Query 005287
Match_columns 704
No_of_seqs 406 out of 3264
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 21:00:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005287.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005287hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3def_A T7I23.11 protein; chlor 99.9 2.4E-25 8.1E-30 229.1 15.5 215 78-302 35-254 (262)
2 1h65_A Chloroplast outer envel 99.9 2.4E-23 8E-28 214.9 18.4 214 78-301 38-255 (270)
3 3lxx_A GTPase IMAP family memb 99.8 4.3E-18 1.5E-22 171.6 15.2 158 74-244 24-184 (239)
4 3lxw_A GTPase IMAP family memb 99.7 5.2E-17 1.8E-21 166.0 16.0 156 77-245 19-179 (247)
5 2xtp_A GTPase IMAP family memb 99.6 4.6E-15 1.6E-19 151.0 17.7 153 76-242 19-176 (260)
6 3t5d_A Septin-7; GTP-binding p 99.6 5.3E-15 1.8E-19 152.9 12.9 129 77-212 6-158 (274)
7 2hjg_A GTP-binding protein ENG 99.6 3.4E-16 1.2E-20 172.6 3.4 195 9-212 81-300 (436)
8 4dcu_A GTP-binding protein ENG 99.5 1.1E-15 3.7E-20 169.5 3.8 194 10-212 102-320 (456)
9 4dhe_A Probable GTP-binding pr 99.5 2.1E-14 7.1E-19 141.4 12.1 129 77-212 27-158 (223)
10 1wf3_A GTP-binding protein; GT 99.5 6.3E-14 2.2E-18 147.8 14.9 126 78-212 6-131 (301)
11 3iev_A GTP-binding protein ERA 99.5 4.7E-14 1.6E-18 148.8 13.7 128 75-211 6-135 (308)
12 2gj8_A MNME, tRNA modification 99.5 5E-13 1.7E-17 127.7 16.3 126 78-211 3-128 (172)
13 1mky_A Probable GTP-binding pr 99.5 1.1E-14 3.7E-19 160.7 4.4 196 8-212 79-306 (439)
14 1svi_A GTP-binding protein YSX 99.5 2.4E-13 8.3E-18 130.5 12.8 126 77-212 21-148 (195)
15 3pqc_A Probable GTP-binding pr 99.5 4.3E-13 1.5E-17 128.0 13.7 126 77-212 21-147 (195)
16 3i8s_A Ferrous iron transport 99.5 3.5E-13 1.2E-17 139.8 13.5 123 78-212 2-126 (274)
17 2dyk_A GTP-binding protein; GT 99.4 9.6E-13 3.3E-17 121.8 13.5 121 80-212 2-122 (161)
18 1mky_A Probable GTP-binding pr 99.4 5.1E-13 1.8E-17 147.4 13.6 121 81-211 3-123 (439)
19 3iby_A Ferrous iron transport 99.4 5.6E-13 1.9E-17 137.2 12.2 122 80-213 2-125 (256)
20 2qu8_A Putative nucleolar GTP- 99.4 2.8E-12 9.7E-17 127.7 16.8 131 77-213 27-157 (228)
21 3gee_A MNME, tRNA modification 99.4 7.3E-13 2.5E-17 148.2 9.3 125 78-212 232-357 (476)
22 3a1s_A Iron(II) transport prot 99.4 2.6E-12 8.9E-17 132.3 12.5 121 78-212 4-124 (258)
23 3qq5_A Small GTP-binding prote 99.4 5.9E-13 2E-17 147.0 7.9 196 76-286 31-246 (423)
24 3k53_A Ferrous iron transport 99.4 3.9E-12 1.3E-16 131.0 13.4 120 79-212 3-123 (271)
25 2erx_A GTP-binding protein DI- 99.4 4.1E-12 1.4E-16 118.2 12.2 120 78-212 2-123 (172)
26 2hjg_A GTP-binding protein ENG 99.3 6.9E-13 2.4E-17 146.2 7.2 123 80-213 4-126 (436)
27 4dcu_A GTP-binding protein ENG 99.3 7.9E-13 2.7E-17 146.5 7.0 124 79-213 23-146 (456)
28 2g6b_A RAS-related protein RAB 99.3 6.8E-12 2.3E-16 118.4 12.4 121 77-212 8-130 (180)
29 1ega_A Protein (GTP-binding pr 99.3 8.6E-13 2.9E-17 138.8 6.8 121 79-211 8-129 (301)
30 2wji_A Ferrous iron transport 99.3 5.3E-12 1.8E-16 119.2 11.5 119 79-211 3-121 (165)
31 4a9a_A Ribosome-interacting GT 99.3 2.9E-12 1E-16 139.4 10.8 124 78-211 71-195 (376)
32 1jwy_B Dynamin A GTPase domain 99.3 7.4E-12 2.5E-16 130.5 13.0 129 78-213 23-213 (315)
33 2wjg_A FEOB, ferrous iron tran 99.3 8.1E-12 2.8E-16 119.1 12.0 121 78-212 6-126 (188)
34 1kao_A RAP2A; GTP-binding prot 99.3 8.3E-12 2.8E-16 115.3 11.0 119 78-212 2-122 (167)
35 1xzp_A Probable tRNA modificat 99.3 1.4E-12 4.7E-17 146.3 6.8 120 79-212 243-364 (482)
36 2aka_B Dynamin-1; fusion prote 99.3 2.4E-11 8.3E-16 125.3 15.3 129 77-213 24-207 (299)
37 2cxx_A Probable GTP-binding pr 99.3 1.8E-11 6.2E-16 116.4 13.3 123 80-212 2-136 (190)
38 1ksh_A ARF-like protein 2; sma 99.3 2.6E-11 8.8E-16 115.6 14.3 116 77-212 16-133 (186)
39 2gf0_A GTP-binding protein DI- 99.3 1.5E-11 5.2E-16 118.0 12.6 121 77-212 6-128 (199)
40 3tkl_A RAS-related protein RAB 99.3 1.3E-11 4.3E-16 118.3 11.8 121 77-213 14-136 (196)
41 3geh_A MNME, tRNA modification 99.3 1E-12 3.6E-17 146.5 4.8 123 78-214 223-346 (462)
42 1u8z_A RAS-related protein RAL 99.3 1E-11 3.5E-16 114.9 10.7 119 78-212 3-123 (168)
43 1ek0_A Protein (GTP-binding pr 99.3 5.1E-12 1.7E-16 117.4 8.3 119 79-213 3-123 (170)
44 1z0j_A RAB-22, RAS-related pro 99.3 4.8E-12 1.6E-16 117.8 8.2 120 78-212 5-125 (170)
45 1z0f_A RAB14, member RAS oncog 99.3 1.2E-11 3.9E-16 116.2 10.2 121 77-212 13-134 (179)
46 3tw8_B RAS-related protein RAB 99.3 2.5E-11 8.6E-16 114.1 12.5 119 77-212 7-127 (181)
47 3b1v_A Ferrous iron uptake tra 99.3 1.1E-11 3.8E-16 128.9 11.1 119 79-212 3-121 (272)
48 2nzj_A GTP-binding protein REM 99.3 1.3E-11 4.3E-16 115.7 10.4 121 78-212 3-125 (175)
49 1upt_A ARL1, ADP-ribosylation 99.3 2.7E-11 9.3E-16 113.0 12.5 116 77-212 5-122 (171)
50 2a9k_A RAS-related protein RAL 99.3 3E-11 1E-15 114.1 12.8 120 77-212 16-137 (187)
51 4dsu_A GTPase KRAS, isoform 2B 99.3 1.7E-11 5.7E-16 116.4 11.0 118 78-211 3-122 (189)
52 3q72_A GTP-binding protein RAD 99.3 1.1E-11 3.6E-16 115.5 9.4 120 79-213 2-121 (166)
53 1zd9_A ADP-ribosylation factor 99.3 6.3E-11 2.2E-15 114.0 15.1 117 77-212 20-138 (188)
54 2y8e_A RAB-protein 6, GH09086P 99.3 1.5E-11 5E-16 115.5 10.4 119 78-212 13-133 (179)
55 2bov_A RAla, RAS-related prote 99.3 3.8E-11 1.3E-15 115.9 13.4 120 77-212 12-133 (206)
56 1c1y_A RAS-related protein RAP 99.3 1.7E-11 5.9E-16 113.7 10.6 118 79-212 3-122 (167)
57 2ce2_X GTPase HRAS; signaling 99.3 2.5E-11 8.6E-16 111.7 11.5 118 79-212 3-122 (166)
58 2lkc_A Translation initiation 99.3 1.8E-11 6.2E-16 115.2 10.6 116 77-212 6-121 (178)
59 3clv_A RAB5 protein, putative; 99.3 1.5E-11 5.1E-16 117.2 10.1 114 77-209 5-158 (208)
60 1zbd_A Rabphilin-3A; G protein 99.2 1.9E-11 6.5E-16 118.4 10.6 121 77-212 6-127 (203)
61 2bme_A RAB4A, RAS-related prot 99.2 2.4E-11 8.4E-16 115.4 11.1 120 77-212 8-129 (186)
62 3cph_A RAS-related protein SEC 99.2 3.9E-11 1.3E-15 116.6 12.7 119 77-211 18-138 (213)
63 2efe_B Small GTP-binding prote 99.2 1.8E-11 6E-16 115.6 9.8 120 77-212 10-131 (181)
64 1r2q_A RAS-related protein RAB 99.2 1.1E-11 3.9E-16 115.0 8.2 120 78-212 5-125 (170)
65 1r8s_A ADP-ribosylation factor 99.2 5.5E-11 1.9E-15 110.4 12.7 113 80-212 1-115 (164)
66 2fn4_A P23, RAS-related protei 99.2 3.1E-11 1.1E-15 113.4 11.1 120 77-212 7-128 (181)
67 1g16_A RAS-related protein SEC 99.2 2.7E-11 9.4E-16 112.7 10.4 118 78-211 2-121 (170)
68 2fg5_A RAB-22B, RAS-related pr 99.2 1.1E-11 3.9E-16 119.6 8.1 120 77-211 21-141 (192)
69 1z06_A RAS-related protein RAB 99.2 3.8E-11 1.3E-15 115.2 11.7 122 77-212 18-141 (189)
70 1zj6_A ADP-ribosylation factor 99.2 1.1E-10 3.9E-15 111.7 14.7 115 78-212 15-131 (187)
71 2p5s_A RAS and EF-hand domain 99.2 2.9E-11 9.9E-16 117.4 10.6 120 77-211 26-146 (199)
72 2oil_A CATX-8, RAS-related pro 99.2 1.4E-11 4.7E-16 118.4 8.2 122 76-212 22-144 (193)
73 3bc1_A RAS-related protein RAB 99.2 4.9E-11 1.7E-15 113.2 11.9 121 77-212 9-141 (195)
74 1wms_A RAB-9, RAB9, RAS-relate 99.2 4.8E-11 1.6E-15 112.2 11.7 120 78-211 6-129 (177)
75 2e87_A Hypothetical protein PH 99.2 8.2E-11 2.8E-15 126.3 14.9 127 77-211 165-293 (357)
76 2il1_A RAB12; G-protein, GDP, 99.2 2.8E-11 9.5E-16 117.0 10.1 122 75-212 22-145 (192)
77 2h17_A ADP-ribosylation factor 99.2 4.4E-11 1.5E-15 114.2 11.4 118 75-212 17-136 (181)
78 4bas_A ADP-ribosylation factor 99.2 4.7E-11 1.6E-15 114.6 11.5 120 75-212 13-141 (199)
79 1z2a_A RAS-related protein RAB 99.2 3.5E-11 1.2E-15 111.7 10.3 118 78-212 4-123 (168)
80 3t5g_A GTP-binding protein RHE 99.2 7.3E-11 2.5E-15 111.8 12.6 119 78-212 5-125 (181)
81 2h57_A ADP-ribosylation factor 99.2 2.4E-11 8.3E-16 116.7 9.4 118 77-212 19-140 (190)
82 2fh5_B SR-beta, signal recogni 99.2 6.3E-11 2.2E-15 115.9 12.3 117 78-212 6-129 (214)
83 3r7w_A Gtpase1, GTP-binding pr 99.2 5.1E-11 1.7E-15 125.4 12.3 125 78-212 2-129 (307)
84 2gf9_A RAS-related protein RAB 99.2 5.1E-11 1.7E-15 114.3 11.1 120 78-212 21-141 (189)
85 1z08_A RAS-related protein RAB 99.2 1.9E-11 6.4E-16 114.0 7.8 120 77-212 4-125 (170)
86 3dz8_A RAS-related protein RAB 99.2 8.9E-12 3E-16 120.0 5.6 122 75-211 19-141 (191)
87 2x2e_A Dynamin-1; nitration, h 99.2 4.6E-11 1.6E-15 128.0 11.6 129 79-213 31-212 (353)
88 3oes_A GTPase rhebl1; small GT 99.2 4.1E-11 1.4E-15 116.5 10.1 120 75-212 20-143 (201)
89 2qag_A Septin-2, protein NEDD5 99.2 1.3E-11 4.4E-16 133.2 6.9 130 77-212 35-188 (361)
90 2b6h_A ADP-ribosylation factor 99.2 1.6E-10 5.4E-15 112.0 13.8 116 77-212 27-144 (192)
91 1fzq_A ADP-ribosylation factor 99.2 3.1E-10 1.1E-14 108.8 15.5 115 78-212 15-131 (181)
92 2bcg_Y Protein YP2, GTP-bindin 99.2 1E-10 3.6E-15 113.6 12.3 120 77-212 6-127 (206)
93 4djt_A GTP-binding nuclear pro 99.2 4.2E-11 1.4E-15 117.5 9.5 121 76-212 8-131 (218)
94 2yc2_C IFT27, small RAB-relate 99.2 1.5E-11 5.1E-16 118.7 6.1 122 78-212 19-146 (208)
95 3kkq_A RAS-related protein M-R 99.2 1.2E-10 4.2E-15 110.4 12.3 121 76-212 15-137 (183)
96 2ged_A SR-beta, signal recogni 99.2 3.7E-11 1.3E-15 115.2 8.5 119 77-213 46-171 (193)
97 3con_A GTPase NRAS; structural 99.2 6.6E-11 2.3E-15 113.2 10.2 119 78-212 20-140 (190)
98 1x3s_A RAS-related protein RAB 99.2 2.5E-11 8.6E-16 115.9 6.9 118 78-211 14-134 (195)
99 2o52_A RAS-related protein RAB 99.2 5.4E-11 1.9E-15 115.9 9.3 119 77-211 23-143 (200)
100 1moz_A ARL1, ADP-ribosylation 99.2 3E-11 1E-15 114.5 7.2 116 77-212 16-133 (183)
101 2x77_A ADP-ribosylation factor 99.2 1.4E-10 4.9E-15 110.9 12.0 115 78-212 21-137 (189)
102 3t34_A Dynamin-related protein 99.2 2.3E-10 8E-15 122.6 15.0 126 81-213 36-218 (360)
103 2atv_A RERG, RAS-like estrogen 99.2 1.5E-10 5.1E-15 111.9 11.9 118 78-212 27-146 (196)
104 2a5j_A RAS-related protein RAB 99.2 9.9E-11 3.4E-15 112.7 10.6 120 77-212 19-140 (191)
105 1ky3_A GTP-binding protein YPT 99.2 6.7E-11 2.3E-15 111.2 9.1 121 77-211 6-131 (182)
106 3q85_A GTP-binding protein REM 99.2 1.5E-10 5E-15 108.1 11.3 120 79-212 2-123 (169)
107 2hxs_A RAB-26, RAS-related pro 99.2 5.8E-11 2E-15 111.7 8.5 122 77-212 4-129 (178)
108 2fu5_C RAS-related protein RAB 99.2 2.5E-11 8.6E-16 115.2 6.0 120 77-212 6-127 (183)
109 2qpt_A EH domain-containing pr 99.1 4.4E-11 1.5E-15 136.1 9.0 128 77-212 63-232 (550)
110 2hup_A RAS-related protein RAB 99.1 1.7E-10 5.9E-15 112.6 11.7 121 76-212 26-148 (201)
111 2iwr_A Centaurin gamma 1; ANK 99.1 2.3E-10 7.9E-15 108.0 12.0 113 78-211 6-121 (178)
112 2f7s_A C25KG, RAS-related prot 99.1 1.2E-10 4.1E-15 114.1 10.3 120 76-212 22-155 (217)
113 3gj0_A GTP-binding nuclear pro 99.1 8.3E-11 2.8E-15 116.0 9.2 122 75-212 11-133 (221)
114 2q3h_A RAS homolog gene family 99.1 2.3E-10 7.9E-15 110.6 12.0 118 76-212 17-138 (201)
115 3j2k_7 ERF3, eukaryotic polype 99.1 5E-10 1.7E-14 123.9 16.2 118 77-212 15-169 (439)
116 3sop_A Neuronal-specific septi 99.1 1.1E-10 3.6E-15 121.4 10.2 129 78-213 1-155 (270)
117 2qtf_A Protein HFLX, GTP-bindi 99.1 2.2E-10 7.4E-15 124.1 12.9 126 79-212 178-306 (364)
118 3llu_A RAS-related GTP-binding 99.1 1.5E-10 5.2E-15 112.2 10.6 128 74-212 15-143 (196)
119 1lnz_A SPO0B-associated GTP-bi 99.1 2E-11 6.8E-16 131.2 4.2 124 81-211 160-287 (342)
120 1vg8_A RAS-related protein RAB 99.1 1.6E-10 5.5E-15 111.8 10.1 121 77-211 6-130 (207)
121 2ew1_A RAS-related protein RAB 99.1 2E-10 6.8E-15 112.9 10.8 120 77-212 24-145 (201)
122 1f6b_A SAR1; gtpases, N-termin 99.1 2.4E-10 8.1E-15 111.5 10.6 114 78-211 24-139 (198)
123 3reg_A RHO-like small GTPase; 99.1 1.3E-10 4.6E-15 111.8 8.7 119 75-212 19-141 (194)
124 1m2o_B GTP-binding protein SAR 99.1 2.7E-10 9.1E-15 110.3 10.8 115 78-212 22-138 (190)
125 3zvr_A Dynamin-1; hydrolase, D 99.1 4.3E-10 1.5E-14 132.0 14.5 128 79-214 51-233 (772)
126 2qag_B Septin-6, protein NEDD5 99.1 1.8E-10 6.3E-15 127.1 10.4 129 78-213 41-191 (427)
127 2qag_C Septin-7; cell cycle, c 99.1 2.6E-10 9E-15 125.7 11.4 130 76-212 28-181 (418)
128 2j1l_A RHO-related GTP-binding 99.1 2.1E-10 7.2E-15 113.1 9.6 117 77-212 32-152 (214)
129 1wxq_A GTP-binding protein; st 99.1 1.1E-10 3.8E-15 127.8 8.2 89 80-175 1-113 (397)
130 1mh1_A RAC1; GTP-binding, GTPa 99.1 3.5E-10 1.2E-14 106.9 10.4 116 78-212 4-123 (186)
131 3c5c_A RAS-like protein 12; GD 99.1 6.6E-10 2.3E-14 107.0 12.4 119 77-211 19-140 (187)
132 1nrj_B SR-beta, signal recogni 99.1 5.3E-10 1.8E-14 109.6 11.7 119 77-213 10-135 (218)
133 2j69_A Bacterial dynamin-like 99.1 8E-11 2.7E-15 137.4 6.8 119 78-212 68-244 (695)
134 2atx_A Small GTP binding prote 99.1 5E-10 1.7E-14 107.6 11.2 116 78-212 17-136 (194)
135 1pui_A ENGB, probable GTP-bind 99.1 4.8E-10 1.6E-14 109.1 11.0 126 76-211 23-150 (210)
136 2gco_A H9, RHO-related GTP-bin 99.1 1E-10 3.5E-15 113.9 6.1 117 78-212 24-143 (201)
137 2fv8_A H6, RHO-related GTP-bin 99.1 2.9E-10 9.8E-15 111.2 9.3 117 78-212 24-143 (207)
138 3cpj_B GTP-binding protein YPT 99.1 3.2E-10 1.1E-14 112.3 9.3 120 77-212 11-132 (223)
139 3ihw_A Centg3; RAS, centaurin, 99.0 2E-09 6.9E-14 103.7 14.2 114 74-211 15-132 (184)
140 4gzl_A RAS-related C3 botulinu 99.0 1.8E-10 6.3E-15 112.6 6.7 117 77-212 28-148 (204)
141 3o47_A ADP-ribosylation factor 99.0 8.9E-10 3.1E-14 117.2 12.3 115 78-212 164-280 (329)
142 3t1o_A Gliding protein MGLA; G 99.0 1E-09 3.5E-14 104.5 10.7 122 77-212 12-149 (198)
143 3l0i_B RAS-related protein RAB 99.0 3.1E-11 1.1E-15 117.2 0.0 120 77-213 31-153 (199)
144 3cbq_A GTP-binding protein REM 99.0 2.1E-09 7E-14 104.8 12.8 123 76-212 20-144 (195)
145 1m7b_A RND3/RHOE small GTP-bin 99.0 6.6E-10 2.3E-14 106.2 9.1 116 77-211 5-124 (184)
146 3ec1_A YQEH GTPase; atnos1, at 99.0 3E-11 1E-15 130.9 -1.0 122 79-213 162-289 (369)
147 3h2y_A GTPase family protein; 99.0 5.9E-11 2E-15 128.6 1.1 122 79-212 160-287 (368)
148 2zej_A Dardarin, leucine-rich 99.0 6.4E-10 2.2E-14 106.7 7.9 117 79-211 2-125 (184)
149 3bwd_D RAC-like GTP-binding pr 99.0 3.9E-10 1.3E-14 106.5 5.9 117 77-212 6-126 (182)
150 3q3j_B RHO-related GTP-binding 99.0 5.6E-10 1.9E-14 110.3 7.3 118 76-212 24-145 (214)
151 2j0v_A RAC-like GTP-binding pr 99.0 1.5E-09 5E-14 106.0 10.1 117 77-212 7-127 (212)
152 3p26_A Elongation factor 1 alp 99.0 1.4E-09 4.8E-14 121.5 11.3 119 77-212 31-185 (483)
153 3lvq_E ARF-GAP with SH3 domain 99.0 1.2E-09 4.1E-14 121.7 10.4 116 77-212 320-437 (497)
154 1gwn_A RHO-related GTP-binding 99.0 4.4E-10 1.5E-14 110.7 5.8 116 77-211 26-145 (205)
155 2g3y_A GTP-binding protein GEM 99.0 2.6E-09 8.8E-14 106.7 11.4 121 77-211 35-158 (211)
156 2qnr_A Septin-2, protein NEDD5 98.9 2.9E-10 9.9E-15 119.7 4.0 130 77-212 16-169 (301)
157 3th5_A RAS-related C3 botulinu 98.5 9E-11 3.1E-15 114.1 0.0 118 77-212 28-148 (204)
158 1wb1_A Translation elongation 98.9 2.1E-09 7.1E-14 120.4 10.3 116 77-211 17-138 (482)
159 3izq_1 HBS1P, elongation facto 98.9 1.2E-09 4.2E-14 125.6 8.6 120 76-212 164-319 (611)
160 4dkx_A RAS-related protein RAB 98.9 5E-09 1.7E-13 105.2 10.2 118 78-212 12-132 (216)
161 2cjw_A GTP-binding protein GEM 98.9 2.5E-09 8.6E-14 103.9 7.7 121 78-211 5-127 (192)
162 3sjy_A Translation initiation 98.9 3E-09 1E-13 116.0 9.2 120 76-212 5-143 (403)
163 2c78_A Elongation factor TU-A; 98.9 3E-09 1E-13 116.0 8.9 116 77-211 9-141 (405)
164 1puj_A YLQF, conserved hypothe 98.9 2.2E-09 7.6E-14 112.2 7.3 64 77-143 118-181 (282)
165 3tr5_A RF-3, peptide chain rel 98.9 1.9E-09 6.5E-14 122.1 7.2 114 79-211 13-147 (528)
166 1zun_B Sulfate adenylate trans 98.9 7.7E-09 2.6E-13 113.9 11.7 116 78-211 23-170 (434)
167 2wkq_A NPH1-1, RAS-related C3 98.8 8.2E-09 2.8E-13 107.2 11.0 117 77-212 153-273 (332)
168 1d2e_A Elongation factor TU (E 98.8 5.8E-09 2E-13 113.6 9.9 115 78-211 2-132 (397)
169 1s0u_A EIF-2-gamma, translatio 98.8 1.6E-08 5.4E-13 110.5 13.1 120 77-213 6-150 (408)
170 2xex_A Elongation factor G; GT 98.8 8.4E-09 2.9E-13 120.4 10.4 117 77-212 8-141 (693)
171 2f9l_A RAB11B, member RAS onco 98.8 1.2E-08 4.3E-13 98.9 10.0 117 79-211 5-123 (199)
172 1kk1_A EIF2gamma; initiation o 98.8 2.3E-08 7.8E-13 109.2 13.0 118 77-211 8-150 (410)
173 2elf_A Protein translation elo 98.8 1.1E-08 3.8E-13 110.8 9.7 101 81-210 23-125 (370)
174 1jal_A YCHF protein; nucleotid 98.8 5.9E-09 2E-13 113.0 7.0 89 79-174 2-107 (363)
175 3mca_A HBS1, elongation factor 98.8 1.8E-09 6.1E-14 123.9 2.8 117 78-211 176-328 (592)
176 1f60_A Elongation factor EEF1A 98.8 3.6E-09 1.2E-13 117.6 4.9 117 78-211 6-158 (458)
177 2h5e_A Peptide chain release f 98.8 1.9E-08 6.4E-13 114.0 10.6 115 78-211 12-147 (529)
178 1oix_A RAS-related protein RAB 98.7 3E-08 1E-12 96.1 10.2 119 77-211 27-147 (191)
179 1jny_A EF-1-alpha, elongation 98.7 9.3E-09 3.2E-13 113.4 7.5 118 78-212 5-158 (435)
180 1udx_A The GTP-binding protein 98.7 2.5E-08 8.5E-13 109.9 10.0 121 81-211 159-282 (416)
181 1dar_A EF-G, elongation factor 98.7 3.7E-08 1.3E-12 114.9 11.1 116 78-212 11-143 (691)
182 1r5b_A Eukaryotic peptide chai 98.7 2.1E-08 7.2E-13 111.7 8.3 116 78-211 42-194 (467)
183 2www_A Methylmalonic aciduria 98.7 4.3E-09 1.5E-13 113.1 2.0 25 77-101 72-96 (349)
184 1f5n_A Interferon-induced guan 98.7 6.8E-08 2.3E-12 110.7 11.8 64 78-141 37-105 (592)
185 1zo1_I IF2, translation initia 98.7 1.3E-08 4.5E-13 114.6 5.5 115 78-212 3-117 (501)
186 3dpu_A RAB family protein; roc 98.6 7.9E-08 2.7E-12 108.4 11.7 116 76-212 38-164 (535)
187 2rdo_7 EF-G, elongation factor 98.6 1.4E-07 4.6E-12 110.4 13.7 117 77-212 8-148 (704)
188 2ohf_A Protein OLA1, GTP-bindi 98.6 2.1E-08 7.3E-13 109.8 6.4 92 76-174 19-127 (396)
189 1ni3_A YCHF GTPase, YCHF GTP-b 98.6 4.7E-08 1.6E-12 106.9 9.0 94 75-174 16-126 (392)
190 3izy_P Translation initiation 98.6 2.8E-09 9.7E-14 120.9 -0.7 115 78-212 3-118 (537)
191 2j37_W Signal recognition part 98.6 3.1E-07 1.1E-11 103.5 15.8 120 77-212 99-254 (504)
192 3avx_A Elongation factor TS, e 98.6 8.4E-08 2.9E-12 116.5 11.7 118 75-211 292-425 (1289)
193 3cb4_D GTP-binding protein LEP 98.6 1.1E-07 3.7E-12 109.3 10.1 115 79-212 4-137 (599)
194 2dby_A GTP-binding protein; GD 98.6 6.1E-08 2.1E-12 105.2 7.5 88 80-174 2-110 (368)
195 1n0u_A EF-2, elongation factor 98.6 8.1E-08 2.8E-12 114.4 9.2 114 79-211 19-163 (842)
196 2ywe_A GTP-binding protein LEP 98.6 1.1E-07 3.8E-12 109.2 9.6 114 79-211 6-138 (600)
197 3c5h_A Glucocorticoid receptor 98.6 8.3E-08 2.8E-12 98.0 7.6 27 76-102 16-51 (255)
198 3cnl_A YLQF, putative uncharac 98.5 2.7E-08 9.4E-13 102.8 3.6 60 80-142 100-159 (262)
199 3p32_A Probable GTPase RV1496/ 98.5 5.7E-08 1.9E-12 104.3 5.5 109 77-211 77-230 (355)
200 2p67_A LAO/AO transport system 98.5 1.3E-07 4.4E-12 101.0 8.2 108 78-211 55-207 (341)
201 1tq4_A IIGP1, interferon-induc 98.5 6.9E-08 2.4E-12 106.3 4.6 116 79-212 69-189 (413)
202 1g7s_A Translation initiation 98.4 4.6E-07 1.6E-11 104.1 10.4 115 78-212 4-136 (594)
203 2dy1_A Elongation factor G; tr 98.4 1E-06 3.5E-11 102.4 12.5 115 78-211 8-139 (665)
204 2qm8_A GTPase/ATPase; G protei 98.4 2.9E-07 9.8E-12 98.5 7.2 24 78-101 54-77 (337)
205 3r7w_B Gtpase2, GTP-binding pr 98.3 1.1E-06 3.9E-11 93.9 9.6 119 81-212 1-120 (331)
206 3dm5_A SRP54, signal recogniti 98.3 4E-06 1.4E-10 93.0 13.8 119 78-211 99-252 (443)
207 1yrb_A ATP(GTP)binding protein 98.3 2.3E-07 7.8E-12 93.6 2.6 31 78-108 13-48 (262)
208 3vqt_A RF-3, peptide chain rel 98.2 3.5E-06 1.2E-10 95.8 11.6 113 80-211 32-165 (548)
209 3szr_A Interferon-induced GTP- 98.2 3E-06 1E-10 97.4 11.2 82 127-214 147-230 (608)
210 2v3c_C SRP54, signal recogniti 98.2 8.4E-07 2.9E-11 98.2 5.8 120 78-211 98-251 (432)
211 2wsm_A Hydrogenase expression/ 98.1 2.4E-06 8.1E-11 83.8 6.3 24 79-102 30-53 (221)
212 3kl4_A SRP54, signal recogniti 98.0 1.6E-05 5.4E-10 88.1 11.4 119 78-211 96-251 (433)
213 3j25_A Tetracycline resistance 98.0 1.7E-06 5.8E-11 100.0 3.8 113 81-212 4-133 (638)
214 1t9h_A YLOQ, probable GTPase E 98.0 2.4E-07 8.1E-12 98.3 -3.3 58 79-140 173-237 (307)
215 4fn5_A EF-G 1, elongation fact 97.9 2.7E-05 9.1E-10 91.1 10.8 113 80-211 14-150 (709)
216 3q5d_A Atlastin-1; G protein, 97.9 1.6E-05 5.6E-10 88.3 8.5 63 78-141 66-154 (447)
217 1j8m_F SRP54, signal recogniti 97.8 5.8E-05 2E-09 79.3 9.3 120 79-211 98-252 (297)
218 2xxa_A Signal recognition part 97.6 0.00054 1.9E-08 75.7 15.1 119 78-211 99-253 (433)
219 2yhs_A FTSY, cell division pro 97.6 0.00016 5.4E-09 81.3 10.2 122 78-211 292-451 (503)
220 1rj9_A FTSY, signal recognitio 97.6 0.00014 4.6E-09 76.8 8.9 24 78-101 101-124 (304)
221 3e70_C DPA, signal recognition 97.5 0.00014 4.8E-09 77.6 7.4 120 77-211 127-281 (328)
222 2yv5_A YJEQ protein; hydrolase 97.5 9.4E-05 3.2E-09 77.7 5.7 58 79-140 165-229 (302)
223 2hf9_A Probable hydrogenase ni 97.4 0.00023 7.8E-09 69.8 7.7 24 79-102 38-61 (226)
224 1u0l_A Probable GTPase ENGC; p 97.4 8.5E-05 2.9E-09 77.8 4.5 59 80-141 170-235 (301)
225 2px0_A Flagellar biosynthesis 97.4 0.0004 1.4E-08 72.9 8.9 119 78-211 104-252 (296)
226 2rcn_A Probable GTPase ENGC; Y 97.3 7.5E-05 2.6E-09 80.7 3.1 58 80-140 216-281 (358)
227 2og2_A Putative signal recogni 97.2 0.0017 5.7E-08 70.2 12.2 25 78-102 156-180 (359)
228 3b9q_A Chloroplast SRP recepto 97.2 0.0016 5.5E-08 68.5 11.0 25 78-102 99-123 (302)
229 4ido_A Atlastin-1; GTPase, GTP 97.1 0.0039 1.3E-07 69.4 13.1 64 79-142 67-155 (457)
230 1vma_A Cell division protein F 97.1 0.00023 7.9E-09 75.2 3.2 24 78-101 103-126 (306)
231 2ffh_A Protein (FFH); SRP54, s 97.0 0.0021 7.3E-08 70.9 10.2 119 78-211 97-250 (425)
232 4fid_A G protein alpha subunit 96.8 0.0084 2.9E-07 64.3 12.8 84 115-211 149-241 (340)
233 1zu4_A FTSY; GTPase, signal re 96.7 0.0016 5.5E-08 69.1 6.4 122 78-211 104-267 (320)
234 3ney_A 55 kDa erythrocyte memb 96.7 9.6E-05 3.3E-09 73.5 -3.0 58 79-138 19-77 (197)
235 1ls1_A Signal recognition part 96.6 0.0011 3.8E-08 69.3 3.7 119 78-211 97-250 (295)
236 1kgd_A CASK, peripheral plasma 96.2 0.0011 3.7E-08 63.6 1.2 24 80-103 6-29 (180)
237 1ye8_A Protein THEP1, hypothet 95.7 0.0046 1.6E-07 59.9 2.7 24 80-103 1-24 (178)
238 1lvg_A Guanylate kinase, GMP k 95.6 0.0042 1.4E-07 60.6 2.5 23 80-102 5-27 (198)
239 1znw_A Guanylate kinase, GMP k 95.5 0.0054 1.9E-07 59.9 2.5 25 79-103 20-44 (207)
240 3tr0_A Guanylate kinase, GMP k 95.3 0.0069 2.4E-07 58.2 2.5 24 80-103 8-31 (205)
241 1zp6_A Hypothetical protein AT 95.2 0.013 4.4E-07 55.7 4.3 24 79-102 9-32 (191)
242 3a00_A Guanylate kinase, GMP k 95.2 0.0075 2.6E-07 57.9 2.4 23 81-103 3-25 (186)
243 1z6g_A Guanylate kinase; struc 95.2 0.0076 2.6E-07 59.8 2.5 23 81-103 25-47 (218)
244 3tif_A Uncharacterized ABC tra 95.1 0.0097 3.3E-07 60.1 3.1 24 81-104 33-56 (235)
245 2pcj_A ABC transporter, lipopr 95.0 0.011 3.7E-07 59.2 3.1 24 81-104 32-55 (224)
246 3h4m_A Proteasome-activating n 95.0 0.075 2.6E-06 53.8 9.4 24 79-102 51-74 (285)
247 1s96_A Guanylate kinase, GMP k 95.0 0.0091 3.1E-07 59.8 2.5 26 79-104 16-41 (219)
248 3tau_A Guanylate kinase, GMP k 94.9 0.01 3.6E-07 58.1 2.7 26 79-104 8-33 (208)
249 3c8u_A Fructokinase; YP_612366 94.9 0.011 3.9E-07 57.6 2.8 27 77-103 20-46 (208)
250 2cbz_A Multidrug resistance-as 94.8 0.014 4.7E-07 59.0 3.3 23 81-103 33-55 (237)
251 4gp7_A Metallophosphoesterase; 94.8 0.013 4.4E-07 55.7 3.0 22 80-101 10-31 (171)
252 4b4t_L 26S protease subunit RP 94.7 0.098 3.4E-06 57.9 10.1 73 78-176 214-286 (437)
253 1mv5_A LMRA, multidrug resista 94.7 0.015 5E-07 58.9 3.3 25 80-104 29-53 (243)
254 3asz_A Uridine kinase; cytidin 94.7 0.015 5.1E-07 56.4 3.2 25 78-102 5-29 (211)
255 1fnn_A CDC6P, cell division co 94.7 0.14 4.8E-06 53.6 10.9 22 81-102 46-67 (389)
256 1b0u_A Histidine permease; ABC 94.7 0.014 4.8E-07 59.9 3.1 23 81-103 34-56 (262)
257 1g6h_A High-affinity branched- 94.7 0.015 5.2E-07 59.4 3.3 24 81-104 35-58 (257)
258 2qz4_A Paraplegin; AAA+, SPG7, 94.7 0.24 8.1E-06 49.1 12.0 24 78-101 38-61 (262)
259 2eyu_A Twitching motility prot 94.7 0.013 4.5E-07 60.1 2.8 24 79-102 25-48 (261)
260 2onk_A Molybdate/tungstate ABC 94.7 0.016 5.5E-07 58.8 3.4 24 81-104 26-49 (240)
261 2ff7_A Alpha-hemolysin translo 94.7 0.016 5.4E-07 59.0 3.3 23 81-103 37-59 (247)
262 4g1u_C Hemin import ATP-bindin 94.6 0.016 5.4E-07 59.8 3.3 24 81-104 39-62 (266)
263 2pze_A Cystic fibrosis transme 94.6 0.016 5.6E-07 58.1 3.3 23 81-103 36-58 (229)
264 3gfo_A Cobalt import ATP-bindi 94.6 0.016 5.6E-07 60.0 3.3 24 81-104 36-59 (275)
265 1sgw_A Putative ABC transporte 94.6 0.016 5.4E-07 57.9 3.1 24 81-104 37-60 (214)
266 4dzz_A Plasmid partitioning pr 94.6 0.13 4.4E-06 49.1 9.4 68 126-210 75-142 (206)
267 2d2e_A SUFC protein; ABC-ATPas 94.5 0.018 6.2E-07 58.5 3.4 22 81-102 31-52 (250)
268 1ji0_A ABC transporter; ATP bi 94.5 0.018 6.1E-07 58.2 3.3 24 81-104 34-57 (240)
269 1ex7_A Guanylate kinase; subst 94.5 0.013 4.3E-07 57.6 2.1 22 82-103 4-25 (186)
270 2j41_A Guanylate kinase; GMP, 94.5 0.019 6.6E-07 55.0 3.3 25 79-103 6-30 (207)
271 2ghi_A Transport protein; mult 94.5 0.018 6.2E-07 59.0 3.3 23 81-103 48-70 (260)
272 2zu0_C Probable ATP-dependent 94.5 0.019 6.5E-07 59.1 3.4 22 81-102 48-69 (267)
273 4b4t_I 26S protease regulatory 94.5 0.14 4.7E-06 56.7 10.4 72 79-176 216-287 (437)
274 2olj_A Amino acid ABC transpor 94.5 0.019 6.4E-07 59.2 3.3 24 81-104 52-75 (263)
275 2qi9_C Vitamin B12 import ATP- 94.4 0.019 6.4E-07 58.7 3.3 24 81-104 28-51 (249)
276 2ixe_A Antigen peptide transpo 94.4 0.019 6.5E-07 59.3 3.3 23 81-103 47-69 (271)
277 1vpl_A ABC transporter, ATP-bi 94.4 0.02 6.8E-07 58.7 3.3 24 81-104 43-66 (256)
278 2ihy_A ABC transporter, ATP-bi 94.3 0.02 7E-07 59.4 3.3 24 81-104 49-72 (279)
279 2yz2_A Putative ABC transporte 94.3 0.021 7.2E-07 58.6 3.3 24 81-104 35-58 (266)
280 2nq2_C Hypothetical ABC transp 94.3 0.021 7.2E-07 58.3 3.2 24 81-104 33-56 (253)
281 4b4t_J 26S protease regulatory 94.3 0.19 6.7E-06 55.0 11.0 72 79-176 182-253 (405)
282 2bdt_A BH3686; alpha-beta prot 94.2 0.019 6.3E-07 54.8 2.5 21 81-101 4-24 (189)
283 3nh6_A ATP-binding cassette SU 94.2 0.016 5.6E-07 61.0 2.3 24 80-103 81-104 (306)
284 4b4t_K 26S protease regulatory 94.1 0.12 4.2E-06 57.0 9.1 71 79-175 206-276 (428)
285 2v9p_A Replication protein E1; 94.1 0.02 6.8E-07 60.4 2.7 24 79-102 126-149 (305)
286 2gza_A Type IV secretion syste 94.1 0.024 8.2E-07 60.8 3.2 24 80-103 176-199 (361)
287 2bbw_A Adenylate kinase 4, AK4 94.0 0.027 9.4E-07 56.3 3.4 27 79-105 27-56 (246)
288 2qor_A Guanylate kinase; phosp 94.0 0.025 8.7E-07 54.9 3.0 25 79-103 12-36 (204)
289 1kag_A SKI, shikimate kinase I 94.0 0.022 7.5E-07 53.2 2.5 23 80-102 5-27 (173)
290 2i3b_A HCR-ntpase, human cance 94.0 0.019 6.4E-07 56.2 2.1 23 81-103 3-25 (189)
291 3lnc_A Guanylate kinase, GMP k 94.0 0.017 5.8E-07 57.1 1.8 24 80-103 28-52 (231)
292 1htw_A HI0065; nucleotide-bind 93.9 0.025 8.5E-07 53.8 2.8 24 80-103 34-57 (158)
293 4b4t_H 26S protease regulatory 93.9 0.21 7.3E-06 55.6 10.6 108 78-211 242-361 (467)
294 2pjz_A Hypothetical protein ST 93.9 0.028 9.5E-07 57.9 3.3 23 81-103 32-54 (263)
295 4a74_A DNA repair and recombin 93.9 0.023 7.9E-07 55.2 2.6 23 80-102 26-48 (231)
296 3b85_A Phosphate starvation-in 93.9 0.017 5.9E-07 57.3 1.7 22 81-102 24-45 (208)
297 3jvv_A Twitching mobility prot 93.9 0.023 7.8E-07 61.1 2.7 23 80-102 124-146 (356)
298 2qt1_A Nicotinamide riboside k 93.8 0.052 1.8E-06 52.5 4.9 30 74-103 16-45 (207)
299 2bbs_A Cystic fibrosis transme 93.8 0.032 1.1E-06 58.3 3.4 24 81-104 66-89 (290)
300 3b9p_A CG5977-PA, isoform A; A 93.8 0.31 1.1E-05 49.5 10.8 24 79-102 54-77 (297)
301 2pt7_A CAG-ALFA; ATPase, prote 93.7 0.025 8.5E-07 60.0 2.6 23 81-103 173-195 (330)
302 4eun_A Thermoresistant glucoki 93.7 0.031 1.1E-06 54.1 3.0 24 79-102 29-52 (200)
303 1lv7_A FTSH; alpha/beta domain 93.7 0.23 7.9E-06 49.6 9.5 24 79-102 45-68 (257)
304 2f1r_A Molybdopterin-guanine d 93.6 0.018 6.2E-07 55.5 1.1 22 81-102 4-25 (171)
305 3aez_A Pantothenate kinase; tr 93.6 0.036 1.2E-06 58.4 3.4 27 76-102 87-113 (312)
306 2ewv_A Twitching motility prot 93.5 0.028 9.7E-07 60.6 2.7 24 79-102 136-159 (372)
307 1ly1_A Polynucleotide kinase; 93.5 0.043 1.5E-06 51.1 3.5 22 80-101 3-24 (181)
308 3lw7_A Adenylate kinase relate 93.4 0.04 1.4E-06 50.5 3.2 20 80-99 2-21 (179)
309 3fvq_A Fe(3+) IONS import ATP- 93.4 0.036 1.2E-06 59.8 3.3 24 81-104 32-55 (359)
310 2jeo_A Uridine-cytidine kinase 93.4 0.039 1.3E-06 55.3 3.3 25 78-102 24-48 (245)
311 2ehv_A Hypothetical protein PH 93.4 0.038 1.3E-06 54.4 3.0 21 80-100 31-51 (251)
312 1p9r_A General secretion pathw 93.4 0.03 1E-06 61.6 2.5 23 80-102 168-190 (418)
313 1cke_A CK, MSSA, protein (cyti 93.4 0.036 1.2E-06 54.1 2.9 24 79-102 5-28 (227)
314 3uie_A Adenylyl-sulfate kinase 93.3 0.041 1.4E-06 53.2 3.2 24 79-102 25-48 (200)
315 3tui_C Methionine import ATP-b 93.3 0.037 1.3E-06 59.9 3.2 24 81-104 56-79 (366)
316 1knq_A Gluconate kinase; ALFA/ 93.3 0.048 1.6E-06 51.1 3.5 23 79-101 8-30 (175)
317 1z47_A CYSA, putative ABC-tran 93.3 0.039 1.3E-06 59.5 3.2 24 81-104 43-66 (355)
318 2oap_1 GSPE-2, type II secreti 93.3 0.035 1.2E-06 62.5 3.0 24 80-103 261-284 (511)
319 3kb2_A SPBC2 prophage-derived 93.3 0.045 1.5E-06 50.6 3.2 21 81-101 3-23 (173)
320 1d2n_A N-ethylmaleimide-sensit 93.2 0.24 8.3E-06 49.9 8.9 25 78-102 63-87 (272)
321 1np6_A Molybdopterin-guanine d 93.1 0.036 1.2E-06 53.6 2.5 23 80-102 7-29 (174)
322 1lw7_A Transcriptional regulat 93.1 0.033 1.1E-06 59.4 2.4 25 79-103 170-194 (365)
323 2if2_A Dephospho-COA kinase; a 93.1 0.041 1.4E-06 52.9 2.8 22 80-101 2-23 (204)
324 2yyz_A Sugar ABC transporter, 93.1 0.042 1.4E-06 59.2 3.2 23 81-103 31-53 (359)
325 3ec2_A DNA replication protein 93.1 0.033 1.1E-06 52.7 2.1 24 79-102 38-61 (180)
326 2it1_A 362AA long hypothetical 93.1 0.043 1.5E-06 59.2 3.2 23 81-103 31-53 (362)
327 1jjv_A Dephospho-COA kinase; P 93.1 0.053 1.8E-06 52.3 3.5 22 80-101 3-24 (206)
328 3rlf_A Maltose/maltodextrin im 93.1 0.043 1.5E-06 59.7 3.2 24 81-104 31-54 (381)
329 1g29_1 MALK, maltose transport 93.1 0.044 1.5E-06 59.3 3.2 24 81-104 31-54 (372)
330 3qf7_A RAD50; ABC-ATPase, ATPa 93.0 0.16 5.6E-06 54.4 7.6 21 79-100 24-44 (365)
331 2cdn_A Adenylate kinase; phosp 93.0 0.064 2.2E-06 51.6 4.0 28 74-101 15-42 (201)
332 1v43_A Sugar-binding transport 92.9 0.047 1.6E-06 59.2 3.2 23 81-103 39-61 (372)
333 1sky_E F1-ATPase, F1-ATP synth 92.9 0.051 1.7E-06 60.7 3.5 23 80-102 152-174 (473)
334 3t15_A Ribulose bisphosphate c 92.8 0.15 5.1E-06 52.8 6.6 26 76-101 33-58 (293)
335 1xwi_A SKD1 protein; VPS4B, AA 92.8 0.43 1.5E-05 49.9 10.3 24 79-102 45-68 (322)
336 2rhm_A Putative kinase; P-loop 92.7 0.072 2.5E-06 50.3 3.9 24 78-101 4-27 (193)
337 3d31_A Sulfate/molybdate ABC t 92.7 0.039 1.3E-06 59.2 2.2 23 81-103 28-50 (348)
338 1sq5_A Pantothenate kinase; P- 92.7 0.062 2.1E-06 56.1 3.6 26 77-102 78-103 (308)
339 3gd7_A Fusion complex of cysti 92.7 0.055 1.9E-06 59.0 3.3 23 81-103 49-71 (390)
340 3fb4_A Adenylate kinase; psych 92.6 0.062 2.1E-06 52.1 3.3 22 80-101 1-22 (216)
341 1kht_A Adenylate kinase; phosp 92.6 0.066 2.3E-06 50.3 3.4 23 79-101 3-25 (192)
342 1rz3_A Hypothetical protein rb 92.6 0.069 2.4E-06 51.8 3.6 24 78-101 21-44 (201)
343 1qhx_A CPT, protein (chloramph 92.5 0.069 2.4E-06 50.0 3.4 23 80-102 4-26 (178)
344 2jaq_A Deoxyguanosine kinase; 92.5 0.068 2.3E-06 50.8 3.3 21 81-101 2-22 (205)
345 3cm0_A Adenylate kinase; ATP-b 92.4 0.071 2.4E-06 50.3 3.4 22 79-100 4-25 (186)
346 2ce7_A Cell division protein F 92.4 0.49 1.7E-05 52.8 10.6 23 80-102 50-72 (476)
347 4b4t_M 26S protease regulatory 92.4 0.29 9.8E-06 54.1 8.7 73 78-176 214-286 (434)
348 1nks_A Adenylate kinase; therm 92.4 0.073 2.5E-06 50.0 3.4 21 81-101 3-23 (194)
349 1oxx_K GLCV, glucose, ABC tran 92.4 0.037 1.3E-06 59.4 1.5 23 81-103 33-55 (353)
350 3dl0_A Adenylate kinase; phosp 92.4 0.07 2.4E-06 51.8 3.3 22 80-101 1-22 (216)
351 3t61_A Gluconokinase; PSI-biol 92.3 0.066 2.3E-06 51.6 3.1 23 79-101 18-40 (202)
352 3vaa_A Shikimate kinase, SK; s 92.2 0.074 2.5E-06 51.3 3.3 22 80-101 26-47 (199)
353 4e22_A Cytidylate kinase; P-lo 92.2 0.085 2.9E-06 53.3 3.8 22 79-100 27-48 (252)
354 3tqc_A Pantothenate kinase; bi 92.0 0.081 2.8E-06 56.2 3.5 27 76-102 89-115 (321)
355 2w0m_A SSO2452; RECA, SSPF, un 91.9 0.065 2.2E-06 51.8 2.5 22 80-101 24-45 (235)
356 2kjq_A DNAA-related protein; s 91.9 0.046 1.6E-06 51.1 1.4 25 79-103 36-60 (149)
357 3trf_A Shikimate kinase, SK; a 91.9 0.088 3E-06 49.7 3.3 21 80-100 6-26 (185)
358 1ixz_A ATP-dependent metallopr 91.9 0.065 2.2E-06 53.5 2.5 22 82-103 52-73 (254)
359 1tev_A UMP-CMP kinase; ploop, 91.8 0.096 3.3E-06 49.3 3.5 22 79-100 3-24 (196)
360 1y63_A LMAJ004144AAA protein; 91.8 0.11 3.9E-06 49.5 4.0 25 78-102 9-33 (184)
361 3kta_A Chromosome segregation 91.8 0.088 3E-06 49.6 3.1 21 81-101 28-48 (182)
362 2plr_A DTMP kinase, probable t 91.8 0.1 3.5E-06 49.8 3.7 23 79-101 4-26 (213)
363 2vp4_A Deoxynucleoside kinase; 91.7 0.078 2.7E-06 52.6 2.9 26 77-102 18-43 (230)
364 1odf_A YGR205W, hypothetical 3 91.7 0.091 3.1E-06 54.8 3.5 26 77-102 29-54 (290)
365 2v54_A DTMP kinase, thymidylat 91.7 0.11 3.7E-06 49.7 3.7 24 79-102 4-27 (204)
366 1uf9_A TT1252 protein; P-loop, 91.6 0.12 4.1E-06 49.2 3.9 25 78-102 7-31 (203)
367 3b60_A Lipid A export ATP-bind 91.6 0.087 3E-06 59.9 3.4 23 81-103 371-393 (582)
368 1yqt_A RNAse L inhibitor; ATP- 91.6 0.089 3E-06 59.5 3.4 27 78-104 46-72 (538)
369 2x8a_A Nuclear valosin-contain 91.6 0.072 2.4E-06 54.8 2.4 21 82-102 47-67 (274)
370 1e4v_A Adenylate kinase; trans 91.5 0.1 3.5E-06 50.8 3.4 22 80-101 1-22 (214)
371 2c95_A Adenylate kinase 1; tra 91.5 0.12 4.1E-06 48.9 3.8 23 79-101 9-31 (196)
372 1nn5_A Similar to deoxythymidy 91.5 0.12 4.1E-06 49.6 3.8 24 78-101 8-31 (215)
373 1nij_A Hypothetical protein YJ 91.4 0.06 2.1E-06 56.5 1.7 23 81-103 6-28 (318)
374 1zak_A Adenylate kinase; ATP:A 91.4 0.1 3.5E-06 51.1 3.3 23 79-101 5-27 (222)
375 1aky_A Adenylate kinase; ATP:A 91.3 0.11 3.9E-06 50.6 3.6 23 79-101 4-26 (220)
376 2wwf_A Thymidilate kinase, put 91.3 0.12 4.2E-06 49.6 3.7 24 78-101 9-32 (212)
377 3b5x_A Lipid A export ATP-bind 91.3 0.093 3.2E-06 59.7 3.2 23 81-103 371-393 (582)
378 1cip_A Protein (guanine nucleo 91.3 0.18 6.2E-06 54.1 5.3 85 114-211 180-273 (353)
379 2npi_A Protein CLP1; CLP1-PCF1 91.3 0.072 2.5E-06 59.2 2.2 24 80-103 139-162 (460)
380 1cr0_A DNA primase/helicase; R 91.3 0.083 2.8E-06 54.2 2.6 23 80-102 36-58 (296)
381 1jbk_A CLPB protein; beta barr 91.2 0.11 3.9E-06 47.8 3.3 24 79-102 43-66 (195)
382 1zd8_A GTP:AMP phosphotransfer 91.2 0.12 4E-06 50.9 3.5 23 79-101 7-29 (227)
383 3ohm_A Guanine nucleotide-bind 91.2 0.35 1.2E-05 51.4 7.4 85 114-211 154-247 (327)
384 2v1u_A Cell division control p 91.1 0.32 1.1E-05 50.6 6.9 24 79-102 44-67 (387)
385 1gtv_A TMK, thymidylate kinase 91.1 0.06 2E-06 51.9 1.2 22 81-102 2-23 (214)
386 1zcb_A G alpha I/13; GTP-bindi 91.1 0.23 7.8E-06 53.5 5.9 84 115-211 189-281 (362)
387 1gvn_B Zeta; postsegregational 91.0 0.12 4.1E-06 53.5 3.5 25 77-101 31-55 (287)
388 3exa_A TRNA delta(2)-isopenten 91.0 0.14 4.8E-06 54.4 4.1 86 80-170 4-98 (322)
389 2yvu_A Probable adenylyl-sulfa 91.0 0.16 5.4E-06 48.2 4.1 25 78-102 12-36 (186)
390 3tlx_A Adenylate kinase 2; str 91.0 0.14 4.6E-06 51.5 3.8 24 78-101 28-51 (243)
391 2pt5_A Shikimate kinase, SK; a 90.9 0.13 4.3E-06 47.7 3.2 21 81-101 2-22 (168)
392 3iij_A Coilin-interacting nucl 90.9 0.14 4.8E-06 48.2 3.6 22 79-100 11-32 (180)
393 1iy2_A ATP-dependent metallopr 90.8 0.094 3.2E-06 53.3 2.5 22 82-103 76-97 (278)
394 2obl_A ESCN; ATPase, hydrolase 90.8 0.1 3.5E-06 55.8 2.8 25 79-103 71-95 (347)
395 2bwj_A Adenylate kinase 5; pho 90.8 0.14 4.9E-06 48.5 3.5 23 79-101 12-34 (199)
396 3vfd_A Spastin; ATPase, microt 90.7 0.94 3.2E-05 48.4 10.3 24 79-102 148-171 (389)
397 2pez_A Bifunctional 3'-phospho 90.7 0.13 4.3E-06 48.6 3.1 23 79-101 5-27 (179)
398 3j16_B RLI1P; ribosome recycli 90.6 0.15 5.2E-06 58.6 4.2 27 79-105 103-129 (608)
399 1ukz_A Uridylate kinase; trans 90.6 0.18 6E-06 48.4 4.1 24 78-101 14-37 (203)
400 2z0h_A DTMP kinase, thymidylat 90.6 0.14 4.9E-06 48.4 3.3 21 81-101 2-22 (197)
401 3ozx_A RNAse L inhibitor; ATP 90.6 0.17 5.9E-06 57.2 4.5 26 79-104 25-50 (538)
402 3qf4_B Uncharacterized ABC tra 90.6 0.09 3.1E-06 60.1 2.3 23 81-103 383-405 (598)
403 2yl4_A ATP-binding cassette SU 90.6 0.086 2.9E-06 60.1 2.1 23 81-103 372-394 (595)
404 1vht_A Dephospho-COA kinase; s 90.6 0.16 5.4E-06 49.5 3.7 23 79-101 4-26 (218)
405 2cvh_A DNA repair and recombin 90.5 0.11 3.7E-06 50.0 2.5 23 79-101 20-42 (220)
406 3bk7_A ABC transporter ATP-bin 90.5 0.12 4.2E-06 59.3 3.3 27 78-104 116-142 (607)
407 2pbr_A DTMP kinase, thymidylat 90.5 0.15 5E-06 48.0 3.3 21 81-101 2-22 (195)
408 4a82_A Cystic fibrosis transme 90.5 0.081 2.8E-06 60.1 1.8 23 81-103 369-391 (578)
409 2ze6_A Isopentenyl transferase 90.4 0.13 4.4E-06 52.1 3.0 21 81-101 3-23 (253)
410 3qf4_A ABC transporter, ATP-bi 90.4 0.095 3.3E-06 59.8 2.2 24 81-104 371-394 (587)
411 1via_A Shikimate kinase; struc 90.4 0.12 4.3E-06 48.4 2.7 21 81-101 6-26 (175)
412 1qf9_A UMP/CMP kinase, protein 90.3 0.21 7.1E-06 46.8 4.2 23 79-101 6-28 (194)
413 2xb4_A Adenylate kinase; ATP-b 90.3 0.15 5.1E-06 50.3 3.3 22 80-101 1-22 (223)
414 3euj_A Chromosome partition pr 90.3 0.11 3.7E-06 58.3 2.5 24 80-103 30-53 (483)
415 1in4_A RUVB, holliday junction 90.1 0.12 3.9E-06 54.5 2.4 22 81-102 53-74 (334)
416 2p5t_B PEZT; postsegregational 90.0 0.15 5.1E-06 51.4 3.1 27 76-102 29-55 (253)
417 1n0w_A DNA repair protein RAD5 89.9 0.13 4.4E-06 50.4 2.5 24 79-102 24-47 (243)
418 2dpy_A FLII, flagellum-specifi 89.9 0.13 4.6E-06 56.7 2.8 25 79-103 157-181 (438)
419 3eie_A Vacuolar protein sortin 89.8 0.5 1.7E-05 49.2 6.9 24 79-102 51-74 (322)
420 3ozx_A RNAse L inhibitor; ATP 89.7 0.18 6.1E-06 57.1 3.8 26 81-106 296-321 (538)
421 1ak2_A Adenylate kinase isoenz 89.7 0.2 6.9E-06 49.5 3.7 24 78-101 15-38 (233)
422 1yqt_A RNAse L inhibitor; ATP- 89.7 0.21 7.1E-06 56.5 4.2 27 81-107 314-340 (538)
423 1ewq_A DNA mismatch repair pro 89.7 0.38 1.3E-05 56.8 6.6 23 81-103 578-600 (765)
424 3cwq_A Para family chromosome 89.6 0.18 6E-06 49.4 3.1 110 81-211 2-133 (209)
425 3be4_A Adenylate kinase; malar 89.5 0.19 6.6E-06 49.1 3.4 23 79-101 5-27 (217)
426 1e6c_A Shikimate kinase; phosp 89.5 0.18 6.2E-06 46.7 3.0 21 81-101 4-24 (173)
427 4f4c_A Multidrug resistance pr 89.4 0.1 3.5E-06 65.1 1.6 23 81-103 1107-1129(1321)
428 2vli_A Antibiotic resistance p 89.3 0.14 4.9E-06 47.9 2.2 23 79-101 5-27 (183)
429 3a4m_A L-seryl-tRNA(SEC) kinas 89.2 0.22 7.6E-06 50.4 3.7 23 79-101 4-26 (260)
430 3bk7_A ABC transporter ATP-bin 89.2 0.24 8.1E-06 57.0 4.2 27 81-107 384-410 (607)
431 2p65_A Hypothetical protein PF 89.1 0.16 5.4E-06 46.9 2.3 24 79-102 43-66 (187)
432 3sr0_A Adenylate kinase; phosp 89.1 0.22 7.4E-06 49.3 3.3 22 80-101 1-22 (206)
433 1xjc_A MOBB protein homolog; s 89.0 0.22 7.5E-06 48.1 3.3 23 80-102 5-27 (169)
434 1f2t_A RAD50 ABC-ATPase; DNA d 88.9 0.2 6.7E-06 46.8 2.8 20 81-100 25-44 (149)
435 3eph_A TRNA isopentenyltransfe 88.9 0.28 9.6E-06 53.8 4.4 59 80-140 3-70 (409)
436 3cf2_A TER ATPase, transitiona 88.9 1.3 4.5E-05 52.5 10.4 73 78-176 237-309 (806)
437 3bos_A Putative DNA replicatio 88.9 0.23 7.7E-06 48.0 3.3 23 79-101 52-74 (242)
438 2iyv_A Shikimate kinase, SK; t 88.8 0.22 7.4E-06 47.0 3.1 21 81-101 4-24 (184)
439 1m7g_A Adenylylsulfate kinase; 88.8 0.27 9.4E-06 47.7 3.9 24 79-102 25-48 (211)
440 3thx_A DNA mismatch repair pro 88.8 1.7 5.6E-05 52.5 11.3 19 81-99 664-682 (934)
441 3r20_A Cytidylate kinase; stru 88.7 0.24 8.1E-06 50.2 3.4 24 78-101 8-31 (233)
442 2zan_A Vacuolar protein sortin 88.6 1.1 3.7E-05 49.2 8.9 24 79-102 167-190 (444)
443 3foz_A TRNA delta(2)-isopenten 88.6 0.21 7.1E-06 53.0 3.0 60 79-140 10-78 (316)
444 1zuh_A Shikimate kinase; alpha 88.6 0.25 8.5E-06 45.9 3.2 22 80-101 8-29 (168)
445 3nwj_A ATSK2; P loop, shikimat 88.5 0.16 5.6E-06 51.7 2.1 22 80-101 49-70 (250)
446 3syl_A Protein CBBX; photosynt 88.3 0.35 1.2E-05 49.2 4.4 27 75-101 63-89 (309)
447 2w58_A DNAI, primosome compone 88.2 0.27 9.1E-06 47.1 3.3 22 80-101 55-76 (202)
448 1uj2_A Uridine-cytidine kinase 88.2 0.29 9.9E-06 49.1 3.7 25 77-101 20-44 (252)
449 3j16_B RLI1P; ribosome recycli 88.2 0.24 8.1E-06 57.0 3.4 25 82-106 381-405 (608)
450 1nlf_A Regulatory protein REPA 88.0 0.22 7.4E-06 50.7 2.6 22 80-101 31-52 (279)
451 2f6r_A COA synthase, bifunctio 87.9 0.31 1.1E-05 50.1 3.8 23 78-100 74-96 (281)
452 1ltq_A Polynucleotide kinase; 87.9 0.29 9.8E-06 50.0 3.5 22 80-101 3-24 (301)
453 1q3t_A Cytidylate kinase; nucl 87.8 0.33 1.1E-05 48.1 3.7 28 74-101 11-38 (236)
454 4f4c_A Multidrug resistance pr 87.7 0.24 8.3E-06 61.8 3.3 24 81-104 446-469 (1321)
455 4eaq_A DTMP kinase, thymidylat 87.7 0.37 1.3E-05 48.0 4.1 25 78-102 25-49 (229)
456 1azs_C GS-alpha; complex (lyas 87.7 0.64 2.2E-05 50.8 6.3 83 116-211 206-297 (402)
457 1svm_A Large T antigen; AAA+ f 87.7 0.28 9.7E-06 53.1 3.4 23 79-101 169-191 (377)
458 1njg_A DNA polymerase III subu 87.1 0.31 1.1E-05 46.3 3.1 22 80-101 46-67 (250)
459 2chg_A Replication factor C sm 86.9 0.33 1.1E-05 45.7 3.1 21 81-101 40-60 (226)
460 4aby_A DNA repair protein RECN 86.9 0.14 4.7E-06 55.0 0.4 20 81-100 62-81 (415)
461 2iw3_A Elongation factor 3A; a 86.9 0.2 6.7E-06 60.7 1.7 24 81-104 701-724 (986)
462 3g5u_A MCG1178, multidrug resi 86.6 0.26 8.9E-06 61.3 2.7 24 81-104 418-441 (1284)
463 2vhj_A Ntpase P4, P4; non- hyd 86.5 0.49 1.7E-05 50.5 4.4 21 81-101 125-145 (331)
464 3ake_A Cytidylate kinase; CMP 86.2 0.41 1.4E-05 45.6 3.3 21 81-101 4-24 (208)
465 4ag6_A VIRB4 ATPase, type IV s 86.1 0.32 1.1E-05 52.1 2.7 24 79-102 35-58 (392)
466 2qmh_A HPR kinase/phosphorylas 86.0 0.35 1.2E-05 48.2 2.8 25 79-103 34-58 (205)
467 2grj_A Dephospho-COA kinase; T 85.9 0.43 1.5E-05 46.6 3.3 23 79-101 12-34 (192)
468 2dr3_A UPF0273 protein PH0284; 85.9 0.4 1.4E-05 46.8 3.1 20 81-100 25-44 (247)
469 1sxj_E Activator 1 40 kDa subu 85.8 0.27 9.4E-06 51.1 2.0 20 82-101 39-58 (354)
470 2qby_A CDC6 homolog 1, cell di 85.7 0.39 1.3E-05 49.8 3.1 24 79-102 45-68 (386)
471 3ux8_A Excinuclease ABC, A sub 85.7 0.25 8.5E-06 57.1 1.7 20 81-100 350-369 (670)
472 3n70_A Transport activator; si 85.6 0.42 1.4E-05 43.7 2.9 24 79-102 24-47 (145)
473 3a8t_A Adenylate isopentenyltr 85.6 0.53 1.8E-05 50.4 4.1 56 80-137 41-105 (339)
474 3cr8_A Sulfate adenylyltranfer 85.5 0.29 9.9E-06 55.6 2.1 25 78-102 368-392 (552)
475 3umf_A Adenylate kinase; rossm 85.4 0.61 2.1E-05 46.6 4.2 25 77-101 27-51 (217)
476 1qhl_A Protein (cell division 85.4 0.12 4E-06 52.2 -1.0 22 82-103 30-51 (227)
477 3qks_A DNA double-strand break 85.4 0.43 1.5E-05 46.6 3.0 19 81-99 25-43 (203)
478 3d8b_A Fidgetin-like protein 1 85.4 1.3 4.3E-05 47.0 6.9 25 78-102 116-140 (357)
479 2ius_A DNA translocase FTSK; n 84.8 0.42 1.4E-05 53.9 3.0 22 80-101 168-189 (512)
480 2iw3_A Elongation factor 3A; a 84.8 0.37 1.3E-05 58.3 2.7 22 81-102 463-484 (986)
481 3hu3_A Transitional endoplasmi 84.6 1.3 4.6E-05 49.3 7.0 24 78-101 237-260 (489)
482 3crm_A TRNA delta(2)-isopenten 84.4 0.51 1.7E-05 50.1 3.3 23 80-102 6-28 (323)
483 3g5u_A MCG1178, multidrug resi 84.4 0.45 1.5E-05 59.2 3.3 24 81-104 1061-1084(1284)
484 1tue_A Replication protein E1; 84.3 0.41 1.4E-05 48.0 2.3 22 80-101 59-80 (212)
485 1ko7_A HPR kinase/phosphatase; 84.2 0.44 1.5E-05 50.4 2.7 25 79-103 144-168 (314)
486 2ocp_A DGK, deoxyguanosine kin 84.1 0.65 2.2E-05 46.0 3.8 24 79-102 2-25 (241)
487 4fcw_A Chaperone protein CLPB; 84.1 0.71 2.4E-05 46.9 4.1 23 80-102 48-70 (311)
488 3d3q_A TRNA delta(2)-isopenten 83.8 0.53 1.8E-05 50.4 3.1 23 80-102 8-30 (340)
489 1pzn_A RAD51, DNA repair and r 83.7 0.46 1.6E-05 50.6 2.6 24 80-103 132-155 (349)
490 1bif_A 6-phosphofructo-2-kinas 83.7 0.61 2.1E-05 51.4 3.7 25 77-101 37-61 (469)
491 3cf0_A Transitional endoplasmi 83.6 0.72 2.5E-05 47.5 3.9 24 79-102 49-72 (301)
492 1zcb_A G alpha I/13; GTP-bindi 83.3 0.68 2.3E-05 49.8 3.7 23 77-99 31-53 (362)
493 1l8q_A Chromosomal replication 83.3 0.56 1.9E-05 48.5 3.0 23 80-102 38-60 (324)
494 1tf7_A KAIC; homohexamer, hexa 83.3 0.47 1.6E-05 53.1 2.6 20 80-99 40-59 (525)
495 1ofh_A ATP-dependent HSL prote 83.2 0.58 2E-05 47.3 3.0 23 79-101 50-72 (310)
496 3co5_A Putative two-component 83.2 0.41 1.4E-05 43.8 1.7 23 80-102 28-50 (143)
497 1qvr_A CLPB protein; coiled co 83.1 0.79 2.7E-05 54.4 4.5 23 80-102 192-214 (854)
498 3u61_B DNA polymerase accessor 83.0 2.9 0.0001 42.8 8.3 22 81-102 50-71 (324)
499 3thx_B DNA mismatch repair pro 82.9 1.2 4.1E-05 53.6 5.9 21 81-101 675-695 (918)
500 1w1w_A Structural maintenance 82.8 0.5 1.7E-05 51.4 2.5 22 80-101 27-48 (430)
No 1
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.93 E-value=2.4e-25 Score=229.08 Aligned_cols=215 Identities=29% Similarity=0.487 Sum_probs=174.7
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
..++|+|+|.+|||||||+|+|++...+.++..+++|...........+..+.||||||+.+... ......+.+.+
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~----~~~~~~~~i~~ 110 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGY----VNHQALELIKG 110 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTE----ECHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCccc----chHHHHHHHHH
Confidence 47999999999999999999999998877777888888888888888999999999999987643 23566677777
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCCCCCCCCCCcchhhhhhhccHHHHHH
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPEGSSGYPFSYESYVTQCTDLVQQR 237 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~pde~~~~~~s~e~~i~q~~~~Lq~~ 237 (704)
++...++|+++||++++.......+..+++.+.+.++...++|+++|+||+|+.++++ ..+++|+++....+++.
T Consensus 111 ~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~-----~~~e~~~~~~~~~l~~~ 185 (262)
T 3def_A 111 FLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDE-----LSYETFSSKRSDSLLKT 185 (262)
T ss_dssp HTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTT-----CCHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCC-----ccHHHHHHhhhHHHHHH
Confidence 8776688999999988865543346689999999999888899999999999875443 56888998877889999
Q ss_pred HHHHhcccCc-----cchhhhhccCCccccCccCcccCCCccchHHHHHhhhhhhhhhhhHHhhhccccc
Q 005287 238 IHQAVSDARL-----ENQVLLVENHPQCRRNVKGEQILPNGQIWKSRFLLLCICTKVLGDANALLGFRDS 302 (704)
Q Consensus 238 I~q~~~d~~~-----~~pv~lVen~p~c~~N~~ge~vLP~~~~W~~~Ll~~c~s~ki~~eA~~~lk~~~~ 302 (704)
+.++.+.... ..|+.++++.+.|..|..|+.+||++++|++.|+... ..-+++..++++.+++.
T Consensus 186 i~~~~~~~~~~~~~~~~pv~~ve~~~~~~~n~~g~~~lp~~~~w~~~~~~~~-~~~~~~~~~~~~~~~~~ 254 (262)
T 3def_A 186 IRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEKALPNGEAWIPNLVKAI-TDVATNQRKAIHVDAAA 254 (262)
T ss_dssp HHHHHTCCHHHHHHHCCEEEECCCCTTCCBCTTSCBBCTTSCBSCC-CHHHH-HHHHTSCSCCEEC----
T ss_pred HHHHhCccccccccccCCEEEEeCCCCCCCCCCCCeECCCCCeeHHHHHHHH-HHHHhCCCCceeccHHH
Confidence 9998876553 3788899999999999999999999999999999874 55567777777666553
No 2
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.90 E-value=2.4e-23 Score=214.87 Aligned_cols=214 Identities=29% Similarity=0.494 Sum_probs=169.0
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
..++|+|+|.+|+|||||+|+|++.....++...++|.....+.....+..+.||||||+.+.... +....+.+.+
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~----~~~~~~~i~~ 113 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYI----NDMALNIIKS 113 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEE----CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccc----hHHHHHHHHH
Confidence 469999999999999999999999988777777888888888888889999999999999776422 2445556666
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCCCCCCCCCCcchhhhhhhccHHHHHH
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPEGSSGYPFSYESYVTQCTDLVQQR 237 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~pde~~~~~~s~e~~i~q~~~~Lq~~ 237 (704)
++...++|++|||++++..+....+..+++.+.+.+|...|.|+|+|+||+|+.++++ .++++|+++....+++.
T Consensus 114 ~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~-----~~~~~~~~~~~~~l~~~ 188 (270)
T 1h65_A 114 FLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDG-----LPYDEFFSKRSEALLQV 188 (270)
T ss_dssp HTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGG-----CCHHHHHHHHHHHHHHH
T ss_pred HhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCC-----CCHHHHHHHHHHHHHHH
Confidence 6655578999999988765443356788999999999888899999999999875543 36888988877888888
Q ss_pred HHHHhcccCcc----chhhhhccCCccccCccCcccCCCccchHHHHHhhhhhhhhhhhHHhhhcccc
Q 005287 238 IHQAVSDARLE----NQVLLVENHPQCRRNVKGEQILPNGQIWKSRFLLLCICTKVLGDANALLGFRD 301 (704)
Q Consensus 238 I~q~~~d~~~~----~pv~lVen~p~c~~N~~ge~vLP~~~~W~~~Ll~~c~s~ki~~eA~~~lk~~~ 301 (704)
+++.....+.. .|+.++++.+.|.++..++.++|+.+.|.+.|+..-.. .+..+.+.++-...
T Consensus 189 ~~~~~~~~~~~~~~~~p~~~v~~~~~~~~~~~~~~v~~~~~~w~~~Ll~~l~~-~~~~~~~~l~~d~~ 255 (270)
T 1h65_A 189 VRSGASLKKDAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTITE-VALNKSESIFVDKN 255 (270)
T ss_dssp HHHHTTCCTTSGGGCCCEEECCCCTTCCBCTTSCBBCTTSCBHHHHHHHHHHH-HHTSSSCCEECCHH
T ss_pred HHHhhhhhhhhhhccCCEEEEeCCCcccccCCCceECCCCCCcHHHHHHHHHH-HHhcCCCceecCHH
Confidence 87654432222 47889999999999999999999999999988866533 45566666655544
No 3
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.76 E-value=4.3e-18 Score=171.61 Aligned_cols=158 Identities=21% Similarity=0.265 Sum_probs=106.1
Q ss_pred CCCCCCeEEEEEeCCCCcHHHHHHHHhCCCCccccC-CCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHH
Q 005287 74 PDLDFSIRILVLGKTGVGKSATINSIFDQTKTETDA-FQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIM 152 (704)
Q Consensus 74 ~~~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~-~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il 152 (704)
......++|+|+|.+|||||||+|+|+|........ ..++|..+......+.+..+.||||||+.+..... ....
T Consensus 24 ~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~----~~~~ 99 (239)
T 3lxx_A 24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPN----AETS 99 (239)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----C----HHHH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCH----HHHH
Confidence 444567999999999999999999999988754432 22678888888888899999999999998875433 3333
Q ss_pred HHHHHHHhc--CCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCCCCCCCCCCcchhhhhhhc
Q 005287 153 LSVKKFIRR--SPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPEGSSGYPFSYESYVTQC 230 (704)
Q Consensus 153 ~~Ik~~ik~--~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~pde~~~~~~s~e~~i~q~ 230 (704)
+.+.+++.. ..+|++|+|++++..+. .+...++.+.+.|+...++|+++|+||+|.+.. ..+++++...
T Consensus 100 ~~~~~~~~~~~~~~~~~l~v~d~~~~~~--~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~-------~~~~~~i~~~ 170 (239)
T 3lxx_A 100 KEIIRCILLTSPGPHALLLVVPLGRYTE--EEHKATEKILKMFGERARSFMILIFTRKDDLGD-------TNLHDYLREA 170 (239)
T ss_dssp HHHHHHHHHTTTCCSEEEEEEETTCCSS--HHHHHHHHHHHHHHHHHGGGEEEEEECGGGC-------------------
T ss_pred HHHHHHHHhcCCCCcEEEEEeeCCCCCH--HHHHHHHHHHHHhhhhccceEEEEEeCCccCCc-------ccHHHHHHhc
Confidence 444444432 36899999988875443 567888899888887778899999999998743 2356777766
Q ss_pred cHHHHHHHHHHhcc
Q 005287 231 TDLVQQRIHQAVSD 244 (704)
Q Consensus 231 ~~~Lq~~I~q~~~d 244 (704)
...+++.+.+|...
T Consensus 171 ~~~l~~l~~~~~~~ 184 (239)
T 3lxx_A 171 PEDIQDLMDIFGDR 184 (239)
T ss_dssp CHHHHHHHHHHSSS
T ss_pred hHHHHHHHHHcCCE
Confidence 66788888888654
No 4
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.72 E-value=5.2e-17 Score=165.99 Aligned_cols=156 Identities=19% Similarity=0.262 Sum_probs=112.4
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCcccc-CCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETD-AFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSV 155 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs-~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~I 155 (704)
...++|+|+|.||||||||+|+|+|...+.++ ...++|..+......+.+.++.||||||+.+..... .+.....+
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~---~~~~~~~i 95 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSK---TDPGCEER 95 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHH---HSTTSHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCc---HHHHHHHH
Confidence 45799999999999999999999999988764 334688888888888999999999999998764321 12233334
Q ss_pred HHHH--hcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccccc-ccEEEEEEccCCCCCCCCCCCCcchhhhhhhc-c
Q 005287 156 KKFI--RRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIW-FNTILVMTHSSSTLPEGSSGYPFSYESYVTQC-T 231 (704)
Q Consensus 156 k~~i--k~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~-k~vIVVLTK~D~l~pde~~~~~~s~e~~i~q~-~ 231 (704)
.+++ ....+|++|+|++++..+ ..+..+++.+.+.||...+ .++|+|.||.|+.. .++++++.+. .
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~--~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~--------~~~~~~l~~~~~ 165 (247)
T 3lxw_A 96 GHCYLLSAPGPHALLLVTQLGRFT--AQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAG--------GSLHDYVSNTEN 165 (247)
T ss_dssp HHHHHHHTTCCSEEEEEEETTBCC--HHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT--------CCHHHHHHHCCC
T ss_pred HHHHHhcCCCCCEEEEEEeCCCCC--HHHHHHHHHHHHHhChhhhccEEEEEEchHhcCC--------CCHHHHHhhccc
Confidence 4443 224789999999887543 3577889999999987754 57888889998752 3467788653 4
Q ss_pred HHHHHHHHHHhccc
Q 005287 232 DLVQQRIHQAVSDA 245 (704)
Q Consensus 232 ~~Lq~~I~q~~~d~ 245 (704)
..+++.+.+|.+.+
T Consensus 166 ~~l~~l~~~~g~~~ 179 (247)
T 3lxw_A 166 RALRELVAECGGRV 179 (247)
T ss_dssp HHHHHHHHHTTTCE
T ss_pred HHHHHHHHHcCCeE
Confidence 67888888886653
No 5
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.63 E-value=4.6e-15 Score=151.04 Aligned_cols=153 Identities=22% Similarity=0.280 Sum_probs=108.3
Q ss_pred CCCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCC-ccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 76 LDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQP-ATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 76 ~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~-tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
....++|+|+|.+|||||||+|+|++...+.++..+. +|..+......+.+.++.||||||+.+..... ..+.+.
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~----~~~~~~ 94 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHC----EALYKE 94 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCC----HHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCH----HHHHHH
Confidence 3457999999999999999999999998777653333 77788877788899999999999998764322 233323
Q ss_pred HHHHHh--cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEE-ccCCCCCCCCCCCCcchhhhhhhc-
Q 005287 155 VKKFIR--RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMT-HSSSTLPEGSSGYPFSYESYVTQC- 230 (704)
Q Consensus 155 Ik~~ik--~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLT-K~D~l~pde~~~~~~s~e~~i~q~- 230 (704)
+.+++. ...+|++++|++++... ..+..+++.+.+.|+.....|.|+|+| |+|+.. ..+..++...
T Consensus 95 i~~~~~~~~~~~d~il~V~d~~~~~--~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~--------~~~~~~i~~~~ 164 (260)
T 2xtp_A 95 VQRCYLLSAPGPHVLLLVTQLGRYT--SQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG--------GSLMDYMHDSD 164 (260)
T ss_dssp HHHHHHHHTTCCSEEEEEEETTCCC--HHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT--------CCHHHHHHHCC
T ss_pred HHHHHHhcCCCCcEEEEEEeCCCCC--HHHHHHHHHHHHHhCchhhccEEEEEEcccccCC--------ccHHHHHHhcc
Confidence 332221 13789999998887532 245667888999988877789999999 999862 1245555432
Q ss_pred cHHHHHHHHHHh
Q 005287 231 TDLVQQRIHQAV 242 (704)
Q Consensus 231 ~~~Lq~~I~q~~ 242 (704)
...+++.+.++.
T Consensus 165 ~~~~~~~~~~~~ 176 (260)
T 2xtp_A 165 NKALSKLVAACG 176 (260)
T ss_dssp CHHHHHHHHHTT
T ss_pred hHHHHHHHHHhC
Confidence 244555555553
No 6
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.59 E-value=5.3e-15 Score=152.88 Aligned_cols=129 Identities=21% Similarity=0.315 Sum_probs=79.2
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccC-------CCCccceEEEEEeeEcCe--EEEEEECCCCCCcccchhhh
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDA-------FQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKR 147 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~-------~~~tT~~~~~~~~~~~G~--~v~LIDTPGl~d~~~~~~~~ 147 (704)
++.++|+|+|.+|+|||||+|+|++...+.... .+..+.+........+|. ++.||||||+++..... ..
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~-~~ 84 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNS-NC 84 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCT-TT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccch-hh
Confidence 467999999999999999999999998776642 222233444444445554 89999999998663321 11
Q ss_pred hHHHH----HHHHHHHh-----------cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 148 NRKIM----LSVKKFIR-----------RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 148 n~~il----~~Ik~~ik-----------~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
...+. ..+..++. ..++|+++|++..........+..+++.+.. ..|+|+|+||+|++.
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~------~~pvi~V~nK~D~~~ 158 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTLT 158 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT------TSCEEEEESSGGGSC
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc------cCCEEEEEeccCCCC
Confidence 12221 22233332 2358899999765543333345555655544 489999999999874
No 7
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.58 E-value=3.4e-16 Score=172.58 Aligned_cols=195 Identities=14% Similarity=0.109 Sum_probs=116.2
Q ss_pred cchhhHHHHHHhhcCCCCchHHHHHHHHHhh--------hcccccccchhhhhhcccchhHHHHhhccccC---------
Q 005287 9 EDLQVKFLRLLQRFGQSQDNILAVKVLYRLH--------LATLIRAGESDMKMVNLRSDRTRAIAREQEAT--------- 71 (704)
Q Consensus 9 ~~~rvk~lrl~~R~G~s~ed~~VaqvL~rl~--------lae~~~~~~~~~~~~~lg~d~a~~ia~~~~~~--------- 71 (704)
+.+++.++.++.+.|+++.|..+++.|++.+ |++..........++.+++.....+++.++..
T Consensus 81 ~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv~~L~~~i~ 160 (436)
T 2hjg_A 81 DEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVA 160 (436)
T ss_dssp HHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-----CCCSSGGGSSCCCEECBTTTTBTHHHHHHHHH
T ss_pred HhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchhhHHHHHHcCCCCeEEEeCcCCCChHHHHHHHH
Confidence 3455556666777888988888999887654 44433222222233444443322223222211
Q ss_pred -------CCCCCCCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccch
Q 005287 72 -------GIPDLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRN 144 (704)
Q Consensus 72 -------~~~~~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~ 144 (704)
........++|+++|.+|||||||+|+|+|.....++..+++|.+........+|..+.||||||+.+.....
T Consensus 161 ~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~ 240 (436)
T 2hjg_A 161 EHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVY 240 (436)
T ss_dssp HTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBC
T ss_pred HhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCcccc
Confidence 0112345689999999999999999999999988888888899988877788899999999999997653211
Q ss_pred hh-hhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 145 VK-RNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 145 ~~-~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
.. ........+ .+++ .+|++++|+++.... ..++..++..+.+ ..+++|+|+||+|+..
T Consensus 241 ~~~e~~~~~~~~-~~~~--~ad~~llv~D~~~~~-s~~~~~~~~~~~~-----~~~~iiiv~NK~Dl~~ 300 (436)
T 2hjg_A 241 ETTEKYSVLRAL-KAID--RSEVVAVVLDGEEGI-IEQDKRIAGYAHE-----AGKAVVIVVNKWDAVD 300 (436)
T ss_dssp CCCSHHHHHHHH-HHHH--HCSEEEEEEETTTCC-CHHHHHHHHHHHH-----TTCEEEEEEECGGGSC
T ss_pred chHHHHHHHHHH-HHHH--hCCEEEEEEcCCcCC-cHHHHHHHHHHHH-----cCCcEEEEEECccCCC
Confidence 00 111122222 2333 569999998775432 1244455555443 2589999999999874
No 8
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.55 E-value=1.1e-15 Score=169.49 Aligned_cols=194 Identities=14% Similarity=0.109 Sum_probs=117.4
Q ss_pred chhhHHHHHHhhcCCCCchHHHHHHHHHhh--------hcccccccchhhhhhcccchhHHHHhhcccc-----------
Q 005287 10 DLQVKFLRLLQRFGQSQDNILAVKVLYRLH--------LATLIRAGESDMKMVNLRSDRTRAIAREQEA----------- 70 (704)
Q Consensus 10 ~~rvk~lrl~~R~G~s~ed~~VaqvL~rl~--------lae~~~~~~~~~~~~~lg~d~a~~ia~~~~~----------- 70 (704)
.+++.++.++.+.|+++.+..+++.|++.+ +++..........++.+++.....+++.+..
T Consensus 102 ~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~~~~~e~~~lg~~~~~~iSA~~g~gv~~L~~~i~~ 181 (456)
T 4dcu_A 102 EADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAE 181 (456)
T ss_dssp HCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---------CCSGGGSSSSEEECCTTTCTTHHHHHHHHHT
T ss_pred hCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhhhhHHHHHHcCCCceEEeecccccchHHHHHHHHh
Confidence 344555666777888888989999887654 3333322222233344443322222222211
Q ss_pred -----CCCCCCCCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchh
Q 005287 71 -----TGIPDLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNV 145 (704)
Q Consensus 71 -----~~~~~~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~ 145 (704)
.........++|+++|.+|||||||+|+|++.+.+.++..+++|.+........++.++.||||||+.+......
T Consensus 182 ~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~ 261 (456)
T 4dcu_A 182 HFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYE 261 (456)
T ss_dssp TGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCC
T ss_pred hcccccccccccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccch
Confidence 111233467899999999999999999999998888888888898877777778999999999999976532110
Q ss_pred h-hhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 146 K-RNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 146 ~-~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
. ........+ .+++ .+|++++|++....- ...+..++..+.+. .+|+|+|+||+|+..
T Consensus 262 ~~e~~~~~~~~-~~~~--~ad~~llviD~~~~~-~~~~~~~~~~~~~~-----~~~~ilv~NK~Dl~~ 320 (456)
T 4dcu_A 262 TTEKYSVLRAL-KAID--RSEVVAVVLDGEEGI-IEQDKRIAGYAHEA-----GKAVVIVVNKWDAVD 320 (456)
T ss_dssp CCSHHHHHHHH-HHHH--HCSEEEEEEETTTCC-CHHHHHHHHHHHHT-----TCEEEEEEECGGGSC
T ss_pred HHHHHHHHHHH-HHHh--hCCEEEEEEeCCCCc-CHHHHHHHHHHHHc-----CCCEEEEEEChhcCC
Confidence 0 111112221 2343 569999997765422 23455666666552 489999999999874
No 9
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.54 E-value=2.1e-14 Score=141.38 Aligned_cols=129 Identities=12% Similarity=0.073 Sum_probs=90.8
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCC-CccccCCCCccceEEEEEee-EcCeEEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQT-KTETDAFQPATDCIREVKGS-VNGIKVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~-~a~vs~~~~tT~~~~~~~~~-~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
...++|+|+|.+|||||||+|+|++.. .+.++..+++|......... ..+..+.||||||+.+..... ...+.+...
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~-~~~~~~~~~ 105 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPG-AAKAHWEQL 105 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCS-THHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCCh-hhHHHHHHH
Confidence 357899999999999999999999987 45667777888887766654 567899999999998764332 222233333
Q ss_pred HHHHHhcC-CCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 155 VKKFIRRS-PPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 155 Ik~~ik~~-~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
+..++... .+|+++||++....- ...+..+++.+.. ...|+++|+||+|+..
T Consensus 106 ~~~~~~~~~~~d~vi~v~d~~~~~-~~~~~~~~~~l~~-----~~~p~i~v~nK~Dl~~ 158 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMILMMDARRPL-TELDRRMIEWFAP-----TGKPIHSLLTKCDKLT 158 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCC-CHHHHHHHHHHGG-----GCCCEEEEEECGGGSC
T ss_pred HHHHHhcCcCcCEEEEEEeCCCCC-CHHHHHHHHHHHh-----cCCCEEEEEeccccCC
Confidence 44455432 468899998765421 1234455555544 2579999999999873
No 10
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.53 E-value=6.3e-14 Score=147.76 Aligned_cols=126 Identities=16% Similarity=0.134 Sum_probs=91.8
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
...+|+|+|+||||||||+|+|+|...+.++..+++|++.........+.++.|+||||+.+... ..++.+......
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~---~l~~~~~~~~~~ 82 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMD---ALGEFMDQEVYE 82 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCS---HHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhh---HHHHHHHHHHHH
Confidence 34689999999999999999999999888877778888766666667889999999999987532 223334444445
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
+++ .+|++++|++++..- ...+..+++.+.+.. ...|+|+|+||+|+..
T Consensus 83 ~l~--~ad~il~VvD~~~~~-~~~~~~i~~~l~~~~---~~~p~ilV~NK~Dl~~ 131 (301)
T 1wf3_A 83 ALA--DVNAVVWVVDLRHPP-TPEDELVARALKPLV---GKVPILLVGNKLDAAK 131 (301)
T ss_dssp HTS--SCSEEEEEEETTSCC-CHHHHHHHHHHGGGT---TTSCEEEEEECGGGCS
T ss_pred HHh--cCCEEEEEEECCCCC-ChHHHHHHHHHHhhc---CCCCEEEEEECcccCC
Confidence 553 689999998876431 123444445554431 1479999999999863
No 11
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.53 E-value=4.7e-14 Score=148.81 Aligned_cols=128 Identities=15% Similarity=0.159 Sum_probs=95.8
Q ss_pred CCCCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEc-CeEEEEEECCCCCCcccchhhhhHHHHH
Q 005287 75 DLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVN-GIKVTFIDTPGFLPSCVRNVKRNRKIML 153 (704)
Q Consensus 75 ~~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~-G~~v~LIDTPGl~d~~~~~~~~n~~il~ 153 (704)
.......|+++|.+|||||||+|+|+|...+.++..+++|+.......... +.+++||||||+.+..... ..++.+..
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~-~l~~~~~~ 84 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSD-VLGHSMVE 84 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTC-HHHHHHHH
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccch-hHHHHHHH
Confidence 344567999999999999999999999998888888889988887777778 9999999999998764212 34455555
Q ss_pred HHHHHHhcCCCCEEEEEEeccCccCCCCcHHH-HHHHHHHhcccccccEEEEEEccCCC
Q 005287 154 SVKKFIRRSPPDIVLYFERLDLISMGFSDFPL-LKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 154 ~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~l-Lk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
....++. .+|++++|++++.... ..+..+ ++.+.. ...|+++|+||+|+.
T Consensus 85 ~~~~~l~--~aD~il~VvD~~~~~~-~~~~~~~~~~l~~-----~~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 85 IAKQSLE--EADVILFMIDATEGWR-PRDEEIYQNFIKP-----LNKPVIVVINKIDKI 135 (308)
T ss_dssp HHHHHHH--HCSEEEEEEETTTBSC-HHHHHHHHHHTGG-----GCCCEEEEEECGGGS
T ss_pred HHHHHhh--cCCEEEEEEeCCCCCC-chhHHHHHHHHHh-----cCCCEEEEEECccCC
Confidence 5556665 5799999988764321 233333 444433 257999999999987
No 12
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.49 E-value=5e-13 Score=127.70 Aligned_cols=126 Identities=14% Similarity=0.182 Sum_probs=88.0
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
...+|+|+|.+|||||||+|.|++.....++..+++|.+.......+++.++.++||||+.+.... .....+ .....
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~-~~~~~ 79 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDE--VERIGI-ERAWQ 79 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSH--HHHHHH-HHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhH--HHHHHH-HHHHH
Confidence 357999999999999999999999876666667778887777777788999999999999764211 111111 11112
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
+++ .+|++++|++.+.... ..+..++..+.+... ...|+|+|+||+|+.
T Consensus 80 ~~~--~ad~~i~v~D~~~~~s-~~~~~~~~~~~~~~~--~~~p~ilv~NK~Dl~ 128 (172)
T 2gj8_A 80 EIE--QADRVLFMVDGTTTDA-VDPAEIWPEFIARLP--AKLPITVVRNKADIT 128 (172)
T ss_dssp HHH--TCSEEEEEEETTTCCC-CSHHHHCHHHHHHSC--TTCCEEEEEECHHHH
T ss_pred HHH--hCCEEEEEEECCCCCC-HHHHHHHHHHHHhcc--cCCCEEEEEECccCC
Confidence 333 6799999988764332 235555555655432 247999999999985
No 13
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.48 E-value=1.1e-14 Score=160.70 Aligned_cols=196 Identities=16% Similarity=0.186 Sum_probs=115.6
Q ss_pred ccchhhHHHHHHhhcCCCCchHHHHHHHHHhh--------hcccccc-cchh-hhhhcccchhHHHHhhcccc-------
Q 005287 8 IEDLQVKFLRLLQRFGQSQDNILAVKVLYRLH--------LATLIRA-GESD-MKMVNLRSDRTRAIAREQEA------- 70 (704)
Q Consensus 8 i~~~rvk~lrl~~R~G~s~ed~~VaqvL~rl~--------lae~~~~-~~~~-~~~~~lg~d~a~~ia~~~~~------- 70 (704)
++.+++.++.++.+.|++..|..++++|++.+ |++.... .... ..++.+++.....+++.++.
T Consensus 79 ~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv~~L~~ 158 (439)
T 1mky_A 79 IREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINLDTMLE 158 (439)
T ss_dssp HTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHHHHHTHHHHGGGSSCSCEECBTTTTBSHHHHHH
T ss_pred HHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHHhcCCCCEEEEeccCCCCHHHHHH
Confidence 34556666777788889988888999988765 4443322 1111 23444444222222222211
Q ss_pred --------CC-C--C--CCCCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCC
Q 005287 71 --------TG-I--P--DLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGF 137 (704)
Q Consensus 71 --------~~-~--~--~~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl 137 (704)
.. . . .....++|+|+|++|||||||+|+|+|.....++..+++|++.......++|..+.++||||+
T Consensus 159 ~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~ 238 (439)
T 1mky_A 159 TIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGL 238 (439)
T ss_dssp HHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC
T ss_pred HHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCC
Confidence 01 0 1 133568999999999999999999999998888888899998887888889999999999999
Q ss_pred CCcccch-hh-hhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 138 LPSCVRN-VK-RNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 138 ~d~~~~~-~~-~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
....... .. ....... ...++. .+|++++|++..... ...+..+...+... .+++++|+||+|+..
T Consensus 239 ~~~~~~~~~~~e~~~~~~-~~~~i~--~ad~vllv~d~~~~~-~~~~~~i~~~l~~~-----~~~~ilv~NK~Dl~~ 306 (439)
T 1mky_A 239 RRKSRVEPRTVEKYSNYR-VVDSIE--KADVVVIVLDATQGI-TRQDQRMAGLMERR-----GRASVVVFNKWDLVV 306 (439)
T ss_dssp -----------CCSCCHH-HHHHHH--HCSEEEEEEETTTCC-CHHHHHHHHHHHHT-----TCEEEEEEECGGGST
T ss_pred ccccccchhhHHHHHHHH-HHHHHh--hCCEEEEEEeCCCCC-CHHHHHHHHHHHHc-----CCCEEEEEECccCCC
Confidence 5432100 00 0000011 112333 469999997665321 12344444444432 589999999999873
No 14
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.47 E-value=2.4e-13 Score=130.49 Aligned_cols=126 Identities=17% Similarity=0.203 Sum_probs=77.5
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCC-CccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQT-KTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSV 155 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~-~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~I 155 (704)
...++|+|+|.+|||||||+|+|++.. ...+....++|.....+.. +.++.+|||||+.+..... ..........
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~l~Dt~G~~~~~~~~-~~~~~~~~~~ 96 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII---NDELHFVDVPGYGFAKVSK-SEREAWGRMI 96 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE---TTTEEEEECCCBCCCSSCH-HHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE---CCcEEEEECCCCCccccCH-HHHHHHHHHH
Confidence 356899999999999999999999986 4444555666776665443 3479999999998764332 1122222333
Q ss_pred HHHHhcC-CCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 156 KKFIRRS-PPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 156 k~~ik~~-~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
..+++.. .+|++++|+++.... ...+..+++.+.. ...|+++|+||+|+..
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~-----~~~p~i~v~nK~Dl~~ 148 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAP-SNDDVQMYEFLKY-----YGIPVIVIATKADKIP 148 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCC-CHHHHHHHHHHHH-----TTCCEEEEEECGGGSC
T ss_pred HHHHhhhhcCCEEEEEEECCCCC-CHHHHHHHHHHHH-----cCCCEEEEEECcccCC
Confidence 3444322 458999998765432 1234445555554 2479999999999874
No 15
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.46 E-value=4.3e-13 Score=128.00 Aligned_cols=126 Identities=18% Similarity=0.225 Sum_probs=84.8
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
...++|+|+|.+|||||||+|+|++.....++...++|....... .+.++.++||||+....... ...........
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~---~~~~~~i~Dt~G~~~~~~~~-~~~~~~~~~~~ 96 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYL---VNSKYYFVDLPGYGYAKVSK-KERMLWKRLVE 96 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEE---ETTTEEEEECCCBSSSCCCH-HHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEE---ECCcEEEEECCCCccccCCh-hhHHHHHHHHH
Confidence 456899999999999999999999998666666666776665443 25578999999987653322 11122222233
Q ss_pred HHHhc-CCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 157 KFIRR-SPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 157 ~~ik~-~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
.+++. ..+|++++|++..... ...+..+++.+... ..|+++|+||+|+..
T Consensus 97 ~~~~~~~~~~~vi~v~d~~~~~-~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~~ 147 (195)
T 3pqc_A 97 DYFKNRWSLQMVFLLVDGRIPP-QDSDLMMVEWMKSL-----NIPFTIVLTKMDKVK 147 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCC-CHHHHHHHHHHHHT-----TCCEEEEEECGGGSC
T ss_pred HHHhcCcCceEEEEEecCCCCC-CHHHHHHHHHHHHc-----CCCEEEEEEChhcCC
Confidence 34432 2568999997765332 12344555555543 489999999999873
No 16
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.46 E-value=3.5e-13 Score=139.76 Aligned_cols=123 Identities=15% Similarity=0.193 Sum_probs=89.9
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccch--hhhhHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRN--VKRNRKIMLSV 155 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~--~~~n~~il~~I 155 (704)
..++|+|+|.+|||||||+|+|+|.. +.++..+++|.+.........+.++.||||||+.+..... ....+.+ .
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~-~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i---~ 77 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQI---A 77 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTC-EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHH---H
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHH---H
Confidence 35899999999999999999999987 6677778889988888888889999999999998754210 0111122 2
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 156 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 156 k~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
+.++....+|++++|++..... ....+...+.+. ..|+|+|+||+|+..
T Consensus 78 ~~~~~~~~~d~ii~VvD~~~~~---~~~~~~~~l~~~-----~~p~ivv~NK~Dl~~ 126 (274)
T 3i8s_A 78 CHYILSGDADLLINVVDASNLE---RNLYLTLQLLEL-----GIPCIVALNMLDIAE 126 (274)
T ss_dssp HHHHHHTCCSEEEEEEEGGGHH---HHHHHHHHHHHH-----TCCEEEEEECHHHHH
T ss_pred HHHHhhcCCCEEEEEecCCChH---HHHHHHHHHHhc-----CCCEEEEEECccchh
Confidence 2334335789999998766532 233444555544 589999999999864
No 17
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.43 E-value=9.6e-13 Score=121.75 Aligned_cols=121 Identities=17% Similarity=0.236 Sum_probs=78.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 159 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~i 159 (704)
.+|+|+|.+|||||||+|+|++.....+...+++|.+.........+..+.++||||...... ...........++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----~~~~~~~~~~~~~ 77 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDK----WEKKIQEKVDRAL 77 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSS----CCHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccc----hHHHHHHHHHHHH
Confidence 489999999999999999999987655556667777777777778899999999999976421 1122223333344
Q ss_pred hcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 160 RRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 160 k~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
+ .+|++++|++..... ...+..+.+.+.+. ..|+++|+||+|+..
T Consensus 78 ~--~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~ 122 (161)
T 2dyk_A 78 E--DAEVVLFAVDGRAEL-TQADYEVAEYLRRK-----GKPVILVATKVDDPK 122 (161)
T ss_dssp T--TCSEEEEEEESSSCC-CHHHHHHHHHHHHH-----TCCEEEEEECCCSGG
T ss_pred H--hCCEEEEEEECCCcc-cHhHHHHHHHHHhc-----CCCEEEEEECccccc
Confidence 3 679999998776431 11233445555442 479999999999873
No 18
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.43 E-value=5.1e-13 Score=147.36 Aligned_cols=121 Identities=21% Similarity=0.239 Sum_probs=78.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHh
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 160 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik 160 (704)
+|+|||+||||||||+|.|++...+.++..+++|++.......+.|.++.||||||+...... .....+......+++
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~--~~~~~~~~~~~~~~~ 80 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQD--IISQKMKEVTLNMIR 80 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGG--CCCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccc--hHHHHHHHHHHHHHH
Confidence 799999999999999999999988888888899999888888899999999999999753211 112334344444554
Q ss_pred cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 161 RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 161 ~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
.+|++++|++.... ....+..+.+.+.+. .+|+++|+||+|+.
T Consensus 81 --~ad~il~V~D~~~~-~~~~d~~i~~~l~~~-----~~p~ilv~NK~D~~ 123 (439)
T 1mky_A 81 --EADLVLFVVDGKRG-ITKEDESLADFLRKS-----TVDTILVANKAENL 123 (439)
T ss_dssp --TCSEEEEEEETTTC-CCHHHHHHHHHHHHH-----TCCEEEEEESCCSH
T ss_pred --hCCEEEEEEECCCC-CCHHHHHHHHHHHHc-----CCCEEEEEeCCCCc
Confidence 78999999876432 112344566656543 48999999999964
No 19
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.42 E-value=5.6e-13 Score=137.20 Aligned_cols=122 Identities=11% Similarity=0.124 Sum_probs=86.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchh--hhhHHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNV--KRNRKIMLSVKK 157 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~--~~n~~il~~Ik~ 157 (704)
.+|+|+|.+|||||||+|+|+|.. ..++..+++|.+.........+..+.||||||+.+...... ...+.+ ...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~-~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i---~~~ 77 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN-QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQI---AAQ 77 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS-EEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHH---HHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHH---HHH
Confidence 379999999999999999999986 55677788898888888888999999999999987542100 011112 223
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 213 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~p 213 (704)
++....+|++++|++.+... ....+...+.+ ...|+++|+||+|....
T Consensus 78 ~~~~~~~d~vi~VvDas~~~---~~~~l~~~l~~-----~~~pvilv~NK~Dl~~~ 125 (256)
T 3iby_A 78 SVIDLEYDCIINVIDACHLE---RHLYLTSQLFE-----LGKPVVVALNMMDIAEH 125 (256)
T ss_dssp HHHHSCCSEEEEEEEGGGHH---HHHHHHHHHTT-----SCSCEEEEEECHHHHHH
T ss_pred HHhhCCCCEEEEEeeCCCch---hHHHHHHHHHH-----cCCCEEEEEEChhcCCc
Confidence 44335789999998776532 12233333332 25899999999998743
No 20
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.42 E-value=2.8e-12 Score=127.74 Aligned_cols=131 Identities=16% Similarity=0.157 Sum_probs=82.3
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
...++|+|+|.+|||||||+|+|++.... +...+.+|...........+..+.||||||+.+..... ........+.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~--~~~~~~~~~~ 103 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVD-VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFEN--RNTIEMTTIT 103 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEE-EECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGG--CCHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccch--hhhHHHHHHH
Confidence 45789999999999999999999998754 45556677777776667788999999999997643211 1111112233
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCCC
Q 005287 157 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 213 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~p 213 (704)
.+. ..+|++++|++++.... .........+..........|+++|+||+|+...
T Consensus 104 ~~~--~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 157 (228)
T 2qu8_A 104 ALA--HINGVILFIIDISEQCG-LTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNM 157 (228)
T ss_dssp HHH--TSSEEEEEEEETTCTTS-SCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC-
T ss_pred Hhh--ccccEEEEEEecccccC-cchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCc
Confidence 332 35689999988764321 1212223333333222125799999999998743
No 21
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.36 E-value=7.3e-13 Score=148.25 Aligned_cols=125 Identities=14% Similarity=0.151 Sum_probs=64.6
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
..++|+|+|.||||||||+|+|++.+.+.++..+++|++.......++|.++.||||||+.+.... .+.. .+.+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~----ve~~--gi~~ 305 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEE----IEHE--GIRR 305 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhH----HHHH--HHHH
Confidence 358999999999999999999999988888888899999888888889999999999999764210 0110 0111
Q ss_pred HHh-cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 158 FIR-RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 158 ~ik-~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
... ...+|++++|++.+.... .........+.+.+. ..|+|+|+||+|+..
T Consensus 306 ~~~~~~~aD~vl~VvD~s~~~s-~~~~~~~~~~l~~l~---~~piIvV~NK~Dl~~ 357 (476)
T 3gee_A 306 SRMKMAEADLILYLLDLGTERL-DDELTEIRELKAAHP---AAKFLTVANKLDRAA 357 (476)
T ss_dssp --CCCSSCSEEEEEEETTTCSS-GGGHHHHHHHHHHCT---TSEEEEEEECTTSCT
T ss_pred HHhhcccCCEEEEEEECCCCcc-hhhhHHHHHHHHhcC---CCCEEEEEECcCCCC
Confidence 111 137899999988765432 111112222222222 479999999999874
No 22
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.36 E-value=2.6e-12 Score=132.30 Aligned_cols=121 Identities=19% Similarity=0.257 Sum_probs=86.2
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
..++|+|+|.+|||||||+|+|+|... .++..+++|.+.........+..+.|+||||........ ..+.+. ..
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~-~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~--~~e~v~---~~ 77 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQ-YVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSS--IDEKIA---RD 77 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCE-EEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSS--HHHHHH---HH
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCC--HHHHHH---HH
Confidence 458999999999999999999999774 356677888888888888889999999999997653211 112221 23
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
++....+|++++|++.+... ..+..+..... ...|+++|+||+|+..
T Consensus 78 ~~~~~~~d~ii~V~D~t~~~------~~~~~~~~l~~--~~~pvilv~NK~Dl~~ 124 (258)
T 3a1s_A 78 YLLKGDADLVILVADSVNPE------QSLYLLLEILE--MEKKVILAMTAIDEAK 124 (258)
T ss_dssp HHHHSCCSEEEEEEETTSCH------HHHHHHHHHHT--TTCCEEEEEECHHHHH
T ss_pred HHhhcCCCEEEEEeCCCchh------hHHHHHHHHHh--cCCCEEEEEECcCCCC
Confidence 44335789999998765432 12223333321 2589999999999864
No 23
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.36 E-value=5.9e-13 Score=146.96 Aligned_cols=196 Identities=17% Similarity=0.143 Sum_probs=113.7
Q ss_pred CCCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCe-EEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 76 LDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI-KVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 76 ~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~-~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
....++|+|+|.+|+|||||+|+|++.....++..+++|.+.........+. ++.||||||+.+......... +.
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~----~~ 106 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRV----EK 106 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCH----HH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHH----HH
Confidence 4457899999999999999999999998777777778888887777777766 999999999987543210111 12
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCCCCCCC---------CCC-cchh
Q 005287 155 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPEGSS---------GYP-FSYE 224 (704)
Q Consensus 155 Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~pde~~---------~~~-~s~e 224 (704)
...++. .+|++++|++. +....+..++..+.+. ..|+|+|+||+|+....... +.+ ....
T Consensus 107 ~~~~l~--~aD~vllVvD~---~~~~~~~~~l~~l~~~-----~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~~v~~vS 176 (423)
T 3qq5_A 107 ARRVFY--RADCGILVTDS---APTPYEDDVVNLFKEM-----EIPFVVVVNKIDVLGEKAEELKGLYESRYEAKVLLVS 176 (423)
T ss_dssp HHHHHT--SCSEEEEECSS---SCCHHHHHHHHHHHHT-----TCCEEEECCCCTTTTCCCTHHHHHSSCCTTCCCCCCS
T ss_pred HHHHHh--cCCEEEEEEeC---CChHHHHHHHHHHHhc-----CCCEEEEEeCcCCCCccHHHHHHHHHHHcCCCEEEEE
Confidence 233443 67999999765 2222345566666554 58999999999987654310 000 0000
Q ss_pred hhhhhccHHHHHHHHHHhcccCccch---------hhhhccCCccccCccCcccCCCccchHHHHHhhhhh
Q 005287 225 SYVTQCTDLVQQRIHQAVSDARLENQ---------VLLVENHPQCRRNVKGEQILPNGQIWKSRFLLLCIC 286 (704)
Q Consensus 225 ~~i~q~~~~Lq~~I~q~~~d~~~~~p---------v~lVen~p~c~~N~~ge~vLP~~~~W~~~Ll~~c~s 286 (704)
..-....+.+.+.|.+..... ...| ..++-..|.....+.|+.+||..+..+..|...|..
T Consensus 177 Aktg~gI~eL~~~L~~~l~~~-~e~~l~~dLv~~gd~v~lv~pid~~~pkgr~ilp~~~~ird~l~~~~~~ 246 (423)
T 3qq5_A 177 ALQKKGFDDIGKTISEILPGD-EEIPYLGDLIDGGDLVILVVPIDLGAPKGRLIMPQVHAIREALDREAIA 246 (423)
T ss_dssp SCCTTSTTTHHHHHHHHSCCC-CCCCSCSCCCCTTCCEEEECCCSCCSSTTCCCHHHHHHHHHHHHTTCEE
T ss_pred CCCCCCHHHHHHHHHHhhhhh-ccCcchhhccccCceEEEEeeccccCcCCccccchHHHHHHHHHhhhHH
Confidence 011234455666665554221 1111 112234566667778888898876556666666644
No 24
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.36 E-value=3.9e-12 Score=131.03 Aligned_cols=120 Identities=17% Similarity=0.194 Sum_probs=87.1
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHH
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 158 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ 158 (704)
.++|+|+|.+|||||||+|+|+|... .++..+++|.+.......+.+..+.||||||+.+..... ....+ ...+
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~--~~~~~---~~~~ 76 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHS--IDELI---ARNF 76 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSC--HHHHH---HHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCC--HHHHH---HHHh
Confidence 57999999999999999999999865 666778888888888888899999999999998653211 11111 2334
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccccc-ccEEEEEEccCCCC
Q 005287 159 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIW-FNTILVMTHSSSTL 212 (704)
Q Consensus 159 ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~-k~vIVVLTK~D~l~ 212 (704)
+....+|++++|++..... ........+.+. . .|+++|+||+|+..
T Consensus 77 ~~~~~~d~vi~v~D~~~~~---~~~~~~~~~~~~-----~~~p~ilv~NK~Dl~~ 123 (271)
T 3k53_A 77 ILDGNADVIVDIVDSTCLM---RNLFLTLELFEM-----EVKNIILVLNKFDLLK 123 (271)
T ss_dssp HHTTCCSEEEEEEEGGGHH---HHHHHHHHHHHT-----TCCSEEEEEECHHHHH
T ss_pred hhccCCcEEEEEecCCcch---hhHHHHHHHHhc-----CCCCEEEEEEChhcCc
Confidence 4445789999998765432 122233333332 3 79999999999763
No 25
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.35 E-value=4.1e-12 Score=118.22 Aligned_cols=120 Identities=18% Similarity=0.143 Sum_probs=73.1
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEc--CeEEEEEECCCCCCcccchhhhhHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVN--GIKVTFIDTPGFLPSCVRNVKRNRKIMLSV 155 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~--G~~v~LIDTPGl~d~~~~~~~~n~~il~~I 155 (704)
..++|+|+|.+|||||||+|+|++...... ..+++........... ...+.++||||..+.. ...
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~--------~~~--- 68 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRES--YIPTVEDTYRQVISCDKSICTLQITDTTGSHQFP--------AMQ--- 68 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSS--CCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCH--------HHH---
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCCccccEEEEEEECCEEEEEEEEECCCchhhH--------HHH---
Confidence 358999999999999999999998653321 1122211111122233 3478999999986431 111
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 156 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 156 k~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
..++. .+|++++|++++....-......+..+.+..+.....|+++|+||+|+..
T Consensus 69 ~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~ 123 (172)
T 2erx_A 69 RLSIS--KGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 123 (172)
T ss_dssp HHHHH--HCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG
T ss_pred HHhcc--cCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccc
Confidence 12333 46999999887643211123345555555443223579999999999864
No 26
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.34 E-value=6.9e-13 Score=146.18 Aligned_cols=123 Identities=15% Similarity=0.080 Sum_probs=73.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 159 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~i 159 (704)
.+|+|+|++|||||||+|+|+|...+.+++.+++|++.......+.+..+.||||||+..... .....+......++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~---~~~~~~~~~~~~~~ 80 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDE---PFLAQIRQQAEIAM 80 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC------------CHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcch---hHHHHHHHHHHHHH
Confidence 589999999999999999999998888888889999988888888999999999999964321 11123333334445
Q ss_pred hcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCCC
Q 005287 160 RRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 213 (704)
Q Consensus 160 k~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~p 213 (704)
+ .+|++++|++....- ...+..+.+.+.+ ..+|+++|+||+|+...
T Consensus 81 ~--~ad~il~vvD~~~~~-~~~d~~~~~~l~~-----~~~pvilv~NK~D~~~~ 126 (436)
T 2hjg_A 81 D--EADVIIFMVNGREGV-TAADEEVAKILYR-----TKKPVVLAVNKLDNTEM 126 (436)
T ss_dssp H--HCSEEEEEEETTTCS-CHHHHHHHHHHTT-----CCSCEEEEEECCCC---
T ss_pred H--hCCEEEEEEeCCCCC-CHHHHHHHHHHHH-----cCCCEEEEEECccCccc
Confidence 4 579999997764321 1234444444432 35899999999998743
No 27
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.33 E-value=7.9e-13 Score=146.52 Aligned_cols=124 Identities=15% Similarity=0.087 Sum_probs=76.9
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHH
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 158 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ 158 (704)
..+|+|+|++|||||||+|+|+|...+.+...+++|++.......+.+..+.||||||+..... ...+.+......+
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~---~~~~~~~~~~~~~ 99 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDE---PFLAQIRQQAEIA 99 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC---------CCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcch---HHHHHHHHHHHhh
Confidence 4699999999999999999999998887888889999998888888999999999999974321 1223444444445
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCCC
Q 005287 159 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 213 (704)
Q Consensus 159 ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~p 213 (704)
++ .+|++|+|++.... ....+..+++.+.+ ..+|+++|+||+|....
T Consensus 100 ~~--~ad~il~VvD~~~~-~~~~d~~l~~~l~~-----~~~pvilV~NK~D~~~~ 146 (456)
T 4dcu_A 100 MD--EADVIIFMVNGREG-VTAADEEVAKILYR-----TKKPVVLAVNKLDNTEM 146 (456)
T ss_dssp HH--HCSEEEEEEESSSC-SCHHHHHHHHHHTT-----CCSCEEEEEECC-----
T ss_pred Hh--hCCEEEEEEeCCCC-CChHHHHHHHHHHH-----cCCCEEEEEECccchhh
Confidence 54 57999999775431 22234455555543 36899999999998743
No 28
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.33 E-value=6.8e-12 Score=118.36 Aligned_cols=121 Identities=17% Similarity=0.144 Sum_probs=75.4
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCe--EEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~--~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
...++|+|+|.+|||||||+|+|++.........+.++.+........++. .+.++||||..... . .
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~--------~---~ 76 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFR--------S---V 76 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC-----------------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHH--------H---H
Confidence 457899999999999999999999877543322233334444444455654 78999999964321 1 1
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 155 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 155 Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
...+++ .+|++++|++++....-..-...+..+..... ...|+++|+||+|+..
T Consensus 77 ~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~ 130 (180)
T 2g6b_A 77 THAYYR--DAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ--HDVALMLLGNKVDSAH 130 (180)
T ss_dssp --CCGG--GCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECCSTTS
T ss_pred HHHHcc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccCc
Confidence 122332 57999999877643210111234444444322 3579999999999874
No 29
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.33 E-value=8.6e-13 Score=138.83 Aligned_cols=121 Identities=19% Similarity=0.179 Sum_probs=82.4
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCC-CcccchhhhhHHHHHHHHH
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFL-PSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~-d~~~~~~~~n~~il~~Ik~ 157 (704)
..+|+|+|++|||||||+|+|+|...+.++..+++|++........++.++.++||||+. .... ..+..+......
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~---~l~~~~~~~~~~ 84 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKR---AINRLMNKAASS 84 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHH---HHHHHHTCCTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchh---hHHHHHHHHHHH
Confidence 458999999999999999999999887777767788776665667788999999999996 2210 011111111111
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
++ ..+|++++|++....+ ..+..+++.+.. ...|.|+|+||+|..
T Consensus 85 ~l--~~~D~vl~Vvd~~~~~--~~~~~i~~~l~~-----~~~P~ilvlNK~D~~ 129 (301)
T 1ega_A 85 SI--GDVELVIFVVEGTRWT--PDDEMVLNKLRE-----GKAPVILAVNKVDNV 129 (301)
T ss_dssp CC--CCEEEEEEEEETTCCC--HHHHHHHHHHHS-----SSSCEEEEEESTTTC
T ss_pred HH--hcCCEEEEEEeCCCCC--HHHHHHHHHHHh-----cCCCEEEEEECcccC
Confidence 12 2578999987765422 234444444432 247999999999976
No 30
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.33 E-value=5.3e-12 Score=119.18 Aligned_cols=119 Identities=21% Similarity=0.291 Sum_probs=75.5
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHH
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 158 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ 158 (704)
.++|+++|.+|||||||+|.|++... .++..+++|.+.......+++..+.++||||....... ...+.+. ..+
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~---~~~ 76 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENV-YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTAN--SIDEIIA---RDY 76 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSS-SCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSS--SHHHHHH---HHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCe-eccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCc--chhHHHH---HHH
Confidence 47999999999999999999998753 33444555665555555667899999999998764211 1111221 123
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 159 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 159 ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
++...+|++++|++..... .....+..+.+ ...|+++|.||+|+.
T Consensus 77 ~~~~~~~~~i~v~D~~~~~---~~~~~~~~~~~-----~~~p~ilv~nK~Dl~ 121 (165)
T 2wji_A 77 IINEKPDLVVNIVDATALE---RNLYLTLQLME-----MGANLLLALNKMDLA 121 (165)
T ss_dssp HHHHCCSEEEEEEETTCHH---HHHHHHHHHHH-----TTCCEEEEEECHHHH
T ss_pred HhcCCCCEEEEEecCCchh---HhHHHHHHHHh-----cCCCEEEEEEchHhc
Confidence 3223679999997765422 11223333332 247999999999975
No 31
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.33 E-value=2.9e-12 Score=139.42 Aligned_cols=124 Identities=13% Similarity=0.165 Sum_probs=87.2
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
...+|+|||.||||||||+|+|+|.. +.+++++.+|.++......+.+.++.|+||||+.+...........++ .
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l----~ 145 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTE-SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVI----A 145 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBC-CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHH----H
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHH----H
Confidence 34699999999999999999999976 666788999999999999999999999999999876433212222333 3
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccc-ccccEEEEEEccCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA-IWFNTILVMTHSSST 211 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~-~~k~vIVVLTK~D~l 211 (704)
.++ .+|++++|++....- .+..++..--..++.. ..+|.++|+||.|..
T Consensus 146 ~i~--~ad~il~vvD~~~p~---~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 146 VAR--TCNLLFIILDVNKPL---HHKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HHH--HCSEEEEEEETTSHH---HHHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred HHH--hcCccccccccCccH---HHHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 343 469999997765321 2333333323333432 246889999999964
No 32
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.32 E-value=7.4e-12 Score=130.52 Aligned_cols=129 Identities=20% Similarity=0.168 Sum_probs=74.5
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccc-----cCCC---Cccce---------------------------------
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTET-----DAFQ---PATDC--------------------------------- 116 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~v-----s~~~---~tT~~--------------------------------- 116 (704)
...+|+|+|.+|||||||+|+|+|...... +..+ .+|+.
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI 102 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHH
Confidence 346999999999999999999999886322 1111 01110
Q ss_pred -----------------EEEEE-eeEcCeEEEEEECCCCCCcccch--hhhhHHHHHHHHHHHhcCCCCEEEEEEeccCc
Q 005287 117 -----------------IREVK-GSVNGIKVTFIDTPGFLPSCVRN--VKRNRKIMLSVKKFIRRSPPDIVLYFERLDLI 176 (704)
Q Consensus 117 -----------------~~~~~-~~~~G~~v~LIDTPGl~d~~~~~--~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~ 176 (704)
...+. ....+.+++||||||+....... ......+......++. .+|++++|++....
T Consensus 103 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~iilvvd~~~~ 180 (315)
T 1jwy_B 103 IRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIK--KQNAIIVAVTPANT 180 (315)
T ss_dssp HHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHH--STTEEEEEEEESSS
T ss_pred HHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHc--CCCeEEEEEEecCc
Confidence 00000 11134689999999997632110 0112334444556665 67988888765322
Q ss_pred cCCCCc-HHHHHHHHHHhcccccccEEEEEEccCCCCC
Q 005287 177 SMGFSD-FPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 213 (704)
Q Consensus 177 t~~~~D-~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~p 213 (704)
.....+ ..+++.+.. ...|+++|+||+|+..+
T Consensus 181 ~~~~~~~~~i~~~~~~-----~~~~~i~v~NK~Dl~~~ 213 (315)
T 1jwy_B 181 DLANSDALQLAKEVDP-----EGKRTIGVITKLDLMDK 213 (315)
T ss_dssp CSTTCSHHHHHHHHCS-----SCSSEEEEEECTTSSCS
T ss_pred chhhhHHHHHHHHhCC-----CCCcEEEEEcCcccCCc
Confidence 221123 345554432 25799999999998853
No 33
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.31 E-value=8.1e-12 Score=119.13 Aligned_cols=121 Identities=21% Similarity=0.259 Sum_probs=81.6
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
..++|+|+|.+|||||||+|+|++.. +.++..+++|.+.........+..+.++||||....... ...+.+.. .
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~---~ 79 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTAN--SIDEIIAR---D 79 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTC-EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSS--SHHHHHHH---H
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccc--cHHHHHHH---H
Confidence 46899999999999999999999976 344455667777777777788999999999998764221 11112222 2
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
++....+|++++|++..... .....+..... ...|+++|+||+|+..
T Consensus 80 ~~~~~~~~~~i~v~d~~~~~------~~~~~~~~~~~--~~~piilv~nK~Dl~~ 126 (188)
T 2wjg_A 80 YIINEKPDLVVNIVDATALE------RNLYLTLQLME--MGANLLLALNKMDLAK 126 (188)
T ss_dssp HHHHHCCSEEEEEEEGGGHH------HHHHHHHHHHT--TTCCEEEEEECHHHHH
T ss_pred HHhccCCCEEEEEecchhHH------HHHHHHHHHHh--cCCCEEEEEEhhhccc
Confidence 33222579999997765321 12233333221 2479999999999763
No 34
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.30 E-value=8.3e-12 Score=115.34 Aligned_cols=119 Identities=19% Similarity=0.131 Sum_probs=73.5
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCe--EEEEEECCCCCCcccchhhhhHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIMLSV 155 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~--~v~LIDTPGl~d~~~~~~~~n~~il~~I 155 (704)
..++|+|+|.+|||||||+|++++...... ..+++...........+. .+.++||||.... .....
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~--------~~~~~-- 69 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEK--YDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF--------ASMRD-- 69 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSC--CCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC--------HHHHH--
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCccc--CCCCcceeEEEEEEECCEEEEEEEEECCCchhh--------HHHHH--
Confidence 358999999999999999999997664332 234444433444455554 5899999997543 11211
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 156 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 156 k~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
.+++ .+|++++|+++.....-..-...+..+.+... ....|+++|+||+|+..
T Consensus 70 -~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 122 (167)
T 1kao_A 70 -LYIK--NGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR-YEKVPVILVGNKVDLES 122 (167)
T ss_dssp -HHHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECGGGGG
T ss_pred -HHhc--cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcccc
Confidence 2333 45899999876543210011123333333322 23579999999999863
No 35
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.30 E-value=1.4e-12 Score=146.28 Aligned_cols=120 Identities=18% Similarity=0.243 Sum_probs=87.4
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCC-Ccccchhhhh-HHHHHHHH
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFL-PSCVRNVKRN-RKIMLSVK 156 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~-d~~~~~~~~n-~~il~~Ik 156 (704)
.++|+|+|.||||||||+|+|++.+.+.++..+++|++.......++|.++.|+||||+. +......... ....
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~---- 318 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTL---- 318 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHH----
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHH----
Confidence 489999999999999999999999888888888999998887888899999999999998 5421110000 1122
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 157 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
.+++ .+|++|+|++++.... ..+..+++.+ ..+|+|+|+||+|+..
T Consensus 319 ~~~~--~aD~vl~VvD~s~~~s-~~~~~il~~l-------~~~piivV~NK~DL~~ 364 (482)
T 1xzp_A 319 QEIE--KADIVLFVLDASSPLD-EEDRKILERI-------KNKRYLVVINKVDVVE 364 (482)
T ss_dssp HHHH--HCSEEEEEEETTSCCC-HHHHHHHHHH-------TTSSEEEEEEECSSCC
T ss_pred HHhh--cccEEEEEecCCCCCC-HHHHHHHHHh-------cCCCEEEEEECccccc
Confidence 2333 5699999987754321 2333444332 1479999999999863
No 36
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.30 E-value=2.4e-11 Score=125.26 Aligned_cols=129 Identities=16% Similarity=0.078 Sum_probs=73.6
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCcc-----ccCCCC----------------------ccce-------------
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTE-----TDAFQP----------------------ATDC------------- 116 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~-----vs~~~~----------------------tT~~------------- 116 (704)
...++|+|+|.+|||||||+|+|+|..... ++..+. +|.+
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 456799999999999999999999988652 222221 1211
Q ss_pred ----------EEEEEee-EcCeEEEEEECCCCCCcccch--hhhhHHHHHHHHHHHhcCCCC-EEEEEEeccCccCCCCc
Q 005287 117 ----------IREVKGS-VNGIKVTFIDTPGFLPSCVRN--VKRNRKIMLSVKKFIRRSPPD-IVLYFERLDLISMGFSD 182 (704)
Q Consensus 117 ----------~~~~~~~-~~G~~v~LIDTPGl~d~~~~~--~~~n~~il~~Ik~~ik~~~~d-vVL~Vi~ld~~t~~~~D 182 (704)
...+... ..+.++.||||||+......+ ..........+..+++ .++ ++|+|++....-. ..+
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~il~v~d~~~~~~-~~~ 180 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT--KENCLILAVSPANSDLA-NSD 180 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHT--STTEEEEEEEESSSCGG-GCH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHc--CCCeEEEEEecCCcchh-hhH
Confidence 0001101 114689999999998643100 0111233344455664 445 4456766543211 123
Q ss_pred H-HHHHHHHHHhcccccccEEEEEEccCCCCC
Q 005287 183 F-PLLKLMTEVFGTAIWFNTILVMTHSSSTLP 213 (704)
Q Consensus 183 ~-~lLk~L~~~fG~~~~k~vIVVLTK~D~l~p 213 (704)
. .+++.+.. ...|+++|+||+|+..+
T Consensus 181 ~~~~~~~~~~-----~~~~~i~V~NK~Dl~~~ 207 (299)
T 2aka_B 181 ALKIAKEVDP-----QGQRTIGVITKLDLMDE 207 (299)
T ss_dssp HHHHHHHHCT-----TCSSEEEEEECGGGSCT
T ss_pred HHHHHHHhCC-----CCCeEEEEEEccccCCC
Confidence 2 23333321 25799999999998743
No 37
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.30 E-value=1.8e-11 Score=116.42 Aligned_cols=123 Identities=19% Similarity=0.188 Sum_probs=74.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 159 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~i 159 (704)
++|+|+|.+|||||||+|+|++.. +..+..+++|.....+.. . .+.++||||+.....-+....+........++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~t~~~~~~~~--~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKK-VRRGKRPGVTRKIIEIEW--K--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 76 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCC-CSSSSSTTCTTSCEEEEE--T--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcC-CccCCCCCccceeEEEec--C--CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence 589999999999999999999986 444444566666655543 2 78999999986542211011122223333344
Q ss_pred hc--CCCCEEEEEEeccCccC----------CCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 160 RR--SPPDIVLYFERLDLISM----------GFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 160 k~--~~~dvVL~Vi~ld~~t~----------~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
+. ..++++++|.+...... ...+..++..+.. ...|+++|+||+|+..
T Consensus 77 ~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~ 136 (190)
T 2cxx_A 77 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE-----LDIPTIVAVNKLDKIK 136 (190)
T ss_dssp HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH-----TTCCEEEEEECGGGCS
T ss_pred HhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHh-----cCCceEEEeehHhccC
Confidence 32 35678888866543210 0011122222222 2479999999999863
No 38
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.30 E-value=2.6e-11 Score=115.64 Aligned_cols=116 Identities=12% Similarity=0.117 Sum_probs=75.8
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
...++|+|+|.+|||||||+|++++.. .....+ |..........++.++.++||||..... ....
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~---~~~~~~-t~~~~~~~~~~~~~~~~~~Dt~G~~~~~-----------~~~~ 80 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED---VDTISP-TLGFNIKTLEHRGFKLNIWDVGGQKSLR-----------SYWR 80 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC---CSSCCC-CSSEEEEEEEETTEEEEEEEECCSHHHH-----------TTGG
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC---CCcccc-cCccceEEEEECCEEEEEEECCCCHhHH-----------HHHH
Confidence 357999999999999999999999877 212222 3334444455678999999999984221 1111
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc--cccccEEEEEEccCCCC
Q 005287 157 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSSTL 212 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~--~~~k~vIVVLTK~D~l~ 212 (704)
.++ ..+|++++|++++.... -..+...+...... ....|+++|+||+|+..
T Consensus 81 ~~~--~~~d~ii~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 133 (186)
T 1ksh_A 81 NYF--ESTDGLIWVVDSADRQR---MQDCQRELQSLLVEERLAGATLLIFANKQDLPG 133 (186)
T ss_dssp GGC--TTCSEEEEEEETTCGGG---HHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred HHh--cCCCEEEEEEECcCHHH---HHHHHHHHHHHHhChhcCCCcEEEEEeCccCCC
Confidence 223 36799999987764321 12233344444332 13579999999999864
No 39
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.29 E-value=1.5e-11 Score=118.03 Aligned_cols=121 Identities=19% Similarity=0.157 Sum_probs=74.7
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEc--CeEEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVN--GIKVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~--G~~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
...++|+|+|.+|||||||+|+|++...... ..+++........... ...+.|+||||.... .....
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~~~- 74 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDT--YIPTIEDTYRQVISCDKSVCTLQITDTTGSHQF--------PAMQR- 74 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCT--TSCCCCEEEEEEEEETTEEEEEEEEECCGGGSC--------HHHHH-
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCc--ccCccccceeEEEEECCEEEEEEEEeCCChHHh--------HHHHH-
Confidence 4579999999999999999999998654322 1122222112222233 347899999997433 11111
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 155 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 155 Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
.++. .+|++++|++++....-......+..+.+..+.....|+++|+||+|+..
T Consensus 75 --~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~ 128 (199)
T 2gf0_A 75 --LSIS--KGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ 128 (199)
T ss_dssp --HHHH--HCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS
T ss_pred --Hhhc--cCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc
Confidence 2232 46999999887643211122335555555543333579999999999863
No 40
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.29 E-value=1.3e-11 Score=118.34 Aligned_cols=121 Identities=21% Similarity=0.193 Sum_probs=78.5
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
...++|+|+|.+|||||||+|+|++...... ..+..|.+........++ ..+.|+||||...... .
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~--- 81 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTES-YISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT--------I--- 81 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSC-CCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCT--------T---
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCC-CCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhh--------h---
Confidence 4568999999999999999999998664332 223444455555555666 5789999999643311 1
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCCC
Q 005287 155 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 213 (704)
Q Consensus 155 Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~p 213 (704)
...+++ .+|++++|++++....-......+..+..... ...|+++|+||+|+...
T Consensus 82 ~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~Dl~~~ 136 (196)
T 3tkl_A 82 TSSYYR--GAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTTK 136 (196)
T ss_dssp HHHHHT--TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCTTT
T ss_pred HHHHHh--hCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccccc
Confidence 122332 67999999887653211112234444444422 24799999999998743
No 41
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.29 E-value=1e-12 Score=146.49 Aligned_cols=123 Identities=21% Similarity=0.246 Sum_probs=79.2
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
..++|+|+|.||||||||+|+|++.+.+.++..+++|++.......++|.++.||||||+.+.... .+.. .+.+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~----ve~~--gi~~ 296 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQ----VEKI--GVER 296 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC------------------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhH----HHHH--HHHH
Confidence 358999999999999999999999888878888888988877677789999999999999764211 0111 0122
Q ss_pred HHh-cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCCCC
Q 005287 158 FIR-RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLPE 214 (704)
Q Consensus 158 ~ik-~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~pd 214 (704)
... ...+|++++|++.+.... ..+..+++.+. .+|+|+|+||+|+....
T Consensus 297 ~~~~~~~aD~vl~VvD~s~~~~-~~~~~i~~~l~-------~~piivV~NK~Dl~~~~ 346 (462)
T 3geh_A 297 SRQAANTADLVLLTIDAATGWT-TGDQEIYEQVK-------HRPLILVMNKIDLVEKQ 346 (462)
T ss_dssp --CCCCSCSEEEEEEETTTCSC-HHHHHHHHHHT-------TSCEEEEEECTTSSCGG
T ss_pred HhhhhhcCCEEEEEeccCCCCC-HHHHHHHHhcc-------CCcEEEEEECCCCCcch
Confidence 221 136899999987764321 12333333332 26999999999987543
No 42
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.29 E-value=1e-11 Score=114.88 Aligned_cols=119 Identities=18% Similarity=0.176 Sum_probs=73.0
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 155 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~I 155 (704)
..++|+|+|.+|||||||+|+|++..... ...+++...........+ ..+.++||||.... ....
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~--------~~~~--- 69 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVE--DYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY--------AAIR--- 69 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCC---C--------HHHH---
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCC--CCCCCcceEEEEEEEECCEEEEEEEEECCCcchh--------HHHH---
Confidence 35899999999999999999999876332 233444444334444555 47899999997533 1121
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 156 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 156 k~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
..+++ .+|++++|++++....-......+..+..... ....|+++|+||+|+..
T Consensus 70 ~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 123 (168)
T 1u8z_A 70 DNYFR--SGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLED 123 (168)
T ss_dssp HHHHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTSCEEEEEECGGGGG
T ss_pred HHHhh--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccccc
Confidence 22333 46999999877643210011223334443322 12479999999999864
No 43
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.28 E-value=5.1e-12 Score=117.40 Aligned_cols=119 Identities=17% Similarity=0.142 Sum_probs=72.4
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
.++|+|+|.+|||||||+|+|++....... .+..+.+.......+++ ..+.++||||..... .. ..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~--------~~---~~ 70 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENK-EPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFA--------SL---AP 70 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTC-CCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG--------GG---HH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCccceeEEEEEEEECCEEEEEEEEECCCChhhh--------hh---hh
Confidence 589999999999999999999987643321 11122222222333343 578999999964321 11 12
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCCC
Q 005287 157 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 213 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~p 213 (704)
.+++ .+|++++|++++....-......+..+..... ...|+++|+||+|+..+
T Consensus 71 ~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 71 XYYR--NAQAALVVYDVTKPQSFIKARHWVKELHEQAS--KDIIIALVGNKIDXLQE 123 (170)
T ss_dssp HHHT--TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGGS
T ss_pred hhhc--cCcEEEEEEecCChHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCCcccc
Confidence 3343 67999999877643210011123334443322 24789999999998754
No 44
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.28 E-value=4.8e-12 Score=117.79 Aligned_cols=120 Identities=13% Similarity=0.060 Sum_probs=73.6
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccc-cCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTET-DAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~v-s~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
..++|+|+|.+|||||||+|+|++...... .+..+.+...........+..+.++||||...... . ..
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~--------~---~~ 73 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRA--------L---AP 73 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGG--------G---TH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhc--------c---cH
Confidence 458999999999999999999998764332 22222333333333322346889999999843211 1 11
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 157 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
.+++ .+|++++|++++...........+..+.... ....|+++|.||+|+..
T Consensus 74 ~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~~iilv~nK~Dl~~ 125 (170)
T 1z0j_A 74 MYYR--GSAAAIIVYDITKEETFSTLKNWVRELRQHG--PPSIVVAIAGNKCDLTD 125 (170)
T ss_dssp HHHT--TCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CTTSEEEEEEECTTCGG
T ss_pred hhCc--CCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCcEEEEEECCcccc
Confidence 2332 6799999987754321001123344444431 22468999999999874
No 45
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.27 E-value=1.2e-11 Score=116.19 Aligned_cols=121 Identities=17% Similarity=0.112 Sum_probs=73.5
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCcccc-CCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETD-AFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSV 155 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs-~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~I 155 (704)
...++|+|+|.+|||||||+|+|++....... ...+.+.....+........+.|+||||.... ... .
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~---~ 81 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF--------RAV---T 81 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGT--------CHH---H
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHh--------hhh---H
Confidence 34689999999999999999999987643321 11111222222222222357899999996432 111 2
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 156 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 156 k~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
..+++ .+|++++|++++....-......+..+..... ...|+++|+||+|+..
T Consensus 82 ~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~ 134 (179)
T 1z0f_A 82 RSYYR--GAAGALMVYDITRRSTYNHLSSWLTDARNLTN--PNTVIILIGNKADLEA 134 (179)
T ss_dssp HHHHH--TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGG
T ss_pred HHHhc--cCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccccc
Confidence 23343 67999999887643211112234444444322 2478999999999863
No 46
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.27 E-value=2.5e-11 Score=114.06 Aligned_cols=119 Identities=18% Similarity=0.146 Sum_probs=75.1
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
...++|+|+|.+|||||||+|+|++...... ..+..|.+.........+ ..+.++||||.......
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------- 74 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGS-YITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTI----------- 74 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---C-CTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSC-----------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCc-cCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhh-----------
Confidence 3568999999999999999999998775432 233445555555556677 67899999996433110
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 155 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 155 Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
...++ ..+|++++|++++....-..-...+..+... ....|+++|+||+|+..
T Consensus 75 ~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~p~ilv~nK~Dl~~ 127 (181)
T 3tw8_B 75 TSTYY--RGTHGVIVVYDVTSAESFVNVKRWLHEINQN---CDDVCRILVGNKNDDPE 127 (181)
T ss_dssp CGGGG--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHH---CTTSEEEEEEECTTCGG
T ss_pred HHHHh--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHh---CCCCCEEEEEECCCCch
Confidence 11123 3679999998776432100111233333332 22479999999999763
No 47
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.27 E-value=1.1e-11 Score=128.88 Aligned_cols=119 Identities=13% Similarity=0.146 Sum_probs=82.3
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHH
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 158 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ 158 (704)
.++|+++|.+|||||||+|+|+|.. ..++..+++|.+........ +..+.++||||....... ...+.+. ..+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~-~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~--~~~e~v~---~~~ 75 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHN-QRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPY--SPEAKVA---RDY 75 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCC-CCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCS--SHHHHHH---HHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCC--ChHHHHH---HHH
Confidence 5799999999999999999999976 44566778888776666555 788999999999764321 1112222 234
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 159 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 159 ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
+....+|++++|++..... ....+...+.+ ...|+++|+||+|+..
T Consensus 76 ~~~~~~d~vi~V~D~t~~e---~~~~~~~~l~~-----~~~p~ilv~NK~Dl~~ 121 (272)
T 3b1v_A 76 LLSQRADSILNVVDATNLE---RNLYLTTQLIE-----TGIPVTIALNMIDVLD 121 (272)
T ss_dssp HHTTCCSEEEEEEEGGGHH---HHHHHHHHHHH-----TCSCEEEEEECHHHHH
T ss_pred HhcCCCCEEEEEecCCchH---hHHHHHHHHHh-----cCCCEEEEEEChhhCC
Confidence 4434789999998765432 12223333333 2589999999999763
No 48
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.27 E-value=1.3e-11 Score=115.73 Aligned_cols=121 Identities=15% Similarity=0.041 Sum_probs=66.6
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 155 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~I 155 (704)
..++|+|+|.+|||||||+|+|++..........+.|..... ..+++ ..+.++||||...... ..+ .
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~D~~g~~~~~~------~~~---~ 71 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERT--LTVDGEDTTLVVVDTWEAEKLDK------SWS---Q 71 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEE--EEETTEEEEEEEECCC-------------CHH---H
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEE--EEECCEEEEEEEEecCCCCccch------hhh---H
Confidence 468999999999999999999999876555443333333332 34455 4788999999854210 011 1
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 156 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 156 k~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
..++ ..+|++++|.+++....-......+..+.... .....|+++|+||+|+..
T Consensus 72 ~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~~piilv~NK~Dl~~ 125 (175)
T 2nzj_A 72 ESCL--QGGSAYVIVYSIADRGSFESASELRIQLRRTH-QADHVPIILVGNKADLAR 125 (175)
T ss_dssp HHTT--TSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTT
T ss_pred Hhhc--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-ccCCCCEEEEEEChhhcc
Confidence 1222 25799999987764321001112223333221 122579999999999874
No 49
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.27 E-value=2.7e-11 Score=113.03 Aligned_cols=116 Identities=16% Similarity=0.086 Sum_probs=77.2
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
...++|+|+|.+|||||||+|+|++...... .+ |.........+.+..+.++||||...... . ..
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~---~~-t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~--------~---~~ 69 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVTT---IP-TIGFNVETVTYKNLKFQVWDLGGLTSIRP--------Y---WR 69 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCC---CC-CSSEEEEEEEETTEEEEEEEECCCGGGGG--------G---GG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCc---CC-cCccceEEEEECCEEEEEEECCCChhhhH--------H---HH
Confidence 4579999999999999999999987664321 22 33444445566789999999999854311 0 11
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccc--ccccEEEEEEccCCCC
Q 005287 157 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA--IWFNTILVMTHSSSTL 212 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~--~~k~vIVVLTK~D~l~ 212 (704)
.++ ..+|++++|++++.... -......+...+... ...|+++|+||+|+..
T Consensus 70 ~~~--~~~d~ii~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 122 (171)
T 1upt_A 70 CYY--SNTDAVIYVVDSCDRDR---IGISKSELVAMLEEEELRKAILVVFANKQDMEQ 122 (171)
T ss_dssp GGC--TTCSEEEEEEETTCCTT---HHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred HHh--ccCCEEEEEEECCCHHH---HHHHHHHHHHHHhchhhCCCEEEEEEECCCCcC
Confidence 223 26799999987764321 122334444443321 3579999999999874
No 50
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.27 E-value=3e-11 Score=114.09 Aligned_cols=120 Identities=17% Similarity=0.161 Sum_probs=75.6
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
...++|+|+|.+|||||||+|+|++.... ....+++...........+ ..+.|+||||.... ....
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~~-- 83 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY--------AAIR-- 83 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCC--CSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC--------HHHH--
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCC--CcCCCccceEEEEEEEECCEEEEEEEEECCCCccc--------HHHH--
Confidence 35689999999999999999999987632 2234444444444445555 47899999997543 1121
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 155 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 155 Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
..+++ .+|++++|++++....-......+..+..... ....|+++|+||+|+..
T Consensus 84 -~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 137 (187)
T 2a9k_A 84 -DNYFR--SGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLED 137 (187)
T ss_dssp -HHHHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTCCEEEEEECGGGGG
T ss_pred -HHHhc--cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence 22333 46999999877643210011223334443322 22479999999999863
No 51
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.26 E-value=1.7e-11 Score=116.36 Aligned_cols=118 Identities=16% Similarity=0.187 Sum_probs=74.1
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeE--EEEEECCCCCCcccchhhhhHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIK--VTFIDTPGFLPSCVRNVKRNRKIMLSV 155 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~--v~LIDTPGl~d~~~~~~~~n~~il~~I 155 (704)
..++|+|+|.+|||||||+|+|++.... ....+++..........++.. +.|+||||...... +.
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~--- 69 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA--------MR--- 69 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCC--CCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CT--------TH---
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHH--------HH---
Confidence 4689999999999999999999987643 233455555555555566654 67799999754321 11
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 156 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 156 k~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
..++. .+|++++|++++....-......+..+.... .....|+++|+||+|+.
T Consensus 70 ~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~i~v~nK~Dl~ 122 (189)
T 4dsu_A 70 DQYMR--TGEGFLCVFAINNTKSFEDIHHYREQIKRVK-DSEDVPMVLVGNKCDLP 122 (189)
T ss_dssp HHHHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHT-TCSCCCEEEEEECTTSS
T ss_pred HHHHh--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCcEEEEEECccCc
Confidence 12232 4699999987764321001112333333322 22357999999999986
No 52
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.26 E-value=1.1e-11 Score=115.50 Aligned_cols=120 Identities=15% Similarity=-0.029 Sum_probs=62.1
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHH
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 158 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ 158 (704)
.++|+|+|.+|||||||+|+|++.....+....++|.. ...........+.++||||..... ... ..+
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~--------~~~---~~~ 69 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQDGGR--------WLP---GHC 69 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEE-EEEEETTEEEEEEEEECC-----------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceE-EEEEECCEEEEEEEEECCCCccch--------hhh---hhh
Confidence 47999999999999999999998876655544444442 222222234578899999975431 111 122
Q ss_pred HhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCCC
Q 005287 159 IRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 213 (704)
Q Consensus 159 ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~p 213 (704)
+ ..+|++++|.+++....-......+..+.... .....|+++|.||+|+...
T Consensus 70 ~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~ 121 (166)
T 3q72_A 70 M--AMGDAYVIVYSVTDKGSFEKASELRVQLRRAR-QTDDVPIILVGNKSDLVRS 121 (166)
T ss_dssp -----CCEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSS
T ss_pred h--hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEeccccccc
Confidence 3 26799999987764321001112222232221 1235799999999998743
No 53
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.26 E-value=6.3e-11 Score=113.95 Aligned_cols=117 Identities=11% Similarity=0.063 Sum_probs=76.2
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
...++|+|+|.+|||||||+|+|++...... ..+ |...........+..+.|+||||.... .....
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~-t~~~~~~~~~~~~~~~~l~Dt~G~~~~-----------~~~~~ 85 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNED--MIP-TVGFNMRKITKGNVTIKLWDIGGQPRF-----------RSMWE 85 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCS--CCC-CCSEEEEEEEETTEEEEEEEECCSHHH-----------HTTHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCc--cCC-CCceeEEEEEeCCEEEEEEECCCCHhH-----------HHHHH
Confidence 3468999999999999999999998664321 112 333333344567899999999997321 11122
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc--cccccEEEEEEccCCCC
Q 005287 157 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSSTL 212 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~--~~~k~vIVVLTK~D~l~ 212 (704)
.+++ .+|++++|++++... .-..+...+...... ....|+++|+||+|+..
T Consensus 86 ~~~~--~~d~ii~v~D~~~~~---s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (188)
T 1zd9_A 86 RYCR--GVSAIVYMVDAADQE---KIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 138 (188)
T ss_dssp HHHT--TCSEEEEEEETTCGG---GHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred HHHc--cCCEEEEEEECCCHH---HHHHHHHHHHHHHhCcccCCCCEEEEEECCCCcc
Confidence 3443 679999998775432 112333444444332 13579999999999864
No 54
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.26 E-value=1.5e-11 Score=115.49 Aligned_cols=119 Identities=13% Similarity=0.099 Sum_probs=75.3
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 155 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~I 155 (704)
..++|+|+|.+|||||||+|+|++....... .+..+.+.......+.+ ..+.++||||...... . .
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~--------~---~ 80 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTY-QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------L---I 80 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSC-CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGG--------G---S
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHH--------H---H
Confidence 4589999999999999999999976543322 22333344444455555 4789999999643211 1 1
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 156 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 156 k~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
..+++ .+|++++|++++....-......+..+....+ ...|+++|+||+|+..
T Consensus 81 ~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~ 133 (179)
T 2y8e_A 81 PSYIR--DSTVAVVVYDITNTNSFHQTSKWIDDVRTERG--SDVIIMLVGNKTDLSD 133 (179)
T ss_dssp HHHHH--TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT--TSSEEEEEEECGGGGG
T ss_pred HHHhc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCcccc
Confidence 12333 67999999887543210112234444444322 2478999999999864
No 55
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.26 E-value=3.8e-11 Score=115.91 Aligned_cols=120 Identities=17% Similarity=0.146 Sum_probs=76.2
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCe--EEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~--~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
...++|+|+|.+|||||||+|+|++.... ....+++.........+++. .+.|+||||.... ....
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~~-- 79 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY--------AAIR-- 79 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCC--TTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC--------HHHH--
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEcCCChhhh--------HHHH--
Confidence 45689999999999999999999987632 23344544444444455554 7899999997543 1121
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 155 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 155 Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
..+++ .+|++++|++++....-......+..+.... .....|+++|+||+|+..
T Consensus 80 -~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~ 133 (206)
T 2bov_A 80 -DNYFR--SGEGFLCVFSITEMESFAATADFREQILRVK-EDENVPFLLVGNKSDLED 133 (206)
T ss_dssp -HHHHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHT-TCSCCCEEEEEECTTCGG
T ss_pred -HHHHh--hCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEeccCccc
Confidence 22333 4699999987764321001122333343332 122579999999999864
No 56
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.26 E-value=1.7e-11 Score=113.69 Aligned_cols=118 Identities=18% Similarity=0.127 Sum_probs=73.2
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEc--CeEEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVN--GIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~--G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
.++|+|+|.+|||||||+|+|++..... ...+++..........+ ...+.++||||...... .. .
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~~---~ 69 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVE--KYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA--------MR---D 69 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCC--SCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT--------HH---H
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCCccceEEEEEEECCEEEEEEEEECCChHHHHH--------HH---H
Confidence 5899999999999999999999865332 22334333333333333 45789999999764421 11 1
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 157 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
.+++ .+|++++|.+++....-..-...+..+..... ....|+++|+||+|+..
T Consensus 70 ~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 122 (167)
T 1c1y_A 70 LYMK--NGQGFALVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLED 122 (167)
T ss_dssp HHHH--HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC-CSCCCEEEEEECTTCGG
T ss_pred HHhc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-cCCCcEEEEEECccccc
Confidence 2332 46999999877643210112234444444322 23579999999999863
No 57
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.26 E-value=2.5e-11 Score=111.74 Aligned_cols=118 Identities=16% Similarity=0.168 Sum_probs=72.3
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
.++|+++|.+|||||||+|+|++...... ..+++...........+ ..+.++||||..... ... .
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~--------~~~---~ 69 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDE--CDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS--------AMR---D 69 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSC--CCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCC--------HHH---H
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccc--cCCccceEEEEEEEECCEEEEEEEEECCCchhhh--------HHH---H
Confidence 57999999999999999999998754322 23344333333344444 457899999975431 111 1
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 157 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
.++. .+|++++|++++....-..-...+..+.... .....|+++|+||+|+..
T Consensus 70 ~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~-~~~~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 70 QYMR--TGEGFLCVFAINNTKSFEDIHQYREQIKRVK-DSDDVPMVLVGNKSDLAA 122 (166)
T ss_dssp HHHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHH-TCSCCCEEEEEECTTCSC
T ss_pred Hhhc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCcEEEEEEchhhhh
Confidence 2332 4689999987654321001122333333332 122479999999999874
No 58
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.25 E-value=1.8e-11 Score=115.23 Aligned_cols=116 Identities=19% Similarity=0.184 Sum_probs=78.2
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
...++|+|+|.+|||||||+|+|++..... ...+..|.+........++..+.++||||........ .
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-----------~ 73 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTE-QEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMR-----------A 73 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSC-SSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSC-----------C
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCcccc-CCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHH-----------H
Confidence 457899999999999999999999876433 2334445555555566788999999999986542110 0
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 157 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
.++ ..+|++++|++++... ....+..+..... ...|+++|+||+|+..
T Consensus 74 ~~~--~~~d~~i~v~d~~~~~----~~~~~~~l~~~~~--~~~p~ilv~nK~Dl~~ 121 (178)
T 2lkc_A 74 RGA--QVTDIVILVVAADDGV----MPQTVEAINHAKA--ANVPIIVAINKMDKPE 121 (178)
T ss_dssp SSC--CCCCEEEEEEETTCCC----CHHHHHHHHHHGG--GSCCEEEEEETTTSSC
T ss_pred HHH--hhCCEEEEEEECCCCC----cHHHHHHHHHHHh--CCCCEEEEEECccCCc
Confidence 112 3679999998765432 1223334433321 2479999999999863
No 59
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.25 E-value=1.5e-11 Score=117.17 Aligned_cols=114 Identities=18% Similarity=0.148 Sum_probs=70.4
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCcc-ceEEEEEeeEcC-----------------------------
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPAT-DCIREVKGSVNG----------------------------- 126 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT-~~~~~~~~~~~G----------------------------- 126 (704)
...++|+|+|.+|||||||+|+|++..... ...+++ .+.........+
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHE--NTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQ 82 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCS--SCCCCCSCEEEEEEEETTC-----------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCC--CcCccccceeEEEEEEecCccccccccccccccccccccccccccccc
Confidence 457999999999999999999999876432 122222 223222223333
Q ss_pred ----------eEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccc
Q 005287 127 ----------IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA 196 (704)
Q Consensus 127 ----------~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~ 196 (704)
..+.|+||||..... .. ...+++ .+|++++|++++....-......+..+....
T Consensus 83 ~~~~~~~~~~~~~~i~Dt~G~~~~~--------~~---~~~~~~--~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~--- 146 (208)
T 3clv_A 83 HNNYNENLCNIKFDIWDTAGQERYA--------SI---VPLYYR--GATCAIVVFDISNSNTLDRAKTWVNQLKISS--- 146 (208)
T ss_dssp --CCCTTTCEEEEEEEECTTGGGCT--------TT---HHHHHT--TCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---
T ss_pred cccccCccceeEEEEEECCCcHHHH--------HH---HHHHhc--CCCEEEEEEECCCHHHHHHHHHHHHHHHhhC---
Confidence 789999999964321 11 123343 6799999987764321001112333343332
Q ss_pred ccccEEEEEEccC
Q 005287 197 IWFNTILVMTHSS 209 (704)
Q Consensus 197 ~~k~vIVVLTK~D 209 (704)
..|+++|+||+|
T Consensus 147 -~~piilv~NK~D 158 (208)
T 3clv_A 147 -NYIIILVANKID 158 (208)
T ss_dssp -CCEEEEEEECTT
T ss_pred -CCcEEEEEECCC
Confidence 289999999999
No 60
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.25 E-value=1.9e-11 Score=118.40 Aligned_cols=121 Identities=16% Similarity=0.098 Sum_probs=72.6
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCcccc-CCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETD-AFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSV 155 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs-~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~I 155 (704)
...++|+|+|.+|||||||+|+|++....... ...+.+.....+.....+..+.|+||||.... ... .
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~---~ 74 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERY--------RTI---T 74 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG--------HHH---H
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhh--------cch---H
Confidence 34689999999999999999999987644321 11122222222222223458899999998432 111 2
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 156 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 156 k~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
..+++ .+|++++|++++....-......+..+.... ....|+++|+||+|+..
T Consensus 75 ~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~ 127 (203)
T 1zbd_A 75 TAYYR--GAMGFILMYDITNEESFNAVQDWSTQIKTYS--WDNAQVLLVGNKCDMED 127 (203)
T ss_dssp HTTGG--GCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CSSCEEEEEEECTTCTT
T ss_pred HHhhc--CCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECcccCc
Confidence 23333 5799999987754321001112333333321 12479999999999864
No 61
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.25 E-value=2.4e-11 Score=115.37 Aligned_cols=120 Identities=17% Similarity=0.151 Sum_probs=75.9
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
+..++|+|+|.+|||||||+|+|++....... .+..+.+........++ ..+.|+||||.... ...
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~--- 75 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDS-NHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF--------RSV--- 75 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTC-CCCSEEEEEEEEEEETTEEEEEEEEEECCSGGG--------HHH---
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCccceEEEEEEEEECCEEEEEEEEeCCCcHHH--------HHH---
Confidence 44689999999999999999999987644322 22233344444445555 58899999996432 111
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 155 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 155 Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
...++ ..+|++++|++++....-..-...+..+..... ...|+++|+||+|+..
T Consensus 76 ~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~ 129 (186)
T 2bme_A 76 TRSYY--RGAAGALLVYDITSRETYNALTNWLTDARMLAS--QNIVIILCGNKKDLDA 129 (186)
T ss_dssp HHTTS--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGG
T ss_pred HHHHH--hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccccc
Confidence 22233 367999999887643211111233444444322 3579999999999863
No 62
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.24 E-value=3.9e-11 Score=116.61 Aligned_cols=119 Identities=18% Similarity=0.147 Sum_probs=76.3
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
...++|+|+|.+|||||||+|+|++..... ...+..+.+.......+.+ ..+.|+||||...... .
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~--- 85 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNP-SFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRT--------I--- 85 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCC-SSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTC--------C---
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCc-ccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHH--------H---
Confidence 456999999999999999999999876432 2223344455555556667 5789999999743311 0
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 155 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 155 Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
...+++ .+|++++|++++....-......+..+..... ...|+++|+||+|+.
T Consensus 86 ~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~ 138 (213)
T 3cph_A 86 TTAYYR--GAMGIILVYDVTDERTFTNIKQWFKTVNEHAN--DEAQLLLVGNKSDME 138 (213)
T ss_dssp CHHHHT--TCSEEEEEEETTCHHHHHTHHHHHHHHHHHTT--TCSEEEEEEECTTCS
T ss_pred HHHHhc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCc
Confidence 112332 67999999877543210112234444544432 247999999999983
No 63
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.24 E-value=1.8e-11 Score=115.60 Aligned_cols=120 Identities=13% Similarity=0.066 Sum_probs=73.1
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEc--CeEEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVN--GIKVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~--G~~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
...++|+|+|.+|||||||+|+|++........ +..+.+.......+. +..+.|+||||..... ..
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------~~--- 77 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQE-STIGAAFFSQTLAVNDATVKFEIWDTAGQERYH--------SL--- 77 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSC-CCSCCSEEEEEEEETTEEEEEEEEECCCSGGGG--------GG---
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCC-CCceeEEEEEEEEECCEEEEEEEEeCCCChhhh--------hh---
Confidence 346899999999999999999999876544321 122222222223333 4588999999964321 11
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 155 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 155 Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
...+++ .+|++++|++++....-......+..+.... ....|+++|+||+|+..
T Consensus 78 ~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~i~v~nK~Dl~~ 131 (181)
T 2efe_B 78 APMYYR--GAAAAIIVFDVTNQASFERAKKWVQELQAQG--NPNMVMALAGNKSDLLD 131 (181)
T ss_dssp THHHHT--TCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CTTCEEEEEEECTTCTT
T ss_pred hHHHhc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECCcccc
Confidence 112332 6799999987754321011223334444332 12478999999999864
No 64
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.24 E-value=1.1e-11 Score=115.00 Aligned_cols=120 Identities=13% Similarity=0.033 Sum_probs=72.1
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCcccc-CCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETD-AFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs-~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
..++|+|+|.+|||||||+|+|++....... ...+.+...........+..+.++||||..... .. ..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~--------~~---~~ 73 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYH--------SL---AP 73 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG--------GG---HH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhh--------hh---hH
Confidence 3589999999999999999999976544332 111222223333322235688999999974321 11 12
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 157 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
.++ ..+|++++|++++....-......+..+..... ...|+++|.||+|+..
T Consensus 74 ~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilv~nK~Dl~~ 125 (170)
T 1r2q_A 74 MYY--RGAQAAIVVYDITNEESFARAKNWVKELQRQAS--PNIVIALSGNKADLAN 125 (170)
T ss_dssp HHH--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGG
T ss_pred Hhc--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCcc
Confidence 233 267999999877543210011123333333322 2478899999999863
No 65
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.24 E-value=5.5e-11 Score=110.42 Aligned_cols=113 Identities=12% Similarity=0.075 Sum_probs=73.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 159 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~i 159 (704)
++|+|+|.+|||||||+|++++...... .+ |...........+..+.++||||.... ... ...++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~---~~-t~~~~~~~~~~~~~~~~i~Dt~G~~~~--------~~~---~~~~~ 65 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTT---IP-TIGFNVETVEYKNISFTVWDVGGQDKI--------RPL---WRHYF 65 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCC---CC-CSSCCEEEEECSSCEEEEEECCCCGGG--------HHH---HHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcc---cC-cCceeEEEEEECCEEEEEEEcCCChhh--------HHH---HHHHh
Confidence 5899999999999999999987653321 22 333333344557889999999998432 111 12233
Q ss_pred hcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc--cccccEEEEEEccCCCC
Q 005287 160 RRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSSTL 212 (704)
Q Consensus 160 k~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~--~~~k~vIVVLTK~D~l~ 212 (704)
..+|++++|++++.... -..+...+...... ....|+++|+||+|+..
T Consensus 66 --~~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (164)
T 1r8s_A 66 --QNTQGLIFVVDSNDRER---VNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115 (164)
T ss_dssp --TTCSEEEEEEETTCGGG---HHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred --ccCCEEEEEEECCCHHH---HHHHHHHHHHHHhchhhcCCeEEEEEECcCCcC
Confidence 36799999987764321 12233444444332 12479999999999863
No 66
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.24 E-value=3.1e-11 Score=113.44 Aligned_cols=120 Identities=18% Similarity=0.153 Sum_probs=75.0
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
...++|+|+|.+|||||||+|+|++.... ....+++..........++ ..+.|+||||....... .
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~--------~-- 74 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFV--SDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAM--------R-- 74 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCC--SSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCC--------H--
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCc--cccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHH--------H--
Confidence 45689999999999999999999987432 2344555544444455565 47889999997643211 1
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 155 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 155 Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
..+++ .+|++++|++++....-..-...+..+..... ....|+++|+||+|+..
T Consensus 75 -~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~ 128 (181)
T 2fn4_A 75 -EQYMR--AGHGFLLVFAINDRQSFNEVGKLFTQILRVKD-RDDFPVVLVGNKADLES 128 (181)
T ss_dssp -HHHHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-SSCCCEEEEEECGGGGG
T ss_pred -HHHHh--hCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence 12232 46999999877643210011122223322221 22479999999999864
No 67
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.23 E-value=2.7e-11 Score=112.66 Aligned_cols=118 Identities=17% Similarity=0.120 Sum_probs=72.0
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 155 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~I 155 (704)
..++|+|+|.+|||||||+|+|++...... ..+..+.+........++ ..+.++||||....... .
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~-----------~ 69 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPS-FITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTI-----------T 69 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC--------CCEEEEEEESSSCEEEEEEECCTTGGGTSCC-----------C
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCC-CCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhh-----------H
Confidence 358999999999999999999998764322 122333344444444454 47899999996433110 1
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 156 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 156 k~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
..+++ .+|++++|++++....-......+..+..... ...|+++|+||+|+.
T Consensus 70 ~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~ 121 (170)
T 1g16_A 70 TAYYR--GAMGIILVYDITDERTFTNIKQWFKTVNEHAN--DEAQLLLVGNKSDME 121 (170)
T ss_dssp HHHHT--TEEEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCT
T ss_pred HHHhc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCC
Confidence 12332 67999999877643210112234444444422 247999999999983
No 68
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.23 E-value=1.1e-11 Score=119.56 Aligned_cols=120 Identities=14% Similarity=0.061 Sum_probs=75.6
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCcc-ccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTE-TDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSV 155 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~-vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~I 155 (704)
...++|+|+|.+|||||||+|+|++..... .....+.|.....+.....+..+.|+||||...... . .
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~---~ 89 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHS--------L---A 89 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGG--------G---T
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHh--------h---h
Confidence 346899999999999999999999876432 233333444444444444556899999999643311 1 1
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 156 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 156 k~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
..+++ .+|++++|++++....-......+..+.... ....|+++|+||+|+.
T Consensus 90 ~~~~~--~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~--~~~~piiiv~NK~Dl~ 141 (192)
T 2fg5_A 90 PMYYR--GSAAAVIVYDITKQDSFYTLKKWVKELKEHG--PENIVMAIAGNKCDLS 141 (192)
T ss_dssp HHHHT--TCSEEEEEEETTCTHHHHHHHHHHHHHHHHS--CTTCEEEEEEECGGGG
T ss_pred HHhhc--cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC--CCCCcEEEEEECcccc
Confidence 12333 6799999987754321001122333343332 1247999999999986
No 69
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.23 E-value=3.8e-11 Score=115.18 Aligned_cols=122 Identities=19% Similarity=0.158 Sum_probs=75.1
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
...++|+|+|.+|||||||+|+|++....... .+..+.+........++ ..+.|+||||.... . ...
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~--~~~ 86 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRT-EATIGVDFRERAVDIDGERIKIQLWDTAGQERF--------R--KSM 86 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSC-CCCCSCCEEEEEEEETTEEEEEEEEECCCSHHH--------H--TTT
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCCcceEEEEEEEEECCEEEEEEEEECCCchhh--------h--hhh
Confidence 35689999999999999999999986544322 12223333333444455 58899999996321 1 011
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 155 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 155 Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
...+++ .+|++++|++++....-......+..+..... ....|+++|+||+|+..
T Consensus 87 ~~~~~~--~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 141 (189)
T 1z06_A 87 VQHYYR--NVHAVVFVYDMTNMASFHSLPAWIEECKQHLL-ANDIPRILVGNKCDLRS 141 (189)
T ss_dssp HHHHHT--TCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC-CSCCCEEEEEECTTCGG
T ss_pred hHHHhc--CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence 223343 67999999887643210112233444444421 23579999999999863
No 70
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.23 E-value=1.1e-10 Score=111.69 Aligned_cols=115 Identities=7% Similarity=0.006 Sum_probs=73.1
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
..++|+|+|.+|||||||+|+|++.......+..+ ........++..+.++||||...... . ...
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~---~~~ 79 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIG----SNVEEIVINNTRFLMWDIGGQESLRS--------S---WNT 79 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSC----SSCEEEEETTEEEEEEECCC----CG--------G---GHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCc----cceEEEEECCEEEEEEECCCCHhHHH--------H---HHH
Confidence 46999999999999999999999776543322112 12223345789999999999854321 0 112
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc--cccccEEEEEEccCCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSSTL 212 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~--~~~k~vIVVLTK~D~l~ 212 (704)
++ ..+|++++|++++... .-..+...+...... ....|+++|+||+|+..
T Consensus 80 ~~--~~~d~ii~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 131 (187)
T 1zj6_A 80 YY--TNTEFVIVVVDSTDRE---RISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 131 (187)
T ss_dssp HH--TTCCEEEEEEETTCTT---THHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT
T ss_pred Hh--cCCCEEEEEEeCCCHH---HHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC
Confidence 33 2679999998776432 112233444444332 23589999999999863
No 71
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.23 E-value=2.9e-11 Score=117.37 Aligned_cols=120 Identities=17% Similarity=0.138 Sum_probs=69.0
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccc-cCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTET-DAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSV 155 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~v-s~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~I 155 (704)
...++|+|+|.+|||||||+|+|++...... ....+.+.....+........+.|+||||.... ... .
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~---~ 94 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERF--------RSI---A 94 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTC--------HHH---H
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcch--------hhh---H
Confidence 4569999999999999999999998764322 222222222333332222357899999997543 111 2
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 156 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 156 k~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
..+++ .+|++++|++++....-......+..+..... ...|+++|+||+|+.
T Consensus 95 ~~~~~--~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 95 KSYFR--KADGVLLLYDVTCEKSFLNIREWVDMIEDAAH--ETVPIMLVGNKADIR 146 (199)
T ss_dssp HHHHH--HCSEEEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGH
T ss_pred HHHHh--hCCEEEEEEECCChHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccc
Confidence 23333 46999999877543211112233444444321 247999999999986
No 72
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.22 E-value=1.4e-11 Score=118.44 Aligned_cols=122 Identities=17% Similarity=0.148 Sum_probs=73.9
Q ss_pred CCCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCC-CccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 76 LDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQ-PATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 76 ~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~-~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
....++|+|+|.+|||||||+|+|++.......... +.+.....+.....+..+.|+||||...... .
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~--- 90 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRA--------I--- 90 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCT--------T---
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhh--------h---
Confidence 345689999999999999999999987754432211 1122222222222346789999999865421 1
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 155 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 155 Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
...+++ .+|++++|++++....-..-...+..+.... ....|+++|+||+|+..
T Consensus 91 ~~~~~~--~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~--~~~~piilv~nK~Dl~~ 144 (193)
T 2oil_A 91 TSAYYR--GAVGALLVFDLTKHQTYAVVERWLKELYDHA--EATIVVMLVGNKSDLSQ 144 (193)
T ss_dssp HHHHHT--TCCEEEEEEETTCHHHHHTHHHHHHHHHTTS--CTTCEEEEEEECGGGGG
T ss_pred hHHHhc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEECCCccc
Confidence 112332 6799999987754321001112333333221 23578999999999864
No 73
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.22 E-value=4.9e-11 Score=113.19 Aligned_cols=121 Identities=18% Similarity=0.120 Sum_probs=72.8
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEE-EEEeeEc-----------CeEEEEEECCCCCCcccch
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIR-EVKGSVN-----------GIKVTFIDTPGFLPSCVRN 144 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~-~~~~~~~-----------G~~v~LIDTPGl~d~~~~~ 144 (704)
...++|+|+|.+|||||||+|+|++....... .+..+.+.. ....... ...+.|+||||....
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---- 83 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKF-ITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERF---- 83 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSC-CCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGG----
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCc-ccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHH----
Confidence 45689999999999999999999986543221 111111222 2222333 358999999998432
Q ss_pred hhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 145 VKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 145 ~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
... ...+++ .+|++++|++++....-..-...+..+..... ....|+++|+||+|+..
T Consensus 84 ----~~~---~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 141 (195)
T 3bc1_A 84 ----RSL---TTAFFR--DAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY-SENPDIVLCGNKSDLED 141 (195)
T ss_dssp ----HHH---HHHTTT--TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSS-SSSCCEEEEEECTTCGG
T ss_pred ----HHH---HHHHHc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence 111 223343 67999999887543211111233444443321 13579999999999863
No 74
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.22 E-value=4.8e-11 Score=112.19 Aligned_cols=120 Identities=18% Similarity=0.132 Sum_probs=74.1
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 155 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~I 155 (704)
..++|+|+|.+|||||||+|+|++...... ..+..+.+.......+++ ..+.++||||.... ... .
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--------~~~---~ 73 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQ-LFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF--------RSL---R 73 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC-----CCSEEEEEEEEEETTEEEEEEEEECCCCGGG--------HHH---H
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCceeeeEEEEEEEECCEEEEEEEEeCCCchhh--------hhh---H
Confidence 468999999999999999999997653322 112223333344445566 48899999996322 111 1
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc--cccccEEEEEEccCCC
Q 005287 156 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSST 211 (704)
Q Consensus 156 k~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~--~~~k~vIVVLTK~D~l 211 (704)
..++ ..+|++++|++++....-..-...+..+...... ....|+++|+||+|+.
T Consensus 74 ~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 129 (177)
T 1wms_A 74 TPFY--RGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS 129 (177)
T ss_dssp GGGG--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred HHHH--hcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc
Confidence 2233 3679999998776432111122344445444321 1347999999999986
No 75
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.22 E-value=8.2e-11 Score=126.28 Aligned_cols=127 Identities=17% Similarity=0.194 Sum_probs=86.0
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
...++|+++|.+|||||||+|+|++.. ..++..+.+|...........+..+.++||||+.+..... .+......+.
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~~~~ 241 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAK-PEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISE--RNEIEKQAIL 241 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSC-CEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTT--SCHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhh--hhHHHHHHHH
Confidence 456899999999999999999999987 4455566778777766666778899999999997653221 1111112222
Q ss_pred HHHhcCCCCEEEEEEeccCccC-CC-CcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 157 KFIRRSPPDIVLYFERLDLISM-GF-SDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~t~-~~-~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
.+. ..+|++++|++++.... .. ....++..+...++ ..|+|+|+||+|+.
T Consensus 242 -~~~-~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~---~~piilV~NK~Dl~ 293 (357)
T 2e87_A 242 -ALR-YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK---DLPFLVVINKIDVA 293 (357)
T ss_dssp -GGG-GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT---TSCEEEEECCTTTC
T ss_pred -HHH-hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC---CCCEEEEEECcccC
Confidence 111 25799999977653321 11 12345555555443 58999999999986
No 76
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.22 E-value=2.8e-11 Score=117.04 Aligned_cols=122 Identities=16% Similarity=0.180 Sum_probs=72.5
Q ss_pred CCCCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHH
Q 005287 75 DLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIM 152 (704)
Q Consensus 75 ~~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il 152 (704)
+....++|+|+|.+|||||||+|+|++....... .+..+.+.......+++ ..+.|+||||.... ...
T Consensus 22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~--------~~~- 91 (192)
T 2il1_A 22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEAC-KSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF--------NSI- 91 (192)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGG--------HHH-
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCC-CCccceeEEEEEEEECCeEEEEEEEeCCCcHHH--------HHH-
Confidence 3445789999999999999999999987644332 12223344444444555 57899999996432 111
Q ss_pred HHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 153 LSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 153 ~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
...+++ .+|++++|++++....-..-...+..+..... ...|+++|+||+|+..
T Consensus 92 --~~~~~~--~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilV~NK~Dl~~ 145 (192)
T 2il1_A 92 --TSAYYR--SAKGIILVYDITKKETFDDLPKWMKMIDKYAS--EDAELLLVGNKLDCET 145 (192)
T ss_dssp --HHHHHH--HCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGG
T ss_pred --HHHHhc--CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccccc
Confidence 123333 56999999887643210111223344444321 2478999999999863
No 77
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.22 E-value=4.4e-11 Score=114.16 Aligned_cols=118 Identities=7% Similarity=-0.000 Sum_probs=75.8
Q ss_pred CCCCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 75 DLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 75 ~~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
.....++|+|+|.+|||||||+|+|++..........+.+. ....+++..+.|+||||...... .
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~----~~~~~~~~~~~i~Dt~G~~~~~~--------~--- 81 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNV----EEIVINNTRFLMWDIGGQESLRS--------S--- 81 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSC----EEEEETTEEEEEEEESSSGGGTC--------G---
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceee----EEEEECCEEEEEEECCCCHhHHH--------H---
Confidence 34457999999999999999999999987633333223222 23345789999999999854311 0
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc--cccccEEEEEEccCCCC
Q 005287 155 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSSTL 212 (704)
Q Consensus 155 Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~--~~~k~vIVVLTK~D~l~ 212 (704)
...++ ..+|++++|++++... .-..+...+...... ....|+++|+||+|+..
T Consensus 82 ~~~~~--~~~d~ii~v~D~~~~~---s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 136 (181)
T 2h17_A 82 WNTYY--TNTEFVIVVVDSTDRE---RISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 136 (181)
T ss_dssp GGGGG--TTCCEEEEEEETTCTT---THHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred HHHHh--ccCCEEEEEEECCCHH---HHHHHHHHHHHHHhChhhCCCeEEEEEECCCccc
Confidence 11233 2679999998776432 122333444444332 23579999999999863
No 78
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.22 E-value=4.7e-11 Score=114.64 Aligned_cols=120 Identities=9% Similarity=0.038 Sum_probs=75.2
Q ss_pred CCCCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 75 DLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 75 ~~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
+.....+|+|+|.+|||||||+|+|++.....+. ..+ |...........+..+.|+||||...... .
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~-~~~-t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~--- 79 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKH-ITA-TVGYNVETFEKGRVAFTVFDMGGAKKFRG--------L--- 79 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC----C-CCC-CSSEEEEEEEETTEEEEEEEECCSGGGGG--------G---
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccc-ccc-ccceeEEEEEeCCEEEEEEECCCCHhHHH--------H---
Confidence 4456789999999999999999999998765532 122 23333334457889999999999854311 0
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccc---------ccccEEEEEEccCCCC
Q 005287 155 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA---------IWFNTILVMTHSSSTL 212 (704)
Q Consensus 155 Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~---------~~k~vIVVLTK~D~l~ 212 (704)
...++ ..+|++++|++++.... -..+..++...+... ...|+|+|+||+|+..
T Consensus 80 ~~~~~--~~~d~ii~v~D~~~~~s---~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 141 (199)
T 4bas_A 80 WETYY--DNIDAVIFVVDSSDHLR---LCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAG 141 (199)
T ss_dssp GGGGC--TTCSEEEEEEETTCGGG---HHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTT
T ss_pred HHHHH--hcCCEEEEEEECCcHHH---HHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCC
Confidence 11233 36899999988764321 112333444433221 1579999999999874
No 79
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.22 E-value=3.5e-11 Score=111.69 Aligned_cols=118 Identities=18% Similarity=0.061 Sum_probs=73.7
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 155 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~I 155 (704)
..++|+|+|.+|||||||+|+|++....... .+..+.+........++ ..+.++||||...... . .
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~---~ 71 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDY-KKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDA--------I---T 71 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCS-SCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTC--------C---C
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCC-CCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHH--------H---H
Confidence 4689999999999999999999987543221 12222334444444444 4789999999643211 0 1
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 156 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 156 k~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
..+++ .+|++++|++++....-..-...+..+.... ...|+++|+||+|+..
T Consensus 72 ~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~ 123 (168)
T 1z2a_A 72 KAYYR--GAQACVLVFSTTDRESFEAISSWREKVVAEV---GDIPTALVQNKIDLLD 123 (168)
T ss_dssp HHHHT--TCCEEEEEEETTCHHHHHTHHHHHHHHHHHH---CSCCEEEEEECGGGGG
T ss_pred HHHhc--CCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccCc
Confidence 12332 6799999987764321011223344444432 3479999999999864
No 80
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.22 E-value=7.3e-11 Score=111.78 Aligned_cols=119 Identities=17% Similarity=0.164 Sum_probs=73.0
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 155 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~I 155 (704)
..++|+|+|.+|||||||+|+|++.... ....+++..........++ ..+.|+||||........
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~----------- 71 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFV--DSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFP----------- 71 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCC-----------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCC--CCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHH-----------
Confidence 4689999999999999999999965532 2333444444444445566 567899999986542110
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 156 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 156 k~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
..++ ..+|++++|.+++....-..-...+..+.+.+. ....|+++|+||+|+..
T Consensus 72 ~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~ 125 (181)
T 3t5g_A 72 QTYS--IDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG-KVQIPIMLVGNKKDLHM 125 (181)
T ss_dssp GGGT--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTT
T ss_pred HHHH--hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchh
Confidence 0122 267999999877643210011122333333322 22479999999999863
No 81
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.22 E-value=2.4e-11 Score=116.66 Aligned_cols=118 Identities=10% Similarity=0.073 Sum_probs=76.3
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
...++|+|+|.+|||||||+|+|++...+... . ..|.........+++..+.|+||||...... . ..
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~-~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~---~~ 85 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQN-I-LPTIGFSIEKFKSSSLSFTVFDMSGQGRYRN--------L---WE 85 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSS-C-CCCSSEEEEEEECSSCEEEEEEECCSTTTGG--------G---GG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCC-c-CCccceeEEEEEECCEEEEEEECCCCHHHHH--------H---HH
Confidence 45799999999999999999999987633322 2 2344455555567789999999999754321 0 11
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccc----ccccEEEEEEccCCCC
Q 005287 157 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA----IWFNTILVMTHSSSTL 212 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~----~~k~vIVVLTK~D~l~ 212 (704)
.+++ .+|++++|++++.... -..+...+....... ...|+++|+||+|+..
T Consensus 86 ~~~~--~~d~ii~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 140 (190)
T 2h57_A 86 HYYK--EGQAIIFVIDSSDRLR---MVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD 140 (190)
T ss_dssp GGGG--GCSEEEEEEETTCHHH---HHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT
T ss_pred HHHh--cCCEEEEEEECCCHHH---HHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc
Confidence 2333 5799999987754321 112223333332211 3579999999999863
No 82
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.21 E-value=6.3e-11 Score=115.87 Aligned_cols=117 Identities=15% Similarity=0.173 Sum_probs=73.1
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEc---CeEEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVN---GIKVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~---G~~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
..++|+|+|.+|||||||+|+|++..... ...+++..... ..++ +..+.|+||||.... ...+
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~-------~~~~--- 71 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRD--TQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESL-------RFQL--- 71 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCC--BCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHH-------HHHH---
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccc--ccCCcceeeEE--EEecCCCccEEEEEECCCChhH-------HHHH---
Confidence 46899999999999999999999876322 22333433333 3444 678999999998422 0111
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhc----ccccccEEEEEEccCCCC
Q 005287 155 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFG----TAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 155 Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG----~~~~k~vIVVLTK~D~l~ 212 (704)
...+++ .+|++++|+++..... ......+.+...+. .....|+++|.||+|+..
T Consensus 72 ~~~~~~--~~~~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 129 (214)
T 2fh5_B 72 LDRFKS--SARAVVFVVDSAAFQR--EVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 129 (214)
T ss_dssp HHHHGG--GEEEEEEEEETTTHHH--HHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT
T ss_pred HHHHHh--hCCEEEEEEECCCcCH--HHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCC
Confidence 223343 5799999987754211 12233343433321 123579999999999874
No 83
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.21 E-value=5.1e-11 Score=125.45 Aligned_cols=125 Identities=11% Similarity=0.126 Sum_probs=82.6
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeE-cCeEEEEEECCCCCCcccchhhhhHHHH-HHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSV-NGIKVTFIDTPGFLPSCVRNVKRNRKIM-LSV 155 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~-~G~~v~LIDTPGl~d~~~~~~~~n~~il-~~I 155 (704)
..++|+|+|.+|||||||+|.+++.....++...++|.........+ ++.++.|+||||.... ..... ...
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~~ 74 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF-------MENYFTKQK 74 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH-------HHHHHTTTH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHH-------hhhhhhhHH
Confidence 35899999999999999999999986566655667787777666554 5789999999997422 01111 111
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcH-HHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 156 KKFIRRSPPDIVLYFERLDLISMGFSDF-PLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 156 k~~ik~~~~dvVL~Vi~ld~~t~~~~D~-~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
..+++ .+|++++|++++.... ..+. .+...+..........|+++|+||+|+..
T Consensus 75 ~~~~~--~ad~vi~V~D~t~~~s-~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~ 129 (307)
T 3r7w_A 75 DHIFQ--MVQVLIHVFDVESTEV-LKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQ 129 (307)
T ss_dssp HHHHT--TCSEEEEEEETTCSCH-HHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred HHHhc--cCCEEEEEEECCChhh-HHHHHHHHHHHHHHHHhCCCCeEEEEEecccccc
Confidence 22332 6899999987764321 1121 22333433322223489999999999873
No 84
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.21 E-value=5.1e-11 Score=114.30 Aligned_cols=120 Identities=14% Similarity=0.024 Sum_probs=73.8
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCcccc-CCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETD-AFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs-~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
..++|+|+|.+|||||||+|+|++....... ...+.+.....+.....+..+.|+||||....... ..
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-----------~~ 89 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTI-----------TT 89 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCS-----------GG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhh-----------HH
Confidence 4589999999999999999999987644321 11122222233332223458899999997543211 11
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 157 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
.++ ..+|++++|++++....-......+..+.... ....|+++|+||+|+..
T Consensus 90 ~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~ 141 (189)
T 2gf9_A 90 AYY--RGAMGFLLMYDIANQESFAAVQDWATQIKTYS--WDNAQVILVGNKCDLED 141 (189)
T ss_dssp GGG--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGG
T ss_pred Hhc--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECccccc
Confidence 233 26799999988754321111223444444432 12479999999999863
No 85
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.20 E-value=1.9e-11 Score=114.02 Aligned_cols=120 Identities=12% Similarity=0.108 Sum_probs=71.0
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
...++|+|+|.+|||||||+|++++...... ..+..+.+........++ ..+.++||||..... ..
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~--- 71 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDK-HITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFH--------AL--- 71 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSS-CCCCCSCEEEEEEEESSSCEEEEEEEECCCC-----------------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcC-CCCccceEEEEEEEEECCEEEEEEEEECCCcHhhh--------hh---
Confidence 3468999999999999999999997764322 122223333333334444 467889999964321 10
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 155 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 155 Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
...++ ..+|++++|++++....-......+..+....+ ...|+++|+||+|+..
T Consensus 72 ~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~ 125 (170)
T 1z08_A 72 GPIYY--RDSNGAILVYDITDEDSFQKVKNWVKELRKMLG--NEICLCIVGNKIDLEK 125 (170)
T ss_dssp -CCSS--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHG--GGSEEEEEEECGGGGG
T ss_pred HHHHh--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEECccccc
Confidence 11122 267999999877543210011223334444332 2478999999999864
No 86
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.20 E-value=8.9e-12 Score=120.02 Aligned_cols=122 Identities=16% Similarity=0.098 Sum_probs=76.7
Q ss_pred CCCCCeEEEEEeCCCCcHHHHHHHHhCCCCccc-cCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHH
Q 005287 75 DLDFSIRILVLGKTGVGKSATINSIFDQTKTET-DAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIML 153 (704)
Q Consensus 75 ~~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~v-s~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~ 153 (704)
..+..++|+|+|.+|||||||+|+|++...... ....+.+.....+.....+..+.|+||||.... ..
T Consensus 19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--------~~--- 87 (191)
T 3dz8_A 19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERY--------RT--- 87 (191)
T ss_dssp EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHC--------HH---
T ss_pred ccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHH--------HH---
Confidence 344578999999999999999999998653322 111223334444444445678999999994211 11
Q ss_pred HHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 154 SVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 154 ~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
....+++ .+|++++|++++....-.....++..+.... ....|+++|+||+|+.
T Consensus 88 ~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~ 141 (191)
T 3dz8_A 88 ITTAYYR--GAMGFILMYDITNEESFNAVQDWATQIKTYS--WDNAQVILVGNKCDME 141 (191)
T ss_dssp HHHHHHT--TCCEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCG
T ss_pred HHHHHHc--cCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECCCCc
Confidence 1223443 6799999988764321111223444454432 1247999999999985
No 87
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.20 E-value=4.6e-11 Score=128.03 Aligned_cols=129 Identities=19% Similarity=0.146 Sum_probs=73.3
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccc-----cCCCC----------------------ccce---------------
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTET-----DAFQP----------------------ATDC--------------- 116 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~v-----s~~~~----------------------tT~~--------------- 116 (704)
..+|+|+|.+|||||||+|+|+|...... +..+. +|.+
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g 110 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 110 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhcc
Confidence 47999999999999999999999876522 21121 1111
Q ss_pred --------EEEEEe-eEcCeEEEEEECCCCCCcccchh--hhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHH
Q 005287 117 --------IREVKG-SVNGIKVTFIDTPGFLPSCVRNV--KRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPL 185 (704)
Q Consensus 117 --------~~~~~~-~~~G~~v~LIDTPGl~d~~~~~~--~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~l 185 (704)
...... ...+.+++||||||+......++ ...+.+...+..++. ...+++|+|++.+.. ....+.
T Consensus 111 ~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiL~v~~a~~~-~~~~~~-- 186 (353)
T 2x2e_A 111 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT-KENCLILAVSPANSD-LANSDA-- 186 (353)
T ss_dssp TTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHT-STTEEEEEEEETTSC-GGGCHH--
T ss_pred cCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHc-CCCeEEEEEecCCCc-cchhHH--
Confidence 000000 11246899999999986432110 111233344455664 244577777665431 111232
Q ss_pred HHHHHHHhcccccccEEEEEEccCCCCC
Q 005287 186 LKLMTEVFGTAIWFNTILVMTHSSSTLP 213 (704)
Q Consensus 186 Lk~L~~~fG~~~~k~vIVVLTK~D~l~p 213 (704)
++.+... . ....++|+|+||+|+..+
T Consensus 187 ~~i~~~~-~-~~~~~~i~V~NK~Dl~~~ 212 (353)
T 2x2e_A 187 LKVAKEV-D-PQGQRTIGVITKLDLMDE 212 (353)
T ss_dssp HHHHHHH-C-TTCTTEEEEEECGGGSCT
T ss_pred HHHHHHh-C-cCCCceEEEeccccccCc
Confidence 2223332 1 125799999999998743
No 88
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.20 E-value=4.1e-11 Score=116.47 Aligned_cols=120 Identities=13% Similarity=0.126 Sum_probs=71.8
Q ss_pred CCCCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEe--eEcCeEEEEEECCCCCCcccchhhhhHHHH
Q 005287 75 DLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKG--SVNGIKVTFIDTPGFLPSCVRNVKRNRKIM 152 (704)
Q Consensus 75 ~~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~--~~~G~~v~LIDTPGl~d~~~~~~~~n~~il 152 (704)
+....++|+|+|.+|||||||+|+|++...... ..+++........ ...+..+.|+||||.......
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------- 88 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEG--YDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSIL--------- 88 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSC--CCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCC---------
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCC--CCCccceEEEEEEEECCEEEEEEEEECCCccchHHH---------
Confidence 345679999999999999999999998775432 2233333222222 234578899999997654211
Q ss_pred HHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc--cccccEEEEEEccCCCC
Q 005287 153 LSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSSTL 212 (704)
Q Consensus 153 ~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~--~~~k~vIVVLTK~D~l~ 212 (704)
...++ ..+|++++|++++.... -..+..++...... ....|+++|+||+|+..
T Consensus 89 --~~~~~--~~~d~~i~v~d~~~~~s---~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 143 (201)
T 3oes_A 89 --PYSFI--IGVHGYVLVYSVTSLHS---FQVIESLYQKLHEGHGKTRVPVVLVGNKADLSP 143 (201)
T ss_dssp --CGGGT--TTCCEEEEEEETTCHHH---HHHHHHHHHHHHC-----CCCEEEEEECTTCGG
T ss_pred --HHHHH--hcCCEEEEEEeCCCHHH---HHHHHHHHHHHHHhcCCCCCCEEEEEECccCcc
Confidence 01223 26799999987764321 11222233332221 12479999999999874
No 89
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.19 E-value=1.3e-11 Score=133.25 Aligned_cols=130 Identities=21% Similarity=0.273 Sum_probs=64.3
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCC------CccceEE--EEEeeEcCe--EEEEEECCCCCCcccchh-
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQ------PATDCIR--EVKGSVNGI--KVTFIDTPGFLPSCVRNV- 145 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~------~tT~~~~--~~~~~~~G~--~v~LIDTPGl~d~~~~~~- 145 (704)
+..++|+|+|.+|+|||||+|+|++...+.....+ ..|.... .+.....+. .+.|+||||+++......
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 35689999999999999999999998765443211 1233222 222333444 789999999976532110
Q ss_pred --hhhHHHHHHHHHHH-----------hcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 146 --KRNRKIMLSVKKFI-----------RRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 146 --~~n~~il~~Ik~~i-----------k~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
.....+...+..++ ...++|+++|++..........+..+++.+ . ...|+|+|+||+|+..
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~--~~~piIlV~NK~Dl~~ 188 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----H--NKVNIVPVIAKADTLT 188 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----C--S-SCEEEEEECCSSSC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----c--cCCCEEEEEECCCCCC
Confidence 01111111122222 223568899987543333222333334333 2 2479999999999874
No 90
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.19 E-value=1.6e-10 Score=112.04 Aligned_cols=116 Identities=10% Similarity=0.019 Sum_probs=73.2
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
...++|+|+|.+|||||||+|++++...... ..|...........+..+.++||||...... . ..
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~---~~ 91 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTT----IPTIGFNVETVEYKNICFTVWDVGGQDKIRP--------L---WR 91 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEEE----EEETTEEEEEEEETTEEEEEEECC-----CT--------T---HH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCcccc----CCcCceeEEEEEECCEEEEEEECCCCHhHHH--------H---HH
Confidence 3469999999999999999999998764322 1233344444566889999999999854311 1 11
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccc--ccccEEEEEEccCCCC
Q 005287 157 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA--IWFNTILVMTHSSSTL 212 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~--~~k~vIVVLTK~D~l~ 212 (704)
.+++ .+|++++|++++.... -..+...+....... ...|+++|+||+|+..
T Consensus 92 ~~~~--~~d~iilv~D~~~~~s---~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 144 (192)
T 2b6h_A 92 HYFQ--NTQGLIFVVDSNDRER---VQESADELQKMLQEDELRDAVLLVFANKQDMPN 144 (192)
T ss_dssp HHHH--TCCEEEEEEETTCGGG---HHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred HHhc--cCCEEEEEEECCCHHH---HHHHHHHHHHHhcccccCCCeEEEEEECCCCCC
Confidence 2333 6799999987754321 122334444443221 2479999999999863
No 91
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.19 E-value=3.1e-10 Score=108.80 Aligned_cols=115 Identities=16% Similarity=0.174 Sum_probs=75.4
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
..++|+++|.+|||||||+|.|++.....+.+ |.........+++..+.++||||.... ... ...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~----t~g~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~---~~~ 79 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITP----TQGFNIKSVQSQGFKLNVWDIGGQRKI--------RPY---WRS 79 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEE----ETTEEEEEEEETTEEEEEEECSSCGGG--------HHH---HHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcccC----cCCeEEEEEEECCEEEEEEECCCCHHH--------HHH---HHH
Confidence 46899999999999999999999986543322 222222334557899999999997432 111 223
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc--cccccEEEEEEccCCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSSTL 212 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~--~~~k~vIVVLTK~D~l~ 212 (704)
+++ .+|++++|.+++.... -..+...+.+.+.. ....|+++|.||+|+..
T Consensus 80 ~~~--~~~~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 131 (181)
T 1fzq_A 80 YFE--NTDILIYVIDSADRKR---FEETGQELTELLEEEKLSCVPVLIFANKQDLLT 131 (181)
T ss_dssp HHT--TCSEEEEEEETTCGGG---HHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTT
T ss_pred HhC--CCCEEEEEEECcCHHH---HHHHHHHHHHHHhChhhcCCCEEEEEECcCccc
Confidence 343 6799999987654321 11233444444332 13579999999999863
No 92
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.19 E-value=1e-10 Score=113.64 Aligned_cols=120 Identities=16% Similarity=0.114 Sum_probs=74.8
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
...++|+|+|.+|||||||+|+|++...... ..+..+.+.......+++ ..+.|+||||.......
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------- 73 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTND-YISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTI----------- 73 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTT-CCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCC-----------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHH-----------
Confidence 3468999999999999999999998764332 122233344433444555 47899999997543211
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 155 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 155 Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
...++ ..+|++++|++++....-......+..+..... ...|+++|+||+|+..
T Consensus 74 ~~~~~--~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~ 127 (206)
T 2bcg_Y 74 TSSYY--RGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT--STVLKLLVGNKCDLKD 127 (206)
T ss_dssp CGGGG--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECTTCTT
T ss_pred HHHhc--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCcc
Confidence 11223 267999999877643210011123333433321 2478999999999874
No 93
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.18 E-value=4.2e-11 Score=117.48 Aligned_cols=121 Identities=18% Similarity=0.173 Sum_probs=72.7
Q ss_pred CCCCeEEEEEeCCCCcHHHHHHHHhCCCCccc-cCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHH
Q 005287 76 LDFSIRILVLGKTGVGKSATINSIFDQTKTET-DAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIM 152 (704)
Q Consensus 76 ~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~v-s~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il 152 (704)
....++|+|+|.+|||||||+|+|++...... ....+.+....... ...+ ..+.|+||||........
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~~~l~Dt~G~~~~~~~~-------- 78 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFL-DDQGNVIKFNVWDTAGQEKKAVLK-------- 78 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEE-BTTSCEEEEEEEEECSGGGTSCCC--------
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEE-eCCCcEEEEEEEecCCchhhchHH--------
Confidence 34579999999999999999999997664332 11112222222222 1122 679999999975432110
Q ss_pred HHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 153 LSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 153 ~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
..++ ..+|++++|++++...........+..+....+. ..|+++|+||+|+..
T Consensus 79 ---~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~ 131 (218)
T 4djt_A 79 ---DVYY--IGASGAILFFDVTSRITCQNLARWVKEFQAVVGN--EAPIVVCANKIDIKN 131 (218)
T ss_dssp ---HHHH--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCS--SSCEEEEEECTTCC-
T ss_pred ---HHHh--hcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCcc
Confidence 1122 2679999998876432111222344555554332 379999999999863
No 94
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.18 E-value=1.5e-11 Score=118.69 Aligned_cols=122 Identities=12% Similarity=0.122 Sum_probs=49.8
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccc-eEEEEEeeEc----CeEEEEEECCCCCCcccchhhhhHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATD-CIREVKGSVN----GIKVTFIDTPGFLPSCVRNVKRNRKIM 152 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~-~~~~~~~~~~----G~~v~LIDTPGl~d~~~~~~~~n~~il 152 (704)
..++|+|+|.+|||||||+|+|++..........+++. +.......+. ...+.|+||||.... .
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~--- 87 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLY--------K--- 87 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHH--------H---
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHH--------H---
Confidence 46899999999999999999999874333333334432 3333444455 358999999998321 1
Q ss_pred HHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc-cccccEEEEEEccCCCC
Q 005287 153 LSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT-AIWFNTILVMTHSSSTL 212 (704)
Q Consensus 153 ~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~-~~~k~vIVVLTK~D~l~ 212 (704)
.....++ ..+|++++|++++....-......+..+....+. ....|+++|+||+|+..
T Consensus 88 ~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 88 EQISQYW--NGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP 146 (208)
T ss_dssp HHHSTTC--CCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred HHHHHHH--hhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence 1112223 3679999998875432100112233344333210 13579999999999874
No 95
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.18 E-value=1.2e-10 Score=110.40 Aligned_cols=121 Identities=18% Similarity=0.163 Sum_probs=74.7
Q ss_pred CCCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeE--EEEEECCCCCCcccchhhhhHHHHH
Q 005287 76 LDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIK--VTFIDTPGFLPSCVRNVKRNRKIML 153 (704)
Q Consensus 76 ~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~--v~LIDTPGl~d~~~~~~~~n~~il~ 153 (704)
....++|+|+|.+|||||||+|+|++..... ...+++..........++.. +.++||||...... ..
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~- 83 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVD--DYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSA--------MR- 83 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCS--------SH-
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHH--------HH-
Confidence 3457999999999999999999999764332 23344444334444556654 55699999754321 11
Q ss_pred HHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 154 SVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 154 ~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
..+++ .+|++++|++++....-..-...+..+..... ....|+++|+||+|+..
T Consensus 84 --~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~ 137 (183)
T 3kkq_A 84 --EQYMR--TGDGFLIVYSVTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDLMH 137 (183)
T ss_dssp --HHHHH--HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-SSCCCEEEEEECTTCST
T ss_pred --HHHHh--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECCCchh
Confidence 12332 46999999887643210112233344433222 23478999999999864
No 96
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.18 E-value=3.7e-11 Score=115.23 Aligned_cols=119 Identities=12% Similarity=0.180 Sum_probs=70.6
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccc-cCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTET-DAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSV 155 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~v-s~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~I 155 (704)
...++|+|+|.+|||||||+|+|++...... ....+++. ....+..+.++||||....... ....+
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~l~Dt~G~~~~~~~-------~~~~~ 112 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA------ADYDGSGVTLVDFPGHVKLRYK-------LSDYL 112 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------------CCCCTTCSEEEETTCCBSSCC-------HHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee------eeecCCeEEEEECCCCchHHHH-------HHHHH
Confidence 4678999999999999999999998764322 11112111 1125678899999999765221 11112
Q ss_pred HHHHhcCCCCEEEEEEecc-CccCCCCcHHHHHHHHHHhc-----ccccccEEEEEEccCCCCC
Q 005287 156 KKFIRRSPPDIVLYFERLD-LISMGFSDFPLLKLMTEVFG-----TAIWFNTILVMTHSSSTLP 213 (704)
Q Consensus 156 k~~ik~~~~dvVL~Vi~ld-~~t~~~~D~~lLk~L~~~fG-----~~~~k~vIVVLTK~D~l~p 213 (704)
...+. .+|++++|++++ ... .-..+..++...+. .....|+++|+||+|+..+
T Consensus 113 ~~~~~--~~~~~i~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 113 KTRAK--FVKGLIFMVDSTVDPK---KLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 171 (193)
T ss_dssp HHHGG--GEEEEEEEEETTCCHH---HHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred Hhhcc--cCCEEEEEEECCCCch---hHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence 22222 469999998776 221 11122233333322 1125799999999998753
No 97
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.18 E-value=6.6e-11 Score=113.19 Aligned_cols=119 Identities=14% Similarity=0.127 Sum_probs=71.2
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCe--EEEEEECCCCCCcccchhhhhHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIMLSV 155 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~--~v~LIDTPGl~d~~~~~~~~n~~il~~I 155 (704)
..++|+|+|.+|||||||+|+|++..... ...+++...........+. .+.|+||||..... . ..
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~---~~ 86 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVD--EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS--------A---MR 86 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCC-------------------
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCcc--ccCCccceEEEEEEEECCEEEEEEEEECCChHHHH--------H---HH
Confidence 46899999999999999999999875332 2334444444444455554 58999999974321 1 11
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 156 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 156 k~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
..++ ..+|++++|.+++....-......+..+.... .....|+++|+||+|+..
T Consensus 87 ~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 87 DQYM--RTGEGFLCVFAINNSKSFADINLYREQIKRVK-DSDDVPMVLVGNKCDLPT 140 (190)
T ss_dssp ---C--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHH-TCSCCCEEEEEECTTCSC
T ss_pred HHhh--CcCCEEEEEEECcCHHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECCcCCc
Confidence 2233 26799999987764321001112333343332 122479999999999874
No 98
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.17 E-value=2.5e-11 Score=115.92 Aligned_cols=118 Identities=19% Similarity=0.146 Sum_probs=70.9
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCcccc-CCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETD-AFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs-~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
..++|+|+|.+|||||||+|+|++....... ...+.+.....+.....+..+.|+||||...... . ..
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~---~~ 82 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRT--------L---TP 82 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCC--------S---HH
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhh--------h---hH
Confidence 4589999999999999999999987643221 1111222223233222346789999999754321 0 12
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc--cccccEEEEEEccCCC
Q 005287 157 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSST 211 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~--~~~k~vIVVLTK~D~l 211 (704)
.+++ .+|++++|++++.... ...+..++...... ....|+++|+||+|+.
T Consensus 83 ~~~~--~~d~ii~v~d~~~~~s---~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~ 134 (195)
T 1x3s_A 83 SYYR--GAQGVILVYDVTRRDT---FVKLDNWLNELETYCTRNDIVNMLVGNKIDKE 134 (195)
T ss_dssp HHHT--TCCEEEEEEETTCHHH---HHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS
T ss_pred HHhc--cCCEEEEEEECcCHHH---HHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc
Confidence 2333 6799999987754321 11122233333221 1357999999999984
No 99
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.17 E-value=5.4e-11 Score=115.90 Aligned_cols=119 Identities=18% Similarity=0.143 Sum_probs=70.3
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
+..++|+|+|.+|||||||+|+|++....... .+..+.+........++ ..+.|+||||...... .
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~-----------~ 90 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDS-NHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRS-----------V 90 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCTTHHHHSC-----------C
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccC-CCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHH-----------H
Confidence 45689999999999999999999987644332 12223333334444555 6899999999632210 1
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 155 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 155 Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
...+++ .+|++++|++++....-..-...+..+..... ...|+++|+||+|+.
T Consensus 91 ~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~ 143 (200)
T 2o52_A 91 TRSYYR--GAAGALLVYDITSRETYNSLAAWLTDARTLAS--PNIVVILCGNKKDLD 143 (200)
T ss_dssp CHHHHT--TCSEEEEEEETTCHHHHHTHHHHHHHHHHHTC--TTCEEEEEEECGGGG
T ss_pred HHHHhc--cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCCcc
Confidence 122333 67999999877643210111233334443322 347899999999986
No 100
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.17 E-value=3e-11 Score=114.49 Aligned_cols=116 Identities=13% Similarity=0.064 Sum_probs=73.4
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
...++|+|+|.+|||||||+|++++.......+..+ .......+.+..+.++||||....... ..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~i~Dt~G~~~~~~~-----------~~ 80 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIG----FNVETLSYKNLKLNVWDLGGQTSIRPY-----------WR 80 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTT----CCEEEEEETTEEEEEEEEC----CCTT-----------GG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCc----cceEEEEECCEEEEEEECCCCHhHHHH-----------HH
Confidence 357999999999999999999999776533322212 222334557899999999998653210 01
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc--cccccEEEEEEccCCCC
Q 005287 157 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSSTL 212 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~--~~~k~vIVVLTK~D~l~ 212 (704)
.++ ..+|++++|++++... .-..+...+...... ....|+++|+||+|+..
T Consensus 81 ~~~--~~~d~ii~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 133 (183)
T 1moz_A 81 CYY--ADTAAVIFVVDSTDKD---RMSTASKELHLMLQEEELQDAALLVFANKQDQPG 133 (183)
T ss_dssp GTT--TTEEEEEEEEETTCTT---THHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTT
T ss_pred HHh--ccCCEEEEEEECCCHH---HHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCC
Confidence 122 2679999998765432 122344455555432 24589999999999863
No 101
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.16 E-value=1.4e-10 Score=110.93 Aligned_cols=115 Identities=15% Similarity=0.059 Sum_probs=75.8
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
..++|+|+|.+|||||||+|+|++....... + |...........+..+.++||||....... ...
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~---~-t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~-----------~~~ 85 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTV---P-TVGVNLETLQYKNISFEVWDLGGQTGVRPY-----------WRC 85 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEEEC---S-STTCCEEEEEETTEEEEEEEECCSSSSCCC-----------CSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCcC---C-CCceEEEEEEECCEEEEEEECCCCHhHHHH-----------HHH
Confidence 4699999999999999999999877644322 2 222333344557899999999998643211 011
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccc--ccccEEEEEEccCCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA--IWFNTILVMTHSSSTL 212 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~--~~k~vIVVLTK~D~l~ 212 (704)
++ ..+|++++|++++... .-..+...+...+... ...|+++|+||+|+..
T Consensus 86 ~~--~~~d~ii~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 137 (189)
T 2x77_A 86 YF--SDTDAVIYVVDSTDRD---RMGVAKHELYALLDEDELRKSLLLIFANKQDLPD 137 (189)
T ss_dssp SS--TTCCEEEEEEETTCCT---THHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTT
T ss_pred Hh--hcCCEEEEEEeCCCHH---HHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcC
Confidence 22 2679999998776432 1123344444443321 2579999999999864
No 102
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.16 E-value=2.3e-10 Score=122.63 Aligned_cols=126 Identities=21% Similarity=0.178 Sum_probs=74.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEE-----------------------------------------
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIRE----------------------------------------- 119 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~----------------------------------------- 119 (704)
+|+|+|.+|||||||+|+|+|......+.. .+|+....
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~~~lp~~~~-~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE 114 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTSCCSCCCSS-SCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhCCCcCCCCCC-cccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999775443221 12211111
Q ss_pred -------------EE-eeEcCeEEEEEECCCCCCcccch--hhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcH
Q 005287 120 -------------VK-GSVNGIKVTFIDTPGFLPSCVRN--VKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDF 183 (704)
Q Consensus 120 -------------~~-~~~~G~~v~LIDTPGl~d~~~~~--~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~ 183 (704)
.. ....+..++||||||+......+ ......+...+..++. .+|++++|+....... ...
T Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~--~~d~iilvv~~~~~~~--~~~ 190 (360)
T 3t34_A 115 TGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIE--KPNCIILAISPANQDL--ATS 190 (360)
T ss_dssp SCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHH--SSSEEEEEEEETTSCG--GGC
T ss_pred cCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhh--cCCeEEEEeecccCCc--CCH
Confidence 00 01124578999999998753211 0122333444555664 6798888865432211 111
Q ss_pred HHHHHHHHHhcccccccEEEEEEccCCCCC
Q 005287 184 PLLKLMTEVFGTAIWFNTILVMTHSSSTLP 213 (704)
Q Consensus 184 ~lLk~L~~~fG~~~~k~vIVVLTK~D~l~p 213 (704)
..++.+... . ....++|+|+||+|++.+
T Consensus 191 ~~~~l~~~~-~-~~~~~~i~V~nK~Dl~~~ 218 (360)
T 3t34_A 191 DAIKISREV-D-PSGDRTFGVLTKIDLMDK 218 (360)
T ss_dssp HHHHHHHHS-C-TTCTTEEEEEECGGGCCT
T ss_pred HHHHHHHHh-c-ccCCCEEEEEeCCccCCC
Confidence 233333332 2 125799999999999854
No 103
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.16 E-value=1.5e-10 Score=111.88 Aligned_cols=118 Identities=15% Similarity=0.222 Sum_probs=73.7
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 155 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~I 155 (704)
..++|+|+|.+|||||||+|+|++...... ..+++..........++ ..+.|+||||.... .. .
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~----~ 92 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWE--YDPTLESTYRHQATIDDEVVSMEILDTAGQEDT--------IQ----R 92 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSC--CCTTCCEEEEEEEEETTEEEEEEEEECCCCCCC--------HH----H
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcc--cCCCCCceEEEEEEECCEEEEEEEEECCCCCcc--------cc----h
Confidence 469999999999999999999998764332 22333322223334444 57899999998651 11 1
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 156 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 156 k~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
..+++ .+|++++|++++....-..-...+..+..... ....|+++|+||+|+..
T Consensus 93 ~~~~~--~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~ 146 (196)
T 2atv_A 93 EGHMR--WGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGNKADLDH 146 (196)
T ss_dssp HHHHH--HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSCCCEEEEEECGGGGG
T ss_pred hhhhc--cCCEEEEEEECcCHHHHHHHHHHHHHHHHhhC-CCCCcEEEEEECccccc
Confidence 12333 45999999887643210111233444444322 23578999999999863
No 104
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.16 E-value=9.9e-11 Score=112.67 Aligned_cols=120 Identities=16% Similarity=0.113 Sum_probs=73.9
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
...++|+|+|.+|||||||+|+|++........ +..+.+........++ ..+.|+||||.......
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------- 86 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSI----------- 86 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC------CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCC-----------
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCC-CcccceeEEEEEEECCEEEEEEEEECCCchhhhhh-----------
Confidence 456899999999999999999999876544322 1223333333344455 58899999996433110
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 155 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 155 Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
...+++ .+|++++|++++....-..-...+..+.... ....|+++|+||+|+..
T Consensus 87 ~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~--~~~~piilv~nK~Dl~~ 140 (191)
T 2a5j_A 87 TRSYYR--GAAGALLVYDITRRETFNHLTSWLEDARQHS--SSNMVIMLIGNKSDLES 140 (191)
T ss_dssp CHHHHT--TCSEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGG
T ss_pred HHHHhc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECcccCC
Confidence 112332 6799999988764321011123444444432 12478999999999863
No 105
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.16 E-value=6.7e-11 Score=111.22 Aligned_cols=121 Identities=12% Similarity=0.051 Sum_probs=69.4
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEc---CeEEEEEECCCCCCcccchhhhhHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVN---GIKVTFIDTPGFLPSCVRNVKRNRKIML 153 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~---G~~v~LIDTPGl~d~~~~~~~~n~~il~ 153 (704)
...++|+|+|.+|||||||+|+|++....... .+..+.+.......++ ...+.++||||..... .
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~--- 73 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQY-KATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQ--------S--- 73 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC----CCCSCEEEEECCSSSCCEEEEEECCC------------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCccc-CCccceEEEEEEEEEcCCcEEEEEEEECCCChHhh--------h---
Confidence 34689999999999999999999987643321 1122223333333333 3688999999953321 1
Q ss_pred HHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhc--ccccccEEEEEEccCCC
Q 005287 154 SVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFG--TAIWFNTILVMTHSSST 211 (704)
Q Consensus 154 ~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG--~~~~k~vIVVLTK~D~l 211 (704)
....++ ..+|++++|++++....-......+..+..... .....|+++|+||+|+.
T Consensus 74 ~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 131 (182)
T 1ky3_A 74 LGVAFY--RGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAE 131 (182)
T ss_dssp ---CCS--TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSC
T ss_pred hhHHHh--hcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccc
Confidence 111222 267999999877543211112233444444332 11357999999999985
No 106
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.16 E-value=1.5e-10 Score=108.06 Aligned_cols=120 Identities=13% Similarity=0.006 Sum_probs=67.2
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
.++|+|+|.+|||||||+|+|++........ .+.|.+........++ ..+.++||||...... .+..
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~--- 70 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHE-MENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGG-------WLQD--- 70 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC-------------CEEEEEEEETTEEEEEEEECCCCC---------------C---
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCccccc-CCCcCCeeeEEEEECCeEEEEEEEECCCccccch-------hhhh---
Confidence 3799999999999999999999866444432 2334444444444555 4678999999864311 0111
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 157 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
.+++ .+|++++|.+++....-..-...+..+..... ....|+++|.||+|+..
T Consensus 71 ~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~ 123 (169)
T 3q85_A 71 HCLQ--TGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLAR 123 (169)
T ss_dssp HHHH--HCSEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCGG
T ss_pred hhhc--cCCEEEEEEECCChHHHHHHHHHHHHHHhccc-CCCCCEEEEeeCcchhh
Confidence 1222 46999999887653210112233333333321 12579999999999863
No 107
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.15 E-value=5.8e-11 Score=111.72 Aligned_cols=122 Identities=15% Similarity=0.033 Sum_probs=73.9
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC---eEEEEEECCCCCCcccchhhhhHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG---IKVTFIDTPGFLPSCVRNVKRNRKIML 153 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G---~~v~LIDTPGl~d~~~~~~~~n~~il~ 153 (704)
...++|+|+|.+|||||||+|+|++....... .+..+.+.......+.+ ..+.++||||...... .
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~--------~-- 72 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQY-KQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGK--------M-- 72 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHH-HHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCT--------T--
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCC-CCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccc--------h--
Confidence 34689999999999999999999986543221 11112334444445555 7899999999754321 1
Q ss_pred HHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccccccc-EEEEEEccCCCC
Q 005287 154 SVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFN-TILVMTHSSSTL 212 (704)
Q Consensus 154 ~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~-vIVVLTK~D~l~ 212 (704)
...+++ .+|++++|++++....-..-...+..+..........| +++|.||+|+..
T Consensus 73 -~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~ 129 (178)
T 2hxs_A 73 -LDKYIY--GAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEH 129 (178)
T ss_dssp -HHHHHT--TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGG
T ss_pred -hhHHHh--hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccc
Confidence 112333 67999999887643210111233444444321111244 789999999863
No 108
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.15 E-value=2.5e-11 Score=115.21 Aligned_cols=120 Identities=13% Similarity=0.115 Sum_probs=54.6
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
+..++|+|+|.+|||||||+|+|++..... ...+..+.+.......+++ ..+.|+||||..... ..
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~--- 73 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNS-TFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR--------TI--- 73 (183)
T ss_dssp SEEEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC--------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhh--------hh---
Confidence 346899999999999999999999765321 1111223334444445566 688999999974321 00
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 155 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 155 Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
...++ ..+|++++|++++....-..-...+..+.... ....|+++|+||+|+..
T Consensus 74 ~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~ 127 (183)
T 2fu5_C 74 TTAYY--RGAMGIMLVYDITNEKSFDNIRNWIRNIEEHA--SADVEKMILGNKCDVND 127 (183)
T ss_dssp CCTTT--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CTTCEEEEEEEC--CCS
T ss_pred HHHHH--hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECccCCc
Confidence 11222 26799999988764321001112333333331 12479999999999864
No 109
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.15 E-value=4.4e-11 Score=136.09 Aligned_cols=128 Identities=16% Similarity=0.179 Sum_probs=75.8
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCc--cccCCCCccceEEEEEee-------------------------------
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKT--ETDAFQPATDCIREVKGS------------------------------- 123 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a--~vs~~~~tT~~~~~~~~~------------------------------- 123 (704)
...++|+|+|.+|||||||+|+|+|.... .++..+.+|+ ...+...
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~-~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDC-FVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCS-EEEEECCSSSEEECCC------------------CCCT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccce-EEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 45689999999999999999999999875 3444433332 2211110
Q ss_pred ------EcC---eEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhc
Q 005287 124 ------VNG---IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFG 194 (704)
Q Consensus 124 ------~~G---~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG 194 (704)
+.+ ..++||||||+.+...........+......++. .+|+|++|+++........+..+++.+..
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~--~aD~il~VvDa~~~~~~~~~~~~l~~l~~--- 216 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAE--RVDLIILLFDAHKLEISDEFSEAIGALRG--- 216 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHH--HCSEEEEEEETTSCCCCHHHHHHHHHTTT---
T ss_pred cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHH--hCCEEEEEEeCCcCCCCHHHHHHHHHHHh---
Confidence 000 3689999999986321100000001222333443 56999999887653222233344444332
Q ss_pred ccccccEEEEEEccCCCC
Q 005287 195 TAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 195 ~~~~k~vIVVLTK~D~l~ 212 (704)
...++++|+||+|+..
T Consensus 217 --~~~pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 217 --HEDKIRVVLNKADMVE 232 (550)
T ss_dssp --CGGGEEEEEECGGGSC
T ss_pred --cCCCEEEEEECCCccC
Confidence 2478999999999874
No 110
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.14 E-value=1.7e-10 Score=112.60 Aligned_cols=121 Identities=16% Similarity=0.156 Sum_probs=73.4
Q ss_pred CCCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHH
Q 005287 76 LDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIML 153 (704)
Q Consensus 76 ~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~ 153 (704)
....++|+|+|.+|||||||+|+|++....... .+..+.+.......+++ ..+.|+||||.... ...
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~-- 94 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQ-GSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERF--------RTI-- 94 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC-----------CEEEEEEEETTEEEEEEEECCTTCGGG--------HHH--
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCCCCCC-CCCcceEEEEEEEEECCEEEEEEEEECCCcHhH--------HHH--
Confidence 345689999999999999999999976633211 11112233334445555 58899999997432 111
Q ss_pred HHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 154 SVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 154 ~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
...+++ .+|++++|++++....-..-...+..+.... ....|+++|.||+|+..
T Consensus 95 -~~~~~~--~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~NK~Dl~~ 148 (201)
T 2hup_A 95 -TQSYYR--SANGAILAYDITKRSSFLSVPHWIEDVRKYA--GSNIVQLLIGNKSDLSE 148 (201)
T ss_dssp -HHHHHT--TCSEEEEEEETTBHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGG
T ss_pred -HHHHHh--hCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECCcccc
Confidence 223443 6799999988754321011223444444432 23479999999999863
No 111
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.14 E-value=2.3e-10 Score=108.03 Aligned_cols=113 Identities=19% Similarity=0.136 Sum_probs=71.3
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 155 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~I 155 (704)
..++|+|+|.+|||||||+|.+++..... ..+++.........+++ ..+.++||||....
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------------- 67 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV---LEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA--------------- 67 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC---CSSCSSSEEEEEEEETTEEEEEEEEECSSSCCH---------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC---cCCCcceeEEEEEEECCEEEEEEEEECCCCchh---------------
Confidence 46899999999999999999999876443 22333333333344455 46788999997431
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc-cccccEEEEEEccCCC
Q 005287 156 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT-AIWFNTILVMTHSSST 211 (704)
Q Consensus 156 k~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~-~~~k~vIVVLTK~D~l 211 (704)
.+++ .+|++++|.+++....-..-...+..+...... ....|+++|.||+|+.
T Consensus 68 -~~~~--~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 68 -KFSG--WADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp -HHHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred -HHHH--hCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 1232 469999998776432100111222234443321 1357999999999985
No 112
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.14 E-value=1.2e-10 Score=114.10 Aligned_cols=120 Identities=19% Similarity=0.183 Sum_probs=71.4
Q ss_pred CCCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEc------------CeEEEEEECCCCCCcccc
Q 005287 76 LDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVN------------GIKVTFIDTPGFLPSCVR 143 (704)
Q Consensus 76 ~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~------------G~~v~LIDTPGl~d~~~~ 143 (704)
.+..++|+|+|.+|||||||+|+|++....... .+..+.+.......+. ...+.|+||||...
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~---- 96 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKF-ITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQER---- 96 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEE-EEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHH----
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCC-CCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHh----
Confidence 345699999999999999999999987642111 0011112222222222 46799999999521
Q ss_pred hhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccc--ccccEEEEEEccCCCC
Q 005287 144 NVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA--IWFNTILVMTHSSSTL 212 (704)
Q Consensus 144 ~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~--~~k~vIVVLTK~D~l~ 212 (704)
.......+++ .+|++++|++++.... ...+..++....... ...|+++|+||+|+..
T Consensus 97 -------~~~~~~~~~~--~~d~iilV~D~~~~~s---~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~ 155 (217)
T 2f7s_A 97 -------FRSLTTAFFR--DAMGFLLMFDLTSQQS---FLNVRNWMSQLQANAYCENPDIVLIGNKADLPD 155 (217)
T ss_dssp -------HHHHHHHHHT--TCCEEEEEEETTCHHH---HHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGG
T ss_pred -------HHhHHHHHhc--CCCEEEEEEECcCHHH---HHHHHHHHHHHHHhcCcCCCCEEEEEECCcccc
Confidence 1122233443 6799999987654321 112223333332211 3579999999999863
No 113
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.14 E-value=8.3e-11 Score=115.98 Aligned_cols=122 Identities=10% Similarity=-0.014 Sum_probs=78.0
Q ss_pred CCCCCeEEEEEeCCCCcHHHHHHHH-hCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHH
Q 005287 75 DLDFSIRILVLGKTGVGKSATINSI-FDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIML 153 (704)
Q Consensus 75 ~~~~~lrIlVVGkTGvGKSTLINsL-lG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~ 153 (704)
.....++|+|+|.+|||||||+|++ .+..........++|.....+.....+..+.|+||||.......
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~---------- 80 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGL---------- 80 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCC----------
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHH----------
Confidence 3446799999999999999999994 44433444444455655555554445678999999996433110
Q ss_pred HHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 154 SVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 154 ~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
...+++ .+|++++|++++....-..-...+..+.+.. ...|+++|+||+|+..
T Consensus 81 -~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~ 133 (221)
T 3gj0_A 81 -RDGYYI--QAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC---ENIPIVLCGNKVDIKD 133 (221)
T ss_dssp -CHHHHT--TCCEEEEEEETTCHHHHHTHHHHHHHHHHHS---TTCCEEEEEECTTSSS
T ss_pred -HHHHHh--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECCcccc
Confidence 112332 6799999988765321111123444444432 2479999999999863
No 114
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.13 E-value=2.3e-10 Score=110.57 Aligned_cols=118 Identities=19% Similarity=0.091 Sum_probs=72.7
Q ss_pred CCCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCe--EEEEEECCCCCCcccchhhhhHHHHH
Q 005287 76 LDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIML 153 (704)
Q Consensus 76 ~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~--~v~LIDTPGl~d~~~~~~~~n~~il~ 153 (704)
....++|+|+|.+|||||||+|++++... .....++|..........++. .+.|+||||.......
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~---------- 84 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGY--PTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKL---------- 84 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSS----------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHH----------
Confidence 34579999999999999999999998762 233445665555455566665 5669999998654211
Q ss_pred HHHHHHhcCCCCEEEEEEeccCccCCCCcH--HHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 154 SVKKFIRRSPPDIVLYFERLDLISMGFSDF--PLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 154 ~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~--~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
...++ ..+|++++|++++.... ..+. .++..+.... ...|+++|+||+|+..
T Consensus 85 -~~~~~--~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~ 138 (201)
T 2q3h_A 85 -RPLCY--TNTDIFLLCFSVVSPSS-FQNVSEKWVPEIRCHC---PKAPIILVGTQSDLRE 138 (201)
T ss_dssp -GGGGG--TTCSEEEEEEETTCHHH-HHHHHHTHHHHHHHHC---SSSCEEEEEECGGGGG
T ss_pred -hHhhc--CCCcEEEEEEECCCHHH-HHHHHHHHHHHHHHhC---CCCCEEEEEECHhhhh
Confidence 01123 36799999988764321 1111 2333444432 2579999999999873
No 115
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.13 E-value=5e-10 Score=123.90 Aligned_cols=118 Identities=13% Similarity=0.072 Sum_probs=78.3
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccC------------------------------CCCccceEEEEEeeEcC
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDA------------------------------FQPATDCIREVKGSVNG 126 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~------------------------------~~~tT~~~~~~~~~~~G 126 (704)
...++|+++|.+|+|||||+|.|++........ ..+.|.+.....+...+
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 456899999999999999999997654322211 13567777777777889
Q ss_pred eEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccC------CCCcHHHHHHHHHHhccccccc
Q 005287 127 IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISM------GFSDFPLLKLMTEVFGTAIWFN 200 (704)
Q Consensus 127 ~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~------~~~D~~lLk~L~~~fG~~~~k~ 200 (704)
..+.||||||..+. ...+...+. .+|++++|++++.... ..+....+..+... ..+
T Consensus 95 ~~~~iiDTPGh~~f-----------~~~~~~~~~--~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~-----~v~ 156 (439)
T 3j2k_7 95 KHFTILDAPGHKSF-----------VPNMIGGAS--QADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA-----GVK 156 (439)
T ss_pred eEEEEEECCChHHH-----------HHHHHhhHh--hCCEEEEEEECCCCccccccCCCchHHHHHHHHHHc-----CCC
Confidence 99999999997432 222223332 6799999987754211 01233333333322 244
Q ss_pred -EEEEEEccCCCC
Q 005287 201 -TILVMTHSSSTL 212 (704)
Q Consensus 201 -vIVVLTK~D~l~ 212 (704)
+|+|+||+|+..
T Consensus 157 ~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 157 HLIVLINKMDDPT 169 (439)
T ss_pred eEEEEeecCCCcc
Confidence 899999999863
No 116
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.13 E-value=1.1e-10 Score=121.43 Aligned_cols=129 Identities=25% Similarity=0.361 Sum_probs=72.9
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCcccc-------CCCCccc-eEEEEEeeEcC--eEEEEEECCCCCCcccchhhh
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETD-------AFQPATD-CIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKR 147 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs-------~~~~tT~-~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~ 147 (704)
+.++|+|+|++|+|||||+|+|+|......+ ..+.++. ....+.....+ ..++++||||++...... ..
T Consensus 1 f~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~-~~ 79 (270)
T 3sop_A 1 FDFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNE-NC 79 (270)
T ss_dssp CEEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCT-TC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccH-HH
Confidence 4689999999999999999999986543322 1111111 11111112122 368999999998653221 11
Q ss_pred hHH----HHHHHHHHH------------hcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 148 NRK----IMLSVKKFI------------RRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 148 n~~----il~~Ik~~i------------k~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
... +.......+ ...++++++|+++......+..|..+++.+.+. .++|+|+||+|.+
T Consensus 80 ~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~------~~vI~Vi~K~D~l 153 (270)
T 3sop_A 80 WEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV------VNIIPVIAKADTM 153 (270)
T ss_dssp SHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT------SEEEEEETTGGGS
T ss_pred HHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc------CcEEEEEeccccC
Confidence 111 111121211 112578999887654333344566677766553 7999999999988
Q ss_pred CC
Q 005287 212 LP 213 (704)
Q Consensus 212 ~p 213 (704)
.+
T Consensus 154 t~ 155 (270)
T 3sop_A 154 TL 155 (270)
T ss_dssp CH
T ss_pred CH
Confidence 54
No 117
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.13 E-value=2.2e-10 Score=124.08 Aligned_cols=126 Identities=15% Similarity=0.152 Sum_probs=73.7
Q ss_pred CeE-EEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 79 SIR-ILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 79 ~lr-IlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
.++ |+|+|.||||||||+|.|+|... .+.....+|.+.......++|.++.++||||+...... ...+.+ .....
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~-~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~--~lve~f-~~tl~ 253 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQ-KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPP--QIVDAF-FVTLS 253 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEEETTEEEEEEECCCBCSSCCG--GGHHHH-HHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCc-cccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCH--HHHHHH-HHHHH
Confidence 444 99999999999999999999874 55556678887777777788999999999998543111 111222 12222
Q ss_pred HHhcCCCCEEEEEEeccCccC-CCCcHH-HHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISM-GFSDFP-LLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~-~~~D~~-lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
.+ ..+|++++|++++.... ...... +.+.+. .++. ...|+|+|+||+|+..
T Consensus 254 ~~--~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~-~l~~-~~~p~ilV~NK~Dl~~ 306 (364)
T 2qtf_A 254 EA--KYSDALILVIDSTFSENLLIETLQSSFEILR-EIGV-SGKPILVTLNKIDKIN 306 (364)
T ss_dssp GG--GGSSEEEEEEETTSCHHHHHHHHHHHHHHHH-HHTC-CSCCEEEEEECGGGCC
T ss_pred HH--HhCCEEEEEEECCCCcchHHHHHHHHHHHHH-HhCc-CCCCEEEEEECCCCCC
Confidence 23 26799999977643220 001111 122233 2332 2478999999999873
No 118
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.13 E-value=1.5e-10 Score=112.17 Aligned_cols=128 Identities=16% Similarity=0.099 Sum_probs=74.5
Q ss_pred CCCCCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEee-EcCeEEEEEECCCCCCcccchhhhhHHHH
Q 005287 74 PDLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGS-VNGIKVTFIDTPGFLPSCVRNVKRNRKIM 152 (704)
Q Consensus 74 ~~~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~-~~G~~v~LIDTPGl~d~~~~~~~~n~~il 152 (704)
.+....++|+|+|.+|||||||+|.+++............|......... .....+.|+||||....... ...
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~---- 88 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDP--TFD---- 88 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCT--TCC----
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhh--hhh----
Confidence 34456799999999999999999999986543322111222222222211 24478999999997553110 000
Q ss_pred HHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 153 LSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 153 ~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
...+++ .+|++++|++++.... .....+..++.+........|+++|.||+|+..
T Consensus 89 --~~~~~~--~~~~~i~v~d~~~~~~-~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~ 143 (196)
T 3llu_A 89 --YEMIFR--GTGALIYVIDAQDDYM-EALTRLHITVSKAYKVNPDMNFEVFIHKVDGLS 143 (196)
T ss_dssp --HHHHHH--TCSEEEEEEETTSCCH-HHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred --cccccc--cCCEEEEEEECCCchH-HHHHHHHHHHHHHHhcCCCCcEEEEEeccccCc
Confidence 012333 5799999988765311 122334444544322223579999999999874
No 119
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.12 E-value=2e-11 Score=131.21 Aligned_cols=124 Identities=12% Similarity=0.153 Sum_probs=78.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC-eEEEEEECCCCCCcccchhhhhHHHHHHHHHHH
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG-IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 159 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G-~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~i 159 (704)
+|+|+|.+|||||||+|+|++... .++..+.+|..+......+.+ ..+.|+||||+.+...........++ +.+
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl----~~i 234 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKP-KIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFL----RHI 234 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECC-EESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHH----HHH
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCC-ccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHH----HHH
Confidence 588999999999999999998764 334556677666655555554 89999999998653221111222232 333
Q ss_pred hcCCCCEEEEEEeccCcc--CCCCc-HHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 160 RRSPPDIVLYFERLDLIS--MGFSD-FPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 160 k~~~~dvVL~Vi~ld~~t--~~~~D-~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
. +++++|+|++++... ....+ ..++..|.........+|+++|+||+|+.
T Consensus 235 ~--~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~ 287 (342)
T 1lnz_A 235 E--RTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMP 287 (342)
T ss_dssp H--HCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTST
T ss_pred H--hccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCC
Confidence 2 469999998876421 10111 12334444321112468999999999976
No 120
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.12 E-value=1.6e-10 Score=111.78 Aligned_cols=121 Identities=12% Similarity=0.053 Sum_probs=74.2
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
...++|+|+|.+|||||||+|+|++....... .+..+.+.........+ ..+.|+||||.......
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------- 73 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQY-KATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSL----------- 73 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSC-CCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCS-----------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCC-CCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHh-----------
Confidence 34689999999999999999999987644321 12223344444444444 57899999996433110
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc--cccccEEEEEEccCCC
Q 005287 155 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSST 211 (704)
Q Consensus 155 Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~--~~~k~vIVVLTK~D~l 211 (704)
...++ ..+|++++|++++....-..-...+..+...... ....|+++|+||+|+.
T Consensus 74 ~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (207)
T 1vg8_A 74 GVAFY--RGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE 130 (207)
T ss_dssp CCGGG--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred HHHHH--hCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence 01223 2679999998775432100112334444443321 1247999999999986
No 121
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.12 E-value=2e-10 Score=112.93 Aligned_cols=120 Identities=17% Similarity=0.141 Sum_probs=74.3
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
...++|+|+|.+|||||||+|+|++...... ..+..+.+.......+++ ..+.|+||||.... ...
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~--------~~~--- 91 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPG-QGATIGVDFMIKTVEINGEKVKLQIWDTAGQERF--------RSI--- 91 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTT-CCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG--------HHH---
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCC-CCCccceeEEEEEEEECCEEEEEEEEECCCcHHH--------HHH---
Confidence 3468999999999999999999998653322 112223344444445566 47899999996321 111
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 155 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 155 Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
...++ ..+|++++|.+++....-..-...+..+.... ....|+++|.||+|+..
T Consensus 92 ~~~~~--~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~NK~Dl~~ 145 (201)
T 2ew1_A 92 TQSYY--RSANALILTYDITCEESFRCLPEWLREIEQYA--SNKVITVLVGNKIDLAE 145 (201)
T ss_dssp HGGGS--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECGGGGG
T ss_pred HHHHH--hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECCCCcc
Confidence 12233 36799999987754321001123444444432 22478999999999863
No 122
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.10 E-value=2.4e-10 Score=111.50 Aligned_cols=114 Identities=10% Similarity=0.121 Sum_probs=69.8
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
..++|+++|.+|||||||+|++.+.......+..+.+ .....+++.++.++||||...... + ...
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~----~~~~~~~~~~l~i~Dt~G~~~~~~--------~---~~~ 88 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT----SEELTIAGMTFTTFDLGGHIQARR--------V---WKN 88 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC------CCCCCS----CEEEEETTEEEEEEEECC----CC--------G---GGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCce----eEEEEECCEEEEEEECCCcHhhHH--------H---HHH
Confidence 4689999999999999999999987654332211222 234456789999999999754321 0 112
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc--cccccEEEEEEccCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSST 211 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~--~~~k~vIVVLTK~D~l 211 (704)
+++ .+|++++|.++..... -..+..++.+.... ....|+++|.||+|+.
T Consensus 89 ~~~--~~d~~i~v~D~~~~~s---~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 139 (198)
T 1f6b_A 89 YLP--AINGIVFLVDCADHER---LLESKEELDSLMTDETIANVPILILGNKIDRP 139 (198)
T ss_dssp GGG--GCSEEEEEEETTCGGG---HHHHHHHHHHHHTCGGGTTSCEEEEEECTTST
T ss_pred HHh--cCCEEEEEEECCCHHH---HHHHHHHHHHHHhCcccCCCcEEEEEECCCcc
Confidence 333 5799999987754321 12233444444322 2357999999999986
No 123
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.10 E-value=1.3e-10 Score=111.82 Aligned_cols=119 Identities=15% Similarity=0.068 Sum_probs=74.0
Q ss_pred CCCCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCe--EEEEEECCCCCCcccchhhhhHHHH
Q 005287 75 DLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIM 152 (704)
Q Consensus 75 ~~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~--~v~LIDTPGl~d~~~~~~~~n~~il 152 (704)
.....++|+|+|.+|||||||+|+|++.... ....+++...........+. .+.|+||||...... .
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~- 87 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIP--TAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDR--------L- 87 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTT--------T-
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCC--CccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHH--------H-
Confidence 3445799999999999999999999987632 22334444433334445554 569999999643211 0
Q ss_pred HHHHHHHhcCCCCEEEEEEeccCccCCCCc--HHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 153 LSVKKFIRRSPPDIVLYFERLDLISMGFSD--FPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 153 ~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D--~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
...++ ..+|++++|.+++.... ..+ ..++..+.... ...|+++|.||+|+..
T Consensus 88 --~~~~~--~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~ 141 (194)
T 3reg_A 88 --RPLSY--ADSDVVLLCFAVNNRTS-FDNISTKWEPEIKHYI---DTAKTVLVGLKVDLRK 141 (194)
T ss_dssp --GGGGC--TTCSEEEEEEETTCHHH-HHHHHHTHHHHHHHHC---TTSEEEEEEECGGGCC
T ss_pred --hHhhc--cCCcEEEEEEECCCHHH-HHHHHHHHHHHHHHhC---CCCCEEEEEEChhhcc
Confidence 11122 26799999988764321 111 12333343331 2479999999999874
No 124
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.10 E-value=2.7e-10 Score=110.28 Aligned_cols=115 Identities=11% Similarity=0.074 Sum_probs=75.0
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
..++|+++|.+|||||||+|++++....... .|.........+++.++.++||||...... . ...
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~---~~~ 86 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATLQ----PTWHPTSEELAIGNIKFTTFDLGGHIQARR--------L---WKD 86 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCCCC----CCCSCEEEEEEETTEEEEEEECCCSGGGTT--------S---GGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCccc----cCCCCCeEEEEECCEEEEEEECCCCHHHHH--------H---HHH
Confidence 4579999999999999999999987654322 233333445567889999999999854321 0 112
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc--cccccEEEEEEccCCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSSTL 212 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~--~~~k~vIVVLTK~D~l~ 212 (704)
++ ..+|++++|.+++.... -..+...+...... ....|+++|.||+|+..
T Consensus 87 ~~--~~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 87 YF--PEVNGIVFLVDAADPER---FDEARVELDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp GC--TTCCEEEEEEETTCGGG---HHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred HH--hcCCEEEEEEECCChHH---HHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence 23 26799999987764321 11233344444322 23579999999999863
No 125
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.10 E-value=4.3e-10 Score=131.99 Aligned_cols=128 Identities=18% Similarity=0.106 Sum_probs=80.9
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEE-------------------------------------
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVK------------------------------------- 121 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~------------------------------------- 121 (704)
-.+|+|+|.+|+|||||+|+|+|.....++.. .+|+.+..+.
T Consensus 51 lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g-~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 51 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG-IVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CSEEEEEECTTTCHHHHHHHHHSSCCSCCSSS-CSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccCcCCc-cccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 46999999999999999999999876544322 3443221111
Q ss_pred --------------e-eEcCeEEEEEECCCCCCcccchh--hhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcH-
Q 005287 122 --------------G-SVNGIKVTFIDTPGFLPSCVRNV--KRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDF- 183 (704)
Q Consensus 122 --------------~-~~~G~~v~LIDTPGl~d~~~~~~--~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~- 183 (704)
. .....+++||||||+......+. .....+...+..++. ..+|++|+|++....- ...+.
T Consensus 130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~-~~aDlIL~VVDAs~~~-~~~d~l 207 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT-KENCLILAVSPANSDL-ANSDAL 207 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT-STTEEEEEEEETTSCS-SSCHHH
T ss_pred CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh-cCCcEEEEEEcCCCCc-chhHHH
Confidence 1 11234689999999987432110 111233444556665 5779999997765421 12343
Q ss_pred HHHHHHHHHhcccccccEEEEEEccCCCCCC
Q 005287 184 PLLKLMTEVFGTAIWFNTILVMTHSSSTLPE 214 (704)
Q Consensus 184 ~lLk~L~~~fG~~~~k~vIVVLTK~D~l~pd 214 (704)
.+++.+.. ...|+|+|+||+|++.+.
T Consensus 208 ~ll~~L~~-----~g~pvIlVlNKiDlv~~~ 233 (772)
T 3zvr_A 208 KIAKEVDP-----QGQRTIGVITKLDLMDEG 233 (772)
T ss_dssp HHHHHHCT-----TCSSEEEEEECTTSSCTT
T ss_pred HHHHHHHh-----cCCCEEEEEeCcccCCcc
Confidence 44544433 258999999999998654
No 126
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.09 E-value=1.8e-10 Score=127.11 Aligned_cols=129 Identities=19% Similarity=0.269 Sum_probs=70.1
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccc--cC-CCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHH--
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTET--DA-FQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRK-- 150 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~v--s~-~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~-- 150 (704)
..++|+|+|++|+|||||+|.|+|...... .. .+..+.....+.....+ ..++++||||++...... .....
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~-~~~~~i~ 119 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKE-DSYKPIV 119 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHH-HHSHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccc-hhhhHHH
Confidence 346799999999999999999999854322 11 12223332222222223 268999999998642111 00111
Q ss_pred --HHHHHHHHHh-------------cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCCC
Q 005287 151 --IMLSVKKFIR-------------RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 213 (704)
Q Consensus 151 --il~~Ik~~ik-------------~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~p 213 (704)
+...+..++. ..++|+++|++..........|..+++.|. ...|+|+|+||+|.+.+
T Consensus 120 ~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~------~~~~vI~Vi~KtD~Lt~ 191 (427)
T 2qag_B 120 EFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD------SKVNIIPIIAKADAISK 191 (427)
T ss_dssp HHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC------SCSEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh------hCCCEEEEEcchhccch
Confidence 1112222221 123567776653332333335666666664 24799999999998854
No 127
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.09 E-value=2.6e-10 Score=125.66 Aligned_cols=130 Identities=22% Similarity=0.319 Sum_probs=67.5
Q ss_pred CCCCeEEEEEeCCCCcHHHHHHHHhCCCCccccC--C---CCccceEEEEEe--eEcC--eEEEEEECCCCCCcccchhh
Q 005287 76 LDFSIRILVLGKTGVGKSATINSIFDQTKTETDA--F---QPATDCIREVKG--SVNG--IKVTFIDTPGFLPSCVRNVK 146 (704)
Q Consensus 76 ~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~--~---~~tT~~~~~~~~--~~~G--~~v~LIDTPGl~d~~~~~~~ 146 (704)
.+..++|+|+|++|||||||+|.|+|......+. . ...|.....+.. ...+ ..++++||||++...... .
T Consensus 28 ~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~-~ 106 (418)
T 2qag_C 28 RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNS-N 106 (418)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------
T ss_pred cCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccch-h
Confidence 3567899999999999999999999986532221 0 012222222222 2223 368999999997642110 0
Q ss_pred hhHHHH----HHHHHHH-----------hcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 147 RNRKIM----LSVKKFI-----------RRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 147 ~n~~il----~~Ik~~i-----------k~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
....+. ..+..++ ...++|+|||++.......+..+..+++.+.. ..++|+|+||+|++
T Consensus 107 ~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~------~v~iIlVinK~Dll 180 (418)
T 2qag_C 107 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTL 180 (418)
T ss_dssp -CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT------TSEEEEEEESTTSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc------cCcEEEEEEcccCc
Confidence 001111 1222222 22356788888765432322334445555432 47999999999987
Q ss_pred C
Q 005287 212 L 212 (704)
Q Consensus 212 ~ 212 (704)
.
T Consensus 181 ~ 181 (418)
T 2qag_C 181 T 181 (418)
T ss_dssp C
T ss_pred c
Confidence 4
No 128
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.09 E-value=2.1e-10 Score=113.06 Aligned_cols=117 Identities=16% Similarity=0.173 Sum_probs=65.2
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCe--EEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~--~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
...++|+|+|.+|||||||+|+|++..... ...+++..........++. .+.|+||||..... ..
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~--------~~--- 98 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPE--SYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYD--------RL--- 98 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC--------------------
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCC--CCCCccceeEEEEEEECCEEEEEEEEECCCchhhh--------HH---
Confidence 457999999999999999999999876432 2234444333334445554 78999999974321 11
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcH--HHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 155 VKKFIRRSPPDIVLYFERLDLISMGFSDF--PLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 155 Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~--~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
...+++ .+|++++|++++.... .... .++..+.... ...|+++|.||+|+..
T Consensus 99 ~~~~~~--~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~ 152 (214)
T 2j1l_A 99 RPLFYP--DASVLLLCFDVTSPNS-FDNIFNRWYPEVNHFC---KKVPIIVVGCKTDLRK 152 (214)
T ss_dssp --------CEEEEEEEEETTCHHH-HHHHHHTHHHHHHHHC---SSCCEEEEEECGGGGS
T ss_pred HHHHhc--cCCEEEEEEECcCHHH-HHHHHHHHHHHHHHhC---CCCCEEEEEEChhhhc
Confidence 112232 6799999987754321 0111 2333333322 2479999999999874
No 129
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.09 E-value=1.1e-10 Score=127.78 Aligned_cols=89 Identities=19% Similarity=0.138 Sum_probs=44.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEee---------------------Ec---CeEEEEEECC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGS---------------------VN---GIKVTFIDTP 135 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~---------------------~~---G~~v~LIDTP 135 (704)
++|+|+|.||||||||+|+|++.. +.++..+.+|.+....... +. +.++.|+|||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp 79 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA 79 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence 589999999999999999999988 6677777788765443211 12 3579999999
Q ss_pred CCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccC
Q 005287 136 GFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDL 175 (704)
Q Consensus 136 Gl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~ 175 (704)
|+....... ..+...+..++ ..+|++++|+++..
T Consensus 80 G~~~~a~~~----~~l~~~~l~~i--~~aD~il~VvD~~~ 113 (397)
T 1wxq_A 80 GLVPGAHEG----RGLGNKFLDDL--RMASALIHVVDATG 113 (397)
T ss_dssp -------------------CCCSS--TTCSEEEEEEETTC
T ss_pred Ccccchhhh----hhHHHHHHHHH--hcCCEEEEEEeccc
Confidence 997542111 11222111122 36899999988754
No 130
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.08 E-value=3.5e-10 Score=106.91 Aligned_cols=116 Identities=18% Similarity=0.092 Sum_probs=73.3
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCe--EEEEEECCCCCCcccchhhhhHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIMLSV 155 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~--~v~LIDTPGl~d~~~~~~~~n~~il~~I 155 (704)
..++|+|+|.+|||||||+|++++.... ....+++...........+. .+.++||||...... . .
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~---~ 70 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDR--------L---R 70 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCC--SSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTT--------T---G
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCC--CCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHH--------H---H
Confidence 4689999999999999999999975532 22234444433444455554 566999999854311 0 0
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcH--HHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 156 KKFIRRSPPDIVLYFERLDLISMGFSDF--PLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 156 k~~ik~~~~dvVL~Vi~ld~~t~~~~D~--~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
..++ ..+|++++|++++.... ..+. .++..+..... ..|+++|+||+|+..
T Consensus 71 ~~~~--~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 123 (186)
T 1mh1_A 71 PLSY--PQTDVSLICFSLVSPAS-FENVRAKWYPEVRHHCP---NTPIILVGTKLDLRD 123 (186)
T ss_dssp GGGC--TTCSEEEEEEETTCHHH-HHHHHHTHHHHHHHHST---TSCEEEEEECHHHHT
T ss_pred HHhc--cCCcEEEEEEECCChhh-HHHHHHHHHHHHHHhCC---CCCEEEEeEcccccc
Confidence 1122 36799999988764321 0111 23444444322 579999999999873
No 131
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.08 E-value=6.6e-10 Score=107.04 Aligned_cols=119 Identities=14% Similarity=0.187 Sum_probs=71.7
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
...++|+|+|.+|||||||+|++++.... ....+++..........++ ..+.|+||||......
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~------------ 84 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFI--SEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRN------------ 84 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCC------------
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCC--cccCCCccceeeEEEEECCEEEEEEEEECCCCCcchh------------
Confidence 45689999999999999999999987632 2334444443333334444 5678999999754311
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc-cccccEEEEEEccCCC
Q 005287 155 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT-AIWFNTILVMTHSSST 211 (704)
Q Consensus 155 Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~-~~~k~vIVVLTK~D~l 211 (704)
+..+++ .+|++++|.+++....-..-...+..+...... ....|+++|.||+|+.
T Consensus 85 ~~~~~~--~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 140 (187)
T 3c5c_A 85 CERYLN--WAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMA 140 (187)
T ss_dssp THHHHT--TCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGG
T ss_pred HHHHHh--hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchh
Confidence 112443 579999998876432100111233333332110 1257999999999985
No 132
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.07 E-value=5.3e-10 Score=109.59 Aligned_cols=119 Identities=13% Similarity=0.172 Sum_probs=72.2
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccc-cCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTET-DAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSV 155 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~v-s~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~I 155 (704)
...++|+|+|.+|||||||+|+|++...... ....+++. ....+..+.++||||..... ......+
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~ 76 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA------ADYDGSGVTLVDFPGHVKLR-------YKLSDYL 76 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEE------TTGGGSSCEEEECCCCGGGT-------HHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEE------EEeeCceEEEEECCCcHHHH-------HHHHHHH
Confidence 3568999999999999999999998764322 11222211 11256789999999995431 1111112
Q ss_pred HHHHhcCCCCEEEEEEecc-CccCCCCcHHHHHHHHHHhc-----ccccccEEEEEEccCCCCC
Q 005287 156 KKFIRRSPPDIVLYFERLD-LISMGFSDFPLLKLMTEVFG-----TAIWFNTILVMTHSSSTLP 213 (704)
Q Consensus 156 k~~ik~~~~dvVL~Vi~ld-~~t~~~~D~~lLk~L~~~fG-----~~~~k~vIVVLTK~D~l~p 213 (704)
...+ ..+|+++||++.. ... .-......+.+.+. .....|+++|+||+|+...
T Consensus 77 ~~~~--~~~~~~i~v~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 135 (218)
T 1nrj_B 77 KTRA--KFVKGLIFMVDSTVDPK---KLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 135 (218)
T ss_dssp HHHG--GGEEEEEEEEETTSCTT---CCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred Hhcc--ccCCEEEEEEECCCChH---HHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhccc
Confidence 2211 1368999998776 221 11223333433332 1235789999999998743
No 133
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.07 E-value=8e-11 Score=137.38 Aligned_cols=119 Identities=15% Similarity=0.227 Sum_probs=75.2
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEe------e----------------------EcC---
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKG------S----------------------VNG--- 126 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~------~----------------------~~G--- 126 (704)
..++|+|+|.+|+|||||+|+|+|...+.++.. ++|..+..+.. + +.+
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~-p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVN-PCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCC-TTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCC-CCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 469999999999999999999999988877654 34421111100 0 011
Q ss_pred ---------------------------eEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCC
Q 005287 127 ---------------------------IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMG 179 (704)
Q Consensus 127 ---------------------------~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~ 179 (704)
..++||||||+.+... ....+..+++ .+|+||||++.+... .
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~--------~~~~~~~~i~--~aD~vL~Vvda~~~~-s 215 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA--------RNELSLGYVN--NCHAILFVMRASQPC-T 215 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT--------CHHHHTHHHH--SSSEEEEEEETTSTT-C
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh--------HHHHHHHHHH--hCCEEEEEEeCCCcc-c
Confidence 4689999999975421 1122334454 579999998765432 1
Q ss_pred CCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 180 FSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 180 ~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
..+...+ ..... ....|+++|+||+|+..
T Consensus 216 ~~e~~~l---~~~l~-~~~~~iiiVlNK~Dl~~ 244 (695)
T 2j69_A 216 LGERRYL---ENYIK-GRGLTVFFLVNAWDQVR 244 (695)
T ss_dssp HHHHHHH---HHHTT-TSCCCEEEEEECGGGGG
T ss_pred hhHHHHH---HHHHH-hhCCCEEEEEECccccc
Confidence 1233333 22221 12468999999999874
No 134
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.07 E-value=5e-10 Score=107.61 Aligned_cols=116 Identities=16% Similarity=0.111 Sum_probs=74.3
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 155 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~I 155 (704)
..++|+|+|.+|||||||+|+|++.... ....+++..........++ ..+.|+||||....... .
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------~ 83 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFP--EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRL-----------R 83 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC--CSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTT-----------G
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHH-----------H
Confidence 4589999999999999999999987432 2234444443333444555 57899999998654210 0
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcH--HHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 156 KKFIRRSPPDIVLYFERLDLISMGFSDF--PLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 156 k~~ik~~~~dvVL~Vi~ld~~t~~~~D~--~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
..++ ..+|++++|.+++.... .... .++..+.+.. ...|+++|+||+|+..
T Consensus 84 ~~~~--~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~ 136 (194)
T 2atx_A 84 PLSY--PMTDVFLICFSVVNPAS-FQNVKEEWVPELKEYA---PNVPFLLIGTQIDLRD 136 (194)
T ss_dssp GGGC--TTCSEEEEEEETTCHHH-HHHHHHTHHHHHHHHS---TTCCEEEEEECTTSTT
T ss_pred HHhc--CCCCEEEEEEECCCHHH-HHHHHHHHHHHHHHhC---CCCCEEEEEEChhhcc
Confidence 1122 36799999987754321 0111 2344444432 2579999999999874
No 135
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.07 E-value=4.8e-10 Score=109.07 Aligned_cols=126 Identities=16% Similarity=0.235 Sum_probs=68.7
Q ss_pred CCCCeEEEEEeCCCCcHHHHHHHHhCCC-CccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 76 LDFSIRILVLGKTGVGKSATINSIFDQT-KTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 76 ~~~~lrIlVVGkTGvGKSTLINsLlG~~-~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
.....+|+|+|++|||||||+|.|+|.. ...+.+..++|.....+. +.+ .+.++||||+....... .....+...
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~--~~~-~~~l~Dt~G~~~~~~~~-~~~~~~~~~ 98 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFE--VAD-GKRLVDLPGYGYAEVPE-EMKRKWQRA 98 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEE--EET-TEEEEECCCCC-------CCHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEE--ecC-CEEEEECcCCcccccCH-HHHHHHHHH
Confidence 3456899999999999999999999986 344444455555443332 233 67899999997532211 111122222
Q ss_pred HHHHHhc-CCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 155 VKKFIRR-SPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 155 Ik~~ik~-~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
+..++.. ..++.+++|.++..... ..+..+.+.+.. ...+.++|.||+|.+
T Consensus 99 ~~~~~~~~~~~~~~~~v~d~~~~~~-~~~~~~~~~~~~-----~~~~~~~v~nK~D~~ 150 (210)
T 1pui_A 99 LGEYLEKRQSLQGLVVLMDIRHPLK-DLDQQMIEWAVD-----SNIAVLVLLTKADKL 150 (210)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHHH-----TTCCEEEEEECGGGS
T ss_pred HHHHHHhhhcccEEEEEEECCCCCc-hhHHHHHHHHHH-----cCCCeEEEEecccCC
Confidence 3333322 35678888877654221 123334444432 247889999999976
No 136
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.07 E-value=1e-10 Score=113.88 Aligned_cols=117 Identities=14% Similarity=0.098 Sum_probs=71.9
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 155 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~I 155 (704)
..++|+|+|.+|||||||+|++++...... ..+++..........++ ..+.|+||||...... . .
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~---~ 90 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEV--YVPTVFENYIADIEVDGKQVELALWDTAGQEDYDR--------L---R 90 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSS--CCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTT--------T---G
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCcc--cCCcccceEEEEEEECCEEEEEEEEECCCchhHHH--------H---H
Confidence 468999999999999999999998764332 22332221112234455 4789999999743211 0 0
Q ss_pred HHHHhcCCCCEEEEEEeccCcc-CCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 156 KKFIRRSPPDIVLYFERLDLIS-MGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 156 k~~ik~~~~dvVL~Vi~ld~~t-~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
..++ ..+|++++|++++... .......++..+.... ...|+++|+||+|+..
T Consensus 91 ~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~ 143 (201)
T 2gco_A 91 PLSY--PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRQ 143 (201)
T ss_dssp GGGC--TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS---TTCCEEEEEECGGGTT
T ss_pred HHhc--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEecHHhhc
Confidence 1122 3679999998776432 1001122344444432 2479999999999874
No 137
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.06 E-value=2.9e-10 Score=111.18 Aligned_cols=117 Identities=15% Similarity=0.099 Sum_probs=71.6
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLSV 155 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~I 155 (704)
..++|+|+|.+|||||||+|+|++...... ..+++..........++ ..+.|+||||....... .
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-----------~ 90 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEV--YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRL-----------R 90 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC---------CCEEEEEEEETTEEEEEEEEECTTCTTCTTT-----------G
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCCc--CCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHH-----------H
Confidence 357999999999999999999998764432 22333333323344555 47889999998643210 0
Q ss_pred HHHHhcCCCCEEEEEEeccCcc-CCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 156 KKFIRRSPPDIVLYFERLDLIS-MGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 156 k~~ik~~~~dvVL~Vi~ld~~t-~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
..++ ..+|++++|++++... ....+..++..+.... ...|+++|+||+|+..
T Consensus 91 ~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~ 143 (207)
T 2fv8_A 91 PLSY--PDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC---PNVPIILVANKKDLRS 143 (207)
T ss_dssp GGGC--TTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHS---TTCCEEEEEECGGGGG
T ss_pred Hhhc--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEchhhhc
Confidence 1122 3679999998776432 1001122344444432 2479999999999873
No 138
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.06 E-value=3.2e-10 Score=112.28 Aligned_cols=120 Identities=17% Similarity=0.077 Sum_probs=71.4
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
...++|+|+|.+|||||||+|+|++........ +..+.+.......+++ ..+.|+||||.......
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------- 78 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSK-STIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAI----------- 78 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC-------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCC-----------
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCC-CcccceeEEEEEEECCEEEEEEEEECCCccchhhh-----------
Confidence 346899999999999999999999876543321 2222333333444556 58899999997543210
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 155 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 155 Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
...++ ..+|++++|++++....-......+..+.... ....|+++|+||+|+..
T Consensus 79 ~~~~~--~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~--~~~~piilv~nK~Dl~~ 132 (223)
T 3cpj_B 79 TSAYY--RGAVGALIVYDISKSSSYENCNHWLSELRENA--DDNVAVGLIGNKSDLAH 132 (223)
T ss_dssp CGGGT--TTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHC--C--CEEEEEECCGGGGG
T ss_pred HHHHh--ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEECccccc
Confidence 01222 26799999987654321001112333343332 12478999999999863
No 139
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.04 E-value=2e-09 Score=103.71 Aligned_cols=114 Identities=17% Similarity=0.092 Sum_probs=72.2
Q ss_pred CCCCCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCe--EEEEEECCCCCCcccchhhhhHHH
Q 005287 74 PDLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKI 151 (704)
Q Consensus 74 ~~~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~--~v~LIDTPGl~d~~~~~~~~n~~i 151 (704)
......++|+|+|.+|||||||+|.+++...... ..+ |.........+++. .+.|+||||.... .
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~--~~~-t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~-- 81 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQE--ESP-EGGRFKKEIVVDGQSYLLLIRDEGGPPEL--------Q-- 81 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCC--CCT-TCEEEEEEEEETTEEEEEEEEECSSSCCH--------H--
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCC--cCC-CcceEEEEEEECCEEEEEEEEECCCChhh--------h--
Confidence 3445679999999999999999999998654322 122 33323344556664 5677999998532 1
Q ss_pred HHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc--cccccEEEEEEccCCC
Q 005287 152 MLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSST 211 (704)
Q Consensus 152 l~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~--~~~k~vIVVLTK~D~l 211 (704)
+++ .+|++++|++++.... -..+..++...... ....|+++|.||+|+.
T Consensus 82 ------~~~--~~~~~i~v~d~~~~~s---~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (184)
T 3ihw_A 82 ------FAA--WVDAVVFVFSLEDEIS---FQTVYNYFLRLCSFRNASEVPMVLVGTQDAIS 132 (184)
T ss_dssp ------HHH--HCSEEEEEEETTCHHH---HHHHHHHHHHHHTTSCGGGSCEEEEEECTTCB
T ss_pred ------eec--CCCEEEEEEECcCHHH---HHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 222 4699999987764321 11122233332221 1357999999999985
No 140
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.04 E-value=1.8e-10 Score=112.65 Aligned_cols=117 Identities=18% Similarity=0.087 Sum_probs=73.3
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeE--EEEEECCCCCCcccchhhhhHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIK--VTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~--v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
...++|+|+|.+|||||||+|++++.... ....+++.+........++.. +.|+||||.......
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~----------- 94 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRL----------- 94 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCC--C-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTT-----------
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCC--CCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHH-----------
Confidence 45799999999999999999999975532 223455555554445555554 559999998543110
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcH--HHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 155 VKKFIRRSPPDIVLYFERLDLISMGFSDF--PLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 155 Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~--~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
...++ ..+|++++|++++.... ..+. .++..+.... ...|+++|+||+|+..
T Consensus 95 ~~~~~--~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~ 148 (204)
T 4gzl_A 95 RPLSY--PQTDVFLICFSLVSPAS-FENVRAKWYPEVRHHC---PNTPIILVGTKLDLRD 148 (204)
T ss_dssp GGGGC--TTCSEEEEEEETTCHHH-HHHHHHTHHHHHHHHC---SSCCEEEEEECHHHHT
T ss_pred HHHHh--ccCCEEEEEEECCCHHH-HHHHHHHHHHHHHHhC---CCCCEEEEEechhhcc
Confidence 11122 36799999987764321 1111 2333444332 2479999999999874
No 141
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.03 E-value=8.9e-10 Score=117.20 Aligned_cols=115 Identities=10% Similarity=0.020 Sum_probs=75.3
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
..++|+|+|.+|||||||+|+|++...... . .|...........+..+.|+||||-..... ....
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~--~--pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-----------~~~~ 228 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT--I--PTIGFNVETVEYKNISFTVWDVGGQDKIRP-----------LWRH 228 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE--E--EETTEEEEEEEETTEEEEEEECC-----CC-----------SHHH
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc--c--cccceEEEEEecCcEEEEEEECCCCHhHHH-----------HHHH
Confidence 467999999999999999999998774322 1 255555566677889999999999543211 1123
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccc--ccccEEEEEEccCCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTA--IWFNTILVMTHSSSTL 212 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~--~~k~vIVVLTK~D~l~ 212 (704)
+++ .+|++++|++++.... -..+...+...+... ...|+|+|+||+|+..
T Consensus 229 ~~~--~ad~vilV~D~~~~~s---~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~ 280 (329)
T 3o47_A 229 YFQ--NTQGLIFVVDSNDRER---VNEAREELMRMLAEDELRDAVLLVFANKQDLPN 280 (329)
T ss_dssp HHT--TEEEEEEEEETTCSSS---HHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred Hhc--cCCEEEEEEECCchHH---HHHHHHHHHHHHhhhccCCCeEEEEEECccCCc
Confidence 333 6799999988764321 223334444443322 2578999999999864
No 142
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.02 E-value=1e-09 Score=104.49 Aligned_cols=122 Identities=11% Similarity=0.052 Sum_probs=71.4
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCC-------CCccceEEEEEe---eE--cCeEEEEEECCCCCCcccch
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAF-------QPATDCIREVKG---SV--NGIKVTFIDTPGFLPSCVRN 144 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~-------~~tT~~~~~~~~---~~--~G~~v~LIDTPGl~d~~~~~ 144 (704)
...++|+|+|.+|||||||+|.|.+......... ...|........ .. ....+.|+||||.....
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--- 88 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN--- 88 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS---
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH---
Confidence 3468999999999999999999988654432210 011221111111 11 23578999999975431
Q ss_pred hhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHH----HHHHHHhcccccccEEEEEEccCCCC
Q 005287 145 VKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLL----KLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 145 ~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lL----k~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
.. ...++ ..+|++++|++++.... ..+...+ .++.+........|+++|.||+|+..
T Consensus 89 -----~~---~~~~~--~~~d~~i~v~D~~~~~~-~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~ 149 (198)
T 3t1o_A 89 -----AS---RKLIL--RGVDGIVFVADSAPNRL-RANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPD 149 (198)
T ss_dssp -----HH---HHHHT--TTCCEEEEEEECCGGGH-HHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTT
T ss_pred -----HH---HHHHH--hcCCEEEEEEECCcchh-hHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhccc
Confidence 11 11233 36799999987763210 1122223 33333211223579999999999863
No 143
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.01 E-value=3.1e-11 Score=117.17 Aligned_cols=120 Identities=19% Similarity=0.181 Sum_probs=71.5
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
...++|+|+|.+|||||||+|+|++....... .+..|.+........++ ..+.|+||||.......
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------- 98 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESY-ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI----------- 98 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHH-HHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCC-----------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCc-CCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHH-----------
Confidence 45689999999999999999999987644331 12233344444455566 57899999997543211
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc-cccccEEEEEEccCCCCC
Q 005287 155 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT-AIWFNTILVMTHSSSTLP 213 (704)
Q Consensus 155 Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~-~~~k~vIVVLTK~D~l~p 213 (704)
...++ ..+|++++|++++.... -..+..++...... ....|+++|+||+|+...
T Consensus 99 ~~~~~--~~~d~~i~v~d~~~~~s---~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~ 153 (199)
T 3l0i_B 99 TSSYY--RGAHGIIVVYDVTDQES---FNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 153 (199)
T ss_dssp SCC----CCCSEEEECC-CCCSHH---HHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--
T ss_pred HHHHh--hcCCEEEEEEECCCHHH---HHHHHHHHHHHHHhccCCCCEEEEEECccCCcc
Confidence 01122 26799999976654321 11222233332221 124799999999998743
No 144
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.01 E-value=2.1e-09 Score=104.75 Aligned_cols=123 Identities=14% Similarity=-0.029 Sum_probs=73.8
Q ss_pred CCCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCe--EEEEEECCCCCCcccchhhhhHHHHH
Q 005287 76 LDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIML 153 (704)
Q Consensus 76 ~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~--~v~LIDTPGl~d~~~~~~~~n~~il~ 153 (704)
....++|+|+|.+|||||||+|++++...... ..+.+|.+.......+++. .+.++||||..... ..+..
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~-------~~~~~ 91 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSA-HEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAG-------GWLRD 91 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGG-GTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGG-------HHHHH
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCcc-CCCCcccceEEEEEEECCEEEEEEEEecCCCccch-------hhhHH
Confidence 34568999999999999999999987543222 2233444444444455664 56788999985421 11111
Q ss_pred HHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 154 SVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 154 ~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
.+++ .+|++++|.+++....-..-...+..+..... ....|+|+|.||+|+..
T Consensus 92 ---~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 144 (195)
T 3cbq_A 92 ---HCLQ--TGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLAR 144 (195)
T ss_dssp ---HHHH--HCSEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCTT
T ss_pred ---Hhhc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeechhccc
Confidence 2333 46999999877643210011223333333221 12579999999999864
No 145
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.01 E-value=6.6e-10 Score=106.23 Aligned_cols=116 Identities=16% Similarity=0.116 Sum_probs=70.5
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEc--CeEEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVN--GIKVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~--G~~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
...++|+|+|.+|||||||+|+|++..... ...+++..........+ ...+.++||||...... .
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~--- 71 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPE--NYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDN--------V--- 71 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCS--SCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTT--------T---
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCccceeEEEEEEECCEEEEEEEEECCCChhhhh--------h---
Confidence 356899999999999999999999865432 12233222222223333 35789999999743211 0
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCc--HHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 155 VKKFIRRSPPDIVLYFERLDLISMGFSD--FPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 155 Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D--~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
...++ ..+|++++|++++.... ..+ ..++..+.... ...|+++|.||+|+.
T Consensus 72 ~~~~~--~~~~~~i~v~d~~~~~s-~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~ 124 (184)
T 1m7b_A 72 RPLSY--PDSDAVLICFDISRPET-LDSVLKKWKGEIQEFC---PNTKMLLVGCKSDLR 124 (184)
T ss_dssp GGGGC--TTCSEEEEEEETTCHHH-HHHHHHTHHHHHHHHC---TTCEEEEEEECGGGG
T ss_pred HHhhc--CCCcEEEEEEECCCHHH-HHHHHHHHHHHHHHHC---CCCCEEEEEEcchhh
Confidence 01122 36799999987764321 011 12333343332 247999999999986
No 146
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.00 E-value=3e-11 Score=130.88 Aligned_cols=122 Identities=20% Similarity=0.137 Sum_probs=80.8
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCC-----CCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHH
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQ-----TKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIML 153 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~-----~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~ 153 (704)
..+|+++|.||||||||+|+|++. ....++..+++|++...+.. +..+.++||||+.+.......... +
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~---~~~~~liDtPG~~~~~~~~~~l~~---~ 235 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPL---ESGATLYDTPGIINHHQMAHFVDA---R 235 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEEC---STTCEEEECCSCCCCSSGGGGSCT---T
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEe---CCCeEEEeCCCcCcHHHHHHHHhH---H
Confidence 358999999999999999999997 56677788889988776653 234799999999876421111111 2
Q ss_pred HHHHHHhcCCCCEEEEEEeccCcc-CCCCcHHHHHHHHHHhcccccccEEEEEEccCCCCC
Q 005287 154 SVKKFIRRSPPDIVLYFERLDLIS-MGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTLP 213 (704)
Q Consensus 154 ~Ik~~ik~~~~dvVL~Vi~ld~~t-~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~p 213 (704)
.+..++....++.++|+++....- ..... .+..+. ....++++|+||.|.+..
T Consensus 236 ~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~--~l~~l~-----~~~~~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 236 DLKIITPKREIHPRVYQLNEGQTLFFGGLA--RLDYIK-----GGRRSFVCYMANELTVHR 289 (369)
T ss_dssp THHHHSCSSCCCCEEEEECTTEEEEETTTE--EEEEEE-----SSSEEEEEEECTTSCEEE
T ss_pred HHHHHhcccccCceEEEEcCCceEEECCEE--EEEEcc-----CCCceEEEEecCCccccc
Confidence 334444455789999998763210 00011 111111 124689999999998853
No 147
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.99 E-value=5.9e-11 Score=128.57 Aligned_cols=122 Identities=16% Similarity=0.144 Sum_probs=76.0
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCC------CccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHH
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQT------KTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIM 152 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~------~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il 152 (704)
..+|+++|.||||||||+|+|++.. ...++..+++|+....+... ..+.++||||+.+......... .
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~---~~~~liDtPG~~~~~~~~~~l~---~ 233 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLD---EESSLYDTPGIINHHQMAHYVG---K 233 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESS---SSCEEEECCCBCCTTSGGGGSC---H
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEec---CCeEEEeCCCcCcHHHHHHHhh---H
Confidence 3689999999999999999999863 34467778888887776532 2379999999987642111111 2
Q ss_pred HHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 153 LSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 153 ~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
+.+..++....++.++|+++.+..-. ..+...+..+. ....|+++|+||.|.+.
T Consensus 234 ~~l~~~~~~~~i~~~~~~l~~~~~~~-~g~l~~~d~l~-----~~~~~~~~v~nk~d~~~ 287 (368)
T 3h2y_A 234 QSLKLITPTKEIKPMVFQLNEEQTLF-FSGLARFDYVS-----GGRRAFTCHFSNRLTIH 287 (368)
T ss_dssp HHHHHHSCSSCCCCEEEEECTTEEEE-ETTTEEEEEEE-----SSSEEEEEEECTTSCEE
T ss_pred HHHHHhccccccCceEEEEcCCCEEE-EcceEEEEEec-----CCCceEEEEecCccccc
Confidence 34445555567899999976532110 00100111111 12478999999999884
No 148
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.98 E-value=6.4e-10 Score=106.70 Aligned_cols=117 Identities=16% Similarity=0.167 Sum_probs=62.9
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCcc-ceEEEEEeeE-----cCeEEEEEECCCCCCcccchhhhhHHHH
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPAT-DCIREVKGSV-----NGIKVTFIDTPGFLPSCVRNVKRNRKIM 152 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT-~~~~~~~~~~-----~G~~v~LIDTPGl~d~~~~~~~~n~~il 152 (704)
.++|+|+|.+|||||||+|.|++..........+++ .+........ ....+.++||||..... ...
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------~~~ 73 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFY--------STH 73 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHH--------TTS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHH--------Hhh
Confidence 479999999999999999999986422222222222 2332222222 35688999999973221 111
Q ss_pred HHHHHHHhcCCCCEEEEEEeccCc-cCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 153 LSVKKFIRRSPPDIVLYFERLDLI-SMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 153 ~~Ik~~ik~~~~dvVL~Vi~ld~~-t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
..+++ ..+++++|.+++.. .....-...+..+... ....|+++|.||+|+.
T Consensus 74 ---~~~~~--~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~ 125 (184)
T 2zej_A 74 ---PHFMT--QRALYLAVYDLSKGQAEVDAMKPWLFNIKAR---ASSSPVILVGTHLDVS 125 (184)
T ss_dssp ---HHHHH--HSEEEEEEEEGGGCHHHHHTHHHHHHHHHHH---CTTCEEEEEEECGGGC
T ss_pred ---HHHcc--CCcEEEEEEeCCcchhHHHHHHHHHHHHHhh---CCCCcEEEEEECCCcc
Confidence 12232 35888888777543 1100111223333322 1247899999999975
No 149
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.98 E-value=3.9e-10 Score=106.45 Aligned_cols=117 Identities=16% Similarity=0.080 Sum_probs=64.9
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
...++|+|+|.+|||||||+|++++.... ....+++..........++ ..+.|+||||.......
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------- 72 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRL----------- 72 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC------------CBCCCC-------CEEECCCC-CTTTTT-----------
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhh-----------
Confidence 34689999999999999999999976532 1222333222211222333 45669999997543210
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcH--HHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 155 VKKFIRRSPPDIVLYFERLDLISMGFSDF--PLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 155 Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~--~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
...++ ..+|++++|++++.... .... .++..+.... ...|+++|+||+|+..
T Consensus 73 ~~~~~--~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~ 126 (182)
T 3bwd_D 73 RPLSY--RGADVFILAFSLISKAS-YENVSKKWIPELKHYA---PGVPIVLVGTKLDLRD 126 (182)
T ss_dssp GGGGG--TTCSEEEEEEETTCHHH-HHHHHHTHHHHHHHHC---TTCCEEEEEECHHHHT
T ss_pred HHhhc--cCCCEEEEEEECCCHHH-HHHHHHHHHHHHHHhC---CCCCEEEEEechhhhc
Confidence 11223 26799999987754321 0111 2344444432 1579999999999763
No 150
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.97 E-value=5.6e-10 Score=110.32 Aligned_cols=118 Identities=12% Similarity=0.071 Sum_probs=72.1
Q ss_pred CCCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEc--CeEEEEEECCCCCCcccchhhhhHHHHH
Q 005287 76 LDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVN--GIKVTFIDTPGFLPSCVRNVKRNRKIML 153 (704)
Q Consensus 76 ~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~--G~~v~LIDTPGl~d~~~~~~~~n~~il~ 153 (704)
....++|+|+|.+|||||||+|+|++..... ...+++........... ...+.|+||||...... +
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~-- 91 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPE--TYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDN--------V-- 91 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCS--SCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTT--------T--
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCC--CcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHH--------H--
Confidence 3457999999999999999999999876432 22333333223233333 45789999999743211 0
Q ss_pred HHHHHHhcCCCCEEEEEEeccCccCCCCc--HHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 154 SVKKFIRRSPPDIVLYFERLDLISMGFSD--FPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 154 ~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D--~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
...++ ..+|++++|.+++.... ..+ ..++..+.... ...|+++|.||+|+..
T Consensus 92 -~~~~~--~~~d~~i~v~d~~~~~s-~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~ 145 (214)
T 3q3j_B 92 -RPLCY--SDSDAVLLCFDISRPET-VDSALKKWRTEILDYC---PSTRVLLIGCKTDLRT 145 (214)
T ss_dssp -GGGGC--TTCSEEEEEEETTCTHH-HHHHHTHHHHHHHHHC---TTSEEEEEEECGGGGG
T ss_pred -HHHHc--CCCeEEEEEEECcCHHH-HHHHHHHHHHHHHHhC---CCCCEEEEEEChhhcc
Confidence 11123 26799999988764321 111 13344444432 2479999999999863
No 151
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.97 E-value=1.5e-09 Score=105.95 Aligned_cols=117 Identities=15% Similarity=0.068 Sum_probs=74.1
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
...++|+|+|.+|||||||+|.+++.... ....+++.........+++ ..+.|+||||.......
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------- 73 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRL----------- 73 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCC--ccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHH-----------
Confidence 35689999999999999999999976532 2233444433333334454 58899999998654210
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCc--HHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 155 VKKFIRRSPPDIVLYFERLDLISMGFSD--FPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 155 Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D--~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
...++ ..+|++++|++++.... ... ..++..+.... ...|+++|+||+|+..
T Consensus 74 ~~~~~--~~~d~~ilv~d~~~~~s-~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~ 127 (212)
T 2j0v_A 74 RPLSY--RGADIFVLAFSLISKAS-YENVLKKWMPELRRFA---PNVPIVLVGTKLDLRD 127 (212)
T ss_dssp -CGGG--TTCSEEEEEEETTCHHH-HHHHHHTHHHHHHHHC---TTCCEEEEEECHHHHT
T ss_pred HHhhc--cCCCEEEEEEECCCHHH-HHHHHHHHHHHHHHhC---CCCCEEEEEeCHHhhh
Confidence 01123 36799999987754321 011 12334444332 1579999999999863
No 152
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.97 E-value=1.4e-09 Score=121.50 Aligned_cols=119 Identities=17% Similarity=0.145 Sum_probs=75.7
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCcc------------------------------ccCCCCccceEEEEEeeEcC
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTE------------------------------TDAFQPATDCIREVKGSVNG 126 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~------------------------------vs~~~~tT~~~~~~~~~~~G 126 (704)
...++|+++|.+|+|||||+|+|++..... .....+.|.+.....+...+
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 346999999999999999999997652111 11123567776677777788
Q ss_pred eEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCcc-CC-----CCcHHHHHHHHHHhccccccc
Q 005287 127 IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLIS-MG-----FSDFPLLKLMTEVFGTAIWFN 200 (704)
Q Consensus 127 ~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t-~~-----~~D~~lLk~L~~~fG~~~~k~ 200 (704)
..+.||||||..+. ...+..++. .+|++|+|++++... .. ......+..+. .++ .++
T Consensus 111 ~~~~iiDTPG~~~f-----------~~~~~~~~~--~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~-~~~---~~~ 173 (483)
T 3p26_A 111 ANFTIVDAPGHRDF-----------VPNAIMGIS--QADMAILCVDCSTNAFESGFDLDGQTKEHMLLAS-SLG---IHN 173 (483)
T ss_dssp CEEEEECCCCCGGG-----------HHHHHHHHT--TCSEEEEEEECCC------CCCCHHHHHHHHHHH-HTT---CCC
T ss_pred ceEEEEECCCcHHH-----------HHHHHHhhh--hCCEEEEEEECCCCccccccchhhhHHHHHHHHH-HcC---CCc
Confidence 99999999999542 122233343 689999998776421 00 01122222222 222 257
Q ss_pred EEEEEEccCCCC
Q 005287 201 TILVMTHSSSTL 212 (704)
Q Consensus 201 vIVVLTK~D~l~ 212 (704)
+|+|+||+|+..
T Consensus 174 iIvviNK~Dl~~ 185 (483)
T 3p26_A 174 LIIAMNKMDNVD 185 (483)
T ss_dssp EEEEEECGGGGT
T ss_pred EEEEEECcCccc
Confidence 999999999863
No 153
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.97 E-value=1.2e-09 Score=121.68 Aligned_cols=116 Identities=10% Similarity=0.034 Sum_probs=78.7
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
...++|+|+|.+|||||||+|+|++...... ..|...........+.++.|+||||...... + ..
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~----~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~---~~ 384 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVTT----IPTVGFNVETVTYKNVKFNVWDVGGQDKIRP--------L---WR 384 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCCC----CCCSSEEEEEEESSSCEEEEEEECCCGGGSG--------G---GG
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCCc----CCccceeEEEEEeCCEEEEEEECCCcHHHHH--------H---HH
Confidence 3468999999999999999999998873322 2366666666677889999999999644311 0 11
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc--cccccEEEEEEccCCCC
Q 005287 157 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT--AIWFNTILVMTHSSSTL 212 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~--~~~k~vIVVLTK~D~l~ 212 (704)
.++ ..+|++|+|++++.... -..+...+.+.... ....|+|+|+||+|+..
T Consensus 385 ~~~--~~ad~~i~V~D~~~~~s---~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 437 (497)
T 3lvq_E 385 HYY--TGTQGLIFVVDCADRDR---IDEARQELHRIINDREMRDAIILIFANKQDLPD 437 (497)
T ss_dssp GGG--TTCCEEEEEEETTCGGG---HHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSS
T ss_pred HHh--ccCCEEEEEEECcchhH---HHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCc
Confidence 233 36799999988764321 12233344443322 12579999999999863
No 154
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.96 E-value=4.4e-10 Score=110.68 Aligned_cols=116 Identities=16% Similarity=0.116 Sum_probs=71.0
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEc--CeEEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVN--GIKVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~--G~~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
...++|+|+|.+|||||||+|.|++..... ...+++.........++ ...+.|+||||...... +
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~--- 92 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPE--NYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDN--------V--- 92 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCS--SCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTT--------T---
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCC--CcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhH--------H---
Confidence 456899999999999999999999875432 12233322222223333 35789999999743211 0
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCc--HHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 155 VKKFIRRSPPDIVLYFERLDLISMGFSD--FPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 155 Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D--~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
...++ ..+|++++|++++.... ... ..++..+.... ...|+++|.||+|+.
T Consensus 93 ~~~~~--~~~d~~ilv~D~~~~~s-~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~ 145 (205)
T 1gwn_A 93 RPLSY--PDSDAVLICFDISRPET-LDSVLKKWKGEIQEFC---PNTKMLLVGCKSDLR 145 (205)
T ss_dssp GGGGC--TTCSEEEEEEETTCHHH-HHHHHHTHHHHHHHHC---TTCEEEEEEECGGGG
T ss_pred HHhhc--cCCCEEEEEEECCCHHH-HHHHHHHHHHHHHHHC---CCCCEEEEEechhhc
Confidence 01122 36799999987764321 011 12333444332 247999999999986
No 155
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.96 E-value=2.6e-09 Score=106.72 Aligned_cols=121 Identities=17% Similarity=0.109 Sum_probs=71.6
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCe--EEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~--~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
...++|+|+|.+|||||||+|.+++.....+...++++.+.......++|. .+.++||+|.... ...
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~--------~~~--- 103 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGE--------NEW--- 103 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHH--------HHH---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcch--------hhh---
Confidence 456899999999999999999999865544433334444444444456665 4678999986321 111
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCc-HHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 155 VKKFIRRSPPDIVLYFERLDLISMGFSD-FPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 155 Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D-~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
+... .....+++++|.+++.... ... ......+.+. ......|+|+|.||+|+.
T Consensus 104 l~~~-~~~~a~~~ilVydvt~~~s-f~~~~~~~~~l~~~-~~~~~~piilVgNK~DL~ 158 (211)
T 2g3y_A 104 LHDH-CMQVGDAYLIVYSITDRAS-FEKASELRIQLRRA-RQTEDIPIILVGNKSDLV 158 (211)
T ss_dssp HHHC-CCCCCSEEEEEEETTCHHH-HHHHHHHHHHHHTS-GGGTTSCEEEEEECTTCG
T ss_pred HHHH-HHhhCCEEEEEEECCCHHH-HHHHHHHHHHHHHH-hCCCCCcEEEEEEChHHh
Confidence 1111 1125789999877764321 011 1122222221 112257999999999986
No 156
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.94 E-value=2.9e-10 Score=119.70 Aligned_cols=130 Identities=21% Similarity=0.291 Sum_probs=59.9
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCC------CccceEE--EEEeeEcC--eEEEEEECCCCCCcccch--
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQ------PATDCIR--EVKGSVNG--IKVTFIDTPGFLPSCVRN-- 144 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~------~tT~~~~--~~~~~~~G--~~v~LIDTPGl~d~~~~~-- 144 (704)
+..++|+|+|++|||||||+|.|+|...+..+... ..|.... .+.....+ ..++++||||++......
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 45689999999999999999999997544432211 1122111 12222222 478999999996431100
Q ss_pred -hhhhHHHHHHHHHHHh-----------cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 145 -VKRNRKIMLSVKKFIR-----------RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 145 -~~~n~~il~~Ik~~ik-----------~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
......+......++. ..+++++||++.....+.+..+. +.+... .. ..++++|+||+|+..
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~---~~l~~l-~~--~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV---AFMKAI-HN--KVNIVPVIAKADTLT 169 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHH---HHHHHH-TT--TSCEEEEECCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHH---HHHHHH-Hh--cCCEEEEEEeCCCCC
Confidence 0011111111112221 12457788887654332222232 333332 11 368999999999874
No 157
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.48 E-value=9e-11 Score=114.12 Aligned_cols=118 Identities=17% Similarity=0.077 Sum_probs=71.4
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
...++|+|+|.+|||||||+|++++..... ...+++.+........++ ..+.|+||||..... ..
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~--- 94 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPG--EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD--------RL--- 94 (204)
Confidence 457999999999999999999999765322 223344333333333344 456699999975331 11
Q ss_pred HHHHHhcCCCCEEEEEEeccCcc-CCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 155 VKKFIRRSPPDIVLYFERLDLIS-MGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 155 Ik~~ik~~~~dvVL~Vi~ld~~t-~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
...+++ .+|++++|++++... .......++..+..... ..|+++|+||+|+..
T Consensus 95 ~~~~~~--~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~~ 148 (204)
T 3th5_A 95 RPLSYP--QTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRD 148 (204)
Confidence 112222 569999997765432 11111123334433221 479999999999874
No 158
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.92 E-value=2.1e-09 Score=120.36 Aligned_cols=116 Identities=16% Similarity=0.157 Sum_probs=72.0
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCc------cccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKT------ETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRK 150 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a------~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~ 150 (704)
...++|+++|.+|+|||||+|+|++.... .....++.|.+........++..+.||||||.. .
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~-----------~ 85 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHA-----------D 85 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHH-----------H
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChH-----------H
Confidence 45689999999999999999999987621 112233456555545556688999999999972 2
Q ss_pred HHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 151 IMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 151 il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
....+...+ ..+|++++|++++..-. .+....+..+.. + ..|.|+|+||+|+.
T Consensus 86 ~~~~~~~~~--~~aD~~ilVvda~~g~~-~qt~e~l~~~~~-~----~ip~IvviNK~Dl~ 138 (482)
T 1wb1_A 86 LIRAVVSAA--DIIDLALIVVDAKEGPK-TQTGEHMLILDH-F----NIPIIVVITKSDNA 138 (482)
T ss_dssp HHHHHHHHT--TSCCEEEEEEETTTCSC-HHHHHHHHHHHH-T----TCCBCEEEECTTSS
T ss_pred HHHHHHHHH--hhCCEEEEEEecCCCcc-HHHHHHHHHHHH-c----CCCEEEEEECCCcc
Confidence 223333344 36799999987653211 123333433332 2 36779999999987
No 159
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.92 E-value=1.2e-09 Score=125.64 Aligned_cols=120 Identities=18% Similarity=0.159 Sum_probs=78.1
Q ss_pred CCCCeEEEEEeCCCCcHHHHHHHHhCCCCccccC------------------------------CCCccceEEEEEeeEc
Q 005287 76 LDFSIRILVLGKTGVGKSATINSIFDQTKTETDA------------------------------FQPATDCIREVKGSVN 125 (704)
Q Consensus 76 ~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~------------------------------~~~tT~~~~~~~~~~~ 125 (704)
....++|+++|.+|+|||||+|+|++........ ..+.|.+.........
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 3457899999999999999999999874432211 1456776666666778
Q ss_pred CeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCc--c----CCCCcHHHHHHHHHHhcccccc
Q 005287 126 GIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLI--S----MGFSDFPLLKLMTEVFGTAIWF 199 (704)
Q Consensus 126 G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~--t----~~~~D~~lLk~L~~~fG~~~~k 199 (704)
+.++.||||||..+. ...+...+ ..+|++|+|++++.. . ...+....+..+. .+| .+
T Consensus 244 ~~~~~iiDTPG~e~f-----------~~~~~~~~--~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~-~lg---i~ 306 (611)
T 3izq_1 244 RANFTIVDAPGHRDF-----------VPNAIMGI--SQADMAILCVDCSTNAFESGFDLDGQTKEHMLLAS-SLG---IH 306 (611)
T ss_dssp SCEEEEEECCSSSCH-----------HHHHTTTS--SCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHH-TTT---CC
T ss_pred CceEEEEECCCCccc-----------HHHHHHHH--hhcCceEEEEECCCCcccccchhhhHHHHHHHHHH-HcC---CC
Confidence 899999999998542 11122222 378999999877541 0 0012222222222 222 24
Q ss_pred cEEEEEEccCCCC
Q 005287 200 NTILVMTHSSSTL 212 (704)
Q Consensus 200 ~vIVVLTK~D~l~ 212 (704)
++|+|+||+|+..
T Consensus 307 ~iIVVvNKiDl~~ 319 (611)
T 3izq_1 307 NLIIAMNKMDNVD 319 (611)
T ss_dssp EEEEEEECTTTTT
T ss_pred eEEEEEecccccc
Confidence 6999999999873
No 160
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.88 E-value=5e-09 Score=105.15 Aligned_cols=118 Identities=14% Similarity=0.161 Sum_probs=71.2
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCcc-ceEEEEEeeEcC--eEEEEEECCCCCCcccchhhhhHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPAT-DCIREVKGSVNG--IKVTFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT-~~~~~~~~~~~G--~~v~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
..++|+|||.+|||||||+|.++....... ..+|. .+........++ ..+.|+||+|..... .+.
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~--~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~--------~l~-- 79 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNT--YQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFR--------SLI-- 79 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC------------CEEEEEECSSCEEEEEEECCSCTTTCG--------GGH--
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCC--cCCccceEEEEEEEEecceEEEEEEEECCCchhhh--------hHH--
Confidence 468999999999999999999986542211 12221 122223333444 467899999975432 111
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 155 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 155 Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
..+.+ .++++++|.+++....-..-...+..+....+. ..|+|+|.||+|+..
T Consensus 80 -~~~~~--~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~--~~piilVgNK~Dl~~ 132 (216)
T 4dkx_A 80 -PSYIR--DSAAAVVVYDITNVNSFQQTTKWIDDVRTERGS--DVIIMLVGNKTDLAD 132 (216)
T ss_dssp -HHHHT--TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT--SSEEEEEEECTTCGG
T ss_pred -HHHhc--cccEEEEEeecchhHHHHHHHHHHHHHHHhcCC--CCeEEEEeeccchHh
Confidence 12332 679999998876543211223455555555443 368999999999763
No 161
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.88 E-value=2.5e-09 Score=103.89 Aligned_cols=121 Identities=16% Similarity=0.037 Sum_probs=68.7
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCe--EEEEEECCCCCCcccchhhhhHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIMLSV 155 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~--~v~LIDTPGl~d~~~~~~~~n~~il~~I 155 (704)
..++|+|+|.+|||||||+|.+++.....++..++++.+.......++|. .+.++||+|...... . +..
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~---~----~~~-- 75 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENE---W----LHD-- 75 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----C---T----TGG--
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhh---h----HHH--
Confidence 35899999999999999999999754433332333333443444456665 457899999743100 0 000
Q ss_pred HHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 156 KKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 156 k~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
.+.+ .+|++++|.+++....-.....++..+.+... ....|+++|.||+|+.
T Consensus 76 -~~~~--~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~-~~~~piilV~NK~Dl~ 127 (192)
T 2cjw_A 76 -HCMQ--VGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLV 127 (192)
T ss_dssp -GHHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECTTCG
T ss_pred -hhcc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCeEEEEEechhhh
Confidence 1122 35888888777643210011123333333211 2247899999999976
No 162
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.87 E-value=3e-09 Score=115.95 Aligned_cols=120 Identities=14% Similarity=0.059 Sum_probs=70.2
Q ss_pred CCCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccc--------------eE-----EEEEeeEcCeEEEEEECCC
Q 005287 76 LDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATD--------------CI-----REVKGSVNGIKVTFIDTPG 136 (704)
Q Consensus 76 ~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~--------------~~-----~~~~~~~~G~~v~LIDTPG 136 (704)
....++|+++|.+|+|||||+|+|++........+...|. .. ...........+.||||||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 4567999999999999999999999864332111111110 00 0000011236899999999
Q ss_pred CCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 137 FLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 137 l~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
..+. ...+...+ ..+|++++|++++......+....+..+.. ++ .+|+|+|+||+|+..
T Consensus 85 h~~~-----------~~~~~~~~--~~~D~~ilVvda~~~~~~~qt~~~~~~~~~-~~---~~~iivviNK~Dl~~ 143 (403)
T 3sjy_A 85 HEVL-----------MATMLSGA--ALMDGAILVVAANEPFPQPQTREHFVALGI-IG---VKNLIIVQNKVDVVS 143 (403)
T ss_dssp CGGG-----------HHHHHHHH--TTCSEEEEEEETTSCSSCHHHHHHHHHHHH-HT---CCCEEEEEECGGGSC
T ss_pred cHHH-----------HHHHHHHH--hhCCEEEEEEECCCCCCcHHHHHHHHHHHH-cC---CCCEEEEEECccccc
Confidence 6332 12222333 368999999877643211122333333332 22 258999999999873
No 163
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.87 E-value=3e-09 Score=115.97 Aligned_cols=116 Identities=12% Similarity=0.064 Sum_probs=75.1
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCC---C----Cc-c---cc-----CCCCccceEEEEEeeEcCeEEEEEECCCCCCc
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQ---T----KT-E---TD-----AFQPATDCIREVKGSVNGIKVTFIDTPGFLPS 140 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~---~----~a-~---vs-----~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~ 140 (704)
...++|+++|.+|+|||||+|+|++. . .+ . .+ ...+.|.+.........+..+.||||||..+.
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 35689999999999999999999873 1 00 0 00 02344556555566667889999999998542
Q ss_pred ccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccccccc-EEEEEEccCCC
Q 005287 141 CVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFN-TILVMTHSSST 211 (704)
Q Consensus 141 ~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~-vIVVLTK~D~l 211 (704)
...+...+ ..+|++++|++++.... .+....+..+... ..| +|+|+||+|+.
T Consensus 89 -----------~~~~~~~~--~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~-----~ip~iivviNK~Dl~ 141 (405)
T 2c78_A 89 -----------IKNMITGA--AQMDGAILVVSAADGPM-PQTREHILLARQV-----GVPYIVVFMNKVDMV 141 (405)
T ss_dssp -----------HHHHHHHH--TTCSSEEEEEETTTCCC-HHHHHHHHHHHHT-----TCCCEEEEEECGGGC
T ss_pred -----------HHHHHHHH--HHCCEEEEEEECCCCCc-HHHHHHHHHHHHc-----CCCEEEEEEECcccc
Confidence 11222333 26799999987754321 1233334333322 356 88999999986
No 164
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.86 E-value=2.2e-09 Score=112.16 Aligned_cols=64 Identities=31% Similarity=0.389 Sum_probs=44.0
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccc
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVR 143 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~ 143 (704)
...++|+++|.||||||||||+|+|...+.++..+++|+..+.+.. +..+.++||||+......
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtpG~~~~~~~ 181 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV---GKELELLDTPGILWPKFE 181 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE---TTTEEEEECCCCCCSCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe---CCCEEEEECcCcCCCCCC
Confidence 4578999999999999999999999998889888888887764432 557899999999987543
No 165
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.86 E-value=1.9e-09 Score=122.14 Aligned_cols=114 Identities=9% Similarity=0.054 Sum_probs=75.5
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCcc---------------ccC------CCCccceEEEEEeeEcCeEEEEEECCCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTE---------------TDA------FQPATDCIREVKGSVNGIKVTFIDTPGF 137 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~---------------vs~------~~~tT~~~~~~~~~~~G~~v~LIDTPGl 137 (704)
..+|+|+|.+|+|||||+|+|++...++ +.. ..+.|.........+.+..+.||||||.
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~ 92 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGH 92 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCc
Confidence 4699999999999999999997332221 000 1234445555666778999999999999
Q ss_pred CCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 138 LPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 138 ~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
.+.. . ...++++ .+|++|+|++..... ......++..+... ..|+|+|+||+|+.
T Consensus 93 ~df~-------~----~~~~~l~--~aD~allVvDa~~g~-~~~t~~~~~~~~~~-----~iPiivviNK~Dl~ 147 (528)
T 3tr5_A 93 ADFT-------E----DTYRTLT--AVDSALMVIDAAKGV-EPRTIKLMEVCRLR-----HTPIMTFINKMDRD 147 (528)
T ss_dssp TTCC-------H----HHHHGGG--GCSEEEEEEETTTCS-CHHHHHHHHHHHTT-----TCCEEEEEECTTSC
T ss_pred hhHH-------H----HHHHHHH--hCCEEEEEEeCCCCC-CHHHHHHHHHHHHc-----CCCEEEEEeCCCCc
Confidence 7652 1 1234443 569999998765422 11233344333322 47999999999985
No 166
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.86 E-value=7.7e-09 Score=113.92 Aligned_cols=116 Identities=16% Similarity=0.088 Sum_probs=71.7
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccc----------cCC----------------------CCccceEEEEEeeEc
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTET----------DAF----------------------QPATDCIREVKGSVN 125 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~v----------s~~----------------------~~tT~~~~~~~~~~~ 125 (704)
..++|+++|.+|+|||||+|+|++...... +.. .+.|.+.........
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~ 102 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA 102 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECS
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecC
Confidence 458999999999999999999986542211 111 123334344445567
Q ss_pred CeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEE
Q 005287 126 GIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVM 205 (704)
Q Consensus 126 G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVL 205 (704)
+..+.||||||..+. ...+..++ ..+|++++|++++.... .+....+..+. .++ .+++|+|+
T Consensus 103 ~~~~~iiDtpGh~~f-----------~~~~~~~~--~~aD~~ilVvDa~~g~~-~qt~~~l~~~~-~~~---~~~iIvvi 164 (434)
T 1zun_B 103 KRKFIIADTPGHEQY-----------TRNMATGA--STCDLAIILVDARYGVQ-TQTRRHSYIAS-LLG---IKHIVVAI 164 (434)
T ss_dssp SEEEEEEECCCSGGG-----------HHHHHHHH--TTCSEEEEEEETTTCSC-HHHHHHHHHHH-HTT---CCEEEEEE
T ss_pred CceEEEEECCChHHH-----------HHHHHHHH--hhCCEEEEEEECCCCCc-HHHHHHHHHHH-HcC---CCeEEEEE
Confidence 889999999997432 11122333 37899999987754321 12223333332 222 24699999
Q ss_pred EccCCC
Q 005287 206 THSSST 211 (704)
Q Consensus 206 TK~D~l 211 (704)
||+|+.
T Consensus 165 NK~Dl~ 170 (434)
T 1zun_B 165 NKMDLN 170 (434)
T ss_dssp ECTTTT
T ss_pred EcCcCC
Confidence 999986
No 167
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.85 E-value=8.2e-09 Score=107.19 Aligned_cols=117 Identities=19% Similarity=0.081 Sum_probs=75.5
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEE--EEECCCCCCcccchhhhhHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVT--FIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~--LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
...++|+++|.+|||||||+|.+++.... ....++|..........++..+. |+||||.......
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------- 219 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRL----------- 219 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCC--CSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTT-----------
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCC--cccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHH-----------
Confidence 45689999999999999999999976532 23445565555555566666554 9999998543110
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcH--HHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 155 VKKFIRRSPPDIVLYFERLDLISMGFSDF--PLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 155 Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~--~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
...++ ..+|++++|++++.... ..+. .++..+..... ..|+++|+||+|+..
T Consensus 220 ~~~~~--~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~ 273 (332)
T 2wkq_A 220 RPLSY--PQTDVFLICFSLVSPAS-FHHVRAKWYPEVRHHCP---NTPIILVGTKLDLRD 273 (332)
T ss_dssp GGGGC--TTCSEEEEEEETTCHHH-HHHHHHTHHHHHHHHCT---TSCEEEEEECHHHHT
T ss_pred HHHhc--cCCCEEEEEEeCCCHHH-HHHHHHHHHHHHHhhCC---CCcEEEEEEchhccc
Confidence 11122 36799999987754321 1111 23344444322 579999999999863
No 168
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.84 E-value=5.8e-09 Score=113.59 Aligned_cols=115 Identities=14% Similarity=0.088 Sum_probs=73.0
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCC------cc----cc-----CCCCccceEEEEEeeEcCeEEEEEECCCCCCccc
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTK------TE----TD-----AFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCV 142 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~------a~----vs-----~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~ 142 (704)
..++|+++|.+|+|||||+|+|++... +. .. ...+.|.+.........+..+.||||||..+
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~--- 78 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHAD--- 78 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHH---
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHH---
Confidence 358999999999999999999987410 00 00 1234455554445555778999999999732
Q ss_pred chhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccccccc-EEEEEEccCCC
Q 005287 143 RNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFN-TILVMTHSSST 211 (704)
Q Consensus 143 ~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~-vIVVLTK~D~l 211 (704)
....+...+ ..+|++++|++++.... .+....+..+.. . ..| +|+|+||+|+.
T Consensus 79 --------f~~~~~~~~--~~aD~~ilVvda~~g~~-~qt~e~l~~~~~-~----~vp~iivviNK~Dl~ 132 (397)
T 1d2e_A 79 --------YVKNMITGT--APLDGCILVVAANDGPM-PQTREHLLLARQ-I----GVEHVVVYVNKADAV 132 (397)
T ss_dssp --------HHHHHHHTS--SCCSEEEEEEETTTCSC-HHHHHHHHHHHH-T----TCCCEEEEEECGGGC
T ss_pred --------HHHHHHhhH--hhCCEEEEEEECCCCCC-HHHHHHHHHHHH-c----CCCeEEEEEECcccC
Confidence 222233333 36899999987754221 122333433332 2 356 68999999986
No 169
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.83 E-value=1.6e-08 Score=110.50 Aligned_cols=120 Identities=13% Similarity=0.090 Sum_probs=70.5
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCcccc--CCCCccceEEEEEeeE---------------c--------CeEEEE
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETD--AFQPATDCIREVKGSV---------------N--------GIKVTF 131 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs--~~~~tT~~~~~~~~~~---------------~--------G~~v~L 131 (704)
...++|+++|.+++|||||+|+|+|....... ..++.|.+.......+ . ...+.|
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 34689999999999999999999986533321 1233454432211111 1 168999
Q ss_pred EECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 132 IDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 132 IDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
|||||.. .+...+.+.+ ..+|++++|++++......+....+..+. .++ .+|+|+|+||+|+.
T Consensus 86 iDtPGh~-----------~f~~~~~~~~--~~~D~~ilVvda~~g~~~~qt~e~l~~~~-~l~---~~~iivv~NK~Dl~ 148 (408)
T 1s0u_A 86 VDSPGHE-----------TLMATMLSGA--SLMDGAILVIAANEPCPQPQTKEHLMALE-ILG---IDKIIIVQNKIDLV 148 (408)
T ss_dssp EECSSHH-----------HHHHHHHTTC--SCCSEEEEEEETTSCSSCHHHHHHHHHHH-HTT---CCCEEEEEECTTSS
T ss_pred EECCCHH-----------HHHHHHHHhH--hhCCEEEEEEECCCCCCCchhHHHHHHHH-HcC---CCeEEEEEEccCCC
Confidence 9999952 2222222222 36799999987764211112223333332 222 25899999999987
Q ss_pred CC
Q 005287 212 LP 213 (704)
Q Consensus 212 ~p 213 (704)
.+
T Consensus 149 ~~ 150 (408)
T 1s0u_A 149 DE 150 (408)
T ss_dssp CT
T ss_pred CH
Confidence 53
No 170
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.81 E-value=8.4e-09 Score=120.36 Aligned_cols=117 Identities=17% Similarity=0.094 Sum_probs=74.4
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCcc-----c------cC------CCCccceEEEEEeeEcCeEEEEEECCCCCC
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTE-----T------DA------FQPATDCIREVKGSVNGIKVTFIDTPGFLP 139 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~-----v------s~------~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d 139 (704)
....+|+|+|.+|+|||||+|+|++..... + .+ ..+.|.........+.+..+.||||||..+
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 87 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD 87 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc
Confidence 345799999999999999999998421111 1 11 123444444455677899999999999976
Q ss_pred cccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 140 SCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 140 ~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
.. .. +.++++ .+|++|+|++..... ...+..+++.+... ..|+|+|+||+|+..
T Consensus 88 f~-------~~----~~~~l~--~aD~~llVvDa~~g~-~~~~~~~~~~~~~~-----~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 88 FT-------VE----VERSLR--VLDGAVTVLDAQSGV-EPQTETVWRQATTY-----GVPRIVFVNKMDKLG 141 (693)
T ss_dssp CC-------HH----HHHHHH--HCSEEEEEEETTTBS-CHHHHHHHHHHHHT-----TCCEEEEEECTTSTT
T ss_pred hH-------HH----HHHHHH--HCCEEEEEECCCCCC-cHHHHHHHHHHHHc-----CCCEEEEEECCCccc
Confidence 42 12 223343 369999998765422 12344455544432 479999999999873
No 171
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.81 E-value=1.2e-08 Score=98.88 Aligned_cols=117 Identities=17% Similarity=0.094 Sum_probs=70.5
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCe--EEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGI--KVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~--~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
.++|+|+|++|||||||+|.|+|........ +..+.+.......++|. .+.++||||...... . ..
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~-~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~--------~---~~ 72 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-STIGVEFATRSIQVDGKTIKAQIWDTAGQERYRR--------I---TS 72 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC----CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTC--------C---CH
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCC-CccceeEEEEEEEECCEEEEEEEEECCCchhhhh--------h---hH
Confidence 5899999999999999999999976443321 22223444445556775 567899999643211 0 01
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 157 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
.+.+ .++++++|.++.....-..-...+..+... .....++++|+||+|+.
T Consensus 73 ~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~i~~v~nK~Dl~ 123 (199)
T 2f9l_A 73 AYYR--GAVGALLVYDIAKHLTYENVERWLKELRDH--ADSNIVIMLVGNKSDLR 123 (199)
T ss_dssp HHHT--TCSEEEEEEETTCHHHHHTHHHHHHHHHHH--SCTTCEEEEEEECTTCG
T ss_pred HHHh--cCCEEEEEEECcCHHHHHHHHHHHHHHHHh--cCCCCeEEEEEECcccc
Confidence 1222 568999997765322100111233333332 12247899999999986
No 172
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.80 E-value=2.3e-08 Score=109.19 Aligned_cols=118 Identities=15% Similarity=0.083 Sum_probs=71.2
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCcccc--CCCCccceEEEEEeeE---------------c--------CeEEEE
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETD--AFQPATDCIREVKGSV---------------N--------GIKVTF 131 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs--~~~~tT~~~~~~~~~~---------------~--------G~~v~L 131 (704)
...++|+++|.+|+|||||+|+|+|....... ..++.|.+.......+ . ...+.|
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 34589999999999999999999986533221 1234455433222111 0 268999
Q ss_pred EECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 132 IDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 132 IDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
|||||.. .+...+.+.+. .+|++++|++++......+....+..+.. ++ .+++|+|+||+|+.
T Consensus 88 iDtPGh~-----------~f~~~~~~~~~--~~D~~ilVvda~~g~~~~qt~e~l~~~~~-~~---~~~iivviNK~Dl~ 150 (410)
T 1kk1_A 88 IDAPGHE-----------ALMTTMLAGAS--LMDGAILVIAANEPCPRPQTREHLMALQI-IG---QKNIIIAQNKIELV 150 (410)
T ss_dssp EECSSHH-----------HHHHHHHHCGG--GCSEEEEEEETTSCSSCHHHHHHHHHHHH-HT---CCCEEEEEECGGGS
T ss_pred EECCChH-----------HHHHHHHhhhh--hCCEEEEEEECCCCCCChhHHHHHHHHHH-cC---CCcEEEEEECccCC
Confidence 9999962 22223333332 57999999877642111122333333332 22 25899999999986
No 173
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.78 E-value=1.1e-08 Score=110.84 Aligned_cols=101 Identities=12% Similarity=0.204 Sum_probs=67.6
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHh
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 160 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik 160 (704)
+|+++|.+|+|||||+|+|+ ..+.|.+.........+..+.||||||..+.. .. +...++
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~-------~~----~~~~~~ 82 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTL-------KS----LITALN 82 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSSSEEEEEECTTTTTCH-------HH----HHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCCeEEEEEECCChHHHH-------HH----HHHHHH
Confidence 99999999999999999998 12445555556666778899999999986541 11 222232
Q ss_pred cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccE-EEEEE-ccCC
Q 005287 161 RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNT-ILVMT-HSSS 210 (704)
Q Consensus 161 ~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~v-IVVLT-K~D~ 210 (704)
.+|++++|++ +.. ...+....+..+. .+ ..|. |+|+| |+|+
T Consensus 83 --~aD~ailVvd-~~g-~~~qt~e~~~~~~-~~----~i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 83 --ISDIAVLCIP-PQG-LDAHTGECIIALD-LL----GFKHGIIALTRSDST 125 (370)
T ss_dssp --TCSEEEEEEC-TTC-CCHHHHHHHHHHH-HT----TCCEEEEEECCGGGS
T ss_pred --HCCEEEEEEc-CCC-CcHHHHHHHHHHH-Hc----CCCeEEEEEEeccCC
Confidence 6799999977 322 1112223333332 22 2455 89999 9997
No 174
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.77 E-value=5.9e-09 Score=112.96 Aligned_cols=89 Identities=17% Similarity=0.169 Sum_probs=57.3
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC-----------------eEEEEEECCCCCCcc
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG-----------------IKVTFIDTPGFLPSC 141 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G-----------------~~v~LIDTPGl~d~~ 141 (704)
.++|+|||.||||||||+|+|++.. +.++.++.+|..+......+.+ ..+.|+||||+....
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 3789999999999999999999977 5666677777765443333343 579999999998653
Q ss_pred cchhhhhHHHHHHHHHHHhcCCCCEEEEEEecc
Q 005287 142 VRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLD 174 (704)
Q Consensus 142 ~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld 174 (704)
... +.+...+..+++ .+|++++|+++.
T Consensus 81 ~~~----~gl~~~fl~~ir--~ad~il~VvD~~ 107 (363)
T 1jal_A 81 SKG----EGLGNKFLANIR--ETDAIGHVVRCF 107 (363)
T ss_dssp HHH----GGGTCCHHHHHH--TCSEEEEEEECS
T ss_pred ccc----chHHHHHHHHHH--hcCeEEEEEecC
Confidence 211 111112223343 679999997754
No 175
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.76 E-value=1.8e-09 Score=123.87 Aligned_cols=117 Identities=12% Similarity=0.038 Sum_probs=56.6
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCcccc------------------------------CCCCccceEEEEEeeEcCe
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETD------------------------------AFQPATDCIREVKGSVNGI 127 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs------------------------------~~~~tT~~~~~~~~~~~G~ 127 (704)
..++|+++|.+|+|||||+|.|++....... ..+++|.+.....+...+.
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~ 255 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKK 255 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCe
Confidence 4579999999999999999999753211110 0235566666666677889
Q ss_pred EEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCcc----C--CCCcHHHHHHHHHHhcccccccE
Q 005287 128 KVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLIS----M--GFSDFPLLKLMTEVFGTAIWFNT 201 (704)
Q Consensus 128 ~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t----~--~~~D~~lLk~L~~~fG~~~~k~v 201 (704)
.+.||||||..+....- ...+ ..+|++|+|++++... . ..+....+..+.. +| ..++
T Consensus 256 ~i~iiDTPGh~~f~~~~-----------~~~~--~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~-lg---ip~i 318 (592)
T 3mca_A 256 IYEIGDAPGHRDFISGM-----------IAGA--SSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA-LG---ISEI 318 (592)
T ss_dssp ---CCEEESSSEEEEEC-----------CC---------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH-SS---CCCE
T ss_pred EEEEEECCChHHHHHHH-----------HHHH--hhCCEEEEEEECCCCccccccccchHHHHHHHHHHH-cC---CCeE
Confidence 99999999987542110 0111 2579999998775321 1 2234444444433 22 1248
Q ss_pred EEEEEccCCC
Q 005287 202 ILVMTHSSST 211 (704)
Q Consensus 202 IVVLTK~D~l 211 (704)
|+|+||+|+.
T Consensus 319 IvviNKiDl~ 328 (592)
T 3mca_A 319 VVSVNKLDLM 328 (592)
T ss_dssp EEEEECGGGG
T ss_pred EEEEeccccc
Confidence 9999999976
No 176
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.76 E-value=3.6e-09 Score=117.62 Aligned_cols=117 Identities=20% Similarity=0.114 Sum_probs=72.7
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCC--Cc----------------------cc-c-----CCCCccceEEEEEeeEcCe
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQT--KT----------------------ET-D-----AFQPATDCIREVKGSVNGI 127 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~--~a----------------------~v-s-----~~~~tT~~~~~~~~~~~G~ 127 (704)
..++|+++|.+|+|||||+|+|++.. .. .+ + ...+.|.+.....+...+.
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~ 85 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence 45899999999999999999998641 00 00 0 0134565555556666788
Q ss_pred EEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCcc----C--CCCcHHHHHHHHHHhcccccccE
Q 005287 128 KVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLIS----M--GFSDFPLLKLMTEVFGTAIWFNT 201 (704)
Q Consensus 128 ~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t----~--~~~D~~lLk~L~~~fG~~~~k~v 201 (704)
.+.||||||..+. ...+...+ ..+|++++|++++... . ..+....+..+. ..+ -.++
T Consensus 86 ~~~iiDtPGh~~f-----------~~~~~~~~--~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~-~~~---v~~i 148 (458)
T 1f60_A 86 QVTVIDAPGHRDF-----------IKNMITGT--SQADCAILIIAGGVGEFEAGISKDGQTREHALLAF-TLG---VRQL 148 (458)
T ss_dssp EEEEEECCCCTTH-----------HHHHHHSS--SCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHH-HTT---CCEE
T ss_pred eEEEEECCCcHHH-----------HHHHHhhh--hhCCEEEEEEeCCcCccccccCcchhHHHHHHHHH-HcC---CCeE
Confidence 9999999997432 11222333 3789999998765321 0 001222222222 222 1358
Q ss_pred EEEEEccCCC
Q 005287 202 ILVMTHSSST 211 (704)
Q Consensus 202 IVVLTK~D~l 211 (704)
|+|+||+|+.
T Consensus 149 ivviNK~Dl~ 158 (458)
T 1f60_A 149 IVAVNKMDSV 158 (458)
T ss_dssp EEEEECGGGG
T ss_pred EEEEEccccc
Confidence 9999999986
No 177
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.75 E-value=1.9e-08 Score=113.99 Aligned_cols=115 Identities=11% Similarity=0.027 Sum_probs=71.2
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCcc---------------ccC------CCCccceEEEEEeeEcCeEEEEEECCC
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTE---------------TDA------FQPATDCIREVKGSVNGIKVTFIDTPG 136 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~---------------vs~------~~~tT~~~~~~~~~~~G~~v~LIDTPG 136 (704)
...+|+|+|.+|+|||||+|+|++..... +.+ ..+.|.........+.+..+.||||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 35899999999999999999998643211 000 112233333344567889999999999
Q ss_pred CCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 137 FLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 137 l~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
..+.. . .+.+++. .+|++++|+++...- .......+.... ....|+++|+||+|+.
T Consensus 92 ~~df~-------~----~~~~~l~--~aD~~IlVvDa~~g~----~~~t~~~~~~~~--~~~ipiivviNK~Dl~ 147 (529)
T 2h5e_A 92 HEDFS-------E----DTYRTLT--AVDCCLMVIDAAKGV----EDRTRKLMEVTR--LRDTPILTFMNKLDRD 147 (529)
T ss_dssp STTCC-------H----HHHHGGG--GCSEEEEEEETTTCS----CHHHHHHHHHHT--TTTCCEEEEEECTTSC
T ss_pred ChhHH-------H----HHHHHHH--HCCEEEEEEeCCccc----hHHHHHHHHHHH--HcCCCEEEEEcCcCCc
Confidence 96642 1 1233443 579999998765421 122222222221 1247899999999986
No 178
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.74 E-value=3e-08 Score=96.05 Aligned_cols=119 Identities=15% Similarity=0.106 Sum_probs=71.6
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEE--EEEECCCCCCcccchhhhhHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKV--TFIDTPGFLPSCVRNVKRNRKIMLS 154 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v--~LIDTPGl~d~~~~~~~~n~~il~~ 154 (704)
...++|+|+|++|||||||+|.|+|........ +..+.+.......++|..+ .++||||.......
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~-~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~----------- 94 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-STIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAI----------- 94 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCC-CCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCC-----------
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCC-CccceEEEEEEEEECCEEEEEEEEECCCCcchhhh-----------
Confidence 345899999999999999999999876443321 2223344444556677654 56999998653210
Q ss_pred HHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 155 VKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 155 Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
+..+. ..++++++|.+......-..-...+..+... .....++++|+||+|+.
T Consensus 95 ~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~i~~v~nK~Dl~ 147 (191)
T 1oix_A 95 TSAYY--RGAVGALLVYDIAKHLTYENVERWLKELRDH--ADSNIVIMLVGNKSDLR 147 (191)
T ss_dssp CHHHH--TTCCEEEEEEETTCHHHHHTHHHHHHHHHHH--SCTTCEEEEEEECGGGG
T ss_pred hHHHh--hcCCEEEEEEECcCHHHHHHHHHHHHHHHHh--cCCCCcEEEEEECcccc
Confidence 01122 2467888887654322100111223333322 12347899999999975
No 179
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.74 E-value=9.3e-09 Score=113.37 Aligned_cols=118 Identities=15% Similarity=0.109 Sum_probs=69.3
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCC--Ccc-----------------------c-----cCCCCccceEEEEEeeEcCe
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQT--KTE-----------------------T-----DAFQPATDCIREVKGSVNGI 127 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~--~a~-----------------------v-----s~~~~tT~~~~~~~~~~~G~ 127 (704)
..++|+++|.+|+|||||+|+|++.. ... . ....+.|.+.........+.
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 45899999999999999999998641 100 0 00234566665556667788
Q ss_pred EEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCcc------CCCCcHHHHHHHHHHhcccccccE
Q 005287 128 KVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLIS------MGFSDFPLLKLMTEVFGTAIWFNT 201 (704)
Q Consensus 128 ~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t------~~~~D~~lLk~L~~~fG~~~~k~v 201 (704)
.+.||||||..+.. ..+..++ ..+|++++|++++... ...+....+..+. .++ ..++
T Consensus 85 ~~~iiDtpG~~~f~-----------~~~~~~~--~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~-~~~---~~~i 147 (435)
T 1jny_A 85 FFTIIDAPGHRDFV-----------KNMITGA--SQADAAILVVSAKKGEYEAGMSVEGQTREHIILAK-TMG---LDQL 147 (435)
T ss_dssp EEEECCCSSSTTHH-----------HHHHHTS--SCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHH-HTT---CTTC
T ss_pred EEEEEECCCcHHHH-----------HHHHhhh--hhcCEEEEEEECCCCccccccccchHHHHHHHHHH-HcC---CCeE
Confidence 99999999986531 1222333 3789999998776421 1111222222222 222 2468
Q ss_pred EEEEEccCCCC
Q 005287 202 ILVMTHSSSTL 212 (704)
Q Consensus 202 IVVLTK~D~l~ 212 (704)
|+|+||+|+..
T Consensus 148 ivviNK~Dl~~ 158 (435)
T 1jny_A 148 IVAVNKMDLTE 158 (435)
T ss_dssp EEEEECGGGSS
T ss_pred EEEEEcccCCC
Confidence 99999999874
No 180
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.72 E-value=2.5e-08 Score=109.91 Aligned_cols=121 Identities=12% Similarity=0.156 Sum_probs=75.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC-eEEEEEECCCCCCcccchhhhhHHHHHHHHHHH
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG-IKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFI 159 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G-~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~i 159 (704)
.|+|+|.+|||||||+|+|++... .+...+.+|.........+.+ ..++++||||+.+............ .+.+
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~-~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~f----l~~~ 233 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHP-KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEF----LRHI 233 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCC-EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHH----HHHH
T ss_pred EEEEECCCCCcHHHHHHHHHcCCc-cccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHH----HHHH
Confidence 589999999999999999999764 344455666665555555554 7899999999976422110111122 1222
Q ss_pred hcCCCCEEEEEEeccCccCCCCcH-HHHHHHHHHhcc-cccccEEEEEEccCCC
Q 005287 160 RRSPPDIVLYFERLDLISMGFSDF-PLLKLMTEVFGT-AIWFNTILVMTHSSST 211 (704)
Q Consensus 160 k~~~~dvVL~Vi~ld~~t~~~~D~-~lLk~L~~~fG~-~~~k~vIVVLTK~D~l 211 (704)
.+++.+|+|++++ .....+. ...+.+... .. -..+|.++|+||+|..
T Consensus 234 --era~~lL~vvDls--~~~~~~ls~g~~el~~l-a~aL~~~P~ILVlNKlDl~ 282 (416)
T 1udx_A 234 --ARTRVLLYVLDAA--DEPLKTLETLRKEVGAY-DPALLRRPSLVALNKVDLL 282 (416)
T ss_dssp --TSSSEEEEEEETT--SCHHHHHHHHHHHHHHH-CHHHHHSCEEEEEECCTTS
T ss_pred --HHHHhhhEEeCCc--cCCHHHHHHHHHHHHHH-hHHhhcCCEEEEEECCChh
Confidence 3679999998876 1101111 122222221 11 1247999999999975
No 181
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.70 E-value=3.7e-08 Score=114.93 Aligned_cols=116 Identities=16% Similarity=0.024 Sum_probs=72.0
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCc-----cc------cC------CCCccceEEEEEeeEcCeEEEEEECCCCCCc
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKT-----ET------DA------FQPATDCIREVKGSVNGIKVTFIDTPGFLPS 140 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a-----~v------s~------~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~ 140 (704)
...+|+|+|.+|+|||||+|+|+..... .+ .+ ..+.|.........+.+..+.||||||..+.
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 90 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF 90 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTC
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccch
Confidence 4579999999999999999999832100 00 00 1234444445556678899999999999653
Q ss_pred ccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 141 CVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 141 ~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
. . ...++++ .+|++++|++...... ......+..+... ..|.++|+||+|...
T Consensus 91 ~-------~----~~~~~l~--~aD~~ilVvDa~~g~~-~~t~~~~~~~~~~-----~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 91 T-------I----EVERSMR--VLDGAIVVFDSSQGVE-PQSETVWRQAEKY-----KVPRIAFANKMDKTG 143 (691)
T ss_dssp H-------H----HHHHHHH--HCSEEEEEEETTTCSC-HHHHHHHHHHHHT-----TCCEEEEEECTTSTT
T ss_pred H-------H----HHHHHHH--HCCEEEEEEECCCCcc-hhhHHHHHHHHHc-----CCCEEEEEECCCccc
Confidence 1 1 1233443 4699999987654321 1233444443332 579999999999873
No 182
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.69 E-value=2.1e-08 Score=111.70 Aligned_cols=116 Identities=16% Similarity=0.074 Sum_probs=64.8
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCcc------------------------ccC------CCCccceEEEEEeeEcCe
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTE------------------------TDA------FQPATDCIREVKGSVNGI 127 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~------------------------vs~------~~~tT~~~~~~~~~~~G~ 127 (704)
..++|+++|.+|+|||||+|.|+...... +.+ ..+.|.+.....+..+++
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~ 121 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHR 121 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSE
T ss_pred CeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCe
Confidence 45899999999999999999997422100 000 123455554445566789
Q ss_pred EEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCcc----C--CCCcHHHHHHHHHHhccccccc-
Q 005287 128 KVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLIS----M--GFSDFPLLKLMTEVFGTAIWFN- 200 (704)
Q Consensus 128 ~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t----~--~~~D~~lLk~L~~~fG~~~~k~- 200 (704)
.+.||||||..+.. ..+...+ ..+|++++|++++... . ..+....+..+. .. ..|
T Consensus 122 ~~~iiDtPGh~~f~-----------~~~~~~~--~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~-~~----~vp~ 183 (467)
T 1r5b_A 122 RFSLLDAPGHKGYV-----------TNMINGA--SQADIGVLVISARRGEFEAGFERGGQTREHAVLAR-TQ----GINH 183 (467)
T ss_dssp EEEECCCCC----------------------T--TSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH-HT----TCSS
T ss_pred EEEEEECCCcHHHH-----------HHHHhhc--ccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHH-Hc----CCCE
Confidence 99999999985431 1122233 3689999998775421 0 112333333332 22 244
Q ss_pred EEEEEEccCCC
Q 005287 201 TILVMTHSSST 211 (704)
Q Consensus 201 vIVVLTK~D~l 211 (704)
+|+|+||+|+.
T Consensus 184 iivviNK~Dl~ 194 (467)
T 1r5b_A 184 LVVVINKMDEP 194 (467)
T ss_dssp EEEEEECTTST
T ss_pred EEEEEECccCC
Confidence 89999999986
No 183
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.67 E-value=4.3e-09 Score=113.08 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=22.6
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhC
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG 101 (704)
.....|+|+|+||||||||+|.|++
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHH
Confidence 3468999999999999999999986
No 184
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.66 E-value=6.8e-08 Score=110.71 Aligned_cols=64 Identities=20% Similarity=0.141 Sum_probs=45.3
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCcc-cc-CCCCccceEEEEEe---eEcCeEEEEEECCCCCCcc
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTE-TD-AFQPATDCIREVKG---SVNGIKVTFIDTPGFLPSC 141 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~-vs-~~~~tT~~~~~~~~---~~~G~~v~LIDTPGl~d~~ 141 (704)
...+|+|+|+||||||||+|+|+|..... +. ...++|+.+..+.. ...+..+.||||||+.+..
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~ 105 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVE 105 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGG
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCccc
Confidence 45799999999999999999999987542 21 12234444332211 1257799999999999764
No 185
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.66 E-value=1.3e-08 Score=114.58 Aligned_cols=115 Identities=15% Similarity=0.138 Sum_probs=77.1
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
.+.+|+++|.+|+|||||+|+|.+.... ....++.|.+...+...+++..++||||||..+....- .+
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~-~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~-----------~~ 70 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVA-SGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMR-----------AR 70 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHS-BTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSB-----------CS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCc-cccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHH-----------HH
Confidence 5678999999999999999999874322 22334556555545556678899999999986542110 11
Q ss_pred HHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
.+ ..+|++++|++++.... .+....+..+... ..|+|+|+||+|+..
T Consensus 71 ~~--~~aD~aILVVda~~g~~-~qT~e~l~~~~~~-----~vPiIVviNKiDl~~ 117 (501)
T 1zo1_I 71 GA--QATDIVVLVVAADDGVM-PQTIEAIQHAKAA-----QVPVVVAVNKIDKPE 117 (501)
T ss_dssp SS--BSCSSEEEEEETTTBSC-TTTHHHHHHHHHT-----TCCEEEEEECSSSST
T ss_pred HH--hhCCEEEEEeecccCcc-HHHHHHHHHHHhc-----CceEEEEEEeccccc
Confidence 11 25799999987754322 2344445444332 478999999999864
No 186
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.65 E-value=7.9e-08 Score=108.43 Aligned_cols=116 Identities=13% Similarity=0.085 Sum_probs=70.2
Q ss_pred CCCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCcc-ceEEEE------Ee----eEcCeEEEEEECCCCCCcccch
Q 005287 76 LDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPAT-DCIREV------KG----SVNGIKVTFIDTPGFLPSCVRN 144 (704)
Q Consensus 76 ~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT-~~~~~~------~~----~~~G~~v~LIDTPGl~d~~~~~ 144 (704)
....++|+++|.+|||||||+|+|++...... ..+++ ...... .. ...+..+.++||||.......
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~--~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~- 114 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPK--ESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHAS- 114 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTT-
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHH-
Confidence 45679999999999999999999998763321 11111 111111 01 112578999999996433211
Q ss_pred hhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 145 VKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 145 ~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
.. .+++ .+|++++|+++.... ....++..+..... ..|+|+|.||+|+..
T Consensus 115 ---~~-------~~l~--~~d~ii~V~D~s~~~---~~~~~~~~l~~~~~---~~pvilV~NK~Dl~~ 164 (535)
T 3dpu_A 115 ---HQ-------FFMT--RSSVYMLLLDSRTDS---NKHYWLRHIEKYGG---KSPVIVVMNKIDENP 164 (535)
T ss_dssp ---CH-------HHHH--SSEEEEEEECGGGGG---GHHHHHHHHHHHSS---SCCEEEEECCTTTCT
T ss_pred ---HH-------HHcc--CCcEEEEEEeCCCch---hHHHHHHHHHHhCC---CCCEEEEEECCCccc
Confidence 01 2232 579999998765432 33455666655422 479999999999874
No 187
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.64 E-value=1.4e-07 Score=110.41 Aligned_cols=117 Identities=15% Similarity=0.037 Sum_probs=73.6
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCCCcc-----c------cC------CCCccceEEEEEeeEcC-------eEEEEE
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQTKTE-----T------DA------FQPATDCIREVKGSVNG-------IKVTFI 132 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~~a~-----v------s~------~~~tT~~~~~~~~~~~G-------~~v~LI 132 (704)
....+|+|+|..|+|||||+|+|+...... + .+ ..+.|.........+.+ ..+.||
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 345799999999999999999997532111 0 00 12334444444555666 899999
Q ss_pred ECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 133 DTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 133 DTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
||||..+.. ..+.++++ .+|++|+|+++..... .....+++.+.. ...|.++|+||+|...
T Consensus 88 DTPG~~df~-----------~~~~~~l~--~aD~aIlVvDa~~gv~-~qt~~~~~~~~~-----~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 88 DTPGHVDFT-----------IEVERSMR--VLDGAVMVYCAVGGVQ-PQSETVWRQANK-----YKVPRIAFVNKMDRMG 148 (704)
T ss_pred eCCCccchH-----------HHHHHHHH--HCCEEEEEEeCCCCCc-HHHHHHHHHHHH-----cCCCEEEEEeCCCccc
Confidence 999996531 12233443 4699999987654321 122333433322 2478999999999763
No 188
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.64 E-value=2.1e-08 Score=109.75 Aligned_cols=92 Identities=18% Similarity=0.213 Sum_probs=49.8
Q ss_pred CCCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC-----------------eEEEEEECCCCC
Q 005287 76 LDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG-----------------IKVTFIDTPGFL 138 (704)
Q Consensus 76 ~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G-----------------~~v~LIDTPGl~ 138 (704)
....++|+|||.||||||||+|+|++... .++..+.+|.++......+.+ ..+.|+||||+.
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~ 97 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLV 97 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC--
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcc
Confidence 34568999999999999999999999875 666677777765554444333 359999999998
Q ss_pred CcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEecc
Q 005287 139 PSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLD 174 (704)
Q Consensus 139 d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld 174 (704)
..... .+.+...+..+++ .+|++++|+++.
T Consensus 98 ~~as~----~~glg~~~l~~ir--~aD~Il~VvD~~ 127 (396)
T 2ohf_A 98 KGAHN----GQGLGNAFLSHIS--ACDGIFHLTRAF 127 (396)
T ss_dssp -------------CCHHHHHHH--TSSSEEEEEEC-
T ss_pred cccch----hhHHHHHHHHHHH--hcCeEEEEEecC
Confidence 65321 1222222334444 679999997653
No 189
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.64 E-value=4.7e-08 Score=106.91 Aligned_cols=94 Identities=19% Similarity=0.188 Sum_probs=68.1
Q ss_pred CCCCCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcC-----------------eEEEEEECCCC
Q 005287 75 DLDFSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNG-----------------IKVTFIDTPGF 137 (704)
Q Consensus 75 ~~~~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G-----------------~~v~LIDTPGl 137 (704)
......+|+|+|++|||||||+|+|+|...+.++.++.+|.++......+.+ ..+.++||||+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 3345689999999999999999999998876788888888877666665655 46899999999
Q ss_pred CCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEecc
Q 005287 138 LPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLD 174 (704)
Q Consensus 138 ~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld 174 (704)
.............++ ..++ .+|++++|+++.
T Consensus 96 ~~~~s~~e~L~~~fl----~~ir--~~d~il~Vvd~~ 126 (392)
T 1ni3_A 96 TKGASTGVGLGNAFL----SHVR--AVDAIYQVVRAF 126 (392)
T ss_dssp CCCCCSSSSSCHHHH----HHHT--TCSEEEEEEECC
T ss_pred ccCCcHHHHHHHHHH----HHHH--HHHHHHHHHhcc
Confidence 865432211222222 2333 679999997653
No 190
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.64 E-value=2.8e-09 Score=120.88 Aligned_cols=115 Identities=17% Similarity=0.169 Sum_probs=76.0
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeE-cCeEEEEEECCCCCCcccchhhhhHHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSV-NGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVK 156 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~-~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik 156 (704)
.+.+|+|+|.+|+|||||+|+|.+...... ..++.|.+...+.... .+.+++||||||..+.... ..
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~-~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~-----------~~ 70 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAM-EAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAM-----------RA 70 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHS-SSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTS-----------BB
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccc-cCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHH-----------HH
Confidence 467899999999999999999998664433 3455666655444444 5778999999997543211 01
Q ss_pred HHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 157 KFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 157 ~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
+++ ..+|++++|++++... ..+..+.+..... ...|+|+|+||+|+..
T Consensus 71 ~~~--~~aD~vILVVDa~dg~----~~qt~e~l~~~~~--~~vPiIVViNKiDl~~ 118 (537)
T 3izy_P 71 RGT--QVTDIVILVVAADDGV----MKQTVESIQHAKD--AHVPIVLAINKCDKAE 118 (537)
T ss_dssp SSS--BSBSSCEEECBSSSCC----CHHHHHHHHHHHT--TTCCEEECCBSGGGTT
T ss_pred HHH--ccCCEEEEEEECCCCc----cHHHHHHHHHHHH--cCCcEEEEEecccccc
Confidence 122 2579999997765422 2233334433322 2478999999999864
No 191
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.63 E-value=3.1e-07 Score=103.45 Aligned_cols=120 Identities=13% Similarity=0.145 Sum_probs=71.7
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHh------CCCCcccc--CCCCccc----------eEEEEEe----------------
Q 005287 77 DFSIRILVLGKTGVGKSATINSIF------DQTKTETD--AFQPATD----------CIREVKG---------------- 122 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLl------G~~~a~vs--~~~~tT~----------~~~~~~~---------------- 122 (704)
..+..|+|+|.+|||||||+|.|+ |..+..++ .+.+.+. .+..+..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 346789999999999999999999 87766653 2222210 0111110
Q ss_pred -eEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccccccc-
Q 005287 123 -SVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFN- 200 (704)
Q Consensus 123 -~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~- 200 (704)
...+..++||||||..... .....++........+|.+++|++.... . .....++.+.+. .+
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~-------~~l~~el~~~~~~i~pd~vllVvDa~~g-~--~~~~~a~~~~~~------~~i 242 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQE-------DSLFEEMLQVANAIQPDNIVYVMDASIG-Q--ACEAQAKAFKDK------VDV 242 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTC-------HHHHHHHHHHHHHHCCSEEEEEEETTCC-T--THHHHHHHHHHH------HCC
T ss_pred HHHCCCcEEEEeCCCCcccc-------hhHHHHHHHHHhhhcCceEEEEEecccc-c--cHHHHHHHHHhh------cCc
Confidence 1157789999999997532 1222222222111268999999765432 1 244444444432 46
Q ss_pred EEEEEEccCCCC
Q 005287 201 TILVMTHSSSTL 212 (704)
Q Consensus 201 vIVVLTK~D~l~ 212 (704)
.++|+||+|...
T Consensus 243 ~gvVlNK~D~~~ 254 (504)
T 2j37_W 243 ASVIVTKLDGHA 254 (504)
T ss_dssp CCEEEECTTSCC
T ss_pred eEEEEeCCcccc
Confidence 489999999763
No 192
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.63 E-value=8.4e-08 Score=116.47 Aligned_cols=118 Identities=13% Similarity=0.053 Sum_probs=73.0
Q ss_pred CCCCCeEEEEEeCCCCcHHHHHHHHhCCC------Cc----ccc-----CCCCccceEEEEEeeEcCeEEEEEECCCCCC
Q 005287 75 DLDFSIRILVLGKTGVGKSATINSIFDQT------KT----ETD-----AFQPATDCIREVKGSVNGIKVTFIDTPGFLP 139 (704)
Q Consensus 75 ~~~~~lrIlVVGkTGvGKSTLINsLlG~~------~a----~vs-----~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d 139 (704)
.....++|+++|.+|+|||||+|+|++.. .+ ..+ ...+.|.+.........+..+.||||||..+
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed 371 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD 371 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence 34556899999999999999999998631 00 000 1123344443344455678999999999742
Q ss_pred cccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccccccc-EEEEEEccCCC
Q 005287 140 SCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFN-TILVMTHSSST 211 (704)
Q Consensus 140 ~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~-vIVVLTK~D~l 211 (704)
....+...+ ..+|++++|++++.... .+....+..+... ..| +|+|+||+|+.
T Consensus 372 -----------F~~~mi~ga--s~AD~aILVVDAtdGv~-~QTrEhL~ll~~l-----gIP~IIVVINKiDLv 425 (1289)
T 3avx_A 372 -----------YVKNMITGA--AQMDGAILVVAATDGPM-PQTREHILLGRQV-----GVPYIIVFLNKCDMV 425 (1289)
T ss_dssp -----------HHHHHHHTS--CCCSEEEEEEETTTCSC-TTHHHHHHHHHHH-----TCSCEEEEEECCTTC
T ss_pred -----------HHHHHHHHH--hhCCEEEEEEcCCccCc-HHHHHHHHHHHHc-----CCCeEEEEEeecccc
Confidence 222233333 37899999988764322 2444455444432 356 78999999986
No 193
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.57 E-value=1.1e-07 Score=109.30 Aligned_cols=115 Identities=15% Similarity=0.086 Sum_probs=63.3
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCcccc--------C------CCCccceEEEEEeeEc-----CeEEEEEECCCCCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETD--------A------FQPATDCIREVKGSVN-----GIKVTFIDTPGFLP 139 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs--------~------~~~tT~~~~~~~~~~~-----G~~v~LIDTPGl~d 139 (704)
-.+|+|+|.+|+|||||+|+|+........ + ..+.|.........+. +..+.||||||..+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 368999999999999999999863211110 0 1223433333344343 36889999999965
Q ss_pred cccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 140 SCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 140 ~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
.. . .+.++++ .+|++++|+++..... .+....+..... ...|+|+|+||+|+..
T Consensus 84 F~-------~----ev~~~l~--~aD~aILVVDa~~gv~-~qt~~~~~~~~~-----~~ipiIvViNKiDl~~ 137 (599)
T 3cb4_D 84 FS-------Y----EVSRSLA--ACEGALLVVDAGQGVE-AQTLANCYTAME-----MDLEVVPVLNKIDLPA 137 (599)
T ss_dssp GH-------H----HHHHHHH--HCSEEEEEEETTTCCC-THHHHHHHHHHH-----TTCEEEEEEECTTSTT
T ss_pred HH-------H----HHHHHHH--HCCEEEEEEECCCCCC-HHHHHHHHHHHH-----CCCCEEEeeeccCccc
Confidence 41 1 2333443 4599999987654321 123333332222 2478999999999863
No 194
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.57 E-value=6.1e-08 Score=105.19 Aligned_cols=88 Identities=18% Similarity=0.183 Sum_probs=58.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEee---------------------EcCeEEEEEECCCCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGS---------------------VNGIKVTFIDTPGFL 138 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~---------------------~~G~~v~LIDTPGl~ 138 (704)
++|++||.||||||||+|+|++.. +.+..++.+|......... ..+..+.|+||||+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 579999999999999999999874 4445555566543332222 234679999999998
Q ss_pred CcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEecc
Q 005287 139 PSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLD 174 (704)
Q Consensus 139 d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld 174 (704)
.............+ .+++ .+|++++|++..
T Consensus 81 ~~a~~~~~lg~~fl----~~ir--~ad~ii~VvD~~ 110 (368)
T 2dby_A 81 KGAHKGEGLGNQFL----AHIR--EVAAIAHVLRCF 110 (368)
T ss_dssp CCCCSSSCTTHHHH----HHHH--TCSEEEEEEECC
T ss_pred ccccccchHHHHHH----HHHH--hCCEEEEEEECC
Confidence 65322211222222 2333 679999997654
No 195
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.57 E-value=8.1e-08 Score=114.36 Aligned_cols=114 Identities=15% Similarity=0.123 Sum_probs=70.4
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCC---------------CCccceEEEEEeeEc----------------Ce
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAF---------------QPATDCIREVKGSVN----------------GI 127 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~---------------~~tT~~~~~~~~~~~----------------G~ 127 (704)
..+|+|+|.+|+|||||+|+|++......+.. .+.|.........+. +.
T Consensus 19 ~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 98 (842)
T 1n0u_A 19 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF 98 (842)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCc
Confidence 47999999999999999999987533222111 112222222222232 67
Q ss_pred EEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEc
Q 005287 128 KVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTH 207 (704)
Q Consensus 128 ~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK 207 (704)
.+.||||||..+.. .. +.++++ .+|++|+|+++..... .+...++..+.. ...|.|+|+||
T Consensus 99 ~i~liDTPG~~df~-------~~----~~~~l~--~aD~ailVvDa~~g~~-~qt~~~~~~~~~-----~~~p~ilviNK 159 (842)
T 1n0u_A 99 LINLIDSPGHVDFS-------SE----VTAALR--VTDGALVVVDTIEGVC-VQTETVLRQALG-----ERIKPVVVINK 159 (842)
T ss_dssp EEEEECCCCCCSSC-------HH----HHHHHH--TCSEEEEEEETTTBSC-HHHHHHHHHHHH-----TTCEEEEEEEC
T ss_pred eEEEEECcCchhhH-------HH----HHHHHH--hCCEEEEEEeCCCCCC-HHHHHHHHHHHH-----cCCCeEEEEEC
Confidence 89999999997752 11 233443 5699999987654321 123333333322 24789999999
Q ss_pred cCCC
Q 005287 208 SSST 211 (704)
Q Consensus 208 ~D~l 211 (704)
+|+.
T Consensus 160 ~D~~ 163 (842)
T 1n0u_A 160 VDRA 163 (842)
T ss_dssp HHHH
T ss_pred CCcc
Confidence 9976
No 196
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.56 E-value=1.1e-07 Score=109.17 Aligned_cols=114 Identities=14% Similarity=0.085 Sum_probs=64.2
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccc--------cC------CCCccceEEEEEeeEc-----CeEEEEEECCCCCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTET--------DA------FQPATDCIREVKGSVN-----GIKVTFIDTPGFLP 139 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~v--------s~------~~~tT~~~~~~~~~~~-----G~~v~LIDTPGl~d 139 (704)
-.+|+|+|.+|+|||||+|+|+....... .+ ..+.|.........+. ...+.||||||..+
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 46899999999999999999975321111 00 0122332222222222 26788999999965
Q ss_pred cccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 140 SCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 140 ~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
.. . .+.+++. .+|++++|+++.... ..+....+..... ...|+|+|+||+|+.
T Consensus 86 F~-------~----ev~r~l~--~aD~aILVVDa~~gv----~~qt~~~~~~a~~--~~ipiIvviNKiDl~ 138 (600)
T 2ywe_A 86 FS-------Y----EVSRALA--ACEGALLLIDASQGI----EAQTVANFWKAVE--QDLVIIPVINKIDLP 138 (600)
T ss_dssp GH-------H----HHHHHHH--TCSEEEEEEETTTBC----CHHHHHHHHHHHH--TTCEEEEEEECTTST
T ss_pred HH-------H----HHHHHHH--hCCEEEEEEECCCCc----cHHHHHHHHHHHH--CCCCEEEEEeccCcc
Confidence 41 1 2233443 569999998765432 1222322222211 247899999999986
No 197
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.55 E-value=8.3e-08 Score=97.95 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=24.4
Q ss_pred CCCCeEEEEEeCC---------CCcHHHHHHHHhCC
Q 005287 76 LDFSIRILVLGKT---------GVGKSATINSIFDQ 102 (704)
Q Consensus 76 ~~~~lrIlVVGkT---------GvGKSTLINsLlG~ 102 (704)
....++|+|+|.+ |||||||+|.+++.
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~ 51 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP 51 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence 4557999999999 99999999999984
No 198
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.54 E-value=2.7e-08 Score=102.83 Aligned_cols=60 Identities=28% Similarity=0.368 Sum_probs=42.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCccc
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCV 142 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~ 142 (704)
++|+++|.||||||||+|+|+|.....++..+++|+..+.+.. +..+.|+||||+.....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtpG~~~~~~ 159 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSL---ENGVKILDTPGILYKNI 159 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEEC---TTSCEEESSCEECCCCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEe---CCCEEEEECCCcccCcC
Confidence 7999999999999999999999988778777788887654442 45789999999998754
No 199
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.52 E-value=5.7e-08 Score=104.27 Aligned_cols=109 Identities=17% Similarity=0.117 Sum_probs=63.7
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHh------CCCCccccCCCCccc-------------------eEEEE-----------
Q 005287 77 DFSIRILVLGKTGVGKSATINSIF------DQTKTETDAFQPATD-------------------CIREV----------- 120 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLl------G~~~a~vs~~~~tT~-------------------~~~~~----------- 120 (704)
....+|+|+|.+|||||||+|.|+ |..+..+..-+..+. .....
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~ 156 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGV 156 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccch
Confidence 356899999999999999999996 333333321111111 00000
Q ss_pred ---------EeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHH
Q 005287 121 ---------KGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTE 191 (704)
Q Consensus 121 ---------~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~ 191 (704)
.....+..++||||||+.... .. .+ ..+|++++|++...... . ..++ .
T Consensus 157 ~~~t~d~i~~~~~~~~~~iiiDTpGi~~~~-------~~-------~~--~~aD~vl~V~d~~~~~~---~-~~l~---~ 213 (355)
T 3p32_A 157 TRATRETVVLLEAAGFDVILIETVGVGQSE-------VA-------VA--NMVDTFVLLTLARTGDQ---L-QGIK---K 213 (355)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSCSSHH-------HH-------HH--TTCSEEEEEEESSTTCT---T-TTCC---T
T ss_pred hHHHHHHHHHHhhCCCCEEEEeCCCCCcHH-------HH-------HH--HhCCEEEEEECCCCCcc---H-HHHH---H
Confidence 002257899999999986531 11 11 36799999987543221 1 1111 1
Q ss_pred HhcccccccEEEEEEccCCC
Q 005287 192 VFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 192 ~fG~~~~k~vIVVLTK~D~l 211 (704)
.-...|.++|+||+|..
T Consensus 214 ---~~~~~p~ivVlNK~Dl~ 230 (355)
T 3p32_A 214 ---GVLELADIVVVNKADGE 230 (355)
T ss_dssp ---TSGGGCSEEEEECCCGG
T ss_pred ---hHhhcCCEEEEECCCCc
Confidence 01135889999999975
No 200
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.52 E-value=1.3e-07 Score=101.01 Aligned_cols=108 Identities=15% Similarity=0.120 Sum_probs=62.5
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHh------CCCCccccCCCCccce--------------------EEEEE----------
Q 005287 78 FSIRILVLGKTGVGKSATINSIF------DQTKTETDAFQPATDC--------------------IREVK---------- 121 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLl------G~~~a~vs~~~~tT~~--------------------~~~~~---------- 121 (704)
....|+++|++|+|||||+|.|+ |..+..++.-+.+|.. +....
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~~ 134 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGAS 134 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchhH
Confidence 46789999999999999999996 3443433221111110 00000
Q ss_pred ---------eeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHH
Q 005287 122 ---------GSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEV 192 (704)
Q Consensus 122 ---------~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~ 192 (704)
..+.+.+++||||||+.+.. .. + . ..+|++++|++...... .+.++. ..
T Consensus 135 ~~~~~~~~~~~~~~~~i~liDTpG~~~~~-------~~----~---~--~~aD~vl~Vvd~~~~~~----~~~l~~--~~ 192 (341)
T 2p67_A 135 QRARELMLLCEAAGYDVVIVETVGVGQSE-------TE----V---A--RMVDCFISLQIAGGGDD----LQGIKK--GL 192 (341)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEECCTTHH-------HH----H---H--TTCSEEEEEECC----------CCCCH--HH
T ss_pred HHHHHHHHHhhccCCCEEEEeCCCccchH-------HH----H---H--HhCCEEEEEEeCCccHH----HHHHHH--hh
Confidence 01457899999999997541 11 1 1 37899999976643211 011111 11
Q ss_pred hcccccccEEEEEEccCCC
Q 005287 193 FGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 193 fG~~~~k~vIVVLTK~D~l 211 (704)
...|.++|+||+|..
T Consensus 193 ----~~~p~ivv~NK~Dl~ 207 (341)
T 2p67_A 193 ----MEVADLIVINKDDGD 207 (341)
T ss_dssp ----HHHCSEEEECCCCTT
T ss_pred ----hcccCEEEEECCCCC
Confidence 125789999999976
No 201
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.47 E-value=6.9e-08 Score=106.29 Aligned_cols=116 Identities=21% Similarity=0.173 Sum_probs=65.9
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccC----CCCccceEEEEEeeEcC-eEEEEEECCCCCCcccchhhhhHHHHH
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDA----FQPATDCIREVKGSVNG-IKVTFIDTPGFLPSCVRNVKRNRKIML 153 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~----~~~tT~~~~~~~~~~~G-~~v~LIDTPGl~d~~~~~~~~n~~il~ 153 (704)
...|+|+|++|+|||||+|.|+|......+. ...+|+.. +...... ..++++|+||+.... ..-.++++
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~--~v~q~~~~~~ltv~D~~g~~~~~----~~~~~~L~ 142 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMER--HPYKHPNIPNVVFWDLPGIGSTN----FPPDTYLE 142 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCC--EEEECSSCTTEEEEECCCGGGSS----CCHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeE--EeccccccCCeeehHhhcccchH----HHHHHHHH
Confidence 4689999999999999999999954322221 11223321 1112122 368999999996431 11122322
Q ss_pred HHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 154 SVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 154 ~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
.+. + ...+.+++ ++..... ..+..+++.+... .+|+++|+||.|.+.
T Consensus 143 ~~~--L--~~~~~~~~-lS~G~~~--kqrv~la~aL~~~-----~~p~~lV~tkpdlll 189 (413)
T 1tq4_A 143 KMK--F--YEYDFFII-ISATRFK--KNDIDIAKAISMM-----KKEFYFVRTKVDSDI 189 (413)
T ss_dssp HTT--G--GGCSEEEE-EESSCCC--HHHHHHHHHHHHT-----TCEEEEEECCHHHHH
T ss_pred HcC--C--CccCCeEE-eCCCCcc--HHHHHHHHHHHhc-----CCCeEEEEecCcccc
Confidence 221 1 13355444 3333211 2455566666653 479999999999763
No 202
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.43 E-value=4.6e-07 Score=104.06 Aligned_cols=115 Identities=16% Similarity=0.081 Sum_probs=68.9
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEee------------------EcCeEEEEEECCCCCC
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGS------------------VNGIKVTFIDTPGFLP 139 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~------------------~~G~~v~LIDTPGl~d 139 (704)
...+|+|+|.+|+|||||+|+|++...... ...+.|.+....... .....+.||||||..+
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~-e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASR-EAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC-----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccc-cCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 457999999999999999999997532211 111233332111111 1122599999999866
Q ss_pred cccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 140 SCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 140 ~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
....- .+.+ ..+|++++|++++..-. .+....+..+.. ...|+|+|+||+|+..
T Consensus 83 F~~~~-----------~r~~--~~aD~aILVvDa~~Gv~-~qT~e~l~~l~~-----~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 83 FTTLR-----------KRGG--ALADLAILIVDINEGFK-PQTQEALNILRM-----YRTPFVVAANKIDRIH 136 (594)
T ss_dssp CTTSB-----------CSSS--BSCSEEEEEEETTTCCC-HHHHHHHHHHHH-----TTCCEEEEEECGGGST
T ss_pred HHHHH-----------HHHH--hhCCEEEEEEECCCCcc-HhHHHHHHHHHH-----cCCeEEEEeccccccc
Confidence 42210 0122 25799999987764211 123344444433 2479999999999874
No 203
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.40 E-value=1e-06 Score=102.38 Aligned_cols=115 Identities=13% Similarity=0.183 Sum_probs=72.9
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccc--c---------C------CCCccceEEEEEeeEcCeEEEEEECCCCCCc
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTET--D---------A------FQPATDCIREVKGSVNGIKVTFIDTPGFLPS 140 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~v--s---------~------~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~ 140 (704)
...+|+|+|.+|+|||||+|.|++...... + . ..+.|...........+..+.|+||||..+.
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f 87 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF 87 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence 457899999999999999999984322110 0 0 0133444555566677899999999998543
Q ss_pred ccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 141 CVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 141 ~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
. . .+.++++ .+|++++|+++... .......+++.+... ..|.|+|+||+|..
T Consensus 88 ~-------~----~~~~~l~--~ad~~ilVvD~~~g-~~~qt~~~~~~~~~~-----~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 88 V-------G----EIRGALE--AADAALVAVSAEAG-VQVGTERAWTVAERL-----GLPRMVVVTKLDKG 139 (665)
T ss_dssp H-------H----HHHHHHH--HCSEEEEEEETTTC-SCHHHHHHHHHHHHT-----TCCEEEEEECGGGC
T ss_pred H-------H----HHHHHHh--hcCcEEEEEcCCcc-cchhHHHHHHHHHHc-----cCCEEEEecCCchh
Confidence 1 1 2233343 45899988775432 111223344444332 47999999999975
No 204
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.40 E-value=2.9e-07 Score=98.46 Aligned_cols=24 Identities=42% Similarity=0.592 Sum_probs=21.7
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhC
Q 005287 78 FSIRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG 101 (704)
....|+|+|++|+|||||+|.|+|
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999983
No 205
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.32 E-value=1.1e-06 Score=93.95 Aligned_cols=119 Identities=13% Similarity=0.171 Sum_probs=67.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHh
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR 160 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik 160 (704)
+|+++|.+||||||+++.+++............|......... ...++.||||||-....... + ....+.+
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~------l--~~~~yyr 71 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPS------Y--DSERLFK 71 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCS------H--HHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchh------h--hhhhhcc
Confidence 5899999999999999998876432211111222221111111 34789999999986542100 0 0112333
Q ss_pred cCCCCEEEEEEeccCccCCCCcHHHHHH-HHHHhcccccccEEEEEEccCCCC
Q 005287 161 RSPPDIVLYFERLDLISMGFSDFPLLKL-MTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 161 ~~~~dvVL~Vi~ld~~t~~~~D~~lLk~-L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
++++++||.++... . ......+.. +..........|+++|.||+|+..
T Consensus 72 --~a~~~IlV~Ditd~-~-~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~ 120 (331)
T 3r7w_B 72 --SVGALVYVIDSQDE-Y-INAITNLAMIIEYAYKVNPSINIEVLIHKVDGLS 120 (331)
T ss_dssp --TCSEEEEECCCSSC-T-THHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSC
T ss_pred --CCCEEEEEEECCch-H-HHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCc
Confidence 67999999766543 1 112222221 222111122478999999999874
No 206
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.31 E-value=4e-06 Score=93.03 Aligned_cols=119 Identities=14% Similarity=0.166 Sum_probs=71.3
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHh------CCCCcccc--CCCCcc----------ceEEEEE-----------------e
Q 005287 78 FSIRILVLGKTGVGKSATINSIF------DQTKTETD--AFQPAT----------DCIREVK-----------------G 122 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLl------G~~~a~vs--~~~~tT----------~~~~~~~-----------------~ 122 (704)
.+..|+++|.+||||||+++.|+ |..+..++ .+.+.. ..+..+. .
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999997 55544432 222210 0010110 0
Q ss_pred eEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEE
Q 005287 123 SVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTI 202 (704)
Q Consensus 123 ~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vI 202 (704)
...+..++||||||..... ...+.++........+|.+++|++.... .......+.+.+. .....
T Consensus 179 ~~~~~DvVIIDTaGrl~~d-------~~lm~el~~i~~~~~pd~vlLVvDA~~g---q~a~~~a~~f~~~-----~~i~g 243 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKED-------KALIEEMKQISNVIHPHEVILVIDGTIG---QQAYNQALAFKEA-----TPIGS 243 (443)
T ss_dssp HHTTCSEEEEECCCCSSCC-------HHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHHS-----CTTEE
T ss_pred HhCCCCEEEEECCCcccch-------HHHHHHHHHHHHhhcCceEEEEEeCCCc---hhHHHHHHHHHhh-----CCCeE
Confidence 1135789999999986542 2333334333333368999999765432 1233444444443 24678
Q ss_pred EEEEccCCC
Q 005287 203 LVMTHSSST 211 (704)
Q Consensus 203 VVLTK~D~l 211 (704)
+|+||+|..
T Consensus 244 VIlTKlD~~ 252 (443)
T 3dm5_A 244 IIVTKLDGS 252 (443)
T ss_dssp EEEECCSSC
T ss_pred EEEECCCCc
Confidence 999999976
No 207
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.27 E-value=2.3e-07 Score=93.61 Aligned_cols=31 Identities=16% Similarity=0.271 Sum_probs=26.3
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHh-----CCCCcccc
Q 005287 78 FSIRILVLGKTGVGKSATINSIF-----DQTKTETD 108 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLl-----G~~~a~vs 108 (704)
....++++|++||||||++|.|+ |.++..++
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 45788999999999999999998 87776664
No 208
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.24 E-value=3.5e-06 Score=95.83 Aligned_cols=113 Identities=10% Similarity=0.025 Sum_probs=72.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCcc---------------ccC------CCCccceEEEEEeeEcCeEEEEEECCCCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTE---------------TDA------FQPATDCIREVKGSVNGIKVTFIDTPGFL 138 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~---------------vs~------~~~tT~~~~~~~~~~~G~~v~LIDTPGl~ 138 (704)
=||+|+|..++|||||.-+|+-...++ +.+ -.+.|-......+.+++..+.||||||..
T Consensus 32 RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHv 111 (548)
T 3vqt_A 32 RTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQ 111 (548)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGG
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcH
Confidence 489999999999999999996222111 111 11223334445567899999999999998
Q ss_pred CcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 139 PSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 139 d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
|... ++.+.++ -.|.+++|++...--. .+-..+++...+. ..|.|+++||+|..
T Consensus 112 DF~~-----------Ev~raL~--~~DgAvlVvda~~GV~-~qT~~v~~~a~~~-----~lp~i~fINK~Dr~ 165 (548)
T 3vqt_A 112 DFSE-----------DTYRVLT--AVDSALVVIDAAKGVE-AQTRKLMDVCRMR-----ATPVMTFVNKMDRE 165 (548)
T ss_dssp GCSH-----------HHHHHHH--SCSEEEEEEETTTBSC-HHHHHHHHHHHHT-----TCCEEEEEECTTSC
T ss_pred HHHH-----------HHHHHHH--hcCceEEEeecCCCcc-cccHHHHHHHHHh-----CCceEEEEecccch
Confidence 8742 2334454 3588888866543211 1233444444443 58999999999975
No 209
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.24 E-value=3e-06 Score=97.43 Aligned_cols=82 Identities=24% Similarity=0.190 Sum_probs=42.3
Q ss_pred eEEEEEECCCCCCcccc--hhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEE
Q 005287 127 IKVTFIDTPGFLPSCVR--NVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILV 204 (704)
Q Consensus 127 ~~v~LIDTPGl~d~~~~--~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVV 204 (704)
..++++|.||+...... +......+...+.+++.. +..+++.++..+.... ....++.+...- ....++|+|
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~-~~~iil~vvt~~~d~a---~~~~l~la~~v~--~~g~rtI~V 220 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQR-QETISLVVVPSNVDIA---TTEALSMAQEVD--PEGDRTIGI 220 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTS-SSCCEEEEEESSSCTT---TCHHHHHHHHHC--SSCCSEEEE
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhc-CCCCceEEEeccchhc---cHHHHHHHHHHh--hcCCceEEE
Confidence 46899999999864322 212223455556665542 3345566654332211 112344444431 124789999
Q ss_pred EEccCCCCCC
Q 005287 205 MTHSSSTLPE 214 (704)
Q Consensus 205 LTK~D~l~pd 214 (704)
+||+|.+.+.
T Consensus 221 lTK~Dlv~~g 230 (608)
T 3szr_A 221 LTKPDLVDKG 230 (608)
T ss_dssp EECGGGSSSS
T ss_pred ecchhhcCcc
Confidence 9999998543
No 210
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.22 E-value=8.4e-07 Score=98.15 Aligned_cols=120 Identities=17% Similarity=0.198 Sum_probs=68.9
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCC------CCcccc--CCCC----------------------ccceEEEE----Eee
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQ------TKTETD--AFQP----------------------ATDCIREV----KGS 123 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~------~~a~vs--~~~~----------------------tT~~~~~~----~~~ 123 (704)
.+..|+++|++||||||++|.|.+. .+..++ ...+ +|.+.... ...
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~ 177 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEK 177 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999763 232221 1100 22221100 001
Q ss_pred EcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEE
Q 005287 124 VNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTIL 203 (704)
Q Consensus 124 ~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIV 203 (704)
..+..++||||||.... ....+.++........+|.+++|++..... + .+..+ +.|.........+
T Consensus 178 ~~~~D~vIIDT~G~~~~-------~~~l~~~l~~i~~~~~~d~vllVvda~~g~----~--~~~~~-~~~~~~~~~i~gv 243 (432)
T 2v3c_C 178 FKKADVLIIDTAGRHKE-------EKGLLEEMKQIKEITNPDEIILVIDGTIGQ----Q--AGIQA-KAFKEAVGEIGSI 243 (432)
T ss_dssp TSSCSEEEEECCCSCSS-------HHHHHHHHHHTTSSSCCSEEEEEEEGGGGG----G--HHHHH-HHHHTTSCSCEEE
T ss_pred hhCCCEEEEcCCCCccc-------cHHHHHHHHHHHHHhcCcceeEEeeccccH----H--HHHHH-HHHhhcccCCeEE
Confidence 25678999999999653 133444444433333789999997654221 2 22222 3333221023899
Q ss_pred EEEccCCC
Q 005287 204 VMTHSSST 211 (704)
Q Consensus 204 VLTK~D~l 211 (704)
|+||+|..
T Consensus 244 VlnK~D~~ 251 (432)
T 2v3c_C 244 IVTKLDGS 251 (432)
T ss_dssp EEECSSSC
T ss_pred EEeCCCCc
Confidence 99999975
No 211
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.13 E-value=2.4e-06 Score=83.76 Aligned_cols=24 Identities=21% Similarity=0.547 Sum_probs=21.8
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
..+|+|+|.+|||||||+|.|++.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 478999999999999999999864
No 212
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.04 E-value=1.6e-05 Score=88.06 Aligned_cols=119 Identities=17% Similarity=0.209 Sum_probs=70.2
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHh------CCCCcccc--CCCCccc----------eEEEEE-----------------e
Q 005287 78 FSIRILVLGKTGVGKSATINSIF------DQTKTETD--AFQPATD----------CIREVK-----------------G 122 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLl------G~~~a~vs--~~~~tT~----------~~~~~~-----------------~ 122 (704)
.+..|+++|++||||||+++.|+ |..+..++ .+.+... .+..+. .
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 46789999999999999999997 54443321 1111000 000000 0
Q ss_pred eEcCeEEEEEECCCCCC--cccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhccccccc
Q 005287 123 SVNGIKVTFIDTPGFLP--SCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFN 200 (704)
Q Consensus 123 ~~~G~~v~LIDTPGl~d--~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~ 200 (704)
...+..++||||||... .. ...+.++........++.+++|++.... ......++.+.+.+ ..
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d-------~~lm~el~~i~~~~~pd~vlLVlDa~~g---q~a~~~a~~f~~~~-----~~ 240 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEE-------TKLLEEMKEMYDVLKPDDVILVIDASIG---QKAYDLASRFHQAS-----PI 240 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCT-------THHHHHHHHHHHHHCCSEEEEEEEGGGG---GGGHHHHHHHHHHC-----SS
T ss_pred HhcCCCEEEEECCCCccccCC-------HHHHHHHHHHHHhhCCcceEEEEeCccc---hHHHHHHHHHhccc-----CC
Confidence 11367899999999854 21 2223333333332367888888655422 13445556665543 46
Q ss_pred EEEEEEccCCC
Q 005287 201 TILVMTHSSST 211 (704)
Q Consensus 201 vIVVLTK~D~l 211 (704)
..+|+||.|..
T Consensus 241 ~gVIlTKlD~~ 251 (433)
T 3kl4_A 241 GSVIITKMDGT 251 (433)
T ss_dssp EEEEEECGGGC
T ss_pred cEEEEeccccc
Confidence 78999999965
No 213
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.04 E-value=1.7e-06 Score=100.03 Aligned_cols=113 Identities=17% Similarity=0.101 Sum_probs=74.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCc-----cc------cCC------CCccceEEEEEeeEcCeEEEEEECCCCCCcccc
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKT-----ET------DAF------QPATDCIREVKGSVNGIKVTFIDTPGFLPSCVR 143 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a-----~v------s~~------~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~ 143 (704)
||+|+|..++|||||.-+|+-.... .+ .+. .+.|-......+.+++..++||||||..|..
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~-- 81 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL-- 81 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH--
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH--
Confidence 6899999999999999999621111 11 111 0234444455667889999999999998763
Q ss_pred hhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCCC
Q 005287 144 NVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSSTL 212 (704)
Q Consensus 144 ~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l~ 212 (704)
.++.+.++ -.|.+++|++...-- ..+...+++...+. ..|.|+++||.|...
T Consensus 82 ---------~Ev~raL~--~~DgavlVVDa~~GV-~~qT~~v~~~a~~~-----~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 82 ---------AEVYRSLS--VLDGAILLISAKDGV-QAQTRILFHALRKM-----GIPTIFFINKIDQNG 133 (638)
T ss_dssp ---------HHHHHHHT--TCSEEECCEESSCTT-CSHHHHHHHHHHHH-----TCSCEECCEECCSSS
T ss_pred ---------HHHHHHHH--HhCEEEEEEeCCCCC-cHHHHHHHHHHHHc-----CCCeEEEEecccccc
Confidence 23445554 459888887654321 12344556655554 478899999999763
No 214
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.03 E-value=2.4e-07 Score=98.27 Aligned_cols=58 Identities=26% Similarity=0.381 Sum_probs=35.0
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCC-------CccceEEEEEeeEcCeEEEEEECCCCCCc
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQ-------PATDCIREVKGSVNGIKVTFIDTPGFLPS 140 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~-------~tT~~~~~~~~~~~G~~v~LIDTPGl~d~ 140 (704)
.-.++|+|++|||||||+|.|+|.....++.+. .+|+....+. .. .-.++||||+...
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~--~~--~g~v~dtpg~~~~ 237 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIH--TS--GGLVADTPGFSSL 237 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEE--ET--TEEEESSCSCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhh--cC--CEEEecCCCcccc
Confidence 458999999999999999999998765554332 3454433222 21 2389999999764
No 215
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=97.92 E-value=2.7e-05 Score=91.08 Aligned_cols=113 Identities=16% Similarity=0.087 Sum_probs=67.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCcc-----------ccC------CCCccceEEEEEeeEc-------CeEEEEEECC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTE-----------TDA------FQPATDCIREVKGSVN-------GIKVTFIDTP 135 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~-----------vs~------~~~tT~~~~~~~~~~~-------G~~v~LIDTP 135 (704)
=||+|+|..++|||||.-+|+-....+ +.+ -.+.|-....+...+. +..+.|||||
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP 93 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP 93 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence 389999999999999999986321111 000 0122333333344443 5789999999
Q ss_pred CCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 136 GFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 136 Gl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
|..|.. .++.+.++. .|.+|+|++...- ...+...+++...+. ..|.|+++||.|..
T Consensus 94 GHvDF~-----------~Ev~~aLr~--~DgavlvVDaveG-V~~qT~~v~~~a~~~-----~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 94 GHVDFT-----------IEVERSLRV--LDGAVVVFCGTSG-VEPQSETVWRQANKY-----GVPRIVYVNKMDRQ 150 (709)
T ss_dssp SCTTCH-----------HHHHHHHHH--CSEEEEEEETTTC-SCHHHHHHHHHHHHH-----TCCEEEEEECSSST
T ss_pred CCcccH-----------HHHHHHHHH--hCeEEEEEECCCC-CchhHHHHHHHHHHc-----CCCeEEEEcccccc
Confidence 998863 223344443 3888888655321 111334455555544 47999999999976
No 216
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.91 E-value=1.6e-05 Score=88.25 Aligned_cols=63 Identities=17% Similarity=0.153 Sum_probs=42.1
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCC---------------CCccccCCCCccceEEEEEeeE---------c--CeEEEE
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQ---------------TKTETDAFQPATDCIREVKGSV---------N--GIKVTF 131 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~---------------~~a~vs~~~~tT~~~~~~~~~~---------~--G~~v~L 131 (704)
....|+|+|++++|||||+|.|+|. ..... +..++|+.+......+ . ...++|
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f-~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvl 144 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGF-SWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSS-CSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhhccccccccccccccccccee-cCCCCCCCceeEEEEecCccccccCCCCcceEEE
Confidence 3467999999999999999999974 11111 2233444444333222 1 357999
Q ss_pred EECCCCCCcc
Q 005287 132 IDTPGFLPSC 141 (704)
Q Consensus 132 IDTPGl~d~~ 141 (704)
+||||+.+..
T Consensus 145 lDTeG~~~~~ 154 (447)
T 3q5d_A 145 MDTQGTFDSQ 154 (447)
T ss_dssp EEEECCCSSH
T ss_pred EcCCcccccc
Confidence 9999998773
No 217
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.76 E-value=5.8e-05 Score=79.33 Aligned_cols=120 Identities=15% Similarity=0.188 Sum_probs=65.9
Q ss_pred CeEEEEEeCCCCcHHHHHHHHh------CCCCcccc--CCCCccc----------eEEEEEe-----------------e
Q 005287 79 SIRILVLGKTGVGKSATINSIF------DQTKTETD--AFQPATD----------CIREVKG-----------------S 123 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLl------G~~~a~vs--~~~~tT~----------~~~~~~~-----------------~ 123 (704)
.-.|+++|++|+||||+++.|. |..+..++ ...+.+. .+..+.. .
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5578899999999999999997 44433332 1111110 0000000 1
Q ss_pred EcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEE
Q 005287 124 VNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTIL 203 (704)
Q Consensus 124 ~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIV 203 (704)
..+..++||||||..... .+...+.++.+......+|.+++|++.... ......++.+.+. .....+
T Consensus 178 ~~~~D~ViIDTpg~~~~~-----~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~~-----~~i~gv 244 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYG-----EEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQA-----SKIGTI 244 (297)
T ss_dssp HTTCSEEEEECCCSCCTT-----CHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHHT-----CTTEEE
T ss_pred hCCCCEEEEeCCCCcccc-----cHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHhh-----CCCCEE
Confidence 156689999999997510 112233333322112267889998766431 1233333333321 223788
Q ss_pred EEEccCCC
Q 005287 204 VMTHSSST 211 (704)
Q Consensus 204 VLTK~D~l 211 (704)
|+||+|..
T Consensus 245 Vlnk~D~~ 252 (297)
T 1j8m_F 245 IITKMDGT 252 (297)
T ss_dssp EEECGGGC
T ss_pred EEeCCCCC
Confidence 99999964
No 218
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.64 E-value=0.00054 Score=75.73 Aligned_cols=119 Identities=18% Similarity=0.167 Sum_probs=67.3
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHh-------CCCCcccc--CCCCccce----------EEEEE-----------------
Q 005287 78 FSIRILVLGKTGVGKSATINSIF-------DQTKTETD--AFQPATDC----------IREVK----------------- 121 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLl-------G~~~a~vs--~~~~tT~~----------~~~~~----------------- 121 (704)
.+..|+++|++||||||++..|+ |..+..++ ...+.+.+ +..+.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 45689999999999999999997 76655442 22221110 00000
Q ss_pred eeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccE
Q 005287 122 GSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNT 201 (704)
Q Consensus 122 ~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~v 201 (704)
....+..++||||||..... .....++........++.+++|++.... . .....++.+... . ...
T Consensus 179 ~~~~~~D~VIIDTpG~l~~~-------~~l~~~L~~~~~~~~p~~vllVvda~~g-~--~~~~~~~~f~~~----l-~i~ 243 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHVD-------EAMMDEIKQVHASINPVETLFVVDAMTG-Q--DAANTAKAFNEA----L-PLT 243 (433)
T ss_dssp HHHTTCSEEEEECCCCCTTC-------HHHHHHHHHHHHHSCCSEEEEEEETTBC-T--THHHHHHHHHHH----S-CCC
T ss_pred HHhCCCCEEEEECCCccccc-------HHHHHHHHHHHHhhcCcceeEEeecchh-H--HHHHHHHHHhcc----C-CCe
Confidence 01146789999999986431 2233333332222368899998765422 1 223333333222 1 224
Q ss_pred EEEEEccCCC
Q 005287 202 ILVMTHSSST 211 (704)
Q Consensus 202 IVVLTK~D~l 211 (704)
.+|+||+|..
T Consensus 244 gvVlnK~D~~ 253 (433)
T 2xxa_A 244 GVVLTKVDGD 253 (433)
T ss_dssp CEEEECTTSS
T ss_pred EEEEecCCCC
Confidence 5799999965
No 219
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.60 E-value=0.00016 Score=81.29 Aligned_cols=122 Identities=23% Similarity=0.274 Sum_probs=65.1
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCC------Ccccc-C-CCCc------c---c-eEEEEEe-----------------
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQT------KTETD-A-FQPA------T---D-CIREVKG----------------- 122 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~------~a~vs-~-~~~t------T---~-~~~~~~~----------------- 122 (704)
..-.|+|+|.+|+|||||++.|.|.. +...+ + +... + + .+..+..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a 371 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAA 371 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHH
Confidence 45579999999999999999997631 11111 1 1100 0 0 0111100
Q ss_pred eEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHh---cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccc
Q 005287 123 SVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR---RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWF 199 (704)
Q Consensus 123 ~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik---~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k 199 (704)
...+..++||||+|....... .... +..+.+.++ ...++-+|+|++.. +. ......++.+.+.++
T Consensus 372 ~~~~~DvVLIDTaGrl~~~~~---lm~E-L~kiv~iar~l~~~~P~evLLvLDat--tG-q~al~~ak~f~~~~~----- 439 (503)
T 2yhs_A 372 KARNIDVLIADTAGRLQNKSH---LMEE-LKKIVRVMKKLDVEAPHEVMLTIDAS--TG-QNAVSQAKLFHEAVG----- 439 (503)
T ss_dssp HHTTCSEEEECCCCSCCCHHH---HHHH-HHHHHHHHHTTCTTCSSEEEEEEEGG--GT-HHHHHHHHHHHHHTC-----
T ss_pred HhcCCCEEEEeCCCccchhhh---HHHH-HHHHHHHHHHhccCCCCeeEEEecCc--cc-HHHHHHHHHHHhhcC-----
Confidence 014567899999999654211 1111 122223332 12477788885543 21 123344555555433
Q ss_pred cEEEEEEccCCC
Q 005287 200 NTILVMTHSSST 211 (704)
Q Consensus 200 ~vIVVLTK~D~l 211 (704)
...+|+||.|..
T Consensus 440 itgvIlTKLD~t 451 (503)
T 2yhs_A 440 LTGITLTKLDGT 451 (503)
T ss_dssp CSEEEEECGGGC
T ss_pred CCEEEEEcCCCc
Confidence 457899999964
No 220
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.59 E-value=0.00014 Score=76.81 Aligned_cols=24 Identities=38% Similarity=0.499 Sum_probs=21.3
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhC
Q 005287 78 FSIRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG 101 (704)
..-.|+|+|++|+|||||++.|.|
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 355899999999999999999975
No 221
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.48 E-value=0.00014 Score=77.56 Aligned_cols=120 Identities=18% Similarity=0.236 Sum_probs=65.3
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCC------Ccccc-C-CCCccc----------eEEEEE-----------------
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQT------KTETD-A-FQPATD----------CIREVK----------------- 121 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~------~a~vs-~-~~~tT~----------~~~~~~----------------- 121 (704)
..+-.|+++|++|+|||||++.|.|.. +...+ + +..... .+..+.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 346789999999999999999998632 11111 1 000000 000000
Q ss_pred eeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccE
Q 005287 122 GSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNT 201 (704)
Q Consensus 122 ~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~v 201 (704)
....+..+.++||+|....... . -..+..+.+.+ .+|-.+++++.. +. ..-...++.+.+.+ ...
T Consensus 207 ~~~~~~d~vliDtaG~~~~~~~---l-~~eL~~i~ral---~~de~llvLDa~--t~-~~~~~~~~~~~~~~-----~it 271 (328)
T 3e70_C 207 AKARGIDVVLIDTAGRSETNRN---L-MDEMKKIARVT---KPNLVIFVGDAL--AG-NAIVEQARQFNEAV-----KID 271 (328)
T ss_dssp HHHHTCSEEEEEECCSCCTTTC---H-HHHHHHHHHHH---CCSEEEEEEEGG--GT-THHHHHHHHHHHHS-----CCC
T ss_pred HHhccchhhHHhhccchhHHHH---H-HHHHHHHHHHh---cCCCCEEEEecH--HH-HHHHHHHHHHHHhc-----CCC
Confidence 0013456789999999654221 1 11222334444 578888885533 22 12333444444432 355
Q ss_pred EEEEEccCCC
Q 005287 202 ILVMTHSSST 211 (704)
Q Consensus 202 IVVLTK~D~l 211 (704)
++++||.|..
T Consensus 272 ~iilTKlD~~ 281 (328)
T 3e70_C 272 GIILTKLDAD 281 (328)
T ss_dssp EEEEECGGGC
T ss_pred EEEEeCcCCc
Confidence 8899999964
No 222
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.47 E-value=9.4e-05 Score=77.65 Aligned_cols=58 Identities=24% Similarity=0.323 Sum_probs=38.2
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCC-------CccceEEEEEeeEcCeEEEEEECCCCCCc
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQ-------PATDCIREVKGSVNGIKVTFIDTPGFLPS 140 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~-------~tT~~~~~~~~~~~G~~v~LIDTPGl~d~ 140 (704)
.-.++++|++|||||||+|.|+ .....++.+. .+|+....... .+ --.++||||+...
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~--~~-~g~v~d~pg~~~~ 229 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPF--GK-GSFVGDTPGFSKV 229 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEE--TT-TEEEESSCCCSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEc--CC-CcEEEECcCcCcC
Confidence 3478999999999999999999 6554444332 24544433322 11 1378999999743
No 223
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.43 E-value=0.00023 Score=69.77 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=22.0
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
..+|+|+|.+|||||||+|.|+..
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 589999999999999999999864
No 224
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.41 E-value=8.5e-05 Score=77.81 Aligned_cols=59 Identities=27% Similarity=0.277 Sum_probs=37.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccccCCC-------CccceEEEEEeeEcCeEEEEEECCCCCCcc
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTETDAFQ-------PATDCIREVKGSVNGIKVTFIDTPGFLPSC 141 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~-------~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~ 141 (704)
-.++++|++|+|||||+|.|.|.....++.+. .+|+.......... -.++||||+....
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~---g~v~q~p~~~~~~ 235 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG---GYVVDTPGFANLE 235 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTS---CEEESSCSSTTCC
T ss_pred CeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCC---CEEEECcCCCccC
Confidence 36899999999999999999998765544322 23433322222112 3789999987553
No 225
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.36 E-value=0.0004 Score=72.88 Aligned_cols=119 Identities=16% Similarity=0.117 Sum_probs=66.1
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCC-------CCcccc--CCCCccce----------EEEEE-----------eeEcCe
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQ-------TKTETD--AFQPATDC----------IREVK-----------GSVNGI 127 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~-------~~a~vs--~~~~tT~~----------~~~~~-----------~~~~G~ 127 (704)
..-.|+++|++|+||||+++.|.+. .+..++ .+.+...+ +.... ....+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~ 183 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEY 183 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCC
Confidence 3558999999999999999998642 222221 11111100 00000 012456
Q ss_pred EEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEc
Q 005287 128 KVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTH 207 (704)
Q Consensus 128 ~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK 207 (704)
.++|+||||+.... ...+.++.+.+....++.+++|++... ....+..+.+.|. . ....-+|+||
T Consensus 184 dlvIiDT~G~~~~~-------~~~~~el~~~l~~~~~~~~~lVl~at~------~~~~~~~~~~~~~-~-l~~~giVltk 248 (296)
T 2px0_A 184 DHVFVDTAGRNFKD-------PQYIDELKETIPFESSIQSFLVLSATA------KYEDMKHIVKRFS-S-VPVNQYIFTK 248 (296)
T ss_dssp SEEEEECCCCCTTS-------HHHHHHHHHHSCCCTTEEEEEEEETTB------CHHHHHHHTTTTS-S-SCCCEEEEEC
T ss_pred CEEEEeCCCCChhh-------HHHHHHHHHHHhhcCCCeEEEEEECCC------CHHHHHHHHHHHh-c-CCCCEEEEeC
Confidence 89999999997432 233444444443334677778864331 1233444555554 1 2345678899
Q ss_pred cCCC
Q 005287 208 SSST 211 (704)
Q Consensus 208 ~D~l 211 (704)
.|..
T Consensus 249 ~D~~ 252 (296)
T 2px0_A 249 IDET 252 (296)
T ss_dssp TTTC
T ss_pred CCcc
Confidence 9965
No 226
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.34 E-value=7.5e-05 Score=80.71 Aligned_cols=58 Identities=26% Similarity=0.352 Sum_probs=37.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCC-ccccCCC---C----ccceEEEEEeeEcCeEEEEEECCCCCCc
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTK-TETDAFQ---P----ATDCIREVKGSVNGIKVTFIDTPGFLPS 140 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~-a~vs~~~---~----tT~~~~~~~~~~~G~~v~LIDTPGl~d~ 140 (704)
-.++|+|++|||||||+|.|+|... ..++.+. + +|+....+... .+ ..++||||+.+.
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~-q~--~~l~dtpgv~e~ 281 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFP-HG--GDVIDSPGVREF 281 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECT-TS--CEEEECHHHHTC
T ss_pred CEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEEC-CC--CEecCcccHHHh
Confidence 3789999999999999999999876 5443322 1 23333322221 12 268999998654
No 227
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.23 E-value=0.0017 Score=70.19 Aligned_cols=25 Identities=20% Similarity=0.452 Sum_probs=21.8
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCC
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
.+-.|+++|++|||||||++.|+|.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 3457999999999999999999763
No 228
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.17 E-value=0.0016 Score=68.50 Aligned_cols=25 Identities=20% Similarity=0.452 Sum_probs=21.7
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCC
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
.+-.|+++|++|+|||||++.|+|.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999763
No 229
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=97.06 E-value=0.0039 Score=69.37 Aligned_cols=64 Identities=22% Similarity=0.205 Sum_probs=43.0
Q ss_pred CeEEEEEeCCCCcHHHHHHHHh-------C----------CCCcccc-CCCCccceEEEEE----eeE-cC--eEEEEEE
Q 005287 79 SIRILVLGKTGVGKSATINSIF-------D----------QTKTETD-AFQPATDCIREVK----GSV-NG--IKVTFID 133 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLl-------G----------~~~a~vs-~~~~tT~~~~~~~----~~~-~G--~~v~LID 133 (704)
-..|.|+|.+++|||+|+|.|+ | ...+.++ ...++|+-+-... ... .| ..+.|+|
T Consensus 67 v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllD 146 (457)
T 4ido_A 67 VVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMD 146 (457)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEE
T ss_pred eEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEe
Confidence 3567799999999999999775 2 2344442 3456676554322 111 33 4699999
Q ss_pred CCCCCCccc
Q 005287 134 TPGFLPSCV 142 (704)
Q Consensus 134 TPGl~d~~~ 142 (704)
|.|+++...
T Consensus 147 TEG~~d~~~ 155 (457)
T 4ido_A 147 TQGTFDSQS 155 (457)
T ss_dssp ECCBTCTTC
T ss_pred ccCCCCccc
Confidence 999988744
No 230
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.05 E-value=0.00023 Score=75.18 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=20.8
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhC
Q 005287 78 FSIRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG 101 (704)
.+-.|+++|++|+||||++..|.+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH
Confidence 345789999999999999999965
No 231
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.99 E-value=0.0021 Score=70.91 Aligned_cols=119 Identities=18% Similarity=0.135 Sum_probs=63.5
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhC------CCCcccc--CCCCccc----------eEEEEEe---------------e-
Q 005287 78 FSIRILVLGKTGVGKSATINSIFD------QTKTETD--AFQPATD----------CIREVKG---------------S- 123 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG------~~~a~vs--~~~~tT~----------~~~~~~~---------------~- 123 (704)
.+-.|+++|++|+||||++..|.+ ..+..++ ...+.+. .+..+.. .
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 455788999999999999999864 2222211 1111110 0000110 0
Q ss_pred -EcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEE
Q 005287 124 -VNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTI 202 (704)
Q Consensus 124 -~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vI 202 (704)
..+..++||||||..... ...+.++........+|.+++|++... . ......++.+... .....
T Consensus 177 ~~~~~DvVIIDTaG~l~~d-------~~l~~el~~i~~~~~pd~vlLVvDa~t--g-q~av~~a~~f~~~-----l~i~G 241 (425)
T 2ffh_A 177 RLEARDLILVDTAGRLQID-------EPLMGELARLKEVLGPDEVLLVLDAMT--G-QEALSVARAFDEK-----VGVTG 241 (425)
T ss_dssp HHTTCSEEEEECCCCSSCC-------HHHHHHHHHHHHHHCCSEEEEEEEGGG--T-THHHHHHHHHHHH-----TCCCE
T ss_pred HHCCCCEEEEcCCCccccc-------HHHHHHHHHhhhccCCceEEEEEeccc--h-HHHHHHHHHHHhc-----CCceE
Confidence 145679999999986431 223333332222226788888876542 1 1222233333222 12467
Q ss_pred EEEEccCCC
Q 005287 203 LVMTHSSST 211 (704)
Q Consensus 203 VVLTK~D~l 211 (704)
+|+||.|..
T Consensus 242 VIlTKlD~~ 250 (425)
T 2ffh_A 242 LVLTKLDGD 250 (425)
T ss_dssp EEEESGGGC
T ss_pred EEEeCcCCc
Confidence 899999864
No 232
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=96.81 E-value=0.0084 Score=64.28 Aligned_cols=84 Identities=18% Similarity=0.180 Sum_probs=50.3
Q ss_pred ceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccC------CCC-cHHHHH
Q 005287 115 DCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISM------GFS-DFPLLK 187 (704)
Q Consensus 115 ~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~------~~~-D~~lLk 187 (704)
..+........+..+.++||+|-... ...+ ..|. ..+++++||.+++.+.. ... -...+.
T Consensus 149 iGi~~~~~~~~~v~l~iwDtaGQe~~--------R~~w---~~yy--~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~ 215 (340)
T 4fid_A 149 TGIHEYDFVVKDIPFHLIDVGGQRSE--------RKXW---VSFF--SDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIA 215 (340)
T ss_dssp CSCEEEEEESSSCEEEEEECCSCHHH--------HHHH---HTTS--CSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHH
T ss_pred eeeEEEEEEeeeeeeccccCCCcccc--------cccH---HHHh--ccCCEEEEEEECCccccccccccccchHHHHHH
Confidence 33455556678899999999997211 2222 1233 37899999998863211 001 123444
Q ss_pred HHHHHhccc--ccccEEEEEEccCCC
Q 005287 188 LMTEVFGTA--IWFNTILVMTHSSST 211 (704)
Q Consensus 188 ~L~~~fG~~--~~k~vIVVLTK~D~l 211 (704)
++.+..... ...|+|+++||.|+.
T Consensus 216 ~~~~i~~~~~~~~~piiLv~NK~DL~ 241 (340)
T 4fid_A 216 VFKDIMTNEFLKGAVKLIFLNKMDLF 241 (340)
T ss_dssp HHHHHHHCGGGTTSEEEEEEECHHHH
T ss_pred HHHHHhhhhccCCCeEEEEEECchhh
Confidence 444443322 246899999999976
No 233
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.73 E-value=0.0016 Score=69.08 Aligned_cols=122 Identities=18% Similarity=0.179 Sum_probs=65.2
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCC------CCcccc-CC-CCc-------------cceEEEEEe--------------
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQ------TKTETD-AF-QPA-------------TDCIREVKG-------------- 122 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~------~~a~vs-~~-~~t-------------T~~~~~~~~-------------- 122 (704)
..-.|+|+|++|+||||++..|.+. .+..++ +. .+. ...+..+..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~~~~ 183 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVFDA 183 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHHHHH
Confidence 3457999999999999999988642 222221 11 110 001111100
Q ss_pred ----eEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHh---cCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcc
Q 005287 123 ----SVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIR---RSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGT 195 (704)
Q Consensus 123 ----~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik---~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~ 195 (704)
...+..++||||||...... ..-..+..+.+.+. ...+|.+++|++.. +. ...+..+.. |..
T Consensus 184 l~~~~~~~yD~VIIDTpg~l~~~~----~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~--~~----~~~l~~~~~-~~~ 252 (320)
T 1zu4_A 184 IKKAKEQNYDLLLIDTAGRLQNKT----NLMAELEKMNKIIQQVEKSAPHEVLLVIDAT--TG----QNGVIQAEE-FSK 252 (320)
T ss_dssp HHHHHHTTCSEEEEECCCCGGGHH----HHHHHHHHHHHHHHTTCTTCCSEEEEEEEGG--GT----HHHHHHHHH-HTT
T ss_pred HHHHHhcCCCEEEEcCCCcccccH----HHHHHHHHHHHHHhcccCCCCceEEEEEECC--Cc----HHHHHHHHH-Hhh
Confidence 01356899999999864310 00111222333332 12478889997654 21 234555543 433
Q ss_pred cccccEEEEEEccCCC
Q 005287 196 AIWFNTILVMTHSSST 211 (704)
Q Consensus 196 ~~~k~vIVVLTK~D~l 211 (704)
. ....-+|+||.|..
T Consensus 253 ~-~~i~GvVltk~d~~ 267 (320)
T 1zu4_A 253 V-ADVSGIILTKMDST 267 (320)
T ss_dssp T-SCCCEEEEECGGGC
T ss_pred c-CCCcEEEEeCCCCC
Confidence 2 23456899999954
No 234
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.70 E-value=9.6e-05 Score=73.48 Aligned_cols=58 Identities=22% Similarity=0.328 Sum_probs=40.4
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCC-ccccCCCCccceEEEEEeeEcCeEEEEEECCCCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTK-TETDAFQPATDCIREVKGSVNGIKVTFIDTPGFL 138 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~-a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~ 138 (704)
.-.|+|+|++|||||||+|.|++... ........+|+.... ++.+|..+.++|++.|.
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~--gE~~G~~y~fvs~~~f~ 77 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRK--SEEDGKEYHFISTEEMT 77 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCT--TCCTTSSCEECCHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcC--CeeccccceeccHHHhh
Confidence 34688999999999999999997654 222344455665543 33577777777776663
No 235
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.56 E-value=0.0011 Score=69.30 Aligned_cols=119 Identities=18% Similarity=0.128 Sum_probs=63.2
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCC------CCcccc-CC-CCccc----------eEEEEEe---------------e-
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQ------TKTETD-AF-QPATD----------CIREVKG---------------S- 123 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~------~~a~vs-~~-~~tT~----------~~~~~~~---------------~- 123 (704)
..-.|+++|++|+||||++..|.+. .+...+ +. .+.+. ....+.. .
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 4457889999999999999998642 211111 11 11000 0001100 0
Q ss_pred -EcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEE
Q 005287 124 -VNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTI 202 (704)
Q Consensus 124 -~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vI 202 (704)
..+..++||||||..... ...+.++........++.+++|++.... ...++.+. .|... ....-
T Consensus 177 ~~~~~D~viiDtpp~~~~d-------~~~~~~l~~~~~~~~~~~~~lv~~~~~~------~~~~~~~~-~~~~~-~~i~g 241 (295)
T 1ls1_A 177 RLEARDLILVDTAGRLQID-------EPLMGELARLKEVLGPDEVLLVLDAMTG------QEALSVAR-AFDEK-VGVTG 241 (295)
T ss_dssp HHHTCCEEEEECCCCSSCC-------HHHHHHHHHHHHHHCCSEEEEEEEGGGT------HHHHHHHH-HHHHH-TCCCE
T ss_pred HhCCCCEEEEeCCCCcccc-------HHHHHHHHHHhhhcCCCEEEEEEeCCCc------HHHHHHHH-HHhhc-CCCCE
Confidence 145689999999886431 2223333333322357888888765421 22333332 22221 13456
Q ss_pred EEEEccCCC
Q 005287 203 LVMTHSSST 211 (704)
Q Consensus 203 VVLTK~D~l 211 (704)
+|+||.|..
T Consensus 242 ivlnk~d~~ 250 (295)
T 1ls1_A 242 LVLTKLDGD 250 (295)
T ss_dssp EEEECGGGC
T ss_pred EEEECCCCC
Confidence 899999864
No 236
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.24 E-value=0.0011 Score=63.64 Aligned_cols=24 Identities=25% Similarity=0.555 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~ 103 (704)
-.|+|+|++|||||||+|.|++..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 368999999999999999998854
No 237
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.66 E-value=0.0046 Score=59.86 Aligned_cols=24 Identities=29% Similarity=0.740 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~ 103 (704)
.+++|+|++|+|||||++.|+|.-
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998864
No 238
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.64 E-value=0.0042 Score=60.63 Aligned_cols=23 Identities=26% Similarity=0.622 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
-.++|+|++|+|||||+|.|+|.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999999874
No 239
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.45 E-value=0.0054 Score=59.92 Aligned_cols=25 Identities=20% Similarity=0.418 Sum_probs=21.9
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~ 103 (704)
.=.++|+|++|+|||||+|.|.|..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3468999999999999999999864
No 240
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.25 E-value=0.0069 Score=58.17 Aligned_cols=24 Identities=13% Similarity=0.354 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~ 103 (704)
-.|+|+|++|+|||||++.|.|..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 468999999999999999998853
No 241
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.24 E-value=0.013 Score=55.69 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.9
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
.-.|+|+|++|+||||+++.|.+.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 457999999999999999999986
No 242
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.17 E-value=0.0075 Score=57.92 Aligned_cols=23 Identities=30% Similarity=0.642 Sum_probs=20.6
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~ 103 (704)
.|+|+|++|+|||||++.|++..
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 37899999999999999999764
No 243
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.16 E-value=0.0076 Score=59.77 Aligned_cols=23 Identities=26% Similarity=0.634 Sum_probs=20.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~ 103 (704)
.++|+|++|+|||||++.|+|..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999999854
No 244
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.10 E-value=0.0097 Score=60.08 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=21.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
.++|+|++|+|||||++.|.|-..
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 689999999999999999999653
No 245
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.02 E-value=0.011 Score=59.25 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=21.6
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
.++|+|++|+|||||++.|+|-..
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 578999999999999999999653
No 246
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.00 E-value=0.075 Score=53.76 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=21.1
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
.-.|+|.|+||+|||+++.+|...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 456999999999999999999754
No 247
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.98 E-value=0.0091 Score=59.75 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=22.6
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
.--++|+|++|||||||++.|+|...
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 35689999999999999999998654
No 248
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.94 E-value=0.01 Score=58.10 Aligned_cols=26 Identities=27% Similarity=0.606 Sum_probs=22.5
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
.--|+|+|++|||||||++.|++...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 35689999999999999999987653
No 249
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.88 E-value=0.011 Score=57.65 Aligned_cols=27 Identities=22% Similarity=0.196 Sum_probs=23.3
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCCC
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~~ 103 (704)
.....|+|+|++|+|||||++.|.|.-
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999998753
No 250
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.82 E-value=0.014 Score=59.02 Aligned_cols=23 Identities=26% Similarity=0.606 Sum_probs=21.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~ 103 (704)
.++|+|++|+|||||++.|+|-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999975
No 251
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.81 E-value=0.013 Score=55.69 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=19.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHhC
Q 005287 80 IRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG 101 (704)
--++++|++|+|||||++.+++
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHcc
Confidence 3588999999999999998764
No 252
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.74 E-value=0.098 Score=57.87 Aligned_cols=73 Identities=15% Similarity=0.376 Sum_probs=47.1
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
.+--|++.|+||+|||+|+.+|+++- |.++..++.+.+....... .....+.+-.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~----------------------~~~~~~v~~s~l~sk~~Ge---se~~ir~~F~ 268 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATI----------------------GANFIFSPASGIVDKYIGE---SARIIREMFA 268 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH----------------------TCEEEEEEGGGTCCSSSSH---HHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh----------------------CCCEEEEehhhhccccchH---HHHHHHHHHH
Confidence 34579999999999999999998642 3455667777776553322 1222222222
Q ss_pred HHhcCCCCEEEEEEeccCc
Q 005287 158 FIRRSPPDIVLYFERLDLI 176 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~ 176 (704)
..+ ....+|||++.+|..
T Consensus 269 ~A~-~~~P~IifiDEiDai 286 (437)
T 4b4t_L 269 YAK-EHEPCIIFMDEVDAI 286 (437)
T ss_dssp HHH-HSCSEEEEEECCCSS
T ss_pred HHH-hcCCceeeeeccccc
Confidence 222 245789999988864
No 253
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.74 E-value=0.015 Score=58.92 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=22.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
=.++|+|++|+|||||++.|+|-..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3689999999999999999999753
No 254
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.73 E-value=0.015 Score=56.37 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=22.2
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCC
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
....|+|+|++|+|||||++.|.|.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999885
No 255
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.71 E-value=0.14 Score=53.59 Aligned_cols=22 Identities=32% Similarity=0.742 Sum_probs=20.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~ 102 (704)
.++|.|++|+|||||++.+++.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999754
No 256
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.70 E-value=0.014 Score=59.91 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=21.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~ 103 (704)
.++|+|++|+|||||++.|+|-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999999965
No 257
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.70 E-value=0.015 Score=59.36 Aligned_cols=24 Identities=42% Similarity=0.538 Sum_probs=21.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
.++|+|++|+|||||++.|+|-..
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 688999999999999999999653
No 258
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.70 E-value=0.24 Score=49.10 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=21.1
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhC
Q 005287 78 FSIRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG 101 (704)
.+..|++.|+||+|||++..+|..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999975
No 259
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.68 E-value=0.013 Score=60.15 Aligned_cols=24 Identities=54% Similarity=0.606 Sum_probs=21.6
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
.-.|+|+|++|+|||||++.|+|.
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHh
Confidence 457999999999999999999874
No 260
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.67 E-value=0.016 Score=58.79 Aligned_cols=24 Identities=38% Similarity=0.480 Sum_probs=21.6
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
.++|+|++|+|||||++.|+|-..
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999999653
No 261
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.66 E-value=0.016 Score=59.01 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=21.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~ 103 (704)
.++|+|++|+|||||++.|+|-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999975
No 262
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.64 E-value=0.016 Score=59.77 Aligned_cols=24 Identities=21% Similarity=0.409 Sum_probs=21.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
.++|+|++|+|||||++.|+|-..
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 688999999999999999999653
No 263
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.63 E-value=0.016 Score=58.12 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=21.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~ 103 (704)
.++|+|++|+|||||++.|+|..
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999965
No 264
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.59 E-value=0.016 Score=60.03 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=21.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
.++|+|++|+|||||++.|+|-..
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 589999999999999999999653
No 265
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.59 E-value=0.016 Score=57.93 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
.++|+|++|+|||||++.|+|-..
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999999753
No 266
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=94.56 E-value=0.13 Score=49.07 Aligned_cols=68 Identities=12% Similarity=0.033 Sum_probs=38.2
Q ss_pred CeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEE
Q 005287 126 GIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVM 205 (704)
Q Consensus 126 G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVL 205 (704)
...++|||||+.... .... .+. .+|.+++++..+... . .-..+++.+.+........++.+|+
T Consensus 75 ~yD~viiD~~~~~~~---------~~~~----~l~--~ad~viiv~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~~vv~ 137 (206)
T 4dzz_A 75 DYDFAIVDGAGSLSV---------ITSA----AVM--VSDLVIIPVTPSPLD-F-SAAGSVVTVLEAQAYSRKVEARFLI 137 (206)
T ss_dssp TSSEEEEECCSSSSH---------HHHH----HHH--HCSEEEEEECSCTTT-H-HHHHHHHHHHTTSCGGGCCEEEEEE
T ss_pred CCCEEEEECCCCCCH---------HHHH----HHH--HCCEEEEEecCCHHH-H-HHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 468999999987522 1111 121 358899887665433 1 2233444444332112234568999
Q ss_pred EccCC
Q 005287 206 THSSS 210 (704)
Q Consensus 206 TK~D~ 210 (704)
|+++.
T Consensus 138 N~~~~ 142 (206)
T 4dzz_A 138 TRKIE 142 (206)
T ss_dssp CSBCT
T ss_pred eccCC
Confidence 99984
No 267
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.54 E-value=0.018 Score=58.54 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=20.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~ 102 (704)
.++|+|++|+|||||++.|+|-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 268
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.53 E-value=0.018 Score=58.24 Aligned_cols=24 Identities=25% Similarity=0.549 Sum_probs=21.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
.++|+|++|+|||||++.|+|-..
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999999653
No 269
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.53 E-value=0.013 Score=57.55 Aligned_cols=22 Identities=32% Similarity=0.685 Sum_probs=20.0
Q ss_pred EEEEeCCCCcHHHHHHHHhCCC
Q 005287 82 ILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 82 IlVVGkTGvGKSTLINsLlG~~ 103 (704)
|+|+|++|||||||++.|+.+.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999998654
No 270
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.49 E-value=0.019 Score=55.00 Aligned_cols=25 Identities=32% Similarity=0.636 Sum_probs=22.2
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~ 103 (704)
...|+|+|++|+||||+++.|.+.-
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4579999999999999999998764
No 271
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.49 E-value=0.018 Score=58.98 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=21.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~ 103 (704)
.++|+|++|+|||||++.|+|-.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68999999999999999999964
No 272
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.48 E-value=0.019 Score=59.10 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=20.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~ 102 (704)
.++|+|++|+|||||++.|+|-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 273
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.47 E-value=0.14 Score=56.70 Aligned_cols=72 Identities=14% Similarity=0.294 Sum_probs=45.7
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHH
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 158 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ 158 (704)
+--|++.|+||+|||+|..+|+++- +.++..++.+-+......+ .+..++.+-..
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~----------------------~~~fi~v~~s~l~sk~vGe---sek~ir~lF~~ 270 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQT----------------------SATFLRIVGSELIQKYLGD---GPRLCRQIFKV 270 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHH----------------------TCEEEEEESGGGCCSSSSH---HHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHHHh----------------------CCCEEEEEHHHhhhccCch---HHHHHHHHHHH
Confidence 4579999999999999999998642 3345556666665543321 12233332222
Q ss_pred HhcCCCCEEEEEEeccCc
Q 005287 159 IRRSPPDIVLYFERLDLI 176 (704)
Q Consensus 159 ik~~~~dvVL~Vi~ld~~ 176 (704)
.+. ...+|||++.+|..
T Consensus 271 Ar~-~aP~IIfiDEiDai 287 (437)
T 4b4t_I 271 AGE-NAPSIVFIDEIDAI 287 (437)
T ss_dssp HHH-TCSEEEEEEEESSS
T ss_pred HHh-cCCcEEEEehhhhh
Confidence 222 45689999988854
No 274
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.45 E-value=0.019 Score=59.21 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=21.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
.++|+|++|+|||||++.|+|-..
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Confidence 689999999999999999999653
No 275
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.45 E-value=0.019 Score=58.65 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
.++|+|++|+|||||++.|+|-..
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 589999999999999999999753
No 276
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.43 E-value=0.019 Score=59.25 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=21.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~ 103 (704)
.++|+|++|+|||||++.|+|-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999965
No 277
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.37 E-value=0.02 Score=58.71 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
.++|+|++|+|||||++.|+|-..
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 689999999999999999999753
No 278
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.33 E-value=0.02 Score=59.36 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=21.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
.++|+|++|+|||||++.|+|-..
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 689999999999999999999753
No 279
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.30 E-value=0.021 Score=58.65 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=21.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
.++|+|++|+|||||++.|+|-..
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 688999999999999999999753
No 280
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.29 E-value=0.021 Score=58.34 Aligned_cols=24 Identities=29% Similarity=0.576 Sum_probs=21.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
.++|+|++|+|||||++.|+|-..
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 588999999999999999999753
No 281
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.28 E-value=0.19 Score=54.99 Aligned_cols=72 Identities=13% Similarity=0.317 Sum_probs=45.0
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHH
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 158 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ 158 (704)
+--|++.|+||+|||+|..+|+++- +.++..++.+.+......+ .+..++.+-..
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~----------------------~~~f~~v~~s~l~sk~vGe---se~~vr~lF~~ 236 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHT----------------------DCKFIRVSGAELVQKYIGE---GSRMVRELFVM 236 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHH----------------------TCEEEEEEGGGGSCSSTTH---HHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhh----------------------CCCceEEEhHHhhccccch---HHHHHHHHHHH
Confidence 4469999999999999999998642 3345556666665543221 12222322222
Q ss_pred HhcCCCCEEEEEEeccCc
Q 005287 159 IRRSPPDIVLYFERLDLI 176 (704)
Q Consensus 159 ik~~~~dvVL~Vi~ld~~ 176 (704)
.+. ...+|+|++.+|..
T Consensus 237 Ar~-~aP~IIFiDEiDai 253 (405)
T 4b4t_J 237 ARE-HAPSIIFMDEIDSI 253 (405)
T ss_dssp HHH-TCSEEEEEESSSCC
T ss_pred HHH-hCCceEeeecchhh
Confidence 221 45789999988864
No 282
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.20 E-value=0.019 Score=54.80 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=19.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhC
Q 005287 81 RILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG 101 (704)
.|+|+|++|+||||+++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999986
No 283
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.19 E-value=0.016 Score=61.04 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=21.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~ 103 (704)
=.++|+|++|+|||||++.|+|-.
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CEEEEECCCCchHHHHHHHHHcCC
Confidence 378999999999999999999965
No 284
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.12 E-value=0.12 Score=56.97 Aligned_cols=71 Identities=14% Similarity=0.356 Sum_probs=44.3
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHH
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKF 158 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ 158 (704)
+--|++.|+||+|||+|+.+|+++- +.++..++.+.+....... ....++.+-..
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~----------------------~~~~~~v~~~~l~~~~~Ge---~e~~ir~lF~~ 260 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANST----------------------KAAFIRVNGSEFVHKYLGE---GPRMVRDVFRL 260 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHH----------------------TCEEEEEEGGGTCCSSCSH---HHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh----------------------CCCeEEEecchhhccccch---hHHHHHHHHHH
Confidence 3459999999999999999998632 3455666777666543321 12222222222
Q ss_pred HhcCCCCEEEEEEeccC
Q 005287 159 IRRSPPDIVLYFERLDL 175 (704)
Q Consensus 159 ik~~~~dvVL~Vi~ld~ 175 (704)
.+. ...+|+|++.+|.
T Consensus 261 A~~-~aP~IifiDEiD~ 276 (428)
T 4b4t_K 261 ARE-NAPSIIFIDEVDS 276 (428)
T ss_dssp HHH-TCSEEEEEECTHH
T ss_pred HHH-cCCCeeechhhhh
Confidence 221 4568899887764
No 285
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.09 E-value=0.02 Score=60.45 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.3
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
.=.++|+|++|+|||||++.|+|-
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhh
Confidence 347899999999999999999864
No 286
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.05 E-value=0.024 Score=60.82 Aligned_cols=24 Identities=29% Similarity=0.569 Sum_probs=21.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~ 103 (704)
-.|+|+|++|+|||||+|.|++.-
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 479999999999999999999864
No 287
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.03 E-value=0.027 Score=56.29 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=23.3
Q ss_pred CeEEEEEeCCCCcHHHHHHHHh---CCCCc
Q 005287 79 SIRILVLGKTGVGKSATINSIF---DQTKT 105 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLl---G~~~a 105 (704)
+..|+|+|++|+||||+++.|. |....
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 4689999999999999999999 86543
No 288
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.00 E-value=0.025 Score=54.89 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=21.6
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~ 103 (704)
...|+|+|++||||||+++.|....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4578999999999999999997643
No 289
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.99 E-value=0.022 Score=53.20 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
..|+|+|++|+||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999764
No 290
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.99 E-value=0.019 Score=56.20 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~ 103 (704)
.|+++|++|+|||||++.|+|..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 48899999999999999998854
No 291
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.99 E-value=0.017 Score=57.15 Aligned_cols=24 Identities=21% Similarity=0.501 Sum_probs=15.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHh-CCC
Q 005287 80 IRILVLGKTGVGKSATINSIF-DQT 103 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLl-G~~ 103 (704)
-.|+|+|++|+|||||++.|. +..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 468999999999999999999 764
No 292
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.95 E-value=0.025 Score=53.80 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=21.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~ 103 (704)
-.++++|+.|+|||||++.|+|..
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999999865
No 293
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.93 E-value=0.21 Score=55.58 Aligned_cols=108 Identities=16% Similarity=0.268 Sum_probs=59.9
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
.+--|++.|+||+|||+|..+|+++- +.++..++.+.+....... .+..++.+-.
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~----------------------~~~fi~vs~s~L~sk~vGe---sek~ir~lF~ 296 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRT----------------------DATFIRVIGSELVQKYVGE---GARMVRELFE 296 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHH----------------------TCEEEEEEGGGGCCCSSSH---HHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhcc----------------------CCCeEEEEhHHhhcccCCH---HHHHHHHHHH
Confidence 34579999999999999999998642 2345566666665543321 1222222222
Q ss_pred HHhcCCCCEEEEEEeccCccCCC------Cc----HHHHHHHHHHhcccccccEEEEE--EccCCC
Q 005287 158 FIRRSPPDIVLYFERLDLISMGF------SD----FPLLKLMTEVFGTAIWFNTILVM--THSSST 211 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~t~~~------~D----~~lLk~L~~~fG~~~~k~vIVVL--TK~D~l 211 (704)
..+. ...+|||++.+|...... .+ ..+...|...-|.....+++||. |+.|.+
T Consensus 297 ~Ar~-~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~L 361 (467)
T 4b4t_H 297 MART-KKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTL 361 (467)
T ss_dssp HHHH-TCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSB
T ss_pred HHHh-cCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccC
Confidence 2221 456899998887543111 01 12344445444444445565554 344544
No 294
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.92 E-value=0.028 Score=57.90 Aligned_cols=23 Identities=26% Similarity=0.595 Sum_probs=21.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~ 103 (704)
.++|+|++|+|||||++.|+|..
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999975
No 295
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.92 E-value=0.023 Score=55.19 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
=.++|+|++|+|||||++.|+|.
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999884
No 296
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.92 E-value=0.017 Score=57.33 Aligned_cols=22 Identities=27% Similarity=0.258 Sum_probs=20.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~ 102 (704)
.++|+|++|+|||||++.|+|.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999997
No 297
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.90 E-value=0.023 Score=61.13 Aligned_cols=23 Identities=43% Similarity=0.621 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
-.|+|+|++|+|||||+++|+|.
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 47999999999999999999874
No 298
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.83 E-value=0.052 Score=52.51 Aligned_cols=30 Identities=20% Similarity=0.221 Sum_probs=25.3
Q ss_pred CCCCCCeEEEEEeCCCCcHHHHHHHHhCCC
Q 005287 74 PDLDFSIRILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 74 ~~~~~~lrIlVVGkTGvGKSTLINsLlG~~ 103 (704)
........|+|+|.+|+||||+.+.|.+.-
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 444556789999999999999999999863
No 299
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.76 E-value=0.032 Score=58.33 Aligned_cols=24 Identities=29% Similarity=0.489 Sum_probs=21.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
.++|+|++|+|||||++.|+|-..
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 689999999999999999999653
No 300
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=93.76 E-value=0.31 Score=49.54 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=21.4
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
.-.|++.|+||+||||++++|.+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999999999863
No 301
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.71 E-value=0.025 Score=60.02 Aligned_cols=23 Identities=39% Similarity=0.635 Sum_probs=21.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~ 103 (704)
.++|+|++|+|||||+|.|+|.-
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999864
No 302
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.67 E-value=0.031 Score=54.06 Aligned_cols=24 Identities=25% Similarity=0.585 Sum_probs=21.1
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
.-.|+|+|++|+||||+++.|.+.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999753
No 303
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=93.67 E-value=0.23 Score=49.58 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=21.0
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
+-.|+++|+||+||||++.+|.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 346999999999999999999763
No 304
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.61 E-value=0.018 Score=55.54 Aligned_cols=22 Identities=18% Similarity=0.409 Sum_probs=20.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~ 102 (704)
.|+|+|++|+|||||++.|++.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999875
No 305
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.56 E-value=0.036 Score=58.43 Aligned_cols=27 Identities=30% Similarity=0.255 Sum_probs=23.8
Q ss_pred CCCCeEEEEEeCCCCcHHHHHHHHhCC
Q 005287 76 LDFSIRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 76 ~~~~lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
......|+|+|++|+|||||++.|.|.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 455678999999999999999999874
No 306
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.55 E-value=0.028 Score=60.58 Aligned_cols=24 Identities=54% Similarity=0.606 Sum_probs=21.6
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
.-.|+|+|++|+|||||++.|++.
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 457999999999999999999874
No 307
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.48 E-value=0.043 Score=51.12 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHhC
Q 005287 80 IRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG 101 (704)
..|+|+|.+|+||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5689999999999999999986
No 308
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.45 E-value=0.04 Score=50.54 Aligned_cols=20 Identities=35% Similarity=0.453 Sum_probs=18.6
Q ss_pred eEEEEEeCCCCcHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSI 99 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsL 99 (704)
..|+|+|.+||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 309
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.44 E-value=0.036 Score=59.80 Aligned_cols=24 Identities=17% Similarity=0.498 Sum_probs=21.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
.++|+|++|+|||||++.|.|-..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCchHHHHHHHHhcCCC
Confidence 578999999999999999999653
No 310
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.42 E-value=0.039 Score=55.30 Aligned_cols=25 Identities=32% Similarity=0.316 Sum_probs=21.9
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCC
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
....|+|+|++|+|||||++.|.|.
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999774
No 311
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.37 E-value=0.038 Score=54.38 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=19.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHh
Q 005287 80 IRILVLGKTGVGKSATINSIF 100 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLl 100 (704)
=.++|+|++|+|||||++.|+
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 468899999999999999988
No 312
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.35 E-value=0.03 Score=61.58 Aligned_cols=23 Identities=43% Similarity=0.508 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
-.|+|+|++|+|||||+|+|+|.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999874
No 313
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.35 E-value=0.036 Score=54.06 Aligned_cols=24 Identities=21% Similarity=0.356 Sum_probs=21.1
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
...|+|+|++|+||||+.+.|.+.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999753
No 314
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.35 E-value=0.041 Score=53.23 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=21.4
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
...|+|+|++|+||||+.+.|.+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999764
No 315
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.33 E-value=0.037 Score=59.87 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=21.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
.++|+|++|+|||||++.|.|-..
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEcCCCchHHHHHHHHhcCCC
Confidence 588999999999999999999654
No 316
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.31 E-value=0.048 Score=51.15 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=20.4
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhC
Q 005287 79 SIRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG 101 (704)
.-.|+|+|.+|+||||+.+.|.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999865
No 317
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.29 E-value=0.039 Score=59.47 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=21.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
.++|+|++|+|||||++.|+|-..
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 578999999999999999999753
No 318
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.28 E-value=0.035 Score=62.51 Aligned_cols=24 Identities=33% Similarity=0.547 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~ 103 (704)
..|+|+|+||+|||||+|+|+|.-
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 469999999999999999999854
No 319
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.27 E-value=0.045 Score=50.59 Aligned_cols=21 Identities=19% Similarity=0.128 Sum_probs=19.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhC
Q 005287 81 RILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG 101 (704)
.|+|+|.+||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999964
No 320
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.23 E-value=0.24 Score=49.92 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=21.8
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCC
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
....|++.|+||+|||++..+|...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4568999999999999999999763
No 321
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.15 E-value=0.036 Score=53.59 Aligned_cols=23 Identities=13% Similarity=0.263 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
..|+|+|++|+|||||+|.|++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 36889999999999999999874
No 322
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.14 E-value=0.033 Score=59.40 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=22.5
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~ 103 (704)
.-+++|+|++|+|||||++.|.|..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999864
No 323
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.13 E-value=0.041 Score=52.94 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHhC
Q 005287 80 IRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG 101 (704)
.+|+|+|.+|+||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999987
No 324
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.13 E-value=0.042 Score=59.24 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=21.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~ 103 (704)
.++|+|++|+|||||++.|+|-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 57899999999999999999965
No 325
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.11 E-value=0.033 Score=52.69 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=21.1
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
.-.++++|++|+|||||++.|++.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999999874
No 326
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.08 E-value=0.043 Score=59.23 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=21.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~ 103 (704)
.++|+|++|+|||||++.|+|-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 57899999999999999999965
No 327
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.07 E-value=0.053 Score=52.30 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHhC
Q 005287 80 IRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG 101 (704)
..|+|+|.+|+||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999987
No 328
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.07 E-value=0.043 Score=59.68 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=21.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
.++|+|++|+|||||++.|.|-..
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEcCCCchHHHHHHHHHcCCC
Confidence 578999999999999999999763
No 329
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.05 E-value=0.044 Score=59.33 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=21.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
.++|+|++|+|||||++.|+|-..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCcHHHHHHHHHHcCCC
Confidence 578999999999999999999753
No 330
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=93.03 E-value=0.16 Score=54.38 Aligned_cols=21 Identities=38% Similarity=0.563 Sum_probs=18.3
Q ss_pred CeEEEEEeCCCCcHHHHHHHHh
Q 005287 79 SIRILVLGKTGVGKSATINSIF 100 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLl 100 (704)
.+ .+|+|++|+||||++++|+
T Consensus 24 g~-~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 24 GI-TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EE-EEEECCTTSSHHHHHHHHH
T ss_pred Ce-EEEECCCCCCHHHHHHHHH
Confidence 35 5599999999999999986
No 331
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.98 E-value=0.064 Score=51.60 Aligned_cols=28 Identities=25% Similarity=0.434 Sum_probs=22.9
Q ss_pred CCCCCCeEEEEEeCCCCcHHHHHHHHhC
Q 005287 74 PDLDFSIRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 74 ~~~~~~lrIlVVGkTGvGKSTLINsLlG 101 (704)
.....++.|+|+|.+|+||||+.+.|..
T Consensus 15 ~~~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 15 VPRGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp -CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445568999999999999999999853
No 332
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.92 E-value=0.047 Score=59.16 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=21.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~ 103 (704)
.++|+|++|+|||||++.|+|-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 67899999999999999999975
No 333
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.89 E-value=0.051 Score=60.68 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
-+++++|.+|+|||||+|.|+..
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhh
Confidence 38999999999999999998754
No 334
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=92.79 E-value=0.15 Score=52.75 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=22.0
Q ss_pred CCCCeEEEEEeCCCCcHHHHHHHHhC
Q 005287 76 LDFSIRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 76 ~~~~lrIlVVGkTGvGKSTLINsLlG 101 (704)
...+.-|++.|+||+|||+|..+|+.
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34566788899999999999999975
No 335
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=92.77 E-value=0.43 Score=49.94 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.3
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
+-.|++.|+||+|||+|..+|..+
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 457999999999999999999864
No 336
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.74 E-value=0.072 Score=50.32 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=20.9
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhC
Q 005287 78 FSIRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG 101 (704)
.+..|+|+|.+|+||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999853
No 337
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.70 E-value=0.039 Score=59.20 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=21.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~ 103 (704)
.++|+|++|+|||||++.|+|-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 58899999999999999999965
No 338
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.69 E-value=0.062 Score=56.08 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=22.9
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCC
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
.....|+|+|++|+|||||++.|.|.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999874
No 339
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.66 E-value=0.055 Score=58.97 Aligned_cols=23 Identities=35% Similarity=0.616 Sum_probs=21.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~ 103 (704)
.++|+|++|+|||||++.|+|-.
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 68999999999999999999964
No 340
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.64 E-value=0.062 Score=52.15 Aligned_cols=22 Identities=27% Similarity=0.656 Sum_probs=19.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHhC
Q 005287 80 IRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG 101 (704)
++|+|.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999953
No 341
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.61 E-value=0.066 Score=50.32 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.3
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhC
Q 005287 79 SIRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG 101 (704)
...|+|.|.+||||||+.+.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999954
No 342
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=92.57 E-value=0.069 Score=51.82 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=21.7
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhC
Q 005287 78 FSIRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG 101 (704)
....|+|+|++|+||||+++.|.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999976
No 343
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=92.53 E-value=0.069 Score=49.96 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
..|+|+|.+||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999753
No 344
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.46 E-value=0.068 Score=50.80 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=19.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhC
Q 005287 81 RILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG 101 (704)
.|+|+|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999965
No 345
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.44 E-value=0.071 Score=50.27 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=20.1
Q ss_pred CeEEEEEeCCCCcHHHHHHHHh
Q 005287 79 SIRILVLGKTGVGKSATINSIF 100 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLl 100 (704)
...|+|+|.+|+||||+.+.|.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999996
No 346
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=92.43 E-value=0.49 Score=52.80 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
-.|+++|+||+|||+|+++|.++
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 34999999999999999999874
No 347
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.43 E-value=0.29 Score=54.11 Aligned_cols=73 Identities=16% Similarity=0.296 Sum_probs=45.0
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
.+--|++.|+||+|||+|..+|+++- +.++..++.+.+....... ....++.+-.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~----------------------~~~f~~v~~s~l~~~~vGe---se~~ir~lF~ 268 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQT----------------------NATFLKLAAPQLVQMYIGE---GAKLVRDAFA 268 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH----------------------TCEEEEEEGGGGCSSCSSH---HHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHh----------------------CCCEEEEehhhhhhcccch---HHHHHHHHHH
Confidence 35579999999999999999998642 3345556666665543321 1222222222
Q ss_pred HHhcCCCCEEEEEEeccCc
Q 005287 158 FIRRSPPDIVLYFERLDLI 176 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~ 176 (704)
..+. ...+|||++.+|..
T Consensus 269 ~A~~-~aP~IifiDEiDal 286 (434)
T 4b4t_M 269 LAKE-KAPTIIFIDELDAI 286 (434)
T ss_dssp HHHH-HCSEEEEEECTHHH
T ss_pred HHHh-cCCeEEeecchhhh
Confidence 1211 34689999888753
No 348
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.38 E-value=0.073 Score=50.03 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=19.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhC
Q 005287 81 RILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG 101 (704)
.|+|.|.+||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999964
No 349
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.38 E-value=0.037 Score=59.42 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=21.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~ 103 (704)
.++|+|++|+|||||++.|+|-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999999965
No 350
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.36 E-value=0.07 Score=51.83 Aligned_cols=22 Identities=23% Similarity=0.563 Sum_probs=19.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHhC
Q 005287 80 IRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG 101 (704)
++|+|+|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999954
No 351
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.32 E-value=0.066 Score=51.56 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=20.4
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhC
Q 005287 79 SIRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG 101 (704)
...|+|+|.+|+||||+.+.|.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999964
No 352
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.22 E-value=0.074 Score=51.34 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHhC
Q 005287 80 IRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG 101 (704)
-.|+|+|.+|+||||+...|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999974
No 353
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.22 E-value=0.085 Score=53.32 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=20.6
Q ss_pred CeEEEEEeCCCCcHHHHHHHHh
Q 005287 79 SIRILVLGKTGVGKSATINSIF 100 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLl 100 (704)
...|+|+|++|+||||+++.|.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999998
No 354
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.03 E-value=0.081 Score=56.18 Aligned_cols=27 Identities=26% Similarity=0.223 Sum_probs=23.3
Q ss_pred CCCCeEEEEEeCCCCcHHHHHHHHhCC
Q 005287 76 LDFSIRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 76 ~~~~lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
...++-|+|+|++|+|||||++.|.+.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 456789999999999999999998653
No 355
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=91.93 E-value=0.065 Score=51.77 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=19.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHhC
Q 005287 80 IRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG 101 (704)
-.++|+|++|+|||||++.|++
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3578999999999999999984
No 356
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=91.92 E-value=0.046 Score=51.11 Aligned_cols=25 Identities=32% Similarity=0.431 Sum_probs=21.5
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~ 103 (704)
.-.++++|++|+|||||++.|.+.-
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3468899999999999999998743
No 357
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=91.88 E-value=0.088 Score=49.66 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=19.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHh
Q 005287 80 IRILVLGKTGVGKSATINSIF 100 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLl 100 (704)
..|+++|.+|+||||+.+.|.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999995
No 358
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=91.86 E-value=0.065 Score=53.54 Aligned_cols=22 Identities=27% Similarity=0.603 Sum_probs=20.3
Q ss_pred EEEEeCCCCcHHHHHHHHhCCC
Q 005287 82 ILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 82 IlVVGkTGvGKSTLINsLlG~~ 103 (704)
|+|+|++|+|||||+++|.+..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 9999999999999999998753
No 359
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=91.85 E-value=0.096 Score=49.26 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=20.0
Q ss_pred CeEEEEEeCCCCcHHHHHHHHh
Q 005287 79 SIRILVLGKTGVGKSATINSIF 100 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLl 100 (704)
+..|+|.|.+|+||||+.+.|.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999885
No 360
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=91.83 E-value=0.11 Score=49.47 Aligned_cols=25 Identities=32% Similarity=0.510 Sum_probs=21.7
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCC
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
...+|+|+|.+|+||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999754
No 361
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.76 E-value=0.088 Score=49.63 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=18.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhC
Q 005287 81 RILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG 101 (704)
-.+|+|++|+||||++.+|.+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999853
No 362
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.76 E-value=0.1 Score=49.85 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.6
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhC
Q 005287 79 SIRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG 101 (704)
+..|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999964
No 363
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.73 E-value=0.078 Score=52.61 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=23.0
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCC
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
.....|+|+|.+|+||||+++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34578999999999999999999885
No 364
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=91.72 E-value=0.091 Score=54.76 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=22.7
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhCC
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
..+..|+|+|++|+|||||.+.|.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35688999999999999999999763
No 365
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.69 E-value=0.11 Score=49.66 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=21.5
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
+..|+|.|.+|+||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999754
No 366
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=91.58 E-value=0.12 Score=49.18 Aligned_cols=25 Identities=28% Similarity=0.302 Sum_probs=22.3
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCC
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
....|+|+|.+|+||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4578999999999999999999864
No 367
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=91.57 E-value=0.087 Score=59.89 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=21.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~ 103 (704)
.++++|++|+|||||++.|+|-.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 78999999999999999999965
No 368
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.56 E-value=0.089 Score=59.53 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=23.3
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
..=.++|+|++|+|||||++.|.|...
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~~ 72 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQLI 72 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345789999999999999999999653
No 369
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=91.55 E-value=0.072 Score=54.80 Aligned_cols=21 Identities=24% Similarity=0.556 Sum_probs=20.0
Q ss_pred EEEEeCCCCcHHHHHHHHhCC
Q 005287 82 ILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 82 IlVVGkTGvGKSTLINsLlG~ 102 (704)
|+++|++|+|||||+++|.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999874
No 370
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.51 E-value=0.1 Score=50.82 Aligned_cols=22 Identities=32% Similarity=0.593 Sum_probs=19.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHhC
Q 005287 80 IRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG 101 (704)
++|+|.|.+|+||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999853
No 371
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=91.50 E-value=0.12 Score=48.90 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.4
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhC
Q 005287 79 SIRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG 101 (704)
...|+|+|.+|+||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999853
No 372
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.48 E-value=0.12 Score=49.64 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=21.2
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhC
Q 005287 78 FSIRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG 101 (704)
.+..|+|.|.+||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999964
No 373
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.44 E-value=0.06 Score=56.51 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~ 103 (704)
.++|+|.+|+|||||+|.|++..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 46799999999999999999753
No 374
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.42 E-value=0.1 Score=51.08 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=20.4
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhC
Q 005287 79 SIRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG 101 (704)
...|+|+|.+|+||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999853
No 375
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.34 E-value=0.11 Score=50.63 Aligned_cols=23 Identities=30% Similarity=0.660 Sum_probs=20.7
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhC
Q 005287 79 SIRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG 101 (704)
...|+|+|.+|+||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999864
No 376
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.33 E-value=0.12 Score=49.57 Aligned_cols=24 Identities=21% Similarity=0.176 Sum_probs=21.2
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhC
Q 005287 78 FSIRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG 101 (704)
.+..|+|.|.+|+||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999999964
No 377
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=91.29 E-value=0.093 Score=59.67 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=21.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~ 103 (704)
.++++|++|+|||||++.|+|-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999999965
No 378
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=91.28 E-value=0.18 Score=54.08 Aligned_cols=85 Identities=13% Similarity=0.088 Sum_probs=52.4
Q ss_pred cceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccC-------CCCcHHHH
Q 005287 114 TDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISM-------GFSDFPLL 186 (704)
Q Consensus 114 T~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~-------~~~D~~lL 186 (704)
|..+......+++..+.++||+|-.... ..+ ..+. ..+++|+||++++.... ...-...+
T Consensus 180 T~Gi~~~~~~~~~~~l~iwDt~GQe~~r--------~~w---~~yf--~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~ 246 (353)
T 1cip_A 180 TTGIVETHFTFKDLHFKMFDVGGQRSER--------KKW---IHCF--EGVTAIIFCVALSDYDLVLAEDEEMNRMHESM 246 (353)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGG--------GGG---GGGC--TTCSEEEEEEEGGGGGCEETTEEEEEHHHHHH
T ss_pred eeceEEEEEeeCCeeEEEEeCCCchhhh--------HHH---HHHH--hcCCEEEEEEECccccccccccchhhhHHHHH
Confidence 4445555667788999999999974321 111 1123 27899999998876421 00112344
Q ss_pred HHHHHHhccc--ccccEEEEEEccCCC
Q 005287 187 KLMTEVFGTA--IWFNTILVMTHSSST 211 (704)
Q Consensus 187 k~L~~~fG~~--~~k~vIVVLTK~D~l 211 (704)
.++....... ...|+|+|+||.|+.
T Consensus 247 ~~~~~i~~~~~~~~~piiLv~NK~DL~ 273 (353)
T 1cip_A 247 KLFDSICNNKWFTDTSIILFLNKKDLF 273 (353)
T ss_dssp HHHHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred HHHHHHHcCccccCCcEEEEEECcCch
Confidence 4555544321 247999999999975
No 379
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.28 E-value=0.072 Score=59.22 Aligned_cols=24 Identities=17% Similarity=0.423 Sum_probs=21.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~ 103 (704)
-.++|+|++|+|||||++.|+|-.
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCcc
Confidence 468999999999999999999865
No 380
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.27 E-value=0.083 Score=54.16 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
=-++|+|++|+|||||++.|++.
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 35889999999999999999764
No 381
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=91.24 E-value=0.11 Score=47.79 Aligned_cols=24 Identities=25% Similarity=0.552 Sum_probs=20.7
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
.-.|+|.|++|+|||++++.++..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999998753
No 382
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.22 E-value=0.12 Score=50.90 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=20.7
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhC
Q 005287 79 SIRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG 101 (704)
...|+|+|.+||||||+.+.|..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999963
No 383
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=91.20 E-value=0.35 Score=51.38 Aligned_cols=85 Identities=12% Similarity=0.063 Sum_probs=52.6
Q ss_pred cceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccC-------CCCcHHHH
Q 005287 114 TDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISM-------GFSDFPLL 186 (704)
Q Consensus 114 T~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~-------~~~D~~lL 186 (704)
|..+.......++.++.++||+|-... ...+ ..|. ..+++++||.+++.+.. ...-...+
T Consensus 154 TiGi~~~~~~~~~v~l~iwDtgGQe~~--------R~~w---~~yf--~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~ 220 (327)
T 3ohm_A 154 TTGIIEYPFDLQSVIFRMVDVGGQRSE--------RRKW---IHCF--ENVTSIMFLVALSEYDQVLVESDNENRMEESK 220 (327)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSHHH--------HTTG---GGGC--SSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHH
T ss_pred eeeEEEEEEEeeceeeEEEEcCCchhH--------HHHH---HHHh--CCCCEEEEEEECccccccccccccHhHHHHHH
Confidence 455666777788999999999997321 1111 1233 27899999997763221 11112344
Q ss_pred HHHHHHhccc--ccccEEEEEEccCCC
Q 005287 187 KLMTEVFGTA--IWFNTILVMTHSSST 211 (704)
Q Consensus 187 k~L~~~fG~~--~~k~vIVVLTK~D~l 211 (704)
..+.+..... ...|+|+++||.|+.
T Consensus 221 ~~~~~i~~~~~~~~~~iiL~~NK~DL~ 247 (327)
T 3ohm_A 221 ALFRTIITYPWFQNSSVILFLNKKDLL 247 (327)
T ss_dssp HHHHHHHTSGGGTTCEEEEEEECHHHH
T ss_pred HHHHHHhhhhccCCceEEEEEECchhh
Confidence 5555554332 247899999999976
No 384
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=91.12 E-value=0.32 Score=50.62 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=21.0
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
.-.++|.|++|+||||+++.+...
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999753
No 385
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.09 E-value=0.06 Score=51.88 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=19.6
Q ss_pred EEEEEeCCCCcHHHHHHHHhCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~ 102 (704)
.|+|+|.+|+||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999753
No 386
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=91.07 E-value=0.23 Score=53.46 Aligned_cols=84 Identities=11% Similarity=0.090 Sum_probs=48.5
Q ss_pred ceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCC-------CCcHHHHH
Q 005287 115 DCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMG-------FSDFPLLK 187 (704)
Q Consensus 115 ~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~-------~~D~~lLk 187 (704)
..+.......++..+.++||+|-.... ..+ ..++ ..+++++||++++.+... ..-...+.
T Consensus 189 ~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r--------~~w---~~~f--~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~ 255 (362)
T 1zcb_A 189 KGIHEYDFEIKNVPFKMVDVGGQRSER--------KRW---FECF--DSVTSILFLVSSSEFDQVLMEDRQTNRLTESLN 255 (362)
T ss_dssp SSEEEEEEEETTEEEEEEEECC---------------C---TTSC--TTCCEEEEEEETTCTTCEETTEEEEEHHHHHHH
T ss_pred cceEEEEeeeCCeEEEEEeccchhhhh--------hhH---HHHh--CCCCEEEEEEECccccccccccccccHHHHHHH
Confidence 344455566788999999999984321 111 1122 267999999988763210 01123344
Q ss_pred HHHHHhccc--ccccEEEEEEccCCC
Q 005287 188 LMTEVFGTA--IWFNTILVMTHSSST 211 (704)
Q Consensus 188 ~L~~~fG~~--~~k~vIVVLTK~D~l 211 (704)
.+....... ...|+|+|+||.|+.
T Consensus 256 ~~~~i~~~~~~~~~piILv~NK~DL~ 281 (362)
T 1zcb_A 256 IFETIVNNRVFSNVSIILFLNKTDLL 281 (362)
T ss_dssp HHHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred HHHHHhcchhhCCCCEEEEEEChhhh
Confidence 444443321 247999999999986
No 387
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=91.03 E-value=0.12 Score=53.54 Aligned_cols=25 Identities=28% Similarity=0.530 Sum_probs=22.0
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhC
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG 101 (704)
..+..|+|+|+|||||||+.+.|..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999974
No 388
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.01 E-value=0.14 Score=54.43 Aligned_cols=86 Identities=16% Similarity=0.164 Sum_probs=49.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCcc--------c-cCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHH
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTE--------T-DAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRK 150 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~--------v-s~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~ 150 (704)
.-|+|+|+||||||||...|+..-... + ....-+|..+.. .+..|.+-.+||.-.+.+.-... .....
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~--~E~~gvphhlid~~~~~e~~s~~-~F~~~ 80 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITA--EEMDGVPHHLIDIKDPSESFSVA-DFQDL 80 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCH--HHHTTCCEESSSCBCTTSCCCHH-HHHHH
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCH--HHHcCCCEEEeccCChhhhccHH-HHHHH
Confidence 458899999999999999997543221 1 122334443332 24578888899988876653222 22223
Q ss_pred HHHHHHHHHhcCCCCEEEEE
Q 005287 151 IMLSVKKFIRRSPPDIVLYF 170 (704)
Q Consensus 151 il~~Ik~~ik~~~~dvVL~V 170 (704)
....+...... -.++|+|
T Consensus 81 a~~~i~~i~~~--gk~pIlV 98 (322)
T 3exa_A 81 ATPLITEIHER--GRLPFLV 98 (322)
T ss_dssp HHHHHHHHHHT--TCEEEEE
T ss_pred HHHHHHHHHhC--CCcEEEE
Confidence 33344443332 2455665
No 389
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=91.00 E-value=0.16 Score=48.20 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=21.7
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCC
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
....|+|+|.+|+||||+++.|...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999753
No 390
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=90.98 E-value=0.14 Score=51.50 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=21.5
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhC
Q 005287 78 FSIRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG 101 (704)
.+++|+|.|.+||||||+...|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999963
No 391
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=90.87 E-value=0.13 Score=47.70 Aligned_cols=21 Identities=29% Similarity=0.313 Sum_probs=19.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhC
Q 005287 81 RILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG 101 (704)
+|+|.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999853
No 392
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=90.85 E-value=0.14 Score=48.17 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=19.9
Q ss_pred CeEEEEEeCCCCcHHHHHHHHh
Q 005287 79 SIRILVLGKTGVGKSATINSIF 100 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLl 100 (704)
...|+|+|.+|+||||+.+.|.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 4579999999999999999996
No 393
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=90.82 E-value=0.094 Score=53.31 Aligned_cols=22 Identities=27% Similarity=0.603 Sum_probs=20.3
Q ss_pred EEEEeCCCCcHHHHHHHHhCCC
Q 005287 82 ILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 82 IlVVGkTGvGKSTLINsLlG~~ 103 (704)
|+|+|++|+|||||+++|.+..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCcChHHHHHHHHHHHc
Confidence 9999999999999999998753
No 394
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=90.78 E-value=0.1 Score=55.80 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=22.5
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~ 103 (704)
.=+++|+|++|+|||||++.|+|..
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3489999999999999999999864
No 395
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=90.76 E-value=0.14 Score=48.47 Aligned_cols=23 Identities=22% Similarity=0.508 Sum_probs=20.3
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhC
Q 005287 79 SIRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG 101 (704)
...|+|.|.+|+||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999854
No 396
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=90.74 E-value=0.94 Score=48.39 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=21.2
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
.-.|+|.|++|+|||+++.+|..+
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999653
No 397
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=90.74 E-value=0.13 Score=48.57 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=20.7
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhC
Q 005287 79 SIRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG 101 (704)
...|+|+|.+|+||||+.+.|.+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999975
No 398
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=90.62 E-value=0.15 Score=58.60 Aligned_cols=27 Identities=22% Similarity=0.443 Sum_probs=23.4
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCc
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKT 105 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a 105 (704)
.=.++|+|++|+|||||+|.|.|....
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~Gll~P 129 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAGKQKP 129 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCEEEEECCCCChHHHHHHHHhcCCCC
Confidence 347899999999999999999997544
No 399
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=90.62 E-value=0.18 Score=48.37 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.0
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhC
Q 005287 78 FSIRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG 101 (704)
....|+|.|.+|+||||+.+.|..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999964
No 400
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=90.60 E-value=0.14 Score=48.43 Aligned_cols=21 Identities=33% Similarity=0.374 Sum_probs=19.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhC
Q 005287 81 RILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG 101 (704)
.|+|.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999964
No 401
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=90.60 E-value=0.17 Score=57.24 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=22.7
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
.=.++|+|++|+|||||++.|+|...
T Consensus 25 Gei~gLiGpNGaGKSTLlkiL~Gl~~ 50 (538)
T 3ozx_A 25 NTILGVLGKNGVGKTTVLKILAGEII 50 (538)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 34689999999999999999999653
No 402
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=90.59 E-value=0.09 Score=60.07 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=21.6
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~ 103 (704)
.++++|++|+|||||++.|+|..
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 79999999999999999999965
No 403
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=90.58 E-value=0.086 Score=60.11 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=21.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~ 103 (704)
.++|+|++|+|||||++.|+|-.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 68999999999999999999965
No 404
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.58 E-value=0.16 Score=49.49 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=20.9
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhC
Q 005287 79 SIRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG 101 (704)
++.|+|.|.+|+||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999964
No 405
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=90.52 E-value=0.11 Score=50.04 Aligned_cols=23 Identities=17% Similarity=0.050 Sum_probs=20.7
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhC
Q 005287 79 SIRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG 101 (704)
.-.++|+|++|+|||||++.|++
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999987
No 406
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=90.51 E-value=0.12 Score=59.31 Aligned_cols=27 Identities=19% Similarity=0.342 Sum_probs=23.3
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
..=.++|+|++|+|||||++.|.|...
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 344789999999999999999999653
No 407
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=90.49 E-value=0.15 Score=48.03 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=19.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhC
Q 005287 81 RILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG 101 (704)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999964
No 408
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=90.48 E-value=0.081 Score=60.14 Aligned_cols=23 Identities=35% Similarity=0.378 Sum_probs=21.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~ 103 (704)
.++++|++|+|||||++.|+|..
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 78999999999999999999865
No 409
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=90.45 E-value=0.13 Score=52.13 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=19.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhC
Q 005287 81 RILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG 101 (704)
.|+|+|+||+||||+.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999964
No 410
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=90.39 E-value=0.095 Score=59.77 Aligned_cols=24 Identities=42% Similarity=0.511 Sum_probs=21.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
.++++|++|+|||||++.|+|...
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCcc
Confidence 789999999999999999998653
No 411
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=90.39 E-value=0.12 Score=48.42 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=19.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhC
Q 005287 81 RILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG 101 (704)
+|+|+|.+|+||||+...|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 412
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=90.35 E-value=0.21 Score=46.82 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.2
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhC
Q 005287 79 SIRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG 101 (704)
...|+|.|.+|+||||+.+.|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999853
No 413
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.29 E-value=0.15 Score=50.30 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=19.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHhC
Q 005287 80 IRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG 101 (704)
+.|+|.|.+|+||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999853
No 414
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=90.25 E-value=0.11 Score=58.26 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~ 103 (704)
-.++|+|++|+|||||++.|.|-.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 357899999999999999998753
No 415
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=90.12 E-value=0.12 Score=54.48 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=20.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~ 102 (704)
.++++|++|+|||||++.|++.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999999874
No 416
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=89.99 E-value=0.15 Score=51.37 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=22.9
Q ss_pred CCCCeEEEEEeCCCCcHHHHHHHHhCC
Q 005287 76 LDFSIRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 76 ~~~~lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
...+..|+++|.||+||||+.+.|...
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 345678999999999999999999653
No 417
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=89.95 E-value=0.13 Score=50.36 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=21.2
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
.-.++|+|++|+|||||+..|++.
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 346899999999999999999874
No 418
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=89.87 E-value=0.13 Score=56.67 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=22.4
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~ 103 (704)
.=+++|+|++|+|||||++.|+|..
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc
Confidence 3489999999999999999999864
No 419
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=89.76 E-value=0.5 Score=49.20 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=21.3
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
.-.|++.|+||+|||++..+|..+
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 467999999999999999999753
No 420
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=89.74 E-value=0.18 Score=57.11 Aligned_cols=26 Identities=23% Similarity=0.455 Sum_probs=22.6
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCcc
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTE 106 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~ 106 (704)
.++|+|++|+|||||++.|+|.....
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~~p~ 321 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEITAD 321 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 57899999999999999999975443
No 421
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.71 E-value=0.2 Score=49.54 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=21.1
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhC
Q 005287 78 FSIRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG 101 (704)
...+|+|+|.+|+||||+.+.|..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999964
No 422
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=89.67 E-value=0.21 Score=56.47 Aligned_cols=27 Identities=19% Similarity=0.384 Sum_probs=23.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCccc
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTET 107 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~v 107 (704)
.++|+|++|+|||||++.|+|......
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~~p~~ 340 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVEEPTE 340 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSB
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 678999999999999999999764433
No 423
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=89.67 E-value=0.38 Score=56.76 Aligned_cols=23 Identities=22% Similarity=0.223 Sum_probs=20.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~ 103 (704)
.++|+|++|+|||||++.|.|-.
T Consensus 578 i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 578 LVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHhhh
Confidence 68899999999999999998743
No 424
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=89.55 E-value=0.18 Score=49.42 Aligned_cols=110 Identities=15% Similarity=0.057 Sum_probs=57.3
Q ss_pred EEEEE-eCCCCcHHHHHHHHh------CCCCcccc-CCCCc-cceE-------EEEEe-----eEcCeEEEEEECCCC-C
Q 005287 81 RILVL-GKTGVGKSATINSIF------DQTKTETD-AFQPA-TDCI-------REVKG-----SVNGIKVTFIDTPGF-L 138 (704)
Q Consensus 81 rIlVV-GkTGvGKSTLINsLl------G~~~a~vs-~~~~t-T~~~-------~~~~~-----~~~G~~v~LIDTPGl-~ 138 (704)
.|+|+ ++.|+||||+.-.|. | ++..++ +..+. +.-. ..... ......++|||||+. .
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~~~~~~~~~l~~~vi~~~~l~~l~~~yD~viiD~p~~~~ 80 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSATGWGKRGSLPFKVVDERQAAKYAPKYQNIVIDTQARPE 80 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHHHHHHHHSCCSSEEEEGGGHHHHGGGCSEEEEEEECCCS
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCHHHHhcCCCCCcceeCHHHHHHhhhcCCEEEEeCCCCcC
Confidence 35554 689999999876663 4 333332 11111 1100 00000 013467999999997 4
Q ss_pred CcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCCCCcHHHHHHHHHHhcccccccEEEEEEccCCC
Q 005287 139 PSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMGFSDFPLLKLMTEVFGTAIWFNTILVMTHSSST 211 (704)
Q Consensus 139 d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~~~D~~lLk~L~~~fG~~~~k~vIVVLTK~D~l 211 (704)
... .. ..+. .+|.+++++..+..... .-..+++.+.+.. ..+..+|+|+.+.-
T Consensus 81 ~~~---------~~----~~l~--~aD~viiv~~~~~~~~~-~~~~~~~~l~~~~----~~~~~vv~N~~~~~ 133 (209)
T 3cwq_A 81 DED---------LE----ALAD--GCDLLVIPSTPDALALD-ALMLTIETLQKLG----NNRFRILLTIIPPY 133 (209)
T ss_dssp SSH---------HH----HHHH--TSSEEEEEECSSHHHHH-HHHHHHHHHHHTC----SSSEEEEECSBCCT
T ss_pred cHH---------HH----HHHH--HCCEEEEEecCCchhHH-HHHHHHHHHHhcc----CCCEEEEEEecCCc
Confidence 321 11 1222 46899988766543320 1123344444321 34578999999843
No 425
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=89.54 E-value=0.19 Score=49.11 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=20.3
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhC
Q 005287 79 SIRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG 101 (704)
.+.|+|+|.+|+||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999853
No 426
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=89.48 E-value=0.18 Score=46.74 Aligned_cols=21 Identities=19% Similarity=0.392 Sum_probs=18.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhC
Q 005287 81 RILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG 101 (704)
.|+|.|.+|+||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999853
No 427
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=89.38 E-value=0.1 Score=65.06 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=21.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~ 103 (704)
+|+|||+||+|||||++.|++--
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCc
Confidence 79999999999999999999853
No 428
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=89.33 E-value=0.14 Score=47.91 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=16.4
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhC
Q 005287 79 SIRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG 101 (704)
...|+|.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999863
No 429
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=89.24 E-value=0.22 Score=50.38 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.5
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhC
Q 005287 79 SIRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG 101 (704)
...|+|+|.+||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999964
No 430
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=89.19 E-value=0.24 Score=56.97 Aligned_cols=27 Identities=19% Similarity=0.384 Sum_probs=23.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCCccc
Q 005287 81 RILVLGKTGVGKSATINSIFDQTKTET 107 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~a~v 107 (704)
.++|+|++|+|||||++.|+|......
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~p~~ 410 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEEPTE 410 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSB
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCc
Confidence 578999999999999999999754433
No 431
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=89.13 E-value=0.16 Score=46.92 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=20.5
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
.-.|+|.|++|+|||+++..+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999988653
No 432
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=89.06 E-value=0.22 Score=49.31 Aligned_cols=22 Identities=23% Similarity=0.504 Sum_probs=19.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHhC
Q 005287 80 IRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG 101 (704)
++|+|+|+|||||+|....|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999988864
No 433
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=89.04 E-value=0.22 Score=48.08 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
..|+|+|.+|+|||||++.|+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999753
No 434
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=88.93 E-value=0.2 Score=46.78 Aligned_cols=20 Identities=35% Similarity=0.713 Sum_probs=17.5
Q ss_pred EEEEEeCCCCcHHHHHHHHh
Q 005287 81 RILVLGKTGVGKSATINSIF 100 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLl 100 (704)
-.+|+|++|+||||++.+|.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 34799999999999999984
No 435
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=88.92 E-value=0.28 Score=53.80 Aligned_cols=59 Identities=20% Similarity=0.228 Sum_probs=38.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCC---CCcccc------CCCCccceEEEEEeeEcCeEEEEEECCCCCCc
Q 005287 80 IRILVLGKTGVGKSATINSIFDQ---TKTETD------AFQPATDCIREVKGSVNGIKVTFIDTPGFLPS 140 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~---~~a~vs------~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~ 140 (704)
.-|+|+|+||||||||...|+.. .....+ ...-+|..+. ..+..|.+..+||.-.+.+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~--~~E~~gv~hhlid~~~~~~~ 70 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHP--LQEREGIPHHVMNHVDWSEE 70 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCC--GGGTTTCCEESCSCBCTTSC
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCC--HHHHcCchhhcCCccChHhH
Confidence 45889999999999999999643 211111 1223444332 22456888889988877654
No 436
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=88.87 E-value=1.3 Score=52.52 Aligned_cols=73 Identities=18% Similarity=0.339 Sum_probs=44.3
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCCCCccccCCCCccceEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHH
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQTKTETDAFQPATDCIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKK 157 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~~~a~vs~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~ 157 (704)
.+--|++.|+||+|||+|..+|.++- |.++..|+.+-+...... .....+...+..
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~el----------------------g~~~~~v~~~~l~sk~~g--ese~~lr~lF~~ 292 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANET----------------------GAFFFLINGPEIMSKLAG--ESESNLRKAFEE 292 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTT----------------------TCEEEEEEHHHHHSSCTT--HHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh----------------------CCeEEEEEhHHhhcccch--HHHHHHHHHHHH
Confidence 45679999999999999999999754 223445555544333221 111222222222
Q ss_pred HHhcCCCCEEEEEEeccCc
Q 005287 158 FIRRSPPDIVLYFERLDLI 176 (704)
Q Consensus 158 ~ik~~~~dvVL~Vi~ld~~ 176 (704)
+. ....+|||++.+|..
T Consensus 293 A~--~~~PsIIfIDEiDal 309 (806)
T 3cf2_A 293 AE--KNAPAIIFIDELDAI 309 (806)
T ss_dssp HT--TSCSEEEEEESGGGT
T ss_pred HH--HcCCeEEEEehhccc
Confidence 22 245688999988864
No 437
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=88.86 E-value=0.23 Score=48.01 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.6
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhC
Q 005287 79 SIRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG 101 (704)
.-.|+|.|++|+||||++..|..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999975
No 438
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=88.85 E-value=0.22 Score=46.98 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=18.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhC
Q 005287 81 RILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG 101 (704)
.|+|+|.+|+||||+...|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998853
No 439
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=88.80 E-value=0.27 Score=47.73 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.0
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
...|+|+|.+|+||||+.+.|.+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999998653
No 440
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=88.80 E-value=1.7 Score=52.52 Aligned_cols=19 Identities=26% Similarity=0.239 Sum_probs=17.9
Q ss_pred EEEEEeCCCCcHHHHHHHH
Q 005287 81 RILVLGKTGVGKSATINSI 99 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsL 99 (704)
.++|+|++|+||||+++.|
T Consensus 664 i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 664 FHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5889999999999999999
No 441
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=88.73 E-value=0.24 Score=50.22 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=21.0
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhC
Q 005287 78 FSIRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG 101 (704)
.++.|+|.|++|+||||+.+.|..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999963
No 442
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=88.63 E-value=1.1 Score=49.17 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.3
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
.-.|+|.|+||+|||+|..+|...
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999864
No 443
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=88.63 E-value=0.21 Score=53.05 Aligned_cols=60 Identities=15% Similarity=0.117 Sum_probs=37.8
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCCCccc---------cCCCCccceEEEEEeeEcCeEEEEEECCCCCCc
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQTKTET---------DAFQPATDCIREVKGSVNGIKVTFIDTPGFLPS 140 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~~a~v---------s~~~~tT~~~~~~~~~~~G~~v~LIDTPGl~d~ 140 (704)
+.-|+|+|+||||||||...|...-...+ ....-+|..+.. .+..|.+..+||.--+.+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~~~igTakp~~--~E~~~v~hhlid~~~~~e~ 78 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNA--EELLAAPHRLLDIRDPSQA 78 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTTCCTTTTCCCH--HHHHHSCEETSSCBCTTSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccccccccccCCCCCH--HHHcCCCEEEeccCCcccc
Confidence 35688999999999999999975432211 112234444332 1345667778887777654
No 444
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=88.56 E-value=0.25 Score=45.92 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHhC
Q 005287 80 IRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG 101 (704)
-+|+|.|.+|+||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998853
No 445
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=88.55 E-value=0.16 Score=51.75 Aligned_cols=22 Identities=18% Similarity=0.304 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHhC
Q 005287 80 IRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG 101 (704)
-.|+|+|.+|+||||+.+.|.+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999965
No 446
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=88.27 E-value=0.35 Score=49.25 Aligned_cols=27 Identities=15% Similarity=0.255 Sum_probs=22.3
Q ss_pred CCCCCeEEEEEeCCCCcHHHHHHHHhC
Q 005287 75 DLDFSIRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 75 ~~~~~lrIlVVGkTGvGKSTLINsLlG 101 (704)
.......|++.|+||+|||++...|..
T Consensus 63 ~~~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 63 HETPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp SSCCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 344567899999999999999987754
No 447
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=88.25 E-value=0.27 Score=47.07 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHhC
Q 005287 80 IRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG 101 (704)
..|+|.|++|+|||+|+.+|..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999875
No 448
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=88.22 E-value=0.29 Score=49.07 Aligned_cols=25 Identities=32% Similarity=0.276 Sum_probs=21.4
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhC
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG 101 (704)
...+.|+|.|.+|+||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999998864
No 449
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=88.18 E-value=0.24 Score=57.00 Aligned_cols=25 Identities=24% Similarity=0.565 Sum_probs=22.1
Q ss_pred EEEEeCCCCcHHHHHHHHhCCCCcc
Q 005287 82 ILVLGKTGVGKSATINSIFDQTKTE 106 (704)
Q Consensus 82 IlVVGkTGvGKSTLINsLlG~~~a~ 106 (704)
++|+|++|+|||||++.|+|.....
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~p~ 405 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALKPD 405 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSCCS
T ss_pred EEEECCCCCcHHHHHHHHhcCCCCC
Confidence 7999999999999999999976443
No 450
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=87.97 E-value=0.22 Score=50.74 Aligned_cols=22 Identities=18% Similarity=0.113 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHhC
Q 005287 80 IRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG 101 (704)
-.++|+|++|+|||||+..|++
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
No 451
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=87.94 E-value=0.31 Score=50.14 Aligned_cols=23 Identities=22% Similarity=0.187 Sum_probs=21.1
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHh
Q 005287 78 FSIRILVLGKTGVGKSATINSIF 100 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLl 100 (704)
....|+|.|.+||||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999999997
No 452
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=87.93 E-value=0.29 Score=49.97 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHhC
Q 005287 80 IRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG 101 (704)
..|+|+|.+|+||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
No 453
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=87.82 E-value=0.33 Score=48.12 Aligned_cols=28 Identities=29% Similarity=0.281 Sum_probs=22.2
Q ss_pred CCCCCCeEEEEEeCCCCcHHHHHHHHhC
Q 005287 74 PDLDFSIRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 74 ~~~~~~lrIlVVGkTGvGKSTLINsLlG 101 (704)
++......|+|+|.+|+||||+.+.|.+
T Consensus 11 ~~~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 11 DDKMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp ---CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3445567899999999999999999875
No 454
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=87.73 E-value=0.24 Score=61.76 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=22.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
.++|||++|+|||||++.|+|.-.
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTSSC
T ss_pred EEEEEecCCCcHHHHHHHhccccc
Confidence 799999999999999999999753
No 455
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=87.71 E-value=0.37 Score=48.04 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=21.9
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCC
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
....|+|.|.+|+||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999653
No 456
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=87.71 E-value=0.64 Score=50.81 Aligned_cols=83 Identities=13% Similarity=0.114 Sum_probs=50.8
Q ss_pred eEEEEEeeEcCeEEEEEECCCCCCcccchhhhhHHHHHHHHHHHhcCCCCEEEEEEeccCccCC-------CCcHHHHHH
Q 005287 116 CIREVKGSVNGIKVTFIDTPGFLPSCVRNVKRNRKIMLSVKKFIRRSPPDIVLYFERLDLISMG-------FSDFPLLKL 188 (704)
Q Consensus 116 ~~~~~~~~~~G~~v~LIDTPGl~d~~~~~~~~n~~il~~Ik~~ik~~~~dvVL~Vi~ld~~t~~-------~~D~~lLk~ 188 (704)
.+....+.+++..+.|+||+|-.... ..+ ..+. ..+++++||.+++.+... ..-.....+
T Consensus 206 Gi~~~~~~~~~v~l~iwDtaGQe~~r--------~~w---~~yf--~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~ 272 (402)
T 1azs_C 206 GIFETKFQVDKVNFHMFDVGGQRDER--------RKW---IQCF--NDVTAIIFVVASSSYNMVIREDNQTNRLQEALNL 272 (402)
T ss_dssp SEEEEEEEETTEEEEEEEECCSGGGG--------GGG---GGGT--TTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHH
T ss_pred eeEEEEeecCCccceecccchhhhhh--------hhh---Hhhc--cCCCEEEEEEECcccccccccccccchHHHHHHH
Confidence 34445566788999999999985331 111 1233 268999999988763210 011234445
Q ss_pred HHHHhccc--ccccEEEEEEccCCC
Q 005287 189 MTEVFGTA--IWFNTILVMTHSSST 211 (704)
Q Consensus 189 L~~~fG~~--~~k~vIVVLTK~D~l 211 (704)
+....... ...|+|+|+||.|+.
T Consensus 273 ~~~i~~~~~~~~~piiLvgNK~DL~ 297 (402)
T 1azs_C 273 FKSIWNNRWLRTISVILFLNKQDLL 297 (402)
T ss_dssp HHHHHTCTTCSSCCEEEEEECHHHH
T ss_pred HHHHHhcccCCCCeEEEEEEChhhh
Confidence 55544321 247899999999975
No 457
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=87.69 E-value=0.28 Score=53.10 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=20.9
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhC
Q 005287 79 SIRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG 101 (704)
.-.|+|+|++|+|||||++.|.+
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34789999999999999999996
No 458
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=87.13 E-value=0.31 Score=46.33 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=19.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHhC
Q 005287 80 IRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG 101 (704)
-.++|.|++|+||||++..+..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999864
No 459
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=86.90 E-value=0.33 Score=45.73 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=19.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhC
Q 005287 81 RILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG 101 (704)
.++|.|++|+|||+++..+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999999875
No 460
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=86.90 E-value=0.14 Score=54.96 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=18.5
Q ss_pred EEEEEeCCCCcHHHHHHHHh
Q 005287 81 RILVLGKTGVGKSATINSIF 100 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLl 100 (704)
.++|+|++|+|||||+++|.
T Consensus 62 ~~~lvG~NGaGKStLl~aI~ 81 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALG 81 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 78999999999999998884
No 461
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=86.86 E-value=0.2 Score=60.70 Aligned_cols=24 Identities=42% Similarity=0.612 Sum_probs=22.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
.++|+|++|+|||||++.|+|...
T Consensus 701 ivaIiGpNGSGKSTLLklLaGll~ 724 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGELL 724 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999999753
No 462
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=86.64 E-value=0.26 Score=61.31 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=21.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
.++|+|++|+|||||++.|+|...
T Consensus 418 ~~~ivG~sGsGKSTl~~ll~g~~~ 441 (1284)
T 3g5u_A 418 TVALVGNSGCGKSTTVQLMQRLYD 441 (1284)
T ss_dssp EEEEECCSSSSHHHHHHHTTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 789999999999999999998653
No 463
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=86.50 E-value=0.49 Score=50.47 Aligned_cols=21 Identities=24% Similarity=0.483 Sum_probs=18.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhC
Q 005287 81 RILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG 101 (704)
.++|.|+||+|||+|...+..
T Consensus 125 viLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999998875
No 464
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=86.20 E-value=0.41 Score=45.60 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=19.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhC
Q 005287 81 RILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG 101 (704)
.|.|.|.+|+||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 465
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=86.11 E-value=0.32 Score=52.08 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=21.3
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
.-+++|+|+||+||||+++.|+..
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHHHHHH
Confidence 457899999999999999999864
No 466
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=86.04 E-value=0.35 Score=48.23 Aligned_cols=25 Identities=32% Similarity=0.598 Sum_probs=21.8
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~ 103 (704)
...|+|+|+||+|||||...|..+-
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3569999999999999999998654
No 467
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=85.93 E-value=0.43 Score=46.57 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.7
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhC
Q 005287 79 SIRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG 101 (704)
...|.|.|.+|+||||+.+.|..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999864
No 468
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=85.91 E-value=0.4 Score=46.78 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=17.5
Q ss_pred EEEEEeCCCCcHHHHHHHHh
Q 005287 81 RILVLGKTGVGKSATINSIF 100 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLl 100 (704)
.++|+|++|+|||||...++
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999977664
No 469
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.77 E-value=0.27 Score=51.10 Aligned_cols=20 Identities=25% Similarity=0.622 Sum_probs=19.0
Q ss_pred EEEEeCCCCcHHHHHHHHhC
Q 005287 82 ILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 82 IlVVGkTGvGKSTLINsLlG 101 (704)
+++.|++|+||||+++.|.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999877
No 470
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=85.72 E-value=0.39 Score=49.79 Aligned_cols=24 Identities=29% Similarity=0.591 Sum_probs=21.0
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
.-.|+|.|++|+|||||++.+++.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999999864
No 471
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=85.71 E-value=0.25 Score=57.08 Aligned_cols=20 Identities=35% Similarity=0.605 Sum_probs=18.1
Q ss_pred EEEEEeCCCCcHHHHHHHHh
Q 005287 81 RILVLGKTGVGKSATINSIF 100 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLl 100 (704)
.++|+|++|+|||||+|.|+
T Consensus 350 ~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 350 FVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEEECSTTSSHHHHHTTTH
T ss_pred EEEEEeeCCCCHHHHHHHHH
Confidence 58999999999999999765
No 472
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=85.60 E-value=0.42 Score=43.74 Aligned_cols=24 Identities=17% Similarity=0.376 Sum_probs=20.8
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
...|++.|++|+|||++..+|...
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHh
Confidence 356999999999999999999653
No 473
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=85.57 E-value=0.53 Score=50.36 Aligned_cols=56 Identities=20% Similarity=0.243 Sum_probs=37.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCCCccc---c------CCCCccceEEEEEeeEcCeEEEEEECCCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQTKTET---D------AFQPATDCIREVKGSVNGIKVTFIDTPGF 137 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~~a~v---s------~~~~tT~~~~~~~~~~~G~~v~LIDTPGl 137 (704)
..|+|+|+||||||||...|+.+-...+ + ...-+|..+. ..+..|.+..+||...+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~--~eE~~gvphhlidi~~~ 105 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKIS--VPDRGGVPHHLLGEVDP 105 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCC--SGGGTTCCEESSSCBCG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCC--HHHHcCCCEeeccccCc
Confidence 4699999999999999999987543211 1 1222344332 12346778888887777
No 474
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=85.52 E-value=0.29 Score=55.63 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=22.1
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCC
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
....|+|+|.+|+|||||++.|.+.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHh
Confidence 3468999999999999999999875
No 475
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=85.40 E-value=0.61 Score=46.60 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=20.1
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhC
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG 101 (704)
...-.|+|+|+|||||+|....|..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3444577899999999999988864
No 476
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=85.39 E-value=0.12 Score=52.18 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=19.3
Q ss_pred EEEEeCCCCcHHHHHHHHhCCC
Q 005287 82 ILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 82 IlVVGkTGvGKSTLINsLlG~~ 103 (704)
++|+|++|+|||||+++|.|-.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 3689999999999999998743
No 477
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=85.36 E-value=0.43 Score=46.64 Aligned_cols=19 Identities=37% Similarity=0.716 Sum_probs=17.0
Q ss_pred EEEEEeCCCCcHHHHHHHH
Q 005287 81 RILVLGKTGVGKSATINSI 99 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsL 99 (704)
-.+|+|++|+||||++.+|
T Consensus 25 ~~~I~G~NgsGKStil~ai 43 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAI 43 (203)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHH
Confidence 4578899999999999988
No 478
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=85.35 E-value=1.3 Score=46.96 Aligned_cols=25 Identities=32% Similarity=0.385 Sum_probs=21.6
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhCC
Q 005287 78 FSIRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
..-.|+|.|++|+|||+++.+|...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999753
No 479
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=84.85 E-value=0.42 Score=53.85 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHhC
Q 005287 80 IRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG 101 (704)
-.++|+|.||+|||+++|+|+.
T Consensus 168 pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 168 PHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp CSEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 480
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=84.82 E-value=0.37 Score=58.31 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=20.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~ 102 (704)
.++|+|++|+|||||++.|.|.
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG 484 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANG 484 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999953
No 481
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=84.59 E-value=1.3 Score=49.31 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.1
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHhC
Q 005287 78 FSIRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 78 ~~lrIlVVGkTGvGKSTLINsLlG 101 (704)
.+..|+|.|+||+|||++..+|..
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEECcCCCCHHHHHHHHHH
Confidence 345799999999999999999965
No 482
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=84.42 E-value=0.51 Score=50.15 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
..|+|+|+||+||||+...|...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999754
No 483
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=84.39 E-value=0.45 Score=59.22 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=21.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhCCCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQTK 104 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~~~ 104 (704)
+++|+|++|+|||||++.|+|-..
T Consensus 1061 ~v~ivG~sGsGKSTl~~~l~g~~~ 1084 (1284)
T 3g5u_A 1061 TLALVGSSGCGKSTVVQLLERFYD 1084 (1284)
T ss_dssp EEEEECSSSTTHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCcC
Confidence 789999999999999999998653
No 484
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=84.32 E-value=0.41 Score=48.04 Aligned_cols=22 Identities=23% Similarity=0.164 Sum_probs=19.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHhC
Q 005287 80 IRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG 101 (704)
-.|++.|+||+||||++.+|+.
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999888864
No 485
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=84.24 E-value=0.44 Score=50.44 Aligned_cols=25 Identities=28% Similarity=0.605 Sum_probs=22.2
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~~ 103 (704)
..-|+++|++|+||||+.+.|+.+.
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~g 168 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKRG 168 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhcC
Confidence 3579999999999999999998754
No 486
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=84.11 E-value=0.65 Score=45.98 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.1
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
+..|+|.|..|+||||+++.|...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999999754
No 487
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=84.06 E-value=0.71 Score=46.93 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
-.++++|++|+|||++...|.+.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 47999999999999999998763
No 488
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=83.77 E-value=0.53 Score=50.40 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
..|+|+|+|||||||+...|...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 46899999999999999998654
No 489
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=83.74 E-value=0.46 Score=50.61 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQT 103 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~~ 103 (704)
-.+.|+|++|+|||||++.|++..
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999999998753
No 490
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=83.68 E-value=0.61 Score=51.40 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=21.7
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHhC
Q 005287 77 DFSIRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsLlG 101 (704)
..++.|+++|.+|+||||+.+.|..
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~ 61 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTR 61 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999999999964
No 491
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=83.57 E-value=0.72 Score=47.54 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=21.4
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhCC
Q 005287 79 SIRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
+-.|++.|+||+|||+++++|.+.
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHH
Confidence 457999999999999999999864
No 492
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=83.35 E-value=0.68 Score=49.75 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=21.2
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHH
Q 005287 77 DFSIRILVLGKTGVGKSATINSI 99 (704)
Q Consensus 77 ~~~lrIlVVGkTGvGKSTLINsL 99 (704)
....+|+|+|.+|+||||++..|
T Consensus 31 ~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHH
Confidence 45799999999999999999888
No 493
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=83.34 E-value=0.56 Score=48.48 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
-.++|.|++|+|||||+..|.+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999999999753
No 494
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=83.25 E-value=0.47 Score=53.08 Aligned_cols=20 Identities=30% Similarity=0.358 Sum_probs=18.0
Q ss_pred eEEEEEeCCCCcHHHHHHHH
Q 005287 80 IRILVLGKTGVGKSATINSI 99 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsL 99 (704)
=.++|+|++|+|||||++.+
T Consensus 40 e~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 40 RSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp SEEEEEESTTSSHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHH
Confidence 36899999999999999994
No 495
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=83.24 E-value=0.58 Score=47.26 Aligned_cols=23 Identities=35% Similarity=0.587 Sum_probs=20.2
Q ss_pred CeEEEEEeCCCCcHHHHHHHHhC
Q 005287 79 SIRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 79 ~lrIlVVGkTGvGKSTLINsLlG 101 (704)
+..|++.|+||+|||++...|..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999864
No 496
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=83.21 E-value=0.41 Score=43.80 Aligned_cols=23 Identities=9% Similarity=0.183 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
..|++.|++|+|||++..+|...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 46999999999999999988764
No 497
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=83.14 E-value=0.79 Score=54.44 Aligned_cols=23 Identities=26% Similarity=0.575 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHhCC
Q 005287 80 IRILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG~ 102 (704)
-+++++|+||+||||++..|...
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999999864
No 498
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=83.01 E-value=2.9 Score=42.84 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=17.6
Q ss_pred EEEEEeCCCCcHHHHHHHHhCC
Q 005287 81 RILVLGKTGVGKSATINSIFDQ 102 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG~ 102 (704)
-+++.|++|+|||+++.+|...
T Consensus 50 ~~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHHH
T ss_pred EEEeeCcCCCCHHHHHHHHHHH
Confidence 3566677999999999999643
No 499
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=82.87 E-value=1.2 Score=53.61 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=18.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhC
Q 005287 81 RILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 81 rIlVVGkTGvGKSTLINsLlG 101 (704)
-++|+|++|+|||||++.|.+
T Consensus 675 i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 675 VMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp EEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEECCCCCchHHHHHHHHH
Confidence 578999999999999999854
No 500
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=82.83 E-value=0.5 Score=51.36 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=19.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHhC
Q 005287 80 IRILVLGKTGVGKSATINSIFD 101 (704)
Q Consensus 80 lrIlVVGkTGvGKSTLINsLlG 101 (704)
-.++|+|++|+||||++++|.+
T Consensus 27 ~~~~i~G~nG~GKstll~ai~~ 48 (430)
T 1w1w_A 27 NFTSIIGPNGSGKSNMMDAISF 48 (430)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3567999999999999999975
Done!