|+|++...... ..+++.+......... ...+.++||||...... ... .
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~--------~~~---~ 67 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTE--YVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDR--------LRP---L 67 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC--CCCceeeeeEEEEEECCEEEEEEEEeCCCcccccc--------cch---h
Confidence 5899999999999999999998775211 1222222222222333 45689999999864311 000 1
Q ss_pred HHhcCCCCEEEEEEeccCcc-CCCCcHHHHHHHHHHhcccccccEEEEEEccCCCCCC
Q 005287 158 FIRRSPPDIVLYFERLDLIS-MGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPE 214 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t-~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~pd 214 (704)
++ ..+|++++|.+++... ........+..+.... ...|+++|.||+|+..+.
T Consensus 68 ~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~ 120 (171)
T cd00157 68 SY--PNTDVFLICFSVDSPSSFENVKTKWIPEIRHYC---PNVPIILVGTKIDLRDDE 120 (171)
T ss_pred hc--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEEccHHhhhch
Confidence 11 3679999998776422 1101112233333322 258999999999987543
No 111
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.06 E-value=1.8e-09 Score=106.97 Aligned_cols=117 Identities=18% Similarity=0.189 Sum_probs=69.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccc-eEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATD-CIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~-~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
++|+|+|.+|||||||+|.+.+..... ....+++. +.......+++ ..+.|+||||-... .. ...
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--------~~---~~~ 68 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLN-GNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERF--------RS---VTH 68 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCc-cCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHH--------HH---hhH
Confidence 589999999999999999998876322 22223322 22222234444 47789999995211 11 112
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 157 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
.+++ .+|++++|++++....-..-...+..+.+... ...|+++|.||+|+..
T Consensus 69 ~~~~--~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~piiiv~NK~Dl~~ 120 (191)
T cd04112 69 AYYR--DAHALLLLYDITNKASFDNIRAWLTEIKEYAQ--EDVVIMLLGNKADMSG 120 (191)
T ss_pred HHcc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEEcccchh
Confidence 2332 67999999877543210011223344444321 2479999999999863
No 112
>CHL00071 tufA elongation factor Tu
Probab=99.05 E-value=2.1e-09 Score=119.67 Aligned_cols=118 Identities=11% Similarity=0.025 Sum_probs=78.8
Q ss_pred CCCCeEEEEEeCCCCcHHHHHHHHhCCCCccc---------------cCCCCccceEEEEEeeEcCeEEEEEECCCCCCc
Q 005287 76 LDFSIRILVLGKTGVGKSATINSIFDQTKTET---------------DAFQPATDCIREVKGSVNGIKVTFIDTPGFLPS 140 (704)
Q Consensus 76 ~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~v---------------s~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~ 140 (704)
....++|+++|++++|||||+|+|++...... ....+.|.++....+..++.++.|+||||..
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~-- 86 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA-- 86 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH--
Confidence 44569999999999999999999997522111 0114566666666666778899999999963
Q ss_pred ccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccccccc-EEEEEEccCCCC
Q 005287 141 CVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFN-TILVMTHSSSTL 212 (704)
Q Consensus 141 ~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~-vIVVLTK~D~l~ 212 (704)
.....+...+. .+|++++|++....- ..++...+..+... ..| +|+++||+|+..
T Consensus 87 ---------~~~~~~~~~~~--~~D~~ilVvda~~g~-~~qt~~~~~~~~~~-----g~~~iIvvvNK~D~~~ 142 (409)
T CHL00071 87 ---------DYVKNMITGAA--QMDGAILVVSAADGP-MPQTKEHILLAKQV-----GVPNIVVFLNKEDQVD 142 (409)
T ss_pred ---------HHHHHHHHHHH--hCCEEEEEEECCCCC-cHHHHHHHHHHHHc-----CCCEEEEEEEccCCCC
Confidence 12223333333 679999998765321 12445555554433 356 778999999863
No 113
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.05 E-value=1.7e-09 Score=106.56 Aligned_cols=115 Identities=17% Similarity=0.214 Sum_probs=68.5
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCcc-ceEEEEEe---eEcCeEEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPAT-DCIREVKG---SVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT-~~~~~~~~---~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
.++|+++|.+|||||||+|++++...... . +++ ........ ...+..+.++||||.... ...+
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~--~-~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~--------~~~~-- 69 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT--V-PTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKL--------RPLW-- 69 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc--C-CccccceeEEEeeccCCCceEEEEEECCCcHhH--------HHHH--
Confidence 58999999999999999999987653321 1 221 12222222 224678999999997321 1122
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCc-HHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 155 VKKFIRRSPPDIVLYFERLDLISMGFSD-FPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 155 Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D-~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
..+++ .+|++++|++++.... ..+ ...+..+.... .....|+++|+||+|+.
T Consensus 70 -~~~~~--~~d~ii~v~D~~~~~~-~~~~~~~~~~i~~~~-~~~~~p~iiv~NK~D~~ 122 (183)
T cd04152 70 -KSYTR--CTDGIVFVVDSVDVER-MEEAKTELHKITRFS-ENQGVPVLVLANKQDLP 122 (183)
T ss_pred -HHHhc--cCCEEEEEEECCCHHH-HHHHHHHHHHHHhhh-hcCCCcEEEEEECcCcc
Confidence 22332 6799999987654321 011 11222222221 12357999999999975
No 114
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.05 E-value=3.3e-10 Score=109.17 Aligned_cols=57 Identities=23% Similarity=0.317 Sum_probs=49.8
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCC
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGF 137 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl 137 (704)
..++|+++|.||||||||||+|++.....++..+++|+....+.. +..+.++||||+
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITL---MKRIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEc---CCCEEEEECcCC
Confidence 468999999999999999999999999999999999988776653 345899999996
No 115
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.05 E-value=1.2e-09 Score=126.92 Aligned_cols=113 Identities=18% Similarity=0.271 Sum_probs=79.9
Q ss_pred eCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCC
Q 005287 86 GKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPD 165 (704)
Q Consensus 86 GkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~d 165 (704)
|.+|||||||+|+|+|.. ..++..+++|.+.......+++.++.++||||..+.... ...+.+. +.++....+|
T Consensus 1 G~pNvGKSSL~N~Ltg~~-~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~--s~~e~v~---~~~l~~~~aD 74 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGAN-QTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTF--SLEEEVA---RDYLLNEKPD 74 (591)
T ss_pred CCCCCCHHHHHHHHhCCC-CeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCcc--chHHHHH---HHHHhhcCCC
Confidence 899999999999999986 467778888988888777888999999999999764321 1112222 2344445789
Q ss_pred EEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 166 IVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 166 vVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
++++|++.+... ........+.+ ...|+++|+||+|+..
T Consensus 75 vvI~VvDat~le---r~l~l~~ql~~-----~~~PiIIVlNK~Dl~~ 113 (591)
T TIGR00437 75 LVVNVVDASNLE---RNLYLTLQLLE-----LGIPMILALNLVDEAE 113 (591)
T ss_pred EEEEEecCCcch---hhHHHHHHHHh-----cCCCEEEEEehhHHHH
Confidence 999997765432 12233333332 2489999999999863
No 116
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.05 E-value=3.6e-09 Score=103.88 Aligned_cols=114 Identities=13% Similarity=0.123 Sum_probs=73.9
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
...+|+++|++|||||||+|.|.+...... ..|.........+++.++.++||||.... ... ...
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~~----~~T~~~~~~~i~~~~~~~~l~D~~G~~~~--------~~~---~~~ 82 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQH----VPTLHPTSEELTIGNIKFKTFDLGGHEQA--------RRL---WKD 82 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCccc----CCccCcceEEEEECCEEEEEEECCCCHHH--------HHH---HHH
Confidence 468999999999999999999998764322 12333334455667899999999996321 111 123
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc--cccccEEEEEEccCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSST 211 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~--~~~k~vIVVLTK~D~l 211 (704)
+++ .+|++++|++...... -......+.+.++. ....|+++|+||+|+.
T Consensus 83 ~~~--~ad~iilV~D~~~~~s---~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~ 133 (190)
T cd00879 83 YFP--EVDGIVFLVDAADPER---FQESKEELDSLLSDEELANVPFLILGNKIDLP 133 (190)
T ss_pred Hhc--cCCEEEEEEECCcHHH---HHHHHHHHHHHHcCccccCCCEEEEEeCCCCC
Confidence 343 5699999977653211 11233444444432 2348999999999975
No 117
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.05 E-value=1.7e-09 Score=106.55 Aligned_cols=116 Identities=15% Similarity=0.112 Sum_probs=69.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccce-EEEEEeeEcCe--EEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDC-IREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~-~~~~~~~~~G~--~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
++|+|+|.+|||||||+|++++.... .+...+++.. ........+|. .+.++||||.... ..+. .
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~--------~~~~---~ 68 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFL-VGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERY--------EAMS---R 68 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcC-CcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhh--------hhhh---H
Confidence 58999999999999999999986532 2223333322 11223344554 4569999997432 1111 1
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 157 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
.++ ..+|++++|.+++....-.....++..+... ....|+++|.||+|+..
T Consensus 69 ~~~--~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~---~~~~piilv~nK~Dl~~ 119 (193)
T cd04118 69 IYY--RGAKAAIVCYDLTDSSSFERAKFWVKELQNL---EEHCKIYLCGTKSDLIE 119 (193)
T ss_pred hhc--CCCCEEEEEEECCCHHHHHHHHHHHHHHHhc---CCCCCEEEEEEcccccc
Confidence 222 2679999998775432100111233333322 22479999999999763
No 118
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.04 E-value=3.8e-09 Score=102.77 Aligned_cols=114 Identities=11% Similarity=0.069 Sum_probs=71.5
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
..++|+++|.+|||||||+|+|....... ..+++ ..........+..+.++||||.... .... ..
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~---~~~t~-g~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~~---~~ 72 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVT---TIPTV-GFNVETVTYKNVKFNVWDVGGQDKI--------RPLW---RH 72 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCcc---ccCCc-ccceEEEEECCEEEEEEECCCCHHH--------HHHH---HH
Confidence 35899999999999999999998654322 22222 1211233346789999999998422 1121 12
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccc--ccccEEEEEEccCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA--IWFNTILVMTHSSST 211 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~--~~k~vIVVLTK~D~l 211 (704)
+++ .+|+++||+++..... -....+.+.+.+... ...|+++|.||+|+.
T Consensus 73 ~~~--~a~~ii~v~D~t~~~s---~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 123 (168)
T cd04149 73 YYT--GTQGLIFVVDSADRDR---IDEARQELHRIINDREMRDALLLVFANKQDLP 123 (168)
T ss_pred Hhc--cCCEEEEEEeCCchhh---HHHHHHHHHHHhcCHhhcCCcEEEEEECcCCc
Confidence 332 6799999987654321 122334444443221 247999999999975
No 119
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.04 E-value=2.8e-09 Score=102.54 Aligned_cols=115 Identities=13% Similarity=0.119 Sum_probs=71.5
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
...++|+++|++|||||||+|.|.+........ |...........+..+.++||||.... .....
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~----t~g~~~~~i~~~~~~~~~~D~~G~~~~-----------~~~~~ 76 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISHITP----TQGFNIKTVQSDGFKLNVWDIGGQRAI-----------RPYWR 76 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcccCC----CCCcceEEEEECCEEEEEEECCCCHHH-----------HHHHH
Confidence 347999999999999999999999975433221 222222334456889999999997321 11222
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc--cccccEEEEEEccCCC
Q 005287 157 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSST 211 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~--~~~k~vIVVLTK~D~l 211 (704)
.+++ .+|++++|+++..... -......+...... ....|+++++||+|..
T Consensus 77 ~~~~--~~~~ii~v~D~~~~~~---~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 128 (173)
T cd04155 77 NYFE--NTDCLIYVIDSADKKR---LEEAGAELVELLEEEKLAGVPVLVFANKQDLA 128 (173)
T ss_pred HHhc--CCCEEEEEEeCCCHHH---HHHHHHHHHHHHhChhhcCCCEEEEEECCCCc
Confidence 3333 6789999977653221 11122222222211 1247999999999976
No 120
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.03 E-value=4e-09 Score=102.79 Aligned_cols=113 Identities=10% Similarity=0.037 Sum_probs=71.3
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHH
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 158 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ 158 (704)
..+|+++|.+|||||||+|.|.+...... ..|.........+.+.++.++||||.... ... ...+
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~l~D~~G~~~~--------~~~---~~~~ 79 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHT----SPTIGSNVEEIVYKNIRFLMWDIGGQESL--------RSS---WNTY 79 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCc----CCccccceEEEEECCeEEEEEECCCCHHH--------HHH---HHHH
Confidence 57999999999999999999987654322 12222223344567889999999998422 111 1223
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccc--ccccEEEEEEccCCC
Q 005287 159 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA--IWFNTILVMTHSSST 211 (704)
Q Consensus 159 ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~--~~k~vIVVLTK~D~l 211 (704)
++ .+|+++||++.+.... -......+.+.+... ...|+++|+||+|+.
T Consensus 80 ~~--~~d~vi~V~D~s~~~~---~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~ 129 (174)
T cd04153 80 YT--NTDAVILVIDSTDRER---LPLTKEELYKMLAHEDLRKAVLLVLANKQDLK 129 (174)
T ss_pred hh--cCCEEEEEEECCCHHH---HHHHHHHHHHHHhchhhcCCCEEEEEECCCCC
Confidence 33 6799999987654321 111223333333221 247999999999975
No 121
>COG2262 HflX GTPases [General function prediction only]
Probab=99.03 E-value=1.1e-09 Score=119.78 Aligned_cols=128 Identities=20% Similarity=0.159 Sum_probs=83.3
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeE-cCeEEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSV-NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~-~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
.-..|+++|.||+|||||+|+|++.....-+.. .+|-+.......+ +|.++.+.||-||... ....+...++
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~L-FATLdpttR~~~l~~g~~vlLtDTVGFI~~------LP~~LV~AFk 263 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQL-FATLDPTTRRIELGDGRKVLLTDTVGFIRD------LPHPLVEAFK 263 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCeeccccc-cccccCceeEEEeCCCceEEEecCccCccc------CChHHHHHHH
Confidence 346899999999999999999998876544322 2333333333333 3799999999999864 2345555665
Q ss_pred HHHhcC-CCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCCCC
Q 005287 157 KFIRRS-PPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPE 214 (704)
Q Consensus 157 ~~ik~~-~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~pd 214 (704)
..+... .+|++|.|++.+.......-......|.+. |.. ..|+|+|+||+|.+.++
T Consensus 264 sTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el-~~~-~~p~i~v~NKiD~~~~~ 320 (411)
T COG2262 264 STLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEI-GAD-EIPIILVLNKIDLLEDE 320 (411)
T ss_pred HHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHc-CCC-CCCEEEEEecccccCch
Confidence 555443 789999997765442211111223333332 322 38999999999988654
No 122
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.03 E-value=4e-10 Score=102.15 Aligned_cols=115 Identities=21% Similarity=0.227 Sum_probs=68.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCcc---ccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTE---TDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~---vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
||+|+|.+||||||||++|++..... .....+.|..............+.++|++|........ ..
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~----~~------- 69 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQH----QF------- 69 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTS----HH-------
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccc----cc-------
Confidence 79999999999999999999887651 12233333333333333334458899999984432110 11
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCc-HHHHHHHHHHhcccccccEEEEEEccC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSD-FPLLKLMTEVFGTAIWFNTILVMTHSS 209 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D-~~lLk~L~~~fG~~~~k~vIVVLTK~D 209 (704)
++. .+|++++|.++..... ... ..++.++...-+.....|+|+|.||.|
T Consensus 70 ~~~--~~d~~ilv~D~s~~~s-~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 70 FLK--KADAVILVYDLSDPES-LEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp HHH--HSCEEEEEEECCGHHH-HHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred hhh--cCcEEEEEEcCCChHH-HHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 121 5699999987664321 111 234445555433334489999999998
No 123
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.02 E-value=1.8e-09 Score=103.49 Aligned_cols=117 Identities=21% Similarity=0.236 Sum_probs=69.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCe--EEEEEECCCCCCcccchhhhhHHHHHHHHHH
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 158 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~--~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ 158 (704)
+|+|+|.+|||||||++++++... .....+++.........+++. .+.++||||...... .. ...+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~----~~~~ 68 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF--IGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADT------EQ----LERS 68 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc--ccccCCChHHhceEEEEECCEEEEEEEEECCCCccccc------ch----HHHH
Confidence 589999999999999999987442 223344443332333344554 578999999864211 11 1123
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 159 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 159 ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
++ .+|++++|.+++....-..-..++..+..........|+++|.||+|+.
T Consensus 69 ~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 119 (165)
T cd04146 69 IR--WADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLL 119 (165)
T ss_pred HH--hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchH
Confidence 32 5799999987764321001122333444332112358999999999975
No 124
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.02 E-value=3.2e-09 Score=102.91 Aligned_cols=111 Identities=12% Similarity=0.063 Sum_probs=71.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHh
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 160 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik 160 (704)
+|+++|.+|||||||+|++.+.... .. .+|...........+..+.++||||..... ..+ ..+++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~---~~-~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~--------~~~---~~~~~ 65 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM---QP-IPTIGFNVETVEYKNLKFTIWDVGGKHKLR--------PLW---KHYYL 65 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC---Cc-CCcCceeEEEEEECCEEEEEEECCCChhcc--------hHH---HHHhc
Confidence 5899999999999999999987421 22 234333333455678899999999985321 111 12232
Q ss_pred cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccc--ccccEEEEEEccCCC
Q 005287 161 RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA--IWFNTILVMTHSSST 211 (704)
Q Consensus 161 ~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~--~~k~vIVVLTK~D~l 211 (704)
.+|+++||++.+.... -..+...+...+... ...|+++|.||.|+.
T Consensus 66 --~ad~ii~V~D~s~~~s---~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 113 (169)
T cd04158 66 --NTQAVVFVVDSSHRDR---VSEAHSELAKLLTEKELRDALLLIFANKQDVA 113 (169)
T ss_pred --cCCEEEEEEeCCcHHH---HHHHHHHHHHHhcChhhCCCCEEEEEeCcCcc
Confidence 6799999987654321 112334444443221 236899999999975
No 125
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.02 E-value=3.9e-09 Score=106.85 Aligned_cols=117 Identities=14% Similarity=0.126 Sum_probs=70.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCcc-ceEEEEEeeEc---CeEEEEEECCCCCCcccchhhhhHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPAT-DCIREVKGSVN---GIKVTFIDTPGFLPSCVRNVKRNRKIMLSV 155 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT-~~~~~~~~~~~---G~~v~LIDTPGl~d~~~~~~~~n~~il~~I 155 (704)
++|+++|.+|||||||+|.+++..... ...++. .+.......+. ...+.|+||||.... ... .
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~--~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~--------~~l---~ 67 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGK--SYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIG--------GKM---L 67 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCC--CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHH--------HHH---H
Confidence 589999999999999999999865322 222332 23322233332 367899999996321 112 2
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc-cccccEEEEEEccCCC
Q 005287 156 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT-AIWFNTILVMTHSSST 211 (704)
Q Consensus 156 k~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~-~~~k~vIVVLTK~D~l 211 (704)
..+++ .+|++++|.+++....-..-...+..+.+.... ....|+++|.||+|+.
T Consensus 68 ~~~~~--~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~ 122 (215)
T cd04109 68 DKYIY--GAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLE 122 (215)
T ss_pred HHHhh--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccc
Confidence 23333 679999998776432100112244445554332 2235789999999986
No 126
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.02 E-value=4.9e-09 Score=101.64 Aligned_cols=111 Identities=12% Similarity=0.137 Sum_probs=69.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHh
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 160 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik 160 (704)
+|+++|.+|||||||+|.+.+....... + |...........+..+.++||||-... ... ...+++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~---~-t~g~~~~~~~~~~~~~~i~D~~G~~~~--------~~~---~~~~~~ 65 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVA---P-TVGFTPTKLRLDKYEVCIFDLGGGANF--------RGI---WVNYYA 65 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCcccc---C-cccceEEEEEECCEEEEEEECCCcHHH--------HHH---HHHHHc
Confidence 4899999999999999999987322221 1 222223344557889999999996321 111 223443
Q ss_pred cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccc--ccccEEEEEEccCCC
Q 005287 161 RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA--IWFNTILVMTHSSST 211 (704)
Q Consensus 161 ~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~--~~k~vIVVLTK~D~l 211 (704)
.+|+++||++...... -..+...+...+... ...|+++|.||.|+.
T Consensus 66 --~a~~ii~V~D~s~~~s---~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~ 113 (167)
T cd04161 66 --EAHGLVFVVDSSDDDR---VQEVKEILRELLQHPRVSGKPILVLANKQDKK 113 (167)
T ss_pred --CCCEEEEEEECCchhH---HHHHHHHHHHHHcCccccCCcEEEEEeCCCCc
Confidence 6799999977654321 112233344333221 257999999999975
No 127
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.02 E-value=3.2e-09 Score=101.96 Aligned_cols=116 Identities=19% Similarity=0.182 Sum_probs=69.0
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccc-eEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHH
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATD-CIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 155 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~-~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~I 155 (704)
.++|+++|.+|||||||+|++++..... ..++++. +........++ .++.++||||.... ... .
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~---~ 68 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMA--DCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERF--------RAV---T 68 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCC--CCCcccceeEEEEEEEECCEEEEEEEEECCCcHHH--------HHH---H
Confidence 3799999999999999999999765322 1222221 22222233444 46789999996321 111 2
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhc-ccccccEEEEEEccCCCC
Q 005287 156 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFG-TAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 156 k~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG-~~~~k~vIVVLTK~D~l~ 212 (704)
..+++ .+|++++|.+++.... -..+..++..... .....|+++|.||+|+..
T Consensus 69 ~~~~~--~~~~~ilv~d~~~~~s---~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~ 121 (166)
T cd04122 69 RSYYR--GAAGALMVYDITRRST---YNHLSSWLTDARNLTNPNTVIFLIGNKADLEA 121 (166)
T ss_pred HHHhc--CCCEEEEEEECCCHHH---HHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 23343 6799999987764321 1122233332211 112468999999999863
No 128
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.01 E-value=2.4e-09 Score=105.37 Aligned_cols=116 Identities=14% Similarity=0.099 Sum_probs=68.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
++|+++|.+|||||||+|++++....... .+..+.+........++ ..+.++||||.... ... ...
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~--------~~~---~~~ 68 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSEST-KSTIGVDFKIKTVYIENKIIKLQIWDTNGQERF--------RSL---NNS 68 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCceeeEEEEEEEEECCEEEEEEEEECCCcHHH--------Hhh---HHH
Confidence 58999999999999999999987643211 11112222222333444 46789999996322 111 122
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
++ ..+|++++|.+++....-..-...+..+....+. ..|+++|.||.|+.
T Consensus 69 ~~--~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~--~~~~ivv~nK~Dl~ 118 (188)
T cd04125 69 YY--RGAHGYLLVYDVTDQESFENLKFWINEINRYARE--NVIKVIVANKSDLV 118 (188)
T ss_pred Hc--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECCCCc
Confidence 33 2679999998775432100111223333333221 36899999999976
No 129
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.01 E-value=1.8e-09 Score=120.50 Aligned_cols=118 Identities=15% Similarity=0.132 Sum_probs=80.4
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCcccc------------------------------CCCCccceEEEEEeeEcC
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETD------------------------------AFQPATDCIREVKGSVNG 126 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs------------------------------~~~~tT~~~~~~~~~~~G 126 (704)
...++|+++|++++|||||+|.|+........ ..+++|.++....+..++
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 35699999999999999999999855433221 135778888888888899
Q ss_pred eEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCc-cCCCCcHHHHHHHHHHhcccccccEEEEE
Q 005287 127 IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLI-SMGFSDFPLLKLMTEVFGTAIWFNTILVM 205 (704)
Q Consensus 127 ~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~-t~~~~D~~lLk~L~~~fG~~~~k~vIVVL 205 (704)
.++.||||||..+.. .. +...+ ..+|++++|++.... .....+...+..+. .++ ..++++|+
T Consensus 84 ~~i~liDtpG~~~~~-------~~----~~~~~--~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~-~~~---~~~iivvi 146 (425)
T PRK12317 84 YYFTIVDCPGHRDFV-------KN----MITGA--SQADAAVLVVAADDAGGVMPQTREHVFLAR-TLG---INQLIVAI 146 (425)
T ss_pred eEEEEEECCCcccch-------hh----Hhhch--hcCCEEEEEEEcccCCCCCcchHHHHHHHH-HcC---CCeEEEEE
Confidence 999999999974321 11 11122 267999999877641 12223444444333 333 24689999
Q ss_pred EccCCC
Q 005287 206 THSSST 211 (704)
Q Consensus 206 TK~D~l 211 (704)
||+|+.
T Consensus 147 NK~Dl~ 152 (425)
T PRK12317 147 NKMDAV 152 (425)
T ss_pred Eccccc
Confidence 999986
No 130
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.01 E-value=5.3e-09 Score=100.08 Aligned_cols=119 Identities=17% Similarity=0.121 Sum_probs=69.7
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 155 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~I 155 (704)
..++|+++|.+|||||||+|++++...... ..+..+.+.......+.+ ..+.++||||.... .. ..
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~---~~ 73 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPG-QGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERF--------RS---IT 73 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCceeeEEEEEEEEECCEEEEEEEEECCCcHHH--------HH---HH
Confidence 348999999999999999999986543221 111112233333344555 45788999996322 11 11
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 156 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 156 k~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
..++. .+|++++|++++....-..-...+..+..... ...|.++|.||+|+..
T Consensus 74 ~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~~~i~v~NK~D~~~ 126 (169)
T cd04114 74 QSYYR--SANALILTYDITCEESFRCLPEWLREIEQYAN--NKVITILVGNKIDLAE 126 (169)
T ss_pred HHHhc--CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccc
Confidence 23443 57999999776532110001123333333322 2378899999999763
No 131
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.01 E-value=2.5e-09 Score=101.92 Aligned_cols=116 Identities=21% Similarity=0.174 Sum_probs=70.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCe--EEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~--~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
++|+++|.+|||||||+|.++....... ..+++..........+|. .+.|+||||..... .+.. .
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~~~---~ 68 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEK--YDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA--------SMRD---L 68 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCchhheEEEEEEECCEEEEEEEEECCCccccc--------chHH---H
Confidence 6899999999999999999997654322 233333333334444554 56789999974321 1111 1
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
+++ .+|++++|.+++....-..-...+..+.+... ....|+++|.||+|+.
T Consensus 69 ~~~--~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piviv~nK~Dl~ 119 (163)
T cd04176 69 YIK--NGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKG-YEKVPIILVGNKVDLE 119 (163)
T ss_pred HHh--hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccch
Confidence 232 57999999776543210011223334444322 2357999999999975
No 132
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.01 E-value=3.1e-09 Score=100.47 Aligned_cols=117 Identities=17% Similarity=0.163 Sum_probs=69.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEc--CeEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVN--GIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~--G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
++|+++|.+|||||||+|++++..... ...+++.+........+ +..+.++||||.... ... ...
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--------~~~---~~~ 67 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVE--DYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDY--------AAI---RDN 67 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCcc--ccCCcchhhEEEEEEECCEEEEEEEEECCChhhh--------hHH---HHH
Confidence 489999999999999999999765332 33344443333333344 357899999997432 111 112
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
+++ ..+++++|++++....-..-...+..+..... ....|+++|+||+|+..
T Consensus 68 ~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 68 YHR--SGEGFLLVFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLED 119 (164)
T ss_pred Hhh--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEcccccc
Confidence 332 55888888766532210001122333333211 23589999999999864
No 133
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.01 E-value=1.1e-10 Score=121.35 Aligned_cols=132 Identities=21% Similarity=0.324 Sum_probs=87.9
Q ss_pred CCCCeEEEEEeCCCCcHHHHHHHHhCCCCccc-c--CCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHH
Q 005287 76 LDFSIRILVLGKTGVGKSATINSIFDQTKTET-D--AFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRK 150 (704)
Q Consensus 76 ~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~v-s--~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~ 150 (704)
.++.++|+.||.||.|||||+++||+...-.. + ..+..--....+.....+ .+++|+||.||+|.-..+ ....-
T Consensus 39 ~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~-~Syk~ 117 (406)
T KOG3859|consen 39 QGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKE-DSYKP 117 (406)
T ss_pred cCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcc-cccch
Confidence 35899999999999999999999998653222 1 111111122222222233 368999999999864332 11111
Q ss_pred HH----HH----------HHHHH---hcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCCC
Q 005287 151 IM----LS----------VKKFI---RRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 213 (704)
Q Consensus 151 il----~~----------Ik~~i---k~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~p 213 (704)
+. .. +++.+ ..+++|+|||++...+.+....|.-+++.+... .++|.|+.|+|....
T Consensus 118 iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ldsk------VNIIPvIAKaDtisK 191 (406)
T KOG3859|consen 118 IVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDSK------VNIIPVIAKADTISK 191 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhhh------hhhHHHHHHhhhhhH
Confidence 11 11 12222 245899999999998888777888888888876 799999999998854
Q ss_pred C
Q 005287 214 E 214 (704)
Q Consensus 214 d 214 (704)
.
T Consensus 192 ~ 192 (406)
T KOG3859|consen 192 E 192 (406)
T ss_pred H
Confidence 3
No 134
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.00 E-value=2.3e-09 Score=106.10 Aligned_cols=116 Identities=18% Similarity=0.182 Sum_probs=69.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCe--EEEEEECCCCCCcccchhhhhHHHHHHHHHH
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 158 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~--~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ 158 (704)
+|+|+|.+|||||||+|++++..... ...+++..........++. .+.|+||||.... .... ..+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~~---~~~ 67 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVE--TYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEY--------TALR---DQW 67 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc--cCCCchHhhEEEEEEECCEEEEEEEEECCCchhh--------HHHH---HHH
Confidence 58999999999999999998755322 2334443322223344554 5788999996432 1111 123
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc-cccccEEEEEEccCCC
Q 005287 159 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT-AIWFNTILVMTHSSST 211 (704)
Q Consensus 159 ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~-~~~k~vIVVLTK~D~l 211 (704)
++ .+|++++|.+++....-..-..++..+...... ....|+|+|.||+|+.
T Consensus 68 ~~--~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~ 119 (190)
T cd04144 68 IR--EGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119 (190)
T ss_pred HH--hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcc
Confidence 33 579999998775432100112344444443321 2347999999999986
No 135
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.99 E-value=9.3e-11 Score=111.24 Aligned_cols=123 Identities=16% Similarity=0.102 Sum_probs=77.6
Q ss_pred ccccccchhhHHHHHHhhcCCCCchHHHHHHHHHh--h--------hcccccccch--hhhhh-cccchhHHHHhhcccc
Q 005287 4 PLVKIEDLQVKFLRLLQRFGQSQDNILAVKVLYRL--H--------LATLIRAGES--DMKMV-NLRSDRTRAIAREQEA 70 (704)
Q Consensus 4 ~~~ki~~~rvk~lrl~~R~G~s~ed~~VaqvL~rl--~--------lae~~~~~~~--~~~~~-~lg~d~a~~ia~~~~~ 70 (704)
.++-++.+++.++.++.+.+.+..+..+...+.+. + |++....... ....+ ..+. ....++
T Consensus 5 ~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~-~ii~iS----- 78 (141)
T cd01857 5 LWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEGI-VVVFFS----- 78 (141)
T ss_pred HHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcCC-eEEEEE-----
Confidence 34556777777888888888888877777777654 2 2322111100 00000 0110 000010
Q ss_pred CCCCCCCCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCC
Q 005287 71 TGIPDLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLP 139 (704)
Q Consensus 71 ~~~~~~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d 139 (704)
......+++++|.+||||||++|+|++.....++..+++|++...+.. ++ .+.|+||||+..
T Consensus 79 ----a~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~i~DtpG~~~ 140 (141)
T cd01857 79 ----ALKENATIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFL--TP-TITLCDCPGLVF 140 (141)
T ss_pred ----ecCCCcEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEe--CC-CEEEEECCCcCC
Confidence 111123899999999999999999999988777777778887766554 22 689999999953
No 136
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.99 E-value=1.1e-10 Score=123.98 Aligned_cols=146 Identities=20% Similarity=0.201 Sum_probs=90.5
Q ss_pred HHHHHHhhcCCCCchHHHHHHHHHhhhcccccccc-hhhhhhc-ccchhHHHHhhccccCCC----CCCCCCeEEEEEeC
Q 005287 14 KFLRLLQRFGQSQDNILAVKVLYRLHLATLIRAGE-SDMKMVN-LRSDRTRAIAREQEATGI----PDLDFSIRILVLGK 87 (704)
Q Consensus 14 k~lrl~~R~G~s~ed~~VaqvL~rl~lae~~~~~~-~~~~~~~-lg~d~a~~ia~~~~~~~~----~~~~~~lrIlVVGk 87 (704)
+||.++.-.|+.| .-+|+|.+|++...... .....+. +++.... .+.....+. +.+... ..+++|.
T Consensus 101 R~Lv~ae~~gi~p-----vIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~--~s~~~~~~~~~l~~~l~~~-~svl~Gq 172 (301)
T COG1162 101 RYLVLAEAGGIEP-----VIVLNKIDLLDDEEAAVKELLREYEDIGYPVLF--VSAKNGDGLEELAELLAGK-ITVLLGQ 172 (301)
T ss_pred HHHHHHHHcCCcE-----EEEEEccccCcchHHHHHHHHHHHHhCCeeEEE--ecCcCcccHHHHHHHhcCC-eEEEECC
Confidence 6888999999988 56789999887655542 2222222 4543332 111222221 112222 6789999
Q ss_pred CCCcHHHHHHHHhCCCCcccc-------CCCCccceEEEEEeeEcCeEEEEEECCCCCCcccch--hhhhHHHHHHHHHH
Q 005287 88 TGVGKSATINSIFDQTKTETD-------AFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRN--VKRNRKIMLSVKKF 158 (704)
Q Consensus 88 TGvGKSTLINsLlG~~~a~vs-------~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~--~~~n~~il~~Ik~~ 158 (704)
+|||||||||+|.++....++ ....||+....+.+..+| .|||||||....... ...-.....++..+
T Consensus 173 SGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~l~~~~~e~l~~~F~ef~~~ 249 (301)
T COG1162 173 SGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLGLAHLEPEDLVQAFPEFAEL 249 (301)
T ss_pred CCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccCcccCCHHHHHHHhHHHHHH
Confidence 999999999999997655542 234578888888876677 899999998876522 11222334455555
Q ss_pred HhcCCCCEEEEE
Q 005287 159 IRRSPPDIVLYF 170 (704)
Q Consensus 159 ik~~~~dvVL~V 170 (704)
...|++.-|...
T Consensus 250 ~~~CkFr~C~H~ 261 (301)
T COG1162 250 ARQCKFRDCTHT 261 (301)
T ss_pred hcCCCCCCCCCC
Confidence 555554444333
No 137
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.99 E-value=6.8e-09 Score=100.39 Aligned_cols=120 Identities=18% Similarity=0.168 Sum_probs=69.8
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
.++|+++|.+|||||||+|++++....... .+..+.+.......+.+ ..+.++||||.... ...+ ..
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~---~~ 70 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERT-EATIGVDFRERTVEIDGERIKVQLWDTAGQERF-------RKSM---VQ 70 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCcc-ccceeEEEEEEEEEECCeEEEEEEEeCCChHHH-------HHhh---HH
Confidence 479999999999999999999876532111 11111122223334445 57899999996321 0111 12
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 157 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
.++ ..+|++++|.+++....-..-...+..+... ......|+|+|.||+|+..
T Consensus 71 ~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~Dl~~ 123 (170)
T cd04115 71 HYY--RNVHAVVFVYDVTNMASFHSLPSWIEECEQH-SLPNEVPRILVGNKCDLRE 123 (170)
T ss_pred Hhh--cCCCEEEEEEECCCHHHHHhHHHHHHHHHHh-cCCCCCCEEEEEECccchh
Confidence 233 2679999998776432100111222233322 2223579999999999763
No 138
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.99 E-value=8.5e-09 Score=107.25 Aligned_cols=125 Identities=22% Similarity=0.195 Sum_probs=75.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEE--------------------------------------
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVK-------------------------------------- 121 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~-------------------------------------- 121 (704)
..|+|+|++|+||||++|+|+|......+. ..+|+.+..+.
T Consensus 27 p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~-g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~~ 105 (240)
T smart00053 27 PQIAVVGGQSAGKSSVLENFVGRDFLPRGS-GIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVTG 105 (240)
T ss_pred CeEEEEcCCCccHHHHHHHHhCCCccccCC-CcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhcC
Confidence 479999999999999999999975333221 11222111110
Q ss_pred -----------eeE---cCeEEEEEECCCCCCcccch--hhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCc-HH
Q 005287 122 -----------GSV---NGIKVTFIDTPGFLPSCVRN--VKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSD-FP 184 (704)
Q Consensus 122 -----------~~~---~G~~v~LIDTPGl~d~~~~~--~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D-~~ 184 (704)
.++ ....++||||||+......+ ......+.+.+..+++. ..+++|+|++....-. ..+ ..
T Consensus 106 ~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~-~~~IIL~Vvda~~d~~-~~d~l~ 183 (240)
T smart00053 106 TNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISK-EECLILAVTPANVDLA-NSDALK 183 (240)
T ss_pred CCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhC-ccCeEEEEEECCCCCC-chhHHH
Confidence 011 11468999999997542111 12223444556677753 3468888876543211 123 35
Q ss_pred HHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 185 LLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 185 lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
+++.+... ++++|+|+||+|...
T Consensus 184 ia~~ld~~-----~~rti~ViTK~D~~~ 206 (240)
T smart00053 184 LAKEVDPQ-----GERTIGVITKLDLMD 206 (240)
T ss_pred HHHHHHHc-----CCcEEEEEECCCCCC
Confidence 55555443 689999999999884
No 139
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.98 E-value=4.1e-09 Score=101.56 Aligned_cols=118 Identities=18% Similarity=0.158 Sum_probs=70.2
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
.++|+++|.+||||||++|++.+..... ...+++.........+++ ..+.++||||..... ...+
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------~~~~--- 67 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIE--SYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFT--------AMRE--- 67 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCc--ccCCcchheEEEEEEECCEEEEEEEEeCCCcccch--------hhhH---
Confidence 3689999999999999999999766322 223333322222223333 577899999975431 1111
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 157 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
.+++ ..+.+++|.+++....-.........+.+.+. ....|+++|.||.|...
T Consensus 68 ~~~~--~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~D~~~ 120 (168)
T cd04177 68 LYIK--SGQGFLLVYSVTSEASLNELGELREQVLRIKD-SDNVPMVLVGNKADLED 120 (168)
T ss_pred HHHh--hCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCCEEEEEEChhccc
Confidence 2222 46888888776543210011223333433322 23579999999999863
No 140
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.98 E-value=5e-09 Score=100.70 Aligned_cols=120 Identities=18% Similarity=0.151 Sum_probs=69.5
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 155 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~I 155 (704)
..++|+++|.+|||||||+|++++...... ..+..+.+........++ ..+.|+||||-... ..+ .
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~--------~~~---~ 71 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQ-LFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERF--------RSL---R 71 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcC-cCCceeeEEEEEEEEECCeEEEEEEEeCCChHHH--------HHh---H
Confidence 458999999999999999999997653222 111112222222333444 46678999995321 111 1
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc--cccccEEEEEEccCCC
Q 005287 156 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSST 211 (704)
Q Consensus 156 k~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~--~~~k~vIVVLTK~D~l 211 (704)
..+++ .+|++++|.+++....-..-......+...... ....|+++|.||+|+.
T Consensus 72 ~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 72 TPFYR--GSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred HHHhc--CCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 22332 679999987776432100111233333333221 1246999999999975
No 141
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.98 E-value=4.4e-09 Score=98.26 Aligned_cols=100 Identities=19% Similarity=0.228 Sum_probs=62.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHh
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 160 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik 160 (704)
+|+++|.+|||||||+|++.+.... . ..|.. ..+.+ .+|||||.... .......+...+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~----~-~~t~~-----~~~~~---~~iDt~G~~~~-------~~~~~~~~~~~~- 60 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL----Y-KKTQA-----VEYND---GAIDTPGEYVE-------NRRLYSALIVTA- 60 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc----c-cccee-----EEEcC---eeecCchhhhh-------hHHHHHHHHHHh-
Confidence 7999999999999999999987642 1 11221 12222 68999997321 112222232233
Q ss_pred cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 161 RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 161 ~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
..+|++++|.+++.... ..+..++ ..++ +|+|+|+||+|+.
T Consensus 61 -~~ad~vilv~d~~~~~s-~~~~~~~----~~~~----~p~ilv~NK~Dl~ 101 (142)
T TIGR02528 61 -ADADVIALVQSATDPES-RFPPGFA----SIFV----KPVIGLVTKIDLA 101 (142)
T ss_pred -hcCCEEEEEecCCCCCc-CCChhHH----Hhcc----CCeEEEEEeeccC
Confidence 37899999987754432 1222222 2222 4999999999976
No 142
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.98 E-value=4.3e-09 Score=101.36 Aligned_cols=113 Identities=23% Similarity=0.287 Sum_probs=68.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeE--cCeEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSV--NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~--~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
++|+++|.+|||||||+|++++...... . +.|.......... ...++.++||||..... .. ...
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~----~~~ 66 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPEN--V-PRVLPEITIPADVTPERVPTTIVDTSSRPQDR-------AN----LAA 66 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcc--C-CCcccceEeeeeecCCeEEEEEEeCCCchhhh-------HH----Hhh
Confidence 4899999999999999999998654322 2 2222111122222 44678999999985321 11 122
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCc--HHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSD--FPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D--~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
++ ..+|++++|++++.... ... ...+..+... . ...|+++|.||+|+.+
T Consensus 67 ~~--~~ad~~ilv~d~~~~~s-~~~~~~~~~~~i~~~-~--~~~pviiv~nK~Dl~~ 117 (166)
T cd01893 67 EI--RKANVICLVYSVDRPST-LERIRTKWLPLIRRL-G--VKVPIILVGNKSDLRD 117 (166)
T ss_pred hc--ccCCEEEEEEECCCHHH-HHHHHHHHHHHHHHh-C--CCCCEEEEEEchhccc
Confidence 33 36799999977654321 111 1123333332 2 2579999999999864
No 143
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.97 E-value=7.8e-09 Score=99.47 Aligned_cols=112 Identities=11% Similarity=0.078 Sum_probs=68.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 159 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~i 159 (704)
++|+++|.+|||||||++++....... ..+++ ............++.++||||.... ...+ ..++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~---~~pt~-g~~~~~~~~~~~~~~l~D~~G~~~~--------~~~~---~~~~ 65 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVT---TIPTI-GFNVETVEYKNISFTVWDVGGQDKI--------RPLW---RHYF 65 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcc---cCCCC-CcceEEEEECCEEEEEEECCCCHhH--------HHHH---HHHh
Confidence 489999999999999999996543321 22322 2222233456789999999998422 1122 2233
Q ss_pred hcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccc--ccccEEEEEEccCCC
Q 005287 160 RRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA--IWFNTILVMTHSSST 211 (704)
Q Consensus 160 k~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~--~~k~vIVVLTK~D~l 211 (704)
+ .+|+++||.+.+.... -....+.+.+..... ...|+++|.||.|+.
T Consensus 66 ~--~ad~~i~v~D~~~~~s---~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 114 (159)
T cd04150 66 Q--NTQGLIFVVDSNDRER---IGEAREELQRMLNEDELRDAVLLVFANKQDLP 114 (159)
T ss_pred c--CCCEEEEEEeCCCHHH---HHHHHHHHHHHHhcHHhcCCCEEEEEECCCCC
Confidence 3 6799999987754321 112233333332211 137999999999975
No 144
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=98.97 E-value=9e-09 Score=101.65 Aligned_cols=113 Identities=12% Similarity=0.084 Sum_probs=70.6
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHH
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 158 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ 158 (704)
.++|+++|.+|||||||++.+....... ..+ |...........+..+.++||||.... .... ..+
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~---~~~-T~~~~~~~~~~~~~~~~l~D~~G~~~~--------~~~~---~~~ 81 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVT---TIP-TIGFNVETVEYKNLKFTMWDVGGQDKL--------RPLW---RHY 81 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc---cCC-ccccceEEEEECCEEEEEEECCCCHhH--------HHHH---HHH
Confidence 5899999999999999999996543321 222 222222334457889999999997321 1111 223
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccc--ccccEEEEEEccCCC
Q 005287 159 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA--IWFNTILVMTHSSST 211 (704)
Q Consensus 159 ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~--~~k~vIVVLTK~D~l 211 (704)
++ .+|+++||++++.... -....+.+.+.+... ...|+++|.||.|+.
T Consensus 82 ~~--~ad~iI~v~D~t~~~s---~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~ 131 (182)
T PTZ00133 82 YQ--NTNGLIFVVDSNDRER---IGDAREELERMLSEDELRDAVLLVFANKQDLP 131 (182)
T ss_pred hc--CCCEEEEEEeCCCHHH---HHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCC
Confidence 33 6799999987654321 112233344433321 247899999999974
No 145
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.97 E-value=2.6e-09 Score=103.51 Aligned_cols=113 Identities=12% Similarity=0.068 Sum_probs=67.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccc--eEEEEEee--EcCeEEEEEECCCCCCcccchhhhhHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATD--CIREVKGS--VNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSV 155 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~--~~~~~~~~--~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~I 155 (704)
++|+++|.+|||||||+|+++....... . ..|. +....... .....+.++||||...... ...
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~--~-~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~~-- 67 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKK--Y-VATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGG--------LRD-- 67 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC--C-CCceeeEEEEEEEEECCEEEEEEEEECCCChhhcc--------ccH--
Confidence 4899999999999999999986542211 1 1222 22222222 2346789999999754311 111
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 156 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 156 k~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
.++ ..+|++++|.+++....-..-...++.+.+..+ ..|+++|.||+|+.
T Consensus 68 -~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~ 117 (166)
T cd00877 68 -GYY--IGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIK 117 (166)
T ss_pred -HHh--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhcc
Confidence 122 267999999877643210011223444444432 58999999999975
No 146
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.97 E-value=4.4e-09 Score=104.88 Aligned_cols=116 Identities=19% Similarity=0.185 Sum_probs=70.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHHHHH
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 158 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ 158 (704)
+|+++|.+|||||||+|++++..... ...+++.........+.+ ..+.++||||..... .+.. .+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~--------~~~~---~~ 67 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEP--KYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFP--------AMRK---LS 67 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc--cCCCchhhheeEEEEECCEEEEEEEEECCCchhhh--------HHHH---HH
Confidence 58999999999999999999865332 233444333333444556 578899999975431 1111 12
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 159 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 159 ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
+ ..+|++++|+++.....-.....++..+.+... ....|+|+|+||+|+..
T Consensus 68 ~--~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~ 118 (198)
T cd04147 68 I--QNSDAFALVYAVDDPESFEEVERLREEILEVKE-DKFVPIVVVGNKADSLE 118 (198)
T ss_pred h--hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEcccccc
Confidence 2 267999999876543210011122233333322 23589999999999864
No 147
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.96 E-value=5.5e-09 Score=109.48 Aligned_cols=112 Identities=17% Similarity=0.221 Sum_probs=70.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCccc--cCC-C--------------CccceEEEEEeeEcCeEEEEEECCCCCCcccc
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTET--DAF-Q--------------PATDCIREVKGSVNGIKVTFIDTPGFLPSCVR 143 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~v--s~~-~--------------~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~ 143 (704)
+|+++|.+|+|||||+|+|++...... +.. . ..|.........+.+..+.||||||..+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f--- 77 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADF--- 77 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHH---
Confidence 589999999999999999986432211 111 1 12223334455678899999999998532
Q ss_pred hhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 144 NVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 144 ~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
......++. .+|++++|++.+.... .....+++.+... ..|.++|+||+|..
T Consensus 78 --------~~~~~~~l~--~aD~~i~Vvd~~~g~~-~~~~~~~~~~~~~-----~~p~iivvNK~D~~ 129 (268)
T cd04170 78 --------VGETRAALR--AADAALVVVSAQSGVE-VGTEKLWEFADEA-----GIPRIIFINKMDRE 129 (268)
T ss_pred --------HHHHHHHHH--HCCEEEEEEeCCCCCC-HHHHHHHHHHHHc-----CCCEEEEEECCccC
Confidence 112223343 5699999987654322 1223344443322 47999999999976
No 148
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.96 E-value=8.7e-09 Score=99.95 Aligned_cols=117 Identities=20% Similarity=0.172 Sum_probs=67.2
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCc-cceEEEEEeeE------------cCeEEEEEECCCCCCcccchh
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPA-TDCIREVKGSV------------NGIKVTFIDTPGFLPSCVRNV 145 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~t-T~~~~~~~~~~------------~G~~v~LIDTPGl~d~~~~~~ 145 (704)
.++|+++|.+|||||||+|.+.+...... ..++ +.+.......+ ....+.|+||||....
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----- 76 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPK--FITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERF----- 76 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCcc--CCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHH-----
Confidence 48999999999999999999987643211 1111 11221111111 2367899999995211
Q ss_pred hhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCc-HHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 146 KRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSD-FPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 146 ~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D-~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
... ...+++ .+|++++|.+++.... ..+ ...+..+.... .....|+++|.||+|+..
T Consensus 77 ---~~~---~~~~~~--~~~~~i~v~d~~~~~s-~~~~~~~~~~i~~~~-~~~~~piiiv~nK~Dl~~ 134 (180)
T cd04127 77 ---RSL---TTAFFR--DAMGFLLIFDLTNEQS-FLNVRNWMSQLQTHA-YCENPDIVLCGNKADLED 134 (180)
T ss_pred ---HHH---HHHHhC--CCCEEEEEEECCCHHH-HHHHHHHHHHHHHhc-CCCCCcEEEEEeCccchh
Confidence 111 222332 6799999987754321 111 12223333221 112468999999999863
No 149
>PTZ00369 Ras-like protein; Provisional
Probab=98.96 E-value=5.3e-09 Score=103.44 Aligned_cols=118 Identities=16% Similarity=0.137 Sum_probs=70.3
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 155 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~I 155 (704)
..++|+|+|.+|||||||++++++...... ..+++.........+++ ..+.++||||..+.. .+..
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~l~~-- 71 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDE--YDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYS--------AMRD-- 71 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcC--cCCchhhEEEEEEEECCEEEEEEEEeCCCCccch--------hhHH--
Confidence 358999999999999999999998654322 22333222222233344 457789999985431 1211
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 156 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 156 k~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
.+++ ..|++++|.+++....-..-......+.+.. .....|+++|.||+|+.
T Consensus 72 -~~~~--~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~-~~~~~piiiv~nK~Dl~ 123 (189)
T PTZ00369 72 -QYMR--TGQGFLCVYSITSRSSFEEIASFREQILRVK-DKDRVPMILVGNKCDLD 123 (189)
T ss_pred -HHhh--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECcccc
Confidence 2332 5799999977654321001112333333322 12246899999999964
No 150
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.96 E-value=5.7e-09 Score=102.17 Aligned_cols=114 Identities=16% Similarity=0.120 Sum_probs=66.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEc---CeEEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVN---GIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~---G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
++|+|+|.+|||||||+|++++...... ..+++........... ...+.++||||.... .... .
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~--~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~--------~~~~---~ 67 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEE--YVPTVFENYVTNIQGPNGKIIELALWDTAGQEEY--------DRLR---P 67 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCC--CCCeeeeeeEEEEEecCCcEEEEEEEECCCchhH--------HHHH---H
Confidence 5899999999999999999998763321 2222221111112222 346899999996321 1111 1
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcH--HHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 157 KFIRRSPPDIVLYFERLDLISMGFSDF--PLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~t~~~~D~--~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
.++ ..+|++++|.+++.... ..+. ..+..+.. + ....|+|+|.||+|+..
T Consensus 68 ~~~--~~ad~ii~v~d~~~~~s-~~~~~~~~~~~~~~-~--~~~~piilv~nK~Dl~~ 119 (187)
T cd04132 68 LSY--PDVDVLLICYAVDNPTS-LDNVEDKWFPEVNH-F--CPGTPIMLVGLKTDLRK 119 (187)
T ss_pred HhC--CCCCEEEEEEECCCHHH-HHHHHHHHHHHHHH-h--CCCCCEEEEEeChhhhh
Confidence 122 36899999987764321 1111 12222222 1 12479999999999763
No 151
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.95 E-value=1.2e-09 Score=108.01 Aligned_cols=58 Identities=34% Similarity=0.439 Sum_probs=51.2
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCC
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGF 137 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl 137 (704)
...++|+++|.||||||||||+|+|...+.++..+++|+..+.+.. +..+.++||||+
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~---~~~~~l~DtPGi 172 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL---DKKVKLLDSPGI 172 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe---CCCEEEEECcCC
Confidence 4468999999999999999999999999999999999998877664 356899999996
No 152
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=98.95 E-value=8.5e-09 Score=104.03 Aligned_cols=116 Identities=10% Similarity=0.145 Sum_probs=69.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEee--EcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHH
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGS--VNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 158 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~--~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ 158 (704)
+|+++|.+|||||||+|.|.+.....+ .++++.....+... ..+..+.||||||.... ......+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t--~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~-----------~~~~~~~ 68 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRST--VTSIEPNVATFILNSEGKGKKFRLVDVPGHPKL-----------RDKLLET 68 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCc--cCcEeecceEEEeecCCCCceEEEEECCCCHHH-----------HHHHHHH
Confidence 689999999999999999998753322 12222222221111 23678999999997532 1112233
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhc----ccccccEEEEEEccCCCC
Q 005287 159 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFG----TAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 159 ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG----~~~~k~vIVVLTK~D~l~ 212 (704)
++. .+++++||++...... ....+...+...+. .....|+++|.||.|+..
T Consensus 69 ~~~-~~~~vV~VvD~~~~~~--~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 69 LKN-SAKGIVFVVDSATFQK--NLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred Hhc-cCCEEEEEEECccchh--HHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 331 1489999977765421 12223333333221 113589999999999874
No 153
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=98.95 E-value=1.2e-08 Score=99.78 Aligned_cols=113 Identities=11% Similarity=0.075 Sum_probs=70.5
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHH
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 158 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ 158 (704)
.++|+++|.+|||||||++.+...... ...++ ...........+..+.++||||.... ...+ ..+
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~---~~~~t-~~~~~~~~~~~~~~l~l~D~~G~~~~--------~~~~---~~~ 77 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESV---TTIPT-IGFNVETVTYKNISFTVWDVGGQDKI--------RPLW---RHY 77 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC---CcCCc-cccceEEEEECCEEEEEEECCCChhh--------HHHH---HHH
Confidence 589999999999999999999643321 12232 22222233457789999999997432 1222 233
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccc--ccccEEEEEEccCCC
Q 005287 159 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA--IWFNTILVMTHSSST 211 (704)
Q Consensus 159 ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~--~~k~vIVVLTK~D~l 211 (704)
++ .+|+++||++++.... -....+.+.+.+... ...|+++|.||.|+.
T Consensus 78 ~~--~ad~ii~v~D~t~~~s---~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~ 127 (175)
T smart00177 78 YT--NTQGLIFVVDSNDRDR---IDEAREELHRMLNEDELRDAVILVFANKQDLP 127 (175)
T ss_pred hC--CCCEEEEEEECCCHHH---HHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcc
Confidence 43 6799999987654321 112333444433221 236899999999974
No 154
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.95 E-value=5.6e-09 Score=104.24 Aligned_cols=116 Identities=12% Similarity=0.134 Sum_probs=68.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCcc-ceEEEEEeeEc---CeEEEEEECCCCCCcccchhhhhHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPAT-DCIREVKGSVN---GIKVTFIDTPGFLPSCVRNVKRNRKIMLSV 155 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT-~~~~~~~~~~~---G~~v~LIDTPGl~d~~~~~~~~n~~il~~I 155 (704)
++|+|+|.+|||||||+|.+++...... ..++. .+.......+. ...+.++||||.... ..+ .
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~--~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~--------~~~---~ 67 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQH--YKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERF--------GGM---T 67 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCceeEEEEEEEEEECCCCEEEEEEEECCCchhh--------hhh---H
Confidence 5899999999999999999998653222 12221 12222222333 356889999997322 111 1
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCc-HHHHHHHHHHhc--ccccccEEEEEEccCCC
Q 005287 156 KKFIRRSPPDIVLYFERLDLISMGFSD-FPLLKLMTEVFG--TAIWFNTILVMTHSSST 211 (704)
Q Consensus 156 k~~ik~~~~dvVL~Vi~ld~~t~~~~D-~~lLk~L~~~fG--~~~~k~vIVVLTK~D~l 211 (704)
..+++ .+|++++|.+++.... ... ...+..+..... .....|+++|.||+|+.
T Consensus 68 ~~~~~--~a~~~ilv~D~t~~~s-~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~ 123 (201)
T cd04107 68 RVYYR--GAVGAIIVFDVTRPST-FEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK 123 (201)
T ss_pred HHHhC--CCCEEEEEEECCCHHH-HHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc
Confidence 22333 6799999987654321 011 112233333221 12357999999999986
No 155
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.95 E-value=5e-09 Score=94.70 Aligned_cols=115 Identities=16% Similarity=0.148 Sum_probs=67.0
Q ss_pred EEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeE--cCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhc
Q 005287 84 VLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSV--NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRR 161 (704)
Q Consensus 84 VVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~--~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~ 161 (704)
|+|.+|+|||||+|+|++...... ...++........... .+..+.++||||...... .. ..++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~---~~~~-- 66 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPE-EYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRS--------LR---RLYY-- 66 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCc-ccccchhheeeEEEEECCEEEEEEEEecCChHHHHh--------HH---HHHh--
Confidence 589999999999999999876311 1112222222222222 367899999999864311 11 2223
Q ss_pred CCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCCC
Q 005287 162 SPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 213 (704)
Q Consensus 162 ~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~p 213 (704)
..+|++++|+++..... ..+.................|+++|+||+|...+
T Consensus 67 ~~~~~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~ 117 (157)
T cd00882 67 RGADGIILVYDVTDRES-FENVKEWLLLILINKEGENIPIILVGNKIDLPEE 117 (157)
T ss_pred cCCCEEEEEEECcCHHH-HHHHHHHHHHHHHhhccCCCcEEEEEeccccccc
Confidence 26799999987764321 0111111011111223346899999999998743
No 156
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.95 E-value=6.3e-09 Score=107.78 Aligned_cols=112 Identities=17% Similarity=0.139 Sum_probs=71.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCccc--cCC---------------CCccceEEEEEeeEcCeEEEEEECCCCCCcccc
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTET--DAF---------------QPATDCIREVKGSVNGIKVTFIDTPGFLPSCVR 143 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~v--s~~---------------~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~ 143 (704)
+|+++|++|+|||||+|+|+....... +.. .+.|.........+.+.++.+|||||..+..
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~-- 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFI-- 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchH--
Confidence 589999999999999999986533221 100 1122234445567789999999999996531
Q ss_pred hhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 144 NVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 144 ~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
. ....+++ .+|++++|++....-. .....+++.+.+. ..|.++++||+|..
T Consensus 79 -----~----~~~~~l~--~aD~~IlVvd~~~g~~-~~~~~~~~~~~~~-----~~P~iivvNK~D~~ 129 (237)
T cd04168 79 -----A----EVERSLS--VLDGAILVISAVEGVQ-AQTRILWRLLRKL-----NIPTIIFVNKIDRA 129 (237)
T ss_pred -----H----HHHHHHH--HhCeEEEEEeCCCCCC-HHHHHHHHHHHHc-----CCCEEEEEECcccc
Confidence 1 1223343 5689999976543211 1233344444332 47999999999976
No 157
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.95 E-value=3.7e-09 Score=116.27 Aligned_cols=130 Identities=16% Similarity=0.125 Sum_probs=85.6
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCC----CCc-----------cccCCCC---ccceEEEEE---eeE--c---CeEEE
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQ----TKT-----------ETDAFQP---ATDCIREVK---GSV--N---GIKVT 130 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~----~~a-----------~vs~~~~---tT~~~~~~~---~~~--~---G~~v~ 130 (704)
+..+.|.|+|+.++|||||||++.+. +.. .+++.++ +|+++..+. .++ . ..+++
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 34799999999999999999999998 666 5667777 788776522 222 1 25899
Q ss_pred EEECCCCCCcccchhhhhHH--H------------H--HH--HHHHHhcCCCCEEEEEE-ecc--C---ccCCCCcHHHH
Q 005287 131 FIDTPGFLPSCVRNVKRNRK--I------------M--LS--VKKFIRRSPPDIVLYFE-RLD--L---ISMGFSDFPLL 186 (704)
Q Consensus 131 LIDTPGl~d~~~~~~~~n~~--i------------l--~~--Ik~~ik~~~~dvVL~Vi-~ld--~---~t~~~~D~~lL 186 (704)
+|||+|+.+....+..+..+ + . .+ .++.+. ...++.|+|. +.+ . ......+..++
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~-dhstIgivVtTDgsi~dI~Re~y~~aEe~~i 173 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQ-EHSTIGVVVTTDGTITDIPREDYVEAEERVI 173 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHH-hcCcEEEEEEcCCCccccccccchHHHHHHH
Confidence 99999998765543222222 0 0 00 123332 2568888875 321 1 11112356777
Q ss_pred HHHHHHhcccccccEEEEEEccCCCC
Q 005287 187 KLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 187 k~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
+.|.+. .+|+|+|+|+.|-..
T Consensus 174 ~eLk~~-----~kPfiivlN~~dp~~ 194 (492)
T TIGR02836 174 EELKEL-----NKPFIILLNSTHPYH 194 (492)
T ss_pred HHHHhc-----CCCEEEEEECcCCCC
Confidence 777776 699999999999553
No 158
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.94 E-value=7e-09 Score=100.75 Aligned_cols=117 Identities=15% Similarity=0.098 Sum_probs=68.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
.+|+|+|.+|||||||+|++++.... ....+++...........+ ..+.++||||..+. ..... .
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------~~~~~---~ 68 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFV--ESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEY--------SILPQ---K 68 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc--cccCcchhhhEEEEEEECCEEEEEEEEECCChHhh--------HHHHH---H
Confidence 58999999999999999999976532 2233444332222233343 46789999997432 11111 1
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
+.. ..|++++|.+.+....-.........+.+..+ ....|+|+|.||+|+..
T Consensus 69 ~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~ 120 (180)
T cd04137 69 YSI--GIHGYILVYSVTSRKSFEVVKVIYDKILDMLG-KESVPIVLVGNKSDLHT 120 (180)
T ss_pred HHh--hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEchhhhh
Confidence 222 56888888766543210011222333333322 22469999999999763
No 159
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.93 E-value=1.4e-08 Score=101.44 Aligned_cols=116 Identities=19% Similarity=0.226 Sum_probs=68.6
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCcc-ceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPAT-DCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT-~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
..++|+|+|.+|||||||+|++++...... ..++. .+.........| ..+.|+||||-... ...
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~--------~~~--- 71 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGS--YITTIGVDFKIRTVEINGERVKLQIWDTAGQERF--------RTI--- 71 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCC--cCccccceeEEEEEEECCEEEEEEEEeCCCchhH--------HHH---
Confidence 358999999999999999999998763221 11221 122222333344 46789999996321 111
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 155 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 155 Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
...+++ .++++++|.++..... -..+..++..........|+++|.||+|+.
T Consensus 72 ~~~~~~--~a~~iilv~D~~~~~s---~~~~~~~~~~i~~~~~~~piivVgNK~Dl~ 123 (199)
T cd04110 72 TSTYYR--GTHGVIVVYDVTNGES---FVNVKRWLQEIEQNCDDVCKVLVGNKNDDP 123 (199)
T ss_pred HHHHhC--CCcEEEEEEECCCHHH---HHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 122332 5789999977654321 112222333222222246899999999976
No 160
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.93 E-value=4.2e-09 Score=115.29 Aligned_cols=88 Identities=18% Similarity=0.199 Sum_probs=65.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC-----------------eEEEEEECCCCCCccc
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG-----------------IKVTFIDTPGFLPSCV 142 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G-----------------~~v~LIDTPGl~d~~~ 142 (704)
++|++||.||||||||+|+|++.. +.++.++.+|.++......+.+ .++.++||||+.....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence 789999999999999999999988 6778888999887765555443 2589999999987543
Q ss_pred chhhhhHHHHHHHHHHHhcCCCCEEEEEEecc
Q 005287 143 RNVKRNRKIMLSVKKFIRRSPPDIVLYFERLD 174 (704)
Q Consensus 143 ~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld 174 (704)
.+ +.+...+...++ .+|++++|++..
T Consensus 82 ~g----~glg~~fL~~i~--~aD~li~VVd~f 107 (364)
T PRK09601 82 KG----EGLGNQFLANIR--EVDAIVHVVRCF 107 (364)
T ss_pred hH----HHHHHHHHHHHH--hCCEEEEEEeCC
Confidence 22 233333333443 679999997753
No 161
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.93 E-value=3e-09 Score=112.65 Aligned_cols=85 Identities=20% Similarity=0.211 Sum_probs=63.5
Q ss_pred EEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCe-----------------EEEEEECCCCCCcccch
Q 005287 82 ILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI-----------------KVTFIDTPGFLPSCVRN 144 (704)
Q Consensus 82 IlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~-----------------~v~LIDTPGl~d~~~~~ 144 (704)
|++||.||||||||+|+|++... .++.++.+|.+.......+.+. ++.++||||+......+
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~ 79 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKG 79 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchh
Confidence 57999999999999999999986 7778888998877766555443 58999999998764332
Q ss_pred hhhhHHHHHHHHHHHhcCCCCEEEEEEec
Q 005287 145 VKRNRKIMLSVKKFIRRSPPDIVLYFERL 173 (704)
Q Consensus 145 ~~~n~~il~~Ik~~ik~~~~dvVL~Vi~l 173 (704)
..+...+...++ .+|++++|++.
T Consensus 80 ----~glg~~fL~~i~--~~D~li~VV~~ 102 (274)
T cd01900 80 ----EGLGNKFLSHIR--EVDAIAHVVRC 102 (274)
T ss_pred ----hHHHHHHHHHHH--hCCEEEEEEeC
Confidence 233333333443 67999999765
No 162
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.93 E-value=1.8e-09 Score=115.64 Aligned_cols=126 Identities=14% Similarity=0.170 Sum_probs=87.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeE-cCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHH
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSV-NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 159 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~-~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~i 159 (704)
-|.+||-||+|||||||++...+ ..+.+++-||..+....... .+..+++-|.||+.+....+.-...+.++.|.+|
T Consensus 161 DVGLVG~PNaGKSTlls~vS~Ak-PKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt- 238 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAK-PKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT- 238 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcC-CcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhh-
Confidence 36699999999999999999866 44556788888777665554 5667999999999998766655666666666543
Q ss_pred hcCCCCEEEEEEeccCccCC--CCcHH-HHHHHHHHhcccccccEEEEEEccCCCCC
Q 005287 160 RRSPPDIVLYFERLDLISMG--FSDFP-LLKLMTEVFGTAIWFNTILVMTHSSSTLP 213 (704)
Q Consensus 160 k~~~~dvVL~Vi~ld~~t~~--~~D~~-lLk~L~~~fG~~~~k~vIVVLTK~D~l~p 213 (704)
-++++|++++..... ..+.. +..+|...-..-..++.+||+||+|...+
T Consensus 239 -----~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~ 290 (369)
T COG0536 239 -----RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLD 290 (369)
T ss_pred -----heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcC
Confidence 588888877654321 12333 33333333222345899999999996643
No 163
>PTZ00258 GTP-binding protein; Provisional
Probab=98.93 E-value=4.6e-09 Score=116.04 Aligned_cols=93 Identities=18% Similarity=0.205 Sum_probs=68.2
Q ss_pred CCCCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEc-----------------CeEEEEEECCCC
Q 005287 75 DLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVN-----------------GIKVTFIDTPGF 137 (704)
Q Consensus 75 ~~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~-----------------G~~v~LIDTPGl 137 (704)
.....++|+|||.||||||||+|+|++.. ..++.++.+|.++......+. +.++.++||||+
T Consensus 17 ~~~~~~kvgIVG~PNvGKSTLfnaLt~~~-~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGL 95 (390)
T PTZ00258 17 RPGNNLKMGIVGLPNVGKSTTFNALCKQQ-VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGL 95 (390)
T ss_pred cCCCCcEEEEECCCCCChHHHHHHHhcCc-ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCc
Confidence 34567899999999999999999998877 577888899988777665544 235899999999
Q ss_pred CCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEecc
Q 005287 138 LPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLD 174 (704)
Q Consensus 138 ~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld 174 (704)
....... ..+...+...++ .+|++++|++..
T Consensus 96 v~ga~~g----~gLg~~fL~~Ir--~aD~il~VVd~f 126 (390)
T PTZ00258 96 VKGASEG----EGLGNAFLSHIR--AVDGIYHVVRAF 126 (390)
T ss_pred CcCCcch----hHHHHHHHHHHH--HCCEEEEEEeCC
Confidence 8654322 222233333443 579999997753
No 164
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.93 E-value=4.9e-09 Score=101.56 Aligned_cols=102 Identities=20% Similarity=0.251 Sum_probs=62.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHh
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 160 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik 160 (704)
+|+++|.+|||||||+|+|.|..... ..|..+ .+.+. .+|||||..... ......+...+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~-----~~~~~v-----~~~~~--~~iDtpG~~~~~-------~~~~~~~~~~~- 62 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA-----RKTQAV-----EFNDK--GDIDTPGEYFSH-------PRWYHALITTL- 62 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC-----ccceEE-----EECCC--CcccCCccccCC-------HHHHHHHHHHH-
Confidence 69999999999999999999875321 122211 11222 269999986442 12222222223
Q ss_pred cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 161 RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 161 ~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
..+|++++|++.+.... .... .+.+. + ..+|+++++||+|+.
T Consensus 63 -~~ad~il~v~d~~~~~s-~~~~----~~~~~-~--~~~~ii~v~nK~Dl~ 104 (158)
T PRK15467 63 -QDVDMLIYVHGANDPES-RLPA----GLLDI-G--VSKRQIAVISKTDMP 104 (158)
T ss_pred -hcCCEEEEEEeCCCccc-ccCH----HHHhc-c--CCCCeEEEEEccccC
Confidence 27799999987764322 1222 22221 1 236899999999974
No 165
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.92 E-value=3.5e-09 Score=112.30 Aligned_cols=125 Identities=15% Similarity=0.136 Sum_probs=84.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCe-EEEEEECCCCCCcccchhhhhHHHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI-KVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 158 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~-~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ 158 (704)
..|-+||-||+|||||+|+|...+. .+..++-||-.+.......++. +++|.|.||+......+.-.....++ +
T Consensus 197 advGLVG~PNAGKSTLL~als~AKp-kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLr----H 271 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKP-KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLR----H 271 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCC-cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHH----H
Confidence 3678999999999999999998775 6777888888877665555544 59999999999876544333344444 4
Q ss_pred HhcCCCCEEEEEEeccCccCCC--CcHHHHHHHHHHhcc-cccccEEEEEEccCCC
Q 005287 159 IRRSPPDIVLYFERLDLISMGF--SDFPLLKLMTEVFGT-AIWFNTILVMTHSSST 211 (704)
Q Consensus 159 ik~~~~dvVL~Vi~ld~~t~~~--~D~~lLk~L~~~fG~-~~~k~vIVVLTK~D~l 211 (704)
++ +...++||+++....... ++.++|..=-+.+.+ -..+|.++|.||+|..
T Consensus 272 iE--R~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ 325 (366)
T KOG1489|consen 272 IE--RCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLP 325 (366)
T ss_pred HH--hhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCch
Confidence 43 447999998887652111 122222221222222 2357899999999975
No 166
>PLN03127 Elongation factor Tu; Provisional
Probab=98.92 E-value=9.1e-09 Score=115.92 Aligned_cols=118 Identities=11% Similarity=0.010 Sum_probs=80.3
Q ss_pred CCCCCeEEEEEeCCCCcHHHHHHHHhC------CCCcccc---------CCCCccceEEEEEeeEcCeEEEEEECCCCCC
Q 005287 75 DLDFSIRILVLGKTGVGKSATINSIFD------QTKTETD---------AFQPATDCIREVKGSVNGIKVTFIDTPGFLP 139 (704)
Q Consensus 75 ~~~~~lrIlVVGkTGvGKSTLINsLlG------~~~a~vs---------~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d 139 (704)
.....++|+++|+.++|||||+|+|.+ ....... ..++.|.++....++.++.+++||||||..+
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD 136 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc
Confidence 345679999999999999999999973 2211111 1256777877777777888999999999853
Q ss_pred cccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccccccc-EEEEEEccCCC
Q 005287 140 SCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFN-TILVMTHSSST 211 (704)
Q Consensus 140 ~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~-vIVVLTK~D~l 211 (704)
. +..+...+ ..+|++++|++.+.. ...++...+..+... ..| +|+|+||+|+.
T Consensus 137 f-----------~~~~~~g~--~~aD~allVVda~~g-~~~qt~e~l~~~~~~-----gip~iIvviNKiDlv 190 (447)
T PLN03127 137 Y-----------VKNMITGA--AQMDGGILVVSAPDG-PMPQTKEHILLARQV-----GVPSLVVFLNKVDVV 190 (447)
T ss_pred h-----------HHHHHHHH--hhCCEEEEEEECCCC-CchhHHHHHHHHHHc-----CCCeEEEEEEeeccC
Confidence 2 12222222 258999999876532 123455666665543 356 57899999986
No 167
>PLN03110 Rab GTPase; Provisional
Probab=98.91 E-value=9.4e-09 Score=104.43 Aligned_cols=118 Identities=15% Similarity=0.106 Sum_probs=70.7
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 155 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~I 155 (704)
..++|+++|.+|||||||++.+++....... .+....+.......+.+ ..+.|+||||.... .. ..
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~-~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~--------~~---~~ 78 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLES-KSTIGVEFATRTLQVEGKTVKAQIWDTAGQERY--------RA---IT 78 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCceeEEEEEEEEEECCEEEEEEEEECCCcHHH--------HH---HH
Confidence 4589999999999999999999987643321 11111222223333444 57889999996321 11 22
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 156 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 156 k~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
..+++ .++++++|.++.....-..-...+..+..... ...|+++|.||+|+.
T Consensus 79 ~~~~~--~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~piiiv~nK~Dl~ 130 (216)
T PLN03110 79 SAYYR--GAVGALLVYDITKRQTFDNVQRWLRELRDHAD--SNIVIMMAGNKSDLN 130 (216)
T ss_pred HHHhC--CCCEEEEEEECCChHHHHHHHHHHHHHHHhCC--CCCeEEEEEEChhcc
Confidence 23443 67999999876543210011123333333321 247899999999975
No 168
>PRK12735 elongation factor Tu; Reviewed
Probab=98.91 E-value=1.2e-08 Score=113.09 Aligned_cols=119 Identities=11% Similarity=0.045 Sum_probs=77.4
Q ss_pred CCCCCCeEEEEEeCCCCcHHHHHHHHhCC------CCccc---------cCCCCccceEEEEEeeEcCeEEEEEECCCCC
Q 005287 74 PDLDFSIRILVLGKTGVGKSATINSIFDQ------TKTET---------DAFQPATDCIREVKGSVNGIKVTFIDTPGFL 138 (704)
Q Consensus 74 ~~~~~~lrIlVVGkTGvGKSTLINsLlG~------~~a~v---------s~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~ 138 (704)
++....++|+++|++++|||||+|+|++. ..+.. ....+.|.++.......++.++.|+||||..
T Consensus 7 ~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~ 86 (396)
T PRK12735 7 ERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA 86 (396)
T ss_pred CCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH
Confidence 34556799999999999999999999862 11110 1134566676666666678899999999973
Q ss_pred CcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEE-EEEEccCCC
Q 005287 139 PSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTI-LVMTHSSST 211 (704)
Q Consensus 139 d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vI-VVLTK~D~l 211 (704)
++...+...+ ..+|++++|+++...- ..++...+..+... ..|.| +|+||+|+.
T Consensus 87 -----------~f~~~~~~~~--~~aD~~llVvda~~g~-~~qt~e~l~~~~~~-----gi~~iivvvNK~Dl~ 141 (396)
T PRK12735 87 -----------DYVKNMITGA--AQMDGAILVVSAADGP-MPQTREHILLARQV-----GVPYIVVFLNKCDMV 141 (396)
T ss_pred -----------HHHHHHHhhh--ccCCEEEEEEECCCCC-chhHHHHHHHHHHc-----CCCeEEEEEEecCCc
Confidence 1222333333 2679999998765421 12344455444332 35655 679999986
No 169
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.91 E-value=1.8e-08 Score=97.59 Aligned_cols=111 Identities=14% Similarity=0.178 Sum_probs=69.1
Q ss_pred EEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhc
Q 005287 82 ILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRR 161 (704)
Q Consensus 82 IlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~ 161 (704)
|+++|.+|||||||+|.+.+..... ...++. ..........+.++.++||||-... ..... .+++
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~--~~~pt~-g~~~~~i~~~~~~l~i~Dt~G~~~~--------~~~~~---~~~~- 66 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLE--SVVPTT-GFNSVAIPTQDAIMELLEIGGSQNL--------RKYWK---RYLS- 66 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcc--cccccC-CcceEEEeeCCeEEEEEECCCCcch--------hHHHH---HHHh-
Confidence 7999999999999999999864321 122221 1222334456789999999997432 11111 2333
Q ss_pred CCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 162 SPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 162 ~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
.+|+++||++.+.... -.....++.+........|+++|.||.|+.
T Consensus 67 -~ad~ii~V~D~t~~~s---~~~~~~~l~~~~~~~~~~piilv~NK~Dl~ 112 (164)
T cd04162 67 -GSQGLIFVVDSADSER---LPLARQELHQLLQHPPDLPLVVLANKQDLP 112 (164)
T ss_pred -hCCEEEEEEECCCHHH---HHHHHHHHHHHHhCCCCCcEEEEEeCcCCc
Confidence 6799999977654321 112223334433222468999999999975
No 170
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.90 E-value=1.1e-08 Score=99.83 Aligned_cols=115 Identities=15% Similarity=0.145 Sum_probs=66.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccc-eEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATD-CIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~-~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
+|+++|.+|||||||+|.+++..... ...+++. +.........| .++.|+||||.... .... ..
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~~---~~ 68 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDK--NYKATIGVDFEMERFEILGVPFSLQLWDTAGQERF--------KCIA---ST 68 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC--CCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHH--------HhhH---HH
Confidence 79999999999999999999865321 2223322 22222233344 57899999997422 1111 12
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
++ ..+|++++|.+++....-......+..+.+..... ..|+++|.||+|+.
T Consensus 69 ~~--~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~-~~~iilVgnK~Dl~ 119 (170)
T cd04108 69 YY--RGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPS-SVLLFLVGTKKDLS 119 (170)
T ss_pred Hh--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEChhcC
Confidence 23 27799999987754211001122333332221111 24689999999975
No 171
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=98.90 E-value=2.2e-08 Score=97.81 Aligned_cols=116 Identities=18% Similarity=0.221 Sum_probs=70.9
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
.++|+|+|.+|||||||++.+++...... ..+++.........+++ ..+.|+||||.... ..+..
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~--~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~l~~--- 68 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDY--HDPTIEDAYKQQARIDNEPALLDILDTAGQAEF--------TAMRD--- 68 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCC--cCCcccceEEEEEEECCEEEEEEEEeCCCchhh--------HHHhH---
Confidence 47999999999999999999997653321 22333332233344555 46789999997432 11211
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCc-HHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 157 KFIRRSPPDIVLYFERLDLISMGFSD-FPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~t~~~~D-~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
.+++ .+|++++|.+++.... ... ....+.+.+.. .....|+++|.||+|+.
T Consensus 69 ~~~~--~~d~~ilv~d~~~~~S-f~~~~~~~~~i~~~~-~~~~~piilvgNK~Dl~ 120 (172)
T cd04141 69 QYMR--CGEGFIICYSVTDRHS-FQEASEFKKLITRVR-LTEDIPLVLVGNKVDLE 120 (172)
T ss_pred HHhh--cCCEEEEEEECCchhH-HHHHHHHHHHHHHhc-CCCCCCEEEEEEChhhh
Confidence 2332 5799999987764321 111 12223333321 22347999999999975
No 172
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.90 E-value=1.9e-08 Score=106.07 Aligned_cols=113 Identities=9% Similarity=0.030 Sum_probs=70.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccc--cCC------C-------------CccceEEEEEeeEcCeEEEEEECCCCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTET--DAF------Q-------------PATDCIREVKGSVNGIKVTFIDTPGFL 138 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~v--s~~------~-------------~tT~~~~~~~~~~~G~~v~LIDTPGl~ 138 (704)
-+|+|+|++|+|||||+|+|+.....+. +.. . +.|-........+.+.++.+|||||..
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 3799999999999999999985432221 110 0 112223344567889999999999985
Q ss_pred CcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 139 PSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 139 d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
+.. .. ...+++ .+|++++|++....-. .....+++.... ...|+++++||+|..
T Consensus 83 df~-------~~----~~~~l~--~aD~~IlVvda~~g~~-~~~~~i~~~~~~-----~~~P~iivvNK~D~~ 136 (267)
T cd04169 83 DFS-------ED----TYRTLT--AVDSAVMVIDAAKGVE-PQTRKLFEVCRL-----RGIPIITFINKLDRE 136 (267)
T ss_pred HHH-------HH----HHHHHH--HCCEEEEEEECCCCcc-HHHHHHHHHHHh-----cCCCEEEEEECCccC
Confidence 431 11 223333 5699999977643211 112233333222 247899999999965
No 173
>PLN00223 ADP-ribosylation factor; Provisional
Probab=98.89 E-value=3.1e-08 Score=97.89 Aligned_cols=114 Identities=11% Similarity=0.080 Sum_probs=71.7
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
..++|+++|.+|||||||++.+....... ..+ |...........+..+.++||||-... ...+ ..
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~~---~~p-t~g~~~~~~~~~~~~~~i~D~~Gq~~~--------~~~~---~~ 80 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT---TIP-TIGFNVETVEYKNISFTVWDVGGQDKI--------RPLW---RH 80 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCcc---ccC-CcceeEEEEEECCEEEEEEECCCCHHH--------HHHH---HH
Confidence 35899999999999999999998544321 122 222222334567889999999996211 1222 22
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccc--ccccEEEEEEccCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA--IWFNTILVMTHSSST 211 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~--~~k~vIVVLTK~D~l 211 (704)
+++ .+|+++||+++..... -......+...+... ...|+++|.||.|+.
T Consensus 81 ~~~--~a~~iI~V~D~s~~~s---~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~ 131 (181)
T PLN00223 81 YFQ--NTQGLIFVVDSNDRDR---VVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
T ss_pred Hhc--cCCEEEEEEeCCcHHH---HHHHHHHHHHHhcCHhhCCCCEEEEEECCCCC
Confidence 333 6799999987654321 112334444443221 247999999999974
No 174
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.89 E-value=6e-09 Score=100.38 Aligned_cols=112 Identities=19% Similarity=0.144 Sum_probs=67.8
Q ss_pred EEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCe--EEEEEECCCCCCcccchhhhhHHHHHHHHHHH
Q 005287 82 ILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 159 (704)
Q Consensus 82 IlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~--~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~i 159 (704)
|+|+|.+|||||||+|++++...... ..+++..........++. .+.++||||..... .+.. .++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------~~~~---~~~ 67 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPED--YVPTVFENYSADVEVDGKPVELGLWDTAGQEDYD--------RLRP---LSY 67 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCC--CCCcEEeeeeEEEEECCEEEEEEEEECCCCcccc--------hhch---hhc
Confidence 68999999999999999998664322 223322222222334444 58899999975331 1111 122
Q ss_pred hcCCCCEEEEEEeccCccCCCCcH--HHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 160 RRSPPDIVLYFERLDLISMGFSDF--PLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 160 k~~~~dvVL~Vi~ld~~t~~~~D~--~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
..+|++++|.+++.... .... ..+..+.+.. ...|+|+|.||+|+..
T Consensus 68 --~~~d~~ilv~d~~~~~s-~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~ 116 (174)
T smart00174 68 --PDTDVFLICFSVDSPAS-FENVKEKWYPEVKHFC---PNTPIILVGTKLDLRE 116 (174)
T ss_pred --CCCCEEEEEEECCCHHH-HHHHHHHHHHHHHhhC---CCCCEEEEecChhhhh
Confidence 36799999987764321 1111 2333343332 2589999999999864
No 175
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.89 E-value=1.2e-08 Score=104.15 Aligned_cols=118 Identities=16% Similarity=-0.014 Sum_probs=68.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCc-cccCCCCc-cceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKT-ETDAFQPA-TDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a-~vs~~~~t-T~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
++|+++|.+|||||||+|.+++.... ........ ......+........+.++||||.... ... .
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~----------~~~---~ 67 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW----------TED---S 67 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchH----------HHh---H
Confidence 48999999999999999999765433 11111111 111222222224467899999998511 001 1
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
++. ..+|++++|.+++....-.....++..+... ......|+|+|.||+|+..
T Consensus 68 ~~~-~~ad~iilV~d~td~~S~~~~~~~~~~l~~~-~~~~~~piilV~NK~Dl~~ 120 (221)
T cd04148 68 CMQ-YQGDAFVVVYSVTDRSSFERASELRIQLRRN-RQLEDRPIILVGNKSDLAR 120 (221)
T ss_pred Hhh-cCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEEChhccc
Confidence 221 1679999998776432100112333344332 1223589999999999763
No 176
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.88 E-value=1.8e-08 Score=102.67 Aligned_cols=115 Identities=16% Similarity=0.122 Sum_probs=74.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCcc------------------------c------cCCCCccceEEEEEeeEcCeEEE
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTE------------------------T------DAFQPATDCIREVKGSVNGIKVT 130 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~------------------------v------s~~~~tT~~~~~~~~~~~G~~v~ 130 (704)
+|+++|.+|+|||||+.+|+...... + ....++|.+.....+.+.+.++.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 58999999999999999996321100 0 01235677777888888999999
Q ss_pred EEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCc------cCCCCcHHHHHHHHHHhcccccccEEEE
Q 005287 131 FIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLI------SMGFSDFPLLKLMTEVFGTAIWFNTILV 204 (704)
Q Consensus 131 LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~------t~~~~D~~lLk~L~~~fG~~~~k~vIVV 204 (704)
+|||||..+. ...+...+ ..+|++++|++.... .........+... ..++ .+|+|+|
T Consensus 81 liDtpG~~~~-----------~~~~~~~~--~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~iiiv 143 (219)
T cd01883 81 ILDAPGHRDF-----------VPNMITGA--SQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTLG---VKQLIVA 143 (219)
T ss_pred EEECCChHHH-----------HHHHHHHh--hhCCEEEEEEECCCCccccccccccchHHHHHHH-HHcC---CCeEEEE
Confidence 9999997432 11222233 257999999877542 1111223333322 2222 2689999
Q ss_pred EEccCCCC
Q 005287 205 MTHSSSTL 212 (704)
Q Consensus 205 LTK~D~l~ 212 (704)
+||+|+..
T Consensus 144 vNK~Dl~~ 151 (219)
T cd01883 144 VNKMDDVT 151 (219)
T ss_pred EEcccccc
Confidence 99999874
No 177
>PRK00007 elongation factor G; Reviewed
Probab=98.88 E-value=1.8e-08 Score=119.19 Aligned_cols=115 Identities=14% Similarity=0.060 Sum_probs=80.5
Q ss_pred CeEEEEEeCCCCcHHHHHHHHh---CCCCcc--cc------------CCCCccceEEEEEeeEcCeEEEEEECCCCCCcc
Q 005287 79 SIRILVLGKTGVGKSATINSIF---DQTKTE--TD------------AFQPATDCIREVKGSVNGIKVTFIDTPGFLPSC 141 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLl---G~~~a~--vs------------~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~ 141 (704)
-.+|+|+|++|+|||||+|+|+ |..... ++ ...+.|.+.......+.+.++.||||||..+.
T Consensus 10 Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f- 88 (693)
T PRK00007 10 YRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF- 88 (693)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH-
Confidence 3589999999999999999997 432111 11 13456777777778889999999999998432
Q ss_pred cchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 142 VRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 142 ~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
..++.+.+. .+|++++|++.... ...++..++..+.+. ..|.|+++||+|...
T Consensus 89 ----------~~ev~~al~--~~D~~vlVvda~~g-~~~qt~~~~~~~~~~-----~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 89 ----------TIEVERSLR--VLDGAVAVFDAVGG-VEPQSETVWRQADKY-----KVPRIAFVNKMDRTG 141 (693)
T ss_pred ----------HHHHHHHHH--HcCEEEEEEECCCC-cchhhHHHHHHHHHc-----CCCEEEEEECCCCCC
Confidence 112334443 45899999775432 223566677666654 478999999999873
No 178
>PRK12289 GTPase RsgA; Reviewed
Probab=98.88 E-value=8.9e-10 Score=120.41 Aligned_cols=59 Identities=27% Similarity=0.391 Sum_probs=48.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCccccCCCC-------ccceEEEEEeeEcCeEEEEEECCCCCCccc
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTETDAFQP-------ATDCIREVKGSVNGIKVTFIDTPGFLPSCV 142 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~-------tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~ 142 (704)
.++|+|+||||||||||+|++.....++..++ ||+....+....++ .|||||||.....
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~~~l 239 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQPDL 239 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCcccccc
Confidence 48999999999999999999998887766655 78888776653333 8999999987754
No 179
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.87 E-value=1.8e-08 Score=118.12 Aligned_cols=119 Identities=14% Similarity=0.025 Sum_probs=76.0
Q ss_pred CCCCeEEEEEeCCCCcHHHHHHHHhCCCCccccC----------CCC----------------------ccceEEEEEee
Q 005287 76 LDFSIRILVLGKTGVGKSATINSIFDQTKTETDA----------FQP----------------------ATDCIREVKGS 123 (704)
Q Consensus 76 ~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~----------~~~----------------------tT~~~~~~~~~ 123 (704)
....++|+++|++|+|||||+|.|+.....++.. ..+ .|.+.....+.
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 3446899999999999999999999765444311 122 33344444566
Q ss_pred EcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEE
Q 005287 124 VNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTIL 203 (704)
Q Consensus 124 ~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIV 203 (704)
.++.+++||||||..+ +...+...+ ..+|++++|++.+..- ..++...+..+.. ++ .+++|+
T Consensus 101 ~~~~~~~liDtPG~~~-----------f~~~~~~~~--~~aD~~llVvda~~g~-~~~t~e~~~~~~~-~~---~~~iiv 162 (632)
T PRK05506 101 TPKRKFIVADTPGHEQ-----------YTRNMVTGA--STADLAIILVDARKGV-LTQTRRHSFIASL-LG---IRHVVL 162 (632)
T ss_pred cCCceEEEEECCChHH-----------HHHHHHHHH--HhCCEEEEEEECCCCc-cccCHHHHHHHHH-hC---CCeEEE
Confidence 7788999999999632 111122223 2679999998765321 1233344444333 22 257899
Q ss_pred EEEccCCCC
Q 005287 204 VMTHSSSTL 212 (704)
Q Consensus 204 VLTK~D~l~ 212 (704)
|+||+|+..
T Consensus 163 vvNK~D~~~ 171 (632)
T PRK05506 163 AVNKMDLVD 171 (632)
T ss_pred EEEeccccc
Confidence 999999863
No 180
>PRK12736 elongation factor Tu; Reviewed
Probab=98.87 E-value=1.5e-08 Score=112.32 Aligned_cols=119 Identities=11% Similarity=0.013 Sum_probs=78.8
Q ss_pred CCCCCCeEEEEEeCCCCcHHHHHHHHhCCCC------cc----c-----cCCCCccceEEEEEeeEcCeEEEEEECCCCC
Q 005287 74 PDLDFSIRILVLGKTGVGKSATINSIFDQTK------TE----T-----DAFQPATDCIREVKGSVNGIKVTFIDTPGFL 138 (704)
Q Consensus 74 ~~~~~~lrIlVVGkTGvGKSTLINsLlG~~~------a~----v-----s~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~ 138 (704)
+.....++|+++|+.++|||||+++|++... +. . -...+.|.++....+..++.++.||||||..
T Consensus 7 ~~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~ 86 (394)
T PRK12736 7 DRSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA 86 (394)
T ss_pred ccCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH
Confidence 3455679999999999999999999987321 11 0 0134567777666666678899999999963
Q ss_pred CcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccccccc-EEEEEEccCCC
Q 005287 139 PSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFN-TILVMTHSSST 211 (704)
Q Consensus 139 d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~-vIVVLTK~D~l 211 (704)
+ +...+...+ ..+|++++|++.+.. ....+...+..+... ..| +|+++||+|+.
T Consensus 87 ~-----------f~~~~~~~~--~~~d~~llVvd~~~g-~~~~t~~~~~~~~~~-----g~~~~IvviNK~D~~ 141 (394)
T PRK12736 87 D-----------YVKNMITGA--AQMDGAILVVAATDG-PMPQTREHILLARQV-----GVPYLVVFLNKVDLV 141 (394)
T ss_pred H-----------HHHHHHHHH--hhCCEEEEEEECCCC-CchhHHHHHHHHHHc-----CCCEEEEEEEecCCc
Confidence 1 222222223 267999999876532 112445556555443 355 67899999986
No 181
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.87 E-value=3.1e-08 Score=95.24 Aligned_cols=116 Identities=16% Similarity=0.232 Sum_probs=68.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
++|+++|.+|||||||++.+++...... ..+....+.........+ ..+.++||||.... ... ...
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~--------~~~---~~~ 68 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSS-HISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERY--------QTI---TKQ 68 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCC-CCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhH--------Hhh---HHH
Confidence 4799999999999999999997654322 111111222223334455 46789999996322 111 122
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc-cccccEEEEEEccCCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT-AIWFNTILVMTHSSSTL 212 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~-~~~k~vIVVLTK~D~l~ 212 (704)
++ ..+|++++|.+++.... -..+..++...... ....|+++|.||.|+..
T Consensus 69 ~~--~~~~~~i~v~d~~~~~s---f~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~ 119 (161)
T cd04117 69 YY--RRAQGIFLVYDISSERS---YQHIMKWVSDVDEYAPEGVQKILIGNKADEEQ 119 (161)
T ss_pred Hh--cCCcEEEEEEECCCHHH---HHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 33 26799999988765421 11222333322111 12478999999999763
No 182
>PLN03108 Rab family protein; Provisional
Probab=98.87 E-value=2.2e-08 Score=101.20 Aligned_cols=118 Identities=16% Similarity=0.144 Sum_probs=68.8
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 155 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~I 155 (704)
..++|+|+|.+|||||||+|.|++........ +..+.+.......+.+ ..+.++||||.... ... .
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~-~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~--------~~~---~ 72 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMITIDNKPIKLQIWDTAGQESF--------RSI---T 72 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCC-CCccceEEEEEEEECCEEEEEEEEeCCCcHHH--------HHH---H
Confidence 45899999999999999999999875433321 1111122222233444 46789999996321 111 1
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 156 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 156 k~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
..+++ .+|++++|.++.....-......+..+.... ....|+++|.||+|+.
T Consensus 73 ~~~~~--~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~--~~~~piiiv~nK~Dl~ 124 (210)
T PLN03108 73 RSYYR--GAAGALLVYDITRRETFNHLASWLEDARQHA--NANMTIMLIGNKCDLA 124 (210)
T ss_pred HHHhc--cCCEEEEEEECCcHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECccCc
Confidence 22332 6799999987654321001112222232222 1247899999999976
No 183
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.87 E-value=3.6e-08 Score=109.30 Aligned_cols=120 Identities=11% Similarity=0.015 Sum_probs=78.4
Q ss_pred CCCCCCeEEEEEeCCCCcHHHHHHHHhCC------CCcccc---------CCCCccceEEEEEeeEcCeEEEEEECCCCC
Q 005287 74 PDLDFSIRILVLGKTGVGKSATINSIFDQ------TKTETD---------AFQPATDCIREVKGSVNGIKVTFIDTPGFL 138 (704)
Q Consensus 74 ~~~~~~lrIlVVGkTGvGKSTLINsLlG~------~~a~vs---------~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~ 138 (704)
+.....++|+++|..++|||||+++|++. ..+... ...+.|.+.....+...+.++.||||||..
T Consensus 7 ~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 7 ERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHA 86 (394)
T ss_pred cCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchH
Confidence 34566799999999999999999999843 222110 124667777766666678899999999984
Q ss_pred CcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccccccc-EEEEEEccCCCC
Q 005287 139 PSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFN-TILVMTHSSSTL 212 (704)
Q Consensus 139 d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~-vIVVLTK~D~l~ 212 (704)
+. ...+...+ ..+|++++|++++..- ..++...+..+... ..+ +|+|+||+|+..
T Consensus 87 ~f-----------~~~~~~~~--~~~D~~ilVvda~~g~-~~qt~e~l~~~~~~-----gi~~iIvvvNK~Dl~~ 142 (394)
T TIGR00485 87 DY-----------VKNMITGA--AQMDGAILVVSATDGP-MPQTREHILLARQV-----GVPYIVVFLNKCDMVD 142 (394)
T ss_pred HH-----------HHHHHHHH--hhCCEEEEEEECCCCC-cHHHHHHHHHHHHc-----CCCEEEEEEEecccCC
Confidence 32 12222222 2679999998765421 12344455554432 345 457899999863
No 184
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=98.87 E-value=1.9e-08 Score=102.64 Aligned_cols=119 Identities=9% Similarity=-0.001 Sum_probs=69.4
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCcc-ccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTE-TDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSV 155 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~-vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~I 155 (704)
...++|+++|.+|||||||+++++...... .....+.+.....+........+.++||||.... ..+..
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~~~-- 80 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF--------GGLRD-- 80 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhh--------hhhhH--
Confidence 457899999999999999999987554221 1111111111222221223468899999997542 11111
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 156 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 156 k~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
.+. ...|++|+|.+++....-..-...++.+.+. ....|+++|.||+|+.
T Consensus 81 -~~~--~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~---~~~~piilvgNK~Dl~ 130 (219)
T PLN03071 81 -GYY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGNKVDVK 130 (219)
T ss_pred -HHc--ccccEEEEEEeCCCHHHHHHHHHHHHHHHHh---CCCCcEEEEEEchhhh
Confidence 222 2678999998776432100111233334332 2247999999999975
No 185
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.86 E-value=2.2e-08 Score=101.47 Aligned_cols=119 Identities=19% Similarity=0.118 Sum_probs=69.0
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeE-cC--eEEEEEECCCCCCcccchhhhhHHHHHHH
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSV-NG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 155 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~-~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~I 155 (704)
.++|+|+|.+|||||||+|.+++........ +..+.+.......+ .+ ..+.++||||.... ... .
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~-~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~--------~~~---~ 69 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSD-PTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERF--------RSI---T 69 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCC-ceeceEEEEEEEEECCCCEEEEEEEeCCcchhH--------HHH---H
Confidence 4799999999999999999999876443321 11112222222222 23 47889999996321 111 1
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 156 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 156 k~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
..+++ .+|++++|.+++....-..-...+..+.+.... ...++++|.||+|+..
T Consensus 70 ~~~~~--~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~-~~~~iilvgNK~Dl~~ 123 (211)
T cd04111 70 RSYYR--NSVGVLLVFDITNRESFEHVHDWLEEARSHIQP-HRPVFILVGHKCDLES 123 (211)
T ss_pred HHHhc--CCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEcccccc
Confidence 22332 579999998775432100111233333333222 2356789999999863
No 186
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.86 E-value=1.5e-08 Score=119.77 Aligned_cols=113 Identities=16% Similarity=0.045 Sum_probs=78.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCcc-----ccC------------CCCccceEEEEEeeEcCeEEEEEECCCCCCccc
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTE-----TDA------------FQPATDCIREVKGSVNGIKVTFIDTPGFLPSCV 142 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~-----vs~------------~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~ 142 (704)
-+|+|+|++|+|||||+|+|+...... +.. ..+.|.+.....+.+.+.++.||||||..+..
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~- 89 (689)
T TIGR00484 11 RNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFT- 89 (689)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchh-
Confidence 489999999999999999997533221 111 23566677777888899999999999997531
Q ss_pred chhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 143 RNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 143 ~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
. .+.++++ .+|++++|++....- ...+..++..+.+. ..|+++|+||+|+.
T Consensus 90 ------~----~~~~~l~--~~D~~ilVvda~~g~-~~~~~~~~~~~~~~-----~~p~ivviNK~D~~ 140 (689)
T TIGR00484 90 ------V----EVERSLR--VLDGAVAVLDAVGGV-QPQSETVWRQANRY-----EVPRIAFVNKMDKT 140 (689)
T ss_pred ------H----HHHHHHH--HhCEEEEEEeCCCCC-ChhHHHHHHHHHHc-----CCCEEEEEECCCCC
Confidence 1 1223343 459999998765321 22344555554433 47899999999987
No 187
>PRK00049 elongation factor Tu; Reviewed
Probab=98.86 E-value=2e-08 Score=111.44 Aligned_cols=118 Identities=11% Similarity=0.032 Sum_probs=78.9
Q ss_pred CCCCCeEEEEEeCCCCcHHHHHHHHhCCCC------ccc---------cCCCCccceEEEEEeeEcCeEEEEEECCCCCC
Q 005287 75 DLDFSIRILVLGKTGVGKSATINSIFDQTK------TET---------DAFQPATDCIREVKGSVNGIKVTFIDTPGFLP 139 (704)
Q Consensus 75 ~~~~~lrIlVVGkTGvGKSTLINsLlG~~~------a~v---------s~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d 139 (704)
.....++|+++|..++|||||+++|++... ... ....+.|.+........++.+++|+||||..
T Consensus 8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~- 86 (396)
T PRK00049 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA- 86 (396)
T ss_pred CCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH-
Confidence 345679999999999999999999987311 000 0134567676666666678899999999983
Q ss_pred cccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEE-EEEEccCCC
Q 005287 140 SCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTI-LVMTHSSST 211 (704)
Q Consensus 140 ~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vI-VVLTK~D~l 211 (704)
++...+...+ ..+|++++|++.... ....+...+..+... ..|.+ +++||+|+.
T Consensus 87 ----------~f~~~~~~~~--~~aD~~llVVDa~~g-~~~qt~~~~~~~~~~-----g~p~iiVvvNK~D~~ 141 (396)
T PRK00049 87 ----------DYVKNMITGA--AQMDGAILVVSAADG-PMPQTREHILLARQV-----GVPYIVVFLNKCDMV 141 (396)
T ss_pred ----------HHHHHHHhhh--ccCCEEEEEEECCCC-CchHHHHHHHHHHHc-----CCCEEEEEEeecCCc
Confidence 1222333333 368999999876542 122455566555443 36765 689999986
No 188
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.86 E-value=4.2e-08 Score=116.92 Aligned_cols=116 Identities=18% Similarity=0.192 Sum_probs=80.0
Q ss_pred CCCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHH
Q 005287 76 LDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSV 155 (704)
Q Consensus 76 ~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~I 155 (704)
..++.+|+|+|.+|+|||||+|+|.+.... .+...+.|.+...+...+.+..++||||||..+.. .++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~-~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~--------~m~--- 354 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVA-AGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFT--------AMR--- 354 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcc-ccccCceeeeccEEEEEECCEEEEEEECCCCccch--------hHH---
Confidence 456789999999999999999999886543 23345667777667777788999999999986431 111
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 156 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 156 k~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
.+.. ..+|++++|++++.... ......+..+.. ...|+|+|+||+|+.
T Consensus 355 ~rga--~~aDiaILVVdAddGv~-~qT~e~i~~a~~-----~~vPiIVviNKiDl~ 402 (787)
T PRK05306 355 ARGA--QVTDIVVLVVAADDGVM-PQTIEAINHAKA-----AGVPIIVAINKIDKP 402 (787)
T ss_pred Hhhh--hhCCEEEEEEECCCCCC-HhHHHHHHHHHh-----cCCcEEEEEECcccc
Confidence 1222 25699999987754221 122333333222 247999999999985
No 189
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.86 E-value=2.2e-08 Score=104.42 Aligned_cols=118 Identities=19% Similarity=0.223 Sum_probs=72.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
++|+|+|.+|||||||+|.+++..... ...+++.+.......++| ..+.|+||+|..+.. .+ .. .
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~--~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~--------~~-~~--~ 67 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEE--QYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFP--------AM-RR--L 67 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCC--CCCCChhHhEEEEEEECCEEEEEEEEECCCChhhh--------HH-HH--H
Confidence 479999999999999999998755322 234454444433445555 567899999974321 11 11 1
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHh-------cccccccEEEEEEccCCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVF-------GTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~f-------G~~~~k~vIVVLTK~D~l~ 212 (704)
++ ..+|++++|.+++....-.....+++.+.+.. ......|+|+|.||+|+..
T Consensus 68 ~~--~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~ 127 (247)
T cd04143 68 SI--LTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF 127 (247)
T ss_pred Hh--ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchh
Confidence 22 26799999988765321001123334443321 0123579999999999863
No 190
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.85 E-value=4e-08 Score=95.55 Aligned_cols=116 Identities=13% Similarity=0.061 Sum_probs=71.0
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccce-EEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDC-IREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~-~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
..++|+++|.+|||||||+|++++.... .....+++.. ........+| ..+.++||+|-..... ..
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~-~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~--------~~-- 71 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFS-LNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAIL--------LN-- 71 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCC-cccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccc--------cc--
Confidence 4589999999999999999999987643 2233444332 2222233455 5678899998754311 00
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 155 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 155 Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
..++ ..+|++++|.+++... ....+...+. .+......|+++|.||+|+.
T Consensus 72 -~~~~--~~~d~~llv~d~~~~~---s~~~~~~~~~-~~~~~~~~p~iiv~NK~Dl~ 121 (169)
T cd01892 72 -DAEL--AACDVACLVYDSSDPK---SFSYCAEVYK-KYFMLGEIPCLFVAAKADLD 121 (169)
T ss_pred -hhhh--hcCCEEEEEEeCCCHH---HHHHHHHHHH-HhccCCCCeEEEEEEccccc
Confidence 1122 2679999998764332 1112223232 22222258999999999975
No 191
>PRK12739 elongation factor G; Reviewed
Probab=98.85 E-value=1.9e-08 Score=118.96 Aligned_cols=115 Identities=16% Similarity=0.104 Sum_probs=80.4
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCc-----ccc------------CCCCccceEEEEEeeEcCeEEEEEECCCCCCcc
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKT-----ETD------------AFQPATDCIREVKGSVNGIKVTFIDTPGFLPSC 141 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a-----~vs------------~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~ 141 (704)
-.+|+|+|++|+|||||+|+|+..... .+. ...+.|.+.....+.+++.+++||||||+.+.
T Consensus 8 irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f- 86 (691)
T PRK12739 8 TRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF- 86 (691)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH-
Confidence 468999999999999999999753211 111 13456777777788889999999999998432
Q ss_pred cchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 142 VRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 142 ~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
..++.+.++ .+|++++|++.... ....+..++..+.+. ..|.|+++||+|...
T Consensus 87 ----------~~e~~~al~--~~D~~ilVvDa~~g-~~~qt~~i~~~~~~~-----~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 87 ----------TIEVERSLR--VLDGAVAVFDAVSG-VEPQSETVWRQADKY-----GVPRIVFVNKMDRIG 139 (691)
T ss_pred ----------HHHHHHHHH--HhCeEEEEEeCCCC-CCHHHHHHHHHHHHc-----CCCEEEEEECCCCCC
Confidence 123344444 45999999776432 123455666665543 478999999999873
No 192
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.85 E-value=3e-08 Score=99.76 Aligned_cols=115 Identities=17% Similarity=0.146 Sum_probs=66.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCcc-cc-CCCCccceEEEEEeeE---------------------------cC----
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTE-TD-AFQPATDCIREVKGSV---------------------------NG---- 126 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~-vs-~~~~tT~~~~~~~~~~---------------------------~G---- 126 (704)
++|+++|+.|+|||||+.+|.+..... .. ...+.|..+......+ .+
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 479999999999999999998762111 00 0111121111111010 13
Q ss_pred --eEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEE
Q 005287 127 --IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILV 204 (704)
Q Consensus 127 --~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVV 204 (704)
..+.||||||.. .+...+...+. .+|++++|++++...........+..+.. .+ ..|+|+|
T Consensus 81 ~~~~i~~iDtPG~~-----------~~~~~~~~~~~--~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~~---~~~iiiv 143 (203)
T cd01888 81 LVRHVSFVDCPGHE-----------ILMATMLSGAA--VMDGALLLIAANEPCPQPQTSEHLAALEI-MG---LKHIIIV 143 (203)
T ss_pred cccEEEEEECCChH-----------HHHHHHHHhhh--cCCEEEEEEECCCCCCCcchHHHHHHHHH-cC---CCcEEEE
Confidence 789999999952 22333333332 67999999887642111223344444432 22 2478999
Q ss_pred EEccCCC
Q 005287 205 MTHSSST 211 (704)
Q Consensus 205 LTK~D~l 211 (704)
+||+|+.
T Consensus 144 vNK~Dl~ 150 (203)
T cd01888 144 QNKIDLV 150 (203)
T ss_pred EEchhcc
Confidence 9999986
No 193
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.84 E-value=2e-08 Score=96.67 Aligned_cols=113 Identities=19% Similarity=0.148 Sum_probs=68.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCe--EEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~--~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
++|+++|.+|+|||||+|++.+...... ..+++.........+++. .+.++||||...... ... .
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~---~ 67 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEE--YVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDR--------LRP---L 67 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC--CCCceeeeeEEEEEECCEEEEEEEEeCCCcccccc--------ccc---c
Confidence 5899999999999999999998764322 223333332233344544 467899999754311 000 1
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcH--HHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSDF--PLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D~--~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
++ ...|++++|.++..... ..+. .++..+... ....|+++|.||+|+.
T Consensus 68 ~~--~~~~~~ilv~~~~~~~s-~~~~~~~~~~~l~~~---~~~~piivv~nK~Dl~ 117 (174)
T cd04135 68 SY--PMTDVFLICFSVVNPAS-FQNVKEEWVPELKEY---APNVPYLLVGTQIDLR 117 (174)
T ss_pred cC--CCCCEEEEEEECCCHHH-HHHHHHHHHHHHHhh---CCCCCEEEEeEchhhh
Confidence 11 36799999977654321 1111 233333332 2357999999999975
No 194
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=98.84 E-value=3.3e-08 Score=96.93 Aligned_cols=113 Identities=19% Similarity=0.144 Sum_probs=70.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
++|+++|.+|||||||++.+...... ....|++..........++ ..+.|+||||-.... .+. ..
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~--~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~~---~~ 68 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYD--------RLR---PL 68 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEECCCccchh--------hhh---hh
Confidence 68999999999999999999975531 2233444332332334555 567899999985431 111 11
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcH--HHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSDF--PLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D~--~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
++ ..+|++++|.+++.... .... ..+..+.... ...|+|+|.||.|+.
T Consensus 69 ~~--~~a~~~ilv~d~~~~~s-~~~~~~~w~~~i~~~~---~~~piilvgnK~Dl~ 118 (175)
T cd01874 69 SY--PQTDVFLVCFSVVSPSS-FENVKEKWVPEITHHC---PKTPFLLVGTQIDLR 118 (175)
T ss_pred hc--ccCCEEEEEEECCCHHH-HHHHHHHHHHHHHHhC---CCCCEEEEEECHhhh
Confidence 23 26799999987754321 1111 1333343321 247999999999975
No 195
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.83 E-value=2.7e-08 Score=115.48 Aligned_cols=114 Identities=18% Similarity=0.165 Sum_probs=75.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccc--cCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTET--DAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~v--s~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
++|+++|.+|+|||||+|+|+|...... ....+.|.++........+..+.||||||.. .+...+..
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe-----------~f~~~~~~ 69 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHE-----------KFISNAIA 69 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHH-----------HHHHHHHh
Confidence 4799999999999999999998652221 1223556666666667778999999999962 12222222
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccccccc-EEEEEEccCCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFN-TILVMTHSSSTL 212 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~-vIVVLTK~D~l~ 212 (704)
.+ ..+|++++|++++.... .+....+..+. .+| .+ +|+|+||+|+..
T Consensus 70 g~--~~aD~aILVVDa~~G~~-~qT~ehl~il~-~lg----i~~iIVVlNK~Dlv~ 117 (581)
T TIGR00475 70 GG--GGIDAALLVVDADEGVM-TQTGEHLAVLD-LLG----IPHTIVVITKADRVN 117 (581)
T ss_pred hh--ccCCEEEEEEECCCCCc-HHHHHHHHHHH-HcC----CCeEEEEEECCCCCC
Confidence 33 36899999988764211 12333343332 222 45 999999999873
No 196
>PLN03126 Elongation factor Tu; Provisional
Probab=98.83 E-value=4.9e-08 Score=110.90 Aligned_cols=119 Identities=10% Similarity=-0.000 Sum_probs=77.4
Q ss_pred CCCCCeEEEEEeCCCCcHHHHHHHHhCCCCccc---------------cCCCCccceEEEEEeeEcCeEEEEEECCCCCC
Q 005287 75 DLDFSIRILVLGKTGVGKSATINSIFDQTKTET---------------DAFQPATDCIREVKGSVNGIKVTFIDTPGFLP 139 (704)
Q Consensus 75 ~~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~v---------------s~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d 139 (704)
.....++|+++|++++|||||+|+|++...... ....+.|.+.....+..++.+++||||||..+
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~ 156 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD 156 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence 345679999999999999999999996322111 11234555655556667889999999999843
Q ss_pred cccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccccccc-EEEEEEccCCCC
Q 005287 140 SCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFN-TILVMTHSSSTL 212 (704)
Q Consensus 140 ~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~-vIVVLTK~D~l~ 212 (704)
....+...+. .+|++++|++..... ..+..+.+..+... ..+ +|+++||+|+..
T Consensus 157 -----------f~~~~~~g~~--~aD~ailVVda~~G~-~~qt~e~~~~~~~~-----gi~~iIvvvNK~Dl~~ 211 (478)
T PLN03126 157 -----------YVKNMITGAA--QMDGAILVVSGADGP-MPQTKEHILLAKQV-----GVPNMVVFLNKQDQVD 211 (478)
T ss_pred -----------HHHHHHHHHh--hCCEEEEEEECCCCC-cHHHHHHHHHHHHc-----CCCeEEEEEecccccC
Confidence 2222333332 679999998765321 12334445443332 345 788999999863
No 197
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.83 E-value=3.8e-08 Score=101.27 Aligned_cols=112 Identities=14% Similarity=0.131 Sum_probs=68.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCccccCC---------------CCccceEEEEEeeEc----------CeEEEEEECC
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTETDAF---------------QPATDCIREVKGSVN----------GIKVTFIDTP 135 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~vs~~---------------~~tT~~~~~~~~~~~----------G~~v~LIDTP 135 (704)
+|+++|..++|||||+++|+.......... .+.|-....+...+. +..+.|||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 699999999999999999986543221111 112222222222222 6789999999
Q ss_pred CCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 136 GFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 136 Gl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
|..+.. ..+..+++ .+|++++|+++...- ......+++..... ..|+|+|+||+|+.
T Consensus 82 G~~~f~-----------~~~~~~l~--~aD~~ilVvD~~~g~-~~~t~~~l~~~~~~-----~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFS-----------SEVTAALR--LCDGALVVVDAVEGV-CVQTETVLRQALKE-----RVKPVLVINKIDRL 138 (222)
T ss_pred CccccH-----------HHHHHHHH--hcCeeEEEEECCCCC-CHHHHHHHHHHHHc-----CCCEEEEEECCCcc
Confidence 996541 12233343 569999997765321 11233344433322 36899999999986
No 198
>PRK09866 hypothetical protein; Provisional
Probab=98.82 E-value=4.2e-08 Score=112.90 Aligned_cols=73 Identities=15% Similarity=0.159 Sum_probs=47.9
Q ss_pred eEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEE
Q 005287 127 IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMT 206 (704)
Q Consensus 127 ~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLT 206 (704)
.+++||||||+...... ..+..+. +.+. .+|+||||++..... ...|..+++.+.+. +. ..|+|+|+|
T Consensus 230 ~QIIFVDTPGIhk~~~~--~L~k~M~----eqL~--eADvVLFVVDat~~~-s~~DeeIlk~Lkk~-~K--~~PVILVVN 297 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQP--HLQKMLN----QQLA--RASAVLAVLDYTQLK-SISDEEVREAILAV-GQ--SVPLYVLVN 297 (741)
T ss_pred CCEEEEECCCCCCccch--HHHHHHH----HHHh--hCCEEEEEEeCCCCC-ChhHHHHHHHHHhc-CC--CCCEEEEEE
Confidence 46899999999765221 1122222 3343 679999998776421 23577777777664 11 149999999
Q ss_pred ccCCC
Q 005287 207 HSSST 211 (704)
Q Consensus 207 K~D~l 211 (704)
|+|..
T Consensus 298 KIDl~ 302 (741)
T PRK09866 298 KFDQQ 302 (741)
T ss_pred cccCC
Confidence 99986
No 199
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.82 E-value=3.3e-08 Score=100.00 Aligned_cols=113 Identities=16% Similarity=0.152 Sum_probs=66.6
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCcccc---------CC---------CCccceEEEEEeeE-----cCeEEEEEECCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTETD---------AF---------QPATDCIREVKGSV-----NGIKVTFIDTPGF 137 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~vs---------~~---------~~tT~~~~~~~~~~-----~G~~v~LIDTPGl 137 (704)
+|+|+|.+|+|||||+++|++....... .+ .+.|-........+ ....+.+|||||.
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 5899999999999999999875433210 00 11122222222222 2368899999998
Q ss_pred CCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 138 LPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 138 ~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
.+.. .....++. .+|++++|++...... .....+++.+.. ...|.++|+||+|...
T Consensus 82 ~~f~-----------~~~~~~~~--~aD~~llVvD~~~~~~-~~~~~~~~~~~~-----~~~p~iiviNK~D~~~ 137 (213)
T cd04167 82 VNFM-----------DEVAAALR--LSDGVVLVVDVVEGVT-SNTERLIRHAIL-----EGLPIVLVINKIDRLI 137 (213)
T ss_pred cchH-----------HHHHHHHH--hCCEEEEEEECCCCCC-HHHHHHHHHHHH-----cCCCEEEEEECcccCc
Confidence 6531 11223332 6699999987643221 122233333222 1379999999999874
No 200
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.82 E-value=7.1e-09 Score=99.80 Aligned_cols=58 Identities=34% Similarity=0.497 Sum_probs=50.4
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCC
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGF 137 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl 137 (704)
....+|+++|.|||||||++|+|++.....++..+++|+....+.. +..+.+|||||+
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL---DNKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe---cCCEEEEECCCC
Confidence 3568999999999999999999999988888888889998877654 356899999997
No 201
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.82 E-value=2.5e-08 Score=96.16 Aligned_cols=114 Identities=14% Similarity=0.149 Sum_probs=67.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
.+|+|+|.+|||||||++.+++...... ..+++.........+++ ..+.++||||..+.. .+. ..
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~~---~~ 68 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEV--YVPTVFENYVADIEVDGKQVELALWDTAGQEDYD--------RLR---PL 68 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCccccceEEEEEECCEEEEEEEEeCCCchhhh--------hcc---cc
Confidence 5899999999999999999998653221 22222221122233444 467899999974321 110 01
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcH--HHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSDF--PLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D~--~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
++ ...|++++|.+++.... ..+. ..+..+... ....|+++|.||+|+..
T Consensus 69 ~~--~~~d~~i~v~~~~~~~s-~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~ 119 (175)
T cd01870 69 SY--PDTDVILMCFSIDSPDS-LENIPEKWTPEVKHF---CPNVPIILVGNKKDLRN 119 (175)
T ss_pred cc--CCCCEEEEEEECCCHHH-HHHHHHHHHHHHHhh---CCCCCEEEEeeChhccc
Confidence 12 36799998877764321 0111 122333322 12479999999999763
No 202
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=98.80 E-value=5.6e-08 Score=98.38 Aligned_cols=114 Identities=18% Similarity=0.265 Sum_probs=70.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCc-cceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPA-TDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~t-T~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
+.|+++|..|||||||++.+....... ...++ +.+.......++| ..+.|+||+|-... ..+. .
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~--~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~--------~~l~---~ 67 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCE--ACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERF--------NSIT---S 67 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCC--cCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhh--------HHHH---H
Confidence 479999999999999999998754322 12222 2233333345555 67789999997422 1121 2
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCc-HHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 157 KFIRRSPPDIVLYFERLDLISMGFSD-FPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~t~~~~D-~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
.+++ .+|++++|.+++.... ... ...+..+..... ...|+|+|.||+|+.
T Consensus 68 ~y~~--~ad~iIlVfDvtd~~S-f~~l~~w~~~i~~~~~--~~~piilVgNK~DL~ 118 (202)
T cd04120 68 AYYR--SAKGIILVYDITKKET-FDDLPKWMKMIDKYAS--EDAELLLVGNKLDCE 118 (202)
T ss_pred HHhc--CCCEEEEEEECcCHHH-HHHHHHHHHHHHHhCC--CCCcEEEEEECcccc
Confidence 3343 6799999988765431 111 122333333322 247899999999975
No 203
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.80 E-value=3.1e-08 Score=96.05 Aligned_cols=115 Identities=17% Similarity=0.104 Sum_probs=70.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
++|+++|.+|+|||||++++++.... ....+++.+.......+++ ..+.++||||...... +. ..
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~---~~ 67 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYP--TEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDK--------LR---PL 67 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhcc--------cc---cc
Confidence 58999999999999999999875422 2234444444333444555 4678899999843311 11 11
Q ss_pred HHhcCCCCEEEEEEeccCcc-CCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 158 FIRRSPPDIVLYFERLDLIS-MGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t-~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
++ ..+|++++|.++.... .......++..+... ....|+++|.||+|+..
T Consensus 68 ~~--~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~ 118 (173)
T cd04130 68 CY--PDTDVFLLCFSVVNPSSFQNISEKWIPEIRKH---NPKAPIILVGTQADLRT 118 (173)
T ss_pred cc--CCCcEEEEEEECCCHHHHHHHHHHHHHHHHhh---CCCCCEEEEeeChhhcc
Confidence 22 3679999997765432 100011233333332 12479999999999863
No 204
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=98.80 E-value=3.7e-08 Score=101.13 Aligned_cols=113 Identities=12% Similarity=0.077 Sum_probs=69.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 159 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~i 159 (704)
++|+|+|.+|||||||+|.+++...... .+ |.........+....+.|+||||.... ..+.. .++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~---~~-Tig~~~~~~~~~~~~l~iwDt~G~e~~--------~~l~~---~~~ 65 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDT---VS-TVGGAFYLKQWGPYNISIWDTAGREQF--------HGLGS---MYC 65 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCC---CC-ccceEEEEEEeeEEEEEEEeCCCcccc--------hhhHH---HHh
Confidence 5899999999999999999998764321 12 222222222345678999999997432 11111 223
Q ss_pred hcCCCCEEEEEEeccCccCCCCcH-HHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 160 RRSPPDIVLYFERLDLISMGFSDF-PLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 160 k~~~~dvVL~Vi~ld~~t~~~~D~-~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
..+|++++|.+++.... ..+. ..+..+.+... ...|+|+|.||+|+..
T Consensus 66 --~~ad~~IlV~Dvt~~~S-f~~l~~~~~~l~~~~~--~~~piIlVgNK~DL~~ 114 (220)
T cd04126 66 --RGAAAVILTYDVSNVQS-LEELEDRFLGLTDTAN--EDCLFAVVGNKLDLTE 114 (220)
T ss_pred --ccCCEEEEEEECCCHHH-HHHHHHHHHHHHHhcC--CCCcEEEEEECccccc
Confidence 26799999988764321 1111 12222332211 2368999999999864
No 205
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.80 E-value=7.1e-08 Score=109.52 Aligned_cols=117 Identities=17% Similarity=0.091 Sum_probs=74.5
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccC--------------------------------CCCccceEEEEEeeE
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDA--------------------------------FQPATDCIREVKGSV 124 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~--------------------------------~~~tT~~~~~~~~~~ 124 (704)
...++|+++|+.++|||||++.|+......... ..+.|.++....+..
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 456999999999999999999998654332210 012344555555667
Q ss_pred cCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEE
Q 005287 125 NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILV 204 (704)
Q Consensus 125 ~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVV 204 (704)
++.++.||||||..+ +...+...+ ..+|++++|++....-. ..+...+.. ...+| .+++|+|
T Consensus 105 ~~~~i~~iDTPGh~~-----------f~~~~~~~l--~~aD~allVVDa~~G~~-~qt~~~~~l-~~~lg---~~~iIvv 166 (474)
T PRK05124 105 EKRKFIIADTPGHEQ-----------YTRNMATGA--STCDLAILLIDARKGVL-DQTRRHSFI-ATLLG---IKHLVVA 166 (474)
T ss_pred CCcEEEEEECCCcHH-----------HHHHHHHHH--hhCCEEEEEEECCCCcc-ccchHHHHH-HHHhC---CCceEEE
Confidence 788999999999521 112222223 37799999987653211 123333332 33333 2578999
Q ss_pred EEccCCC
Q 005287 205 MTHSSST 211 (704)
Q Consensus 205 LTK~D~l 211 (704)
+||+|+.
T Consensus 167 vNKiD~~ 173 (474)
T PRK05124 167 VNKMDLV 173 (474)
T ss_pred EEeeccc
Confidence 9999986
No 206
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.78 E-value=2e-08 Score=103.22 Aligned_cols=114 Identities=17% Similarity=0.082 Sum_probs=70.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCcc------c------cCC-CCccc------------------------eEEEEEee
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTE------T------DAF-QPATD------------------------CIREVKGS 123 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~------v------s~~-~~tT~------------------------~~~~~~~~ 123 (704)
+|+++|..++|||||++.+....... . ... .+.|. ........
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 58999999999999999997421100 0 000 11111 00001224
Q ss_pred EcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEE
Q 005287 124 VNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTIL 203 (704)
Q Consensus 124 ~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIV 203 (704)
..+..++||||||..+. .+.+.+.+....+|++++|++++..- ...+..++..+... ..|+|+
T Consensus 81 ~~~~~i~liDtpG~~~~-----------~~~~~~~~~~~~~D~~llVvda~~g~-~~~d~~~l~~l~~~-----~ip~iv 143 (224)
T cd04165 81 KSSKLVTFIDLAGHERY-----------LKTTLFGLTGYAPDYAMLVVAANAGI-IGMTKEHLGLALAL-----NIPVFV 143 (224)
T ss_pred eCCcEEEEEECCCcHHH-----------HHHHHHhhcccCCCEEEEEEECCCCC-cHHHHHHHHHHHHc-----CCCEEE
Confidence 46789999999997422 22233333323679999998765422 23566677766654 478999
Q ss_pred EEEccCCC
Q 005287 204 VMTHSSST 211 (704)
Q Consensus 204 VLTK~D~l 211 (704)
|+||+|..
T Consensus 144 vvNK~D~~ 151 (224)
T cd04165 144 VVTKIDLA 151 (224)
T ss_pred EEECcccc
Confidence 99999986
No 207
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.78 E-value=2.6e-08 Score=98.62 Aligned_cols=113 Identities=17% Similarity=0.177 Sum_probs=68.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHHHHH
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 158 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ 158 (704)
+|+|+|.+|||||||++.+++...... ..++...........++ ..+.|+||||-.... .+.. .+
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~--~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~--------~l~~---~~ 68 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQV--YEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFD--------RLRS---LS 68 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCc--cCCcceeeeEEEEEECCEEEEEEEEECCCChhcc--------cccc---cc
Confidence 799999999999999999998654332 12222111111222334 578999999974321 1111 12
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcH--HHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 159 IRRSPPDIVLYFERLDLISMGFSDF--PLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 159 ik~~~~dvVL~Vi~ld~~t~~~~D~--~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
. ..+|++++|.+++.... .... ..+..+... ....|+++|.||+|+..
T Consensus 69 ~--~~a~~~ilv~dv~~~~s-f~~~~~~~~~~i~~~---~~~~piilvgNK~Dl~~ 118 (189)
T cd04134 69 Y--ADTDVIMLCFSVDSPDS-LENVESKWLGEIREH---CPGVKLVLVALKCDLRE 118 (189)
T ss_pred c--cCCCEEEEEEECCCHHH-HHHHHHHHHHHHHHh---CCCCCEEEEEEChhhcc
Confidence 2 36799999987765431 1111 233444432 22579999999999864
No 208
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.78 E-value=1.7e-08 Score=107.43 Aligned_cols=136 Identities=20% Similarity=0.209 Sum_probs=85.1
Q ss_pred CccccccchhhHHHHHHhhcCCCCchHHHHHHH---------HHhhhcccccccchhhhhh-c-------------ccch
Q 005287 3 DPLVKIEDLQVKFLRLLQRFGQSQDNILAVKVL---------YRLHLATLIRAGESDMKMV-N-------------LRSD 59 (704)
Q Consensus 3 ~~~~ki~~~rvk~lrl~~R~G~s~ed~~VaqvL---------~rl~lae~~~~~~~~~~~~-~-------------lg~d 59 (704)
+..+.++.+++.++.++.|.+.+.++..+.+.+ +|.++++.... .....++ . .+..
T Consensus 17 ~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~~kp~iiVlNK~DL~~~~~~-~~~~~~~~~~~~~vi~vSa~~~~gi~ 95 (287)
T PRK09563 17 EIKENLKLVDVVIEVLDARIPLSSENPMIDKIIGNKPRLLILNKSDLADPEVT-KKWIEYFEEQGIKALAINAKKGQGVK 95 (287)
T ss_pred HHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhCCCCEEEEEEchhcCCHHHH-HHHHHHHHHcCCeEEEEECCCcccHH
Confidence 345677888888888999988888887766654 23333321100 0000000 0 0111
Q ss_pred hHHH----Hhhcccc--CCCCCCCCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEE
Q 005287 60 RTRA----IAREQEA--TGIPDLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFID 133 (704)
Q Consensus 60 ~a~~----ia~~~~~--~~~~~~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LID 133 (704)
.... ++..... .........++|+|+|.|||||||+||+|++...+.++..+++|+..+.+.. +..+.|||
T Consensus 96 ~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~D 172 (287)
T PRK09563 96 KILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKL---GKGLELLD 172 (287)
T ss_pred HHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEe---CCcEEEEE
Confidence 1111 1000000 0001123568999999999999999999999998899888999998875553 45689999
Q ss_pred CCCCCCccc
Q 005287 134 TPGFLPSCV 142 (704)
Q Consensus 134 TPGl~d~~~ 142 (704)
|||+..+..
T Consensus 173 tPGi~~~~~ 181 (287)
T PRK09563 173 TPGILWPKL 181 (287)
T ss_pred CCCcCCCCC
Confidence 999987754
No 209
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.77 E-value=7.1e-09 Score=102.83 Aligned_cols=57 Identities=26% Similarity=0.334 Sum_probs=46.2
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCC--------ccccCCCCccceEEEEEeeEcCeEEEEEECCCC
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTK--------TETDAFQPATDCIREVKGSVNGIKVTFIDTPGF 137 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~--------a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl 137 (704)
...+|+++|.||||||||||+|++... ..++..+++|++...+.... .+.||||||+
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG~ 190 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPGI 190 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcCC
Confidence 346899999999999999999998653 34466778898888777532 5799999997
No 210
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.76 E-value=8.7e-08 Score=93.89 Aligned_cols=113 Identities=19% Similarity=0.154 Sum_probs=68.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
++|+|+|.+|||||||+.+++..... ....+++..........++ ..+.++||||.... ..+. ..
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~~---~~ 68 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY--------DRLR---PL 68 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--CcCCCcceeeeEEEEEECCEEEEEEEEECCCchhh--------hhhh---hh
Confidence 68999999999999999999875422 1223333322222333444 56789999996432 1111 11
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcH--HHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSDF--PLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D~--~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
++ ..+|++++|.+++.... .... ..+..+... ....|+|+|.||.|+.
T Consensus 69 ~~--~~~d~~ilv~d~~~~~s-f~~~~~~~~~~~~~~---~~~~piilvgnK~Dl~ 118 (174)
T cd01871 69 SY--PQTDVFLICFSLVSPAS-FENVRAKWYPEVRHH---CPNTPIILVGTKLDLR 118 (174)
T ss_pred hc--CCCCEEEEEEECCCHHH-HHHHHHHHHHHHHHh---CCCCCEEEEeeChhhc
Confidence 23 36899999988765321 1111 123333332 1247999999999975
No 211
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=98.76 E-value=1.5e-07 Score=94.13 Aligned_cols=116 Identities=16% Similarity=0.141 Sum_probs=72.1
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCC-ccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQP-ATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~-tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
..++|+|+|..|||||||++++.+.... ....+ .+.+........++ ..+.|+||||.... ..+.
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~--~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~--------~~l~-- 72 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTE--SPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRF--------CTIF-- 72 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHH--------HHHH--
Confidence 4589999999999999999999875321 11111 12233333344455 57789999998432 2222
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 155 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 155 Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
..+.+ .+|++|+|.+++....-..-...+..+.+.. ...|+|+|.||.|+.
T Consensus 73 -~~~~~--~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~---~~~piilVGNK~DL~ 123 (189)
T cd04121 73 -RSYSR--GAQGIILVYDITNRWSFDGIDRWIKEIDEHA---PGVPKILVGNRLHLA 123 (189)
T ss_pred -HHHhc--CCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccch
Confidence 22332 7799999988765431111123444443332 257999999999985
No 212
>PRK12288 GTPase RsgA; Reviewed
Probab=98.76 E-value=1.8e-08 Score=110.08 Aligned_cols=82 Identities=18% Similarity=0.316 Sum_probs=57.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCccccCCCC-------ccceEEEEEeeEcCeEEEEEECCCCCCcccchh--hhhHHH
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTETDAFQP-------ATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNV--KRNRKI 151 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~-------tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~--~~n~~i 151 (704)
.++++|.||||||||||+|++.....++.++. ||+....+....++ .|||||||......+. ..-...
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~l~~~~~~~l~~~ 283 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFGLWHLEPEQVTQG 283 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCcccCCCCCHHHHHHh
Confidence 47999999999999999999998877765543 67777766654344 6999999998765421 122334
Q ss_pred HHHHHHHHhcCCCC
Q 005287 152 MLSVKKFIRRSPPD 165 (704)
Q Consensus 152 l~~Ik~~ik~~~~d 165 (704)
..++..+...|++.
T Consensus 284 F~ei~~~~~~CrF~ 297 (347)
T PRK12288 284 FVEFRDYLGTCKFR 297 (347)
T ss_pred hHHHHHHhcCCCCC
Confidence 44555655555543
No 213
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.75 E-value=7e-08 Score=112.08 Aligned_cols=115 Identities=17% Similarity=0.154 Sum_probs=76.5
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCe-EEEEEECCCCCCcccchhhhhHHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI-KVTFIDTPGFLPSCVRNVKRNRKIMLSV 155 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~-~v~LIDTPGl~d~~~~~~~~n~~il~~I 155 (704)
..+.+|+++|.+|+|||||+|+|.+..... ...++.|.+...+...+.+. .+.||||||..+.. .++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~-~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~--------~~r--- 152 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQ-GEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFT--------SMR--- 152 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccc-ccCCceeecceEEEEEECCCcEEEEEECCCCcchh--------hHH---
Confidence 456799999999999999999999876443 33445676666666666544 89999999985431 111
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 156 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 156 k~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
.+.. ..+|++++|++++.... .+....+..+.. ...|+|+++||+|+.
T Consensus 153 ~rga--~~aDiaILVVda~dgv~-~qT~e~i~~~~~-----~~vPiIVviNKiDl~ 200 (587)
T TIGR00487 153 ARGA--KVTDIVVLVVAADDGVM-PQTIEAISHAKA-----ANVPIIVAINKIDKP 200 (587)
T ss_pred Hhhh--ccCCEEEEEEECCCCCC-HhHHHHHHHHHH-----cCCCEEEEEECcccc
Confidence 1222 36799999987654221 122233332222 247999999999975
No 214
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.75 E-value=7.2e-08 Score=114.07 Aligned_cols=115 Identities=15% Similarity=0.141 Sum_probs=74.6
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeE----cCeEEEEEECCCCCCcccchhhhhHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSV----NGIKVTFIDTPGFLPSCVRNVKRNRKIM 152 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~----~G~~v~LIDTPGl~d~~~~~~~~n~~il 152 (704)
..+.+|+|+|.+|+|||||+|+|.+..... +...+.|.+...+...+ .+..++||||||.... .
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~-~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F-----------~ 309 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQ-KEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAF-----------S 309 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCcc-ccCCccccccceEEEEEEecCCceEEEEEECCcHHHH-----------H
Confidence 456799999999999999999999866543 22344555444333333 3589999999997321 1
Q ss_pred HHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 153 LSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 153 ~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
....+++. .+|++++|++++.... .+....+..+.. ...|+|+|+||+|+.
T Consensus 310 ~mr~rg~~--~aDiaILVVDA~dGv~-~QT~E~I~~~k~-----~~iPiIVViNKiDl~ 360 (742)
T CHL00189 310 SMRSRGAN--VTDIAILIIAADDGVK-PQTIEAINYIQA-----ANVPIIVAINKIDKA 360 (742)
T ss_pred HHHHHHHH--HCCEEEEEEECcCCCC-hhhHHHHHHHHh-----cCceEEEEEECCCcc
Confidence 11223332 5799999987654321 123334443322 247999999999976
No 215
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.75 E-value=2.3e-08 Score=105.78 Aligned_cols=63 Identities=25% Similarity=0.313 Sum_probs=53.4
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCccc
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCV 142 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~ 142 (704)
...++|+|+|.|||||||+||+|.+.....++..+++|+..+.+.. +..+.|+||||+.....
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtPG~~~~~~ 178 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKL---SDGLELLDTPGILWPKF 178 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEe---CCCEEEEECCCcccCCC
Confidence 3468999999999999999999999998888888888988776553 34689999999977654
No 216
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.74 E-value=3.4e-09 Score=103.86 Aligned_cols=61 Identities=30% Similarity=0.349 Sum_probs=39.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCcccc-------CCCCccceEEEEEeeEcCeEEEEEECCCCCCcccc
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETD-------AFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVR 143 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs-------~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~ 143 (704)
-.++++|++|||||||||+|++.....++ ....||+....+....+ ..|||||||.+....
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~~l~ 103 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSFGLW 103 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT--GC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCccccc
Confidence 47899999999999999999998655542 22346777776665323 499999999887654
No 217
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.74 E-value=1.1e-07 Score=105.97 Aligned_cols=114 Identities=18% Similarity=0.112 Sum_probs=73.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCcccc--------------------------------CCCCccceEEEEEeeEcCe
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETD--------------------------------AFQPATDCIREVKGSVNGI 127 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs--------------------------------~~~~tT~~~~~~~~~~~G~ 127 (704)
++|+++|+.++|||||++.|+........ ...+.|.+.....+...+.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 58999999999999999999754322110 0123455666666677889
Q ss_pred EEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEc
Q 005287 128 KVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTH 207 (704)
Q Consensus 128 ~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK 207 (704)
++.||||||..+ +...+...+ ..+|++++|++....- ..++...+..+. .+| .+++|+|+||
T Consensus 81 ~~~liDtPGh~~-----------f~~~~~~~~--~~aD~allVVda~~G~-~~qt~~~~~~~~-~~~---~~~iivviNK 142 (406)
T TIGR02034 81 KFIVADTPGHEQ-----------YTRNMATGA--STADLAVLLVDARKGV-LEQTRRHSYIAS-LLG---IRHVVLAVNK 142 (406)
T ss_pred EEEEEeCCCHHH-----------HHHHHHHHH--hhCCEEEEEEECCCCC-ccccHHHHHHHH-HcC---CCcEEEEEEe
Confidence 999999999632 122222233 2679999998765321 123444444333 333 2478999999
Q ss_pred cCCC
Q 005287 208 SSST 211 (704)
Q Consensus 208 ~D~l 211 (704)
+|..
T Consensus 143 ~D~~ 146 (406)
T TIGR02034 143 MDLV 146 (406)
T ss_pred cccc
Confidence 9986
No 218
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.74 E-value=1.4e-08 Score=109.91 Aligned_cols=63 Identities=30% Similarity=0.421 Sum_probs=55.8
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCccc
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCV 142 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~ 142 (704)
....+++|||-||||||||||+|+|+..+.++..+++|+..+.+.... .+.|+||||+.....
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~---~i~LlDtPGii~~~~ 192 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDD---GIYLLDTPGIIPPKF 192 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCC---CeEEecCCCcCCCCc
Confidence 346899999999999999999999999999999999999999888543 389999999988754
No 219
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.73 E-value=2.2e-08 Score=104.25 Aligned_cols=87 Identities=20% Similarity=0.259 Sum_probs=59.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCC-------CCccceEEEEEeeEcCeEEEEEECCCCCCcccchhh--hhHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAF-------QPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVK--RNRK 150 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~-------~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~--~n~~ 150 (704)
-.++++|.||||||||||+|++.....++.. ..||+....+.. .+| .||||||+......+.. .-..
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l-~~~---~liDtPG~~~~~l~~~~~~~~~~ 196 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF-HGG---LIADTPGFNEFGLWHLEPEQLTQ 196 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc-CCc---EEEeCCCccccCCCCCCHHHHHH
Confidence 4789999999999999999999876665433 237888887776 233 89999999886553311 1223
Q ss_pred HHHHHHHHHhcCCCCEEEEE
Q 005287 151 IMLSVKKFIRRSPPDIVLYF 170 (704)
Q Consensus 151 il~~Ik~~ik~~~~dvVL~V 170 (704)
...++..+...|++.-|...
T Consensus 197 ~f~e~~~~~~~C~f~~C~H~ 216 (245)
T TIGR00157 197 GFVEFRDYLGECKFRDCLHQ 216 (245)
T ss_pred hCHHHHHHhCCCCCCCCccC
Confidence 34456666665655444433
No 220
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.72 E-value=2.2e-08 Score=106.68 Aligned_cols=91 Identities=16% Similarity=0.254 Sum_probs=72.7
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
...++++||.|+||||||+|.|++.+ ..+.+++.||..+.....+++|.++.++|+||+......+.....+++..++
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~-seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R- 139 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTK-SEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVAR- 139 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCC-ccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeec-
Confidence 35699999999999999999999976 5667788899999999999999999999999999876554222344433332
Q ss_pred HHhcCCCCEEEEEEeccC
Q 005287 158 FIRRSPPDIVLYFERLDL 175 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~ 175 (704)
.+|+|++|+++..
T Consensus 140 -----~ADlIiiVld~~~ 152 (365)
T COG1163 140 -----NADLIIIVLDVFE 152 (365)
T ss_pred -----cCCEEEEEEecCC
Confidence 6799999976553
No 221
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.71 E-value=3.2e-07 Score=94.41 Aligned_cols=126 Identities=17% Similarity=0.151 Sum_probs=77.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCC-CCccc-cCCCCccceEEEEEeeE---cCeEEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQ-TKTET-DAFQPATDCIREVKGSV---NGIKVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~-~~a~v-s~~~~tT~~~~~~~~~~---~G~~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
..|+|+|++++|||||+|.|+|. ..+.+ ....++|+.+......+ .+..++++||||+.+..... ...+..+..
T Consensus 8 ~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~-~~~~~~~~~ 86 (224)
T cd01851 8 AVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGE-FEDDARLFA 86 (224)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCc-hhhhhHHHH
Confidence 57899999999999999999998 34554 45578888776665544 36789999999998874321 122222222
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHH-----------HhcccccccEEEEEEccCCCCC
Q 005287 155 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTE-----------VFGTAIWFNTILVMTHSSSTLP 213 (704)
Q Consensus 155 Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~-----------~fG~~~~k~vIVVLTK~D~l~p 213 (704)
+.-. -.++++|........ .+...+..+.+ ..........+.|+--++...+
T Consensus 87 l~~l----lss~~i~n~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ll~vvRD~~~~~~ 149 (224)
T cd01851 87 LATL----LSSVLIYNSWETILG---DDLAALMGLLKTTLEVLGLAGLTEFEKPKPLLLFVVRDFSLDTP 149 (224)
T ss_pred HHHH----HhCEEEEeccCcccH---HHHHHHHHHHHHHHHhhhhhhhhhcccCCCceEEEEecCcCCcc
Confidence 2222 247888885443222 23333333333 1122334566777766665533
No 222
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.71 E-value=1e-07 Score=94.04 Aligned_cols=113 Identities=16% Similarity=0.132 Sum_probs=68.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
++|+++|.+|||||||++.+.+..... ...++..........+++ ..+.|+||||-... ..+.. .
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~--------~~~~~---~ 68 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPE--TYVPTVFENYTASFEIDEQRIELSLWDTSGSPYY--------DNVRP---L 68 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCC--CcCCceEEEEEEEEEECCEEEEEEEEECCCchhh--------hhcch---h
Confidence 689999999999999999999765321 222332222222233444 46789999996322 11111 1
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCc--HHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSD--FPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D--~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
+. ..+|++++|.+++.... ... ...+..+.+.. ...|+|+|.||.|+.
T Consensus 69 ~~--~~a~~~ilvfdit~~~S-f~~~~~~w~~~i~~~~---~~~~iilVgnK~DL~ 118 (178)
T cd04131 69 CY--PDSDAVLICFDISRPET-LDSVLKKWRGEIQEFC---PNTKVLLVGCKTDLR 118 (178)
T ss_pred hc--CCCCEEEEEEECCChhh-HHHHHHHHHHHHHHHC---CCCCEEEEEEChhhh
Confidence 22 37799999988764321 111 12333344332 247899999999974
No 223
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.70 E-value=1.2e-07 Score=110.22 Aligned_cols=112 Identities=21% Similarity=0.207 Sum_probs=74.6
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCcc-----cc----------CCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchh
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTE-----TD----------AFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNV 145 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~-----vs----------~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~ 145 (704)
+|+|+|..++|||||+++|+...... +. ...+.|-........+.+.++.||||||..+.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF----- 77 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADF----- 77 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHH-----
Confidence 79999999999999999998532111 00 11245666666677889999999999998543
Q ss_pred hhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 146 KRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 146 ~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
...+.++++ .+|++++|+++..... .+....+..+... ..|.|+|+||+|..
T Consensus 78 ------~~ev~~~l~--~aD~alLVVDa~~G~~-~qT~~~l~~a~~~-----~ip~IVviNKiD~~ 129 (594)
T TIGR01394 78 ------GGEVERVLG--MVDGVLLLVDASEGPM-PQTRFVLKKALEL-----GLKPIVVINKIDRP 129 (594)
T ss_pred ------HHHHHHHHH--hCCEEEEEEeCCCCCc-HHHHHHHHHHHHC-----CCCEEEEEECCCCC
Confidence 122334443 5699999977643211 1233444444332 46889999999975
No 224
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.70 E-value=2.3e-07 Score=103.84 Aligned_cols=118 Identities=16% Similarity=0.158 Sum_probs=75.6
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccc-------------------------c-----CCCCccceEEEEEeeEcC
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTET-------------------------D-----AFQPATDCIREVKGSVNG 126 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~v-------------------------s-----~~~~tT~~~~~~~~~~~G 126 (704)
...++|+++|.+++|||||++.|+....... + ...+.|.+.....+..++
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 3468999999999999999999984221110 0 123567777777778889
Q ss_pred eEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccC--CCCcHHHHHHHHHHhcccccccEEEE
Q 005287 127 IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISM--GFSDFPLLKLMTEVFGTAIWFNTILV 204 (704)
Q Consensus 127 ~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~--~~~D~~lLk~L~~~fG~~~~k~vIVV 204 (704)
..+.||||||..+ +...+...+ ..+|++++|++++.... .......+ .+.+.++ ..++|+|
T Consensus 85 ~~i~iiDtpGh~~-----------f~~~~~~~~--~~aD~~ilVvDa~~~~~~~~~~t~~~~-~~~~~~~---~~~iIVv 147 (426)
T TIGR00483 85 YEVTIVDCPGHRD-----------FIKNMITGA--SQADAAVLVVAVGDGEFEVQPQTREHA-FLARTLG---INQLIVA 147 (426)
T ss_pred eEEEEEECCCHHH-----------HHHHHHhhh--hhCCEEEEEEECCCCCcccCCchHHHH-HHHHHcC---CCeEEEE
Confidence 9999999999532 222222223 26799999987764311 01111112 1233333 2578999
Q ss_pred EEccCCC
Q 005287 205 MTHSSST 211 (704)
Q Consensus 205 LTK~D~l 211 (704)
+||+|+.
T Consensus 148 iNK~Dl~ 154 (426)
T TIGR00483 148 INKMDSV 154 (426)
T ss_pred EEChhcc
Confidence 9999986
No 225
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.70 E-value=7.6e-08 Score=92.65 Aligned_cols=100 Identities=21% Similarity=0.231 Sum_probs=64.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHh
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 160 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik 160 (704)
||++||++|+|||||+++|.|.+... .-|..+.. .+ .+|||||=+- .+..+.+.+....
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~-----~KTq~i~~-----~~---~~IDTPGEyi-------E~~~~y~aLi~ta- 61 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRY-----KKTQAIEY-----YD---NTIDTPGEYI-------ENPRFYHALIVTA- 61 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCc-----CccceeEe-----cc---cEEECChhhe-------eCHHHHHHHHHHH-
Confidence 79999999999999999999976421 12333221 12 5699999762 2234444443222
Q ss_pred cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 161 RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 161 ~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
..+|+|++|.+.+..... .--.+...| .+|+|=|+||+|+.
T Consensus 62 -~dad~V~ll~dat~~~~~-----~pP~fa~~f----~~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 62 -QDADVVLLLQDATEPRSV-----FPPGFASMF----NKPVIGVITKIDLP 102 (143)
T ss_pred -hhCCEEEEEecCCCCCcc-----CCchhhccc----CCCEEEEEECccCc
Confidence 267999999776643321 111122333 48999999999987
No 226
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.67 E-value=4e-08 Score=96.18 Aligned_cols=59 Identities=32% Similarity=0.401 Sum_probs=49.7
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCC
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFL 138 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~ 138 (704)
...++|+++|.+|||||||+|.|++.....++..+++|.....+... ..+.+|||||+.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~~ 171 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS---PGIYLLDTPGIL 171 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec---CCEEEEECCCCC
Confidence 34579999999999999999999998877777778888888776643 568999999983
No 227
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.67 E-value=9.5e-08 Score=106.19 Aligned_cols=88 Identities=23% Similarity=0.227 Sum_probs=61.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEee---------------------Ec---CeEEEEEECC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGS---------------------VN---GIKVTFIDTP 135 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~---------------------~~---G~~v~LIDTP 135 (704)
++|++||.||||||||+|+|++.. +.++.++.+|.++...... .+ ..++.|+|||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~-~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLAD-VEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc-ccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 689999999999999999999986 4556777788766654322 12 2568899999
Q ss_pred CCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEecc
Q 005287 136 GFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLD 174 (704)
Q Consensus 136 Gl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld 174 (704)
|+....... ..+...+...++ .+|++++|++..
T Consensus 81 Gl~~ga~~g----~glg~~fL~~ir--~ad~ll~Vvd~~ 113 (396)
T PRK09602 81 GLVPGAHEG----RGLGNQFLDDLR--QADALIHVVDAS 113 (396)
T ss_pred CcCCCccch----hhHHHHHHHHHH--HCCEEEEEEeCC
Confidence 997653322 223333333343 569999998775
No 228
>PLN00023 GTP-binding protein; Provisional
Probab=98.67 E-value=3.7e-07 Score=98.71 Aligned_cols=124 Identities=16% Similarity=0.116 Sum_probs=71.6
Q ss_pred CCCCeEEEEEeCCCCcHHHHHHHHhCCCCccc-cCCCCccceEEEEEeeE-------------cCeEEEEEECCCCCCcc
Q 005287 76 LDFSIRILVLGKTGVGKSATINSIFDQTKTET-DAFQPATDCIREVKGSV-------------NGIKVTFIDTPGFLPSC 141 (704)
Q Consensus 76 ~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~v-s~~~~tT~~~~~~~~~~-------------~G~~v~LIDTPGl~d~~ 141 (704)
....++|+|+|..|||||||++.+++...... ....+.+.....+.... ....+.|+||+|-...
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf- 96 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY- 96 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh-
Confidence 44568999999999999999999997653221 11111122222222110 1256899999997432
Q ss_pred cchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc----------cccccEEEEEEccCCC
Q 005287 142 VRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT----------AIWFNTILVMTHSSST 211 (704)
Q Consensus 142 ~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~----------~~~k~vIVVLTK~D~l 211 (704)
..+.. .++ ..++++++|.+++.......-...++.+....+. ....++|||.||+|+.
T Consensus 97 -------rsL~~---~yy--r~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~ 164 (334)
T PLN00023 97 -------KDCRS---LFY--SQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIA 164 (334)
T ss_pred -------hhhhH---Hhc--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccc
Confidence 11111 223 2689999998876533111112344444443210 1136899999999986
Q ss_pred C
Q 005287 212 L 212 (704)
Q Consensus 212 ~ 212 (704)
.
T Consensus 165 ~ 165 (334)
T PLN00023 165 P 165 (334)
T ss_pred c
Confidence 4
No 229
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.66 E-value=3.4e-07 Score=90.68 Aligned_cols=113 Identities=17% Similarity=0.161 Sum_probs=66.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCcc-ceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPAT-DCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT-~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
++|+++|.+|||||||++.+++..... ...++. .+........++ ..+.++||+|-... .... .
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~--~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~--------~~~~---~ 67 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDE--DYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREF--------INML---P 67 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCccceEEEEEEEEECCEEEEEEEEeCCCchhH--------HHhh---H
Confidence 589999999999999999998765322 122322 123222334455 56789999997432 1111 1
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCc-HHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 157 KFIRRSPPDIVLYFERLDLISMGFSD-FPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~t~~~~D-~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
.++ ..+|++++|.+++.... ..+ ...+..+... ... ..| |+|.||+|+.
T Consensus 68 ~~~--~~a~~iilv~D~t~~~s-~~~i~~~~~~~~~~-~~~-~~p-ilVgnK~Dl~ 117 (182)
T cd04128 68 LVC--NDAVAILFMFDLTRKST-LNSIKEWYRQARGF-NKT-AIP-ILVGTKYDLF 117 (182)
T ss_pred HHC--cCCCEEEEEEECcCHHH-HHHHHHHHHHHHHh-CCC-CCE-EEEEEchhcc
Confidence 223 36799999987754321 111 1233333332 111 234 7889999986
No 230
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.66 E-value=1.1e-07 Score=102.98 Aligned_cols=87 Identities=21% Similarity=0.194 Sum_probs=61.0
Q ss_pred EEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeE------------------------cCeEEEEEECCCC
Q 005287 82 ILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSV------------------------NGIKVTFIDTPGF 137 (704)
Q Consensus 82 IlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~------------------------~G~~v~LIDTPGl 137 (704)
|++||.||||||||+|+|++.. +.++.++.+|.++......+ .+.++.++||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~-~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLAD-VEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCC-CcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 5799999999999999999876 46677778886655433221 2357999999999
Q ss_pred CCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccC
Q 005287 138 LPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDL 175 (704)
Q Consensus 138 ~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~ 175 (704)
....... ..+...+...++ .+|++++|+++..
T Consensus 80 v~ga~~~----~glg~~fL~~ir--~aD~ii~Vvd~~~ 111 (318)
T cd01899 80 VPGAHEG----KGLGNKFLDDLR--DADALIHVVDASG 111 (318)
T ss_pred CCCccch----hhHHHHHHHHHH--HCCEEEEEEeCCC
Confidence 7653222 223333333444 6699999988754
No 231
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.65 E-value=2.2e-07 Score=108.63 Aligned_cols=114 Identities=16% Similarity=0.090 Sum_probs=72.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccc--cCCCCccceEEEEEee-EcCeEEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTET--DAFQPATDCIREVKGS-VNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~v--s~~~~tT~~~~~~~~~-~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
+.|+++|.+++|||||+|+|+|.+.... ....+.|.+....... .++..+.||||||..+ +...+.
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~-----------fi~~m~ 69 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEK-----------FLSNML 69 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHH-----------HHHHHH
Confidence 3589999999999999999998643222 2223556554433332 2577899999999732 222222
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 157 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
..+ ..+|++++|++++..- ..++...+..+.. +| ..++|+|+||+|+.
T Consensus 70 ~g~--~~~D~~lLVVda~eg~-~~qT~ehl~il~~-lg---i~~iIVVlNKiDlv 117 (614)
T PRK10512 70 AGV--GGIDHALLVVACDDGV-MAQTREHLAILQL-TG---NPMLTVALTKADRV 117 (614)
T ss_pred HHh--hcCCEEEEEEECCCCC-cHHHHHHHHHHHH-cC---CCeEEEEEECCccC
Confidence 233 3689999998776422 1234455544433 23 23468999999986
No 232
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.65 E-value=2.8e-07 Score=91.56 Aligned_cols=115 Identities=17% Similarity=0.128 Sum_probs=70.2
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 155 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~I 155 (704)
..++|+++|.+|||||||++.++...... ...++..........+++ ..+.|+||+|-... ..+.
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~--~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~--------~~~~--- 70 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPE--NYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY--------DNVR--- 70 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCC--ccCCceeeeeEEEEEECCEEEEEEEEECCCchhh--------Hhhh---
Confidence 46899999999999999999998765322 222333222222233444 46889999997322 1111
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCc--HHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 156 KKFIRRSPPDIVLYFERLDLISMGFSD--FPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 156 k~~ik~~~~dvVL~Vi~ld~~t~~~~D--~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
..++ ..+|++++|.+++.... ... ...+..+.+.. ...|+|+|.||.|+.
T Consensus 71 ~~~~--~~ad~~ilvyDit~~~S-f~~~~~~w~~~i~~~~---~~~piilVgNK~DL~ 122 (182)
T cd04172 71 PLSY--PDSDAVLICFDISRPET-LDSVLKKWKGEIQEFC---PNTKMLLVGCKSDLR 122 (182)
T ss_pred hhhc--CCCCEEEEEEECCCHHH-HHHHHHHHHHHHHHHC---CCCCEEEEeEChhhh
Confidence 1122 37899999988765421 111 12334444432 247999999999974
No 233
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.64 E-value=1.8e-08 Score=107.16 Aligned_cols=82 Identities=21% Similarity=0.276 Sum_probs=53.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCC-------CCccceEEEEEeeEcCeEEEEEECCCCCCcccch--hhhhHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAF-------QPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRN--VKRNRK 150 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~-------~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~--~~~n~~ 150 (704)
-.++++|++|||||||||+|+|.....++.. ..+|+....+.....+ .++||||+.+..... ......
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~---~liDtPG~~~~~~~~~~~~~~~~ 238 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGG---LLIDTPGFREFGLLHIDPEELAH 238 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCC---EEEECCCCCccCCccCCHHHHHH
Confidence 5799999999999999999999876654322 2367776666654334 799999997643111 122333
Q ss_pred HHHHHHHHHhcCCC
Q 005287 151 IMLSVKKFIRRSPP 164 (704)
Q Consensus 151 il~~Ik~~ik~~~~ 164 (704)
...++..+...|++
T Consensus 239 ~f~~~~~~~~~C~F 252 (287)
T cd01854 239 YFPEFRELAGQCKF 252 (287)
T ss_pred HhHHHHHHhCCCCC
Confidence 44455555555544
No 234
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.64 E-value=5.8e-08 Score=106.56 Aligned_cols=58 Identities=33% Similarity=0.429 Sum_probs=47.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCC-----ccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCc
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTK-----TETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPS 140 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~-----a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~ 140 (704)
.+|++||.||||||||||+|++... +.++..+++|.....+.. +..+.|+||||+...
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~---~~~~~l~DtPG~~~~ 217 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL---DDGHSLYDTPGIINS 217 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe---CCCCEEEECCCCCCh
Confidence 5899999999999999999998643 456788888988776653 334689999999865
No 235
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.64 E-value=2.9e-07 Score=95.30 Aligned_cols=115 Identities=12% Similarity=0.109 Sum_probs=69.5
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 155 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~I 155 (704)
..++|+++|.+|||||||++.+++..... ...++.-........+++ ..+.|+||||-... ..+..
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~--~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~--------~~~~~-- 79 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPE--TYVPTVFENYTAGLETEEQRVELSLWDTSGSPYY--------DNVRP-- 79 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCC--CcCCceeeeeEEEEEECCEEEEEEEEeCCCchhh--------HHHHH--
Confidence 46899999999999999999998764321 222332221122233344 56889999996321 11111
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCc--HHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 156 KKFIRRSPPDIVLYFERLDLISMGFSD--FPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 156 k~~ik~~~~dvVL~Vi~ld~~t~~~~D--~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
.++ ..+|++++|.+++.... ... ...+..+.+.. ...|+|+|.||.|+.
T Consensus 80 -~~~--~~ad~vIlVyDit~~~S-f~~~~~~w~~~i~~~~---~~~piilVgNK~DL~ 130 (232)
T cd04174 80 -LCY--SDSDAVLLCFDISRPET-VDSALKKWKAEIMDYC---PSTRILLIGCKTDLR 130 (232)
T ss_pred -HHc--CCCcEEEEEEECCChHH-HHHHHHHHHHHHHHhC---CCCCEEEEEECcccc
Confidence 123 37899999988764321 111 12334444332 246899999999974
No 236
>PRK10218 GTP-binding protein; Provisional
Probab=98.63 E-value=2.5e-07 Score=107.84 Aligned_cols=113 Identities=16% Similarity=0.107 Sum_probs=75.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCcccc---------------CCCCccceEEEEEeeEcCeEEEEEECCCCCCcccch
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETD---------------AFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRN 144 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs---------------~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~ 144 (704)
-+|+|+|..++|||||+++|+........ ...+.|.........+.+.++.+|||||..+..
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~--- 82 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG--- 82 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH---
Confidence 48999999999999999999964221110 112345555666677889999999999986542
Q ss_pred hhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 145 VKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 145 ~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
..+..+++ .+|++++|+++.... .......+..+... ..|.|+|+||+|..
T Consensus 83 --------~~v~~~l~--~aDg~ILVVDa~~G~-~~qt~~~l~~a~~~-----gip~IVviNKiD~~ 133 (607)
T PRK10218 83 --------GEVERVMS--MVDSVLLVVDAFDGP-MPQTRFVTKKAFAY-----GLKPIVVINKVDRP 133 (607)
T ss_pred --------HHHHHHHH--hCCEEEEEEecccCc-cHHHHHHHHHHHHc-----CCCEEEEEECcCCC
Confidence 11223443 579999997765321 11333444444332 47889999999975
No 237
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.63 E-value=2.5e-07 Score=107.56 Aligned_cols=114 Identities=16% Similarity=0.113 Sum_probs=68.8
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeE------------------cCeEEEEEECCCCCCc
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSV------------------NGIKVTFIDTPGFLPS 140 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~------------------~G~~v~LIDTPGl~d~ 140 (704)
+..|+++|++|+|||||+|+|.+...... ...+.|.+.-...... ....+.|+||||....
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~-e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKR-EAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccc-cCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 45799999999999999999999864332 1122333211111111 1124899999997432
Q ss_pred ccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 141 CVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 141 ~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
..+. ..+. ..+|++++|++++... ...+...+..+... ..|+|+|+||+|+..
T Consensus 83 --------~~l~---~~~~--~~aD~~IlVvD~~~g~-~~qt~e~i~~l~~~-----~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 83 --------TNLR---KRGG--ALADLAILIVDINEGF-KPQTQEALNILRMY-----KTPFVVAANKIDRIP 135 (590)
T ss_pred --------HHHH---HHHH--hhCCEEEEEEECCcCC-CHhHHHHHHHHHHc-----CCCEEEEEECCCccc
Confidence 1111 1222 2679999998776421 12334444444332 479999999999873
No 238
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.62 E-value=3.7e-07 Score=93.89 Aligned_cols=114 Identities=16% Similarity=0.123 Sum_probs=67.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
++|+|||.+|||||||++.+++..... .+.|+..........+++ ..+.|+||+|-... ..+.. .
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~--~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~--------~~l~~---~ 68 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPG--SYVPTVFENYTASFEIDKRRIELNMWDTSGSSYY--------DNVRP---L 68 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC--ccCCccccceEEEEEECCEEEEEEEEeCCCcHHH--------HHHhH---H
Confidence 789999999999999999999765321 233333222222334444 46788999997422 11111 1
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcH--HHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSDF--PLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D~--~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
+. ..+|++|+|.+++.... .... .+...+.. .. ...|+|+|.||+|+..
T Consensus 69 ~~--~~~d~illvfdis~~~S-f~~i~~~w~~~~~~-~~--~~~piiLVgnK~DL~~ 119 (222)
T cd04173 69 AY--PDSDAVLICFDISRPET-LDSVLKKWQGETQE-FC--PNAKVVLVGCKLDMRT 119 (222)
T ss_pred hc--cCCCEEEEEEECCCHHH-HHHHHHHHHHHHHh-hC--CCCCEEEEEECccccc
Confidence 22 37899999988765421 1111 11112222 11 2479999999999863
No 239
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.62 E-value=3.2e-07 Score=91.22 Aligned_cols=114 Identities=15% Similarity=0.171 Sum_probs=68.0
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
.++|+++|.+|||||||++.+....... ...++.-........+++ ..+.|+||||-... ..+. .
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~--------~~l~---~ 69 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPK--EYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEY--------DRLR---T 69 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCc--CCCCceEeeeEEEEEECCEEEEEEEEECCCchhh--------hhhh---h
Confidence 4899999999999999999998754221 122222221121223444 56789999998432 1111 1
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcH--HHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 157 KFIRRSPPDIVLYFERLDLISMGFSDF--PLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~t~~~~D~--~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
.+. ..+|++++|.+++.... .... .....+... ....|+++|.||.|+.
T Consensus 70 ~~~--~~a~~~ilvydit~~~S-f~~~~~~w~~~i~~~---~~~~piilvgNK~DL~ 120 (191)
T cd01875 70 LSY--PQTNVFIICFSIASPSS-YENVRHKWHPEVCHH---CPNVPILLVGTKKDLR 120 (191)
T ss_pred hhc--cCCCEEEEEEECCCHHH-HHHHHHHHHHHHHhh---CCCCCEEEEEeChhhh
Confidence 122 36899999987765431 1111 122223222 1247999999999975
No 240
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=98.62 E-value=2e-07 Score=88.54 Aligned_cols=115 Identities=19% Similarity=0.148 Sum_probs=71.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCccccCCCCcc-ceEEEEEeeEcCe--EEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTETDAFQPAT-DCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT-~~~~~~~~~~~G~--~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
+|+|+|.+|||||||++++.+..... ...++. .+........++. .+.|+||+|.... ..... .
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~--------~~~~~---~ 67 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPE--NYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERF--------DSLRD---I 67 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTS--SSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGG--------HHHHH---H
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccc--ccccccccccccccccccccccccccccccccccc--------ccccc---c
Confidence 69999999999999999998765322 222322 3344444445454 5889999996322 11111 1
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
++ ...|++++|.+++....-..-..++..+..... ...|+++|.||.|...
T Consensus 68 ~~--~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~--~~~~iivvg~K~D~~~ 118 (162)
T PF00071_consen 68 FY--RNSDAIIIVFDVTDEESFENLKKWLEEIQKYKP--EDIPIIVVGNKSDLSD 118 (162)
T ss_dssp HH--TTESEEEEEEETTBHHHHHTHHHHHHHHHHHST--TTSEEEEEEETTTGGG
T ss_pred cc--ccccccccccccccccccccccccccccccccc--ccccceeeeccccccc
Confidence 22 367999999877654311122245555555543 2368999999999764
No 241
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.61 E-value=4.4e-07 Score=90.92 Aligned_cols=118 Identities=19% Similarity=0.112 Sum_probs=70.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEc-CeEEEEEECCCCCCcccchhhhhHHHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVN-GIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 158 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~-G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ 158 (704)
++|+++|..|||||||+|++.+...........++........... ..++.++||+|..+. ..++. .+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~--------~~~~~---~y 74 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEY--------RSLRP---EY 74 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHH--------HHHHH---HH
Confidence 8999999999999999999998876544322112222222221111 456899999999432 22222 22
Q ss_pred HhcCCCCEEEEEEeccCccC-CCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 159 IRRSPPDIVLYFERLDLISM-GFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 159 ik~~~~dvVL~Vi~ld~~t~-~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
. .+++++++|.+...... ...-......+....+ ...++++|.||+|+..
T Consensus 75 ~--~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~--~~~~iilv~nK~Dl~~ 125 (219)
T COG1100 75 Y--RGANGILIVYDSTLRESSDELTEEWLEELRELAP--DDVPILLVGNKIDLFD 125 (219)
T ss_pred h--cCCCEEEEEEecccchhhhHHHHHHHHHHHHhCC--CCceEEEEeccccccc
Confidence 2 27788888876554221 1111222333333221 2479999999999884
No 242
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.61 E-value=9e-07 Score=99.91 Aligned_cols=118 Identities=18% Similarity=0.119 Sum_probs=74.0
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCcc------------------------c-c-----CCCCccceEEEEEeeEcC
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTE------------------------T-D-----AFQPATDCIREVKGSVNG 126 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~------------------------v-s-----~~~~tT~~~~~~~~~~~G 126 (704)
...++|+++|..++|||||+..|+...... + + ...+.|.+.....+..++
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 346899999999999999999986421100 0 0 112456666666677889
Q ss_pred eEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccC------CCCcHHHHHHHHHHhccccccc
Q 005287 127 IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISM------GFSDFPLLKLMTEVFGTAIWFN 200 (704)
Q Consensus 127 ~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~------~~~D~~lLk~L~~~fG~~~~k~ 200 (704)
..++||||||..+ ....+...+ ..+|++++|++...--. ..+..+.+..+.. +| -++
T Consensus 85 ~~i~lIDtPGh~~-----------f~~~~~~g~--~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~-~g---i~~ 147 (446)
T PTZ00141 85 YYFTIIDAPGHRD-----------FIKNMITGT--SQADVAILVVASTAGEFEAGISKDGQTREHALLAFT-LG---VKQ 147 (446)
T ss_pred eEEEEEECCChHH-----------HHHHHHHhh--hhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH-cC---CCe
Confidence 9999999999632 222333333 36799999987653210 1133344443332 22 235
Q ss_pred EEEEEEccCCC
Q 005287 201 TILVMTHSSST 211 (704)
Q Consensus 201 vIVVLTK~D~l 211 (704)
+|+++||+|..
T Consensus 148 iiv~vNKmD~~ 158 (446)
T PTZ00141 148 MIVCINKMDDK 158 (446)
T ss_pred EEEEEEccccc
Confidence 78999999953
No 243
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.61 E-value=3.6e-07 Score=93.91 Aligned_cols=110 Identities=21% Similarity=0.288 Sum_probs=68.5
Q ss_pred CCCCeEEEEEeCCCCcHHHHHHHHhCCCCc-cccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 76 LDFSIRILVLGKTGVGKSATINSIFDQTKT-ETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 76 ~~~~lrIlVVGkTGvGKSTLINsLlG~~~a-~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
...+..|+|+|.+|+|||||+|+|++.... ..+...+ | + .. ....+.++.++||||.. ..+...
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g-~--i-~i-~~~~~~~i~~vDtPg~~----------~~~l~~ 100 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKG-P--I-TV-VTGKKRRLTFIECPNDI----------NAMIDI 100 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccc-c--E-EE-EecCCceEEEEeCCchH----------HHHHHH
Confidence 345688999999999999999999986322 2222222 1 1 11 22367899999999752 122222
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccE-EEEEEccCCCC
Q 005287 155 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNT-ILVMTHSSSTL 212 (704)
Q Consensus 155 Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~v-IVVLTK~D~l~ 212 (704)
++ .+|++++|++....- ...+..++..+... ..|. |+|+||+|...
T Consensus 101 ----ak--~aDvVllviDa~~~~-~~~~~~i~~~l~~~-----g~p~vi~VvnK~D~~~ 147 (225)
T cd01882 101 ----AK--VADLVLLLIDASFGF-EMETFEFLNILQVH-----GFPRVMGVLTHLDLFK 147 (225)
T ss_pred ----HH--hcCEEEEEEecCcCC-CHHHHHHHHHHHHc-----CCCeEEEEEeccccCC
Confidence 22 569999997764321 12344555555443 2564 55999999873
No 244
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.60 E-value=4.2e-07 Score=104.48 Aligned_cols=116 Identities=11% Similarity=0.037 Sum_probs=71.8
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCcc--ccCCC-------------------CccceEEEEEeeEcCeEEEEEECC
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTE--TDAFQ-------------------PATDCIREVKGSVNGIKVTFIDTP 135 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~--vs~~~-------------------~tT~~~~~~~~~~~G~~v~LIDTP 135 (704)
....+|+|+|.+|+|||||+++|+-...++ .+... +.|-........+.+.++.|+|||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 345799999999999999999986322111 11110 122233445567789999999999
Q ss_pred CCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 136 GFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 136 Gl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
|..+.. ..+.+++. .+|++++|++.... .......+++.... ...|+|+++||+|..
T Consensus 89 G~~df~-----------~~~~~~l~--~aD~aIlVvDa~~g-v~~~t~~l~~~~~~-----~~~PiivviNKiD~~ 145 (527)
T TIGR00503 89 GHEDFS-----------EDTYRTLT--AVDNCLMVIDAAKG-VETRTRKLMEVTRL-----RDTPIFTFMNKLDRD 145 (527)
T ss_pred ChhhHH-----------HHHHHHHH--hCCEEEEEEECCCC-CCHHHHHHHHHHHh-----cCCCEEEEEECcccc
Confidence 995331 12223343 56999999776532 11122233332222 247999999999975
No 245
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.60 E-value=4.5e-07 Score=91.98 Aligned_cols=118 Identities=14% Similarity=0.052 Sum_probs=68.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCcc---ceEEEEEee---E--cCeEEEEEECCCCCCcccchhhhhHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPAT---DCIREVKGS---V--NGIKVTFIDTPGFLPSCVRNVKRNRKI 151 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT---~~~~~~~~~---~--~G~~v~LIDTPGl~d~~~~~~~~n~~i 151 (704)
++|+++|.+|||||||++.+++...... ..++. .....+... . ....+.|+||+|-... ..+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~--~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~--------~~l 70 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGR--PSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESV--------KST 70 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCC--CCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhH--------HHH
Confidence 4899999999999999999998653322 11211 112222211 0 1246889999998432 111
Q ss_pred HHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhc-----------------ccccccEEEEEEccCCCC
Q 005287 152 MLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFG-----------------TAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 152 l~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG-----------------~~~~k~vIVVLTK~D~l~ 212 (704)
. ..++ ..+|++++|.+++....-..-...+..+...-+ .....|+|+|-||.|+..
T Consensus 71 ~---~~~y--r~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~ 143 (202)
T cd04102 71 R---AVFY--NQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP 143 (202)
T ss_pred H---HHHh--CcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh
Confidence 1 1233 268999999887654310111223333433210 112479999999999863
No 246
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.59 E-value=3.1e-07 Score=107.02 Aligned_cols=112 Identities=16% Similarity=0.147 Sum_probs=69.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCcccc--------C------CCCccceEEEEEeeE---cC--eEEEEEECCCCCCcc
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTETD--------A------FQPATDCIREVKGSV---NG--IKVTFIDTPGFLPSC 141 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~vs--------~------~~~tT~~~~~~~~~~---~G--~~v~LIDTPGl~d~~ 141 (704)
+|+++|..|+|||||+++|+........ + ..+.|.........+ ++ ..+.||||||..+..
T Consensus 5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~ 84 (595)
T TIGR01393 5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 84 (595)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHH
Confidence 7999999999999999999875322211 0 123444444444433 22 678999999996531
Q ss_pred cchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 142 VRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 142 ~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
..+.++++ .+|++++|+++...-. ......+....+ ...|+|+|+||+|+.
T Consensus 85 -----------~~v~~~l~--~aD~aILVvDat~g~~-~qt~~~~~~~~~-----~~ipiIiViNKiDl~ 135 (595)
T TIGR01393 85 -----------YEVSRSLA--ACEGALLLVDAAQGIE-AQTLANVYLALE-----NDLEIIPVINKIDLP 135 (595)
T ss_pred -----------HHHHHHHH--hCCEEEEEecCCCCCC-HhHHHHHHHHHH-----cCCCEEEEEECcCCC
Confidence 12334444 5699999977653211 122222222222 246899999999974
No 247
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.58 E-value=4.3e-07 Score=89.66 Aligned_cols=113 Identities=14% Similarity=0.137 Sum_probs=66.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
.+|+|+|.+|+|||||+|.|....... ...+++...........+ ..+.++||||...... . .. .
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~--------~-~~--~ 68 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPE--EYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYER--------L-RP--L 68 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc--ccCCcccceEEEEEEECCEEEEEEEEECCCChhccc--------c-ch--h
Confidence 589999999999999999998543222 122222222222233344 4578999999753311 0 00 1
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcH--HHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSDF--PLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D~--~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
++ ..+|++++|..++.... ..+. ..+..+.... ...|+|+|.||+|+.
T Consensus 69 ~~--~~a~~~llv~~i~~~~s-~~~~~~~~~~~i~~~~---~~~piilvgnK~Dl~ 118 (187)
T cd04129 69 SY--SKAHVILIGFAVDTPDS-LENVRTKWIEEVRRYC---PNVPVILVGLKKDLR 118 (187)
T ss_pred hc--CCCCEEEEEEECCCHHH-HHHHHHHHHHHHHHhC---CCCCEEEEeeChhhh
Confidence 12 36799999877764321 1111 2344444332 248999999999975
No 248
>PRK13351 elongation factor G; Reviewed
Probab=98.56 E-value=4.7e-07 Score=107.23 Aligned_cols=115 Identities=13% Similarity=0.042 Sum_probs=74.5
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccc--cC---------------CCCccceEEEEEeeEcCeEEEEEECCCCCCc
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTET--DA---------------FQPATDCIREVKGSVNGIKVTFIDTPGFLPS 140 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~v--s~---------------~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~ 140 (704)
.-.+|+|+|..|+|||||+++|+....... +. ..+.|.........+.+..+.||||||..+.
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df 86 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF 86 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence 346999999999999999999985321110 00 1233444445566778999999999998543
Q ss_pred ccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 141 CVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 141 ~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
. .....+++ .+|++++|++...... .....++..+... ..|+++|+||+|..
T Consensus 87 ~-----------~~~~~~l~--~aD~~ilVvd~~~~~~-~~~~~~~~~~~~~-----~~p~iiviNK~D~~ 138 (687)
T PRK13351 87 T-----------GEVERSLR--VLDGAVVVFDAVTGVQ-PQTETVWRQADRY-----GIPRLIFINKMDRV 138 (687)
T ss_pred H-----------HHHHHHHH--hCCEEEEEEeCCCCCC-HHHHHHHHHHHhc-----CCCEEEEEECCCCC
Confidence 1 12233443 5699999977654321 1233444444332 47999999999976
No 249
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.56 E-value=3.5e-07 Score=90.00 Aligned_cols=115 Identities=17% Similarity=0.170 Sum_probs=77.9
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
....+|+++|..||||||++|.|.......+ ..|...........+..+.++|.+|-... ...++
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~----~pT~g~~~~~i~~~~~~~~~~d~gG~~~~--------~~~w~--- 76 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISET----IPTIGFNIEEIKYKGYSLTIWDLGGQESF--------RPLWK--- 76 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEEE----EEESSEEEEEEEETTEEEEEEEESSSGGG--------GGGGG---
T ss_pred CcEEEEEEECCCccchHHHHHHhhhcccccc----CcccccccceeeeCcEEEEEEeccccccc--------cccce---
Confidence 4579999999999999999999987653332 22444555556678999999999986322 11121
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccc--ccccEEEEEEccCCC
Q 005287 157 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA--IWFNTILVMTHSSST 211 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~--~~k~vIVVLTK~D~l 211 (704)
.++. .+|+++||++...... -....+.|.+.+... ...|++|++||.|..
T Consensus 77 ~y~~--~~~~iIfVvDssd~~~---l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~ 128 (175)
T PF00025_consen 77 SYFQ--NADGIIFVVDSSDPER---LQEAKEELKELLNDPELKDIPILILANKQDLP 128 (175)
T ss_dssp GGHT--TESEEEEEEETTGGGG---HHHHHHHHHHHHTSGGGTTSEEEEEEESTTST
T ss_pred eecc--ccceeEEEEeccccee---ecccccchhhhcchhhcccceEEEEecccccc
Confidence 2232 6799999987654321 223455555555432 258999999999965
No 250
>PTZ00416 elongation factor 2; Provisional
Probab=98.55 E-value=5.6e-07 Score=108.69 Aligned_cols=114 Identities=13% Similarity=0.085 Sum_probs=73.4
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCcc---------------ceEEEEEeeEc----------CeEEEEEE
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPAT---------------DCIREVKGSVN----------GIKVTFID 133 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT---------------~~~~~~~~~~~----------G~~v~LID 133 (704)
--+|+|+|..++|||||+++|+...........+.| -....+...+. +..+.|+|
T Consensus 19 irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liD 98 (836)
T PTZ00416 19 IRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLID 98 (836)
T ss_pred cCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEc
Confidence 349999999999999999999875443322112222 12111222332 56799999
Q ss_pred CCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 134 TPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 134 TPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
|||..+. ..++...++ .+|++++|++.... .......+++.+.+. ..|.|+++||+|..
T Consensus 99 tPG~~~f-----------~~~~~~al~--~~D~ailVvda~~g-~~~~t~~~~~~~~~~-----~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 99 SPGHVDF-----------SSEVTAALR--VTDGALVVVDCVEG-VCVQTETVLRQALQE-----RIRPVLFINKVDRA 157 (836)
T ss_pred CCCHHhH-----------HHHHHHHHh--cCCeEEEEEECCCC-cCccHHHHHHHHHHc-----CCCEEEEEEChhhh
Confidence 9999653 222334443 57999999876532 122455666665543 47999999999986
No 251
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.55 E-value=4.2e-07 Score=89.89 Aligned_cols=114 Identities=16% Similarity=0.119 Sum_probs=70.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
++|+++|.+|||||||++.+...... . ...++...........++ .++.|+||+|-.... .+. ..
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~-~-~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~--------~~~---~~ 68 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFP-T-DYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYN--------RLR---PL 68 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCC-C-CCCCcceeeeEEEEEECCEEEEEEEEECCCCcccc--------ccc---hh
Confidence 68999999999999999999975532 1 223333222222233444 577899999975431 111 11
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCc--HHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSD--FPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D--~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
++ ..+|++++|.+++.... ... ...+..+... . ...|+|+|-||.|+..
T Consensus 69 ~~--~~a~~~ilvyd~~~~~S-f~~~~~~w~~~i~~~-~--~~~piilvgnK~Dl~~ 119 (176)
T cd04133 69 SY--RGADVFVLAFSLISRAS-YENVLKKWVPELRHY-A--PNVPIVLVGTKLDLRD 119 (176)
T ss_pred hc--CCCcEEEEEEEcCCHHH-HHHHHHHHHHHHHHh-C--CCCCEEEEEeChhhcc
Confidence 33 27799999988765431 112 1233334332 1 2479999999999863
No 252
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.52 E-value=1.1e-06 Score=88.82 Aligned_cols=119 Identities=10% Similarity=0.006 Sum_probs=64.6
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHh-CCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIF-DQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSV 155 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLl-G~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~I 155 (704)
...++|+++|++|||||||+|.++ |..........+.......+........+.++||||-... ..+.
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~--------~~~~--- 75 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKF--------GGLR--- 75 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhh--------hhhh---
Confidence 346899999999999999997654 4322111111111111111222224468899999996322 1111
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 156 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 156 k~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
..+.. ..+++++|.++.....-..-...+..+.+.. ...|+++|.||+|+.
T Consensus 76 ~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~i~lv~nK~Dl~ 126 (215)
T PTZ00132 76 DGYYI--KGQCAIIMFDVTSRITYKNVPNWHRDIVRVC---ENIPIVLVGNKVDVK 126 (215)
T ss_pred HHHhc--cCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccCc
Confidence 12222 5688998977653221001112233333332 236888999999975
No 253
>PRK00098 GTPase RsgA; Reviewed
Probab=98.51 E-value=2.9e-07 Score=98.59 Aligned_cols=84 Identities=18% Similarity=0.231 Sum_probs=53.8
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCC-------CccceEEEEEeeEcCeEEEEEECCCCCCcccch--hhhhH
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQ-------PATDCIREVKGSVNGIKVTFIDTPGFLPSCVRN--VKRNR 149 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~-------~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~--~~~n~ 149 (704)
.-.++++|++|||||||||+|+|.....++.+. .+|+....+..... ..|+||||+....... ...-.
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~~~~~~~~~~~~~ 240 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSSFGLHDLEAEELE 240 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCccCCCCCCHHHHH
Confidence 347899999999999999999998776654443 36766666554323 3899999998643321 01223
Q ss_pred HHHHHHHHHHhcCCCC
Q 005287 150 KIMLSVKKFIRRSPPD 165 (704)
Q Consensus 150 ~il~~Ik~~ik~~~~d 165 (704)
.....+..+...|++.
T Consensus 241 ~~f~~~~~~~~~c~f~ 256 (298)
T PRK00098 241 HYFPEFRPLSGDCKFR 256 (298)
T ss_pred HHHHHHHHHhCCCCCC
Confidence 3344444444444433
No 254
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.51 E-value=8.9e-07 Score=101.85 Aligned_cols=116 Identities=9% Similarity=0.024 Sum_probs=71.3
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCc--cccCCC-------------------CccceEEEEEeeEcCeEEEEEECC
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKT--ETDAFQ-------------------PATDCIREVKGSVNGIKVTFIDTP 135 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a--~vs~~~-------------------~tT~~~~~~~~~~~G~~v~LIDTP 135 (704)
...-+|+|+|.+|+|||||+++|+..... ..+... +.|-......+.+++.++.+||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 34569999999999999999999732211 111111 112223334567789999999999
Q ss_pred CCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 136 GFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 136 Gl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
|..+.. .. ..+++. .+|++++|++....- ......+++.... ...|+++++||+|..
T Consensus 88 G~~df~-------~~----~~~~l~--~aD~aIlVvDa~~gv-~~~t~~l~~~~~~-----~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 88 GHEDFS-------ED----TYRTLT--AVDSALMVIDAAKGV-EPQTRKLMEVCRL-----RDTPIFTFINKLDRD 144 (526)
T ss_pred CchhhH-------HH----HHHHHH--HCCEEEEEEecCCCC-CHHHHHHHHHHHh-----cCCCEEEEEECCccc
Confidence 985431 11 223333 569999997764321 1122233333222 257999999999965
No 255
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.51 E-value=6.7e-07 Score=86.47 Aligned_cols=109 Identities=19% Similarity=0.213 Sum_probs=66.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
++|+++|.+|||||||++.++....... ..+ |.........++| ..+.++||+|-... .
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~--~~~-~~~~~~~~i~~~~~~~~l~i~D~~g~~~~----------------~ 61 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQL--ESP-EGGRFKKEVLVDGQSHLLLIRDEGGAPDA----------------Q 61 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCC--CCC-CccceEEEEEECCEEEEEEEEECCCCCch----------------h
Confidence 4799999999999999998876532211 112 2211122345566 45889999998421 1
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCc-HHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSD-FPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D-~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
+. ..+|++++|.+++.... ... ...+..+....+ ....|+++|.||.|+.
T Consensus 62 ~~--~~~~~~ilv~d~~~~~s-f~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~ 112 (158)
T cd04103 62 FA--SWVDAVIFVFSLENEAS-FQTVYNLYHQLSSYRN-ISEIPLILVGTQDAIS 112 (158)
T ss_pred HH--hcCCEEEEEEECCCHHH-HHHHHHHHHHHHHhcC-CCCCCEEEEeeHHHhh
Confidence 12 25699999987765431 112 234444443321 1246899999999864
No 256
>PRK13796 GTPase YqeH; Provisional
Probab=98.50 E-value=1.3e-07 Score=103.97 Aligned_cols=59 Identities=31% Similarity=0.366 Sum_probs=46.6
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCC-----CccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCc
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQT-----KTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPS 140 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~-----~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~ 140 (704)
..+++|||.||||||||||+|++.. ...++..++||++...+... + ...++||||+...
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~-~--~~~l~DTPGi~~~ 223 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLD-D--GSFLYDTPGIIHR 223 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcC-C--CcEEEECCCcccc
Confidence 3589999999999999999998642 34467889999998877642 2 2489999999644
No 257
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.48 E-value=9.4e-07 Score=98.52 Aligned_cols=118 Identities=14% Similarity=0.091 Sum_probs=67.9
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccc--cCCCCccceEEE----------------EEe----------eEcCeEE
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTET--DAFQPATDCIRE----------------VKG----------SVNGIKV 129 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~v--s~~~~tT~~~~~----------------~~~----------~~~G~~v 129 (704)
..++|+++|..++|||||+++|.+...... ....+.|..... +.. ...+..+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 468999999999999999999987421110 000111211110 000 0125689
Q ss_pred EEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccC
Q 005287 130 TFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSS 209 (704)
Q Consensus 130 ~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D 209 (704)
.+|||||..+ ....+.... ..+|++++|++++......+....+..+ ..++ .+++|+|+||+|
T Consensus 83 ~liDtPGh~~-----------f~~~~~~g~--~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~g---i~~iIVvvNK~D 145 (406)
T TIGR03680 83 SFVDAPGHET-----------LMATMLSGA--ALMDGALLVIAANEPCPQPQTKEHLMAL-EIIG---IKNIVIVQNKID 145 (406)
T ss_pred EEEECCCHHH-----------HHHHHHHHH--HHCCEEEEEEECCCCccccchHHHHHHH-HHcC---CCeEEEEEEccc
Confidence 9999999732 122222222 2579999998776421112333444433 3332 257899999999
Q ss_pred CCC
Q 005287 210 STL 212 (704)
Q Consensus 210 ~l~ 212 (704)
+..
T Consensus 146 l~~ 148 (406)
T TIGR03680 146 LVS 148 (406)
T ss_pred cCC
Confidence 873
No 258
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.48 E-value=1.1e-06 Score=102.26 Aligned_cols=114 Identities=16% Similarity=0.169 Sum_probs=67.6
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeE------cC------------eEEEEEECCCCCC
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSV------NG------------IKVTFIDTPGFLP 139 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~------~G------------~~v~LIDTPGl~d 139 (704)
++..|+++|++|+|||||+|+|.+....... ....|.+.-...... .+ ..++|+||||..+
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~-~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKE-AGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCC-CCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 4568999999999999999999887543221 112232211111000 00 1278999999854
Q ss_pred cccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 140 SCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 140 ~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
.. ... .+.. ..+|++++|++++..- .......+..+.. ...|+++++||+|+.
T Consensus 84 f~--------~~~---~~~~--~~aD~~IlVvDa~~g~-~~qt~e~i~~~~~-----~~vpiIvviNK~D~~ 136 (586)
T PRK04004 84 FT--------NLR---KRGG--ALADIAILVVDINEGF-QPQTIEAINILKR-----RKTPFVVAANKIDRI 136 (586)
T ss_pred HH--------HHH---HHhH--hhCCEEEEEEECCCCC-CHhHHHHHHHHHH-----cCCCEEEEEECcCCc
Confidence 31 111 1222 2579999998775421 1233444444433 247899999999975
No 259
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.46 E-value=1.6e-06 Score=104.92 Aligned_cols=115 Identities=14% Similarity=0.087 Sum_probs=72.7
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCcc---------------ceEEEEEeeE----------------cCe
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPAT---------------DCIREVKGSV----------------NGI 127 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT---------------~~~~~~~~~~----------------~G~ 127 (704)
-.+|+|+|+.++|||||+++|+.....+.....+.| -....+...+ .+.
T Consensus 19 Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
T PLN00116 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNEY 98 (843)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCce
Confidence 358999999999999999999866543332222222 1222222222 267
Q ss_pred EEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEc
Q 005287 128 KVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTH 207 (704)
Q Consensus 128 ~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK 207 (704)
.+.||||||..+. ..++...++ .+|++++|++.... .......+++.+... ..|.|+++||
T Consensus 99 ~inliDtPGh~dF-----------~~e~~~al~--~~D~ailVvda~~G-v~~~t~~~~~~~~~~-----~~p~i~~iNK 159 (843)
T PLN00116 99 LINLIDSPGHVDF-----------SSEVTAALR--ITDGALVVVDCIEG-VCVQTETVLRQALGE-----RIRPVLTVNK 159 (843)
T ss_pred EEEEECCCCHHHH-----------HHHHHHHHh--hcCEEEEEEECCCC-CcccHHHHHHHHHHC-----CCCEEEEEEC
Confidence 8899999999543 222333443 56999988765432 112344555555443 4799999999
Q ss_pred cCCCC
Q 005287 208 SSSTL 212 (704)
Q Consensus 208 ~D~l~ 212 (704)
+|...
T Consensus 160 ~D~~~ 164 (843)
T PLN00116 160 MDRCF 164 (843)
T ss_pred Ccccc
Confidence 99874
No 260
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.45 E-value=3.9e-07 Score=87.37 Aligned_cols=58 Identities=29% Similarity=0.312 Sum_probs=46.4
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCC
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGF 137 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl 137 (704)
....+++++|.+|+||||++|.|.+.....+++..++|+..+.+.. +..+.|+||||+
T Consensus 99 ~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~DtpGi 156 (156)
T cd01859 99 GKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKI---TSKIYLLDTPGV 156 (156)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEc---CCCEEEEECcCC
Confidence 3467899999999999999999999887777777777766553332 346899999996
No 261
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.45 E-value=1.5e-06 Score=101.55 Aligned_cols=113 Identities=17% Similarity=0.119 Sum_probs=68.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccc---------c-----CCCCccceEEEEEeeEc-----CeEEEEEECCCCCCc
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTET---------D-----AFQPATDCIREVKGSVN-----GIKVTFIDTPGFLPS 140 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~v---------s-----~~~~tT~~~~~~~~~~~-----G~~v~LIDTPGl~d~ 140 (704)
-+|+|+|..++|||||+++|+....... + ...+.|-........+. +..+.||||||..+.
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF 87 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF 87 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence 4899999999999999999976422111 0 01233444433333332 568999999999654
Q ss_pred ccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 141 CVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 141 ~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
. ..+.++++ .+|++++|+++...-. ..+...+..+.. ...|+|+|+||+|+.
T Consensus 88 ~-----------~~v~~sl~--~aD~aILVVDas~gv~-~qt~~~~~~~~~-----~~lpiIvViNKiDl~ 139 (600)
T PRK05433 88 S-----------YEVSRSLA--ACEGALLVVDASQGVE-AQTLANVYLALE-----NDLEIIPVLNKIDLP 139 (600)
T ss_pred H-----------HHHHHHHH--HCCEEEEEEECCCCCC-HHHHHHHHHHHH-----CCCCEEEEEECCCCC
Confidence 1 12334443 4689999977653211 122222222221 246899999999975
No 262
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.44 E-value=1.5e-06 Score=97.22 Aligned_cols=122 Identities=13% Similarity=0.091 Sum_probs=69.6
Q ss_pred CCCCCCeEEEEEeCCCCcHHHHHHHHhCCCCccc--cCCCCccceEEE----------------EEee--E---c-----
Q 005287 74 PDLDFSIRILVLGKTGVGKSATINSIFDQTKTET--DAFQPATDCIRE----------------VKGS--V---N----- 125 (704)
Q Consensus 74 ~~~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~v--s~~~~tT~~~~~----------------~~~~--~---~----- 125 (704)
+.....++|+++|..++|||||+.+|.+...... ....+.|..... +... . +
T Consensus 4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (411)
T PRK04000 4 EKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETEL 83 (411)
T ss_pred ccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccc
Confidence 4456679999999999999999999977421110 001223322211 0000 0 0
Q ss_pred CeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEE
Q 005287 126 GIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVM 205 (704)
Q Consensus 126 G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVL 205 (704)
...+.|+||||..+ +...+...+ ..+|++++|+++............+..+.. .+ .+++++|+
T Consensus 84 ~~~i~liDtPG~~~-----------f~~~~~~~~--~~~D~~llVVDa~~~~~~~~t~~~l~~l~~-~~---i~~iiVVl 146 (411)
T PRK04000 84 LRRVSFVDAPGHET-----------LMATMLSGA--ALMDGAILVIAANEPCPQPQTKEHLMALDI-IG---IKNIVIVQ 146 (411)
T ss_pred ccEEEEEECCCHHH-----------HHHHHHHHH--hhCCEEEEEEECCCCCCChhHHHHHHHHHH-cC---CCcEEEEE
Confidence 26899999999521 222222222 257999999877642111233344444432 22 24789999
Q ss_pred EccCCCC
Q 005287 206 THSSSTL 212 (704)
Q Consensus 206 TK~D~l~ 212 (704)
||+|+..
T Consensus 147 NK~Dl~~ 153 (411)
T PRK04000 147 NKIDLVS 153 (411)
T ss_pred Eeecccc
Confidence 9999873
No 263
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.43 E-value=9.2e-07 Score=105.34 Aligned_cols=115 Identities=14% Similarity=0.078 Sum_probs=70.8
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCcc---------ccCC------CCccceEEE----EEeeEcCeEEEEEECCCCCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTE---------TDAF------QPATDCIRE----VKGSVNGIKVTFIDTPGFLP 139 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~---------vs~~------~~tT~~~~~----~~~~~~G~~v~LIDTPGl~d 139 (704)
-.+|+++|..|+|||||++.|+.....+ ..++ .+.|..... ....+.+..+.||||||..+
T Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~ 98 (720)
T TIGR00490 19 IRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVD 98 (720)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccc
Confidence 4699999999999999999997431111 0011 122332221 22455678999999999976
Q ss_pred cccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 140 SCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 140 ~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
.. . .+...++ .+|++++|++.... ....+..+++.+.+. ..|.++++||+|...
T Consensus 99 f~-------~----~~~~al~--~aD~~llVvda~~g-~~~~t~~~~~~~~~~-----~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 99 FG-------G----DVTRAMR--AVDGAIVVVCAVEG-VMPQTETVLRQALKE-----NVKPVLFINKVDRLI 152 (720)
T ss_pred cH-------H----HHHHHHH--hcCEEEEEEecCCC-CCccHHHHHHHHHHc-----CCCEEEEEEChhccc
Confidence 31 1 1223343 56999999865432 112344455444332 367889999999873
No 264
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.42 E-value=1.4e-06 Score=91.48 Aligned_cols=126 Identities=16% Similarity=0.143 Sum_probs=79.4
Q ss_pred CCCCeEEEEEeCCCCcHHHHHHHHhCCCCccc-cC-CCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHH
Q 005287 76 LDFSIRILVLGKTGVGKSATINSIFDQTKTET-DA-FQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIML 153 (704)
Q Consensus 76 ~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~v-s~-~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~ 153 (704)
.+...+++++|.+|||||||||.++-.....- +. -++-|+... .-.-|..+++||.||++...... +.....-.
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in---~f~v~~~~~~vDlPG~~~a~y~~-~~~~d~~~ 208 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAIN---HFHVGKSWYEVDLPGYGRAGYGF-ELPADWDK 208 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeee---eeeccceEEEEecCCcccccCCc-cCcchHhH
Confidence 35568999999999999999999997654433 22 333344333 33458899999999976544332 22223333
Q ss_pred HHHHHHhcC--CCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 154 SVKKFIRRS--PPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 154 ~Ik~~ik~~--~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
..+.++... -..++|+++ .+. .....|...+.++.+. ..|..+||||+|...
T Consensus 209 ~t~~Y~leR~nLv~~FLLvd-~sv-~i~~~D~~~i~~~ge~-----~VP~t~vfTK~DK~k 262 (320)
T KOG2486|consen 209 FTKSYLLERENLVRVFLLVD-ASV-PIQPTDNPEIAWLGEN-----NVPMTSVFTKCDKQK 262 (320)
T ss_pred hHHHHHHhhhhhheeeeeee-ccC-CCCCCChHHHHHHhhc-----CCCeEEeeehhhhhh
Confidence 333333221 233445553 222 2234677788888776 589999999999773
No 265
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.42 E-value=5.3e-06 Score=92.99 Aligned_cols=121 Identities=12% Similarity=0.109 Sum_probs=75.7
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHh------CCCCcccc--CCCCcc--------ce----EEEEEee--------------
Q 005287 78 FSIRILVLGKTGVGKSATINSIF------DQTKTETD--AFQPAT--------DC----IREVKGS-------------- 123 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLl------G~~~a~vs--~~~~tT--------~~----~~~~~~~-------------- 123 (704)
.+-.|+++|.+||||||++..|. |..+..++ .+.+.. .. +......
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 45789999999999999999997 55544442 222111 00 1110000
Q ss_pred -EcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEE
Q 005287 124 -VNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTI 202 (704)
Q Consensus 124 -~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vI 202 (704)
..+..++||||||.... +...+.++.+......|+.+++|++.. .. ......++.+.+.. ....
T Consensus 179 ~~~~~DvViIDTaGr~~~-------d~~lm~El~~i~~~~~p~e~lLVlda~--~G-q~a~~~a~~F~~~~-----~~~g 243 (429)
T TIGR01425 179 KKENFDIIIVDTSGRHKQ-------EDSLFEEMLQVAEAIQPDNIIFVMDGS--IG-QAAEAQAKAFKDSV-----DVGS 243 (429)
T ss_pred HhCCCCEEEEECCCCCcc-------hHHHHHHHHHHhhhcCCcEEEEEeccc--cC-hhHHHHHHHHHhcc-----CCcE
Confidence 02678999999997543 244566666665556789999996543 21 23444555555442 4678
Q ss_pred EEEEccCCCCC
Q 005287 203 LVMTHSSSTLP 213 (704)
Q Consensus 203 VVLTK~D~l~p 213 (704)
+|+||.|....
T Consensus 244 ~IlTKlD~~ar 254 (429)
T TIGR01425 244 VIITKLDGHAK 254 (429)
T ss_pred EEEECccCCCC
Confidence 89999998743
No 266
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.41 E-value=1.7e-06 Score=87.51 Aligned_cols=109 Identities=9% Similarity=0.026 Sum_probs=63.3
Q ss_pred EeCCCCcHHHHHHHHhCCCCccccCCCCcc-ceEEEEEeeE--cCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhc
Q 005287 85 LGKTGVGKSATINSIFDQTKTETDAFQPAT-DCIREVKGSV--NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRR 161 (704)
Q Consensus 85 VGkTGvGKSTLINsLlG~~~a~vs~~~~tT-~~~~~~~~~~--~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~ 161 (704)
+|.+|||||||+++++...... ...++. .+.......+ ...++.|+||||-... ..+. ..+++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~--~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~--------~~l~---~~~~~- 66 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEK--KYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKF--------GGLR---DGYYI- 66 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCC--CCCCceeEEEEEEEEEECCEEEEEEEEECCCchhh--------hhhh---HHHhc-
Confidence 6999999999999998644211 122221 1222222233 3468899999998432 1111 12332
Q ss_pred CCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 162 SPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 162 ~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
.+|++++|.++.....-..-...+..+.+.. ...|+++|.||+|+.
T Consensus 67 -~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~---~~~piilvgNK~Dl~ 112 (200)
T smart00176 67 -QGQCAIIMFDVTARVTYKNVPNWHRDLVRVC---ENIPIVLCGNKVDVK 112 (200)
T ss_pred -CCCEEEEEEECCChHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccc
Confidence 6799999987764321001112333344332 247999999999974
No 267
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.39 E-value=2.3e-06 Score=102.21 Aligned_cols=115 Identities=13% Similarity=0.094 Sum_probs=71.3
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCC---------------CccceEEEEEeeE----cCeEEEEEECCCCCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQ---------------PATDCIREVKGSV----NGIKVTFIDTPGFLP 139 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~---------------~tT~~~~~~~~~~----~G~~v~LIDTPGl~d 139 (704)
--+|+|+|..++|||||+++|+.....+..... +.|.........+ .+..+.||||||..+
T Consensus 20 iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~d 99 (731)
T PRK07560 20 IRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVD 99 (731)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccC
Confidence 357999999999999999999864433221111 1222222222222 467899999999976
Q ss_pred cccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 140 SCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 140 ~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
.. ..+.+.++ .+|++++|++.... .......+++.+.+. ..|.|+++||+|...
T Consensus 100 f~-----------~~~~~~l~--~~D~avlVvda~~g-~~~~t~~~~~~~~~~-----~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 100 FG-----------GDVTRAMR--AVDGAIVVVDAVEG-VMPQTETVLRQALRE-----RVKPVLFINKVDRLI 153 (731)
T ss_pred hH-----------HHHHHHHH--hcCEEEEEEECCCC-CCccHHHHHHHHHHc-----CCCeEEEEECchhhc
Confidence 31 22334443 56999999775432 122455555554332 257799999999763
No 268
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.36 E-value=1.7e-06 Score=95.45 Aligned_cols=127 Identities=15% Similarity=0.126 Sum_probs=65.4
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCc-----cc-----cCCCCcc------------ceEEEEE---------eeEc
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKT-----ET-----DAFQPAT------------DCIREVK---------GSVN 125 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a-----~v-----s~~~~tT------------~~~~~~~---------~~~~ 125 (704)
...-.|+++|+||||||||+..|.+.-.. .+ +.+...- ....... ..+.
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~ 214 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR 214 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc
Confidence 34568999999999999999999753211 11 1111000 0000010 1234
Q ss_pred CeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccc---cccEE
Q 005287 126 GIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAI---WFNTI 202 (704)
Q Consensus 126 G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~---~k~vI 202 (704)
+..++||||||+.... ....+.+........+.-+++|++...... .-..+++......+... ....-
T Consensus 215 ~~DlVLIDTaG~~~~d-------~~l~e~La~L~~~~~~~~~lLVLsAts~~~--~l~evi~~f~~~~~~p~~~~~~~~~ 285 (374)
T PRK14722 215 NKHMVLIDTIGMSQRD-------RTVSDQIAMLHGADTPVQRLLLLNATSHGD--TLNEVVQAYRSAAGQPKAALPDLAG 285 (374)
T ss_pred CCCEEEEcCCCCCccc-------HHHHHHHHHHhccCCCCeEEEEecCccChH--HHHHHHHHHHHhhcccccccCCCCE
Confidence 6689999999996432 233334433222234555677755443221 11123333333322110 11346
Q ss_pred EEEEccCCCC
Q 005287 203 LVMTHSSSTL 212 (704)
Q Consensus 203 VVLTK~D~l~ 212 (704)
+|+||.|...
T Consensus 286 ~I~TKlDEt~ 295 (374)
T PRK14722 286 CILTKLDEAS 295 (374)
T ss_pred EEEeccccCC
Confidence 8899999774
No 269
>PRK12740 elongation factor G; Reviewed
Probab=98.36 E-value=2.3e-06 Score=101.11 Aligned_cols=108 Identities=16% Similarity=0.122 Sum_probs=69.2
Q ss_pred EeCCCCcHHHHHHHHhCCCCcccc--CC---------------CCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhh
Q 005287 85 LGKTGVGKSATINSIFDQTKTETD--AF---------------QPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKR 147 (704)
Q Consensus 85 VGkTGvGKSTLINsLlG~~~a~vs--~~---------------~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~ 147 (704)
+|++|+|||||+|.|+.....+.. .. .+.|.........+.+..+.+|||||..+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~------- 73 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDF------- 73 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHH-------
Confidence 699999999999999655433211 11 233444555567788999999999998542
Q ss_pred hHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 148 NRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 148 n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
......++. .+|++++|++..... ......++..+... ..|+++|+||+|..
T Consensus 74 ----~~~~~~~l~--~aD~vllvvd~~~~~-~~~~~~~~~~~~~~-----~~p~iiv~NK~D~~ 125 (668)
T PRK12740 74 ----TGEVERALR--VLDGAVVVVCAVGGV-EPQTETVWRQAEKY-----GVPRIIFVNKMDRA 125 (668)
T ss_pred ----HHHHHHHHH--HhCeEEEEEeCCCCc-CHHHHHHHHHHHHc-----CCCEEEEEECCCCC
Confidence 112223333 569999998765422 12233344443332 47899999999976
No 270
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.34 E-value=1e-06 Score=88.09 Aligned_cols=116 Identities=13% Similarity=0.212 Sum_probs=65.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEee---EcCeEEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGS---VNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~---~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
-.|+++|++|+|||+|+..|.......+ ..+. ....... ..+..+.|||+||...-. ......+.
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T--~tS~---e~n~~~~~~~~~~~~~~lvD~PGH~rlr-------~~~~~~~~ 71 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPT--VTSM---ENNIAYNVNNSKGKKLRLVDIPGHPRLR-------SKLLDELK 71 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B-----S---SEEEECCGSSTCGTCECEEEETT-HCCC-------HHHHHHHH
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCe--eccc---cCCceEEeecCCCCEEEEEECCCcHHHH-------HHHHHhhh
Confidence 4799999999999999999987643222 1111 1111111 256789999999996532 22333321
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc----cccccEEEEEEccCCCC
Q 005287 157 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT----AIWFNTILVMTHSSSTL 212 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~----~~~k~vIVVLTK~D~l~ 212 (704)
++ ..+-+|+||++...... .-..+.+.|...+-. ....|+.|+.||.|+..
T Consensus 72 -~~--~~~k~IIfvvDSs~~~~--~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 72 -YL--SNAKGIIFVVDSSTDQK--ELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp -HH--GGEEEEEEEEETTTHHH--HHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred -ch--hhCCEEEEEEeCccchh--hHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 23 24678999977543221 223455555554421 23579999999999874
No 271
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.34 E-value=5.2e-06 Score=86.17 Aligned_cols=123 Identities=13% Similarity=0.100 Sum_probs=68.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEee-EcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHH
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGS-VNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 159 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~-~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~i 159 (704)
||+++|+.|+||||..+.|++.-...-...-+.|.++...... .....+.+||.||-....... .. .... ..+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~--~~-~~~~---~if 74 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENY--FN-SQRE---EIF 74 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTT--HT-CCHH---HHH
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCcccccccc--cc-ccHH---HHH
Confidence 6999999999999999999987654433333456666655544 356699999999997652210 00 0011 122
Q ss_pred hcCCCCEEEEEEeccCccCCCCcHH-HHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 160 RRSPPDIVLYFERLDLISMGFSDFP-LLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 160 k~~~~dvVL~Vi~ld~~t~~~~D~~-lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
...++++||+++..... ..+.. +...+......+...++-+.+.|+|++.
T Consensus 75 --~~v~~LIyV~D~qs~~~-~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~ 125 (232)
T PF04670_consen 75 --SNVGVLIYVFDAQSDDY-DEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLS 125 (232)
T ss_dssp --CTESEEEEEEETT-STC-HHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-
T ss_pred --hccCEEEEEEEcccccH-HHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCC
Confidence 26689999977652221 12222 2222233322344567889999999884
No 272
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.33 E-value=5.4e-07 Score=100.85 Aligned_cols=62 Identities=24% Similarity=0.337 Sum_probs=55.5
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccc
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVR 143 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~ 143 (704)
.++|.+||.||||||||||+|.|.++..|++.++-|++.+.+..+ ..+.|.|+||+.-+++.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls---~~v~LCDCPGLVfPSf~ 375 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS---PSVCLCDCPGLVFPSFS 375 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC---CCceecCCCCccccCCC
Confidence 589999999999999999999999999999999999999988864 34799999999876553
No 273
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.33 E-value=2.7e-06 Score=97.07 Aligned_cols=84 Identities=20% Similarity=0.324 Sum_probs=49.1
Q ss_pred cccchhhHHHHHHhhcCCCCchHHHHHHHHHhhhcccccccchhhhhhcccchhHHHHhhccccCCCCCCCCCeEEEEEe
Q 005287 7 KIEDLQVKFLRLLQRFGQSQDNILAVKVLYRLHLATLIRAGESDMKMVNLRSDRTRAIAREQEATGIPDLDFSIRILVLG 86 (704)
Q Consensus 7 ki~~~rvk~lrl~~R~G~s~ed~~VaqvL~rl~lae~~~~~~~~~~~~~lg~d~a~~ia~~~~~~~~~~~~~~lrIlVVG 86 (704)
.-..++..++..+.+.|+++. ++.+++.++.........+ .. ....++........+.....-.|+|+|
T Consensus 289 ~~~P~~~~l~~~L~~~Gvs~~--la~~L~~~l~~~~~~~~~~------~~---l~~~L~~~l~v~~~~~l~~G~vIaLVG 357 (559)
T PRK12727 289 RGSPVRAQALELMDDYGFDAG--LTRDVAMQIPADTELHRGR------GL---MLGLLSKRLPVAPVDPLERGGVIALVG 357 (559)
T ss_pred ccChHHHHHHHHHHHCCCCHH--HHHHHHHhhhcccchhhHH------HH---HHHHHHHhcCcCccccccCCCEEEEEC
Confidence 345678888888999998763 4555555543211111100 00 111122222222333444567899999
Q ss_pred CCCCcHHHHHHHHhC
Q 005287 87 KTGVGKSATINSIFD 101 (704)
Q Consensus 87 kTGvGKSTLINsLlG 101 (704)
++|+|||||+..|..
T Consensus 358 PtGvGKTTtaakLAa 372 (559)
T PRK12727 358 PTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999999999875
No 274
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=2.1e-06 Score=93.68 Aligned_cols=91 Identities=20% Similarity=0.201 Sum_probs=67.3
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeE------------c------CeEEEEEECCCCCCc
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSV------------N------GIKVTFIDTPGFLPS 140 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~------------~------G~~v~LIDTPGl~d~ 140 (704)
.+++.|||.||||||||+|+|+... +....+|-||-++......+ . -.++.|||.+|+-..
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCC-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 4789999999999999999999988 66677888887765544321 1 136889999999988
Q ss_pred ccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCc
Q 005287 141 CVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLI 176 (704)
Q Consensus 141 ~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~ 176 (704)
...+.....+.+..|+ .+|+++.|++....
T Consensus 81 As~GeGLGNkFL~~IR------evdaI~hVVr~f~d 110 (372)
T COG0012 81 ASKGEGLGNKFLDNIR------EVDAIIHVVRCFGD 110 (372)
T ss_pred cccCCCcchHHHHhhh------hcCeEEEEEEecCC
Confidence 7665444455554443 56999999876543
No 275
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.28 E-value=5.5e-06 Score=83.31 Aligned_cols=114 Identities=19% Similarity=0.180 Sum_probs=65.0
Q ss_pred CeEEEEEeCCCCcHHHHHHH-HhCCCCcc---ccCCCCccc--e-EEEE-------EeeEcC--eEEEEEECCCCCCccc
Q 005287 79 SIRILVLGKTGVGKSATINS-IFDQTKTE---TDAFQPATD--C-IREV-------KGSVNG--IKVTFIDTPGFLPSCV 142 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINs-LlG~~~a~---vs~~~~tT~--~-~~~~-------~~~~~G--~~v~LIDTPGl~d~~~ 142 (704)
.++|+++|.+|||||||++. +.+..... .....|+.- + .... ...++| ..+.|+||||.... .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-~ 80 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-D 80 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh-h
Confidence 47999999999999999974 44332110 112233331 1 1111 012333 57889999998531 0
Q ss_pred chhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcH--HHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 143 RNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDF--PLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 143 ~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~--~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
.. .++ ..+|++++|.+++.... .... ..+..+.... ...|+|+|.||+|+.
T Consensus 81 ----------~~--~~~--~~ad~iilv~d~t~~~S-f~~~~~~w~~~i~~~~---~~~piilvgNK~DL~ 133 (195)
T cd01873 81 ----------RR--FAY--GRSDVVLLCFSIASPNS-LRNVKTMWYPEIRHFC---PRVPVILVGCKLDLR 133 (195)
T ss_pred ----------hc--ccC--CCCCEEEEEEECCChhH-HHHHHHHHHHHHHHhC---CCCCEEEEEEchhcc
Confidence 00 122 37899999988764321 1111 1333443332 246899999999975
No 276
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.26 E-value=1.1e-05 Score=78.95 Aligned_cols=114 Identities=13% Similarity=0.135 Sum_probs=80.9
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
..++|+++|..|+||||+++.+.|+....+ ..|...+.....+.+.++.++|.-|-..- ..+++ .
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~~~i----~pt~gf~Iktl~~~~~~L~iwDvGGq~~l--------r~~W~---n 79 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDTDTI----SPTLGFQIKTLEYKGYTLNIWDVGGQKTL--------RSYWK---N 79 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCcccc----CCccceeeEEEEecceEEEEEEcCCcchh--------HHHHH---H
Confidence 479999999999999999999999884433 34666677777889999999999887322 33443 3
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccc--ccccEEEEEEccCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA--IWFNTILVMTHSSST 211 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~--~~k~vIVVLTK~D~l 211 (704)
|.. ..|.++||++...... -......|++.+..+ +..+++++.||.|..
T Consensus 80 Yfe--stdglIwvvDssD~~r---~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~ 130 (185)
T KOG0073|consen 80 YFE--STDGLIWVVDSSDRMR---MQECKQELTELLVEERLAGAPLLVLANKQDLP 130 (185)
T ss_pred hhh--ccCeEEEEEECchHHH---HHHHHHHHHHHHhhhhhcCCceEEEEecCcCc
Confidence 443 5699999976643221 123445555554432 357999999999976
No 277
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.25 E-value=5.6e-07 Score=90.95 Aligned_cols=118 Identities=24% Similarity=0.303 Sum_probs=68.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCC------CCccc--cCCCCccc----------eEEEEEe-----------------eE
Q 005287 80 IRILVLGKTGVGKSATINSIFDQ------TKTET--DAFQPATD----------CIREVKG-----------------SV 124 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~------~~a~v--s~~~~tT~----------~~~~~~~-----------------~~ 124 (704)
-.|++||+|||||||++-.|... .+..+ +.+..... .+..+.. ..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~ 81 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK 81 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence 46899999999999999988532 22211 12221110 1111111 01
Q ss_pred cCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEE
Q 005287 125 NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILV 204 (704)
Q Consensus 125 ~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVV 204 (704)
.+..++||||||..... ...+.++++++....++-+++|++..... .+...+....+.++ ..-++
T Consensus 82 ~~~D~vlIDT~Gr~~~d-------~~~~~el~~~~~~~~~~~~~LVlsa~~~~---~~~~~~~~~~~~~~-----~~~lI 146 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRD-------EELLEELKKLLEALNPDEVHLVLSATMGQ---EDLEQALAFYEAFG-----IDGLI 146 (196)
T ss_dssp TTSSEEEEEE-SSSSTH-------HHHHHHHHHHHHHHSSSEEEEEEEGGGGG---HHHHHHHHHHHHSS-----TCEEE
T ss_pred cCCCEEEEecCCcchhh-------HHHHHHHHHHhhhcCCccceEEEecccCh---HHHHHHHHHhhccc-----CceEE
Confidence 34579999999997542 33445555555444778888897665433 34444444445443 34677
Q ss_pred EEccCCCC
Q 005287 205 MTHSSSTL 212 (704)
Q Consensus 205 LTK~D~l~ 212 (704)
+||.|...
T Consensus 147 lTKlDet~ 154 (196)
T PF00448_consen 147 LTKLDETA 154 (196)
T ss_dssp EESTTSSS
T ss_pred EEeecCCC
Confidence 99999873
No 278
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.22 E-value=8.5e-06 Score=90.27 Aligned_cols=120 Identities=18% Similarity=0.118 Sum_probs=70.3
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCC------CCccc--cCCCCc------c----ceEEEEEe--------------eEc
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQ------TKTET--DAFQPA------T----DCIREVKG--------------SVN 125 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~------~~a~v--s~~~~t------T----~~~~~~~~--------------~~~ 125 (704)
.+-.|+|+|++||||||++..|++. .+..+ +.+... + ..+..+.. ...
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 3568999999999999999999642 11111 111100 0 00000100 011
Q ss_pred CeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEE
Q 005287 126 GIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVM 205 (704)
Q Consensus 126 G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVL 205 (704)
+..++||||||..... ...+.++.+.+....+|.+++|+++.... .-+..+.+.|.. ....-+||
T Consensus 320 ~~DvVLIDTaGRs~kd-------~~lm~EL~~~lk~~~PdevlLVLsATtk~------~d~~~i~~~F~~--~~idglI~ 384 (436)
T PRK11889 320 RVDYILIDTAGKNYRA-------SETVEEMIETMGQVEPDYICLTLSASMKS------KDMIEIITNFKD--IHIDGIVF 384 (436)
T ss_pred CCCEEEEeCccccCcC-------HHHHHHHHHHHhhcCCCeEEEEECCccCh------HHHHHHHHHhcC--CCCCEEEE
Confidence 4589999999996532 44456667777666788888885443221 123344444443 23456789
Q ss_pred EccCCCC
Q 005287 206 THSSSTL 212 (704)
Q Consensus 206 TK~D~l~ 212 (704)
||.|...
T Consensus 385 TKLDET~ 391 (436)
T PRK11889 385 TKFDETA 391 (436)
T ss_pred EcccCCC
Confidence 9999774
No 279
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.21 E-value=9.3e-06 Score=89.70 Aligned_cols=119 Identities=19% Similarity=0.165 Sum_probs=74.9
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCC--ccccCCCCccceEEEEE-----------------------------eeEcCe
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTK--TETDAFQPATDCIREVK-----------------------------GSVNGI 127 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~--a~vs~~~~tT~~~~~~~-----------------------------~~~~G~ 127 (704)
.-.|++||+|||||||++-.|..+-. .....+.-.|+++.++- ......
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 56899999999999999999976543 11112223344443332 012345
Q ss_pred EEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEc
Q 005287 128 KVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTH 207 (704)
Q Consensus 128 ~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK 207 (704)
.++||||.|.... +...+.+++.++..+...-+.+|++++... ..++.+.+.|+.- ..--++|||
T Consensus 283 d~ILVDTaGrs~~-------D~~~i~el~~~~~~~~~i~~~Lvlsat~K~------~dlkei~~~f~~~--~i~~~I~TK 347 (407)
T COG1419 283 DVILVDTAGRSQY-------DKEKIEELKELIDVSHSIEVYLVLSATTKY------EDLKEIIKQFSLF--PIDGLIFTK 347 (407)
T ss_pred CEEEEeCCCCCcc-------CHHHHHHHHHHHhccccceEEEEEecCcch------HHHHHHHHHhccC--CcceeEEEc
Confidence 7999999999643 355567777777665444555665544332 3466666666533 334567899
Q ss_pred cCCCC
Q 005287 208 SSSTL 212 (704)
Q Consensus 208 ~D~l~ 212 (704)
.|...
T Consensus 348 lDET~ 352 (407)
T COG1419 348 LDETT 352 (407)
T ss_pred ccccC
Confidence 99773
No 280
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.20 E-value=5.5e-06 Score=91.12 Aligned_cols=89 Identities=15% Similarity=0.123 Sum_probs=64.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC-----------------eEEEEEECCCCCCccc
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG-----------------IKVTFIDTPGFLPSCV 142 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G-----------------~~v~LIDTPGl~d~~~ 142 (704)
+++.|||.||+|||||+|+|++.....+..++.+|.++......+.+ ..+.++|.||+.....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 78999999999999999999998864667777888776665544433 3689999999987654
Q ss_pred chhhhhHHHHHHHHHHHhcCCCCEEEEEEecc
Q 005287 143 RNVKRNRKIMLSVKKFIRRSPPDIVLYFERLD 174 (704)
Q Consensus 143 ~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld 174 (704)
.+...+...+..++ ..|++++|++..
T Consensus 83 ~g~Glgn~fL~~ir------~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIR------EVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHH------hCCEEEEEEeCC
Confidence 33223334444433 459999997753
No 281
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.18 E-value=2.7e-05 Score=88.09 Aligned_cols=119 Identities=19% Similarity=0.100 Sum_probs=72.3
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCc------------------------cc-c-----CCCCccceEEEEEeeEcC
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKT------------------------ET-D-----AFQPATDCIREVKGSVNG 126 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a------------------------~v-s-----~~~~tT~~~~~~~~~~~G 126 (704)
...++|+++|..++|||||+-.|+-.... .+ + ...+.|-+.....++..+
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 45689999999999999999888621100 00 0 012345566666677788
Q ss_pred eEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCC---CCcHHHHHHH--HHHhcccccccE
Q 005287 127 IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMG---FSDFPLLKLM--TEVFGTAIWFNT 201 (704)
Q Consensus 127 ~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~---~~D~~lLk~L--~~~fG~~~~k~v 201 (704)
+.++||||||..+ +...+...+ ..+|++++|++...-... ....++.+.+ ...+| -.++
T Consensus 85 ~~i~liDtPGh~d-----------f~~~~~~g~--~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~g---i~~i 148 (447)
T PLN00043 85 YYCTVIDAPGHRD-----------FIKNMITGT--SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLG---VKQM 148 (447)
T ss_pred EEEEEEECCCHHH-----------HHHHHHhhh--hhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcC---CCcE
Confidence 9999999999743 233333333 367999999877542110 0011222222 22222 2367
Q ss_pred EEEEEccCCC
Q 005287 202 ILVMTHSSST 211 (704)
Q Consensus 202 IVVLTK~D~l 211 (704)
|+++||+|..
T Consensus 149 IV~vNKmD~~ 158 (447)
T PLN00043 149 ICCCNKMDAT 158 (447)
T ss_pred EEEEEcccCC
Confidence 8899999965
No 282
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=1.5e-05 Score=80.05 Aligned_cols=118 Identities=19% Similarity=0.210 Sum_probs=73.6
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCcc--ceEEEEEeeEcCe--EEEEEECCCCCCcccchhhhhHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPAT--DCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIM 152 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT--~~~~~~~~~~~G~--~v~LIDTPGl~d~~~~~~~~n~~il 152 (704)
+.-++|+|+|-+|||||-|+-.+.+..-.... ..| .+......+++|. ++.||||+|-... ..+
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~---~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERF--------rti- 74 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESY---ISTIGVDFKIRTVELDGKTIKLQIWDTAGQERF--------RTI- 74 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhh---cceeeeEEEEEEeeecceEEEEEeeeccccHHH--------hhh-
Confidence 44689999999999999999998876533221 112 2334444455554 6889999998321 122
Q ss_pred HHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 153 LSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 153 ~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
+..+-+ ++|.|++|.+++....-..-...+..+.+.-.. ..|.++|-||+|+..
T Consensus 75 --t~syYR--~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~--~v~~lLVGNK~Dl~~ 128 (205)
T KOG0084|consen 75 --TSSYYR--GAHGIIFVYDITKQESFNNVKRWIQEIDRYASE--NVPKLLVGNKCDLTE 128 (205)
T ss_pred --hHhhcc--CCCeEEEEEEcccHHHhhhHHHHHHHhhhhccC--CCCeEEEeeccccHh
Confidence 222322 789999998886543211222344444443222 368999999999873
No 283
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.15 E-value=1.8e-05 Score=88.68 Aligned_cols=120 Identities=14% Similarity=0.135 Sum_probs=67.6
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCc-----cc-----cCCCCccc----------eEEEE--E---------eeEcC
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKT-----ET-----DAFQPATD----------CIREV--K---------GSVNG 126 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a-----~v-----s~~~~tT~----------~~~~~--~---------~~~~G 126 (704)
..-.|++||++|+|||||++.|.+.... .+ +.+...-. .+... . ....+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 4568999999999999999998764211 10 11100000 00000 0 12345
Q ss_pred eEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEE
Q 005287 127 IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMT 206 (704)
Q Consensus 127 ~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLT 206 (704)
..+++|||+|+.... ....+++..+.....++-+++|++..... ..+..+...|.. ....-+|+|
T Consensus 270 ~d~VLIDTaGrsqrd-------~~~~~~l~~l~~~~~~~~~~LVl~at~~~------~~~~~~~~~f~~--~~~~~~I~T 334 (420)
T PRK14721 270 KHMVLIDTVGMSQRD-------QMLAEQIAMLSQCGTQVKHLLLLNATSSG------DTLDEVISAYQG--HGIHGCIIT 334 (420)
T ss_pred CCEEEecCCCCCcch-------HHHHHHHHHHhccCCCceEEEEEcCCCCH------HHHHHHHHHhcC--CCCCEEEEE
Confidence 678999999996541 33445555433223456677775544222 345555555542 234567899
Q ss_pred ccCCCC
Q 005287 207 HSSSTL 212 (704)
Q Consensus 207 K~D~l~ 212 (704)
|.|...
T Consensus 335 KlDEt~ 340 (420)
T PRK14721 335 KVDEAA 340 (420)
T ss_pred eeeCCC
Confidence 999874
No 284
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.15 E-value=7.2e-07 Score=97.36 Aligned_cols=66 Identities=32% Similarity=0.537 Sum_probs=58.4
Q ss_pred CCCCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccc
Q 005287 75 DLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVR 143 (704)
Q Consensus 75 ~~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~ 143 (704)
.+..++++.|||-|||||||+||+|..+....++..++.|+..+++.+ +..+.|+|.||+.-...+
T Consensus 248 ~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~L---dk~i~llDsPgiv~~~~~ 313 (435)
T KOG2484|consen 248 ELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKL---DKKIRLLDSPGIVPPSID 313 (435)
T ss_pred ccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheec---cCCceeccCCceeecCCC
Confidence 456789999999999999999999999999999999999999988874 678999999999876543
No 285
>PRK13768 GTPase; Provisional
Probab=98.11 E-value=5.6e-06 Score=86.71 Aligned_cols=82 Identities=20% Similarity=0.193 Sum_probs=47.1
Q ss_pred eEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEE
Q 005287 127 IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMT 206 (704)
Q Consensus 127 ~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLT 206 (704)
..+++|||||..+... .......+.+.+.....+++++|++..... +..+......+....-....+|+|+|+|
T Consensus 97 ~~~~~~d~~g~~~~~~-----~~~~~~~~~~~l~~~~~~~ii~liD~~~~~-~~~d~~~~~~l~~~~~~~~~~~~i~v~n 170 (253)
T PRK13768 97 ADYVLVDTPGQMELFA-----FRESGRKLVERLSGSSKSVVVFLIDAVLAK-TPSDFVSLLLLALSVQLRLGLPQIPVLN 170 (253)
T ss_pred CCEEEEeCCcHHHHHh-----hhHHHHHHHHHHHhcCCeEEEEEechHHhC-CHHHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 3689999999865421 122233333444332378999997664322 1234444433321111123589999999
Q ss_pred ccCCCCCC
Q 005287 207 HSSSTLPE 214 (704)
Q Consensus 207 K~D~l~pd 214 (704)
|+|...+.
T Consensus 171 K~D~~~~~ 178 (253)
T PRK13768 171 KADLLSEE 178 (253)
T ss_pred hHhhcCch
Confidence 99998654
No 286
>PRK01889 GTPase RsgA; Reviewed
Probab=98.11 E-value=6.3e-07 Score=98.38 Aligned_cols=119 Identities=22% Similarity=0.258 Sum_probs=66.4
Q ss_pred HHHHHHhhcCCCCchHHHHHHHHHhhhcccccccchhhhhhcccchhHHHHhhccccCCCCC----CCCCeEEEEEeCCC
Q 005287 14 KFLRLLQRFGQSQDNILAVKVLYRLHLATLIRAGESDMKMVNLRSDRTRAIAREQEATGIPD----LDFSIRILVLGKTG 89 (704)
Q Consensus 14 k~lrl~~R~G~s~ed~~VaqvL~rl~lae~~~~~~~~~~~~~lg~d~a~~ia~~~~~~~~~~----~~~~lrIlVVGkTG 89 (704)
+||.++...|+.| .-+|+|.++++..............++.. ..++... ..+.+. ....-+++++|.+|
T Consensus 133 r~L~~a~~~~i~p-----iIVLNK~DL~~~~~~~~~~~~~~~~g~~V-i~vSa~~-g~gl~~L~~~L~~g~~~~lvG~sg 205 (356)
T PRK01889 133 RYLALAWESGAEP-----VIVLTKADLCEDAEEKIAEVEALAPGVPV-LAVSALD-GEGLDVLAAWLSGGKTVALLGSSG 205 (356)
T ss_pred HHHHHHHHcCCCE-----EEEEEChhcCCCHHHHHHHHHHhCCCCcE-EEEECCC-CccHHHHHHHhhcCCEEEEECCCC
Confidence 7888888899877 44889988875421111111111112211 1122221 122211 12234899999999
Q ss_pred CcHHHHHHHHhCCCCccccCC-------CCccceEEEEEeeEcCeEEEEEECCCCCCccc
Q 005287 90 VGKSATINSIFDQTKTETDAF-------QPATDCIREVKGSVNGIKVTFIDTPGFLPSCV 142 (704)
Q Consensus 90 vGKSTLINsLlG~~~a~vs~~-------~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~ 142 (704)
+|||||+|.|+|.....++.+ ..+|+....+....+ ..++||||+.....
T Consensus 206 vGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~---~~l~DtpG~~~~~l 262 (356)
T PRK01889 206 VGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSG---GLLIDTPGMRELQL 262 (356)
T ss_pred ccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCC---CeecCCCchhhhcc
Confidence 999999999999766544322 123433333332212 26889999976544
No 287
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.10 E-value=1.4e-05 Score=88.19 Aligned_cols=121 Identities=19% Similarity=0.180 Sum_probs=69.4
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCC------CCccc--cCCCCccc----------eEEEEEe-e-------------E
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQ------TKTET--DAFQPATD----------CIREVKG-S-------------V 124 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~------~~a~v--s~~~~tT~----------~~~~~~~-~-------------~ 124 (704)
...-.|+++|++||||||++..|... .+..+ +.+.+... .+..+.. . .
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~ 283 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYV 283 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhc
Confidence 34567899999999999999998632 22222 22222110 1100000 0 1
Q ss_pred cCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEE
Q 005287 125 NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILV 204 (704)
Q Consensus 125 ~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVV 204 (704)
.+..++||||||.... +...+.++..+.....+|.+++|.... . ....+.. +...|.. ....-+|
T Consensus 284 ~~~D~VLIDTAGr~~~-------d~~~l~EL~~l~~~~~p~~~~LVLsag--~---~~~d~~~-i~~~f~~--l~i~glI 348 (407)
T PRK12726 284 NCVDHILIDTVGRNYL-------AEESVSEISAYTDVVHPDLTCFTFSSG--M---KSADVMT-ILPKLAE--IPIDGFI 348 (407)
T ss_pred CCCCEEEEECCCCCcc-------CHHHHHHHHHHhhccCCceEEEECCCc--c---cHHHHHH-HHHhcCc--CCCCEEE
Confidence 2468999999999653 244556666666555778877885332 1 1223333 3333331 2355788
Q ss_pred EEccCCCC
Q 005287 205 MTHSSSTL 212 (704)
Q Consensus 205 LTK~D~l~ 212 (704)
+||.|...
T Consensus 349 ~TKLDET~ 356 (407)
T PRK12726 349 ITKMDETT 356 (407)
T ss_pred EEcccCCC
Confidence 99999774
No 288
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=98.09 E-value=5.4e-06 Score=88.38 Aligned_cols=69 Identities=28% Similarity=0.355 Sum_probs=55.7
Q ss_pred CCCCeEEEEEeCCCCcHHHHHHHHhCC-----CCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccch
Q 005287 76 LDFSIRILVLGKTGVGKSATINSIFDQ-----TKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRN 144 (704)
Q Consensus 76 ~~~~lrIlVVGkTGvGKSTLINsLlG~-----~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~ 144 (704)
.....+++|+|-||||||||||++... ..+.++..++.|+.+...........+.++||||+..++..+
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I~~ 213 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPSIVD 213 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCCCCCC
Confidence 456789999999999999999999432 445567888999998886655567789999999999886543
No 289
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.08 E-value=1.7e-05 Score=99.24 Aligned_cols=124 Identities=19% Similarity=0.176 Sum_probs=75.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCcccc-------CCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHH
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTETD-------AFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIML 153 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~vs-------~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~ 153 (704)
=.+|||++|+||||+|+.- |.+..... ...+.|+.|..... .+-++|||+|..-...+........+.
T Consensus 113 WYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~----~~avliDtaG~y~~~~~~~~~~~~~W~ 187 (1169)
T TIGR03348 113 WYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFT----DEAVLIDTAGRYTTQDSDPEEDAAAWL 187 (1169)
T ss_pred CEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEec----CCEEEEcCCCccccCCCcccccHHHHH
Confidence 4689999999999999776 44321110 11245666666543 345899999987543221112233344
Q ss_pred HHHHHHh----cCCCCEEEEEEeccCccC-CCCc--------HHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 154 SVKKFIR----RSPPDIVLYFERLDLISM-GFSD--------FPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 154 ~Ik~~ik----~~~~dvVL~Vi~ld~~t~-~~~D--------~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
.+-+.++ ..+++.||++++++..-. +..+ ..-+..+.+.+|. ..|+.||+||+|++
T Consensus 188 ~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~--~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 188 GFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGA--RFPVYLVLTKADLL 256 (1169)
T ss_pred HHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCC--CCCEEEEEecchhh
Confidence 4433333 347899999988764421 1111 1234445555554 48999999999987
No 290
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=98.08 E-value=1.1e-05 Score=81.69 Aligned_cols=119 Identities=23% Similarity=0.191 Sum_probs=76.4
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCe--EEEEEECCCCCCcccchhhhhHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIMLSV 155 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~--~v~LIDTPGl~d~~~~~~~~n~~il~~I 155 (704)
...+|+++|.+|||||+|...+++...... +.|+..+.......++|. .+.|+||+|..+.. .+ -
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~--y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~--------~~---~ 68 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVED--YDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFS--------AM---R 68 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccc--cCCCccccceEEEEECCEEEEEEEEcCCCcccCh--------HH---H
Confidence 357999999999999999988887654333 445555544444455544 56799999943221 11 1
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 156 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 156 k~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
..++. ..|.+++|..++....-.....+...|.+..+.. +.|+|+|-||+|+..
T Consensus 69 ~~~~~--~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~-~~PivlVGNK~Dl~~ 122 (196)
T KOG0395|consen 69 DLYIR--NGDGFLLVYSITDRSSFEEAKQLREQILRVKGRD-DVPIILVGNKCDLER 122 (196)
T ss_pred HHhhc--cCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcC-CCCEEEEEEcccchh
Confidence 12343 5689999987765442112334555554443333 479999999999874
No 291
>PRK14974 cell division protein FtsY; Provisional
Probab=98.06 E-value=1e-05 Score=88.23 Aligned_cols=121 Identities=21% Similarity=0.320 Sum_probs=70.9
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCC------CCcccc--CCCCcc-c---------eEEEEE-----------------
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQ------TKTETD--AFQPAT-D---------CIREVK----------------- 121 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~------~~a~vs--~~~~tT-~---------~~~~~~----------------- 121 (704)
..+..|+++|++|+||||++..|... .+..+. .+.... . .+..+.
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~ 217 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEH 217 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHH
Confidence 34678999999999999999888631 221111 111100 0 000000
Q ss_pred eeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccE
Q 005287 122 GSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNT 201 (704)
Q Consensus 122 ~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~v 201 (704)
....+..++||||||..... ...+.++++..+...+|.+++|++... . ......++.+.+.. ...
T Consensus 218 ~~~~~~DvVLIDTaGr~~~~-------~~lm~eL~~i~~~~~pd~~iLVl~a~~--g-~d~~~~a~~f~~~~-----~~~ 282 (336)
T PRK14974 218 AKARGIDVVLIDTAGRMHTD-------ANLMDELKKIVRVTKPDLVIFVGDALA--G-NDAVEQAREFNEAV-----GID 282 (336)
T ss_pred HHhCCCCEEEEECCCccCCc-------HHHHHHHHHHHHhhCCceEEEeecccc--c-hhHHHHHHHHHhcC-----CCC
Confidence 01235679999999997542 445566666655557899999965532 1 12333344443332 345
Q ss_pred EEEEEccCCCC
Q 005287 202 ILVMTHSSSTL 212 (704)
Q Consensus 202 IVVLTK~D~l~ 212 (704)
-+|+||.|...
T Consensus 283 giIlTKlD~~~ 293 (336)
T PRK14974 283 GVILTKVDADA 293 (336)
T ss_pred EEEEeeecCCC
Confidence 78999999874
No 292
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.05 E-value=4.2e-05 Score=81.15 Aligned_cols=120 Identities=27% Similarity=0.286 Sum_probs=67.5
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhC------CCCcccc--CCCCc---------c-ceEEEEEe-----------------
Q 005287 78 FSIRILVLGKTGVGKSATINSIFD------QTKTETD--AFQPA---------T-DCIREVKG----------------- 122 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG------~~~a~vs--~~~~t---------T-~~~~~~~~----------------- 122 (704)
..-.|+++|++|+||||++..|.. ..+..++ .+... . .....+..
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~ 150 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKA 150 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence 356788999999999999988853 2222221 11110 0 00111100
Q ss_pred eEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcC------CCCEEEEEEeccCccCCCCcHHHHHHHHHHhccc
Q 005287 123 SVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRS------PPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA 196 (704)
Q Consensus 123 ~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~------~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~ 196 (704)
...+..++||||||..... ...+.+++++.+.. .+|.+++|++.... ..+......+.+.+
T Consensus 151 ~~~~~D~ViIDT~G~~~~d-------~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~---~~~~~~~~~f~~~~--- 217 (272)
T TIGR00064 151 KARNIDVVLIDTAGRLQNK-------VNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG---QNALEQAKVFNEAV--- 217 (272)
T ss_pred HHCCCCEEEEeCCCCCcch-------HHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC---HHHHHHHHHHHhhC---
Confidence 1245789999999997542 33344444433222 38889999776421 12333333333332
Q ss_pred ccccEEEEEEccCCCC
Q 005287 197 IWFNTILVMTHSSSTL 212 (704)
Q Consensus 197 ~~k~vIVVLTK~D~l~ 212 (704)
...-+|+||.|...
T Consensus 218 --~~~g~IlTKlDe~~ 231 (272)
T TIGR00064 218 --GLTGIILTKLDGTA 231 (272)
T ss_pred --CCCEEEEEccCCCC
Confidence 35678999999874
No 293
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.04 E-value=3.2e-05 Score=91.91 Aligned_cols=121 Identities=15% Similarity=0.125 Sum_probs=69.5
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCcc-----c-----cCCCCccc----------eEEEEE-----------eeEcCe
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTE-----T-----DAFQPATD----------CIREVK-----------GSVNGI 127 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~-----v-----s~~~~tT~----------~~~~~~-----------~~~~G~ 127 (704)
.-.|++||++||||||++..|.+.-... + +.+..... .+.... ....+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~ 264 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDK 264 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCC
Confidence 4578999999999999999998643111 1 11110000 000000 012355
Q ss_pred EEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccc-cccEEEEEE
Q 005287 128 KVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAI-WFNTILVMT 206 (704)
Q Consensus 128 ~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~-~k~vIVVLT 206 (704)
.++||||||..... ...++++........++-+++|++.... ...++.+.+.|.... ....-+|||
T Consensus 265 D~VLIDTAGRs~~d-------~~l~eel~~l~~~~~p~e~~LVLsAt~~------~~~l~~i~~~f~~~~~~~i~glIlT 331 (767)
T PRK14723 265 HLVLIDTVGMSQRD-------RNVSEQIAMLCGVGRPVRRLLLLNAASH------GDTLNEVVHAYRHGAGEDVDGCIIT 331 (767)
T ss_pred CEEEEeCCCCCccC-------HHHHHHHHHHhccCCCCeEEEEECCCCc------HHHHHHHHHHHhhcccCCCCEEEEe
Confidence 79999999986542 3345555544444467788888654422 234555555553221 124568899
Q ss_pred ccCCCC
Q 005287 207 HSSSTL 212 (704)
Q Consensus 207 K~D~l~ 212 (704)
|.|...
T Consensus 332 KLDEt~ 337 (767)
T PRK14723 332 KLDEAT 337 (767)
T ss_pred ccCCCC
Confidence 999874
No 294
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=5.3e-05 Score=76.85 Aligned_cols=119 Identities=20% Similarity=0.163 Sum_probs=75.9
Q ss_pred CCCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccc--eEEEEEeeEcCe--EEEEEECCCCCCcccchhhhhHHH
Q 005287 76 LDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATD--CIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKI 151 (704)
Q Consensus 76 ~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~--~~~~~~~~~~G~--~v~LIDTPGl~d~~~~~~~~n~~i 151 (704)
-+..++|+++|.+|||||.++-.+.... +..+- ..|- +......+.+|. .+.+|||+|-... ..+
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~-f~~~~--~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf--------~ti 77 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDS-FNTSF--ISTIGIDFKIKTIELDGKKIKLQIWDTAGQERF--------RTI 77 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhcc-CcCCc--cceEEEEEEEEEEEeCCeEEEEEEEEcccchhH--------HHH
Confidence 3456899999999999999998887644 22211 1121 233333445554 5689999998432 222
Q ss_pred HHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 152 MLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 152 l~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
+..+.+ +++.+++|.++.....-.+....++.+.+. .+...+.++|-||+|+..
T Consensus 78 ---~~sYyr--gA~gi~LvyDitne~Sfeni~~W~~~I~e~--a~~~v~~~LvGNK~D~~~ 131 (207)
T KOG0078|consen 78 ---TTAYYR--GAMGILLVYDITNEKSFENIRNWIKNIDEH--ASDDVVKILVGNKCDLEE 131 (207)
T ss_pred ---HHHHHh--hcCeeEEEEEccchHHHHHHHHHHHHHHhh--CCCCCcEEEeeccccccc
Confidence 333443 778898887775433222344566666665 333688999999999874
No 295
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.02 E-value=1.8e-05 Score=85.27 Aligned_cols=91 Identities=19% Similarity=0.207 Sum_probs=67.3
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEc--------------C---eEEEEEECCCCCC
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVN--------------G---IKVTFIDTPGFLP 139 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~--------------G---~~v~LIDTPGl~d 139 (704)
...++|.+||.|||||||++|+|+..... ...++-+|-++......+. + -.+.|+|++|+-.
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~-~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk 96 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAG-AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK 96 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCC-ccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence 46789999999999999999999988766 6678888887665543321 1 2689999999988
Q ss_pred cccchhhhhHHHHHHHHHHHhcCCCCEEEEEEecc
Q 005287 140 SCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLD 174 (704)
Q Consensus 140 ~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld 174 (704)
....++......+..++ .+|.++-|++.-
T Consensus 97 GAs~G~GLGN~FLs~iR------~vDaifhVVr~f 125 (391)
T KOG1491|consen 97 GASAGEGLGNKFLSHIR------HVDAIFHVVRAF 125 (391)
T ss_pred CcccCcCchHHHHHhhh------hccceeEEEEec
Confidence 87665444455555443 458888887653
No 296
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.00 E-value=6.8e-05 Score=74.73 Aligned_cols=118 Identities=14% Similarity=0.135 Sum_probs=75.1
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccc-----c-CCC---CccceEEEEEeeEcC-eEEEEEECCCCCCcccchhhh
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTET-----D-AFQ---PATDCIREVKGSVNG-IKVTFIDTPGFLPSCVRNVKR 147 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~v-----s-~~~---~tT~~~~~~~~~~~G-~~v~LIDTPGl~d~~~~~~~~ 147 (704)
...+|+|+|+-|+||+|++.++.......+ + ... ++|....-......+ ..+.++||||-...
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF------- 81 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERF------- 81 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHH-------
Confidence 457999999999999999999998775433 1 111 244444444555555 89999999998432
Q ss_pred hHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCCC
Q 005287 148 NRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 213 (704)
Q Consensus 148 n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~p 213 (704)
..+++.+. .++...+++++..+.. +..+..++..+.... ..|++|.+||-|+...
T Consensus 82 -~fm~~~l~-----~ga~gaivlVDss~~~-~~~a~~ii~f~~~~~----~ip~vVa~NK~DL~~a 136 (187)
T COG2229 82 -KFMWEILS-----RGAVGAIVLVDSSRPI-TFHAEEIIDFLTSRN----PIPVVVAINKQDLFDA 136 (187)
T ss_pred -HHHHHHHh-----CCcceEEEEEecCCCc-chHHHHHHHHHhhcc----CCCEEEEeeccccCCC
Confidence 33333322 2455544443333221 124456666666652 2799999999998743
No 297
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=1.9e-05 Score=85.68 Aligned_cols=131 Identities=21% Similarity=0.309 Sum_probs=77.1
Q ss_pred CCCCeEEEEEeCCCCcHHHHHHHHhCCCCcccc-CCCCccceEEEEEe-----eEcC-----------------------
Q 005287 76 LDFSIRILVLGKTGVGKSATINSIFDQTKTETD-AFQPATDCIREVKG-----SVNG----------------------- 126 (704)
Q Consensus 76 ~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs-~~~~tT~~~~~~~~-----~~~G----------------------- 126 (704)
....--|+++|+-..||||+||.|+..+..... ...|+|.....+.. .+.|
T Consensus 55 fd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afln 134 (532)
T KOG1954|consen 55 FDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLN 134 (532)
T ss_pred cccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHH
Confidence 334557999999999999999999988754321 22344443332210 0111
Q ss_pred ------------eEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhc
Q 005287 127 ------------IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFG 194 (704)
Q Consensus 127 ------------~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG 194 (704)
..++||||||+.+.......+.-.....+..++. ++|.|+++.+.-..... | ++-+.|...-|
T Consensus 135 Rf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFae--R~D~IiLlfD~hKLDIs--d-Ef~~vi~aLkG 209 (532)
T KOG1954|consen 135 RFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAE--RVDRIILLFDAHKLDIS--D-EFKRVIDALKG 209 (532)
T ss_pred HHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHH--hccEEEEEechhhcccc--H-HHHHHHHHhhC
Confidence 2589999999987643211122223334444443 67999888655433321 2 23334444444
Q ss_pred ccccccEEEEEEccCCCCC
Q 005287 195 TAIWFNTILVMTHSSSTLP 213 (704)
Q Consensus 195 ~~~~k~vIVVLTK~D~l~p 213 (704)
.+ ..+-||+||+|...+
T Consensus 210 ~E--dkiRVVLNKADqVdt 226 (532)
T KOG1954|consen 210 HE--DKIRVVLNKADQVDT 226 (532)
T ss_pred Cc--ceeEEEeccccccCH
Confidence 43 567789999998853
No 298
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=4.1e-05 Score=76.98 Aligned_cols=118 Identities=14% Similarity=0.135 Sum_probs=71.4
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCc-cceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHH
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPA-TDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 155 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~t-T~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~I 155 (704)
..+|+++|..+|||||||+...-...-.. +.+| --+.....+.+.| .++.+|||+|-. +...-+
T Consensus 22 ~~KlVflGdqsVGKTslItRf~yd~fd~~--YqATIGiDFlskt~~l~d~~vrLQlWDTAGQE-----------RFrsli 88 (221)
T KOG0094|consen 22 KYKLVFLGDQSVGKTSLITRFMYDKFDNT--YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE-----------RFRSLI 88 (221)
T ss_pred EEEEEEEccCccchHHHHHHHHHhhhccc--ccceeeeEEEEEEEEEcCcEEEEEEEecccHH-----------HHhhhh
Confidence 48999999999999999999975442222 1111 1122222333444 467899999973 222334
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccccc--ccEEEEEEccCCCCCC
Q 005287 156 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIW--FNTILVMTHSSSTLPE 214 (704)
Q Consensus 156 k~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~--k~vIVVLTK~D~l~pd 214 (704)
-.|++ .+.++++|.++..... -..+-++|.+....... ..+++|-||.|+..+.
T Consensus 89 psY~R--ds~vaviVyDit~~~S---fe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkr 144 (221)
T KOG0094|consen 89 PSYIR--DSSVAVIVYDITDRNS---FENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKR 144 (221)
T ss_pred hhhcc--CCeEEEEEEeccccch---HHHHHHHHHHHHhccCCCceEEEEEcccccccchh
Confidence 45665 4578888877654432 23455555555443322 4566777999998543
No 299
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=1.5e-05 Score=79.72 Aligned_cols=119 Identities=15% Similarity=0.114 Sum_probs=68.8
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccce-EEEEEeeEc--CeEEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDC-IREVKGSVN--GIKVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~-~~~~~~~~~--G~~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
..++|+|+|.+|||||||+=...-...-.. ..+|+-. .......+. ..++.|+||+|......
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~--~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~s------------ 69 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHEN--IEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHS------------ 69 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccc--cccccccEEEEEEEEeCCcEEEEEEEEcCCcccccc------------
Confidence 468999999999999999977754332211 1121111 111112223 46788999999954311
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCCC
Q 005287 155 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 213 (704)
Q Consensus 155 Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~p 213 (704)
+.. +-..+++++|+|.+++....-..-+..++.|++.-++ ...+.+|-||+|+..+
T Consensus 70 lap-MYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~--~~vialvGNK~DL~~~ 125 (200)
T KOG0092|consen 70 LAP-MYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASP--NIVIALVGNKADLLER 125 (200)
T ss_pred ccc-ceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCC--CeEEEEecchhhhhhc
Confidence 110 1113789999998776543211234455556555331 2344458899999863
No 300
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.95 E-value=6.4e-05 Score=83.01 Aligned_cols=119 Identities=13% Similarity=0.155 Sum_probs=75.7
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHh---C------------------CCCccc---------cCCCCccceEEEEEeeEcC
Q 005287 77 DFSIRILVLGKTGVGKSATINSIF---D------------------QTKTET---------DAFQPATDCIREVKGSVNG 126 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLl---G------------------~~~a~v---------s~~~~tT~~~~~~~~~~~G 126 (704)
...++++++|...+|||||+-.|+ | .+-+.- -...+.|-+.....++.+-
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 346899999999999999998884 2 110000 0112455566666677777
Q ss_pred eEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCcc------CCCCcHHHHHHHHHHhccccccc
Q 005287 127 IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLIS------MGFSDFPLLKLMTEVFGTAIWFN 200 (704)
Q Consensus 127 ~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t------~~~~D~~lLk~L~~~fG~~~~k~ 200 (704)
+.++|+|+||.++. +.+.+.. .+++|+.++|++..... ...+.. ---.|.+.+| -.+
T Consensus 85 ~~~tIiDaPGHrdF----------vknmItG---asqAD~aVLVV~a~~~efE~g~~~~gQtr-EH~~La~tlG---i~~ 147 (428)
T COG5256 85 YNFTIIDAPGHRDF----------VKNMITG---ASQADVAVLVVDARDGEFEAGFGVGGQTR-EHAFLARTLG---IKQ 147 (428)
T ss_pred ceEEEeeCCchHHH----------HHHhhcc---hhhccEEEEEEECCCCccccccccCCchh-HHHHHHHhcC---Cce
Confidence 88999999996543 1111211 13789999998765331 111222 2334555556 468
Q ss_pred EEEEEEccCCCC
Q 005287 201 TILVMTHSSSTL 212 (704)
Q Consensus 201 vIVVLTK~D~l~ 212 (704)
.||++||+|...
T Consensus 148 lIVavNKMD~v~ 159 (428)
T COG5256 148 LIVAVNKMDLVS 159 (428)
T ss_pred EEEEEEcccccc
Confidence 999999999884
No 301
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=97.95 E-value=2.6e-05 Score=83.57 Aligned_cols=128 Identities=20% Similarity=0.174 Sum_probs=79.6
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEe-eEcCeEEEEEECCCCCCcccchhhhhHHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKG-SVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSV 155 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~-~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~I 155 (704)
.....|+|||.||+|||||||+|++......... ..|-++..... -..|..+.+.||-||... ........+
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drL-FATLDpT~h~a~Lpsg~~vlltDTvGFisd------LP~~LvaAF 248 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRL-FATLDPTLHSAHLPSGNFVLLTDTVGFISD------LPIQLVAAF 248 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCccchh-heeccchhhhccCCCCcEEEEeechhhhhh------CcHHHHHHH
Confidence 3456899999999999999999996544433221 22333332222 236889999999999753 223333444
Q ss_pred HHHHhc-CCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc-c--ccccEEEEEEccCCCC
Q 005287 156 KKFIRR-SPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT-A--IWFNTILVMTHSSSTL 212 (704)
Q Consensus 156 k~~ik~-~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~-~--~~k~vIVVLTK~D~l~ 212 (704)
...+.. ..+|++|.|.+++......+...++..+..+ |- . ...++|=|=||.|.-+
T Consensus 249 ~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~i-gv~~~pkl~~mieVdnkiD~e~ 308 (410)
T KOG0410|consen 249 QATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQI-GVPSEPKLQNMIEVDNKIDYEE 308 (410)
T ss_pred HHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhc-CCCcHHHHhHHHhhcccccccc
Confidence 333322 2679999998887665433344456555553 22 1 1245677888988653
No 302
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.94 E-value=7.7e-05 Score=80.95 Aligned_cols=120 Identities=27% Similarity=0.315 Sum_probs=65.3
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCC------CCcccc--CCCCc---------c-ceEEEEEe-----------------
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQ------TKTETD--AFQPA---------T-DCIREVKG----------------- 122 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~------~~a~vs--~~~~t---------T-~~~~~~~~----------------- 122 (704)
.+-.|+++|++|+||||++..|.+. .+...+ .+... . ..+..+..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999998653 111111 11110 0 00111100
Q ss_pred eEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHH---Hh---cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccc
Q 005287 123 SVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF---IR---RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA 196 (704)
Q Consensus 123 ~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~---ik---~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~ 196 (704)
...+..++||||||...... ..+.+++++ +. ...++-+++|++..... .+..-.....+.+
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~-------~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~---~~~~~a~~f~~~~--- 259 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKT-------NLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ---NALSQAKAFHEAV--- 259 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCH-------HHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh---HHHHHHHHHHhhC---
Confidence 12456899999999976532 222233322 21 23578888887665321 2222222222221
Q ss_pred ccccEEEEEEccCCCC
Q 005287 197 IWFNTILVMTHSSSTL 212 (704)
Q Consensus 197 ~~k~vIVVLTK~D~l~ 212 (704)
...-+|+||.|...
T Consensus 260 --~~~giIlTKlD~t~ 273 (318)
T PRK10416 260 --GLTGIILTKLDGTA 273 (318)
T ss_pred --CCCEEEEECCCCCC
Confidence 35578999999663
No 303
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.93 E-value=1.3e-05 Score=83.13 Aligned_cols=107 Identities=20% Similarity=0.293 Sum_probs=74.4
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
..-||+++|-|.||||||+..|.... ....++..+|-.|.......+|-.+.+.|.||+.+....+..+...+....
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~-SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavA-- 137 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTH-SEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVA-- 137 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcch-hhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEe--
Confidence 35699999999999999999998765 333446678999999999999999999999999987654422233222111
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhc
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFG 194 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG 194 (704)
..+|+||+|+++.... ....+++.-.+..|
T Consensus 138 ----rtaDlilMvLDatk~e---~qr~~le~ELe~vG 167 (364)
T KOG1486|consen 138 ----RTADLILMVLDATKSE---DQREILEKELEAVG 167 (364)
T ss_pred ----ecccEEEEEecCCcch---hHHHHHHHHHHHhc
Confidence 2679999996554332 23334444444444
No 304
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.92 E-value=4.2e-05 Score=87.13 Aligned_cols=122 Identities=17% Similarity=0.213 Sum_probs=81.9
Q ss_pred CCCCCeEEEEEeCCCCcHHHHHHHHhCCCCccc--cCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHH
Q 005287 75 DLDFSIRILVLGKTGVGKSATINSIFDQTKTET--DAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIM 152 (704)
Q Consensus 75 ~~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~v--s~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il 152 (704)
.....+||+|+|-.|+||||||=+|+.++.... ...+..|-- ...+....+..++||.--.+. ...+.
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP---advtPe~vpt~ivD~ss~~~~-------~~~l~ 74 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP---ADVTPENVPTSIVDTSSDSDD-------RLCLR 74 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC---CccCcCcCceEEEecccccch-------hHHHH
Confidence 345679999999999999999999998774432 111122211 222335667899999833221 12334
Q ss_pred HHHHHHHhcCCCCEEEEEEeccC-ccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 153 LSVKKFIRRSPPDIVLYFERLDL-ISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 153 ~~Ik~~ik~~~~dvVL~Vi~ld~-~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
++++ ++|+|++|-..+. .+.+......+-.+...+|.-...|+|+|-||.|...
T Consensus 75 ~Eir------kA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~ 129 (625)
T KOG1707|consen 75 KEIR------KADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGD 129 (625)
T ss_pred HHHh------hcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcc
Confidence 4443 5688888866654 3333344467777888888888999999999999874
No 305
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.92 E-value=1.8e-05 Score=74.53 Aligned_cols=102 Identities=21% Similarity=0.274 Sum_probs=63.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHh
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 160 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik 160 (704)
||++||+.|.||+||.|+|-|.....- -|. .+. ++.. -.|||||-.- .+....+.+.-..
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lyk-----KTQ---Ave--~~d~--~~IDTPGEy~-------~~~~~Y~aL~tt~- 62 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYK-----KTQ---AVE--FNDK--GDIDTPGEYF-------EHPRWYHALITTL- 62 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhc-----ccc---eee--ccCc--cccCCchhhh-------hhhHHHHHHHHHh-
Confidence 799999999999999999999774321 111 111 1111 3699999862 2344444443332
Q ss_pred cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 161 RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 161 ~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
..++++++|..++....... --+... ..+++|=|+||+|+..
T Consensus 63 -~dadvi~~v~~and~~s~f~-----p~f~~~----~~k~vIgvVTK~DLae 104 (148)
T COG4917 63 -QDADVIIYVHAANDPESRFP-----PGFLDI----GVKKVIGVVTKADLAE 104 (148)
T ss_pred -hccceeeeeecccCccccCC-----cccccc----cccceEEEEecccccc
Confidence 36799999977654322111 111222 2367999999999884
No 306
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.89 E-value=6.3e-05 Score=82.05 Aligned_cols=24 Identities=38% Similarity=0.501 Sum_probs=21.5
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHh
Q 005287 77 DFSIRILVLGKTGVGKSATINSIF 100 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLl 100 (704)
...+.|.|.|.+|+|||||++.|.
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~ 77 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALG 77 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHH
Confidence 457899999999999999999874
No 307
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=97.88 E-value=0.00013 Score=82.88 Aligned_cols=119 Identities=15% Similarity=0.106 Sum_probs=68.7
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCcccc--CCCCccceE----------E------E---EE--------e-----
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETD--AFQPATDCI----------R------E---VK--------G----- 122 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs--~~~~tT~~~----------~------~---~~--------~----- 122 (704)
...++|.++|.-..|||||+.+|+|....... -..+.|-+. . . .. .
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 34689999999999999999999986433221 011112110 0 0 00 0
Q ss_pred -eEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccE
Q 005287 123 -SVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNT 201 (704)
Q Consensus 123 -~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~v 201 (704)
..-...+.||||||.. .+.+.+...+ ..+|++++|++++......+..+.+. +.+.+| .+++
T Consensus 112 ~~~~~~~i~~IDtPGH~-----------~fi~~m~~g~--~~~D~alLVVda~~g~~~~qT~ehl~-i~~~lg---i~~i 174 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHD-----------ILMATMLNGA--AVMDAALLLIAANESCPQPQTSEHLA-AVEIMK---LKHI 174 (460)
T ss_pred cccccceEeeeeCCCHH-----------HHHHHHHHHH--hhCCEEEEEEECCCCccchhhHHHHH-HHHHcC---CCcE
Confidence 0012478999999952 2333333333 26799999988764211112222332 233333 2578
Q ss_pred EEEEEccCCCC
Q 005287 202 ILVMTHSSSTL 212 (704)
Q Consensus 202 IVVLTK~D~l~ 212 (704)
|+|+||+|+..
T Consensus 175 IVvlNKiDlv~ 185 (460)
T PTZ00327 175 IILQNKIDLVK 185 (460)
T ss_pred EEEEecccccC
Confidence 99999999873
No 308
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.87 E-value=0.00023 Score=80.41 Aligned_cols=128 Identities=15% Similarity=0.258 Sum_probs=80.3
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccce------------------------------------------
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDC------------------------------------------ 116 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~------------------------------------------ 116 (704)
-.+|+|||--.+||+|.+.+|.....+.-++..-.|+.
T Consensus 308 LPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~RM 387 (980)
T KOG0447|consen 308 LPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIELRM 387 (980)
T ss_pred CceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHHHH
Confidence 45999999999999999999976555544332222222
Q ss_pred -----------EEEEEeeEcC---eEEEEEECCCCCCcccchhh--hhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCC
Q 005287 117 -----------IREVKGSVNG---IKVTFIDTPGFLPSCVRNVK--RNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGF 180 (704)
Q Consensus 117 -----------~~~~~~~~~G---~~v~LIDTPGl~d~~~~~~~--~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~ 180 (704)
...+..++.| .++++||.||+..+...+.. ..+.+.+.-+.++. .|++|++|+.-....
T Consensus 388 r~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~--NPNAIILCIQDGSVD--- 462 (980)
T KOG0447|consen 388 RKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQ--NPNAIILCIQDGSVD--- 462 (980)
T ss_pred HhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhc--CCCeEEEEeccCCcc---
Confidence 2223334444 36799999999876544311 12334444445553 789999997533222
Q ss_pred CcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 181 SDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 181 ~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
.+......|...+.+. .+.+|+|+||.|++.
T Consensus 463 AERSnVTDLVsq~DP~-GrRTIfVLTKVDlAE 493 (980)
T KOG0447|consen 463 AERSIVTDLVSQMDPH-GRRTIFVLTKVDLAE 493 (980)
T ss_pred hhhhhHHHHHHhcCCC-CCeeEEEEeecchhh
Confidence 2334444555544433 689999999999874
No 309
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=5.2e-05 Score=87.62 Aligned_cols=119 Identities=18% Similarity=0.316 Sum_probs=70.5
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEe----------------------------------
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKG---------------------------------- 122 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~---------------------------------- 122 (704)
+...+|++.|++++||||+||+++-+.+...+ ..++|.....+.+
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g-~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~ 185 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSG-IGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKD 185 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCccc-ccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccc
Confidence 34689999999999999999999876654432 2233332211110
Q ss_pred ---------eE-cC------eEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHH
Q 005287 123 ---------SV-NG------IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLL 186 (704)
Q Consensus 123 ---------~~-~G------~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lL 186 (704)
-+ ++ ..+.+||.||+.-....+ ..+..+.. .+|+++||...... ....+.+++
T Consensus 186 ~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~t--------swid~~cl--daDVfVlV~NaEnt-lt~sek~Ff 254 (749)
T KOG0448|consen 186 LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELT--------SWIDSFCL--DADVFVLVVNAENT-LTLSEKQFF 254 (749)
T ss_pred cCcceEEEEEecCccchhhhccceeccCCCCCCchhhh--------HHHHHHhh--cCCeEEEEecCccH-hHHHHHHHH
Confidence 00 01 157899999997653211 12222222 78999999765432 112344444
Q ss_pred HHHHHHhcccccccEEEEEEccCCCC
Q 005287 187 KLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 187 k~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
....+. ..++.|+.||||...
T Consensus 255 ~~vs~~-----KpniFIlnnkwDasa 275 (749)
T KOG0448|consen 255 HKVSEE-----KPNIFILNNKWDASA 275 (749)
T ss_pred HHhhcc-----CCcEEEEechhhhhc
Confidence 444332 456667778999874
No 310
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.82 E-value=0.00012 Score=82.40 Aligned_cols=119 Identities=19% Similarity=0.202 Sum_probs=64.0
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCC--------Ccccc--CCCCccc------------eEEEEE---------eeEcCe
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQT--------KTETD--AFQPATD------------CIREVK---------GSVNGI 127 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~--------~a~vs--~~~~tT~------------~~~~~~---------~~~~G~ 127 (704)
.-.|+++|++||||||++..|+..- +..++ .+..... ...... ....+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC 300 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence 3489999999999999998885432 11111 1110000 000000 012356
Q ss_pred EEEEEECCCCCCcccchhhhhHHHHHHHHHHHh-cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEE
Q 005287 128 KVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR-RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMT 206 (704)
Q Consensus 128 ~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik-~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLT 206 (704)
.++||||||..... ......+..++. ...+.-+++|++.... ...+..+.+.|..- ...-+|+|
T Consensus 301 DlVlIDt~G~~~~d-------~~~~~~L~~ll~~~~~~~~~~LVl~a~~~------~~~l~~~~~~f~~~--~~~~vI~T 365 (424)
T PRK05703 301 DVILIDTAGRSQRD-------KRLIEELKALIEFSGEPIDVYLVLSATTK------YEDLKDIYKHFSRL--PLDGLIFT 365 (424)
T ss_pred CEEEEeCCCCCCCC-------HHHHHHHHHHHhccCCCCeEEEEEECCCC------HHHHHHHHHHhCCC--CCCEEEEe
Confidence 89999999996432 233444555554 2234455666444322 13455555555422 23368899
Q ss_pred ccCCCC
Q 005287 207 HSSSTL 212 (704)
Q Consensus 207 K~D~l~ 212 (704)
|.|...
T Consensus 366 KlDet~ 371 (424)
T PRK05703 366 KLDETS 371 (424)
T ss_pred cccccc
Confidence 999763
No 311
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=97.79 E-value=9.4e-05 Score=72.32 Aligned_cols=116 Identities=21% Similarity=0.188 Sum_probs=68.8
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccc--eEEEEEeeEcCe--EEEEEECCCCCCcccchhhhhHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATD--CIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIML 153 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~--~~~~~~~~~~G~--~v~LIDTPGl~d~~~~~~~~n~~il~ 153 (704)
..++|++||.+|||||||+-++..... .+..++|- +.+.....++|. ++.||||+|-..... ...
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~f---d~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRt--------LTp 78 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTF---DDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRT--------LTP 78 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhccc---CccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhc--------cCH
Confidence 458999999999999999988875432 22334443 444555566665 678999999843321 111
Q ss_pred HHHHHHhcCCCCEEEEEEeccCcc-CCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 154 SVKKFIRRSPPDIVLYFERLDLIS-MGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 154 ~Ik~~ik~~~~dvVL~Vi~ld~~t-~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
.+.+ ++..+++|-++.... .... -..++.|... ..+...--++|-||+|.-
T Consensus 79 ---SyyR--gaqGiIlVYDVT~Rdtf~kL-d~W~~Eld~Y-stn~diikmlVgNKiDke 130 (209)
T KOG0080|consen 79 ---SYYR--GAQGIILVYDVTSRDTFVKL-DIWLKELDLY-STNPDIIKMLVGNKIDKE 130 (209)
T ss_pred ---hHhc--cCceeEEEEEccchhhHHhH-HHHHHHHHhh-cCCccHhHhhhcccccch
Confidence 1222 667888886665432 1111 1234444332 222233446788999954
No 312
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=97.78 E-value=6.8e-05 Score=74.77 Aligned_cols=116 Identities=15% Similarity=0.110 Sum_probs=68.1
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCcccc----CCCCccceEEEEEeeEcCe--EEEEEECCCCCCcccchhhhhHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETD----AFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRK 150 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs----~~~~tT~~~~~~~~~~~G~--~v~LIDTPGl~d~~~~~~~~n~~ 150 (704)
...|+|+++|-+|||||||.|.....+-..-. ...-.|+++ .++++ .+.|+||+|-....
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev-----~Vd~~~vtlQiWDTAGQERFq--------- 72 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEV-----QVDDRSVTLQIWDTAGQERFQ--------- 72 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEE-----EEcCeEEEEEEEecccHHHhh---------
Confidence 34689999999999999999999876533221 111223332 23443 56799999974321
Q ss_pred HHHHHH-HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhc--ccccccEEEEEEccCCC
Q 005287 151 IMLSVK-KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFG--TAIWFNTILVMTHSSST 211 (704)
Q Consensus 151 il~~Ik-~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG--~~~~k~vIVVLTK~D~l 211 (704)
.+. .+. .++|+|++|.+++....-..-...-+.+...-. .....|+||+-||.|.-
T Consensus 73 ---sLg~aFY--RgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~ 131 (210)
T KOG0394|consen 73 ---SLGVAFY--RGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVD 131 (210)
T ss_pred ---hccccee--cCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCC
Confidence 111 111 378999999777654321111112222221111 12347999999999975
No 313
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.77 E-value=0.00016 Score=81.00 Aligned_cols=119 Identities=13% Similarity=0.124 Sum_probs=64.4
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCC-------Cccc--cCCCCccc----------eEEEEEe----------eEcCeEE
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQT-------KTET--DAFQPATD----------CIREVKG----------SVNGIKV 129 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~-------~a~v--s~~~~tT~----------~~~~~~~----------~~~G~~v 129 (704)
...|+++|++||||||++..|+... +..+ +.+..... ....... ...+..+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 4579999999999999999986422 1111 11111100 0000000 1136688
Q ss_pred EEEECCCCCCcccchhhhhHHHHHHHHHHHhcC---CCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEE
Q 005287 130 TFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRS---PPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMT 206 (704)
Q Consensus 130 ~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~---~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLT 206 (704)
+||||||+..... ..+.++.+++... .++-+++|+++.... ..+..+.+.|.. ....-+|+|
T Consensus 303 VLIDTaGr~~rd~-------~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~------~~~~~~~~~f~~--~~~~glIlT 367 (432)
T PRK12724 303 ILIDTAGYSHRNL-------EQLERMQSFYSCFGEKDSVENLLVLSSTSSY------HHTLTVLKAYES--LNYRRILLT 367 (432)
T ss_pred EEEeCCCCCccCH-------HHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH------HHHHHHHHHhcC--CCCCEEEEE
Confidence 9999999965432 2233444444321 244567775544322 234444444421 235577899
Q ss_pred ccCCCC
Q 005287 207 HSSSTL 212 (704)
Q Consensus 207 K~D~l~ 212 (704)
|.|...
T Consensus 368 KLDEt~ 373 (432)
T PRK12724 368 KLDEAD 373 (432)
T ss_pred cccCCC
Confidence 999874
No 314
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=97.77 E-value=0.0002 Score=84.85 Aligned_cols=116 Identities=15% Similarity=0.061 Sum_probs=76.7
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccc--cCC---------------CCccceEEEEEeeEcC-eEEEEEECCCCCC
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTET--DAF---------------QPATDCIREVKGSVNG-IKVTFIDTPGFLP 139 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~v--s~~---------------~~tT~~~~~~~~~~~G-~~v~LIDTPGl~d 139 (704)
.--+|.|+|+..+|||||.-+|+-..-.+. +.. .+.|-........+.+ ..++||||||.-|
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVD 88 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVD 88 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccc
Confidence 345899999999999999988863322211 111 1234455566778886 9999999999988
Q ss_pred cccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 140 SCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 140 ~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
... ++.+.++. .|.+++|++...--. .+-..++++..+. ..|.|+++||.|.+.
T Consensus 89 Ft~-----------EV~rslrv--lDgavvVvdaveGV~-~QTEtv~rqa~~~-----~vp~i~fiNKmDR~~ 142 (697)
T COG0480 89 FTI-----------EVERSLRV--LDGAVVVVDAVEGVE-PQTETVWRQADKY-----GVPRILFVNKMDRLG 142 (697)
T ss_pred cHH-----------HHHHHHHh--hcceEEEEECCCCee-ecHHHHHHHHhhc-----CCCeEEEEECccccc
Confidence 732 23334432 377777765543221 2444566666654 589999999999884
No 315
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.76 E-value=9.1e-05 Score=82.41 Aligned_cols=120 Identities=16% Similarity=0.205 Sum_probs=66.7
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCC----------CCccc--cCCCCccc-------e-----EEEEE---------eeE
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQ----------TKTET--DAFQPATD-------C-----IREVK---------GSV 124 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~----------~~a~v--s~~~~tT~-------~-----~~~~~---------~~~ 124 (704)
.+-.|+++|++||||||++..|+.. .+..+ +.+...+. + +.... ...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 4568999999999999999988642 11111 12111110 0 00000 012
Q ss_pred cCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCC-EEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEE
Q 005287 125 NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPD-IVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTIL 203 (704)
Q Consensus 125 ~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~d-vVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIV 203 (704)
.+..++||||||..... ...+.++.+++....++ -+++|+++.... ..+..+...|.. ....-+
T Consensus 253 ~~~DlVLIDTaGr~~~~-------~~~l~el~~~l~~~~~~~e~~LVlsat~~~------~~~~~~~~~~~~--~~~~~~ 317 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKD-------FMKLAEMKELLNACGRDAEFHLAVSSTTKT------SDVKEIFHQFSP--FSYKTV 317 (388)
T ss_pred CCCCEEEEcCCCCCccC-------HHHHHHHHHHHHhcCCCCeEEEEEcCCCCH------HHHHHHHHHhcC--CCCCEE
Confidence 46689999999986431 22355566666544433 577775544321 223333343321 124578
Q ss_pred EEEccCCCC
Q 005287 204 VMTHSSSTL 212 (704)
Q Consensus 204 VLTK~D~l~ 212 (704)
++||.|...
T Consensus 318 I~TKlDet~ 326 (388)
T PRK12723 318 IFTKLDETT 326 (388)
T ss_pred EEEeccCCC
Confidence 899999874
No 316
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.72 E-value=1.1e-05 Score=88.02 Aligned_cols=63 Identities=21% Similarity=0.263 Sum_probs=53.6
Q ss_pred CCCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcc
Q 005287 76 LDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSC 141 (704)
Q Consensus 76 ~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~ 141 (704)
....+.|.+||.||+||||+||+|-...+..+.++++.|.-.+.+.. -++|.|||+||+-..+
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItL---mkrIfLIDcPGvVyps 366 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITL---MKRIFLIDCPGVVYPS 366 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHH---HhceeEecCCCccCCC
Confidence 34579999999999999999999999999999999998876665443 3578999999998764
No 317
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=9.7e-05 Score=75.07 Aligned_cols=121 Identities=17% Similarity=0.138 Sum_probs=74.3
Q ss_pred CCCCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCe--EEEEEECCCCCCcccchhhhhHHHH
Q 005287 75 DLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIM 152 (704)
Q Consensus 75 ~~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~--~v~LIDTPGl~d~~~~~~~~n~~il 152 (704)
+.+.-++|+++|-+|||||-|+-...-.+...-+. ...-.+.......++|+ +..|+||+|-... +.+.
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~Sk-sTIGvef~t~t~~vd~k~vkaqIWDTAGQERy--------rAit 80 (222)
T KOG0087|consen 10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESK-STIGVEFATRTVNVDGKTVKAQIWDTAGQERY--------RAIT 80 (222)
T ss_pred ccceEEEEEEeCCCccchhHHHHHhcccccCcccc-cceeEEEEeeceeecCcEEEEeeecccchhhh--------cccc
Confidence 44556899999999999999998887655333221 11112233333445555 5689999998432 1111
Q ss_pred HHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc-cccccEEEEEEccCCCC
Q 005287 153 LSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT-AIWFNTILVMTHSSSTL 212 (704)
Q Consensus 153 ~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~-~~~k~vIVVLTK~D~l~ 212 (704)
.. +- .++..+|+|-++..... -..+.++|.+.... +....+++|-||+|+..
T Consensus 81 Sa---YY--rgAvGAllVYDITr~~T---fenv~rWL~ELRdhad~nivimLvGNK~DL~~ 133 (222)
T KOG0087|consen 81 SA---YY--RGAVGALLVYDITRRQT---FENVERWLKELRDHADSNIVIMLVGNKSDLNH 133 (222)
T ss_pred ch---hh--cccceeEEEEechhHHH---HHHHHHHHHHHHhcCCCCeEEEEeecchhhhh
Confidence 11 11 26788899977764431 11455555555432 23578889999999875
No 318
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.69 E-value=0.00036 Score=69.86 Aligned_cols=117 Identities=19% Similarity=0.207 Sum_probs=68.6
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEE--EEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIRE--VKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~--~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
.++++++|-+|||||.|+-..+......+.. .|--+.- ...++++ .++.|+||+|.... ..+.+
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd---~TiGvefg~r~~~id~k~IKlqiwDtaGqe~f--------rsv~~- 73 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHD---LTIGVEFGARMVTIDGKQIKLQIWDTAGQESF--------RSVTR- 73 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCcccccc---ceeeeeeceeEEEEcCceEEEEEEecCCcHHH--------HHHHH-
Confidence 4799999999999999999999876544432 2332221 1223444 57789999998432 22222
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc-cccccEEEEEEccCCCCCC
Q 005287 155 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT-AIWFNTILVMTHSSSTLPE 214 (704)
Q Consensus 155 Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~-~~~k~vIVVLTK~D~l~pd 214 (704)
.+-+ .+-.+|+|-+++.... +. .+-.+|.+.... ...--++++-||+|+....
T Consensus 74 --syYr--~a~GalLVydit~r~s-F~--hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR 127 (216)
T KOG0098|consen 74 --SYYR--GAAGALLVYDITRRES-FN--HLTSWLEDARQHSNENMVIMLIGNKSDLEARR 127 (216)
T ss_pred --HHhc--cCcceEEEEEccchhh-HH--HHHHHHHHHHHhcCCCcEEEEEcchhhhhccc
Confidence 2332 5567788877765431 11 233344333221 1123455666999987544
No 319
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=97.69 E-value=0.00038 Score=67.74 Aligned_cols=126 Identities=14% Similarity=0.193 Sum_probs=80.0
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEc-C--eEEEEEECCCCCCcccchhhhhHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVN-G--IKVTFIDTPGFLPSCVRNVKRNRKIML 153 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~-G--~~v~LIDTPGl~d~~~~~~~~n~~il~ 153 (704)
+..++|+|+|.-+|||++++..|+--+........+|..++.....+-+ | ..++|.||+|+..... ...
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~---eLp----- 78 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQ---ELP----- 78 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchh---hhh-----
Confidence 4678999999999999999988876555555556666666655544322 2 3789999999976521 111
Q ss_pred HHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCCCCC
Q 005287 154 SVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPEG 215 (704)
Q Consensus 154 ~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~pde 215 (704)
+.|+. -+|.+++|-+..... .++-..+++.-.+.+......|++++-|+.|...|.+
T Consensus 79 --rhy~q--~aDafVLVYs~~d~e-Sf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~ 135 (198)
T KOG3883|consen 79 --RHYFQ--FADAFVLVYSPMDPE-SFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPRE 135 (198)
T ss_pred --HhHhc--cCceEEEEecCCCHH-HHHHHHHHHHHHhhccccccccEEEEechhhcccchh
Confidence 12332 468888886544322 1122334444344443344578999999999886543
No 320
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=0.00014 Score=89.71 Aligned_cols=126 Identities=17% Similarity=0.172 Sum_probs=75.7
Q ss_pred EEEEEeCCCCcHHHHHHHH-hCCCCccc----cCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHH
Q 005287 81 RILVLGKTGVGKSATINSI-FDQTKTET----DAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSV 155 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsL-lG~~~a~v----s~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~I 155 (704)
=-+|||++|+||||++..- ..-..... .-..+.|+.|..... ..-++|||.|-.-...+....+...+..+
T Consensus 127 Wy~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~----deaVlIDtaGry~~q~s~~~~~~~~W~~f 202 (1188)
T COG3523 127 WYMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCDWWFT----DEAVLIDTAGRYITQDSADEVDRAEWLGF 202 (1188)
T ss_pred ceEEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccCcccc----cceEEEcCCcceecccCcchhhHHHHHHH
Confidence 3579999999999988443 32222221 111223788875553 34599999999866542223445555544
Q ss_pred HHHHh----cCCCCEEEEEEeccCcc-CCCCcH-HH-------HHHHHHHhcccccccEEEEEEccCCCC
Q 005287 156 KKFIR----RSPPDIVLYFERLDLIS-MGFSDF-PL-------LKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 156 k~~ik----~~~~dvVL~Vi~ld~~t-~~~~D~-~l-------Lk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
-..++ ..+++.|++.+++.... .+..+. .. +++|.+.+ .+..|+++++||.|+++
T Consensus 203 L~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL--~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 203 LGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETL--HARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhh--ccCCceEEEEecccccc
Confidence 33333 34789899998775432 211221 12 33344443 35589999999999985
No 321
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.00045 Score=66.82 Aligned_cols=119 Identities=21% Similarity=0.159 Sum_probs=72.7
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccce----EEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDC----IREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIM 152 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~----~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il 152 (704)
.+-++|++||..||||+-|+..+...- +.. ..+.|-. ++.+...-...++.||||+|-... ..+.
T Consensus 5 kflfkivlvgnagvgktclvrrftqgl-fpp--gqgatigvdfmiktvev~gekiklqiwdtagqerf--------rsit 73 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRFTQGL-FPP--GQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERF--------RSIT 73 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhhhccC-CCC--CCCceeeeeEEEEEEEECCeEEEEEEeeccchHHH--------HHHH
Confidence 456899999999999999998876432 211 1122321 222222223457889999997322 2333
Q ss_pred HHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCCC
Q 005287 153 LSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 213 (704)
Q Consensus 153 ~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~p 213 (704)
++ +-+ .+|++++|-+++....-..-...++.|.+.-. ...-.|+|-||.|+...
T Consensus 74 qs---yyr--sahalilvydiscqpsfdclpewlreie~yan--~kvlkilvgnk~d~~dr 127 (213)
T KOG0095|consen 74 QS---YYR--SAHALILVYDISCQPSFDCLPEWLREIEQYAN--NKVLKILVGNKIDLADR 127 (213)
T ss_pred HH---Hhh--hcceEEEEEecccCcchhhhHHHHHHHHHHhh--cceEEEeeccccchhhh
Confidence 33 222 57999999877754322234467777776522 23456889999998754
No 322
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.60 E-value=0.00043 Score=79.01 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.2
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
.-.|++||++||||||++..|.+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHH
Confidence 457999999999999999999763
No 323
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.60 E-value=0.00055 Score=77.79 Aligned_cols=118 Identities=14% Similarity=0.159 Sum_probs=82.8
Q ss_pred CCCCCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeE-cCeEEEEEECCCCCCcccchhhhhHHHH
Q 005287 74 PDLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSV-NGIKVTFIDTPGFLPSCVRNVKRNRKIM 152 (704)
Q Consensus 74 ~~~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~-~G~~v~LIDTPGl~d~~~~~~~~n~~il 152 (704)
....++..|-|+|.---|||||+.+|-+..++.. ...+.|.++-.+..+. .|..++|.||||-.-.
T Consensus 148 ~l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~-E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF------------ 214 (683)
T KOG1145|consen 148 LLEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAG-EAGGITQHIGAFTVTLPSGKSITFLDTPGHAAF------------ 214 (683)
T ss_pred hcCCCCCeEEEeecccCChhhHHHHHhhCceehh-hcCCccceeceEEEecCCCCEEEEecCCcHHHH------------
Confidence 3445677899999999999999999998887665 3456788766555433 7899999999998422
Q ss_pred HHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 153 LSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 153 ~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
..++. --..-.|+|++|+..|.-- -.++++.|+.. ++...|+|+.+||+|..
T Consensus 215 ~aMRa-RGA~vtDIvVLVVAadDGV----mpQT~EaIkhA--k~A~VpiVvAinKiDkp 266 (683)
T KOG1145|consen 215 SAMRA-RGANVTDIVVLVVAADDGV----MPQTLEAIKHA--KSANVPIVVAINKIDKP 266 (683)
T ss_pred HHHHh-ccCccccEEEEEEEccCCc----cHhHHHHHHHH--HhcCCCEEEEEeccCCC
Confidence 11111 0011358999998776432 23566666654 44578999999999954
No 324
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.58 E-value=0.00013 Score=77.52 Aligned_cols=119 Identities=17% Similarity=0.110 Sum_probs=68.5
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCC------Ccccc--CCCC-c-----c----ceEEEEE-e-------------eEcC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQT------KTETD--AFQP-A-----T----DCIREVK-G-------------SVNG 126 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~------~a~vs--~~~~-t-----T----~~~~~~~-~-------------~~~G 126 (704)
.-+|+++|++|+||||++..|.+.- ...++ .... . + ..+.... . ...+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCC
Confidence 4599999999999999999886531 11111 1100 0 0 0111111 0 1125
Q ss_pred eEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEE
Q 005287 127 IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMT 206 (704)
Q Consensus 127 ~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLT 206 (704)
..++||||||..... ...++++..++....++.+++|+++.... +-+..+.+.|.. ....-+++|
T Consensus 155 ~D~ViIDt~Gr~~~~-------~~~l~el~~~~~~~~~~~~~LVl~a~~~~------~d~~~~~~~f~~--~~~~~~I~T 219 (270)
T PRK06731 155 VDYILIDTAGKNYRA-------SETVEEMIETMGQVEPDYICLTLSASMKS------KDMIEIITNFKD--IHIDGIVFT 219 (270)
T ss_pred CCEEEEECCCCCcCC-------HHHHHHHHHHHhhhCCCeEEEEEcCccCH------HHHHHHHHHhCC--CCCCEEEEE
Confidence 689999999996542 33455555565555778888886544322 123333444443 245567899
Q ss_pred ccCCCC
Q 005287 207 HSSSTL 212 (704)
Q Consensus 207 K~D~l~ 212 (704)
|.|...
T Consensus 220 KlDet~ 225 (270)
T PRK06731 220 KFDETA 225 (270)
T ss_pred eecCCC
Confidence 999874
No 325
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.58 E-value=0.0001 Score=76.77 Aligned_cols=77 Identities=9% Similarity=0.100 Sum_probs=34.4
Q ss_pred EEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhc--ccccccEEEEE
Q 005287 128 KVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFG--TAIWFNTILVM 205 (704)
Q Consensus 128 ~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG--~~~~k~vIVVL 205 (704)
.+.|+||||-.+-- ........+-+.+.....-+++++++...... ....+..+--.+. .....|.|.|+
T Consensus 92 ~y~l~DtPGQiElf-----~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~---~~~f~s~~L~s~s~~~~~~lP~vnvl 163 (238)
T PF03029_consen 92 DYLLFDTPGQIELF-----THSDSGRKIVERLQKNGRLVVVFLVDSSFCSD---PSKFVSSLLLSLSIMLRLELPHVNVL 163 (238)
T ss_dssp SEEEEE--SSHHHH-----HHSHHHHHHHHTSSS----EEEEEE-GGG-SS---HHHHHHHHHHHHHHHHHHTSEEEEEE
T ss_pred cEEEEeCCCCEEEE-----EechhHHHHHHHHhhhcceEEEEEEecccccC---hhhHHHHHHHHHHHHhhCCCCEEEee
Confidence 78999999986541 22233344444444323346677755543331 1122222110000 11247999999
Q ss_pred EccCCCC
Q 005287 206 THSSSTL 212 (704)
Q Consensus 206 TK~D~l~ 212 (704)
||+|++.
T Consensus 164 sK~Dl~~ 170 (238)
T PF03029_consen 164 SKIDLLS 170 (238)
T ss_dssp --GGGS-
T ss_pred eccCccc
Confidence 9999985
No 326
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.57 E-value=0.00034 Score=68.13 Aligned_cols=21 Identities=29% Similarity=0.558 Sum_probs=19.2
Q ss_pred EEEEeCCCCcHHHHHHHHhCC
Q 005287 82 ILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 82 IlVVGkTGvGKSTLINsLlG~ 102 (704)
++++|..|+|||||++.++..
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 679999999999999999865
No 327
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.57 E-value=0.00032 Score=75.35 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=21.8
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhC
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG 101 (704)
.....|.|+|++|+|||||++.|..
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999864
No 328
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.52 E-value=0.00018 Score=75.89 Aligned_cols=27 Identities=26% Similarity=0.480 Sum_probs=23.0
Q ss_pred CCCCCeEEEEEeCCCCcHHHHHHHHhC
Q 005287 75 DLDFSIRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 75 ~~~~~lrIlVVGkTGvGKSTLINsLlG 101 (704)
....++-|+|+|-.|+||+|+...|.+
T Consensus 15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~ 41 (366)
T KOG1532|consen 15 AIQRPVIILVVGMAGSGKTTFMQRLNS 41 (366)
T ss_pred cccCCcEEEEEecCCCCchhHHHHHHH
Confidence 345678999999999999999988854
No 329
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=97.49 E-value=0.00029 Score=68.16 Aligned_cols=114 Identities=11% Similarity=0.063 Sum_probs=75.5
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHH
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 158 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ 158 (704)
.+.+.++|--++||||++|.++-..-.. .-..|.-......+.+...+.++|.||-... ..+++. |
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~e---dmiptvGfnmrk~tkgnvtiklwD~gGq~rf--------rsmWer---y 85 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLE---DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF--------RSMWER---Y 85 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchh---hhcccccceeEEeccCceEEEEEecCCCccH--------HHHHHH---H
Confidence 5789999999999999999987533221 1234555666666677889999999998543 333433 3
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccc--cccEEEEEEccCCC
Q 005287 159 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAI--WFNTILVMTHSSST 211 (704)
Q Consensus 159 ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~--~k~vIVVLTK~D~l 211 (704)
.+ +.++++||++...... -...-.+|...+.... ..|+.|+-||.|.-
T Consensus 86 cR--~v~aivY~VDaad~~k---~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~ 135 (186)
T KOG0075|consen 86 CR--GVSAIVYVVDAADPDK---LEASRSELHDLLDKPSLTGIPLLVLGNKIDLP 135 (186)
T ss_pred hh--cCcEEEEEeecCCccc---chhhHHHHHHHhcchhhcCCcEEEecccccCc
Confidence 32 6799999976644221 1122334444444433 47899999999965
No 330
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.48 E-value=0.00043 Score=78.22 Aligned_cols=121 Identities=18% Similarity=0.183 Sum_probs=68.7
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhC------CCCccc--cCCCCccc----------eEEEEEe---------------e
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFD------QTKTET--DAFQPATD----------CIREVKG---------------S 123 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG------~~~a~v--s~~~~tT~----------~~~~~~~---------------~ 123 (704)
..+..|+++|.+|+||||++-.|+. ..+..+ +.+.+... .+..+.. .
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 4577899999999999999988852 222222 11111110 0000100 0
Q ss_pred EcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEE
Q 005287 124 VNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTIL 203 (704)
Q Consensus 124 ~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIV 203 (704)
.....++||||||.... +...++++........+|.+++|++.... ...+..... |.... ...-+
T Consensus 173 ~~~~DvVIIDTAGr~~~-------d~~lm~El~~l~~~~~pdevlLVvda~~g------q~av~~a~~-F~~~l-~i~gv 237 (437)
T PRK00771 173 FKKADVIIVDTAGRHAL-------EEDLIEEMKEIKEAVKPDEVLLVIDATIG------QQAKNQAKA-FHEAV-GIGGI 237 (437)
T ss_pred hhcCCEEEEECCCcccc-------hHHHHHHHHHHHHHhcccceeEEEecccc------HHHHHHHHH-HHhcC-CCCEE
Confidence 12347899999999643 24555666555444478888888765432 123333322 33221 23567
Q ss_pred EEEccCCCC
Q 005287 204 VMTHSSSTL 212 (704)
Q Consensus 204 VLTK~D~l~ 212 (704)
|+||.|...
T Consensus 238 IlTKlD~~a 246 (437)
T PRK00771 238 IITKLDGTA 246 (437)
T ss_pred EEecccCCC
Confidence 899999764
No 331
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=97.48 E-value=0.00042 Score=67.07 Aligned_cols=113 Identities=19% Similarity=0.185 Sum_probs=65.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccc--eEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATD--CIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 155 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~--~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~I 155 (704)
++.+|+|-||||||||+-.+.... +.-+ + -+|. +.......+.| .++.|+||+|-.. -..+..
T Consensus 9 fkllIigDsgVGKssLl~rF~ddt-Fs~s-Y-itTiGvDfkirTv~i~G~~VkLqIwDtAGqEr--------Frtits-- 75 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDT-FSGS-Y-ITTIGVDFKIRTVDINGDRVKLQIWDTAGQER--------FRTITS-- 75 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcc-cccc-e-EEEeeeeEEEEEeecCCcEEEEEEeecccHHH--------HHHHHH--
Confidence 456899999999999998776542 2111 1 1222 22222223344 5788999999732 122222
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 156 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 156 k~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
.+- .++|++++|-+......-.+-...++.+... -...|-++|-||.|..
T Consensus 76 -tyy--rgthgv~vVYDVTn~ESF~Nv~rWLeei~~n---cdsv~~vLVGNK~d~~ 125 (198)
T KOG0079|consen 76 -TYY--RGTHGVIVVYDVTNGESFNNVKRWLEEIRNN---CDSVPKVLVGNKNDDP 125 (198)
T ss_pred -HHc--cCCceEEEEEECcchhhhHhHHHHHHHHHhc---CccccceecccCCCCc
Confidence 222 2789999997665332111233444444443 2246789999999965
No 332
>PRK10867 signal recognition particle protein; Provisional
Probab=97.44 E-value=0.00052 Score=77.45 Aligned_cols=120 Identities=21% Similarity=0.233 Sum_probs=66.3
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHh-------CCCCccc--cCCCCccc----------eEEEEEe----------------
Q 005287 78 FSIRILVLGKTGVGKSATINSIF-------DQTKTET--DAFQPATD----------CIREVKG---------------- 122 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLl-------G~~~a~v--s~~~~tT~----------~~~~~~~---------------- 122 (704)
.+..|+++|.+|+||||++-.|+ |..+..+ +.+.+... .+..+..
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~ 178 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEE 178 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHH
Confidence 46789999999999999887774 3333333 22222210 0000110
Q ss_pred -eEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccE
Q 005287 123 -SVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNT 201 (704)
Q Consensus 123 -~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~v 201 (704)
...+..++||||||..... ...+.++........++-+++|++.. +. .......+.+.+.+ ...
T Consensus 179 a~~~~~DvVIIDTaGrl~~d-------~~lm~eL~~i~~~v~p~evllVlda~--~g-q~av~~a~~F~~~~-----~i~ 243 (433)
T PRK10867 179 AKENGYDVVIVDTAGRLHID-------EELMDELKAIKAAVNPDEILLVVDAM--TG-QDAVNTAKAFNEAL-----GLT 243 (433)
T ss_pred HHhcCCCEEEEeCCCCcccC-------HHHHHHHHHHHHhhCCCeEEEEEecc--cH-HHHHHHHHHHHhhC-----CCC
Confidence 1134679999999986431 33444444443334678888886542 21 12223333333322 245
Q ss_pred EEEEEccCCCC
Q 005287 202 ILVMTHSSSTL 212 (704)
Q Consensus 202 IVVLTK~D~l~ 212 (704)
-+|+||.|...
T Consensus 244 giIlTKlD~~~ 254 (433)
T PRK10867 244 GVILTKLDGDA 254 (433)
T ss_pred EEEEeCccCcc
Confidence 67889999653
No 333
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.42 E-value=0.00097 Score=75.86 Aligned_cols=114 Identities=17% Similarity=0.176 Sum_probs=79.9
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEc---CeEEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVN---GIKVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~---G~~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
++.-|.++|.---|||||+-.|-+..++.. ...+.|.++-.+....+ ...++|+||||-.-.. .
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~-EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt------------~ 70 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAG-EAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFT------------A 70 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccc-cCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHH------------H
Confidence 456789999999999999999998776554 34577989888888774 4799999999984321 1
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 155 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 155 Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
++. =-..=.|++++|+.+|.--. .++.+.|... .....|+|+.+||+|..
T Consensus 71 mRa-RGa~vtDIaILVVa~dDGv~----pQTiEAI~ha--k~a~vP~iVAiNKiDk~ 120 (509)
T COG0532 71 MRA-RGASVTDIAILVVAADDGVM----PQTIEAINHA--KAAGVPIVVAINKIDKP 120 (509)
T ss_pred HHh-cCCccccEEEEEEEccCCcc----hhHHHHHHHH--HHCCCCEEEEEecccCC
Confidence 110 00012589999988775432 2344444443 23368999999999987
No 334
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=97.36 E-value=0.0012 Score=75.60 Aligned_cols=118 Identities=17% Similarity=0.205 Sum_probs=75.4
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHh---CCC------------------Cc---------cccCCCCccceEEEEEeeEcCe
Q 005287 78 FSIRILVLGKTGVGKSATINSIF---DQT------------------KT---------ETDAFQPATDCIREVKGSVNGI 127 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLl---G~~------------------~a---------~vs~~~~tT~~~~~~~~~~~G~ 127 (704)
..++.+|+|...+|||||.-.|+ |.- -+ ..-...+.|.++....++-.-.
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 56899999999999999998884 210 00 0011235666777777777778
Q ss_pred EEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccC--ccCCC----CcHHHHHHHHHHhcccccccE
Q 005287 128 KVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDL--ISMGF----SDFPLLKLMTEVFGTAIWFNT 201 (704)
Q Consensus 128 ~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~--~t~~~----~D~~lLk~L~~~fG~~~~k~v 201 (704)
.++|+|+||..+... ..+.. ...+|+.++|++++. +.... +-.+.+ .+.+.+| -..+
T Consensus 256 ~~tliDaPGhkdFi~----------nmi~g---~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha-~llr~Lg---i~ql 318 (603)
T KOG0458|consen 256 IVTLIDAPGHKDFIP----------NMISG---ASQADVAVLVVDASTGEFESGFDPGGQTREHA-LLLRSLG---ISQL 318 (603)
T ss_pred eEEEecCCCccccch----------hhhcc---ccccceEEEEEECCcchhhhccCCCCchHHHH-HHHHHcC---cceE
Confidence 999999999766521 11222 236788888876642 22111 122333 3344555 4689
Q ss_pred EEEEEccCCCC
Q 005287 202 ILVMTHSSSTL 212 (704)
Q Consensus 202 IVVLTK~D~l~ 212 (704)
||++||.|.+.
T Consensus 319 ivaiNKmD~V~ 329 (603)
T KOG0458|consen 319 IVAINKMDLVS 329 (603)
T ss_pred EEEeecccccC
Confidence 99999999884
No 335
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.34 E-value=0.0026 Score=62.15 Aligned_cols=72 Identities=25% Similarity=0.284 Sum_probs=41.7
Q ss_pred CeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEE
Q 005287 126 GIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVM 205 (704)
Q Consensus 126 G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVL 205 (704)
+..++||||||.... ....+..+..+.....++.+++|++.. +. ......+..+.+..+ -..+|+
T Consensus 82 ~~d~viiDt~g~~~~-------~~~~l~~l~~l~~~~~~~~~~lVv~~~--~~-~~~~~~~~~~~~~~~-----~~~vil 146 (173)
T cd03115 82 NFDVVIVDTAGRLQI-------DENLMEELKKIKRVVKPDEVLLVVDAM--TG-QDAVNQAKAFNEALG-----ITGVIL 146 (173)
T ss_pred CCCEEEEECcccchh-------hHHHHHHHHHHHhhcCCCeEEEEEECC--CC-hHHHHHHHHHHhhCC-----CCEEEE
Confidence 567899999999643 123334444333323578899997753 21 122333444433332 357888
Q ss_pred EccCCCC
Q 005287 206 THSSSTL 212 (704)
Q Consensus 206 TK~D~l~ 212 (704)
||.|...
T Consensus 147 tk~D~~~ 153 (173)
T cd03115 147 TKLDGDA 153 (173)
T ss_pred ECCcCCC
Confidence 9999764
No 336
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.00017 Score=80.76 Aligned_cols=126 Identities=24% Similarity=0.324 Sum_probs=79.4
Q ss_pred CCCCeEEEEEeCCCCcHHHHHHHHh---CCCCccc-----cCCCCcc-----ceEE--------EE------E-------
Q 005287 76 LDFSIRILVLGKTGVGKSATINSIF---DQTKTET-----DAFQPAT-----DCIR--------EV------K------- 121 (704)
Q Consensus 76 ~~~~lrIlVVGkTGvGKSTLINsLl---G~~~a~v-----s~~~~tT-----~~~~--------~~------~------- 121 (704)
...+..|.++|-.||||||-+-.|+ -+..+.+ +.+.++. +++. .+ .
T Consensus 375 ~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~v 454 (587)
T KOG0781|consen 375 RKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAAGV 454 (587)
T ss_pred cCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCChHHH
Confidence 3478999999999999999998883 1222221 2222211 0000 00 0
Q ss_pred -------eeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhc
Q 005287 122 -------GSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFG 194 (704)
Q Consensus 122 -------~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG 194 (704)
....|..+++|||+|.... +...+..+.++++..+||.|+||-.+---+ ....-++.+.+.++
T Consensus 455 ak~AI~~a~~~gfDVvLiDTAGR~~~-------~~~lm~~l~k~~~~~~pd~i~~vgealvg~---dsv~q~~~fn~al~ 524 (587)
T KOG0781|consen 455 AKEAIQEARNQGFDVVLIDTAGRMHN-------NAPLMTSLAKLIKVNKPDLILFVGEALVGN---DSVDQLKKFNRALA 524 (587)
T ss_pred HHHHHHHHHhcCCCEEEEeccccccC-------ChhHHHHHHHHHhcCCCceEEEehhhhhCc---HHHHHHHHHHHHHh
Confidence 1235778999999999643 367788899999989999999994321111 23345566666665
Q ss_pred ccccccE--EEEEEccCCC
Q 005287 195 TAIWFNT--ILVMTHSSST 211 (704)
Q Consensus 195 ~~~~k~v--IVVLTK~D~l 211 (704)
....... -+++||.|..
T Consensus 525 ~~~~~r~id~~~ltk~dtv 543 (587)
T KOG0781|consen 525 DHSTPRLIDGILLTKFDTV 543 (587)
T ss_pred cCCCccccceEEEEeccch
Confidence 4432222 4789999966
No 337
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.0013 Score=63.68 Aligned_cols=117 Identities=17% Similarity=0.111 Sum_probs=66.2
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccc--cCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTET--DAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~v--s~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
-++|+|+|.+.|||+|++-+-++...... +.+ +.--.++.+...-...++.++||+|...- ..+.-
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTv-GidFKvKTvyr~~kRiklQiwDTagqEry--------rtiTT--- 88 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTV-GIDFKVKTVYRSDKRIKLQIWDTAGQERY--------RTITT--- 88 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeee-eeeEEEeEeeecccEEEEEEEecccchhh--------hHHHH---
Confidence 35999999999999999999988653221 111 11112222222223468899999998431 11111
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 157 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
.+. .+++.++++.++.....-..-......|+.. .....++|+|-||+|+-
T Consensus 89 ayy--RgamgfiLmyDitNeeSf~svqdw~tqIkty--sw~naqvilvgnKCDmd 139 (193)
T KOG0093|consen 89 AYY--RGAMGFILMYDITNEESFNSVQDWITQIKTY--SWDNAQVILVGNKCDMD 139 (193)
T ss_pred HHh--hccceEEEEEecCCHHHHHHHHHHHHHheee--eccCceEEEEecccCCc
Confidence 122 2778999986664322100111122222222 12236899999999976
No 338
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.27 E-value=0.0013 Score=73.75 Aligned_cols=112 Identities=20% Similarity=0.243 Sum_probs=70.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCc-----cc-------cC---CCCccceEEEEEeeEcCeEEEEEECCCCCCcccchh
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKT-----ET-------DA---FQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNV 145 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a-----~v-------s~---~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~ 145 (704)
+|+||-.---|||||+..|+.+.-. .+ ++ -.+.|-=.+.....++|.++.||||||--|....
T Consensus 7 NIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE-- 84 (603)
T COG1217 7 NIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE-- 84 (603)
T ss_pred eeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch--
Confidence 7999999999999999999864211 01 11 1233444444556789999999999999887431
Q ss_pred hhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 146 KRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 146 ~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
+.+.++ -.|.||+++++..-.. .+...+++...+. .-+-|+|+||+|..
T Consensus 85 ---------VERvl~--MVDgvlLlVDA~EGpM-PQTrFVlkKAl~~-----gL~PIVVvNKiDrp 133 (603)
T COG1217 85 ---------VERVLS--MVDGVLLLVDASEGPM-PQTRFVLKKALAL-----GLKPIVVINKIDRP 133 (603)
T ss_pred ---------hhhhhh--hcceEEEEEEcccCCC-CchhhhHHHHHHc-----CCCcEEEEeCCCCC
Confidence 223332 3477766655433222 1333444433332 35668899999975
No 339
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.26 E-value=0.00034 Score=73.64 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=19.7
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHh
Q 005287 78 FSIRILVLGKTGVGKSATINSIF 100 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLl 100 (704)
...+|.|.|+||+|||||++.|.
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~ 50 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALI 50 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHH
Confidence 46899999999999999999995
No 340
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.25 E-value=0.0017 Score=66.46 Aligned_cols=116 Identities=9% Similarity=0.146 Sum_probs=68.8
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccc--eEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATD--CIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~--~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
+-.|+++|.+++|||+|+=.|.-.. .+++-+ .........+...+++||-||-..- ...+.
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs------~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rl-----------R~kl~ 100 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGS------HRGTVTSIEPNEATYRLGSENVTLVDLPGHSRL-----------RRKLL 100 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCC------ccCeeeeeccceeeEeecCcceEEEeCCCcHHH-----------HHHHH
Confidence 3579999999999999987765432 112211 1223333445556899999998422 22222
Q ss_pred HHHh-cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHh----cccccccEEEEEEccCCCCC
Q 005287 157 KFIR-RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVF----GTAIWFNTILVMTHSSSTLP 213 (704)
Q Consensus 157 ~~ik-~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~f----G~~~~k~vIVVLTK~D~l~p 213 (704)
.+++ ...+-.++||++...+.. +-..+.+.+...+ +..-..|+.+..||-|+...
T Consensus 101 e~~~~~~~akaiVFVVDSa~f~k--~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA 160 (238)
T KOG0090|consen 101 EYLKHNYSAKAIVFVVDSATFLK--NVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA 160 (238)
T ss_pred HHccccccceeEEEEEeccccch--hhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc
Confidence 3332 124567888865544332 3334444444433 33345789999999999854
No 341
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.17 E-value=0.001 Score=72.21 Aligned_cols=122 Identities=26% Similarity=0.386 Sum_probs=69.6
Q ss_pred CCCCeEEEEEeCCCCcHHHHHHHHhC------CCCccc--cCCCCc----------cceEEEEEe---------------
Q 005287 76 LDFSIRILVLGKTGVGKSATINSIFD------QTKTET--DAFQPA----------TDCIREVKG--------------- 122 (704)
Q Consensus 76 ~~~~lrIlVVGkTGvGKSTLINsLlG------~~~a~v--s~~~~t----------T~~~~~~~~--------------- 122 (704)
...+..|++||-.|+||||+|-.|.. ..+... +.+... ...+..+..
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~ 215 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQ 215 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHH
Confidence 34588999999999999999999853 221111 111110 001111111
Q ss_pred --eEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHH---HHhcC---CCCEEEEEEeccCccCCCCcHHHHHHHHHHhc
Q 005287 123 --SVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK---FIRRS---PPDIVLYFERLDLISMGFSDFPLLKLMTEVFG 194 (704)
Q Consensus 123 --~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~---~ik~~---~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG 194 (704)
.-.|..++||||+|...+. ...+.++++ .++.. .||-++++++. .+. .+-..-.+.+.+..+
T Consensus 216 ~Akar~~DvvliDTAGRLhnk-------~nLM~EL~KI~rV~~k~~~~ap~e~llvlDA--ttG-qnal~QAk~F~eav~ 285 (340)
T COG0552 216 AAKARGIDVVLIDTAGRLHNK-------KNLMDELKKIVRVIKKDDPDAPHEILLVLDA--TTG-QNALSQAKIFNEAVG 285 (340)
T ss_pred HHHHcCCCEEEEeCcccccCc-------hhHHHHHHHHHHHhccccCCCCceEEEEEEc--ccC-hhHHHHHHHHHHhcC
Confidence 1246789999999998664 233444443 33222 35668888443 332 134445556666543
Q ss_pred ccccccEEEEEEccCCCC
Q 005287 195 TAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 195 ~~~~k~vIVVLTK~D~l~ 212 (704)
-.-+|+||.|-..
T Consensus 286 -----l~GiIlTKlDgtA 298 (340)
T COG0552 286 -----LDGIILTKLDGTA 298 (340)
T ss_pred -----CceEEEEecccCC
Confidence 3467999999553
No 342
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.16 E-value=0.0017 Score=73.24 Aligned_cols=120 Identities=22% Similarity=0.210 Sum_probs=65.7
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhC-------CCCccc--cCCCCccc------------eEEEEE---------------
Q 005287 78 FSIRILVLGKTGVGKSATINSIFD-------QTKTET--DAFQPATD------------CIREVK--------------- 121 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG-------~~~a~v--s~~~~tT~------------~~~~~~--------------- 121 (704)
.+..|+++|.+|+||||++-.|+. ..+..+ +.+.+... .+....
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~ 177 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEY 177 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHH
Confidence 467899999999999999765532 222222 12222110 001000
Q ss_pred eeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccE
Q 005287 122 GSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNT 201 (704)
Q Consensus 122 ~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~v 201 (704)
....+..++||||||..... ...+.++..+.....++-+++|++.. +. .......+.+.+.. ...
T Consensus 178 ~~~~~~DvVIIDTaGr~~~d-------~~l~~eL~~i~~~~~p~e~lLVvda~--tg-q~~~~~a~~f~~~v-----~i~ 242 (428)
T TIGR00959 178 AKENGFDVVIVDTAGRLQID-------EELMEELAAIKEILNPDEILLVVDAM--TG-QDAVNTAKTFNERL-----GLT 242 (428)
T ss_pred HHhcCCCEEEEeCCCccccC-------HHHHHHHHHHHHhhCCceEEEEEecc--ch-HHHHHHHHHHHhhC-----CCC
Confidence 01134579999999986431 33444454444334678888886643 21 12233333333332 245
Q ss_pred EEEEEccCCCC
Q 005287 202 ILVMTHSSSTL 212 (704)
Q Consensus 202 IVVLTK~D~l~ 212 (704)
-+|+||.|...
T Consensus 243 giIlTKlD~~~ 253 (428)
T TIGR00959 243 GVVLTKLDGDA 253 (428)
T ss_pred EEEEeCccCcc
Confidence 77899999653
No 343
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.08 E-value=0.0026 Score=61.55 Aligned_cols=20 Identities=35% Similarity=0.592 Sum_probs=18.1
Q ss_pred EEEEeCCCCcHHHHHHHHhC
Q 005287 82 ILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 82 IlVVGkTGvGKSTLINsLlG 101 (704)
|.++|++|+||||++..|..
T Consensus 2 i~~~G~~GsGKTt~~~~l~~ 21 (148)
T cd03114 2 IGITGVPGAGKSTLIDALIT 21 (148)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999998854
No 344
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=97.07 E-value=0.0024 Score=72.76 Aligned_cols=116 Identities=15% Similarity=0.065 Sum_probs=74.5
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCcc--------------ccCCCCccceEEEEEeeEcC---eEEEEEECCCCCCc
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTE--------------TDAFQPATDCIREVKGSVNG---IKVTFIDTPGFLPS 140 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~--------------vs~~~~tT~~~~~~~~~~~G---~~v~LIDTPGl~d~ 140 (704)
+--|+.||-.---|||||.-.|+....++ +-.-.+.|-..+.....+.+ .-+.+|||||--|.
T Consensus 59 ~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDF 138 (650)
T KOG0462|consen 59 NIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDF 138 (650)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccc
Confidence 33489999999999999999996433211 11224567666666666655 78999999999887
Q ss_pred ccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 141 CVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 141 ~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
+.. +.+.+.. .+.+|+|+++..-- ..+++.-+...|.. .-.+|+|+||+|+-.
T Consensus 139 s~E-----------VsRslaa--c~G~lLvVDA~qGv----qAQT~anf~lAfe~--~L~iIpVlNKIDlp~ 191 (650)
T KOG0462|consen 139 SGE-----------VSRSLAA--CDGALLVVDASQGV----QAQTVANFYLAFEA--GLAIIPVLNKIDLPS 191 (650)
T ss_pred cce-----------ehehhhh--cCceEEEEEcCcCc----hHHHHHHHHHHHHc--CCeEEEeeeccCCCC
Confidence 431 2233322 37777776554321 22344444444432 367899999999764
No 345
>PRK14845 translation initiation factor IF-2; Provisional
Probab=97.00 E-value=0.005 Score=76.07 Aligned_cols=103 Identities=13% Similarity=0.101 Sum_probs=64.0
Q ss_pred CcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC------------------eEEEEEECCCCCCcccchhhhhHHH
Q 005287 90 VGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG------------------IKVTFIDTPGFLPSCVRNVKRNRKI 151 (704)
Q Consensus 90 vGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G------------------~~v~LIDTPGl~d~~~~~~~~n~~i 151 (704)
++||||+-+|-+..++.. ...+.|.++-.+....+. ..+.||||||.... ..+
T Consensus 472 ~~KTtLLD~iR~t~v~~~-EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F--------~~l 542 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKK-EAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAF--------TSL 542 (1049)
T ss_pred cccccHHHHHhCCCcccc-cCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHH--------HHH
Confidence 459999999999887443 345667765554443321 13899999995322 111
Q ss_pred HHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 152 MLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 152 l~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
..+.. ..+|++++|++++.. ...+....+..+... ..|+|+|+||+|+.+
T Consensus 543 ---r~~g~--~~aDivlLVVDa~~G-i~~qT~e~I~~lk~~-----~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 543 ---RKRGG--SLADLAVLVVDINEG-FKPQTIEAINILRQY-----KTPFVVAANKIDLIP 592 (1049)
T ss_pred ---HHhhc--ccCCEEEEEEECccc-CCHhHHHHHHHHHHc-----CCCEEEEEECCCCcc
Confidence 11111 357999999877532 112344455544442 479999999999874
No 346
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.96 E-value=0.0034 Score=57.34 Aligned_cols=103 Identities=22% Similarity=0.293 Sum_probs=57.3
Q ss_pred EEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhc
Q 005287 82 ILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRR 161 (704)
Q Consensus 82 IlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~ 161 (704)
|++.|++|+||||++..++..- +.++.-+|.+-+.+.... .....+...+.. .+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l----------------------~~~~~~i~~~~~~~~~~~--~~~~~i~~~~~~-~~~ 55 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL----------------------GFPFIEIDGSELISSYAG--DSEQKIRDFFKK-AKK 55 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT----------------------TSEEEEEETTHHHTSSTT--HHHHHHHHHHHH-HHH
T ss_pred CEEECcCCCCeeHHHHHHHhhc----------------------cccccccccccccccccc--cccccccccccc-ccc
Confidence 7899999999999999998643 233455666655422111 122223333333 222
Q ss_pred CCCCEEEEEEeccCccCCC------CcHHHHHHHHHHhccccc--ccEEEEEEccC
Q 005287 162 SPPDIVLYFERLDLISMGF------SDFPLLKLMTEVFGTAIW--FNTILVMTHSS 209 (704)
Q Consensus 162 ~~~dvVL~Vi~ld~~t~~~------~D~~lLk~L~~~fG~~~~--k~vIVVLTK~D 209 (704)
....+|+++++++...... ....++..+...+..... .++++|+|--+
T Consensus 56 ~~~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 56 SAKPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp TSTSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred cccceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 2225899998888654321 123456666665544333 34666655443
No 347
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.82 E-value=0.0041 Score=61.46 Aligned_cols=114 Identities=17% Similarity=0.202 Sum_probs=70.8
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
..-+++++|--|+|||||++.|-.......-+ |.++..-...+.|.+++.+|.-|-... .+. -++
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qhvP----TlHPTSE~l~Ig~m~ftt~DLGGH~qA--------rr~---wkd 83 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVP----TLHPTSEELSIGGMTFTTFDLGGHLQA--------RRV---WKD 83 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccccccCC----CcCCChHHheecCceEEEEccccHHHH--------HHH---HHH
Confidence 35689999999999999999998776655422 333333345678999999998887321 222 234
Q ss_pred HHhcCCCCEEEEEEec-cCccCCCCcHHHHHHHHHHhccc--ccccEEEEEEccCCCC
Q 005287 158 FIRRSPPDIVLYFERL-DLISMGFSDFPLLKLMTEVFGTA--IWFNTILVMTHSSSTL 212 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~l-d~~t~~~~D~~lLk~L~~~fG~~--~~k~vIVVLTK~D~l~ 212 (704)
|+. .+|.++|.+++ |..+. .+ ....+...+..+ .+.|++++.||+|...
T Consensus 84 yf~--~v~~iv~lvda~d~er~-~e---s~~eld~ll~~e~la~vp~lilgnKId~p~ 135 (193)
T KOG0077|consen 84 YFP--QVDAIVYLVDAYDQERF-AE---SKKELDALLSDESLATVPFLILGNKIDIPY 135 (193)
T ss_pred HHh--hhceeEeeeehhhHHHh-HH---HHHHHHHHHhHHHHhcCcceeecccccCCC
Confidence 553 45777777544 22221 11 122222222212 4789999999999763
No 348
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.81 E-value=0.0034 Score=67.32 Aligned_cols=27 Identities=30% Similarity=0.346 Sum_probs=23.2
Q ss_pred CCCCCCeEEEEEeCCCCcHHHHHHHHh
Q 005287 74 PDLDFSIRILVLGKTGVGKSATINSIF 100 (704)
Q Consensus 74 ~~~~~~lrIlVVGkTGvGKSTLINsLl 100 (704)
+..++..+|.|.|.||+||||||-.|.
T Consensus 46 p~tG~a~viGITG~PGaGKSTli~~L~ 72 (323)
T COG1703 46 PRTGNAHVIGITGVPGAGKSTLIEALG 72 (323)
T ss_pred hcCCCCcEEEecCCCCCchHHHHHHHH
Confidence 345567899999999999999999884
No 349
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.76 E-value=0.01 Score=66.45 Aligned_cols=122 Identities=21% Similarity=0.259 Sum_probs=74.0
Q ss_pred CCCCeEEEEEeCCCCcHHHHHHHHhC------CCCccc--cCCCCccc----------eEEEEE----------------
Q 005287 76 LDFSIRILVLGKTGVGKSATINSIFD------QTKTET--DAFQPATD----------CIREVK---------------- 121 (704)
Q Consensus 76 ~~~~lrIlVVGkTGvGKSTLINsLlG------~~~a~v--s~~~~tT~----------~~~~~~---------------- 121 (704)
...+..|+++|--|+||||+.-.|.. ..+..+ +.+.|.-- .+..+.
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~ 176 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALE 176 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHH
Confidence 44578999999999999999888852 232222 12222110 000011
Q ss_pred -eeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccccccc
Q 005287 122 -GSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFN 200 (704)
Q Consensus 122 -~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~ 200 (704)
....+..++||||+|...- ++..+.+++..-....||-+|+|++. -+. ..-..+.+.+.+..+ -
T Consensus 177 ~ak~~~~DvvIvDTAGRl~i-------de~Lm~El~~Ik~~~~P~E~llVvDa--m~G-QdA~~~A~aF~e~l~-----i 241 (451)
T COG0541 177 KAKEEGYDVVIVDTAGRLHI-------DEELMDELKEIKEVINPDETLLVVDA--MIG-QDAVNTAKAFNEALG-----I 241 (451)
T ss_pred HHHHcCCCEEEEeCCCcccc-------cHHHHHHHHHHHhhcCCCeEEEEEec--ccc-hHHHHHHHHHhhhcC-----C
Confidence 1123457999999999643 35666666655444589999999543 221 123455666665543 4
Q ss_pred EEEEEEccCCCC
Q 005287 201 TILVMTHSSSTL 212 (704)
Q Consensus 201 vIVVLTK~D~l~ 212 (704)
+-||+||.|--.
T Consensus 242 tGvIlTKlDGda 253 (451)
T COG0541 242 TGVILTKLDGDA 253 (451)
T ss_pred ceEEEEcccCCC
Confidence 467899999664
No 350
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.74 E-value=0.0014 Score=69.93 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=21.5
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCC
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
..-.|+++|++||||||++..|...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4558999999999999999998753
No 351
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=96.73 E-value=0.0033 Score=65.13 Aligned_cols=126 Identities=15% Similarity=0.174 Sum_probs=73.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC-eEEEEEECCCCCCcccchhhhhHHHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG-IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 158 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G-~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ 158 (704)
-+|+++|+||+||||+=-.++....+.-....+.|-++.......-| .-+.++|.-|-... -+.....-+..
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~f-------men~~~~q~d~ 77 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEF-------MENYLSSQEDN 77 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHH-------HHHHHhhcchh
Confidence 47999999999999988777765544443445667777765554444 67788998876311 01111111111
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHH-HHHHHhcccccccEEEEEEccCCCCCC
Q 005287 159 IRRSPPDIVLYFERLDLISMGFSDFPLLK-LMTEVFGTAIWFNTILVMTHSSSTLPE 214 (704)
Q Consensus 159 ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk-~L~~~fG~~~~k~vIVVLTK~D~l~pd 214 (704)
+ -+..++++||.++..... ..|....+ .|...+.....-.+.+.++|.|+...+
T Consensus 78 i-F~nV~vli~vFDves~e~-~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d 132 (295)
T KOG3886|consen 78 I-FRNVQVLIYVFDVESREM-EKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQED 132 (295)
T ss_pred h-heeheeeeeeeeccchhh-hhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccc
Confidence 1 125689999987764432 12332222 222233333345667788999998543
No 352
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.69 E-value=0.0081 Score=58.62 Aligned_cols=116 Identities=18% Similarity=0.160 Sum_probs=61.3
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEE--EEeeEc--CeEEEEEECCCCCCcccchhhhhHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIRE--VKGSVN--GIKVTFIDTPGFLPSCVRNVKRNRKIML 153 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~--~~~~~~--G~~v~LIDTPGl~d~~~~~~~~n~~il~ 153 (704)
.-++++|+|+.|+|||-|+..++......-+ +-|-.+.- ....++ .+++.|+||+|-... ..
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkDds---sHTiGveFgSrIinVGgK~vKLQIWDTAGQErF-----------RS 73 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENKFKDDS---SHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERF-----------RS 73 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhhhcccc---cceeeeeecceeeeecCcEEEEEEeecccHHHH-----------HH
Confidence 3479999999999999999888754322111 11221111 111233 357889999997322 22
Q ss_pred HHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccc-ccccEEEEEEccCCCC
Q 005287 154 SVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA-IWFNTILVMTHSSSTL 212 (704)
Q Consensus 154 ~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~-~~k~vIVVLTK~D~l~ 212 (704)
..+.+-+ ++-..|+|-++.... .-..+-.+|.+..-.. ...-+|++-||.|+-+
T Consensus 74 VtRsYYR--GAAGAlLVYD~Tsrd---sfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~ 128 (214)
T KOG0086|consen 74 VTRSYYR--GAAGALLVYDITSRD---SFNALTNWLTDARTLASPNIVVILCGNKKDLDP 128 (214)
T ss_pred HHHHHhc--cccceEEEEeccchh---hHHHHHHHHHHHHhhCCCcEEEEEeCChhhcCh
Confidence 2223332 556667775554322 1223445555543211 1233444458888653
No 353
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.68 E-value=0.014 Score=64.43 Aligned_cols=125 Identities=17% Similarity=0.228 Sum_probs=72.6
Q ss_pred CCCCCCeEEEEEeCCCCcHHHHHHHHhC------CCCccc--cCCCC---------ccceEEEEEe--------------
Q 005287 74 PDLDFSIRILVLGKTGVGKSATINSIFD------QTKTET--DAFQP---------ATDCIREVKG-------------- 122 (704)
Q Consensus 74 ~~~~~~lrIlVVGkTGvGKSTLINsLlG------~~~a~v--s~~~~---------tT~~~~~~~~-------------- 122 (704)
+....+-.|++||--|+||||++-.++- .....+ +.+.. .|+.-..+.+
T Consensus 96 ~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~eg 175 (483)
T KOG0780|consen 96 PKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEG 175 (483)
T ss_pred cccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHH
Confidence 4455667899999999999999998853 222222 11221 1221111111
Q ss_pred ----eEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccccc
Q 005287 123 ----SVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIW 198 (704)
Q Consensus 123 ----~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~ 198 (704)
.-++..++|+||.|.... +....++++.+.+...||.|+||++.. .. +......+.|...+.
T Consensus 176 v~~fKke~fdvIIvDTSGRh~q-------e~sLfeEM~~v~~ai~Pd~vi~VmDas--iG-----Qaae~Qa~aFk~~vd 241 (483)
T KOG0780|consen 176 VDRFKKENFDVIIVDTSGRHKQ-------EASLFEEMKQVSKAIKPDEIIFVMDAS--IG-----QAAEAQARAFKETVD 241 (483)
T ss_pred HHHHHhcCCcEEEEeCCCchhh-------hHHHHHHHHHHHhhcCCCeEEEEEecc--cc-----HhHHHHHHHHHHhhc
Confidence 124568999999999643 244555555544445899999996543 21 123333344433333
Q ss_pred ccEEEEEEccCCCCC
Q 005287 199 FNTILVMTHSSSTLP 213 (704)
Q Consensus 199 k~vIVVLTK~D~l~p 213 (704)
-.-+++||.|--..
T Consensus 242 -vg~vIlTKlDGhak 255 (483)
T KOG0780|consen 242 -VGAVILTKLDGHAK 255 (483)
T ss_pred -cceEEEEecccCCC
Confidence 23567899996543
No 354
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=96.64 E-value=0.011 Score=67.63 Aligned_cols=112 Identities=22% Similarity=0.323 Sum_probs=64.4
Q ss_pred CCCCCCeEEEEEeCCCCcHHHHHHHHhCCCCccc-cCCCC-ccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHH
Q 005287 74 PDLDFSIRILVLGKTGVGKSATINSIFDQTKTET-DAFQP-ATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKI 151 (704)
Q Consensus 74 ~~~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~v-s~~~~-tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~i 151 (704)
++...++-++|||+||.||||||.+|..+-...+ +.+.+ .|. +. -..+++++..+|. +- ..+
T Consensus 64 ~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTv----vs--gK~RRiTflEcp~--Dl--------~~m 127 (1077)
T COG5192 64 KDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITV----VS--GKTRRITFLECPS--DL--------HQM 127 (1077)
T ss_pred ccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEE----ee--cceeEEEEEeChH--HH--------HHH
Confidence 3556678899999999999999999976432211 22222 221 11 1345788888882 11 111
Q ss_pred HHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 152 MLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 152 l~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
-.+.+ -+|+||+.++.. +.. ++.+++.|.-.. ..-...++-|+||.|+..
T Consensus 128 -iDvaK-----IaDLVlLlIdgn-fGf---EMETmEFLnil~-~HGmPrvlgV~ThlDlfk 177 (1077)
T COG5192 128 -IDVAK-----IADLVLLLIDGN-FGF---EMETMEFLNILI-SHGMPRVLGVVTHLDLFK 177 (1077)
T ss_pred -HhHHH-----hhheeEEEeccc-cCc---eehHHHHHHHHh-hcCCCceEEEEeeccccc
Confidence 11222 248998886543 222 334444443221 122457788999999984
No 355
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.61 E-value=0.035 Score=60.55 Aligned_cols=114 Identities=13% Similarity=0.181 Sum_probs=63.3
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCcc-ccC-CCCccceEEE----EEe---------eEcCeEEEEEECCCCCCccc
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTE-TDA-FQPATDCIRE----VKG---------SVNGIKVTFIDTPGFLPSCV 142 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~-vs~-~~~tT~~~~~----~~~---------~~~G~~v~LIDTPGl~d~~~ 142 (704)
..++|.++|.-.+||+||..+|..-.-.. .+. ..++++.... ... .-...++++||.||-.
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHa---- 81 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHA---- 81 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcH----
Confidence 35899999999999999999995322111 111 1122222111 000 1123477999999983
Q ss_pred chhhhhHHHHHHHHHHHhcCCCCEEEEEEeccC--ccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 143 RNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDL--ISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 143 ~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~--~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
...+.+..-. .-+|+.++|+++.. .++..+.. ++ |.-.-++.|||+||.|.++
T Consensus 82 -------sLIRtiigga--qiiDlm~lviDv~kG~QtQtAEcL-ii-------g~~~c~klvvvinkid~lp 136 (522)
T KOG0461|consen 82 -------SLIRTIIGGA--QIIDLMILVIDVQKGKQTQTAECL-II-------GELLCKKLVVVINKIDVLP 136 (522)
T ss_pred -------HHHHHHHhhh--heeeeeeEEEehhcccccccchhh-hh-------hhhhccceEEEEecccccc
Confidence 2222222111 13588888877653 23222221 22 2222468899999999984
No 356
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.61 E-value=0.0082 Score=67.16 Aligned_cols=114 Identities=17% Similarity=0.128 Sum_probs=79.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCccc--cCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHH
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTET--DAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 158 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~v--s~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ 158 (704)
.|+..|.---|||||+.++.|.....- -.-.++|.+...+........+.|||.||..+. .+.+...
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~-----------i~~miag 70 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDF-----------ISNLLAG 70 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHH-----------HHHHHhh
Confidence 477888999999999999998754333 344688999998888888889999999999543 2222222
Q ss_pred HhcCCCCEEEEEEecc-CccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCCC
Q 005287 159 IRRSPPDIVLYFERLD-LISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 213 (704)
Q Consensus 159 ik~~~~dvVL~Vi~ld-~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~p 213 (704)
+ +.+|.+++|++.+ .... +..+.+.. .+.|| .++.|+|+||+|...+
T Consensus 71 ~--~~~d~alLvV~~deGl~~--qtgEhL~i-Ldllg---i~~giivltk~D~~d~ 118 (447)
T COG3276 71 L--GGIDYALLVVAADEGLMA--QTGEHLLI-LDLLG---IKNGIIVLTKADRVDE 118 (447)
T ss_pred h--cCCceEEEEEeCccCcch--hhHHHHHH-HHhcC---CCceEEEEeccccccH
Confidence 2 3779999998774 2321 22233322 34444 3577999999998853
No 357
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=96.50 E-value=0.019 Score=55.54 Aligned_cols=116 Identities=14% Similarity=0.142 Sum_probs=71.4
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC-eEEEEEECCCCCCcccchhhhhHHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG-IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 155 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G-~~v~LIDTPGl~d~~~~~~~~n~~il~~I 155 (704)
+..++|+++|--|+||+|++..|.+++.....+..+.. .......| ..++++|.-|-..- ..++..
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn----~k~v~~~g~f~LnvwDiGGqr~I--------RpyWsN- 81 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFN----TKKVEYDGTFHLNVWDIGGQRGI--------RPYWSN- 81 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhhccccCCcc----eEEEeecCcEEEEEEecCCcccc--------chhhhh-
Confidence 56799999999999999999999999877654333322 22333344 78999999887432 223332
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccc--ccccEEEEEEccCCCC
Q 005287 156 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA--IWFNTILVMTHSSSTL 212 (704)
Q Consensus 156 k~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~--~~k~vIVVLTK~D~l~ 212 (704)
|.. ..|.++||++....+. -+ ++-..+.+..... ...|+.+-.||-|++.
T Consensus 82 --Yye--nvd~lIyVIDS~D~kr--fe-E~~~el~ELleeeKl~~vpvlIfankQdllt 133 (185)
T KOG0074|consen 82 --YYE--NVDGLIYVIDSTDEKR--FE-EISEELVELLEEEKLAEVPVLIFANKQDLLT 133 (185)
T ss_pred --hhh--ccceEEEEEeCCchHh--HH-HHHHHHHHHhhhhhhhccceeehhhhhHHHh
Confidence 222 6799999976432221 11 2333333332221 2356666667777764
No 358
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=96.49 E-value=0.01 Score=58.62 Aligned_cols=119 Identities=20% Similarity=0.101 Sum_probs=66.9
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEE----EEEeeE-cCeEEEEEECCCCCCcccchhhhhHHHHH
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIR----EVKGSV-NGIKVTFIDTPGFLPSCVRNVKRNRKIML 153 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~----~~~~~~-~G~~v~LIDTPGl~d~~~~~~~~n~~il~ 153 (704)
+++++|||-+-||||+|+...+....+..++ .|..+. .+.... ...++.++||+|-... ..+.
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaelsd---ptvgvdffarlie~~pg~riklqlwdtagqerf--------rsit- 75 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSD---PTVGVDFFARLIELRPGYRIKLQLWDTAGQERF--------RSIT- 75 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccCC---CccchHHHHHHHhcCCCcEEEEEEeeccchHHH--------HHHH-
Confidence 5799999999999999999998766555442 122111 111111 1246789999997322 2222
Q ss_pred HHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCCC
Q 005287 154 SVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 213 (704)
Q Consensus 154 ~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~p 213 (704)
+.+-+ ..-.+|+|.++.....-..-...++......+.....-+.+|-+|+|+...
T Consensus 76 --ksyyr--nsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~Sq 131 (213)
T KOG0091|consen 76 --KSYYR--NSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQ 131 (213)
T ss_pred --HHHhh--cccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhh
Confidence 22332 234567776665443211223344444444442223344567789998743
No 359
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.44 E-value=0.0098 Score=59.53 Aligned_cols=114 Identities=11% Similarity=0.054 Sum_probs=71.7
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
...+|+++|-=|+||||+++.|--.+...+ ..|-....-...+.+..+.++|.-|-..- ...++ .
T Consensus 16 ~e~~IlmlGLD~AGKTTILykLk~~E~vtt----vPTiGfnVE~v~ykn~~f~vWDvGGq~k~--------R~lW~---~ 80 (181)
T KOG0070|consen 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT----VPTIGFNVETVEYKNISFTVWDVGGQEKL--------RPLWK---H 80 (181)
T ss_pred ceEEEEEEeccCCCceeeeEeeccCCcccC----CCccccceeEEEEcceEEEEEecCCCccc--------ccchh---h
Confidence 468999999999999999999855554443 22333333334456899999999998432 12222 2
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccc--ccccEEEEEEccCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA--IWFNTILVMTHSSST 211 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~--~~k~vIVVLTK~D~l 211 (704)
+.. ..+.++||++.....+ -...-+.+.+.+... ...|+++..||-|..
T Consensus 81 Y~~--~t~~lIfVvDS~Dr~R---i~eak~eL~~~l~~~~l~~~~llv~aNKqD~~ 131 (181)
T KOG0070|consen 81 YFQ--NTQGLIFVVDSSDRER---IEEAKEELHRMLAEPELRNAPLLVFANKQDLP 131 (181)
T ss_pred hcc--CCcEEEEEEeCCcHHH---HHHHHHHHHHHHcCcccCCceEEEEechhhcc
Confidence 332 4588888865443221 112444455554433 357888888999965
No 360
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=96.37 E-value=0.0033 Score=66.07 Aligned_cols=105 Identities=19% Similarity=0.270 Sum_probs=70.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHh
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 160 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik 160 (704)
++-++|-|.+||||+++.|+|.. ..+.++..+|-..........|-++.+.|.||+.+....+..+...+... .+
T Consensus 61 ~vg~vgFPSvGksTl~~~l~g~~-s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviav----ar 135 (358)
T KOG1487|consen 61 RVGFVGFPSVGKSTLLSKLTGTF-SEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAV----AR 135 (358)
T ss_pred eeeEEecCccchhhhhhhhcCCC-CccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEE----ee
Confidence 88999999999999999999976 44444556666666666667899999999999998765442233322211 11
Q ss_pred cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc
Q 005287 161 RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT 195 (704)
Q Consensus 161 ~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~ 195 (704)
..+++++|++.-.. .....+++.-.+-||.
T Consensus 136 --tcnli~~vld~~kp---~~hk~~ie~eleg~gi 165 (358)
T KOG1487|consen 136 --TCNLIFIVLDVLKP---LSHKKIIEKELEGFGI 165 (358)
T ss_pred --cccEEEEEeeccCc---ccHHHHHHHhhhccee
Confidence 34677777543322 2355666666666664
No 361
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.31 E-value=0.0021 Score=62.85 Aligned_cols=55 Identities=25% Similarity=0.486 Sum_probs=36.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGF 137 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl 137 (704)
.|+|+|++|+||||+++.|.+..........-+|+... .+...|..+.++++..+
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~--~g~~~~~~~~~~~~~~~ 57 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPR--PGEVDGVDYFFVSKEEF 57 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCccccccccceeeCCC--CCCcCCcEEEEecHHHH
Confidence 58999999999999999999865433322233444333 22345666777766554
No 362
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.20 E-value=0.0023 Score=64.42 Aligned_cols=53 Identities=26% Similarity=0.498 Sum_probs=37.7
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEEC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDT 134 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDT 134 (704)
..-|+|.|++||||||++..|+...... -++..||+.... ++.+|+.+.||+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~~l~-~SVS~TTR~pR~--gEv~G~dY~Fvs~ 56 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDDKLR-FSVSATTRKPRP--GEVDGVDYFFVTE 56 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhcCeE-EEEEeccCCCCC--CCcCCceeEeCCH
Confidence 4668999999999999999999888222 234466766553 3456776666543
No 363
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.13 E-value=0.063 Score=51.98 Aligned_cols=114 Identities=11% Similarity=0.062 Sum_probs=68.6
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHH
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 158 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ 158 (704)
+++|+.+|-.++||+|++-.|.-.....+ -.|.-...-..++.+..+.++|.-|-..- +..++ ++
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~~~~~----ipTvGFnvetVtykN~kfNvwdvGGqd~i--------RplWr---hY 81 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQSVTT----IPTVGFNVETVTYKNVKFNVWDVGGQDKI--------RPLWR---HY 81 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCCCccc----ccccceeEEEEEeeeeEEeeeeccCchhh--------hHHHH---hh
Confidence 68999999999999999988864432222 11333333334567888999998886321 22222 23
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccccc--ccEEEEEEccCCCC
Q 005287 159 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIW--FNTILVMTHSSSTL 212 (704)
Q Consensus 159 ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~--k~vIVVLTK~D~l~ 212 (704)
.. +...++||++...... -...-.++.++.+.... .++.|..||-|+..
T Consensus 82 y~--gtqglIFV~Dsa~~dr---~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~ 132 (180)
T KOG0071|consen 82 YT--GTQGLIFVVDSADRDR---IEEARNELHRIINDREMRDAIILILANKQDLPD 132 (180)
T ss_pred cc--CCceEEEEEeccchhh---HHHHHHHHHHHhCCHhhhcceEEEEecCccccc
Confidence 32 4567888865433221 12345556666654322 45566679988763
No 364
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=96.10 E-value=0.038 Score=60.57 Aligned_cols=117 Identities=16% Similarity=0.118 Sum_probs=70.7
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccc----------cC----------------------CCCccceEEEEEeeEc
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTET----------DA----------------------FQPATDCIREVKGSVN 125 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~v----------s~----------------------~~~tT~~~~~~~~~~~ 125 (704)
..||.+-+|.---||||||-.|+-...+.. +. -.+.|-++....+.-.
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~ 84 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE 84 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence 468999999999999999999975433221 10 0123334444444456
Q ss_pred CeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEE
Q 005287 126 GIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVM 205 (704)
Q Consensus 126 G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVL 205 (704)
.++++|.||||-... .+.+. .-.+.+|+.+++++.- ..-.....--..|...+| -+++++.+
T Consensus 85 KRkFIiADTPGHeQY-----------TRNMa--TGASTadlAIlLVDAR--~Gvl~QTrRHs~I~sLLG---IrhvvvAV 146 (431)
T COG2895 85 KRKFIIADTPGHEQY-----------TRNMA--TGASTADLAILLVDAR--KGVLEQTRRHSFIASLLG---IRHVVVAV 146 (431)
T ss_pred cceEEEecCCcHHHH-----------hhhhh--cccccccEEEEEEecc--hhhHHHhHHHHHHHHHhC---CcEEEEEE
Confidence 789999999998422 22111 1113568777765432 110011123344555655 46999999
Q ss_pred EccCCCC
Q 005287 206 THSSSTL 212 (704)
Q Consensus 206 TK~D~l~ 212 (704)
||+|+..
T Consensus 147 NKmDLvd 153 (431)
T COG2895 147 NKMDLVD 153 (431)
T ss_pred eeecccc
Confidence 9999984
No 365
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=96.08 E-value=0.008 Score=61.17 Aligned_cols=116 Identities=16% Similarity=0.121 Sum_probs=69.0
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEc-Ce--EEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVN-GI--KVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~-G~--~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
..++++|||-.++|||+|+-+..-.. +... ..|+--+-......++ |+ .+.++||+|-.+- ++ ++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~-fp~~-yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedY--------Dr-lR- 70 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNA-FPEE-YVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDY--------DR-LR- 70 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCc-Cccc-ccCeEEccceEEEEecCCCEEEEeeeecCCCccc--------cc-cc-
Confidence 46899999999999999887665431 2111 1122112222334453 65 5689999998654 11 11
Q ss_pred HHHHHhcCCCCEEEEEEeccCccC-CCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 155 VKKFIRRSPPDIVLYFERLDLISM-GFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 155 Ik~~ik~~~~dvVL~Vi~ld~~t~-~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
.+.-...|++|+|..++.... ...-...+-+++... ...|+|+|.||.|+-
T Consensus 71 ---plsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~c---p~vpiiLVGtk~DLr 122 (198)
T KOG0393|consen 71 ---PLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHC---PNVPIILVGTKADLR 122 (198)
T ss_pred ---ccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhC---CCCCEEEEeehHHhh
Confidence 223347799999877665431 101122333444433 347999999999987
No 366
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=96.05 E-value=0.028 Score=63.07 Aligned_cols=114 Identities=11% Similarity=0.078 Sum_probs=69.0
Q ss_pred CeEEEEEeCCCCcHHHHHHHHh--CCCCccccCC------CCccc-------------eEEEEEeeEcCeEEEEEECCCC
Q 005287 79 SIRILVLGKTGVGKSATINSIF--DQTKTETDAF------QPATD-------------CIREVKGSVNGIKVTFIDTPGF 137 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLl--G~~~a~vs~~------~~tT~-------------~~~~~~~~~~G~~v~LIDTPGl 137 (704)
.-+.+||-.|-+|||||--.|+ |......+.+ ..+|. ....-.+.+.+..+.|.||||-
T Consensus 12 RRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGH 91 (528)
T COG4108 12 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGH 91 (528)
T ss_pred hcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCc
Confidence 3467999999999999998774 3221111111 11111 1223345678999999999999
Q ss_pred CCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 138 LPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 138 ~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
.|.+. ...+.+. -+|.+++|++...- .+.++++.+.-.. -...|++-.+||.|.-
T Consensus 92 eDFSE-------DTYRtLt------AvDsAvMVIDaAKG----iE~qT~KLfeVcr--lR~iPI~TFiNKlDR~ 146 (528)
T COG4108 92 EDFSE-------DTYRTLT------AVDSAVMVIDAAKG----IEPQTLKLFEVCR--LRDIPIFTFINKLDRE 146 (528)
T ss_pred cccch-------hHHHHHH------hhheeeEEEecccC----ccHHHHHHHHHHh--hcCCceEEEeeccccc
Confidence 88742 2223222 35888888654321 3445666554331 1247888888888865
No 367
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.96 E-value=0.0071 Score=61.40 Aligned_cols=60 Identities=18% Similarity=0.329 Sum_probs=35.9
Q ss_pred CCCCCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECC
Q 005287 74 PDLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTP 135 (704)
Q Consensus 74 ~~~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTP 135 (704)
.....+.-|+|+|++|+|||||++.|.............+|+.... .+.+|..+.+++..
T Consensus 8 ~~~~~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~--~e~~g~~y~fv~~~ 67 (206)
T PRK14738 8 NKPAKPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRP--GEIDGVDYHFVTPE 67 (206)
T ss_pred CCCCCCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCC--CCCCCCeeeeCCHH
Confidence 3445667889999999999999999986532111223344443322 23445555555443
No 368
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=95.96 E-value=0.0037 Score=62.38 Aligned_cols=119 Identities=17% Similarity=0.169 Sum_probs=64.4
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceE--EEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCI--REVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~--~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
..-++++|+|--+|||||+|.+.+..- +..+.-...-.+. ..+........+.+|||+|-.+. +.+.+.
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgi-fTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEf--------DaItkA 88 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGI-FTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEF--------DAITKA 88 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccc-cccccccccchhhhhHHHHhhHHHHHHHHHHhccchhH--------HHHHHH
Confidence 346899999999999999999987422 1110000000000 01111223456678999987433 222222
Q ss_pred HHHHHhcCCCCEEEEEEecc-CccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCCC
Q 005287 155 VKKFIRRSPPDIVLYFERLD-LISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 213 (704)
Q Consensus 155 Ik~~ik~~~~dvVL~Vi~ld-~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~p 213 (704)
+-+ ++.++++|+.-. ..+. ..++.+-.+.-..--..|+++|-||+|++..
T Consensus 89 ---yyr--gaqa~vLVFSTTDr~SF----ea~~~w~~kv~~e~~~IPtV~vqNKIDlved 139 (246)
T KOG4252|consen 89 ---YYR--GAQASVLVFSTTDRYSF----EATLEWYNKVQKETERIPTVFVQNKIDLVED 139 (246)
T ss_pred ---Hhc--cccceEEEEecccHHHH----HHHHHHHHHHHHHhccCCeEEeeccchhhHh
Confidence 222 667777775432 2221 1233333333222335899999999999843
No 369
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=95.90 E-value=0.044 Score=64.64 Aligned_cols=113 Identities=18% Similarity=0.105 Sum_probs=69.1
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEee------------------EcCeEEEEEECCCCCCc
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGS------------------VNGIKVTFIDTPGFLPS 140 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~------------------~~G~~v~LIDTPGl~d~ 140 (704)
+.-+.|+|..-+|||-|+..|-+.++... ...+.|..+-...+. +.-..+.+|||||....
T Consensus 475 SPIcCilGHVDTGKTKlld~ir~tNVqeg-eaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF 553 (1064)
T KOG1144|consen 475 SPICCILGHVDTGKTKLLDKIRGTNVQEG-EAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF 553 (1064)
T ss_pred CceEEEeecccccchHHHHHhhccccccc-cccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence 45688999999999999999988764432 333444443332221 11224789999996432
Q ss_pred ccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 141 CVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 141 ~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
. |.+ . +.. +-.|+.++|+++-.. ...+-..-+..|... ..|+||.|||+|.+
T Consensus 554 t------nlR---s--rgs--slC~~aIlvvdImhG-lepqtiESi~lLR~r-----ktpFivALNKiDRL 605 (1064)
T KOG1144|consen 554 T------NLR---S--RGS--SLCDLAILVVDIMHG-LEPQTIESINLLRMR-----KTPFIVALNKIDRL 605 (1064)
T ss_pred h------hhh---h--ccc--cccceEEEEeehhcc-CCcchhHHHHHHHhc-----CCCeEEeehhhhhh
Confidence 1 111 1 111 234788888765422 112344455556554 57999999999976
No 370
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.84 E-value=0.0073 Score=57.50 Aligned_cols=54 Identities=26% Similarity=0.488 Sum_probs=35.3
Q ss_pred EEEEeCCCCcHHHHHHHHhCCCCccc-cCCCCccceEEEEEeeEcCeEEEEEECCCC
Q 005287 82 ILVLGKTGVGKSATINSIFDQTKTET-DAFQPATDCIREVKGSVNGIKVTFIDTPGF 137 (704)
Q Consensus 82 IlVVGkTGvGKSTLINsLlG~~~a~v-s~~~~tT~~~~~~~~~~~G~~v~LIDTPGl 137 (704)
|+|+|+||+||||+++.|........ .....+|+.... .+.+|..+.++|...+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~--~e~~g~~~~~v~~~~~ 56 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRP--GEVDGVDYHFVSKEEF 56 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCC--CccCCceeEEeCHHHH
Confidence 68999999999999999998632211 122234544432 2356777777775554
No 371
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.80 E-value=0.0082 Score=60.27 Aligned_cols=53 Identities=17% Similarity=0.199 Sum_probs=35.1
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEE
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFID 133 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LID 133 (704)
+.-|+|+|++|||||||++.|+.+.........-||+..... +.+|..+.+|+
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~g--E~~G~dY~fvs 56 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPG--DEEGKTYFFLT 56 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCC--CCCCceeEeCC
Confidence 466999999999999999999987533233344455544322 34555555553
No 372
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=95.69 E-value=0.011 Score=57.91 Aligned_cols=119 Identities=13% Similarity=0.083 Sum_probs=71.5
Q ss_pred CCCCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccce----EEEEEeeEcCeEEEEEECCCCCCcccchhhhhHH
Q 005287 75 DLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDC----IREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRK 150 (704)
Q Consensus 75 ~~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~----~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~ 150 (704)
...+.++|+++|.-=||||||+=...... +... .-+|-. .+....+-....+.||||+|-.....-+
T Consensus 9 g~s~~FK~VLLGEGCVGKtSLVLRy~Enk-Fn~k--HlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALG------ 79 (218)
T KOG0088|consen 9 GKSFKFKIVLLGEGCVGKTSLVLRYVENK-FNCK--HLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALG------ 79 (218)
T ss_pred CCceeeEEEEEcCCccchhHHHHHHHHhh-cchh--hHHHHHHHHhhcccccccceeeeeeeeccchHhhhccC------
Confidence 44578999999999999999986665332 1110 001110 1111112233468899999985432111
Q ss_pred HHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 151 IMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 151 il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
. |-..+.+.+|+|.++.....-..-+.....|...+|.. ..++||-||+|+-
T Consensus 80 ---P----IYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGne--i~l~IVGNKiDLE 131 (218)
T KOG0088|consen 80 ---P----IYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNE--IELLIVGNKIDLE 131 (218)
T ss_pred ---c----eEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCe--eEEEEecCcccHH
Confidence 0 11125688888877654321112346777888888876 5678999999975
No 373
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=95.66 E-value=0.074 Score=60.29 Aligned_cols=114 Identities=13% Similarity=0.119 Sum_probs=66.6
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCccc--------------cCCCCccceEEEEEeeE-----cCeEEEEEECCCCCCcc
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTET--------------DAFQPATDCIREVKGSV-----NGIKVTFIDTPGFLPSC 141 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~v--------------s~~~~tT~~~~~~~~~~-----~G~~v~LIDTPGl~d~~ 141 (704)
+..++-.---|||||...|+....... -.-.+.|-..+.+...+ ....+.+|||||--|..
T Consensus 11 NFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFs 90 (603)
T COG0481 11 NFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 90 (603)
T ss_pred ceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceE
Confidence 567888889999999999975322111 11235565555444433 23678999999998875
Q ss_pred cchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCCC
Q 005287 142 VRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 213 (704)
Q Consensus 142 ~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~p 213 (704)
.. + .+.+..| ...|+|+++..- -+.+++.-.--.+.. .--+|.|+||+|+...
T Consensus 91 YE-------V----SRSLAAC--EGalLvVDAsQG----veAQTlAN~YlAle~--~LeIiPViNKIDLP~A 143 (603)
T COG0481 91 YE-------V----SRSLAAC--EGALLVVDASQG----VEAQTLANVYLALEN--NLEIIPVLNKIDLPAA 143 (603)
T ss_pred EE-------e----hhhHhhC--CCcEEEEECccc----hHHHHHHHHHHHHHc--CcEEEEeeecccCCCC
Confidence 32 2 2333223 455555444322 123344443333322 3578999999998643
No 374
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.60 E-value=0.0089 Score=59.80 Aligned_cols=25 Identities=24% Similarity=0.614 Sum_probs=22.3
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~ 103 (704)
.-.|+|+|++|+|||||++.|.+..
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4568999999999999999999874
No 375
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.60 E-value=0.01 Score=55.20 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=22.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCc
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKT 105 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a 105 (704)
.++|+|++|+|||||++.|+|....
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~~~ 37 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLLPP 37 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSHE
T ss_pred EEEEEccCCCccccceeeecccccc
Confidence 6899999999999999999997643
No 376
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=95.60 E-value=0.041 Score=61.28 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=21.5
Q ss_pred CCCCeEEEEEeCCCCcHHHHHHHHhC
Q 005287 76 LDFSIRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 76 ~~~~lrIlVVGkTGvGKSTLINsLlG 101 (704)
.....+|+|+|+.+||||||.+-|++
T Consensus 70 ~~~~~~vmvvG~vDSGKSTLt~~LaN 95 (398)
T COG1341 70 AGKVGVVMVVGPVDSGKSTLTTYLAN 95 (398)
T ss_pred ccCCcEEEEECCcCcCHHHHHHHHHH
Confidence 45578999999999999998766654
No 377
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=95.57 E-value=0.044 Score=64.84 Aligned_cols=112 Identities=14% Similarity=0.202 Sum_probs=69.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCC---------------ccceEEEEEeeEcCeEEEEEECCCCCCcccch
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQP---------------ATDCIREVKGSVNGIKVTFIDTPGFLPSCVRN 144 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~---------------tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~ 144 (704)
-+|.++-.---|||||+.+|+.....+.+...+ .|.+...+.....+..+.+||+||-.|...
T Consensus 10 rn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~s-- 87 (887)
T KOG0467|consen 10 RNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSS-- 87 (887)
T ss_pred eEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhh--
Confidence 378899999999999999998776555443333 344444555566888999999999988632
Q ss_pred hhhhHHHHHHHHHHHhcCCCCEE-EEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 145 VKRNRKIMLSVKKFIRRSPPDIV-LYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 145 ~~~n~~il~~Ik~~ik~~~~dvV-L~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
+ +....+. .|.. ++|+-..+... +...+++ ...-. ....|+|+||+|.+
T Consensus 88 -----e----vssas~l--~d~alvlvdvvegv~~--qt~~vlr---q~~~~--~~~~~lvinkidrl 137 (887)
T KOG0467|consen 88 -----E----VSSASRL--SDGALVLVDVVEGVCS--QTYAVLR---QAWIE--GLKPILVINKIDRL 137 (887)
T ss_pred -----h----hhhhhhh--cCCcEEEEeeccccch--hHHHHHH---HHHHc--cCceEEEEehhhhH
Confidence 1 1111111 2544 44444444432 2233443 32111 25789999999955
No 378
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=95.56 E-value=0.011 Score=66.73 Aligned_cols=91 Identities=14% Similarity=0.228 Sum_probs=54.5
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCC------ccceEEEEEeeEcC--eEEEEE-----ECCCCCCcccch
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQP------ATDCIREVKGSVNG--IKVTFI-----DTPGFLPSCVRN 144 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~------tT~~~~~~~~~~~G--~~v~LI-----DTPGl~d~~~~~ 144 (704)
..=+++++|.+|+|||||+|.|.+.....+..+.. .+++.... ...+ .+-++| |+||.....
T Consensus 156 ~Gq~~~i~G~sG~GKStLl~~i~~~~~~~v~vi~~iGergrev~e~~~~--~l~~~l~~tvvV~atsddsp~~R~~~--- 230 (434)
T PRK08472 156 KGQKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVALIGERGREIPEFIEK--NLGGDLENTVIVVATSDDSPLMRKYG--- 230 (434)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhccCCCEEEEEeeCccchhHHHHHHH--HhcCcccceEEEEECCCCCHHHhhHH---
Confidence 34489999999999999999999754332211110 01111000 1112 145677 888886542
Q ss_pred hhhhHHHHHHHHHHHhcCCCCEEEEEEeccCcc
Q 005287 145 VKRNRKIMLSVKKFIRRSPPDIVLYFERLDLIS 177 (704)
Q Consensus 145 ~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t 177 (704)
-...-++.++++..+-|++|++++++++.
T Consensus 231 ----~~~a~~iAEyFrd~G~~Vll~~DslTr~A 259 (434)
T PRK08472 231 ----AFCAMSVAEYFKNQGLDVLFIMDSVTRFA 259 (434)
T ss_pred ----HHHHHHHHHHHHHcCCCEEEecccchHHH
Confidence 22234566777777889888887776554
No 379
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=95.51 E-value=0.036 Score=64.61 Aligned_cols=113 Identities=14% Similarity=0.188 Sum_probs=66.1
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCcccc-----CCCCcc-----------ceEEEEEe---eEc--CeEEEEEECCCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETD-----AFQPAT-----------DCIREVKG---SVN--GIKVTFIDTPGF 137 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs-----~~~~tT-----------~~~~~~~~---~~~--G~~v~LIDTPGl 137 (704)
-.++.++|.-+.|||+|+..|.++.....+ ...-++ -+..-... ... .+-+.++||||-
T Consensus 128 irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGH 207 (971)
T KOG0468|consen 128 IRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGH 207 (971)
T ss_pred EEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCc
Confidence 358999999999999999999876542221 001111 11111111 112 235789999999
Q ss_pred CCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEec-cCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 138 LPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERL-DLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 138 ~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~l-d~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
-+.. +++ ...++ -+|.+++|+++ ++... +-..+++...+. ..++++|+||.|.+
T Consensus 208 VnF~-------DE~----ta~l~--~sDgvVlvvDv~EGVml--ntEr~ikhaiq~-----~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 208 VNFS-------DET----TASLR--LSDGVVLVVDVAEGVML--NTERIIKHAIQN-----RLPIVVVINKVDRL 262 (971)
T ss_pred ccch-------HHH----HHHhh--hcceEEEEEEcccCcee--eHHHHHHHHHhc-----cCcEEEEEehhHHH
Confidence 7652 222 22332 45888777654 33332 333444444433 47999999999976
No 380
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=95.47 E-value=0.036 Score=58.52 Aligned_cols=61 Identities=20% Similarity=0.249 Sum_probs=43.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCC-Ccccc-CCCCccceEEEEEe---eEcCeEEEEEECCCCCCc
Q 005287 80 IRILVLGKTGVGKSATINSIFDQT-KTETD-AFQPATDCIREVKG---SVNGIKVTFIDTPGFLPS 140 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~-~a~vs-~~~~tT~~~~~~~~---~~~G~~v~LIDTPGl~d~ 140 (704)
.-|.|+|+..+|||.|+|.|++.. .+.++ ...++|.-+-.... ...+..+.++||.|+.+.
T Consensus 22 ~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~~ 87 (260)
T PF02263_consen 22 AVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGDV 87 (260)
T ss_dssp EEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTTT
T ss_pred EEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhcccc
Confidence 468899999999999999999853 34443 34567776443332 224578999999999883
No 381
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=95.47 E-value=0.0099 Score=60.01 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
.++|+|++|+|||||+|-|.|-..
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~ 50 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFET 50 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccC
Confidence 689999999999999999998653
No 382
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.45 E-value=0.094 Score=50.19 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=22.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
=.++|+|++|+|||||+|.|.|...
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~ 51 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCC
Confidence 4678999999999999999999753
No 383
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.37 E-value=0.011 Score=61.94 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=22.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCcc
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTE 106 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~ 106 (704)
-|+|+|+||+|||||+|.|.|-....
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~p~ 56 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEKPT 56 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 58999999999999999999976543
No 384
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=95.35 E-value=0.046 Score=54.11 Aligned_cols=116 Identities=15% Similarity=0.106 Sum_probs=60.4
Q ss_pred EEEEEeCCCCcHHHHHHHHh-----CCCCccc-cCCCCcc----------ceEEEEE-------------------eeEc
Q 005287 81 RILVLGKTGVGKSATINSIF-----DQTKTET-DAFQPAT----------DCIREVK-------------------GSVN 125 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLl-----G~~~a~v-s~~~~tT----------~~~~~~~-------------------~~~~ 125 (704)
-++|.|.-|+|||||||.++ |.+.+.. ..+.... ....... ....
T Consensus 2 v~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~~ 81 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLREY 81 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHhc
Confidence 36899999999999999999 3333322 3332110 0111111 0112
Q ss_pred --CeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCC-CcHHHHHHHHHHhcccccccEE
Q 005287 126 --GIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGF-SDFPLLKLMTEVFGTAIWFNTI 202 (704)
Q Consensus 126 --G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~-~D~~lLk~L~~~fG~~~~k~vI 202 (704)
....+||-|.|+.++..- ......+.. ....+.++.|++...+.... ....+..+|. .-=+
T Consensus 82 ~~~~d~IiIE~sG~a~p~~l-----~~~~~~~~~---~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~--------~ADv 145 (178)
T PF02492_consen 82 EERPDRIIIETSGLADPAPL-----ILQDPPLKE---DFRLDSIITVVDATNFDELENIPELLREQIA--------FADV 145 (178)
T ss_dssp HGC-SEEEEEEECSSGGGGH-----HHHSHHHHH---HESESEEEEEEEGTTHGGHTTHCHHHHHHHC--------T-SE
T ss_pred CCCcCEEEECCccccccchh-----hhccccccc---cccccceeEEeccccccccccchhhhhhcch--------hcCE
Confidence 457899999998776321 001112222 23678888887775442111 1112222222 2237
Q ss_pred EEEEccCCCC
Q 005287 203 LVMTHSSSTL 212 (704)
Q Consensus 203 VVLTK~D~l~ 212 (704)
+|+||+|+.+
T Consensus 146 IvlnK~D~~~ 155 (178)
T PF02492_consen 146 IVLNKIDLVS 155 (178)
T ss_dssp EEEE-GGGHH
T ss_pred EEEeccccCC
Confidence 8999999874
No 385
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=95.35 E-value=0.053 Score=57.04 Aligned_cols=26 Identities=23% Similarity=0.503 Sum_probs=22.5
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCC
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~ 103 (704)
...++++-|..|+||||++.+++.+-
T Consensus 51 pannvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 51 PANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred CCcceEEecCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998643
No 386
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.32 E-value=0.015 Score=52.95 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=19.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~ 102 (704)
.|+|.|+|||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999754
No 387
>PTZ00099 rab6; Provisional
Probab=95.31 E-value=0.056 Score=53.54 Aligned_cols=70 Identities=14% Similarity=0.150 Sum_probs=41.8
Q ss_pred CeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCc-HHHHHHHHHHhcccccccEEEE
Q 005287 126 GIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSD-FPLLKLMTEVFGTAIWFNTILV 204 (704)
Q Consensus 126 G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D-~~lLk~L~~~fG~~~~k~vIVV 204 (704)
..++.|+||||.... ... ...+++ .+|++|+|.+++.... ..+ ...+..+....+ ...|+|+|
T Consensus 28 ~v~l~iwDt~G~e~~--------~~~---~~~~~~--~ad~~ilv~D~t~~~s-f~~~~~w~~~i~~~~~--~~~piilV 91 (176)
T PTZ00099 28 PVRLQLWDTAGQERF--------RSL---IPSYIR--DSAAAIVVYDITNRQS-FENTTKWIQDILNERG--KDVIIALV 91 (176)
T ss_pred EEEEEEEECCChHHh--------hhc---cHHHhC--CCcEEEEEEECCCHHH-HHHHHHHHHHHHHhcC--CCCeEEEE
Confidence 367889999998432 111 123343 7899999988765321 111 123333333322 24688999
Q ss_pred EEccCCC
Q 005287 205 MTHSSST 211 (704)
Q Consensus 205 LTK~D~l 211 (704)
.||+|+.
T Consensus 92 gNK~DL~ 98 (176)
T PTZ00099 92 GNKTDLG 98 (176)
T ss_pred EECcccc
Confidence 9999986
No 388
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.29 E-value=0.033 Score=55.58 Aligned_cols=120 Identities=11% Similarity=0.014 Sum_probs=68.1
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCC----CccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQ----PATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIML 153 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~----~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~ 153 (704)
....|+|+|.-|+||+|++-++--.......... -+|.........+++.++.+||--|-. ..+.++.
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe--------~lrSlw~ 87 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQE--------SLRSLWK 87 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChH--------HHHHHHH
Confidence 3578999999999999999776332211111111 123333334445667889999977752 2234444
Q ss_pred HHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 154 SVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 154 ~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
..-. .+|+++|+++......-......++.+.+.- .--..|+++..||-|.-
T Consensus 88 ~yY~-----~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E-~leg~p~L~lankqd~q 139 (197)
T KOG0076|consen 88 KYYW-----LAHGIIYVIDATDRERFEESKTAFEKVVENE-KLEGAPVLVLANKQDLQ 139 (197)
T ss_pred HHHH-----HhceeEEeecCCCHHHHHHHHHHHHHHHHHH-HhcCCchhhhcchhhhh
Confidence 3322 4599999976654321112222333332210 11247889999999865
No 389
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=95.21 E-value=0.13 Score=56.55 Aligned_cols=62 Identities=13% Similarity=0.197 Sum_probs=39.0
Q ss_pred EEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccC
Q 005287 130 TFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSS 209 (704)
Q Consensus 130 ~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D 209 (704)
.+|||+|+.... -...+.+. ++...+++|+.+. +..+...+.+.++..-|.+ ++-+.|.+
T Consensus 215 ~iInT~g~i~~e-----gy~~llha----i~~f~v~vviVLg----------~ErLy~~lkk~~~~~~~v~-vv~lpKsg 274 (415)
T KOG2749|consen 215 CIINTCGWIEGE-----GYAALLHA----IKAFEVDVVIVLG----------QERLYSSLKKDLPPKKNVR-VVKLPKSG 274 (415)
T ss_pred eEEeccceeccc-----cHHHHHHH----HHHcCccEEEEec----------cHHHHHHHHhhccccccce-EEEecCCC
Confidence 689999998741 12334443 3334788888772 2267888888887664433 44567776
Q ss_pred CC
Q 005287 210 ST 211 (704)
Q Consensus 210 ~l 211 (704)
..
T Consensus 275 Gv 276 (415)
T KOG2749|consen 275 GV 276 (415)
T ss_pred Ce
Confidence 55
No 390
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.20 E-value=0.013 Score=60.75 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=22.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCc
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKT 105 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a 105 (704)
-|+|+|++|+|||||+|.|-|-...
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~p 57 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDKP 57 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCC
Confidence 5899999999999999999886644
No 391
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.20 E-value=0.14 Score=43.44 Aligned_cols=46 Identities=28% Similarity=0.348 Sum_probs=30.2
Q ss_pred EEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCc
Q 005287 82 ILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPS 140 (704)
Q Consensus 82 IlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~ 140 (704)
|++.|..|+||||+.+.|...-.. ... ++. ..+ .+.++|+|+..+.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~--~g~-----~v~----~~~--d~iivD~~~~~~~ 47 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK--RGK-----RVL----LID--DYVLIDTPPGLGL 47 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH--CCC-----eEE----EEC--CEEEEeCCCCccc
Confidence 678899999999999888643211 000 000 001 7899999998754
No 392
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.15 E-value=0.078 Score=47.95 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=21.9
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~ 103 (704)
...++|+|++|+|||++++.+...-
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998754
No 393
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.13 E-value=0.12 Score=50.76 Aligned_cols=25 Identities=32% Similarity=0.385 Sum_probs=22.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
=.++|+|++|+|||||++.|.|...
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~ 51 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLLK 51 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3689999999999999999999753
No 394
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.01 E-value=0.15 Score=49.33 Aligned_cols=115 Identities=19% Similarity=0.189 Sum_probs=63.6
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEE--EEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIR--EVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~--~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
-++-+++|.-|||||.|+..+.......-- |.|-.+. ....++.| .++.++||+|-... ..+.
T Consensus 11 ifkyiiigdmgvgkscllhqftekkfmadc---phtigvefgtriievsgqkiklqiwdtagqerf--------ravt-- 77 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKFMADC---PHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF--------RAVT-- 77 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHHhhcC---CcccceecceeEEEecCcEEEEEEeecccHHHH--------HHHH--
Confidence 368899999999999999988765432211 1111111 11122333 46789999997321 2222
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccc-ccccEEEEEEccCCCC
Q 005287 155 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA-IWFNTILVMTHSSSTL 212 (704)
Q Consensus 155 Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~-~~k~vIVVLTK~D~l~ 212 (704)
+.+.+ ++-..|+|-++.+.+. --.+-.++.+..... ...-++++-||+|+-.
T Consensus 78 -rsyyr--gaagalmvyditrrst---ynhlsswl~dar~ltnpnt~i~lignkadle~ 130 (215)
T KOG0097|consen 78 -RSYYR--GAAGALMVYDITRRST---YNHLSSWLTDARNLTNPNTVIFLIGNKADLES 130 (215)
T ss_pred -HHHhc--cccceeEEEEehhhhh---hhhHHHHHhhhhccCCCceEEEEecchhhhhh
Confidence 22222 5566777766665432 223455666553322 1223445568999764
No 395
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=94.99 E-value=0.17 Score=49.50 Aligned_cols=66 Identities=12% Similarity=0.121 Sum_probs=39.0
Q ss_pred cCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEE
Q 005287 125 NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILV 204 (704)
Q Consensus 125 ~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVV 204 (704)
....++|||||+.... ... ..+. .+|.+++++..+..... .-..+++.+.+. ..+..+|
T Consensus 91 ~~~d~viiDtpp~~~~---------~~~----~~l~--~aD~vliv~~~~~~~~~-~~~~~~~~l~~~-----~~~~~vV 149 (179)
T cd03110 91 EGAELIIIDGPPGIGC---------PVI----ASLT--GADAALLVTEPTPSGLH-DLERAVELVRHF-----GIPVGVV 149 (179)
T ss_pred cCCCEEEEECcCCCcH---------HHH----HHHH--cCCEEEEEecCCcccHH-HHHHHHHHHHHc-----CCCEEEE
Confidence 4568999999966421 111 2222 56999999877654321 122344444332 3567899
Q ss_pred EEccCCC
Q 005287 205 MTHSSST 211 (704)
Q Consensus 205 LTK~D~l 211 (704)
+|++|.-
T Consensus 150 ~N~~~~~ 156 (179)
T cd03110 150 INKYDLN 156 (179)
T ss_pred EeCCCCC
Confidence 9999843
No 396
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=94.96 E-value=0.014 Score=60.01 Aligned_cols=76 Identities=12% Similarity=0.182 Sum_probs=41.5
Q ss_pred EEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEE-EEEEeccCccCCCCcH---HHHHHHHHHhcccccccEEE
Q 005287 128 KVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIV-LYFERLDLISMGFSDF---PLLKLMTEVFGTAIWFNTIL 203 (704)
Q Consensus 128 ~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvV-L~Vi~ld~~t~~~~D~---~lLk~L~~~fG~~~~k~vIV 203 (704)
.+.++|.||-.+-- ....++..+.++++.-.+.++ +|++...-... ..+ ..+..+.... ....|.|=
T Consensus 99 dylifDcPGQIELy-----tH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD--~~KfiSG~lsAlsAMi--~lE~P~IN 169 (273)
T KOG1534|consen 99 DYLIFDCPGQIELY-----THLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVD--STKFISGCLSALSAMI--SLEVPHIN 169 (273)
T ss_pred CEEEEeCCCeeEEe-----ecChhHHHHHHHHhcccCceeEEEEeccchhhh--HHHHHHHHHHHHHHHH--HhcCcchh
Confidence 68999999987652 223455666666655444543 56633211110 111 1222222221 12479999
Q ss_pred EEEccCCCC
Q 005287 204 VMTHSSSTL 212 (704)
Q Consensus 204 VLTK~D~l~ 212 (704)
|++|.|++.
T Consensus 170 vlsKMDLlk 178 (273)
T KOG1534|consen 170 VLSKMDLLK 178 (273)
T ss_pred hhhHHHHhh
Confidence 999999984
No 397
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=94.87 E-value=0.082 Score=53.24 Aligned_cols=22 Identities=32% Similarity=0.221 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHhC
Q 005287 80 IRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG 101 (704)
=+++|+|+.|+|||||+.+|.+
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 4799999999999999999984
No 398
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=94.85 E-value=0.017 Score=68.51 Aligned_cols=126 Identities=19% Similarity=0.168 Sum_probs=71.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEE--------------------------------------
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVK-------------------------------------- 121 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~-------------------------------------- 121 (704)
..|+|||..++||||.++++.|......+. .-+|+.+....
T Consensus 30 P~I~vvG~QSsGKSSvLE~lvG~~flpRg~-givTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~et~ 108 (657)
T KOG0446|consen 30 PQIVVVGGQSSGKSSVLESLVGFVFLPRGV-GIVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIRSETD 108 (657)
T ss_pred CceEEecCCCCcchhHHHHhhccccccccc-cceecccceeecccccCCcccchhccccccccccCCHHHHHHHHHhhHH
Confidence 589999999999999999999965433221 12222111000
Q ss_pred ---------------e---eEcCeEEEEEECCCCCCcccchh--hhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCC
Q 005287 122 ---------------G---SVNGIKVTFIDTPGFLPSCVRNV--KRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFS 181 (704)
Q Consensus 122 ---------------~---~~~G~~v~LIDTPGl~d~~~~~~--~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~ 181 (704)
. ...-.++++||.||+-.....++ .....+...+..++. +++++++.+...... ..
T Consensus 109 ~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~--~~~~iILav~~an~d--~a 184 (657)
T KOG0446|consen 109 RITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIE--KPNRIILAVTPANSD--IA 184 (657)
T ss_pred HhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhcc--ccchhhhhccchhhh--hh
Confidence 0 00112578999999987654432 122344445555654 556665554322111 11
Q ss_pred cHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 182 DFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 182 D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
....++...+. + .....++-|+||+|+++
T Consensus 185 ts~alkiarev-D-p~g~RTigvitK~Dlmd 213 (657)
T KOG0446|consen 185 TSPALVVAREV-D-PGGSRTLEVITKFDFMD 213 (657)
T ss_pred cCHHHHHHHhh-C-CCccchhHHhhhHHhhh
Confidence 11244444443 1 12468999999999984
No 399
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.80 E-value=0.021 Score=56.83 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=22.3
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~ 103 (704)
.-.|+|+|++|+|||||+++|++.-
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3579999999999999999999864
No 400
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=94.64 E-value=0.29 Score=44.50 Aligned_cols=96 Identities=20% Similarity=0.217 Sum_probs=50.6
Q ss_pred EEEE-eCCCCcHHHHHHHHhC-------CCCcccc-CCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHH
Q 005287 82 ILVL-GKTGVGKSATINSIFD-------QTKTETD-AFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIM 152 (704)
Q Consensus 82 IlVV-GkTGvGKSTLINsLlG-------~~~a~vs-~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il 152 (704)
|+++ ++.|+||||+.-.|.. .+....+ +....+ .++|||||+..... ..
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~~-------------D~IIiDtpp~~~~~---------~~ 59 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFGD-------------DYVVVDLGRSLDEV---------SL 59 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCCC-------------CEEEEeCCCCcCHH---------HH
Confidence 3444 4899999997766632 2222222 111111 78999999975321 11
Q ss_pred HHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEc
Q 005287 153 LSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTH 207 (704)
Q Consensus 153 ~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK 207 (704)
..+. .+|.++++...+..... .-..+++.+.+. +.....++.+|+|+
T Consensus 60 ----~~l~--~aD~vlvvv~~~~~s~~-~~~~~~~~l~~~-~~~~~~~~~lVvNr 106 (106)
T cd03111 60 ----AALD--QADRVFLVTQQDLPSIR-NAKRLLELLRVL-DYSLPAKIELVLNR 106 (106)
T ss_pred ----HHHH--HcCeEEEEecCChHHHH-HHHHHHHHHHHc-CCCCcCceEEEecC
Confidence 1222 45889988766654321 122344444433 21112466677775
No 401
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.63 E-value=0.026 Score=56.81 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
.++|+|++|+|||||++.|+|...
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~~ 52 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 689999999999999999999753
No 402
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.62 E-value=0.028 Score=47.02 Aligned_cols=19 Identities=37% Similarity=0.644 Sum_probs=17.6
Q ss_pred EEEEEeCCCCcHHHHHHHH
Q 005287 81 RILVLGKTGVGKSATINSI 99 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsL 99 (704)
..+|.|++|+||||++.+|
T Consensus 25 ~tli~G~nGsGKSTllDAi 43 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAI 43 (62)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999887
No 403
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.61 E-value=0.27 Score=48.93 Aligned_cols=24 Identities=29% Similarity=0.699 Sum_probs=21.3
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhC
Q 005287 78 FSIRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG 101 (704)
..++|.|.|+|||||||++-.|.+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHH
Confidence 468999999999999999988864
No 404
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.60 E-value=0.026 Score=57.88 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=21.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
.++|+|++|+|||||++.|+|...
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~ 51 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLLR 51 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999999753
No 405
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=94.57 E-value=0.32 Score=52.50 Aligned_cols=118 Identities=10% Similarity=0.045 Sum_probs=71.0
Q ss_pred CCCCeEEEEEeCCCCcHHHHHHHHhCCC------Cc---------cccCCCCccceEEEEEeeEcCeEEEEEECCCCCCc
Q 005287 76 LDFSIRILVLGKTGVGKSATINSIFDQT------KT---------ETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPS 140 (704)
Q Consensus 76 ~~~~lrIlVVGkTGvGKSTLINsLlG~~------~a---------~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~ 140 (704)
.....||..+|.-+-|||||..+|...- .+ ..-...+.|-....+..+...+.+-.+|.||-.|.
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY 88 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence 3456899999999999999999995421 11 11112345666666777778899999999998653
Q ss_pred ccchhhhhHHHHHHHHHHHhcCCCCEEEEEEecc-CccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 141 CVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLD-LISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 141 ~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld-~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
+.+.|..+. +.|..++|+.++ ..-. +-..-+ .|.+..| -..+++.+||+|...
T Consensus 89 ----------vKNMItgAa---qmDgAILVVsA~dGpmP--qTrEHi-LlarqvG---vp~ivvflnK~Dmvd 142 (394)
T COG0050 89 ----------VKNMITGAA---QMDGAILVVAATDGPMP--QTREHI-LLARQVG---VPYIVVFLNKVDMVD 142 (394)
T ss_pred ----------HHHHhhhHH---hcCccEEEEEcCCCCCC--cchhhh-hhhhhcC---CcEEEEEEecccccC
Confidence 111222222 447666666544 3321 111111 2233333 236777889999984
No 406
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=94.52 E-value=0.22 Score=54.37 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=18.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~ 102 (704)
-.+|.|.-|+|||||+|.|+..
T Consensus 6 v~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 3568899999999999999854
No 407
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.50 E-value=0.028 Score=56.17 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=22.9
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
.=.++|+|++|+|||||++.|.|...
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCC
Confidence 44789999999999999999999753
No 408
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.47 E-value=0.031 Score=52.19 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.5
Q ss_pred EEEEeCCCCcHHHHHHHHhCCC
Q 005287 82 ILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 82 IlVVGkTGvGKSTLINsLlG~~ 103 (704)
|+++|+||+||||++..|....
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHC
Confidence 7899999999999999998443
No 409
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=94.47 E-value=0.028 Score=58.65 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=21.3
Q ss_pred EEEEEeCCCCcHHHHHHHH------hCCCCccc
Q 005287 81 RILVLGKTGVGKSATINSI------FDQTKTET 107 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsL------lG~~~a~v 107 (704)
--+|+|+||+||||..|.+ +|+....+
T Consensus 4 gqvVIGPPgSGKsTYc~g~~~fls~~gr~~~vV 36 (290)
T KOG1533|consen 4 GQVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVV 36 (290)
T ss_pred ceEEEcCCCCCccchhhhHHHHHHHhCCceEEE
Confidence 3589999999999999877 46655555
No 410
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.46 E-value=0.03 Score=56.86 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~ 103 (704)
=.++|+|++|+|||||++.|+|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999974
No 411
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=94.40 E-value=0.031 Score=56.32 Aligned_cols=24 Identities=17% Similarity=0.487 Sum_probs=21.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
.++|+|++|+|||||++.|+|...
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGALT 53 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999999753
No 412
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.40 E-value=0.035 Score=49.56 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~ 103 (704)
-.++|+|++|+||||++..|+..-
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc
Confidence 478999999999999999998754
No 413
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.39 E-value=0.032 Score=56.46 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=21.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
.++|+|++|+|||||++.|+|...
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCcC
Confidence 689999999999999999999753
No 414
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.39 E-value=0.031 Score=56.48 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=21.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~ 103 (704)
=.++|+|++|+|||||++.|+|..
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999965
No 415
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=94.34 E-value=0.033 Score=61.77 Aligned_cols=114 Identities=15% Similarity=0.113 Sum_probs=72.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccc-----c------------CCCCccceEEEEEeeEcCeEEEEEECCCCCCccc
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTET-----D------------AFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCV 142 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~v-----s------------~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~ 142 (704)
-+|.|+....+||+|+-..|+--..++. + .-.+.|.....+.+.|.|.++.+|||||-.+...
T Consensus 38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~l 117 (753)
T KOG0464|consen 38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRL 117 (753)
T ss_pred hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEE
Confidence 3789999999999999988853222221 1 1123455666777899999999999999988753
Q ss_pred chhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 143 RNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 143 ~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
. +.+|++. .|.++.|++.++.-. .+...+.++- .. ...|.+..+||.|.+.
T Consensus 118 e-----------verclrv--ldgavav~dasagve-~qtltvwrqa-dk----~~ip~~~finkmdk~~ 168 (753)
T KOG0464|consen 118 E-----------VERCLRV--LDGAVAVFDASAGVE-AQTLTVWRQA-DK----FKIPAHCFINKMDKLA 168 (753)
T ss_pred E-----------HHHHHHH--hcCeEEEEeccCCcc-cceeeeehhc-cc----cCCchhhhhhhhhhhh
Confidence 2 3456542 366777765543221 1222222222 22 2468888899999873
No 416
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=94.34 E-value=0.033 Score=55.71 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=21.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~ 103 (704)
.++|+|++|+|||||++.|+|..
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999965
No 417
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.33 E-value=0.03 Score=56.39 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=22.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
.++|+|++|+|||||++.|.|...
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~ 50 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTP 50 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCC
Confidence 789999999999999999999653
No 418
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.32 E-value=0.034 Score=55.16 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
.++|+|++|+|||||++.|+|...
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999999653
No 419
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=94.29 E-value=0.09 Score=57.13 Aligned_cols=120 Identities=17% Similarity=0.121 Sum_probs=66.6
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccC-----------CCCc-cceEEE------EE----eeEc------CeE
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDA-----------FQPA-TDCIRE------VK----GSVN------GIK 128 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~-----------~~~t-T~~~~~------~~----~~~~------G~~ 128 (704)
...++|.++|.---|||||..+|.|--....+. +..+ -.+|.. +. ...+ -+.
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 356899999999999999999998842211110 0000 001110 00 0111 257
Q ss_pred EEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEcc
Q 005287 129 VTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHS 208 (704)
Q Consensus 129 v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~ 208 (704)
+-|+|.||-. -.+..+-.-. .--|..|+|+..+..-...+..+-+-.| +..| -+++|+|-||.
T Consensus 88 VSfVDaPGHe-----------~LMATMLsGA--AlMDgAlLvIaANEpcPQPQT~EHl~Al-eIig---ik~iiIvQNKI 150 (415)
T COG5257 88 VSFVDAPGHE-----------TLMATMLSGA--ALMDGALLVIAANEPCPQPQTREHLMAL-EIIG---IKNIIIVQNKI 150 (415)
T ss_pred EEEeeCCchH-----------HHHHHHhcch--hhhcceEEEEecCCCCCCCchHHHHHHH-hhhc---cceEEEEeccc
Confidence 8899999973 2222221100 0127788888776544333333333222 2222 37999999999
Q ss_pred CCCCC
Q 005287 209 SSTLP 213 (704)
Q Consensus 209 D~l~p 213 (704)
|+...
T Consensus 151 DlV~~ 155 (415)
T COG5257 151 DLVSR 155 (415)
T ss_pred ceecH
Confidence 99853
No 420
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.29 E-value=0.035 Score=55.20 Aligned_cols=23 Identities=22% Similarity=0.499 Sum_probs=20.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~ 103 (704)
.|+|+|++|+||||+++.|.+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68999999999999999998764
No 421
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.27 E-value=0.035 Score=56.41 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=21.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
.++|+|++|+|||||++.|+|...
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLER 55 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999999753
No 422
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.26 E-value=0.034 Score=55.51 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHhC
Q 005287 80 IRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG 101 (704)
-.++|+|++|+|||||+|.|++
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 4789999999999999999985
No 423
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=94.25 E-value=0.034 Score=56.68 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=21.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~ 103 (704)
=.++|+|++|+|||||++.|+|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 27 EITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 368999999999999999999975
No 424
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.25 E-value=0.035 Score=56.24 Aligned_cols=25 Identities=24% Similarity=0.494 Sum_probs=22.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
=.++|+|++|+|||||++.|.|...
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (222)
T cd03224 27 EIVALLGRNGAGKTTLLKTIMGLLP 51 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3689999999999999999999753
No 425
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=94.23 E-value=0.036 Score=55.81 Aligned_cols=23 Identities=26% Similarity=0.634 Sum_probs=21.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~ 103 (704)
.++|+|++|+|||||++.|+|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999975
No 426
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.22 E-value=0.036 Score=55.66 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=22.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
=.++|+|++|+|||||++.|+|...
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGLIK 51 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3789999999999999999999753
No 427
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.21 E-value=0.037 Score=56.09 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=21.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
.++|+|++|+|||||++.|+|...
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGELR 53 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999999753
No 428
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=94.20 E-value=0.068 Score=59.18 Aligned_cols=123 Identities=16% Similarity=0.067 Sum_probs=67.7
Q ss_pred CCCCCCeEEEEEeCCCCcHHHHHHHHh-CCCC-----cc-------ccCCCCccceEEEEEee-----------------
Q 005287 74 PDLDFSIRILVLGKTGVGKSATINSIF-DQTK-----TE-------TDAFQPATDCIREVKGS----------------- 123 (704)
Q Consensus 74 ~~~~~~lrIlVVGkTGvGKSTLINsLl-G~~~-----a~-------vs~~~~tT~~~~~~~~~----------------- 123 (704)
+.....+.+.+.|.-+.|||||.-+|. |+.- .. +--..+-|.+.....+-
T Consensus 112 ~~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE 191 (527)
T COG5258 112 EEAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAE 191 (527)
T ss_pred cCCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHH
Confidence 345667899999999999999998884 2210 00 00001222222211111
Q ss_pred ------EcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccc
Q 005287 124 ------VNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAI 197 (704)
Q Consensus 124 ------~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~ 197 (704)
..++-+.||||-|-. .+++...+-+--.++|-.++++.+|.--.. .-++-|..+. .+
T Consensus 192 ~~~vv~~aDklVsfVDtvGHE-----------pwLrTtirGL~gqk~dYglLvVaAddG~~~-~tkEHLgi~~-----a~ 254 (527)
T COG5258 192 KAAVVKRADKLVSFVDTVGHE-----------PWLRTTIRGLLGQKVDYGLLVVAADDGVTK-MTKEHLGIAL-----AM 254 (527)
T ss_pred HhHhhhhcccEEEEEecCCcc-----------HHHHHHHHHHhccccceEEEEEEccCCcch-hhhHhhhhhh-----hh
Confidence 122446788988873 233332223333578999999877642210 1111222221 12
Q ss_pred cccEEEEEEccCCCCC
Q 005287 198 WFNTILVMTHSSSTLP 213 (704)
Q Consensus 198 ~k~vIVVLTK~D~l~p 213 (704)
..|+|+|+||+|..+.
T Consensus 255 ~lPviVvvTK~D~~~d 270 (527)
T COG5258 255 ELPVIVVVTKIDMVPD 270 (527)
T ss_pred cCCEEEEEEecccCcH
Confidence 4799999999999853
No 429
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.19 E-value=0.037 Score=55.84 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=21.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
.++|+|++|+|||||++.|+|...
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLER 51 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999999753
No 430
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=94.19 E-value=0.034 Score=61.01 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=22.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCc
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKT 105 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a 105 (704)
-++++|++|+|||||++.|+|-+..
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe~~ 55 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLEEP 55 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4789999999999999999997643
No 431
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.18 E-value=0.037 Score=56.63 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=22.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
=.++|+|++|+|||||++.|+|...
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 32 EIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3789999999999999999999754
No 432
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=94.14 E-value=0.039 Score=55.96 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=22.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
.++|+|++|+|||||++.|+|...
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~~ 56 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLDN 56 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999999753
No 433
>PRK07261 topology modulation protein; Provisional
Probab=94.14 E-value=0.038 Score=54.53 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=19.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~ 102 (704)
+|+|+|.||+|||||...|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998643
No 434
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=94.14 E-value=0.038 Score=56.86 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=21.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~ 103 (704)
.++|+|++|+|||||++.|+|..
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999999965
No 435
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.11 E-value=0.041 Score=53.64 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=22.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
=.++|+|++|+|||||++.|+|...
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~ 51 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYK 51 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3789999999999999999999753
No 436
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.10 E-value=0.04 Score=55.47 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=22.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
=.++|+|++|+|||||++.|+|...
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (210)
T cd03269 27 EIFGLLGPNGAGKTTTIRMILGIIL 51 (210)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3689999999999999999999753
No 437
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.09 E-value=0.034 Score=54.45 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=20.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~ 102 (704)
.|+|+|++||||||+++.|.+.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999999765
No 438
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=94.08 E-value=0.04 Score=55.41 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=21.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
.++|+|++|+|||||++.|+|...
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLEE 51 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999999753
No 439
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.08 E-value=0.2 Score=51.33 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHhC
Q 005287 80 IRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG 101 (704)
-.++|.|+.|+|||||++++..
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 5689999999999999999863
No 440
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.07 E-value=0.034 Score=56.13 Aligned_cols=23 Identities=43% Similarity=0.663 Sum_probs=20.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~ 103 (704)
-|+|+|+||+||||++++|++.-
T Consensus 3 lilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998753
No 441
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=94.06 E-value=0.041 Score=56.22 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=21.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
.++|+|++|+|||||++.|+|...
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLVK 51 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999999753
No 442
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.03 E-value=0.13 Score=52.27 Aligned_cols=22 Identities=32% Similarity=0.351 Sum_probs=19.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~ 102 (704)
-++|+|++|+|||||+++|.+.
T Consensus 27 ~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 27 GILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred EEEEECCCCCChHHHHHHHHHH
Confidence 4689999999999999999763
No 443
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.03 E-value=0.04 Score=55.60 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=22.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
=.++|+|++|+|||||++.|+|...
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~G~~~ 50 (213)
T cd03235 26 EFLAIVGPNGAGKSTLLKAILGLLK 50 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCC
Confidence 3689999999999999999999753
No 444
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=93.97 E-value=0.043 Score=55.93 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=22.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
=.++|+|++|+|||||++.|+|...
T Consensus 14 e~~~l~G~NGsGKSTLlk~i~Gl~~ 38 (213)
T PRK15177 14 EHIGILAAPGSGKTTLTRLLCGLDA 38 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcc
Confidence 3688999999999999999999753
No 445
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.97 E-value=0.043 Score=56.31 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=21.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~ 103 (704)
.++|+|++|+|||||++.|+|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999999965
No 446
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=93.96 E-value=0.043 Score=56.29 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=21.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~ 103 (704)
.++|+|++|+|||||++.|+|..
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999975
No 447
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=93.96 E-value=0.043 Score=55.73 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=22.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
.++|+|++|+|||||++.|+|...
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~~ 56 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGLLK 56 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 789999999999999999999753
No 448
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=93.95 E-value=0.044 Score=55.42 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=21.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~ 103 (704)
.++|+|++|+|||||++.|+|..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999999965
No 449
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=93.95 E-value=0.045 Score=55.05 Aligned_cols=25 Identities=32% Similarity=0.402 Sum_probs=22.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
=.++|+|++|+|||||++.|+|...
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (208)
T cd03268 27 EIYGFLGPNGAGKTTTMKIILGLIK 51 (208)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcC
Confidence 3689999999999999999999753
No 450
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=93.93 E-value=0.044 Score=56.32 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=21.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~ 103 (704)
=.++|+|++|+|||||++.|+|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~ 50 (243)
T TIGR01978 27 EIHAIMGPNGSGKSTLSKTIAGHP 50 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999973
No 451
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=93.92 E-value=0.043 Score=56.97 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=21.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~ 103 (704)
.++|+|++|+|||||++.|+|..
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 34 VTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 68999999999999999999863
No 452
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=93.91 E-value=0.046 Score=54.65 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=21.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~ 103 (704)
=.++|+|++|+|||||++.|+|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 27 EALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999975
No 453
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=93.90 E-value=0.047 Score=49.54 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=19.0
Q ss_pred EEEEeCCCCcHHHHHHHHhCC
Q 005287 82 ILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 82 IlVVGkTGvGKSTLINsLlG~ 102 (704)
|+|.|.+||||||+.+.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999754
No 454
>PLN02796 D-glycerate 3-kinase
Probab=93.90 E-value=0.083 Score=58.21 Aligned_cols=27 Identities=15% Similarity=0.110 Sum_probs=23.7
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCC
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~ 103 (704)
..++.|.|+|.+|+|||||++.|.+.-
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL 124 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLF 124 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHh
Confidence 357899999999999999999998653
No 455
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=93.89 E-value=0.046 Score=55.05 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=21.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
.++|+|++|+|||||++.|+|...
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLEE 51 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999999753
No 456
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.88 E-value=0.046 Score=55.74 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=21.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
.++|+|++|+|||||++.|+|...
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~~ 54 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLMRFYD 54 (229)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcC
Confidence 589999999999999999999753
No 457
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=93.87 E-value=0.044 Score=60.37 Aligned_cols=25 Identities=24% Similarity=0.515 Sum_probs=22.7
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~ 103 (704)
..+|+|.|+||+|||||+|+|++.-
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i 186 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAI 186 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHccc
Confidence 5789999999999999999999753
No 458
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=93.85 E-value=0.046 Score=57.25 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=22.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
=.++|+|++|+|||||++.|+|...
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (255)
T PRK11248 28 ELLVVLGPSGCGKTTLLNLIAGFVP 52 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3689999999999999999999753
No 459
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.84 E-value=0.048 Score=55.07 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=22.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
=.++|+|++|+|||||++.|+|...
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~~ 53 (207)
T PRK13539 29 EALVLTGPNGSGKTTLLRLIAGLLP 53 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3689999999999999999999754
No 460
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.83 E-value=0.048 Score=54.47 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=22.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
=.++|+|++|+|||||++.|+|...
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~~ 51 (195)
T PRK13541 27 AITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3789999999999999999999753
No 461
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.83 E-value=0.049 Score=53.66 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=22.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
=.++|+|++|+|||||++.|+|...
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3688999999999999999999753
No 462
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=93.82 E-value=0.046 Score=55.98 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=21.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~ 103 (704)
.++|+|++|+|||||++.|+|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 68999999999999999999965
No 463
>PRK10908 cell division protein FtsE; Provisional
Probab=93.81 E-value=0.048 Score=55.43 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=22.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
=.++|+|++|+|||||++.|+|...
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~~ 53 (222)
T PRK10908 29 EMAFLTGHSGAGKSTLLKLICGIER 53 (222)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3689999999999999999999753
No 464
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=93.80 E-value=0.048 Score=56.40 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=21.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~ 103 (704)
.++|+|++|+|||||++.|+|..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 31 VVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999975
No 465
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.79 E-value=0.047 Score=56.53 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=21.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~ 103 (704)
=.++|+|++|+|||||++.|+|..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (246)
T PRK14269 29 KITALIGASGCGKSTFLRCFNRMN 52 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 368999999999999999999964
No 466
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=93.79 E-value=0.048 Score=55.94 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=22.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
.++|+|++|+|||||++.|+|...
T Consensus 14 ~~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 14 VLALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 689999999999999999999754
No 467
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=93.78 E-value=0.049 Score=55.55 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=22.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
.++|+|++|+|||||++.|+|...
T Consensus 38 ~~~i~G~nGsGKSTLl~~i~Gl~~ 61 (228)
T PRK10584 38 TIALIGESGSGKSTLLAILAGLDD 61 (228)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 789999999999999999999753
No 468
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=93.77 E-value=0.049 Score=56.13 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=22.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
.++|+|++|+|||||++.|+|...
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~~ 53 (242)
T PRK11124 30 TLVLLGPSGAGKSSLLRVLNLLEM 53 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999999753
No 469
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.76 E-value=0.051 Score=53.77 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=22.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCc
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKT 105 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a 105 (704)
.++|+|++|+|||||++.|.|....
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFGLRPP 52 (182)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999997643
No 470
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=93.76 E-value=0.051 Score=54.63 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=22.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
=.++|+|++|+|||||++.|.|...
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~~ 51 (201)
T cd03231 27 EALQVTGPNGSGKTTLLRILAGLSP 51 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3789999999999999999999753
No 471
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.76 E-value=0.048 Score=56.48 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=21.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~ 103 (704)
.++|+|++|+|||||++.|+|..
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 31 ITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68999999999999999999975
No 472
>PRK05480 uridine/cytidine kinase; Provisional
Probab=93.76 E-value=0.05 Score=54.87 Aligned_cols=26 Identities=27% Similarity=0.517 Sum_probs=23.2
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCC
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
..+..|+|.|++|+|||||.+.|.+.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999874
No 473
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.75 E-value=0.051 Score=54.93 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=22.2
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCC
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
....|+|+|++|+|||||.+.|.+.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999875
No 474
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.75 E-value=0.051 Score=54.51 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=22.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
=.++|+|++|+|||||++.|+|...
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~G~~~ 52 (200)
T PRK13540 28 GLLHLKGSNGAGKTTLLKLIAGLLN 52 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3789999999999999999999753
No 475
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.75 E-value=0.051 Score=55.19 Aligned_cols=24 Identities=25% Similarity=0.464 Sum_probs=22.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
.++|+|++|+|||||++.|+|...
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~G~~~ 62 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAGLLH 62 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999999753
No 476
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.74 E-value=0.05 Score=56.05 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=21.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
.++|+|++|+|||||++.|+|...
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (239)
T cd03296 30 LVALLGPSGSGKTTLLRLIAGLER 53 (239)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999999753
No 477
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=93.73 E-value=0.051 Score=55.87 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=22.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
=.++|+|++|+|||||++.|+|...
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~ 52 (236)
T TIGR03864 28 EFVALLGPNGAGKSTLFSLLTRLYV 52 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcC
Confidence 3689999999999999999999753
No 478
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=93.73 E-value=0.049 Score=56.83 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=21.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~ 103 (704)
=.++|+|++|+|||||++.|+|..
T Consensus 31 e~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 31 SVTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 368999999999999999999964
No 479
>PRK08118 topology modulation protein; Reviewed
Probab=93.69 E-value=0.052 Score=53.47 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=20.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~ 103 (704)
+|+|+|.+|+||||+...|...-
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999987543
No 480
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=93.69 E-value=0.13 Score=56.70 Aligned_cols=119 Identities=23% Similarity=0.276 Sum_probs=66.9
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCC------Cccc------cCCCC-ccceEE-EEEe--------------------eE
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQT------KTET------DAFQP-ATDCIR-EVKG--------------------SV 124 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~------~a~v------s~~~~-tT~~~~-~~~~--------------------~~ 124 (704)
.+|++|+|--.+|||||+--|...+ ++.. ..+.+ .|..+. ++.+ +.
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 5799999999999999998885322 1111 11111 121111 0000 01
Q ss_pred cCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccC-ccCCCCcHHHHHHHHHHhcccccccEEE
Q 005287 125 NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDL-ISMGFSDFPLLKLMTEVFGTAIWFNTIL 203 (704)
Q Consensus 125 ~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~-~t~~~~D~~lLk~L~~~fG~~~~k~vIV 203 (704)
..+-+++||.+|-... ++.....+.-..||..++|+.++. .+. ...+-+..+... ..|+.+
T Consensus 247 SSKlvTfiDLAGh~kY-----------~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~--tTrEHLgl~~AL-----~iPfFv 308 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKY-----------QKTTIHGLTGYTPHFACLVVSADRGITW--TTREHLGLIAAL-----NIPFFV 308 (591)
T ss_pred hcceEEEeecccchhh-----------heeeeeecccCCCceEEEEEEcCCCCcc--ccHHHHHHHHHh-----CCCeEE
Confidence 1235788998887432 111111122236898888877764 222 223344444443 579999
Q ss_pred EEEccCCCCCCC
Q 005287 204 VMTHSSSTLPEG 215 (704)
Q Consensus 204 VLTK~D~l~pde 215 (704)
++||.|+..+.+
T Consensus 309 lvtK~Dl~~~~~ 320 (591)
T KOG1143|consen 309 LVTKMDLVDRQG 320 (591)
T ss_pred EEEeeccccchh
Confidence 999999986543
No 481
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=93.68 E-value=0.051 Score=56.27 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=20.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~ 102 (704)
.++|+|++|+|||||++.|+|.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 33 ITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999986
No 482
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.67 E-value=0.053 Score=54.85 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=22.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
=.++|+|++|+|||||++.|+|...
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~~ 48 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLEK 48 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCCC
Confidence 4679999999999999999999753
No 483
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.66 E-value=2.2 Score=47.18 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=21.8
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~ 103 (704)
-..|.++|.-|+|||||+|.|.+..
T Consensus 188 f~VIgvlG~QgsGKStllslLaans 212 (491)
T KOG4181|consen 188 FTVIGVLGGQGSGKSTLLSLLAANS 212 (491)
T ss_pred eeEEEeecCCCccHHHHHHHHhccC
Confidence 3578899999999999999998863
No 484
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=93.65 E-value=0.054 Score=55.63 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=22.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~ 103 (704)
=.++|+|++|+|||||++.|+|..
T Consensus 30 e~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 30 KTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred CEEEEEeCCCCCHHHHHHHHhccC
Confidence 368999999999999999999975
No 485
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=93.64 E-value=0.054 Score=55.82 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=22.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~ 103 (704)
=.++|+|++|+|||||++.|.|..
T Consensus 30 e~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 30 EIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999975
No 486
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=93.63 E-value=0.056 Score=53.37 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~ 103 (704)
=.++|+|++|+|||||++.|.|..
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999965
No 487
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=93.62 E-value=0.054 Score=54.48 Aligned_cols=24 Identities=38% Similarity=0.638 Sum_probs=21.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
.++|+|++|+|||||++.|+|...
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (207)
T cd03369 36 KIGIVGRTGAGKSTLILALFRFLE 59 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhcccC
Confidence 689999999999999999999753
No 488
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.62 E-value=0.45 Score=49.28 Aligned_cols=22 Identities=23% Similarity=0.166 Sum_probs=19.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~ 102 (704)
.++|.|+.|+||||++..|.+-
T Consensus 33 ~~~itG~N~~GKStll~~i~~~ 54 (222)
T cd03287 33 CQIITGPNMGGKSSYIRQVALI 54 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999873
No 489
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.61 E-value=0.053 Score=56.17 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=21.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~ 103 (704)
.++|+|++|+|||||++.|+|..
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~Gl~ 53 (250)
T PRK14262 31 ITAIIGPSGCGKTTLLRSINRMN 53 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999999864
No 490
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=93.61 E-value=0.053 Score=56.41 Aligned_cols=26 Identities=23% Similarity=0.575 Sum_probs=22.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCcc
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTE 106 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~ 106 (704)
-+.++|+.|+|||||+++|+|.-...
T Consensus 31 iv~llG~NGaGKTTlLkti~Gl~~~~ 56 (237)
T COG0410 31 IVALLGRNGAGKTTLLKTIMGLVRPR 56 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 57899999999999999999976543
No 491
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.61 E-value=0.088 Score=51.90 Aligned_cols=21 Identities=38% Similarity=0.687 Sum_probs=17.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHh
Q 005287 80 IRILVLGKTGVGKSATINSIF 100 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLl 100 (704)
++.+.+|-+||||+|++-.-.
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YT 30 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYT 30 (219)
T ss_pred HHHHhhccCCCCceEEEEEec
Confidence 567899999999999875444
No 492
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.60 E-value=0.06 Score=55.72 Aligned_cols=28 Identities=18% Similarity=0.445 Sum_probs=23.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccc
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTET 107 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~v 107 (704)
=.++|+|++|+|||||+.+|-+-+....
T Consensus 29 evv~iiGpSGSGKSTlLRclN~LE~~~~ 56 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGLEEPDS 56 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCcCCCC
Confidence 3689999999999999999988765443
No 493
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.59 E-value=0.054 Score=54.22 Aligned_cols=23 Identities=39% Similarity=0.710 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
.+|+|+|+|||||||+...|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999876
No 494
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.56 E-value=0.055 Score=56.92 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=23.6
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCc
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKT 105 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a 105 (704)
.=.++|+|++|+|||||++.|+|....
T Consensus 26 Ge~~~IvG~nGsGKSTLlk~l~Gl~~p 52 (255)
T cd03236 26 GQVLGLVGPNGIGKSTALKILAGKLKP 52 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 347999999999999999999997643
No 495
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=93.56 E-value=0.054 Score=57.13 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=22.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
=.++|+|++|+|||||++.|+|...
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~Gl~~ 58 (272)
T PRK15056 34 SIAALVGVNGSGKSTLFKALMGFVR 58 (272)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3689999999999999999999753
No 496
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=93.55 E-value=0.056 Score=55.21 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=22.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
=.++|+|++|+|||||++.|+|...
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~~ 51 (230)
T TIGR03410 27 EVTCVLGRNGVGKTTLLKTLMGLLP 51 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3789999999999999999999753
No 497
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=93.55 E-value=0.049 Score=54.09 Aligned_cols=23 Identities=26% Similarity=0.582 Sum_probs=21.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~ 103 (704)
-|+++|++||||+|+++.|....
T Consensus 4 ~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 48999999999999999998875
No 498
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=93.55 E-value=0.055 Score=56.61 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=21.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~ 103 (704)
=.++|+|++|+|||||++.|+|..
T Consensus 40 e~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 40 QVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 368999999999999999999964
No 499
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=93.55 E-value=0.059 Score=55.92 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=22.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
.++|+|++|+|||||++.|+|...
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~~ 54 (253)
T TIGR02323 31 VLGIVGESGSGKSTLLGCLAGRLA 54 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999999753
No 500
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.53 E-value=0.056 Score=56.20 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=21.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
.++|+|++|+|||||++.|+|...
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (254)
T PRK14273 35 ITALIGPSGCGKSTFLRTLNRMND 58 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhcccc
Confidence 688999999999999999999653
Done!